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Title: Insights into the binding of PARP inhibitors to the catalytic domain of human tankyrase-2

Abstract

The poly(ADP-ribose) polymerase (PARP) family represents a new class of therapeutic targets with diverse potential disease indications. PARP1 and PARP2 inhibitors have been developed for breast and ovarian tumors manifesting double-stranded DNA-repair defects, whereas tankyrase 1 and 2 (TNKS1 and TNKS2, also known as PARP5a and PARP5b, respectively) inhibitors have been developed for tumors with elevated β-catenin activity. As the clinical relevance of PARP inhibitors continues to be actively explored, there is heightened interest in the design of selective inhibitors based on the detailed structural features of how small-molecule inhibitors bind to each of the PARP family members. Here, the high-resolution crystal structures of the human TNKS2 PARP domain in complex with 16 various PARP inhibitors are reported, including the compounds BSI-201, AZD-2281 and ABT-888, which are currently in Phase 2 or 3 clinical trials. These structures provide insight into the inhibitor-binding modes for the tankyrase PARP domain and valuable information to guide the rational design of future tankyrase-specific inhibitors.

Authors:
 [1];  [1];  [1];  [1];  [1];  [1];  [1];  [1];  [1];  [1];  [2];  [3];  [1]
+ Show Author Affiliations
  1. Univ. Health Network, Toronto, ON (Canada)
  2. Univ. Health Network, Ontario (Canada); Univ. of Toronto, Toronto, ON (Canada)
  3. Univ. Health Network, Toronto, ON (Canada); Univ. of Toronto, Toronto, ON (Canada)
Publication Date:
Research Org.:
Argonne National Lab. (ANL), Argonne, IL (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1162303
Grant/Contract Number:  
AC02-06CH11357
Resource Type:
Accepted Manuscript
Journal Name:
Acta Crystallographica. Section D: Biological Crystallography (Online)
Additional Journal Information:
Journal Name: Acta Crystallographica. Section D: Biological Crystallography (Online); Journal Volume: 70; Journal Issue: 10; Journal ID: ISSN 1399-0047
Publisher:
International Union of Crystallography
Country of Publication:
United States
Language:
ENGLISH
Subject:
59 BASIC BIOLOGICAL SCIENCES; cancer; poly(ADP-ribose) polymerase; TNKS2; structure-based drug discovery; structural biology

Citation Formats

Qiu, Wei, Lam, Robert, Voytyuk, Oleksandr, Romanov, Vladimir, Gordon, Roni, Gebremeskel, Simon, Vodsedalek, Jakub, Thompson, Christine, Beletskaya, Irina, Battaile, Kevin P., Pai, Emil F., Rottapel, Robert, and Chirgadze, Nickolay Y. Insights into the binding of PARP inhibitors to the catalytic domain of human tankyrase-2. United States: N. p., 2014. Web. doi:10.1107/S1399004714017660.
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Qiu, Wei, Lam, Robert, Voytyuk, Oleksandr, Romanov, Vladimir, Gordon, Roni, Gebremeskel, Simon, Vodsedalek, Jakub, Thompson, Christine, Beletskaya, Irina, Battaile, Kevin P., Pai, Emil F., Rottapel, Robert, & Chirgadze, Nickolay Y. Insights into the binding of PARP inhibitors to the catalytic domain of human tankyrase-2. United States. https://doi.org/10.1107/S1399004714017660
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Qiu, Wei, Lam, Robert, Voytyuk, Oleksandr, Romanov, Vladimir, Gordon, Roni, Gebremeskel, Simon, Vodsedalek, Jakub, Thompson, Christine, Beletskaya, Irina, Battaile, Kevin P., Pai, Emil F., Rottapel, Robert, and Chirgadze, Nickolay Y. Thu . "Insights into the binding of PARP inhibitors to the catalytic domain of human tankyrase-2". United States. https://doi.org/10.1107/S1399004714017660. https://www.osti.gov/servlets/purl/1162303.
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@article{osti_1162303,
title = {Insights into the binding of PARP inhibitors to the catalytic domain of human tankyrase-2},
author = {Qiu, Wei and Lam, Robert and Voytyuk, Oleksandr and Romanov, Vladimir and Gordon, Roni and Gebremeskel, Simon and Vodsedalek, Jakub and Thompson, Christine and Beletskaya, Irina and Battaile, Kevin P. and Pai, Emil F. and Rottapel, Robert and Chirgadze, Nickolay Y.},
abstractNote = {The poly(ADP-ribose) polymerase (PARP) family represents a new class of therapeutic targets with diverse potential disease indications. PARP1 and PARP2 inhibitors have been developed for breast and ovarian tumors manifesting double-stranded DNA-repair defects, whereas tankyrase 1 and 2 (TNKS1 and TNKS2, also known as PARP5a and PARP5b, respectively) inhibitors have been developed for tumors with elevated β-catenin activity. As the clinical relevance of PARP inhibitors continues to be actively explored, there is heightened interest in the design of selective inhibitors based on the detailed structural features of how small-molecule inhibitors bind to each of the PARP family members. Here, the high-resolution crystal structures of the human TNKS2 PARP domain in complex with 16 various PARP inhibitors are reported, including the compounds BSI-201, AZD-2281 and ABT-888, which are currently in Phase 2 or 3 clinical trials. These structures provide insight into the inhibitor-binding modes for the tankyrase PARP domain and valuable information to guide the rational design of future tankyrase-specific inhibitors.},
doi = {10.1107/S1399004714017660},
journal = {Acta Crystallographica. Section D: Biological Crystallography (Online)},
number = 10,
volume = 70,
place = {United States},
year = {Thu Jul 31 00:00:00 EDT 2014},
month = {Thu Jul 31 00:00:00 EDT 2014}
}
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Publisher's Version of Record
https://doi.org/10.1107/S1399004714017660
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Works referencing / citing this record:

In silico insights on tankyrase protein: A potential target for colorectal cancer
journal, December 2018

  • Loganathan, Lakshmanan; Muthusamy, Karthikeyan; Jayaraj, John Marshal
  • Journal of Biomolecular Structure and Dynamics, Vol. 37, Issue 14
  • DOI: 10.1080/07391102.2018.1521748

Regulation of Wnt/β-catenin signalling by tankyrase-dependent poly(ADP-ribosyl)ation and scaffolding: Control of Wnt/β-catenin signalling by tankyrase
journal, November 2017

  • Mariotti, Laura; Pollock, Katie; Guettler, Sebastian
  • British Journal of Pharmacology, Vol. 174, Issue 24
  • DOI: 10.1111/bph.14038

Structural basis for allosteric PARP-1 retention on DNA breaks
journal, April 2020

  • Zandarashvili, Levani; Langelier, Marie-France; Velagapudi, Uday Kiran
  • Science, Vol. 368, Issue 6486
  • DOI: 10.1126/science.aax6367

PARP inhibition in leukocytes diminishes inflammation via effects on integrins/cytoskeleton and protects the blood-brain barrier
journal, September 2016

  • Rom, Slava; Zuluaga-Ramirez, Viviana; Reichenbach, Nancy L.
  • Journal of Neuroinflammation, Vol. 13, Issue 1
  • DOI: 10.1186/s12974-016-0729-x
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