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Title: Flavin-Induced Oligomerization in Escherichia coli Adaptive Response Protein AidB

Authors:
 [1]; ; ;  [1];
  1. Department of Chemistry, Boston University, 590 Commonwealth Avenue, Boston, Massachusetts 02215, United States
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1123326
Resource Type:
Published Article
Journal Name:
Biochemistry
Additional Journal Information:
Journal Name: Biochemistry Journal Volume: 50 Journal Issue: 46; Journal ID: ISSN 0006-2960
Publisher:
American Chemical Society
Country of Publication:
United States
Language:
English

Citation Formats

Hamill, Michael J., Jost, Marco, Wong, Cintyu, Elliott, Sean J., and Drennan, Catherine L. Flavin-Induced Oligomerization in Escherichia coli Adaptive Response Protein AidB. United States: N. p., 2011. Web. doi:10.1021/bi201340t.
Hamill, Michael J., Jost, Marco, Wong, Cintyu, Elliott, Sean J., & Drennan, Catherine L. Flavin-Induced Oligomerization in Escherichia coli Adaptive Response Protein AidB. United States. https://doi.org/10.1021/bi201340t
Hamill, Michael J., Jost, Marco, Wong, Cintyu, Elliott, Sean J., and Drennan, Catherine L. Thu . "Flavin-Induced Oligomerization in Escherichia coli Adaptive Response Protein AidB". United States. https://doi.org/10.1021/bi201340t.
@article{osti_1123326,
title = {Flavin-Induced Oligomerization in Escherichia coli Adaptive Response Protein AidB},
author = {Hamill, Michael J. and Jost, Marco and Wong, Cintyu and Elliott, Sean J. and Drennan, Catherine L.},
abstractNote = {},
doi = {10.1021/bi201340t},
journal = {Biochemistry},
number = 46,
volume = 50,
place = {United States},
year = {Thu Oct 27 00:00:00 EDT 2011},
month = {Thu Oct 27 00:00:00 EDT 2011}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1021/bi201340t

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Cited by: 7 works
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Works referenced in this record:

Deflavination and reconstitution of flavoproteins: Tackling fold and function
journal, October 2003


New tools for structure refinement in PHENIX
journal, August 2010

  • Adams, Paul; Afonine, Pavel; Echols, Nat
  • Acta Crystallographica Section A Foundations of Crystallography, Vol. 66, Issue a1
  • DOI: 10.1107/S010876731009968X

Modern analytical ultracentrifugation in protein science: A tutorial review
journal, September 2002

  • Lebowitz, Jacob; Lewis, Marc S.; Schuck, Peter
  • Protein Science, Vol. 11, Issue 9
  • DOI: 10.1110/ps.0207702

Adaptive response of escherichia coli to alkylation damage
journal, January 1988

  • Volkert, Michael R.
  • Environmental and Molecular Mutagenesis, Vol. 11, Issue 2
  • DOI: 10.1002/em.2850110210

Redox and flavin-binding properties of recombinant flavodoxin from Desulfovibrio vulgaris (Hildenborough)
journal, December 1991


Structural insight into antibiotic fosfomycin biosynthesis by a mononuclear iron enzyme
journal, July 2005

  • Higgins, Luke J.; Yan, Feng; Liu, Pinghua
  • Nature, Vol. 437, Issue 7060
  • DOI: 10.1038/nature03924

Three-dimensional structure of the free radical protein of ribonucleotide reductase
journal, June 1990

  • Nordlund, Pär; Sjöberg, Britt-Marie; Eklund, Hans
  • Nature, Vol. 345, Issue 6276
  • DOI: 10.1038/345593a0

Oxidized triphosphopyridine nucleotide specific isocitrate dehydrogenase from Azotobacter vinelandii. Modification of a reactive sulfhydryl group with cyanide
journal, July 1971

  • Chung, Albert E.; Franzen, James S.; Braginski, Janina E.
  • Biochemistry, Vol. 10, Issue 15
  • DOI: 10.1021/bi00791a012

Recent progress on the Ada response for inducible repair of DNA alkylation damage
journal, December 2002


Specific DNA Binding and Regulation of Its Own Expression by the AidB Protein in Escherichia coli
journal, December 2010

  • Rippa, Valentina; Amoresano, Angela; Esposito, Carla
  • Journal of Bacteriology, Vol. 192, Issue 23
  • DOI: 10.1128/JB.00858-10

How to study proteins by circular dichroism
journal, August 2005

  • Kelly, Sharon M.; Jess, Thomas J.; Price, Nicholas C.
  • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1751, Issue 2
  • DOI: 10.1016/j.bbapap.2005.06.005

The system E 8 , a special class of simple polyhedra and gas hydrate structures
journal, August 2010

  • Talis, Alexander; Samoylovich, Mikhail; Ronova, Inga
  • Acta Crystallographica Section A Foundations of Crystallography, Vol. 66, Issue a1
  • DOI: 10.1107/S0108767310099757

Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage
journal, September 2002

  • Trewick, Sarah C.; Henshaw, Timothy F.; Hausinger, Robert P.
  • Nature, Vol. 419, Issue 6903
  • DOI: 10.1038/nature00908

Structure and DNA binding of alkylation response protein AidB
journal, September 2008

  • Bowles, Timothy; Metz, Audrey H.; O'Quin, Jami
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 40
  • DOI: 10.1073/pnas.0806521105

Alleviation of 1, N 6 -ethanoadenine genotoxicity by the Escherichia coli adaptive response protein AlkB
journal, January 2007

  • Frick, Lauren E.; Delaney, James C.; Wong, Cintyu
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 3
  • DOI: 10.1073/pnas.0607377104

Structure and transcriptional regulation of the Escherichia coli adaptive response gene aidB.
journal, November 1994


AlkB reverses etheno DNA lesions caused by lipid oxidation in vitro and in vivo
journal, October 2005

  • Delaney, James C.; Smeester, Lisa; Wong, Cintyu
  • Nature Structural & Molecular Biology, Vol. 12, Issue 10
  • DOI: 10.1038/nsmb996

Adaptation to alkylation resistance involves the induction of a DNA glycosylase
journal, April 1982

  • Evensen, Grethe; Seeberg, Erling
  • Nature, Vol. 296, Issue 5859
  • DOI: 10.1038/296773a0

Induction of a DNA glycosylase for N-methylated purines is part of the adaptive response to alkylating agents
journal, April 1982

  • Karran, Peter; Hjelmgren, Thomas; Lindahl, Tomas
  • Nature, Vol. 296, Issue 5859
  • DOI: 10.1038/296770a0

Induction of specific Escherichia coli genes by sublethal treatments with alkylating agents.
journal, July 1984

  • Volkert, M. R.; Nguyen, D. C.
  • Proceedings of the National Academy of Sciences, Vol. 81, Issue 13
  • DOI: 10.1073/pnas.81.13.4110

Version 1.2 of the Crystallography and NMR system
journal, October 2007


Calculation of Hydrodynamic Properties of Globular Proteins from Their Atomic-Level Structure
journal, February 2000


ESCHERICHIA COLI GENE INDUCTION BY ALKYLATION TREATMENT
journal, January 1986


Functional domains and methyl acceptor sites of the Escherichia coli ada protein.
journal, March 1988


Repair of 3-methylthymine and 1-methylguanine lesions by bacterial and human AlkB proteins
journal, November 2004


Active site and complete sequence of the suicidal methyltransferase that counters alkylation mutagenesis.
journal, May 1985

  • Demple, B.; Sedgwick, B.; Robins, P.
  • Proceedings of the National Academy of Sciences, Vol. 82, Issue 9
  • DOI: 10.1073/pnas.82.9.2688

Superconducting Single Crystals of Tl2Ba2CaCu2O8 and YBa2Cu4O8: Crystal Structures in the Vicinity of Tc
journal, November 1998

  • Molchanov, V. N.; Simonov, V. I.
  • Acta Crystallographica Section A Foundations of Crystallography, Vol. 54, Issue 6
  • DOI: 10.1107/S0108767398011465

Flavoenzymes that catalyse reactions with no net redox change
journal, September 2002

  • Bornemann, Stephen
  • Natural Product Reports, Vol. 19, Issue 6
  • DOI: 10.1039/b108916c

A new pathway for DNA repair in Escherichia coli
journal, May 1977

  • Samson, Leona; Cairns, John
  • Nature, Vol. 267, Issue 5608
  • DOI: 10.1038/267281a0

Regulatory Responses of the Adaptive Response to Alkylation Damage: a Simple Regulon with Complex Regulatory Features
journal, December 2000


The AidB Component of the Escherichia coli Adaptive Response to Alkylating Agents Is a Flavin-Containing, DNA-Binding Protein
journal, December 2005


Inference of Macromolecular Assemblies from Crystalline State
journal, September 2007


Structure of Human Isovaleryl-CoA Dehydrogenase at 2.6 Å Resolution:  Structural Basis for Substrate Specificity ,
journal, July 1997

  • Tiffany, Karen A.; Roberts, David L.; Wang, Ming
  • Biochemistry, Vol. 36, Issue 28
  • DOI: 10.1021/bi970422u

Escherichia coli glyoxalate carboligase. Properties and reconstitution with 5-deazaFAD and 1,5-dihydrodeazaFADH2.
journal, January 1976


Preferential DNA damage prevention by the E. coli AidB gene: A new mechanism for the protection of specific genes
journal, September 2011


AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli
journal, September 2002

  • Falnes, Pål Ø.; Johansen, Rune F.; Seeberg, Erling
  • Nature, Vol. 419, Issue 6903
  • DOI: 10.1038/nature01048

Phaser crystallographic software
journal, July 2007

  • McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
  • Journal of Applied Crystallography, Vol. 40, Issue 4
  • DOI: 10.1107/S0021889807021206

Repairing DNA-methylation damage
journal, February 2004

  • Sedgwick, Barbara
  • Nature Reviews Molecular Cell Biology, Vol. 5, Issue 2
  • DOI: 10.1038/nrm1312

The Escherichia coli alkylation response protein AidB is a redox partner of flavodoxin and binds RNA and acyl carrier protein
journal, September 2011

  • Mulrooney, Scott B.; Howard, Michael J.; Hausinger, Robert P.
  • Archives of Biochemistry and Biophysics, Vol. 513, Issue 2
  • DOI: 10.1016/j.abb.2011.07.004

Crystal structures of medium-chain acyl-CoA dehydrogenase from pig liver mitochondria with and without substrate.
journal, August 1993

  • Kim, J. J.; Wang, M.; Paschke, R.
  • Proceedings of the National Academy of Sciences, Vol. 90, Issue 16
  • DOI: 10.1073/pnas.90.16.7523