National Library of Energy BETA

Sample records for vcrs visual contrast

  1. Visualization

    Office of Scientific and Technical Information (OSTI)

    Visualization of Force Fields in Protein Structure Prediction Clark Crawford ∗ Oliver Kreylos † Bernd Hamann ‡ Silvia Crivelli § ABSTRACT The force fields used in molecular computational biology are not mathematically defined in such a way that their representation would facilitate a straightforward application of volume visualiza- tion techniques. To visualize energy, it is necessary to define a spa- tial mapping for these fields. Equipped with such a mapping, we can generate volume

  2. Data Visualization

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualization Data Visualization Scientific Visualization is the process of creating visual imagery from raw scientific data. NERSC supports the VisIt and Paraview tools for visualizing and interacting with generic scientific datasets. NCAR Graphics Library is provided (as a specialized package) for climate data. The field of information visualization deals with rendering datasets that do not necessarily map onto a natural 2D or 3D co-ordinate system. R (ggplot2) and python (matplotlib) provide

  3. HPC Visualization

    SciTech Connect (OSTI)

    Monroe, Laura Marie

    2015-04-28

    A brief overview of the Los Alamos National Laboratory’s visualization capabilities and how projects benefits from these.

  4. Volume Visualization

    Office of Scientific and Technical Information (OSTI)

    Volume Visualization of Multiple Alignment of Large Genomic DNA Nameeta Shah 1,2 , Scott E. Dillard 1 , Gunther H. Weber 1,2 , and Bernd Hamann 1,2 1 Institute for Data Analysis and Visualization (IDAV), Department of Computer Science, One Shields Avenue, University of California, Davis, CA 95616-8562, U.S.A. {nyshah, sedillard, ghweber, bhamann}@ucdavis.edu 2 Visualization Group, National Energy Research Scientific Computing Center (NERSC), Lawrence Berkeley National Laboratory, One Cyclotron

  5. Nessus Visualization

    Energy Science and Technology Software Center (OSTI)

    2012-10-01

    NV is a visualization tool for exploring vulnerabilities within a network. The data is created with a vulnerability assessment tool, such as Nessus (http://www.tenable.com/products/nessus).

  6. Visual Breakout

    Broader source: Energy.gov [DOE]

    Visual Breakout of the Cummulative Barrels of Oil Recovered by the Discoverer Enterprise, Q4000 and HP1. Updated through 12:00 AM on July 16, 2010.

  7. VISUAL-SOLAR

    Energy Science and Technology Software Center (OSTI)

    003661IBMPC00 Visual-SOLAR: Modeling and Visualization of Solar Radiation Potential on Individual Building Rooftops

  8. Nuclear magnetic resonance contrast agents

    DOE Patents [OSTI]

    Smith, P.H.; Brainard, J.R.; Jarvinen, G.D.; Ryan, R.R.

    1997-12-30

    A family of contrast agents for use in magnetic resonance imaging and a method of enhancing the contrast of magnetic resonance images of an object by incorporating a contrast agent of this invention into the object prior to forming the images or during formation of the images. A contrast agent of this invention is a paramagnetic lanthanide hexaazamacrocyclic molecule, where a basic example has the formula LnC{sub 16}H{sub 14}N{sub 6}. Important applications of the invention are in medical diagnosis, treatment, and research, where images of portions of a human body are formed by means of magnetic resonance techniques. 10 figs.

  9. Nuclear magnetic resonance contrast agents

    DOE Patents [OSTI]

    Smith, Paul H.; Brainard, James R.; Jarvinen, Gordon D.; Ryan, Robert R.

    1997-01-01

    A family of contrast agents for use in magnetic resonance imaging and a method of enhancing the contrast of magnetic resonance images of an object by incorporating a contrast agent of this invention into the object prior to forming the images or during formation of the images. A contrast agent of this invention is a paramagnetic lanthanide hexaazamacrocyclic molecule, where a basic example has the formula LnC.sub.16 H.sub.14 N.sub.6. Important applications of the invention are in medical diagnosis, treatment, and research, where images of portions of a human body are formed by means of magnetic resonance techniques.

  10. Notes for Visualization Requirememnts

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Notes for Visualization Requirememnts Notes from June 5, 2002, Visualization Requirements for DOE-Sponsored Computational Science and Engineering Applications A DOE Workshop to Be ...

  11. Development of neutron tomography and phase contrast imaging technique

    SciTech Connect (OSTI)

    Kashyap, Y. S.; Agrawal, Ashish; Sarkar, P. S.; Shukla, Mayank; Sinha, Amar

    2013-02-05

    This paper presents design and development of a state of art neutron imaging technique at CIRUS reactor with special reference for techniques adopted for tomography and phase contrast imaging applications. Different components of the beamline such as collimator, shielding, sample manipulator, digital imaging system were designed keeping in mind the requirements of data acquisition time and resolution. The collimator was designed in such a way that conventional and phase contrast imaging can be done using same collimator housing. We have done characterization of fuel pins, study of hydride blisters in pressure tubes hydrogen based cells, two phase flow visualization, and online study of locomotive parts etc. using neutron tomography and radiography technique. We have also done some studies using neutron phase contrast imaging technique on this beamline.

  12. ESnet Visualization Widgets

    Energy Science and Technology Software Center (OSTI)

    2012-07-01

    The ESnet Visualization widgets are various data visualization widgets for use in web browsers to aid in the visualization of computer networks. In particular the widgets are targetted at displaying timeseries and topology data. They were developed for use in the MyESnet portal but are general enough to be used other places. The widgets are built using the d3.js library.

  13. Visual Resources | Open Energy Information

    Open Energy Info (EERE)

    Visual Resources Jump to: navigation, search Retrieved from "http:en.openei.orgwindex.php?titleVisualResources&oldid612333...

  14. Contrasting soil microbial community functional structures in...

    Office of Scientific and Technical Information (OSTI)

    Contrasting soil microbial community functional structures in two major landscapes of the Tibetan alpine meadow Prev Next Title: Contrasting soil microbial community...

  15. Visualization of electronic density

    SciTech Connect (OSTI)

    Grosso, Bastien; Cooper, Valentino R.; Pine, Polina; Hashibon, Adham; Yaish, Yuval; Adler, Joan

    2015-04-22

    An atoms volume depends on its electronic density. Although this density can only be evaluated exactly for hydrogen-like atoms, there are many excellent numerical algorithms and packages to calculate it for other materials. 3D visualization of charge density is challenging, especially when several molecular/atomic levels are intertwined in space. We explore several approaches to 3D charge density visualization, including the extension of an anaglyphic stereo visualization application based on the AViz package to larger structures such as nanotubes. We will describe motivations and potential applications of these tools for answering interesting questions about nanotube properties.

  16. Visualization of electronic density

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Grosso, Bastien; Cooper, Valentino R.; Pine, Polina; Hashibon, Adham; Yaish, Yuval; Adler, Joan

    2015-04-22

    An atom’s volume depends on its electronic density. Although this density can only be evaluated exactly for hydrogen-like atoms, there are many excellent numerical algorithms and packages to calculate it for other materials. 3D visualization of charge density is challenging, especially when several molecular/atomic levels are intertwined in space. We explore several approaches to 3D charge density visualization, including the extension of an anaglyphic stereo visualization application based on the AViz package to larger structures such as nanotubes. We will describe motivations and potential applications of these tools for answering interesting questions about nanotube properties.

  17. Visualizations Image Gallery

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualizations Visualizations Image Gallery Chensantacruz Unusual Death for Ancient Stars chombocrunch2shalehi-res.jpg Resolved Steady-State Flow in Fractured Shale inn-nano-wire-pr-green.png Indium Nitride Nanostructures For More Efficient LEDs combustionmodeling1.jpg Turbulent Combustion Simulations lic-b-427-hr-crop-small.png Turbulence in Solar Wind corecollapserotator2 Explosion Mechanism in Core-Collapse Supernovae OpenMSINERSC.jpg OpenMSI: Mass Spectrometry Images of 3 Lipids Across a

  18. TRANSIMS Visualizations at TRACC

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualizations at TRACC TRACC is currently actively developing two separate visualization applications. One of these applications is 'Metropolis', developed by NCSA (the National Center for Supercomputing Applications), targets an interactive model that allows a modeler to navigate in three-dimensional space and time while displaying moving vehicles, dynamic volumes on the links, and many more such dynamic network features. The software is being developed based on OpenGL, and is comparable to

  19. Extreme Scale Visual Analytics

    SciTech Connect (OSTI)

    Steed, Chad A; Potok, Thomas E; Pullum, Laura L; Ramanathan, Arvind; Shipman, Galen M; Thornton, Peter E

    2013-01-01

    Given the scale and complexity of today s data, visual analytics is rapidly becoming a necessity rather than an option for comprehensive exploratory analysis. In this paper, we provide an overview of three applications of visual analytics for addressing the challenges of analyzing climate, text streams, and biosurveilance data. These systems feature varying levels of interaction and high performance computing technology integration to permit exploratory analysis of large and complex data of global significance.

  20. Visualizations for Real-time Pricing Demonstration

    SciTech Connect (OSTI)

    Marinovici, Maria C.; Hammerstrom, Janelle L.; Widergren, Steven E.; Dayley, Greg K.

    2014-10-13

    In this paper, the visualization tools created for monitoring the operations of a real-time pricing demonstration system that runs at a distribution feeder level are presented. The information these tools provide gives insights into demand behavior from automated price responsive devices, distribution feeder characteristics, impact of weather on system’s development, and other significant dynamics. Given the large number of devices that bid into a feeder-level real-time electricity market, new techniques are explored to summarize the present state of the system and contrast that with previous trends as well as future projections. To better understand the system behavior and correctly inform decision-making procedures, effective visualization of the data is imperative.

  1. Multi-step contrast sensitivity gauge

    DOE Patents [OSTI]

    Quintana, Enrico C; Thompson, Kyle R; Moore, David G; Heister, Jack D; Poland, Richard W; Ellegood, John P; Hodges, George K; Prindville, James E

    2014-10-14

    An X-ray contrast sensitivity gauge is described herein. The contrast sensitivity gauge comprises a plurality of steps of varying thicknesses. Each step in the gauge includes a plurality of recesses of differing depths, wherein the depths are a function of the thickness of their respective step. An X-ray image of the gauge is analyzed to determine a contrast-to-noise ratio of a detector employed to generate the image.

  2. Contrasting soil microbial community functional structures in...

    Office of Scientific and Technical Information (OSTI)

    two major landscapes of the Tibetan alpine meadow Prev Next Title: Contrasting soil microbial community functional structures in two major landscapes of the Tibetan alpine...

  3. Robotic Intelligence Kernel: Visualization

    Energy Science and Technology Software Center (OSTI)

    2009-09-16

    The INL Robotic Intelligence Kernel-Visualization is the software that supports the user interface. It uses the RIK-C software to communicate information to and from the robot. The RIK-V illustrates the data in a 3D display and provides an operating picture wherein the user can task the robot.

  4. Visualization | OpenEI Community

    Open Energy Info (EERE)

    Enabling Unique Visualization and Manipulation of Energy Data at Multiple Scales FRED Free Energy Data Map OpenEI Tool Visualization The U.S. Department of Energy, the Pacific...

  5. Visual Engineering | The Ames Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visual Engineering Visual Engineering At the Ames Laboratory we are working with Iowa State Image University to create an interactive visual engineering environment to design new products, better power plants, or any other engineering products. In addition, Mark Bryden and Doug McCorkle, along with collaborators at NETL and Reaction Engineering International have developed open-source software to look at the physics behind power plant operation within this visual environment. Image Their VE-PSI

  6. Collaboration Topics - Visualization | National Nuclear Security...

    National Nuclear Security Administration (NNSA)

    NNSACEA Cooperation in Computer Science Collaboration Topics - Visualization ... to visualize large data sets on small computational resources. 3) In situ visualization ...

  7. Visualization Gallery from the Computational Research Division...

    Office of Scientific and Technical Information (OSTI)

    Visualization and Analysis of 3D Gene Expression Data; 4) Visualization of Quantum ... angular momentum transport; 9) Sunfall: Visual Analytics for Astrophysics; 10) Fast ...

  8. Incompatibility of Contrast Medium and Trisodium Citrate

    SciTech Connect (OSTI)

    Delcour, Christian Bruninx, Guy

    2013-02-15

    To test the compatibility of trisodium citrate, a catheter lock solution, with iodinated contrast medium. Iohexol, iobitridol, iodixanol, ioxaglate, ioxithalamate, iomeprol, and iopromide were tested. In all tests, 2 ml of contrast medium were mixed with 2 ml of trisodium citrate solution. Iodixanol and ioxaglate provoked a highly viscous gluelike precipitation when mixed with trisodium citrate. A brief transient precipitate was observed with iohexol, iomeprol, and ioxithalamate. Permanent precipitation occurred with iobitridol and iopromide. One must be aware of the potential for precipitation when contrast medium is mixed with trisodium citrate solution. Before trisodium citrate solution is injected, the catheter should be thoroughly flushed with saline if a contrast medium has previously been injected through it.

  9. X-ray computed tomography of wood-adhesive bondlines: Attenuation and phase-contrast effects

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Paris, Jesse L.; Kamke, Frederick A.; Xiao, Xianghui

    2015-07-29

    Microscale X-ray computed tomography (XCT) is discussed as a technique for identifying 3D adhesive distribution in wood-adhesive bondlines. Visualization and material segmentation of the adhesives from the surrounding cellular structures require sufficient gray-scale contrast in the reconstructed XCT data. Commercial wood-adhesive polymers have similar chemical characteristics and density to wood cell wall polymers and therefore do not provide good XCT attenuation contrast in their native form. Here, three different adhesive types, namely phenol formaldehyde, polymeric diphenylmethane diisocyanate, and a hybrid polyvinyl acetate, are tagged with iodine such that they yield sufficient X-ray attenuation contrast. However, phase-contrast effects at material edgesmore » complicate image quality and segmentation in XCT data reconstructed with conventional filtered backprojection absorption contrast algorithms. A quantitative phase retrieval algorithm, which isolates and removes the phase-contrast effect, was demonstrated. The paper discusses and illustrates the balance between material X-ray attenuation and phase-contrast effects in all quantitative XCT analyses of wood-adhesive bondlines.« less

  10. MRI contrast agents and high-throughput screening by MRI

    DOE Patents [OSTI]

    Lu, Yi; Yigit, Mehmet Veysel; Mazumdar, Debapriya

    2013-10-29

    The present invention provides an MRI contrast agent, comprising: MRI contrast agent particles, and oligonucleotides, attached to the particles.

  11. Methods of visualizing graphs

    DOE Patents [OSTI]

    Wong, Pak C.; Mackey, Patrick S.; Perrine, Kenneth A.; Foote, Harlan P.; Thomas, James J.

    2008-12-23

    Methods for visualizing a graph by automatically drawing elements of the graph as labels are disclosed. In one embodiment, the method comprises receiving node information and edge information from an input device and/or communication interface, constructing a graph layout based at least in part on that information, wherein the edges are automatically drawn as labels, and displaying the graph on a display device according to the graph layout. In some embodiments, the nodes are automatically drawn as labels instead of, or in addition to, the label-edges.

  12. Assessment of contrast enhanced respiration managed cone-beam CT for image guided radiotherapy of intrahepatic tumors

    SciTech Connect (OSTI)

    Jensen, Nikolaj K. G.; Stewart, Errol; Imaging Research Lab, Robarts Research Institute, London, Ontario N6A 5B7; Imaging Program, Lawson Health Research Institute, London, Ontario N6C 2R5 ; Lock, Michael; Fisher, Barbara; Department of Oncology, University of Western Ontario, London, Ontario N6A 4L6 ; Kozak, Roman; Chen, Jeff; Department of Oncology, University of Western Ontario, London, Ontario N6A 4L6; Department of Medical Biophysics, University of Western Ontario, London, Ontario N6A 5C1 ; Lee, Ting-Yim; Imaging Research Lab, Robarts Research Institute, London, Ontario N6A 5B7; Imaging Program, Lawson Health Research Institute, London, Ontario N6C 2R5; Department of Oncology, University of Western Ontario, London, Ontario N6A 4L6; Department of Medical Biophysics, University of Western Ontario, London, Ontario N6A 5C1 ; Wong, Eugene; Department of Oncology, University of Western Ontario, London, Ontario N6A 4L6; Department of Medical Biophysics, University of Western Ontario, London, Ontario N6A 5C1; Department of Physics and Astronomy, University of Western Ontario, London, Ontario N6A 3K7

    2014-05-15

    Purpose: Contrast enhancement and respiration management are widely used during image acquisition for radiotherapy treatment planning of liver tumors along with respiration management at the treatment unit. However, neither respiration management nor intravenous contrast is commonly used during cone-beam CT (CBCT) image acquisition for alignment prior to radiotherapy. In this study, the authors investigate the potential gains of injecting an iodinated contrast agent in combination with respiration management during CBCT acquisition for liver tumor radiotherapy. Methods: Five rabbits with implanted liver tumors were subjected to CBCT with and without motion management and contrast injection. The acquired CBCT images were registered to the planning CT to determine alignment accuracy and dosimetric impact. The authors developed a simulation tool for simulating contrast-enhanced CBCT images from dynamic contrast enhanced CT imaging (DCE-CT) to determine optimal contrast injection protocols. The tool was validated against contrast-enhanced CBCT of the rabbit subjects and was used for five human patients diagnosed with hepatocellular carcinoma. Results: In the rabbit experiment, when neither motion management nor contrast was used, tumor centroid misalignment between planning image and CBCT was 9.2 mm. This was reduced to 2.8?mm when both techniques were employed. Tumors were not visualized in clinical CBCT images of human subjects. Simulated contrast-enhanced CBCT was found to improve tumor contrast in all subjects. Different patients were found to require different contrast injections to maximize tumor contrast. Conclusions: Based on the authors animal study, respiration managed contrast enhanced CBCT improves IGRT significantly. Contrast enhanced CBCT benefits from patient specific tracer kinetics determined from DCE-CT.

  13. Phase contrast portal imaging using synchrotron radiation

    SciTech Connect (OSTI)

    Umetani, K.; Kondoh, T.

    2014-07-15

    Microbeam radiation therapy is an experimental form of radiation treatment with great potential to improve the treatment of many types of cancer. We applied a synchrotron radiation phase contrast technique to portal imaging to improve targeting accuracy for microbeam radiation therapy in experiments using small animals. An X-ray imaging detector was installed 6.0 m downstream from an object to produce a high-contrast edge enhancement effect in propagation-based phase contrast imaging. Images of a mouse head sample were obtained using therapeutic white synchrotron radiation with a mean beam energy of 130 keV. Compared to conventional portal images, remarkably clear images of bones surrounding the cerebrum were acquired in an air environment for positioning brain lesions with respect to the skull structure without confusion with overlapping surface structures.

  14. An Assessment of Visual Testing

    SciTech Connect (OSTI)

    Cumblidge, Stephen E.; Anderson, Michael T.; Doctor, Steven R.

    2004-11-01

    In response to increasing interest from nuclear utilities in replacing some volumetric examinations of nuclear reactor components with remote visual testing, the Pacific Northwest National Laboratory has examined the capabilities of remote visual testing for the Nuclear Regulatory Commission. This report describes visual testing and explores the visual acuities of the camera systems used to examine nuclear reactor components. The types and sizes of cracks typically found in nuclear reactor components are reviewed. The current standards in visual testing are examined critically, and several suggestions for improving these standards are proposed. Also proposed for future work is a round robin test to determine the effectiveness of visual tests and experimental studies to determine the values for magnification and resolution needed to reliably image very tight cracks.

  15. Exogenous contrast agents for thermoacoustic imaging: An investigation into the underlying sources of contrast

    SciTech Connect (OSTI)

    Ogunlade, Olumide Beard, Paul

    2015-01-15

    Purpose: Thermoacoustic imaging at microwave excitation frequencies is limited by the low differential contrast exhibited by high water content tissues. To overcome this, exogenous thermoacoustic contrast agents based on gadolinium compounds, iron oxide, and single wall carbon nanotubes have previously been suggested and investigated. However, these previous studies did not fully characterize the electric, magnetic, and thermodynamic properties of these agents thus precluding identification of the underlying sources of contrast. To address this, measurements of the complex permittivity, complex permeability, DC conductivity, and Grüneisen parameter have been made. These measurements allowed the origins of the contrast provided by each substance to be identified. Methods: The electric and magnetic properties of the contrast agents were characterized at 3 GHz using two rectangular waveguide cavities. The DC conductivity was measured separately using a conductivity meter. Thermoacoustic signals were then acquired and compared to those generated in water. Finally, 3D electromagnetic simulations were used to decouple the different contributions to the absorbed power density. Results: It was found that the gadolinium compounds provided appreciable electric contrast but not originating from the gadolinium itself. The contrast was either due to dissociation of the gadolinium salt which increased ionic conductivity or its nondissociated polar fraction which increased dielectric polarization loss or a combination of both. In addition, very high concentrations were required to achieve appreciable contrast, to the extent that the Grüneisen parameter increased significantly and became a source of contrast. Iron oxide particles were found to produce low but measurable dielectric contrast due to dielectric polarization loss, but this is attributed to the coating of the particles not the iron oxide. Single wall carbon nanotubes did not provide measurable contrast of any type. Conclusions: It is concluded that gadolinium based contrast agents, iron oxide particles, and single walled carbon nanotubes have little intrinsic merit as thermoacoustic contrast agents. Simple electrolytes such as saline which yield high contrast based on ionic conductivity provide much higher dielectric contrast per unit solute concentration and are likely to be significantly more effective as contrast agents.

  16. Scientific Visualization, Seeing the Unseeable

    ScienceCinema (OSTI)

    LBNL

    2009-09-01

    June 24, 2008 Berkeley Lab lecture: Scientific visualization transforms abstract data into readily comprehensible images, provide a vehicle for "seeing the unseeable," and play a central role in bo... June 24, 2008 Berkeley Lab lecture: Scientific visualization transforms abstract data into readily comprehensible images, provide a vehicle for "seeing the unseeable," and play a central role in both experimental and computational sciences. Wes Bethel, who heads the Scientific Visualization Group in the Computational Research Division, presents an overview of visualization and computer graphics, current research challenges, and future directions for the field.

  17. Embedded high-contrast distributed grating structures

    DOE Patents [OSTI]

    Zubrzycki, Walter J.; Vawter, Gregory A.; Allerman, Andrew A.

    2002-01-01

    A new class of fabrication methods for embedded distributed grating structures is claimed, together with optical devices which include such structures. These new methods are the only known approach to making defect-free high-dielectric contrast grating structures, which are smaller and more efficient than are conventional grating structures.

  18. Phased Contrast X-Ray Imaging

    ScienceCinema (OSTI)

    Erin Miller

    2012-12-31

    The Pacific Northwest National Laboratory is developing a range of technologies to broaden the field of explosives detection. Phased contrast X-ray imaging, which uses silicon gratings to detect distortions in the X-ray wave front, may be applicable to mail or luggage scanning for explosives; it can also be used in detecting other contraband, small-parts inspection, or materials characterization.

  19. Data visualization methods, data visualization devices, data visualization apparatuses, and articles of manufacture

    SciTech Connect (OSTI)

    Turner, Alan E.; Crow, Vernon L.; Payne, Deborah A.; Hetzler, Elizabeth G.; Cook, Kristin A.; Cowley, Wendy E.

    2015-06-30

    Data visualization methods, data visualization devices, data visualization apparatuses, and articles of manufacture are described according to some aspects. In one aspect, a data visualization method includes accessing a plurality of initial documents at a first moment in time, first processing the initial documents providing processed initial documents, first identifying a plurality of first associations of the initial documents using the processed initial documents, generating a first visualization depicting the first associations, accessing a plurality of additional documents at a second moment in time after the first moment in time, second processing the additional documents providing processed additional documents, second identifying a plurality of second associations of the additional documents and at least some of the initial documents, wherein the second identifying comprises identifying using the processed initial documents and the processed additional documents, and generating a second visualization depicting the second associations.

  20. Visualization Contest Applications due August 3

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualization Contest Applications due August 3 Visualization Contest Applications due August 3 June 22, 2012 by Francesca Verdier In support of the IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV) 2012's visualization contest, LDAV organizers are offering compute time to participants through a NERSC allocation awarded by ASCR. The LDAV Visualization Contest focuses on the area of visualization of extremely large datasets. The goal is to devise a visualization or a

  1. Mirror: Visually reflecting C{sup ++}

    SciTech Connect (OSTI)

    Orosco, R.; Campo, M.; Sole, J.P.

    1995-12-31

    Reflection is the ability of a system to inspect and change a model of itself. This ability allows to transparently control and extend the functionality of an existing system without performing any changes to the system itself. In dynamic object-oriented languages like CLOS or Smalltalk. the reflective ability is supported directly by the language. In C++, in contrast, reflection must be provided by some form of code annotation and pre-processing. In most cases, this approach either requires modification of the system code, or just supports the reflection of entire classes but not the reflection of determined objects. This work presents the Mirror environment that supports C++ reflective programming through visual association of meta-classes to classes. It allows full transparent reflection of objects using three-dimensional presentations of the different architecture levels. The environment adds reflective ability to C++ classes without any code modification visible to the user, as well as dynamically selective reflection of objects.

  2. Phase contrast in high resolution electron microscopy

    DOE Patents [OSTI]

    Rose, H.H.

    1975-09-23

    This patent relates to a device for developing a phase contrast signal for a scanning transmission electron microscope. The lens system of the microscope is operated in a condition of defocus so that predictable alternate concentric regions of high and low electron density exist in the cone of illumination. Two phase detectors are placed beneath the object inside the cone of illumination, with the first detector having the form of a zone plate, each of its rings covering alternate regions of either higher or lower electron density. The second detector is so configured that it covers the regions of electron density not covered by the first detector. Each detector measures the number of electrons incident thereon and the signal developed by the first detector is subtracted from the signal developed by the record detector to provide a phase contrast signal. (auth)

  3. Visual Sample Plan

    Energy Science and Technology Software Center (OSTI)

    2007-10-25

    VSP selects the appropriate number and location of environmental samples to ensure that the results of statistical tests performed to provide input to risk decisions have the required confidence and performance. VSP Version 5.0 provides sample-size equations or algorithms needed by specific statistical tests appropriate for specific environmental sampling objectives. It also provides data quality assessment and statistical analysis functions to support evaluation of the data and determine whether the data support decisions regarding sitesmore » suspected of contamination. The easy-to-use program is highly visual and graphic. VSP runs on personal computers with Microsoft Windows operating systems (98, NT, 2000, Millennium Edition, CE, and XP) Designed primarily for project managers and users without expertise in statistics, VSP is applicable to two- and three-dimensional populations to be sampled (e.g., rooms and buildings, surface soil, a defined layer of subsurface soil, water bodies, and other similar applications) for studies of environmental quality. VSP is also applicable for designing sampling plans for assessing chem./rad/bio threat and hazard identification within rooms and buildings, and for designing geophysical surveys for UXO identification.« less

  4. Contrasting behavior of intermediate-range order structures in...

    Office of Scientific and Technical Information (OSTI)

    Journal Article: Contrasting behavior of intermediate-range order structures in jadeite glass and melt Citation Details In-Document Search Title: Contrasting behavior of ...

  5. Collaboration Topics - Visualization | National Nuclear Security

    National Nuclear Security Administration (NNSA)

    Administration Visualization This collaboration area focuses on visualization and data analysis and centers on the open source development of the Visualization Toolkit (VTK), which forms the basis of our customized visualization and analysis tools (ParaView, VisIt and LOVE). We are partnering on common VTK needs and working on methods for visualizing and analyzing data on advanced architectures that are memory and I/O constrained. Accomplishments 1) Portions of the CEA visualization tool

  6. Visualizing Individual Carbon Nanotubes with Optical Microscopy...

    Office of Scientific and Technical Information (OSTI)

    Published Article: Visualizing Individual Carbon Nanotubes with Optical Microscopy Title: Visualizing Individual Carbon Nanotubes with Optical Microscopy Authors: Novak, Michael A. ...

  7. Visualization of Bacterial Microcompartment Facet Assembly Using...

    Office of Scientific and Technical Information (OSTI)

    Visualization of Bacterial Microcompartment Facet Assembly Using High-Speed Atomic Force Microscopy Prev Next Title: Visualization of Bacterial Microcompartment Facet ...

  8. Visualization Gallery from the Computational Research Division...

    Office of Scientific and Technical Information (OSTI)

    Particle Acceleration Data; 2) Visualization of Microearthquake Data from Enhanced Geothermal Systems; 3) PointCloudXplore: Visualization and Analysis of 3D Gene Expression Data; ...

  9. NREL: Energy Systems Integration Facility - Visualization of...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualization of Electric Power System Information Workshop The Energy Systems Integration Facility workshop, Visualization of Electric Power System Information, was held September...

  10. Visual Design Group | The Ames Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visual Design Group Ames Laboratory Logos You are here Home Visual Design Group Graphics Services supports the design, printing and production needs of the Ames Laboratory. For...

  11. Ocean Thermal Extractable Energy Visualization: Final Technical...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Ocean Thermal Extractable Energy Visualization: Final Technical Report Ocean Thermal Extractable Energy Visualization: Final Technical Report Report about the Ocean Thermal ...

  12. Photoacoustic phasoscopy super-contrast imaging

    SciTech Connect (OSTI)

    Gao, Fei; Feng, Xiaohua; Zheng, Yuanjin

    2014-05-26

    Phasoscopy is a recently proposed concept correlating electromagnetic (EM) absorption and scattering properties based on energy conservation. Phase information can be extracted from EM absorption induced acoustic wave and scattered EM wave for biological tissue characterization. In this paper, an imaging modality, termed photoacoustic phasoscopy imaging (PAPS), is proposed and verified experimentally based on phasoscopy concept with laser illumination. Both endogenous photoacoustic wave and scattered photons are collected simultaneously to extract the phase information. The PAPS images are then reconstructed on vessel-mimicking phantom and ex vivo porcine tissues to show significantly improved contrast than conventional photoacoustic imaging.

  13. Dynamic visualization of data streams

    DOE Patents [OSTI]

    Wong, Pak Chung (Richalnd, WA); Foote, Harlan P. (Richland, WA); Adams, Daniel R. (Kennewick, WA); Cowley, Wendy E. (Richland, WA); Thomas, James J. (Richland, WA)

    2009-07-07

    One embodiment of the present invention includes a data communication subsystem to receive a data stream, and a data processing subsystem responsive to the data communication subsystem to generate a visualization output based on a group of data vectors corresponding to a first portion of the data stream. The processing subsystem is further responsive to a change in rate of receipt of the data to modify the visualization output with one or more other data vectors corresponding to a second portion of the data stream as a function of eigenspace defined with the group of data vectors. The system further includes a display device responsive to the visualization output to provide a corresponding visualization.

  14. Data mining and visualization techniques

    DOE Patents [OSTI]

    Wong, Pak Chung; Whitney, Paul; Thomas, Jim

    2004-03-23

    Disclosed are association rule identification and visualization methods, systems, and apparatus. An association rule in data mining is an implication of the form X.fwdarw.Y where X is a set of antecedent items and Y is the consequent item. A unique visualization technique that provides multiple antecedent, consequent, confidence, and support information is disclosed to facilitate better presentation of large quantities of complex association rules.

  15. Absorption and Phase Contrast X-Ray Imaging in Paleontology Using Laboratory and Synchrotron Sources

    SciTech Connect (OSTI)

    Bidola, Pidassa; Stockmar, Marco; Achterhold, Klaus; Pfeiffer, Franz; Pacheco, Mirian L.A.F.; Soriano, Carmen; Beckmann, Felix; Herzen, Julia

    2015-10-01

    X-ray micro-computed tomography (CT) is commonly used for imaging of samples in biomedical or materials science research. Owing to the ability to visualize a sample in a nondestructive way, X-ray CT is perfectly suited to inspect fossilized specimens, which are mostly unique or rare. In certain regions of the world where important sedimentation events occurred in the Precambrian geological time, several fossilized animals are studied to understand questions related to their origin, environment, and life evolution. This article demonstrates the advantages of applying absorption and phase-contrast CT on the enigmatic fossil Corumbella werneri, one of the oldest known animals capable of building hard parts, originally discovered in Corumba (Brazil). Different tomographic setups were tested to visualize the fossilized inner structures: a commercial laboratory-based CT device, two synchrotron-based imaging setups using conventional absorption and propagation-based phase contrast, and a commercial X-ray microscope with a lens-coupled detector system, dedicated for radiography and tomography. Based on our results we discuss the strengths and weaknesses of the different imaging setups for paleontological studies.

  16. VCAT: Visual Crosswalk Analysis Tool

    SciTech Connect (OSTI)

    Cleland, Timothy J.; Forslund, David W.; Cleland, Catherine A.

    2012-08-31

    VCAT is a knowledge modeling and analysis tool. It was synthesized from ideas in functional analysis, business process modeling, and complex network science. VCAT discovers synergies by analyzing natural language descriptions. Specifically, it creates visual analytic perspectives that capture intended organization structures, then overlays the serendipitous relationships that point to potential synergies within an organization or across multiple organizations.

  17. Data sonification and sound visualization.

    SciTech Connect (OSTI)

    Kaper, H. G.; Tipei, S.; Wiebel, E.; Mathematics and Computer Science; Univ. of Illinois

    1999-07-01

    Sound can help us explore and analyze complex data sets in scientific computing. The authors describe a digital instrument for additive sound synthesis (Diass) and a program to visualize sounds in a virtual reality environment (M4Cave). Both are part of a comprehensive music composition environment that includes additional software for computer-assisted composition and automatic music notation.

  18. Apparatus for separating particles utilizing engineered acoustic contrast capture particles

    DOE Patents [OSTI]

    Kaduchak, Gregory; Ward, Michael D

    2016-05-17

    An apparatus for separating particles from a medium includes a capillary defining a flow path therein that is in fluid communication with a medium source. The medium source includes engineered acoustic contrast capture particle having a predetermined acoustic contrast. The apparatus includes a vibration generator that is operable to produce at least one acoustic field within the flow path. The acoustic field produces a force potential minima for positive acoustic contrast particles and a force potential minima for negative acoustic contrast particles in the flow path and drives the engineered acoustic contrast capture particles to either the force potential minima for positive acoustic contrast particles or the force potential minima for negative acoustic contrast particles.

  19. Apparatus for separating particles utilizing engineered acoustic contrast capture particles

    DOE Patents [OSTI]

    Kaduchak, Gregory; Ward, Michael D

    2014-10-21

    An apparatus for separating particles from a medium includes a capillary defining a flow path therein that is in fluid communication with a medium source. The medium source includes engineered acoustic contrast capture particle having a predetermined acoustic contrast. The apparatus includes a vibration generator that is operable to produce at least one acoustic field within the flow path. The acoustic field produces a force potential minima for positive acoustic contrast particles and a force potential minima for negative acoustic contrast particles in the flow path and drives the engineered acoustic contrast capture particles to either the force potential minima for positive acoustic contrast particles or the force potential minima for negative acoustic contrast particles.

  20. Apparatus for separating particles utilizing engineered acoustic contrast capture particles

    DOE Patents [OSTI]

    Kaduchak, Gregory; Ward, Michael D.

    2011-12-27

    An apparatus for separating particles from a medium includes a capillary defining a flow path therein that is in fluid communication with a medium source. The medium source includes engineered acoustic contrast capture particle having a predetermined acoustic contrast. The apparatus includes a vibration generator that is operable to produce at least one acoustic field within the flow path. The acoustic field produces a force potential minima for positive acoustic contrast particles and a force potential minima for negative acoustic contrast particles in the flow path and drives the engineered acoustic contrast capture particles to either the force potential minima for positive acoustic contrast particles or the force potential minima for negative acoustic contrast particles.

  1. Visualization Contest Applications due August 3

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Contest Applications due August 3 June 22, 2012 by Francesca Verdier In support of the IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV) 2012's visualization...

  2. Visualization Graph | OpenEI Community

    Open Energy Info (EERE)

    8 August, 2012 - 12:37 New Gapminder Visualizations Added EIA Energy data Gapminder OECD OpenEI SEDS Visualization Graph OpenEI now features some cool new Gapminder...

  3. Energy Integration Visualization Room (Fact Sheet)

    SciTech Connect (OSTI)

    Not Available

    2012-08-01

    This two-page fact sheet describes the new Energy Integration Visualization Room in the ESIF and talks about some of the capabilities and unique visualization features of the the room.

  4. An interpersonal multimedia visualization system

    SciTech Connect (OSTI)

    Phillips, R.L.

    1990-01-01

    Media View is a computer program that provides a generic infrastructure for authoring and interacting with multimedia documents. Among its many applications is the ability to furnish a user with a comprehensive environment for analysis and visualization. With MediaView the user produces a document'' that contains mathematics, datasets and associated visualizations. From the dataset or embedded mathematics animated sequences can be produced in situ. The mathematical content of the document'' can be explored through manipulation with Mathematica {trademark}. Since the document'' is all digital, it can be shared with a co-worker on a local network or mailed electronically to a colleague at a distant site. Animations and any other substructure of the document'' persist through the mailing process and can be awakened at the destination by the recipient. 5 refs., 4 figs.

  5. Cognitive Foundations for Visual Analytics

    SciTech Connect (OSTI)

    Greitzer, Frank L.; Noonan, Christine F.; Franklin, Lyndsey

    2011-02-25

    In this report, we provide an overview of scientific/technical literature on information visualization and VA. Topics discussed include an update and overview of the extensive literature search conducted for this study, the nature and purpose of the field, major research thrusts, and scientific foundations. We review methodologies for evaluating and measuring the impact of VA technologies as well as taxonomies that have been proposed for various purposes to support the VA community. A cognitive science perspective underlies each of these discussions.

  6. MemAxes Visualization Software

    Energy Science and Technology Software Center (OSTI)

    2014-08-28

    Hardware advancements such as Intel's PEBS and AMD's IBS, as well as software developments such as the perf_event API in Linux have made available the acquisition of memory access samples with performance information. MemAxes is a visualization and analysis tool for memory access sample data. By mapping the samples to their associated code, variables, node topology, and application dataset, MemAxes provides intuitive views of the data.

  7. Visualizing Cyber Security: Usable Workspaces

    SciTech Connect (OSTI)

    Fink, Glenn A.; North, Christopher L.; Endert, Alexander; Rose, Stuart J.

    2009-10-11

    An environment that supports cyber analytics work should enable multiple, simultaneous investigations, information foraging, and provide a solution space for organizing data. We describe our study of cyber security professionals and visualizations in a large, high-resolution display work environment. We discuss the tasks and needs of analysts that such an environment can support and present several prototypes designed to support these needs. We conclude with a usability evaluation of the prototypes and additional lessons learned.

  8. Visual Interface for Materials Simulations

    Energy Science and Technology Software Center (OSTI)

    2004-08-01

    VIMES (Visual Inteface for Materials Simulations) is a graphical user interface (GUI) for pre- and post-processing alomistic materials science calculations. The code includes tools for building and visualizing simple crystals, supercells, and surfaces, as well as tools for managing and modifying the input to Sandia materials simulations codes such as Quest (Peter Schultz, SNL 9235) and Towhee (Marcus Martin, SNL 9235). It is often useful to have a graphical interlace to construct input for materialsmore » simulations codes and to analyze the output of these programs. VIMES has been designed not only to build and visualize different materials systems, but also to allow several Sandia codes to be easier to use and analyze. Furthermore. VIMES has been designed to be reasonably easy to extend to new materials programs. We anticipate that users of Sandia materials simulations codes will use VIMCS to simplify the submission and analysis of these simulations. VIMES uses standard OpenGL graphics (as implemented in the Python programming language) to display the molecules. The algorithms used to rotate, zoom, and pan molecules are all standard applications using the OpenGL libraries. VIMES uses the Marching Cubes algorithm for isosurfacing 3D data such as molecular orbitals or electron densities around the molecules.« less

  9. Visual Interface for Materials Simulations

    SciTech Connect (OSTI)

    2004-08-01

    VIMES (Visual Inteface for Materials Simulations) is a graphical user interface (GUI) for pre- and post-processing alomistic materials science calculations. The code includes tools for building and visualizing simple crystals, supercells, and surfaces, as well as tools for managing and modifying the input to Sandia materials simulations codes such as Quest (Peter Schultz, SNL 9235) and Towhee (Marcus Martin, SNL 9235). It is often useful to have a graphical interlace to construct input for materials simulations codes and to analyze the output of these programs. VIMES has been designed not only to build and visualize different materials systems, but also to allow several Sandia codes to be easier to use and analyze. Furthermore. VIMES has been designed to be reasonably easy to extend to new materials programs. We anticipate that users of Sandia materials simulations codes will use VIMCS to simplify the submission and analysis of these simulations. VIMES uses standard OpenGL graphics (as implemented in the Python programming language) to display the molecules. The algorithms used to rotate, zoom, and pan molecules are all standard applications using the OpenGL libraries. VIMES uses the Marching Cubes algorithm for isosurfacing 3D data such as molecular orbitals or electron densities around the molecules.

  10. Localized surface plasmon assisted contrast microscopy for ultrathin transparent specimens

    SciTech Connect (OSTI)

    Wei, Feifei; Lu, Dylan; Aguinaldo, Ryan; Ma, Yicong; Sinha, Sunil K.; Liu, Zhaowei

    2014-10-20

    We demonstrate a high contrast imaging technique, termed localized surface plasmon assisted contrast microscopy, by combining localized surface plasmon resonances (LSPR) and dark-field microscopy technique. Due to the sensitive response of LSPR to the refractive index of the surrounding media, this technique is capable of converting a small refractive index difference to a change in scattering intensity, resulting in a high-contrast, diffraction limited image of a thin unstained specimen with small, gradual refractive-index variation.

  11. Visualization Tools for Adaptive Mesh Refinement Data

    SciTech Connect (OSTI)

    Weber, Gunther H.; Beckner, Vincent E.; Childs, Hank; Ligocki,Terry J.; Miller, Mark C.; Van Straalen, Brian; Bethel, E. Wes

    2007-05-09

    Adaptive Mesh Refinement (AMR) is a highly effective method for simulations that span a large range of spatiotemporal scales, such as astrophysical simulations that must accommodate ranges from interstellar to sub-planetary. Most mainstream visualization tools still lack support for AMR as a first class data type and AMR code teams use custom built applications for AMR visualization. The Department of Energy's (DOE's) Science Discovery through Advanced Computing (SciDAC) Visualization and Analytics Center for Enabling Technologies (VACET) is currently working on extending VisIt, which is an open source visualization tool that accommodates AMR as a first-class data type. These efforts will bridge the gap between general-purpose visualization applications and highly specialized AMR visual analysis applications. Here, we give an overview of the state of the art in AMR visualization research and tools and describe how VisIt currently handles AMR data.

  12. Visualization of Scalar Adaptive Mesh Refinement Data

    SciTech Connect (OSTI)

    VACET; Weber, Gunther; Weber, Gunther H.; Beckner, Vince E.; Childs, Hank; Ligocki, Terry J.; Miller, Mark C.; Van Straalen, Brian; Bethel, E. Wes

    2007-12-06

    Adaptive Mesh Refinement (AMR) is a highly effective computation method for simulations that span a large range of spatiotemporal scales, such as astrophysical simulations, which must accommodate ranges from interstellar to sub-planetary. Most mainstream visualization tools still lack support for AMR grids as a first class data type and AMR code teams use custom built applications for AMR visualization. The Department of Energy's (DOE's) Science Discovery through Advanced Computing (SciDAC) Visualization and Analytics Center for Enabling Technologies (VACET) is currently working on extending VisIt, which is an open source visualization tool that accommodates AMR as a first-class data type. These efforts will bridge the gap between general-purpose visualization applications and highly specialized AMR visual analysis applications. Here, we give an overview of the state of the art in AMR scalar data visualization research.

  13. Laser speckle contrast imaging of skin blood perfusion responses...

    Office of Scientific and Technical Information (OSTI)

    We report application of laser speckle contrast imaging (LSCI), i.e., a fast imaging technique utilising backscattered light to distinguish such moving objects as red blood cells ...

  14. Contrasting Behavior of Carbon Nucleation in the Initial Stages...

    Office of Scientific and Technical Information (OSTI)

    of Graphene Epitaxial Growth on Stepped Metal Surfaces Citation Details In-Document Search Title: Contrasting Behavior of Carbon Nucleation in the Initial Stages of Graphene ...

  15. Visual-servoing optical microscopy

    DOE Patents [OSTI]

    Callahan, Daniel E; Parvin, Bahram

    2013-10-01

    The present invention provides methods and devices for the knowledge-based discovery and optimization of differences between cell types. In particular, the present invention provides visual servoing optical microscopy, as well as analysis methods. The present invention provides means for the close monitoring of hundreds of individual, living cells over time; quantification of dynamic physiological responses in multiple channels; real-time digital image segmentation and analysis; intelligent, repetitive computer-applied cell stress and cell stimulation; and the ability to return to the same field of cells for long-term studies and observation. The present invention further provides means to optimize culture conditions for specific subpopulations of cells.

  16. Visual-servoing optical microscopy

    DOE Patents [OSTI]

    Callahan, Daniel E.; Parvin, Bahram

    2009-06-09

    The present invention provides methods and devices for the knowledge-based discovery and optimization of differences between cell types. In particular, the present invention provides visual servoing optical microscopy, as well as analysis methods. The present invention provides means for the close monitoring of hundreds of individual, living cells over time: quantification of dynamic physiological responses in multiple channels; real-time digital image segmentation and analysis; intelligent, repetitive computer-applied cell stress and cell stimulation; and the ability to return to the same field of cells for long-term studies and observation. The present invention further provides means to optimize culture conditions for specific subpopulations of cells.

  17. Visual-servoing optical microscopy

    DOE Patents [OSTI]

    Callahan, Daniel E.; Parvin, Bahram

    2011-05-24

    The present invention provides methods and devices for the knowledge-based discovery and optimization of differences between cell types. In particular, the present invention provides visual servoing optical microscopy, as well as analysis methods. The present invention provides means for the close monitoring of hundreds of individual, living cells over time; quantification of dynamic physiological responses in multiple channels; real-time digital image segmentation and analysis; intelligent, repetitive computer-applied cell stress and cell stimulation; and the ability to return to the same field of cells for long-term studies and observation. The present invention further provides means to optimize culture conditions for specific subpopulations of cells.

  18. Visualizing Twenty Years of Applications

    SciTech Connect (OSTI)

    Potel, Mike; Wong, Pak C.

    2014-11-01

    This issue of IEEE Computer Graphics and Applications marks the 20th anniversary of the Applications department as a regular feature of the magazine. We thought it might be interesting to look back at the 20 years of Applications department articles to assess its evolution over that time. By aggregating all twenty years of articles and applying a little statistical and visual analytics, we’ve uncovered some interesting characteristics and trends we thought we’d share to mark this 20 year milestone.

  19. Visual Analysis of Weblog Content

    SciTech Connect (OSTI)

    McColgin, David W.; Cramer, Nicholas O.; Gregory, Michelle L.; Payne, Deborah A.; Love, Douglas V.

    2007-03-26

    ABSTRACT In this demo we present an analytic tool that provides a comprehensive approach to weblog analysis. We have combined ingest tools that have been designed to work with the special characteristics of blog data with a mature visual analytic tool designed for in-depth document analysis. Using a subset of the Buzz Metrics data, we demonstrate how this combination of tools provides users with the capability to analyze blogs in multiple languages, investigate changes over time, and investigate the affect of blogs.

  20. Visual Analysis of Weblog Content

    SciTech Connect (OSTI)

    Gregory, Michelle L.; Payne, Deborah A.; McColgin, Dave; Cramer, Nick O.; Love, Douglas V.

    2007-03-26

    In recent years, one of the advances of the World Wide Web is social media and one of the fastest growing aspects of social media is the blogosphere. Blogs make content creation easy and are highly accessible through web pages and syndication. With their growing influence, a need has arisen to be able to monitor the opinions and insight revealed within their content. In this paper we describe a technical approach for analyzing the content of blog data using a visual analytic tool, IN-SPIRE, developed by Pacific Northwest National Laboratory. We highlight the capabilities of this tool that are particularly useful for information gathering from blog data.

  1. Ocean Thermal Extractable Energy Visualization

    SciTech Connect (OSTI)

    Ascari, Matthew

    2012-10-28

    The Ocean Thermal Extractable Energy Visualization (OTEEV) project focuses on assessing the Maximum Practicably Extractable Energy (MPEE) from the world’s ocean thermal resources. MPEE is defined as being sustainable and technically feasible, given today’s state-of-the-art ocean energy technology. Under this project the OTEEV team developed a comprehensive Geospatial Information System (GIS) dataset and software tool, and used the tool to provide a meaningful assessment of MPEE from the global and domestic U.S. ocean thermal resources.

  2. Video-Visuals | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Video-Visuals Video-Visuals See how we can generate clean, renewable energy from hot water sources deep beneath the Earth's surface. The video highlights the basic principles at work in geothermal energy production, and illustrates three different ways the Earth's heat can be converted into electricity. Multimedia resources at the United States Department of Energy help to message geothermal development visually through video, photographs, renderings of the subsurface, and resource maps. Video /

  3. Visualizing Electric Vehicle Sales | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Visualizing Electric Vehicle Sales Visualizing Electric Vehicle Sales July 25, 2013 - 2:48pm Addthis Data compiled by Yan (Joann) Zhou at Argonne National Laboratory. (*) Sales from the second quarter of 2013 for Tesla Model S are based off of estimates provided by the Hybrid Market Dashboard. Data updated 1/20/15. Daniel Wood Daniel Wood Data Visualization and Cartographic Specialist, Office of Public Affairs More on eGallon: Read more about electric vehicle sales and eGallon's continued

  4. Mini-review of Electron Density Visualization

    SciTech Connect (OSTI)

    Adler, Joan; Adler, Omri; Kreif, Meytal; Cohen, Or; Grosso, Bastien; Hashibon, Adham; Cooper, Valentino R

    2015-01-01

    We describe both educational and research oriented examples of electronic density visualization with AViz. Several detailed cases are presented and the procedures for their preparation are described.

  5. Visualizing the Onset of "Heavy Electron" Superconductivity ...

    Office of Science (SC) Website

    Visualizing the Onset of "Heavy Electron" Superconductivity Basic Energy Sciences (BES) BES Home ... Funding DOE Office of Science, Basic Energy Sciences program provided primary ...

  6. Nanoparticle Research Creates Great Contrast | GE Global Research

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nanoparticle Research Creates Great Contrast Click to email this to a friend (Opens in new window) Share on Facebook (Opens in new window) Click to share (Opens in new window) Click to share on LinkedIn (Opens in new window) Click to share on Tumblr (Opens in new window) Nanoparticle Research Creates Great Contrast Mike Marino 2011.03.29 Mike-Marino Contrast. It's not just a setting on the TV - it's also a critical part of how doctors practice medicine today. Looking inside the body to see

  7. Magnetic field induced differential neutron phase contrast imaging

    SciTech Connect (OSTI)

    Strobl, M.; Treimer, W.; Walter, P.; Keil, S.; Manke, I.

    2007-12-17

    Besides the attenuation of a neutron beam penetrating an object, induced phase changes have been utilized to provide contrast in neutron and x-ray imaging. In analogy to differential phase contrast imaging of bulk samples, the refraction of neutrons by magnetic fields yields image contrast. Here, it will be reported how double crystal setups can provide quantitative tomographic images of magnetic fields. The use of magnetic air prisms adequate to split the neutron spin states enables a distinction of field induced phase shifts and these introduced by interaction with matter.

  8. Poster Thur Eve 16: 4DCT simulation with synchronized contrast injection of liver SBRT patients

    SciTech Connect (OSTI)

    Karotki, A.; Korol, R.; Milot, L.; Chu, W.; Chung, H. T.; Erler, D.

    2014-08-15

    Stereotactic body radiation therapy (SBRT) has recently emerged as a valid option for treating liver metastases. SBRT delivers highly conformai dose over a small number of fractions. As such it is particularly sensitive to the accuracy of target volume delineation by the radiation oncologist. However, contouring liver metastases remains challenging for the following reasons. First, the liver usually undergoes significant motion due to respiration. Second, liver metastases are often nearly indistinguishable from the surrounding tissue when using computed tomography (CT) for imaging making it difficult to identify and delineate them. Both problems can be overcome by using four dimensional CT (4DCT) synchronized with intravenous contrast injection. We describe a novel CT simulation process which involves two 4DCT scans. The first scan captures the tumor and immediately surrounding tissue which in turn reduces the 4DCT scan time so that it can be optimally timed with intravenous contrast injection. The second 4DCT scan covers a larger volume and is used as the primary CT dataset for dose calculation, as well as patient setup verification on the treatment unit. The combination of two 4DCT scans, short and long, allows visualization of the liver metastases over all phases of breathing cycle while simultaneously acquiring long enough 4DCT dataset suitable for planning and patient setup verification.

  9. Contrast from rotating frame relaxation by adiabatic pulses

    DOE Patents [OSTI]

    Michaeli, Shalom; Garwood, Michael G.; Ugurbil, Kamil; Sorce, Dennis J.

    2007-10-09

    This document discusses, among other things, a system and method for modulating transverse and longitudinal relaxation time contrast in a rotating frame based on a train of radio frequency pulses.

  10. Visualizing Electric Vehicle Sales | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Visualizing Electric Vehicle Sales Visualizing Electric Vehicle Sales Data compiled by Yan (Joann) Zhou at Argonne National Laboratory. (*) Sales from the second quarter of 2013 for Tesla Model S are based off of estimates provided by the Hybrid Market Dashboard. Data updated 1/20/15.

  11. Occam's Razor and Petascale Visual Data Analysis

    SciTech Connect (OSTI)

    Bethel, E. Wes; Johnson, Chris; Ahern, Sean; Bell, John; Bremer, Peer-Timo; Childs, Hank; Cormier-Michel, Estelle; Day, Marc; Deines, Eduard; Fogal, Tom; Garth, Christoph; Geddes, Cameron; Hagen, Hans; Hamann, Bernd; Hansen, Charles; Jacobsen, Janet; Joy, Ken; Kruger, Jens; Meredith, Jeremy; Messmer, Peter; Ostrouchov, George; Pascucci, Valerio; Potter, Kristi; Prabhat, D.; Pugmire, David; Rubel, Oliver; Sanderson, Allen; Silva, Claudio; Ushizima, Daniela; Weber, Gunther; Whitlock, Brad; Wu, Kesheng

    2009-06-12

    One of the central challenges facing visualization research is how to effectively enable knowledge discovery. An effective approach will likely combine application architectures that are capable of running on today?s largest platforms to address the challenges posed by large data with visual data analysis techniques that help find, represent, and effectively convey scientifically interesting features and phenomena.

  12. Query-Driven Visualization and Analysis

    SciTech Connect (OSTI)

    Ruebel, Oliver; Bethel, E. Wes; Prabhat, Mr.; Wu, Kesheng

    2012-11-01

    This report focuses on an approach to high performance visualization and analysis, termed query-driven visualization and analysis (QDV). QDV aims to reduce the amount of data that needs to be processed by the visualization, analysis, and rendering pipelines. The goal of the data reduction process is to separate out data that is "scientifically interesting'' and to focus visualization, analysis, and rendering on that interesting subset. The premise is that for any given visualization or analysis task, the data subset of interest is much smaller than the larger, complete data set. This strategy---extracting smaller data subsets of interest and focusing of the visualization processing on these subsets---is complementary to the approach of increasing the capacity of the visualization, analysis, and rendering pipelines through parallelism. This report discusses the fundamental concepts in QDV, their relationship to different stages in the visualization and analysis pipelines, and presents QDV's application to problems in diverse areas, ranging from forensic cybersecurity to high energy physics.

  13. SAMPLES Visualization Tools V1.0

    Energy Science and Technology Software Center (OSTI)

    2000-01-17

    The SAMPLE Visualization Tools CD consists of a 2D Process Visualizer, 3D Visualizer, and integration code for use with AutoCAD uner Windows NT. The tools are intended to be an add-on package to the SAMPLES (Sandia Agile MEMS Prototyping, Layout Tools, Education and Services). Program CD, a previously published Sandia software package. The 2D Process Visualizer creates 2D cross-section slice views of a MEMS (micro-electromechanical)design. Views are created for each step in the MEMS fabricationmore » process. The 2D viewer has capabilities to pan, zoom, step forward and backward to allow the user to inspect the design. The 3D Visualizer creates an extruded-model view of a MEMS design. The 3D viewer has capabilities to pan, zoom, and fly around the model to allow the user to inspect the design.« less

  14. Computer systems and methods for visualizing data

    DOE Patents [OSTI]

    Stolte, Chris; Hanrahan, Patrick

    2010-07-13

    A method for forming a visual plot using a hierarchical structure of a dataset. The dataset comprises a measure and a dimension. The dimension consists of a plurality of levels. The plurality of levels form a dimension hierarchy. The visual plot is constructed based on a specification. A first level from the plurality of levels is represented by a first component of the visual plot. A second level from the plurality of levels is represented by a second component of the visual plot. The dataset is queried to retrieve data in accordance with the specification. The data includes all or a portion of the dimension and all or a portion of the measure. The visual plot is populated with the retrieved data in accordance with the specification.

  15. Speckle contrast diffuse correlation tomography of complex turbid medium flow

    SciTech Connect (OSTI)

    Huang, Chong; Irwin, Daniel; Lin, Yu; Shang, Yu; He, Lian; Kong, Weikai; Yu, Guoqiang; Luo, Jia

    2015-07-15

    Purpose: Developed herein is a three-dimensional (3D) flow contrast imaging system leveraging advancements in the extension of laser speckle contrast imaging theories to deep tissues along with our recently developed finite-element diffuse correlation tomography (DCT) reconstruction scheme. This technique, termed speckle contrast diffuse correlation tomography (scDCT), enables incorporation of complex optical property heterogeneities and sample boundaries. When combined with a reflectance-based design, this system facilitates a rapid segue into flow contrast imaging of larger, in vivo applications such as humans. Methods: A highly sensitive CCD camera was integrated into a reflectance-based optical system. Four long-coherence laser source positions were coupled to an optical switch for sequencing of tomographic data acquisition providing multiple projections through the sample. This system was investigated through incorporation of liquid and solid tissue-like phantoms exhibiting optical properties and flow characteristics typical of human tissues. Computer simulations were also performed for comparisons. A uniquely encountered smear correction algorithm was employed to correct point-source illumination contributions during image capture with the frame-transfer CCD and reflectance setup. Results: Measurements with scDCT on a homogeneous liquid phantom showed that speckle contrast-based deep flow indices were within 12% of those from standard DCT. Inclusion of a solid phantom submerged below the liquid phantom surface allowed for heterogeneity detection and validation. The heterogeneity was identified successfully by reconstructed 3D flow contrast tomography with scDCT. The heterogeneity center and dimensions and averaged relative flow (within 3%) and localization were in agreement with actuality and computer simulations, respectively. Conclusions: A custom cost-effective CCD-based reflectance 3D flow imaging system demonstrated rapid acquisition of dense boundary data and, with further studies, a high potential for translatability to real tissues with arbitrary boundaries. A requisite correction was also found for measurements in the fashion of scDCT to recover accurate speckle contrast of deep tissues.

  16. Multimedia Analysis plus Visual Analytics = Multimedia Analytics

    SciTech Connect (OSTI)

    Chinchor, Nancy; Thomas, James J.; Wong, Pak C.; Christel, Michael; Ribarsky, Martin W.

    2010-10-01

    Multimedia analysis has focused on images, video, and to some extent audio and has made progress in single channels excluding text. Visual analytics has focused on the user interaction with data during the analytic process plus the fundamental mathematics and has continued to treat text as did its precursor, information visualization. The general problem we address in this tutorial is the combining of multimedia analysis and visual analytics to deal with multimedia information gathered from different sources, with different goals or objectives, and containing all media types and combinations in common usage.

  17. Visual inspection reliability for precision manufactured parts

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    See, Judi E.

    2015-09-04

    Sandia National Laboratories conducted an experiment for the National Nuclear Security Administration to determine the reliability of visual inspection of precision manufactured parts used in nuclear weapons. In addition visual inspection has been extensively researched since the early 20th century; however, the reliability of visual inspection for nuclear weapons parts has not been addressed. In addition, the efficacy of using inspector confidence ratings to guide multiple inspections in an effort to improve overall performance accuracy is unknown. Further, the workload associated with inspection has not been documented, and newer measures of stress have not been applied.

  18. Visualization of Fuel Cell Water Transport and Performance Characteriz...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Visualization of Fuel Cell Water Transport and Performance Characterization under Freezing ... More Documents & Publications Visualization of Fuel Cell Water Transport and ...

  19. Visualization and Analysis of 3D Gene Expression Data (Technical...

    Office of Scientific and Technical Information (OSTI)

    Technical Report: Visualization and Analysis of 3D Gene Expression Data Citation Details In-Document Search Title: Visualization and Analysis of 3D Gene Expression Data Recent...

  20. John Papanikolas: Visualizing Charge Carrier Motion in Nanowires...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    John Papanikolas: Visualizing Charge Carrier Motion in Nanowires Using Femtosecond Pump-Pr... Visualizing Charge Carrier Motion in Nanowires Using Femtosecond Pump-Probe Microscopy ...

  1. Scalable Run Time Data Collection Analysis and Visualization...

    Office of Scientific and Technical Information (OSTI)

    Data Collection Analysis and Visualization (Presentation). Citation Details In-Document Search Title: Scalable Run Time Data Collection Analysis and Visualization (Presentation). ...

  2. Thematic World Wide Web Visualization System

    Energy Science and Technology Software Center (OSTI)

    1996-10-10

    WebTheme is a system designed to facilitate world wide web information access and retrieval through visualization. It consists of two principal pieces, a WebTheme Server which allows users to enter in a query and automatocally harvest and process information of interest, and a WebTheme browser, which allows users to work with both Galaxies and Themescape visualizations of their data within a JAVA capable world wide web browser. WebTheme is an Internet solution, meaning that accessmore » to the server and the resulting visualizations can all be performed through the use of a WWW browser. This allows users to access and interact with SPIRE (Spatial Paradigm for Information Retrieval and Exploration) based visualizations through a web browser regardless of what computer platforms they are running on. WebTheme is specifically designed to create databases by harvesting and processing WWW home pages available on the Internet.« less

  3. Visualizing Energy Resources Dynamically on Earth (VERDE)

    Energy Science and Technology Software Center (OSTI)

    2009-06-01

    VERDE is a software service that ingests data on real-time eneryg grid status and analyzes the data with models and algorithms presenting the output in a form that can be visualized by client spatio-temporal browsers

  4. Ontology-enriched Visualization of Human Anatomy

    SciTech Connect (OSTI)

    Pouchard, LC

    2005-12-20

    The project focuses on the problem of presenting a human anatomical 3D model associated with other types of human systemic information ranging from physiological to anatomical information while navigating the 3D model. We propose a solution that integrates a visual 3D interface and navigation features with the display of structured information contained in an ontology of anatomy where the structures of the human body are formally and semantically linked. The displayed and annotated anatomy serves as a visual entry point into a patient's anatomy, medical indicators and other information. The ontology of medical information provides labeling to the highlighted anatomical parts in the 3D display. Because of the logical organization and links between anatomical objects found in the ontology and associated 3D model, the analysis of a structure by a physician is greatly enhanced. Navigation within the 3D visualization and between this visualization and objects representing anatomical concepts within the model is also featured.

  5. BPA's Visual Guidelines Quick Guide - 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    35 The Visual Guidelines for BPA's Brand document can be found at www.bpa.govgotoBranding | Updated 2015 RGB 139 91 41 50 58 100 45 RGB 90 72 28 HEX 955300 HEX 5A481C 382 C...

  6. Visual Design Group | The Ames Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visual Design Group alternative text alternative text alternative text alternative text alternative text alternative text alternative text alternative text The Visual Design Group is a full-service graphics and video/animation studio serving the needs of Ames Laboratory and beyond. We offer a variety of services. Our graphics shop rates are $94/hour. There is no fee currently for our video and animation work. For Graphics Services work, please submit a request form here. For Video/Animation

  7. Finite Element Results Visualization for Unstructured Grids

    Energy Science and Technology Software Center (OSTI)

    1996-07-15

    GRIZ is a general-purpose post-processing application supporting interactive visualization of finite element analysis results on unstructured grids. In addition to basic pseudocolor renderings of state variables over the mesh surface, GRIZ provides modern visualization techniques such as isocontours and isosurfaces, cutting planes, vector field display, and particle traces. GRIZ accepts both command-line and mouse-driven input, and is portable to virtually any UNIX platform which provides Motif and OpenGl libraries.

  8. Building Adoption of Visual Analytics Software

    SciTech Connect (OSTI)

    Chinchor, Nancy; Cook, Kristin A.; Scholtz, Jean

    2012-01-05

    Adoption of technology is always difficult. Issues such as having the infrastructure necessary to support the technology, training for users, integrating the technology into current processes and tools, and having the time, managerial support, and necessary funds need to be addressed. In addition to these issues, the adoption of visual analytics tools presents specific challenges that need to be addressed. This paper discusses technology adoption challenges and approaches for visual analytics technologies.

  9. Differential phase contrast X-ray imaging system and components

    DOE Patents [OSTI]

    Stutman, Daniel; Finkenthal, Michael

    2014-07-01

    A differential phase contrast X-ray imaging system includes an X-ray illumination system, a beam splitter arranged in an optical path of the X-ray illumination system, and a detection system arranged in an optical path to detect X-rays after passing through the beam splitter.

  10. Visualization and Analysis in Support of Fusion Science

    SciTech Connect (OSTI)

    Sanderson, Allen R.

    2012-10-01

    This report summarizes the results of the award for “Visualization and Analysis in Support of Fusion Science.” With this award our main efforts have been to develop and deploy visualization and analysis tools in three areas 1) magnetic field line analysis 2) query based visualization and 3) comparative visualization.

  11. System and method for floating-substrate passive voltage contrast

    DOE Patents [OSTI]

    Jenkins, Mark W.; Cole, Jr., Edward I.; Tangyunyong, Paiboon; Soden, Jerry M.; Walraven, Jeremy A.; Pimentel, Alejandro A.

    2009-04-28

    A passive voltage contrast (PVC) system and method are disclosed for analyzing ICs to locate defects and failure mechanisms. During analysis a device side of a semiconductor die containing the IC is maintained in an electrically-floating condition without any ground electrical connection while a charged particle beam is scanned over the device side. Secondary particle emission from the device side of the IC is detected to form an image of device features, including electrical vias connected to transistor gates or to other structures in the IC. A difference in image contrast allows the defects or failure mechanisms be pinpointed. Varying the scan rate can, in some instances, produce an image reversal to facilitate precisely locating the defects or failure mechanisms in the IC. The system and method are useful for failure analysis of ICs formed on substrates (e.g. bulk semiconductor substrates and SOI substrates) and other types of structures.

  12. Technical Sessions Measurements of Surface Heat Flux Over Contrasting Surfaces

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Measurements of Surface Heat Flux Over Contrasting Surfaces R. L. Coulter J. D. Shannon T. J. Martin Argonne National Laboratory Argonne, IL 60439 In a multilaboratory field study held near Boardman in northeastern Oregon in June 1991 and described in greater detail elsewhere (Doran et al. 1991), various properties of the surface and lower atmospheric boundary layer over heavily irrigated cropland and adjacent desert steppe were investigated. The locale was selected because its disparate

  13. A Visualization Tool for Meteorological Data

    Energy Science and Technology Software Center (OSTI)

    1999-09-28

    Graphical user interfaces (GUIs) have been buit to visualize surface and upper-meteorology data for any global location and time of interest. The user selects a domain (geographic location and bounding range) and time of interest using the Gui, and a file containing coded observations is accessed and decoded. two styles of the GUI have been built, depending on whether surface or upper air visualization is desired. The former indicates weather conditions near the earth''s surface,more » while the latter illustrates a vertical profile of atmospheric conditions.« less

  14. Framework for an Information Visualization System

    Energy Science and Technology Software Center (OSTI)

    2006-08-11

    The Program is a suite of Windows-based software applications and services for ingesting, storing, and analyzing large quantities of disparate inforamtion. The software supports the ingestion and storage of any information that can be represented in eXtensible Markup Language (XML) format. Stored information can be subsequently retrieved via search operations, then "visualized" in multiple ways using a client application that supports a variety of analytical functions. Visualization capabilities include tools for depicting a variety ofmore » relationships that may be present in the information, including geospatial, temporal, topical, categorical, and network relationships.« less

  15. Navigating nuclear science: Enhancing analysis through visualization

    SciTech Connect (OSTI)

    Irwin, N.H.; Berkel, J. van; Johnson, D.K.; Wylie, B.N.

    1997-09-01

    Data visualization is an emerging technology with high potential for addressing the information overload problem. This project extends the data visualization work of the Navigating Science project by coupling it with more traditional information retrieval methods. A citation-derived landscape was augmented with documents using a text-based similarity measure to show viability of extension into datasets where citation lists do not exist. Landscapes, showing hills where clusters of similar documents occur, can be navigated, manipulated and queried in this environment. The capabilities of this tool provide users with an intuitive explore-by-navigation method not currently available in today`s retrieval systems.

  16. Visual Matrix Clustering of Social Networks

    SciTech Connect (OSTI)

    Wong, Pak C.; Mackey, Patrick S.; Foote, Harlan P.; May, Richard A.

    2013-07-01

    The prevailing choices to graphically represent a social network in todays literature are a node-link graph layout and an adjacency matrix. Both visualization techniques have unique strengths and weaknesses when applied to different domain applications. In this article, we focus our discussion on adjacency matrix and how to turn the matrix-based visualization technique from merely showing pairwise associations among network actors (or graph nodes) to depicting clusters of a social network. We also use node-link layouts to supplement the discussion.

  17. 3D Imaging of Microbial Biofilms: Integration of Synchrotron Imaging and an Interactive Visualization Interface

    SciTech Connect (OSTI)

    Thomas, Mathew; Marshall, Matthew J.; Miller, Erin A.; Kuprat, Andrew P.; Kleese van Dam, Kerstin; Carson, James P.

    2014-08-26

    Understanding the interactions of structured communities known as “biofilms” and other complex matrixes is possible through the X-ray micro tomography imaging of the biofilms. Feature detection and image processing for this type of data focuses on efficiently identifying and segmenting biofilms and bacteria in the datasets. The datasets are very large and often require manual interventions due to low contrast between objects and high noise levels. Thus new software is required for the effectual interpretation and analysis of the data. This work specifies the evolution and application of the ability to analyze and visualize high resolution X-ray micro tomography datasets.

  18. Phase contrast and operation regimes in multifrequency atomic force microscopy

    SciTech Connect (OSTI)

    Santos, Sergio

    2014-04-07

    In amplitude modulation atomic force microscopy the attractive and the repulsive force regimes induce phase shifts above and below 90°, respectively. In the more recent multifrequency approach, however, multiple operation regimes have been reported and the theory should be revisited. Here, a theory of phase contrast in multifrequency atomic force microscopy is developed and discussed in terms of energy transfer between modes, energy dissipation and the kinetic energy and energy transfer associated with externally driven harmonics. The single frequency virial that controls the phase shift might undergo transitions in sign while the average force (modal virial) remains positive (negative)

  19. Fourier-transform and global contrast interferometer alignment methods

    DOE Patents [OSTI]

    Goldberg, Kenneth A.

    2001-01-01

    Interferometric methods are presented to facilitate alignment of image-plane components within an interferometer and for the magnified viewing of interferometer masks in situ. Fourier-transforms are performed on intensity patterns that are detected with the interferometer and are used to calculate pseudo-images of the electric field in the image plane of the test optic where the critical alignment of various components is being performed. Fine alignment is aided by the introduction and optimization of a global contrast parameter that is easily calculated from the Fourier-transform.

  20. Monitoring external beam radiotherapy using real-time beam visualization

    SciTech Connect (OSTI)

    Jenkins, Cesare H.; Naczynski, Dominik J.; Yu, Shu-Jung S.; Xing, Lei

    2015-01-15

    Purpose: To characterize the performance of a novel radiation therapy monitoring technique that utilizes a flexible scintillating film, common optical detectors, and image processing algorithms for real-time beam visualization (RT-BV). Methods: Scintillating films were formed by mixing Gd{sub 2}O{sub 2}S:Tb (GOS) with silicone and casting the mixture at room temperature. The films were placed in the path of therapeutic beams generated by medical linear accelerators (LINAC). The emitted light was subsequently captured using a CMOS digital camera. Image processing algorithms were used to extract the intensity, shape, and location of the radiation field at various beam energies, dose rates, and collimator locations. The measurement results were compared with known collimator settings to validate the performance of the imaging system. Results: The RT-BV system achieved a sufficient contrast-to-noise ratio to enable real-time monitoring of the LINAC beam at 20 fps with normal ambient lighting in the LINAC room. The RT-BV system successfully identified collimator movements with sub-millimeter resolution. Conclusions: The RT-BV system is capable of localizing radiation therapy beams with sub-millimeter precision and tracking beam movement at video-rate exposure.

  1. SciDAC Institute for Ultra-Scale Visualization: Activity Recognition for Ultra-Scale Visualization

    SciTech Connect (OSTI)

    Silver, Deborah

    2014-04-30

    Understanding the science behind ultra-scale simulations requires extracting meaning from data sets of hundreds of terabytes or more. Developing scalable parallel visualization algorithms is a key step enabling scientists to interact and visualize their data at this scale. However, at extreme scales, the datasets are so huge, there is not even enough time to view the data, let alone explore it with basic visualization methods. Automated tools are necessary for knowledge discovery -- to help sift through the information and isolate characteristic patterns, thereby enabling the scientist to study local interactions, the origin of features and their evolution in large volumes of data. These tools must be able to operate on data of this scale and work with the visualization process. In this project, we developed a framework for activity detection to allow scientists to model and extract spatio-temporal patterns from time-varying data.

  2. Visualization and Analysis of 3D Gene Expression Data (Technical...

    Office of Scientific and Technical Information (OSTI)

    Technical Report: Visualization and Analysis of 3D Gene Expression Data Citation Details In-Document Search Title: Visualization and Analysis of 3D Gene Expression Data You are...

  3. Visualizing OpenEI Data | OpenEI Community

    Open Energy Info (EERE)

    front page? There are several online tools that make organizing and visualizing data free and easy. OpenEI uses Google to visualize data in scatterplots, bar charts, and in the...

  4. File:DIA Visual Development.pdf | Open Energy Information

    Open Energy Info (EERE)

    DIA Visual Development.pdf Jump to: navigation, search File File history File usage File:DIA Visual Development.pdf Size of this preview: 800 600 pixels. Go to page 1 2 3 4 5 6...

  5. 3D Visualization of Water Transport in Ferns

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    3D Visualization of Water Transport in Ferns 3D Visualization of Water Transport in Ferns Print Monday, 08 April 2013 00:00 Plants transport water through elongated cells called...

  6. Contrast enhancing solution for use in confocal microscopy

    DOE Patents [OSTI]

    Tannous, Zeina; Torres, Abel; Gonzalez, Salvador

    2006-10-31

    A method of optically detecting a tumor during surgery. The method includes imaging at least one test point defined on the tumor using a first optical imaging system to provide a first tumor image. The method further includes excising a first predetermined layer of the tumor for forming an in-vivo defect area. A predetermined contrast enhancing solution is disposed on the in-vivo defect area, which is adapted to interact with at least one cell anomaly, such as basal cell carcinoma, located on the in-vivo defect area for optically enhancing the cell anomaly. Thereafter the defect area can be optically imaged to provide a clear and bright representation of the cell anomaly to aid a surgeon while surgically removing the cell anomaly.

  7. Visualization Gallery from the Computational Research Division at Lawrence

    Office of Scientific and Technical Information (OSTI)

    Berkeley National Laboratory () | Data Explorer Visualization Gallery from the Computational Research Division at Lawrence Berkeley National Laboratory Title: Visualization Gallery from the Computational Research Division at Lawrence Berkeley National Laboratory This excellent collection of visualization vignettes highlights research work done by the LBNL/NERSC Visualization Group and its collaborators from 1993 to the present. Images lead to technical explanations and project details,

  8. Structural Monitoring System (SMS) and Visual System (VS) | Department of

    Energy Savers [EERE]

    Energy Structural Monitoring System (SMS) and Visual System (VS) Structural Monitoring System (SMS) and Visual System (VS) Axis Communications, Inc. has developed network ready, environmentally tolerant, low-light level camera-visual systems (VS) with built-in pan and tilt mechanisms that permit remote monitoring of facilities that are in standby mode. PDF icon Structural Monitoring System (SMS) and Visual System (VS) More Documents & Publications GammaCam Technology Demonstration at

  9. Visualization of United States Renewable Consumption | Open Energy...

    Open Energy Info (EERE)

    Visualization of United States Renewable Consumption AgencyCompany Organization: Energy Information Administration Sector: Energy Resource Type: Softwaremodeling tools User...

  10. Algorithms, Frameworks and Toolsets for High Performance, Remoteand Distributed Visualization

    SciTech Connect (OSTI)

    Bethel, E. Wes; Shalf, John M.

    2005-07-01

    This document is a two-page summary of research accomplishments in the LBNL Visualization program during FY2005.

  11. 7 Key Challenges for Visualization in Cyber Network Defense

    SciTech Connect (OSTI)

    Best, Daniel M.; Endert, Alexander; Kidwell, Dan

    2014-12-02

    In this paper we present seven challenges, informed by two user studies, to be considered when developing a visualization for cyber security purposes. Cyber security visualizations must go beyond isolated solutions and pretty picture visualizations in order to make impact to users. We provide an example prototype that addresses the challenges with a description of how they are met. Our aim is to assist in increasing utility and adoption rates for visualization capabilities in cyber security.

  12. Visualization of Multivariate Data --- Inventor: Eliot Feibush | Princeton

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Berkeley National Laboratory () | Data Explorer Visualization Gallery from the Computational Research Division at Lawrence Berkeley National Laboratory Title: Visualization Gallery from the Computational Research Division at Lawrence Berkeley National Laboratory This excellent collection of visualization vignettes highlights research work done by the LBNL/NERSC Visualization Group and its collaborators from 1993 to the present. Images lead to technical explanations and project details,

  13. Topological Cacti: Visualizing Contour-based Statistics

    SciTech Connect (OSTI)

    Weber, Gunther H.; Bremer, Peer-Timo; Pascucci, Valerio

    2011-05-26

    Contours, the connected components of level sets, play an important role in understanding the global structure of a scalar field. In particular their nestingbehavior and topology-often represented in form of a contour tree-have been used extensively for visualization and analysis. However, traditional contour trees onlyencode structural properties like number of contours or the nesting of contours, but little quantitative information such as volume or other statistics. Here we use thesegmentation implied by a contour tree to compute a large number of per-contour (interval) based statistics of both the function defining the contour tree as well asother co-located functions. We introduce a new visual metaphor for contour trees, called topological cacti, that extends the traditional toporrery display of acontour tree to display additional quantitative information as width of the cactus trunk and length of its spikes. We apply the new technique to scalar fields ofvarying dimension and different measures to demonstrate the effectiveness of the approach.

  14. Geographic Visualization of Power-Grid Dynamics

    SciTech Connect (OSTI)

    Sukumar, Sreenivas R.

    2015-06-18

    The visualization enables the simulation analyst to see changes in the frequency through time and space. With this technology, the analyst has a bird's eye view of the frequency at loads and generators as the simulated power system responds to the loss of a generator, spikes in load, and other contingencies. The significance of a contingency to the operation of an electrical power system depends critically on how the resulting tansients evolve in time and space. Consequently, these dynamic events can only be understood when seen in their proper geographic context. this understanding is indispensable to engineers working on the next generation of distributed sensing and control systems for the smart grid. By making possible a natural and intuitive presentation of dynamic behavior, our new visualization technology is a situational-awareness tool for power-system engineers.

  15. Geographic Visualization of Power-Grid Dynamics

    Energy Science and Technology Software Center (OSTI)

    2015-06-18

    The visualization enables the simulation analyst to see changes in the frequency through time and space. With this technology, the analyst has a bird's eye view of the frequency at loads and generators as the simulated power system responds to the loss of a generator, spikes in load, and other contingencies. The significance of a contingency to the operation of an electrical power system depends critically on how the resulting tansients evolve in time andmore » space. Consequently, these dynamic events can only be understood when seen in their proper geographic context. this understanding is indispensable to engineers working on the next generation of distributed sensing and control systems for the smart grid. By making possible a natural and intuitive presentation of dynamic behavior, our new visualization technology is a situational-awareness tool for power-system engineers.« less

  16. APPLYING SIMPLE TECHNOLOGY ACCOMPLISHES VISUAL INSPECTION CHALLENGES

    SciTech Connect (OSTI)

    Robinson, C

    2007-07-21

    This paper discusses the successful implementation of simple video technologies at the Savannah River Site (SRS) to perform complex visual inspection, monitoring, and surveillance tasks. Because SRS facilities are similar to those of an industrial plant, the environmental and accessibility considerations for remote viewing are the primary determining factors in the selection of technology. The constraints and challenges associated with remote viewing are discussed, and examples of applications are given.

  17. Introduction to Reading and Visualizing ARM Data

    SciTech Connect (OSTI)

    Mather, James

    2014-02-18

    Atmospheric Radiation Measurement (ARM) Program standard data format is NetCDF 3 (Network Common Data Form). The object of this tutorial is to provide a basic introduction to NetCDF with an emphasis on aspects of the ARM application of NetCDF. The goal is to provide basic instructions for reading and visualizing ARM NetCDF data with the expectation that these examples can then be applied to more complex applications.

  18. Ultrascale visualization capabilities for the ParaView/VTK framework

    Energy Science and Technology Software Center (OSTI)

    2009-06-09

    The software is a set of technologies developed by the SciDAC Institute for Ultrascale Visualization in order to address the visualization needs for petascale computing and beyond. These technologies include improved I/O performance, simulation co-processing, advanced rendering capabilities, and specialized visualization techniques developed for SciDAC applications.

  19. Multidimensional structured data visualization method and apparatus, text visualization method and apparatus, method and apparatus for visualizing and graphically navigating the world wide web, method and apparatus for visualizing hierarchies

    DOE Patents [OSTI]

    Risch, John S.; Dowson, Scott T.

    2012-03-06

    A method of displaying correlations among information objects includes receiving a query against a database; obtaining a query result set; and generating a visualization representing the components of the result set, the visualization including one of a plane and line to represent a data field, nodes representing data values, and links showing correlations among fields and values. Other visualization methods and apparatus are disclosed.

  20. Multidimensional structured data visualization method and apparatus, text visualization method and apparatus, method and apparatus for visualizing and graphically navigating the world wide web, method and apparatus for visualizing hierarchies

    DOE Patents [OSTI]

    Risch, John S.; Dowson, Scott T.; Hart, Michelle L.; Hatley, Wes L.

    2008-05-13

    A method of displaying correlations among information objects comprises receiving a query against a database; obtaining a query result set; and generating a visualization representing the components of the result set, the visualization including one of a plane and line to represent a data field, nodes representing data values, and links showing correlations among fields and values. Other visualization methods and apparatus are disclosed.

  1. Radial velocities of southern visual multiple stars

    SciTech Connect (OSTI)

    Tokovinin, Andrei; Pribulla, Theodor; Fischer, Debra E-mail: pribulla@ta3.sk

    2015-01-01

    High-resolution spectra of visual multiple stars were taken in 20082009 to detect or confirm spectroscopic subsystems and to determine their orbits. Radial velocities of 93 late-type stars belonging to visual multiple systems were measured by numerical cross-correlation. We provide the individual velocities, the width, and the amplitude of the Gaussians that approximate the correlations. The new information on the multiple systems resulting from these data is discussed. We discovered double-lined binaries in HD 41742B, HD 56593C, and HD 122613AB, confirmed several other known subsystems, and constrained the existence of subsystems in some visual binaries where both components turned out to have similar velocities. The orbits of double-lined subsystems with periods of 148 and 13 days are computed for HD 104471 Aa,Ab and HD 210349 Aa,Ab, respectively. We estimate individual magnitudes and masses of the components in these triple systems and update the outer orbit of HD 104471 AB.

  2. Multivariate volume visualization through dynamic projections

    SciTech Connect (OSTI)

    Liu, Shusen; Wang, Bei; Thiagarajan, Jayaraman J.; Bremer, Peer -Timo; Pascucci, Valerio

    2014-11-01

    We propose a multivariate volume visualization framework that tightly couples dynamic projections with a high-dimensional transfer function design for interactive volume visualization. We assume that the complex, high-dimensional data in the attribute space can be well-represented through a collection of low-dimensional linear subspaces, and embed the data points in a variety of 2D views created as projections onto these subspaces. Through dynamic projections, we present animated transitions between different views to help the user navigate and explore the attribute space for effective transfer function design. Our framework not only provides a more intuitive understanding of the attribute space but also allows the design of the transfer function under multiple dynamic views, which is more flexible than being restricted to a single static view of the data. For large volumetric datasets, we maintain interactivity during the transfer function design via intelligent sampling and scalable clustering. As a result, using examples in combustion and climate simulations, we demonstrate how our framework can be used to visualize interesting structures in the volumetric space.

  3. Dependency visualization for complex system understanding

    SciTech Connect (OSTI)

    Smart, J.A.C.

    1994-09-01

    With the volume of software in production use dramatically increasing, the importance of software maintenance has become strikingly apparent. Techniques now sought and developed for reverse engineering and design extraction and recovery. At present, numerous commercial products and research tools exist which are capable of visualizing a variety of programming languages and software constructs. The list of new tools and services continues to grow rapidly. Although the scope of the existing commercial and academic product set is quite broad, these tools still share a common underlying problem. The ability of each tool to visually organize object representations is increasingly impaired as the number of components and component dependencies within systems increases. Regardless of how objects are defined, complex ``spaghetti`` networks result in nearly all large system cases. While this problem is immediately apparent in modem systems analysis involving large software implementations, it is not new. As will be discussed in Chapter 2, related problems involving the theory of graphs were identified long ago. This important theoretical foundation provides a useful vehicle for representing and analyzing complex system structures. While the utility of directed graph based concepts in software tool design has been demonstrated in literature, these tools still lack the capabilities necessary for large system comprehension. This foundation must therefore be expanded with new orgnizational and visualization constructs necessary to meet this challenge. This dissertation addresses this need by constructing a conceptual model and a set of methods for interactively exploring, organizing, and understanding the structure of complex software systems.

  4. Visualization Dot Com (Journal Article) | SciTech Connect

    Office of Scientific and Technical Information (OSTI)

    Visualization Dot Com Citation Details In-Document Search Title: Visualization Dot Com In this article, we explore the seemingly well-worn subject of distance-based, or remote visualization. Current practices in remote visualization tend to clump into two broad categories. One approach, which we'll call render-remote, is to render an image remotely, then transmit the data to the user. Another option, render-local, transfers raw data to the user, where it is then visualized and rendered on the

  5. Visual probes and methods for placing visual probes into subsurface areas

    DOE Patents [OSTI]

    Clark, Don T.; Erickson, Eugene E.; Casper, William L.; Everett, David M.

    2004-11-23

    Visual probes and methods for placing visual probes into subsurface areas in either contaminated or non-contaminated sites are described. In one implementation, the method includes driving at least a portion of a visual probe into the ground using direct push, sonic drilling, or a combination of direct push and sonic drilling. Such is accomplished without providing an open pathway for contaminants or fugitive gases to reach the surface. According to one implementation, the invention includes an entry segment configured for insertion into the ground or through difficult materials (e.g., concrete, steel, asphalt, metals, or items associated with waste), at least one extension segment configured to selectively couple with the entry segment, at least one push rod, and a pressure cap. Additional implementations are contemplated.

  6. Contrasting Behavior of GaP(001) and InP(001) at the Interface...

    Office of Scientific and Technical Information (OSTI)

    Contrasting Behavior of GaP(001) and InP(001) at the Interface with Water Citation Details In-Document Search Title: Contrasting Behavior of GaP(001) and InP(001) at the Interface ...

  7. Visual examinations of K east fuel elements

    SciTech Connect (OSTI)

    Pitner, A.L., Fluor Daniel Hanford

    1997-02-03

    Selected fuel elements stored in both ``good fuel`` and ``bad fuel`` canisters in K East Basin were extracted and visually examined full length for damage. Lower end damage in the ``bad fuel`` canisters was found to be more severe than expected based on top end appearances. Lower end damage for the ``good fuel`` canisters, however, was less than expected based on top end observations. Since about half of the fuel in K East Basin is contained in ``good fuel`` canisters based on top end assessments, the fraction of fuel projected to be intact with respect to IPS processing considerations remains at 50% based on these examination results.

  8. Visualization of information with an established order

    DOE Patents [OSTI]

    Wong, Pak Chung; Foote, Harlan P.; Thomas, James J.; Wong, Kwong-Kwok

    2007-02-13

    Among the embodiments of the present invention is a system including one or more processors operable to access data representative of a biopolymer sequence of monomer units. The one or more processors are further operable to establish a pattern corresponding to at least one fractal curve and generate one or more output signals corresponding to a number of image elements each representative of one of the monomer units. Also included is a display device responsive to the one or more output signals to visualize the biopolymer sequence by displaying the image elements in accordance with the pattern.

  9. Hydraulic flow visualization method and apparatus

    DOE Patents [OSTI]

    Karidis, P.G.

    1984-01-01

    An apparatus and method for visualizing liquid flow. Pulses of gas bubbles are introduced into a liquid flow stream and a strobe light is operated at a frequency related to the frequency of the gas pulses to shine on the bubbles as they pass through the liquid stream. The gas pulses pass through a probe body having a valve element, and a reciprocating valve stem passes through the probe body to operate the valve element. A stem actuating device comprises a slidable reciprocating member, operated by a crank arm. The actuated member is adjustable to adjust the amount of the valve opening during each pulse.

  10. Visualizing Brain Metals in Health and Disease

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualizing Brain Metals in Health and Disease figure 1 Fig. 1. Rapid-scanning x-ray fluorescence mapping ex perimental setup. Synchrotron x-rays at 11 keV passed through a 50 µm aperture (Ap). The beam intensity was monitored with a N2-filled ion chamber (I0). The brain slice was mounted vertically on a motorized stage (St) at 45° to the incident x-ray beam and raster scanned in the beam. A 13-element Ge detector (Ge) was positioned at a 90° angle to the beam. We all require iron, copper and

  11. Sequential pattern data mining and visualization

    DOE Patents [OSTI]

    Wong, Pak Chung (Richland, WA); Jurrus, Elizabeth R. (Kennewick, WA); Cowley, Wendy E. (Benton City, WA); Foote, Harlan P. (Richland, WA); Thomas, James J. (Richland, WA)

    2011-12-06

    One or more processors (22) are operated to extract a number of different event identifiers therefrom. These processors (22) are further operable to determine a number a display locations each representative of one of the different identifiers and a corresponding time. The display locations are grouped into sets each corresponding to a different one of several event sequences (330a, 330b, 330c. 330d, 330e). An output is generated corresponding to a visualization (320) of the event sequences (330a, 330b, 330c, 330d, 330e).

  12. Sequential pattern data mining and visualization

    DOE Patents [OSTI]

    Wong, Pak Chung (Richland, WA); Jurrus, Elizabeth R. (Kennewick, WA); Cowley, Wendy E. (Benton City, WA); Foote, Harlan P. (Richland, WA); Thomas, James J. (Richland, WA)

    2009-05-26

    One or more processors (22) are operated to extract a number of different event identifiers therefrom. These processors (22) are further operable to determine a number a display locations each representative of one of the different identifiers and a corresponding time. The display locations are grouped into sets each corresponding to a different one of several event sequences (330a, 330b, 330c. 330d, 330e). An output is generated corresponding to a visualization (320) of the event sequences (330a, 330b, 330c, 330d, 330e).

  13. SU-D-12A-02: DeTECT, a Method to Enhance Soft Tissue Contrast From Mega Voltage CT

    SciTech Connect (OSTI)

    Sheng, K; Gou, S; Qi, S

    2014-06-01

    Purpose: MVCT images have been used on TomoTherapy system to align patients based on bony anatomies but its usefulness for soft tissue registration, delineation and adaptive radiation therapy is severely limited due to minimal photoelectric interaction and prominent presence of noise resulting from low detector quantum efficiency of megavoltage x-rays. We aim to utilize a non-local means denoising method and texture analysis to recover the soft tissue information for MVCT. Methods: A block matching 3D (BM3D) algorithm was adapted to reduce the noise while keeping the texture information of the MVCT images. BM3D is an imaging denoising algorithm developed from non-local means methods. BM3D additionally creates 3D groups by stacking 2D patches by the order of similarity. 3D denoising operation is then performed. The resultant 3D group is inversely transformed back to 2D images. In this study, BM3D was applied to MVCT images of a CT quality phantom, a head and neck and a prostate patient. Following denoising, imaging texture was enhanced to create the denoised and texture enhanced CT (DeTECT). Results: The original MVCT images show prevalent noise and poor soft tissue contrast. By applying BM3D denoising and texture enhancement, all MVCT images show remarkable improvements. For the phantom, the contrast to noise ratio for the low contrast plug was improved from 2.2 to 13.1 without compromising line pair conspicuity. For the head and neck patient, the lymph nodes and vein in the carotid space inconspicuous in the original MVCT image becomes highly visible in DeTECT. For the prostate patient, the boundary between the bladder and the prostate in the original MVCT is successfully recovered. Both results are visually validated by kVCT images of the corresponding patients. Conclusion: DeTECT showed the promise to drastically improve the soft tissue contrast of MVCT for image guided radiotherapy and adaptive radiotherapy.

  14. From Question Answering to Visual Exploration

    SciTech Connect (OSTI)

    McColgin, Dave W.; Gregory, Michelle L.; Hetzler, Elizabeth G.; Turner, Alan E.

    2006-08-11

    Research in Question Answering has focused on the quality of information retrieval or extraction using the metrics of precision and recall to judge success; these metrics drive toward finding the specific best answer(s) and are best supportive of a lookup type of search. These do not address the opportunity that users? natural language questions present for exploratory interactions. In this paper, we present an integrated Question Answering environment that combines a visual analytics tool for unstructured text and a state-of-the-art query expansion tool designed to compliment the cognitive processes associated with an information analysts work flow. Analysts are seldom looking for factoid answers to simple questions; their information needs are much more complex in that they may be interested in patterns of answers over time, conflicting information, and even related non-answer data may be critical to learning about a problem or reaching prudent conclusions. In our visual analytics tool, questions result in a comprehensive answer space that allows users to explore the variety within the answers and spot related information in the rest of the data. The exploratory nature of the dialog between the user and this system requires tailored evaluation methods that better address the evolving user goals and counter cognitive biases inherent to exploratory search tasks.

  15. Visual Analytics for Power Grid Contingency Analysis

    SciTech Connect (OSTI)

    Wong, Pak C.; Huang, Zhenyu; Chen, Yousu; Mackey, Patrick S.; Jin, Shuangshuang

    2014-01-20

    Contingency analysis is the process of employing different measures to model scenarios, analyze them, and then derive the best response to remove the threats. This application paper focuses on a class of contingency analysis problems found in the power grid management system. A power grid is a geographically distributed interconnected transmission network that transmits and delivers electricity from generators to end users. The power grid contingency analysis problem is increasingly important because of both the growing size of the underlying raw data that need to be analyzed and the urgency to deliver working solutions in an aggressive timeframe. Failure to do so may bring significant financial, economic, and security impacts to all parties involved and the society at large. The paper presents a scalable visual analytics pipeline that transforms about 100 million contingency scenarios to a manageable size and form for grid operators to examine different scenarios and come up with preventive or mitigation strategies to address the problems in a predictive and timely manner. Great attention is given to the computational scalability, information scalability, visual scalability, and display scalability issues surrounding the data analytics pipeline. Most of the large-scale computation requirements of our work are conducted on a Cray XMT multi-threaded parallel computer. The paper demonstrates a number of examples using western North American power grid models and data.

  16. Web-based Visual Analytics for Extreme Scale Climate Science

    SciTech Connect (OSTI)

    Steed, Chad A; Evans, Katherine J; Harney, John F; Jewell, Brian C; Shipman, Galen M; Smith, Brian E; Thornton, Peter E; Williams, Dean N.

    2014-01-01

    In this paper, we introduce a Web-based visual analytics framework for democratizing advanced visualization and analysis capabilities pertinent to large-scale earth system simulations. We address significant limitations of present climate data analysis tools such as tightly coupled dependencies, ineffi- cient data movements, complex user interfaces, and static visualizations. Our Web-based visual analytics framework removes critical barriers to the widespread accessibility and adoption of advanced scientific techniques. Using distributed connections to back-end diagnostics, we minimize data movements and leverage HPC platforms. We also mitigate system dependency issues by employing a RESTful interface. Our framework embraces the visual analytics paradigm via new visual navigation techniques for hierarchical parameter spaces, multi-scale representations, and interactive spatio-temporal data mining methods that retain details. Although generalizable to other science domains, the current work focuses on improving exploratory analysis of large-scale Community Land Model (CLM) and Community Atmosphere Model (CAM) simulations.

  17. Performance Modeling for 3D Visualization in a Heterogeneous Computing

    Office of Scientific and Technical Information (OSTI)

    Environment (Technical Report) | SciTech Connect Performance Modeling for 3D Visualization in a Heterogeneous Computing Environment Citation Details In-Document Search Title: Performance Modeling for 3D Visualization in a Heterogeneous Computing Environment The visualization of large, remotely located data sets necessitates the development of a distributed computing pipeline in order to reduce the data, in stages, to a manageable size. The required baseline infrastructure for launching such

  18. Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture Series)

    Office of Scientific and Technical Information (OSTI)

    (Conference) | SciTech Connect Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture Series) Citation Details In-Document Search Title: Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture Series) The final Carbon Smackdown match took place Aug. 9, 2010. Juan Meza of the Computational Research Division revealed how scientists use computer visualizations to accelerate climate research and discuss the development of next-generation clean energy technologies such as wind

  19. Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture Series)

    Office of Scientific and Technical Information (OSTI)

    (Conference) | SciTech Connect Conference: Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture Series) Citation Details In-Document Search Title: Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture Series) The final Carbon Smackdown match took place Aug. 9, 2010. Juan Meza of the Computational Research Division revealed how scientists use computer visualizations to accelerate climate research and discuss the development of next-generation clean energy technologies

  20. Visualization of Force Fields in Protein Structure Prediction (Conference)

    Office of Scientific and Technical Information (OSTI)

    | SciTech Connect are not mathematically defined in such a way that their mathematical representation would facilitate the straightforward application of volume visualization techniques. To visualize energy, it is necessary to define a spatial mapping for these fields. Equipped with such a mapping, we can generate volume renderings of the internal energy states in a molecule.We describe our force field, the spatial mapping that we used for energy,and the visualizations that we produced from

  1. EGR Cooler Fouling - Visualization of Deposition and Removal...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    EGR Cooler Fouling - Visualization of Deposition and Removal Mechanis Presents experimental data on exhaust gas recirculation(EGR) cooler fouling using new test apparatus that...

  2. Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture...

    Office of Scientific and Technical Information (OSTI)

    use computer visualizations to accelerate climate research and discuss the development of next-generation clean energy technologies such as wind turbines and solar cells. ...

  3. NREL: Energy Analysis - Data Analysis and Visualization Staff

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    our energy efficiency and renewable energy data warehouse; advanced visualization; and ... Primary research interests Solar resource assessment Conversion of raw geographic ...

  4. Visualization of United States Energy Consumption | Open Energy...

    Open Energy Info (EERE)

    Energy Consumption Jump to: navigation, search Tool Summary LAUNCH TOOL Name: Visualization of United States Energy Consumption AgencyCompany Organization: Energy Information...

  5. Gamification and Visualization of Sensor Data Analysis in Research...

    Office of Scientific and Technical Information (OSTI)

    Title: Gamification and Visualization of Sensor Data Analysis in Research Buildings The use of video game elements in non-gaming systems, or gamification , has potential value in ...

  6. Sunfall: a collaborative visual analytics system for astrophysics...

    Office of Scientific and Technical Information (OSTI)

    visual analytics system developed for the Nearby Supernova Factory, an international astrophysics experiment and the largest data volume supernova search currently in operation. ...

  7. VISMASHUP: streamlining the creation of custom visualization applications

    SciTech Connect (OSTI)

    Ahrens, James P; Santos, Emanuele; Lins, Lauro; Freire, Juliana; Silva, Cl'audio T

    2010-01-01

    Visualization is essential for understanding the increasing volumes of digital data. However, the process required to create insightful visualizations is involved and time consuming. Although several visualization tools are available, including tools with sophisticated visual interfaces, they are out of reach for users who have little or no knowledge of visualization techniques and/or who do not have programming expertise. In this paper, we propose VISMASHUP, a new framework for streamlining the creation of customized visualization applications. Because these applications can be customized for very specific tasks, they can hide much of the complexity in a visualization specification and make it easier for users to explore visualizations by manipulating a small set of parameters. We describe the framework and how it supports the various tasks a designer needs to carry out to develop an application, from mining and exploring a set of visualization specifications (pipelines), to the creation of simplified views of the pipelines, and the automatic generation of the application and its interface. We also describe the implementation of the system and demonstrate its use in two real application scenarios.

  8. Visualization of Electric Power System Information: Workshop Proceedings

    SciTech Connect (OSTI)

    Kroposki, B.; Komomua, C.

    2013-01-01

    This report summarizes the workshop entitled: Visualization of Electric Power System Information. The workshop was held on September 11, 2012 on NREL's campus in Golden, Colorado.

  9. Capturing and Using Knowledge about the Use of Visualization Toolkits

    SciTech Connect (OSTI)

    Del Rio, Nicholas R.; Pinheiro da Silva, Paulo

    2012-11-02

    When constructing visualization pipelines using toolkits such as Visualization Toolkit (VTK) and Generic Mapping Tools (GMT), developers must understand (1) what toolkit operators will transform their data from its raw state to some required view state and (2) what viewers are available to present the generated view. Traditionally, developers learn about how to construct visualization pipelines by reading documentation and inspecting code examples, which can be costly in terms of the time and effort expended. Once an initial pipeline is constructed, developers may still have to undergo a trial and error process before a satisfactory visualization is generated. This paper presents the Visualization Knowledge Project (VisKo) that is built on a knowledge base of visualization toolkit operators and how they can be piped together to form visualization pipelines. Developers may now rely on VisKo to guide them when constructing visualization pipelines and in some cases, when VisKo has complete knowledge about some set of operators (i.e., sequencing and parameter settings), automatically generate a fully functional visualization pipeline.

  10. A Novel Visualization Technique for Electric Power Grid Analytics

    SciTech Connect (OSTI)

    Wong, Pak C.; Schneider, Kevin P.; Mackey, Patrick S.; Foote, Harlan P.; Chin, George; Guttromson, Ross T.; Thomas, James J.

    2009-05-01

    The application of information visualization holds tremendous promise for the electric power industry, and yet its potential has not been sufficiently exploited by the visualization community. Prior work on visualizing electric power systems has been limited to depicting raw or processed information on top of a geographic layout. Little effort has been devoted to maximize the analytical strengths naturally gained by the visualization itself. This paper introduces a visualization system prototype, known as GreenGrid, that explores the planning and monitoring of the North American Electricity Infrastructure. For the purposes of visualization, the power infrastructure can be described as a network of nodes and links. The nodes represent the electrical buses where generators and loads are connected, while the links represent the transmission lines that interconnect the buses. This paper focuses mainly on a customized technique within GreenGrid that is designed to visually identify abnormal characteristics of the electricity infrastructure. In particular, we examine an extreme event that occurred within the Western United States power grid on August 10, 1996. We compare our study results with the conclusion of the post-disturbance analysis and find that many of the disturbance characteristics can be readily identified with the proper form of visualization. The paper includes a lessons learned discussion to evaluate the visualization application.

  11. Visualization of World Energy Supply | Open Energy Information

    Open Energy Info (EERE)

    isualizationofWorldEnergySupply Cost: Free OpenEI Keyword(s): Community Generated Language: English References: OECD1 Motion chart visualization of the world energy supply...

  12. Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture...

    Office of Scientific and Technical Information (OSTI)

    The final Carbon Smackdown match took place Aug. 9, 2010. Juan Meza of the Computational Research Division revealed how scientists use computer visualizations to accelerate climate ...

  13. Ocean Thermal Extractable Energy Visualization: Final Technical Report

    Broader source: Energy.gov [DOE]

    Report about the Ocean Thermal Extractable Energy Visualization project, which focuses on assessing the Maximum Practicably Extractable Energy from the world’s ocean thermal resources.

  14. Visualizing the Behavior of Polar Domains and Screening Charges...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualizing the Behavior of Polar Domains and Screening Charges Under Electric and Mechanical Fields Event Sponsor: Mathematics and Computing Science - LANS Seminar Start Date: Sep...

  15. Sunfall: a collaborative visual analytics system for astrophysics...

    Office of Scientific and Technical Information (OSTI)

    The system combines novel image processing algorithms, statistical analysis, and machine learning with highly interactive visual interfaces to enable collaborative, user-driven ...

  16. Visualizing Assembling Everything (2010 JGI/ANL HPC Workshop)

    ScienceCinema (OSTI)

    Jaffe, David; Gnerre, Sante

    2011-06-08

    David Jaffe and Sante Gnerre of the Broad Institute give a presentation on "Visualizing assembling everything" at the JGI/Argonne HPC Workshop on January 25, 2010.

  17. Abengoa Solar Visual Inspection Tool | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Abengoa Solar Visual Inspection Tool Presented at the PV Module Reliability Workshop, ... Load: Preliminary Report Agenda for the PV Module Reliability Workshop, February 26 - ...

  18. Laser speckle contrast imaging of skin blood perfusion responses induced by

    Office of Scientific and Technical Information (OSTI)

    laser coagulation (Journal Article) | SciTech Connect Laser speckle contrast imaging of skin blood perfusion responses induced by laser coagulation Citation Details In-Document Search Title: Laser speckle contrast imaging of skin blood perfusion responses induced by laser coagulation We report application of laser speckle contrast imaging (LSCI), i.e., a fast imaging technique utilising backscattered light to distinguish such moving objects as red blood cells from such stationary objects as

  19. Spatio-temporal Visualization for Environmental Decision Support

    SciTech Connect (OSTI)

    Bhaduri, Budhendra L.; Shankar, Mallikarjun; Sorokine, Alexandre; Ganguly, Auroop R.

    2009-01-01

    Traditional visualization of earth surface features has been addressed through visual exploration, analysis, synthesis, and presentation of observable geospatial data. However, characterizing the changes in their observable and unobservable properties of geospatial features is critical for planning and policy formulation. Recent approaches are addressing modeling and visualization of the temporal dynamics that describe observed and/or predicted physical and socioeconomic processes using vast volumes of earth observation (imagery and other geophysical) data from remote sensor networks. This paper provides an overview of selected geospatial modeling and simulation, exploratory analysis of earth observation data, and high performance visualization research at Oak Ridge National Laboratory for developing novel data driven approaches for geospatial knowledge discovery and visualization relevant to environmental decision support.

  20. Hypervolume visualization: a challenge in simplicity

    SciTech Connect (OSTI)

    Bajaj, C.L.; Pascucci, V.; Rabbiolo, G.; Schikore, D.R.

    1998-09-22

    Hyper-volume visualization is designed to provide simple and fully explanatory images that give comprehensive insights into the global structure of scalar fields of any dimension. The basic idea is to have a dimension independent viewing system that scales nicely with the geometric dimension of the dataset and that can be combined with classical approaches like isocontouring and animation of slices of n.D data. We completely abandon (for core simplicity) rendering techniques, such as hidden surface removal or lighting or radiosity, that enhance three dimensional realism and concentrate on the real-time display of images that highlight structural (topological) features of the nD dataset (holes, tunnels, cavities, depressions, extrema, etc). Hyper-volume visualization on the one hand is a generalization of direct parallel projection methods in volume rendering. To achieve efficiency (and real-time performance on a graphics workstation) we combine the advantages of (i) a hierarchical representations of the hyper-volume data for multiresolution display and (ii) generalized object space splatting combined with texture-mapped graphics hardware acceleration. The development of a system that implements display techniques for multidimensional datasets requires careful design of both algorithms and user interfaces that scale linearly with the dimension n of the input geometric space. This is a major challenge since straightforward generalizations of standard techniques that are suitable for display of 3D data yield exceedingly intricate interfaces. For example, a view manipulation graphical user interface is usually based on a rotation of the object about Cartesian rotation axes, with possibly unit quaternions internal representations for the rotation group. Unfortunately the number of independent rotation axes grows quadratically with dimension(three in 3D to six in 4D to ten in 5D to fifteen in 6D space). Going back to the basics of parallel projections, we develop an alternative scheme that is very simple to implement and immediately gives a view manipulation graphical user interface that scales linearly with the dimension. One can still utilize matrix or quaternion or higher dimensional rotational group representations, internally for calculations.The main results of our paper are thus both a multi-resolution direct rendering algorithm and scalable graphical user interface that provides insightfull global views of scalar fields in any dimension, while maintaining the fundamental characteristics of ease of use, and quick exploratory u

  1. Theoretical crystallography with the Advanced Visualization System

    SciTech Connect (OSTI)

    Younkin, C.R.; Thornton, E.N.; Nicholas, J.B.; Jones, D.R.; Hess, A.C.

    1993-05-01

    Space is an Application Visualization System (AVS) graphics module designed for crystallographic and molecular research. The program can handle molecules, two-dimensional periodic systems, and three-dimensional periodic systems, all referred to in the paper as models. Using several methods, the user can select atoms, groups of atoms, or entire molecules. Selections can be moved, copied, deleted, and merged. An important feature of Space is the crystallography component. The program allows the user to generate the unit cell from the asymmetric unit, manipulate the unit cell, and replicate it in three dimensions. Space includes the Buerger reduction algorithm which determines the asymmetric unit and the space group of highest symmetry of an input unit cell. Space also allows the user to display planes in the lattice based on Miller indices, and to cleave the crystal to expose the surface. The user can display important precalculated volumetric data in Space, such as electron densities and electrostatic surfaces. With a variety of methods, Space can compute the electrostatic potential of any chemical system based on input point charges.

  2. Guided Text Search Using Adaptive Visual Analytics

    SciTech Connect (OSTI)

    Steed, Chad A; Symons, Christopher T; Senter, James K; DeNap, Frank A

    2012-10-01

    This research demonstrates the promise of augmenting interactive visualizations with semi- supervised machine learning techniques to improve the discovery of significant associations and insights in the search and analysis of textual information. More specifically, we have developed a system called Gryffin that hosts a unique collection of techniques that facilitate individualized investigative search pertaining to an ever-changing set of analytical questions over an indexed collection of open-source documents related to critical national infrastructure. The Gryffin client hosts dynamic displays of the search results via focus+context record listings, temporal timelines, term-frequency views, and multiple coordinate views. Furthermore, as the analyst interacts with the display, the interactions are recorded and used to label the search records. These labeled records are then used to drive semi-supervised machine learning algorithms that re-rank the unlabeled search records such that potentially relevant records are moved to the top of the record listing. Gryffin is described in the context of the daily tasks encountered at the US Department of Homeland Security s Fusion Center, with whom we are collaborating in its development. The resulting system is capable of addressing the analysts information overload that can be directly attributed to the deluge of information that must be addressed in the search and investigative analysis of textual information.

  3. Temporal-contrast measurements of a white-light-seeded noncollinear optical parametric amplifier

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Bromage, J.; Dorrer, C.; Zuegel, J. D.

    2015-09-01

    Ultra-intense optical parametric chirped-pulse systems require front ends with broad bandwidth and high temporal contrast. Temporal cross-correlation measurements of a white-light–seeded noncollinear optical parametric amplifier (NOPA) show that its prepulse contrast exceeds the 120 dB dynamic range of the broadband NOPA-based cross-correlator.

  4. Anisotropy Characterization of I-125 Seed with Attached Encapsulated Cobalt Chloride Complex Contrast Agent Markers for MRI-Based Prostate Brachytherapy

    SciTech Connect (OSTI)

    Frank, Steven J., E-mail: sjfrank@mdanderson.or [Department of Radiation Oncology, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States); Tailor, Ramesh C.; Kudchadker, Rajat J. [Department of Radiation Physics, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States); Martirosyan, Karen S. [Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX (United States); Stafford, R. Jason; Elliott, Andrew M. [Department of Imaging Physics, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States); Swanson, David A. [Department of Urology, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States); Sing, David; Choi, Jonathan [Department of Radiation Oncology, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States); Mourtada, Firas; Ibbott, Geoffrey S. [Department of Radiation Physics, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States)

    2011-07-01

    We have developed a novel MRI marker for prostate brachytherapy. The purpose of this study was to evaluate the changes in anisotropy when cobalt chloride complex contrast agent encapsulated contrast agent markers (C4-ECAM) were placed adjacent to an iodine-125 (I-125) titanium seed, and to verify that the C4-ECAMs were visible on magnetic resonance imaging (MRI) after radiation exposure. Two C4-ECAMs were verified to be MRI visible in a phantom before radiation exposure. The C4-ECAMs were then attached to each end of a 12.7-U (10-mCi) I-125 titanium seed in a polymer tube. Anisotropy was measured and analyzed with the seed alone and with attached C4-ECAMs by suspending thermoluminescent dosimeters in a water phantom in 2 circles surrounding the radioactive source with radius of 1 or 2 cm. A T1-weighted MRI evaluation of C4-ECAMs was then performed after exposure to the amount of radiation typically delivered during 1 month of prostate brachytherapy. Measured values of the anisotropy function F(r, {theta}) for the I-125 seed with and without the C4-ECAMs were mutually statistically indistinguishable (standard error of the mean <4.2%) and agreed well with published TG-43 values for the bare seed. As expected, the anisotropy function {phi}{sub an}(r) for the 2 datasets (with and without C4-ECAMs) derived from the measured F(r, {theta}) did not exhibit statistically measurable difference. Both datasets showed agreement with the published TG-43 {phi}{sub an}(r) for the bare seed. The C4-ECAMs were well visualized by MRI after 1 month of radiation exposure. There were no changes in anisotropy when the C4-ECAMs were placed next to an I-125 radioactive seed, and the C4-ECAMs were visualized after radiation exposure.

  5. Your Data Analysis & Visualization Needs Mira Performance Boot Camp

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    & Visualization Needs Mira Performance Boot Camp May 20, 2015 Joseph A. Insley Tukey- High Performance Visualization Cluster ¤ 96 AMD Dual Opteron 6128 Compute Nodes ¥ 16 total CPU cores per node ¥ 64 GB RAM ¥ 2 NVIDIA Tesla M2070 GPUs, 6 GB RAM each ¤ 6 terabytes of CPU RAM, 1.1 terabytes of GPU RAM ¤ Peak GPU Performance: Over 98 TeraFLOPS ¤ Cross-Mounted Filesystem with Mira 2 Cooley - Expected June production ¤ Analytics/Visualization cluster ¤ Peak

  6. Ultrafast X-ray Phase-Enhanced Microimaging for Visualizing Fuel...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Ultrafast X-ray Phase-Enhanced Microimaging for Visualizing Fuel Injection Process and Diesel Sprays Ultrafast X-ray Phase-Enhanced Microimaging for Visualizing Fuel Injection ...

  7. Eliot Feibush leads new Princeton consortium to visualize Big...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Eliot Feibush leads new Princeton consortium to visualize Big Data By John Greenwald April 22, 2015 Tweet Widget Google Plus One Share on Facebook Eliot Feibush (Photo by Elle ...

  8. Eliot Feibush leads new Princeton consortium to visualize Big...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Eliot Feibush leads new Princeton consortium to visualize Big Data By John Greenwald April 20, 2015 Tweet Widget Google Plus One Share on Facebook Eliot Feibush (Photo by Elle ...

  9. SciDAC Visualization and Analytics Center for Enabling Technologies

    SciTech Connect (OSTI)

    Joy, Kenneth I.

    2014-09-14

    This project focuses on leveraging scientific visualization and analytics software technology as an enabling technology for increasing scientific productivity and insight. Advances in computational technology have resulted in an "information big bang," which in turn has created a significant data understanding challenge. This challenge is widely acknowledged to be one of the primary bottlenecks in contemporary science. The vision for our Center is to respond directly to that challenge by adapting, extending, creating when necessary and deploying visualization and data understanding technologies for our science stakeholders. Using an organizational model as a Visualization and Analytics Center for Enabling Technologies (VACET), we are well positioned to be responsive to the needs of a diverse set of scientific stakeholders in a coordinated fashion using a range of visualization, mathematics, statistics, computer and computational science and data management technologies.

  10. VisPortal: Deploying grid-enabled visualization tools through...

    Office of Scientific and Technical Information (OSTI)

    tools through a web-portal interface Citation Details In-Document Search Title: VisPortal: Deploying grid-enabled visualization tools through a web-portal interface You ...

  11. VisPortal: Deploying grid-enabled visualization tools through...

    Office of Scientific and Technical Information (OSTI)

    tools through a web-portal interface Citation Details In-Document Search Title: VisPortal: Deploying grid-enabled visualization tools through a web-portal interface The ...

  12. The SDAV Software Frameworks for Visualization and Analysis on...

    Office of Scientific and Technical Information (OSTI)

    Conference: The SDAV Software Frameworks for Visualization and Analysis on Next-Generation Multi-Core and Many-Core Architectures Citation Details In-Document Search Title: The ...

  13. Topology-based Visualization and Analysis of High-dimensional...

    Office of Scientific and Technical Information (OSTI)

    Data and Time-varying Data at the Extreme Scale Citation Details In-Document Search Title: Topology-based Visualization and Analysis of High-dimensional Data and Time-varying ...

  14. Exploratory Nuclear Reactor Safety Analysis and Visualization via

    Office of Scientific and Technical Information (OSTI)

    Integrated Topological and Geometric Techniques (Technical Report) | SciTech Connect Technical Report: Exploratory Nuclear Reactor Safety Analysis and Visualization via Integrated Topological and Geometric Techniques Citation Details In-Document Search Title: Exploratory Nuclear Reactor Safety Analysis and Visualization via Integrated Topological and Geometric Techniques A recent trend in the nuclear power engineering field is the implementation of heavily computational and time consuming

  15. Gamification and Visualization of Sensor Data Analysis in Research

    Office of Scientific and Technical Information (OSTI)

    Buildings (Conference) | SciTech Connect Gamification and Visualization of Sensor Data Analysis in Research Buildings Citation Details In-Document Search Title: Gamification and Visualization of Sensor Data Analysis in Research Buildings The use of video game elements in non-gaming systems, or gamification , has potential value in transforming data analysis. Our study focused on creating a web-based videogame that models two physical test buildings, each of which contains hundreds of

  16. Quantification and Visualization of Variation in Anatomical Trees

    SciTech Connect (OSTI)

    Amenta, Nina; Datar, Manasi; Dirksen, Asger; de Bruihne, Marleen; Feragen, Aasa; Ge, Xiaoyin; Holst Pedersen, Jesper; Howard, Marylesa; Owen, Megan; Petersen, Jens; Shi, Jie; Xu, Qiuping

    2015-07-01

    This paper presents two approaches to quantifying and visualizing variation in datasets of trees. The first approach localizes subtrees in which significant population differences are found through hypothesis testing and sparse classifiers on subtree features. The second approach visualizes the global metric structure of datasets through low-distortion embedding into hyperbolic planes in the style of multidimensional scaling. A case study is made on a dataset of airway trees in relation to Chronic Obstructive Pulmonary Disease.

  17. Visualizing Group II Intron Catalysis through the Stages of Splicing

    Office of Scientific and Technical Information (OSTI)

    (Journal Article) | SciTech Connect SciTech Connect Search Results Journal Article: Visualizing Group II Intron Catalysis through the Stages of Splicing Citation Details In-Document Search Title: Visualizing Group II Intron Catalysis through the Stages of Splicing Authors: Marcia, Marco ; Pyle, Anna Marie [1] ; HHMI) [2] + Show Author Affiliations (Yale) ( Publication Date: 2013-01-10 OSTI Identifier: 1054354 Resource Type: Journal Article Resource Relation: Journal Name: Cell; Journal

  18. Ocean Thermal Extractable Energy Visualization: Final Technical Report

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Approved for public release; distribution is unlimited OCEAN THERMAL EXTRACTABLE ENERGY VISUALIZATION Award # DE-EE0002664 October 28, 2012 Final Technical Report Prepared by Lockheed Martin Mission Systems & Sensors (MS2) DE-EE0002664 Ocean Thermal Energy Resource Assessment Final Draft i 10/28/2012 Project Title: Ocean Thermal Extractable Energy Visualization Recipient: Lockheed Martin Corporation Award #: DE-0002664 Working Partners Project Lead: Matthew Ascari - Lockheed Martin

  19. John Papanikolas: Visualizing Charge Carrier Motion in Nanowires Using

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Femtosecond Pump-Probe Microscopy | Center for Energy Efficient Materials John Papanikolas: Visualizing Charge Carrier Motion in Nanowires Using Femtosecond Pump-Probe Microscopy Apr 17, 2014 | 4:00 PM - 5:00 PM John Papanikolas Professor of Chemistry & Deputy Director, EFRC on Solar Fuels University of North Carolina, Chapel Hill Visualizing Charge Carrier Motion in Nanowires Using Femtosecond Pump-Probe Microscopy April 17, 2014 | 4:00pm | ESB 1001 Faculty host: Dan Morse

  20. NREL: Distributed Grid Integration - Data Collection and Visualization

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Projects Data Collection and Visualization Projects NREL researchers work with utilities and other organizations, such as the Sacramento Municipal Utility District and the U.S. Army, to create data collection and visualization scenarios that help them to understand and effectively manage distributed energy integration systems. Sacramento Municipal Utility District As part of a larger project with the Sacramento Municipal Utility District (SMUD), NREL is using its data collection and

  1. NREL: Energy Systems Integration - Computational Science and Visualization

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Computational Science and Visualization Computational science and visualization capabilities at NREL propel technology innovation as a research tool by which scientists and engineers find new ways to tackle our nation's energy challenges-challenges that cannot be addressed through traditional experimentation alone. These efforts will save time and money, significantly improve the likelihood of breakthroughs and useful advances, and reduce risks and uncertainties that are often barriers to

  2. OVIS: Scalable Run Time Data Collection Analysis and Visualization

    Office of Scientific and Technical Information (OSTI)

    (Abstract). (Conference) | SciTech Connect OVIS: Scalable Run Time Data Collection Analysis and Visualization (Abstract). Citation Details In-Document Search Title: OVIS: Scalable Run Time Data Collection Analysis and Visualization (Abstract). Abstract not provided. Authors: Chen, Frank Xiaoxiao ; Das, Ananya Publication Date: 2009-07-01 OSTI Identifier: 1141424 Report Number(s): SAND2009-4761C 506638 DOE Contract Number: DE-AC04-94AL85000 Resource Type: Conference Resource Relation:

  3. Visual Information for the Desktop, version 1.0

    Energy Science and Technology Software Center (OSTI)

    2006-03-29

    VZIN integrates visual analytics capabilities into popular desktop tools to aid a user in searching and understanding an information space. VZIN allows users to Drag-Drop-Visualize-Explore-Organize information within tools such as Microsoft Office, Windows Explorer, Excel, and Outlook. VZIN is tailorable to specific client or industry requirements. VZIN follows the desktop metaphors so that advanced analytical capabilities are available with minimal user training.

  4. Scalable Run Time Data Collection Analysis and Visualization

    Office of Scientific and Technical Information (OSTI)

    (Presentation). (Conference) | SciTech Connect Scalable Run Time Data Collection Analysis and Visualization (Presentation). Citation Details In-Document Search Title: Scalable Run Time Data Collection Analysis and Visualization (Presentation). Abstract not provided. Authors: Gentile, Ann C. ; Chen, Frank Xiaoxiao [1] ; Das, Ananya + Show Author Affiliations Sandia National Laboratories, Livermore, CA [Sandia National Laboratories, Livermore, CA Publication Date: 2009-07-01 OSTI Identifier:

  5. VERDE: Visualizing Energy Resources Dynamically on Earth - Energy

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Innovation Portal Energy Analysis Energy Analysis Electricity Transmission Electricity Transmission Find More Like This Return to Search VERDE: Visualizing Energy Resources Dynamically on Earth Oak Ridge National Laboratory Contact ORNL About This Technology Technology Marketing SummaryVERDE is a software application utilizing the Google Earth(c) platform to provide real time visualization of the electric power grid.DescriptionVERDE is capable of layering different types of information on

  6. Visapult: A Prototype Remote and Distributed Visualization Application and

    Office of Scientific and Technical Information (OSTI)

    Framework (Conference) | SciTech Connect Conference: Visapult: A Prototype Remote and Distributed Visualization Application and Framework Citation Details In-Document Search Title: Visapult: A Prototype Remote and Distributed Visualization Application and Framework We describe an approach used for implementing a highly efficient and scalable method for direct volume rendering. Our approach uses a pipelined-parallel decomposition composed of parallel computers and commodity desktop hardware.

  7. Visualization of Force Fields in Protein Structure Prediction (Conference)

    Office of Scientific and Technical Information (OSTI)

    | SciTech Connect arenot mathematically defined in such a way that their mathematicalrepresentation would facilitate the straightforward application of volumevisualization techniques. To visualize energy, it is necessary to definea spatial mapping for these fields. Equipped with such a mapping, we cangenerate volume renderings of the internal energy states in a molecule.We describe our force field, the spatial mapping that we used for energy,and the visualizations that we produced from this

  8. Appendix TFIELD Attachment A: Attachment A: TFIELD-2014 Visualization

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Attachment A: TFIELD-2014 Visualization United States Department of Energy Waste Isolation Pilot Plant Carlsbad Field Office Carlsbad, New Mexico Compliance Recertification Application 2014 Attachment A: TFIELD-2014 Visualization This attachment contains figures for Appendix TFIELD-2014, related to the Culebra T-Field calibration process, performed as part of the 2009 Compliance Recertification Application (CRA-2009) Performance Assessment Baseline Calculation (PABC). These parameter inputs and

  9. Real-time automatic fiducial marker tracking in low contrast cine-MV images

    Office of Scientific and Technical Information (OSTI)

    (Journal Article) | SciTech Connect Real-time automatic fiducial marker tracking in low contrast cine-MV images Citation Details In-Document Search Title: Real-time automatic fiducial marker tracking in low contrast cine-MV images Purpose: To develop a real-time automatic method for tracking implanted radiographic markers in low-contrast cine-MV patient images used in image-guided radiation therapy (IGRT). Methods: Intrafraction motion tracking using radiotherapy beam-line MV images have

  10. Large Data Visualization on Distributed Memory Mulit-GPU Clusters

    SciTech Connect (OSTI)

    Childs, Henry R.

    2010-03-01

    Data sets of immense size are regularly generated on large scale computing resources. Even among more traditional methods for acquisition of volume data, such as MRI and CT scanners, data which is too large to be effectively visualization on standard workstations is now commonplace. One solution to this problem is to employ a 'visualization cluster,' a small to medium scale cluster dedicated to performing visualization and analysis of massive data sets generated on larger scale supercomputers. These clusters are designed to fit a different need than traditional supercomputers, and therefore their design mandates different hardware choices, such as increased memory, and more recently, graphics processing units (GPUs). While there has been much previous work on distributed memory visualization as well as GPU visualization, there is a relative dearth of algorithms which effectively use GPUs at a large scale in a distributed memory environment. In this work, we study a common visualization technique in a GPU-accelerated, distributed memory setting, and present performance characteristics when scaling to extremely large data sets.

  11. The Ultra-scale Visualization Climate Data Analysis Tools (UV-CDAT): Data Analysis and Visualization for Geoscience Data

    SciTech Connect (OSTI)

    Williams, Dean; Doutriaux, Charles; Patchett, John; Williams, Sean; Shipman, Galen; Miller, Ross; Steed, Chad; Krishnan, Harinarayan; Silva, Claudio; Chaudhary, Aashish; Bremer, Peer-Timo; Pugmire, David; Bethel, E. Wes; Childs, Hank; Prabhat, Mr.; Geveci, Berk; Bauer, Andrew; Pletzer, Alexander; Poco, Jorge; Ellqvist, Tommy; Santos, Emanuele; Potter, Gerald; Smith, Brian; Maxwell, Thomas; Kindig, David; Koop, David

    2013-05-01

    To support interactive visualization and analysis of complex, large-scale climate data sets, UV-CDAT integrates a powerful set of scientific computing libraries and applications to foster more efficient knowledge discovery. Connected through a provenance framework, the UV-CDAT components can be loosely coupled for fast integration or tightly coupled for greater functionality and communication with other components. This framework addresses many challenges in the interactive visual analysis of distributed large-scale data for the climate community.

  12. Contrasting Behavior of GaP(001) and InP(001) at the Interface...

    Office of Scientific and Technical Information (OSTI)

    at the Interface with Water Citation Details In-Document Search Title: Contrasting Behavior of GaP(001) and InP(001) at the Interface with Water Authors: Wood, B C ; ...

  13. QUIET-SUN INTENSITY CONTRASTS IN THE NEAR-ULTRAVIOLET AS MEASURED FROM SUNRISE

    SciTech Connect (OSTI)

    Hirzberger, J.; Feller, A.; Riethmueller, T. L.; Schuessler, M.; Borrero, J. M.; Gandorfer, A.; Solanki, S. K.; Barthol, P.; Afram, N.; Unruh, Y. C.; Berdyugina, S. V.; Berkefeld, T.; Schmidt, W.; Bonet, J. A.; MartInez Pillet, V.; Knoelker, M.; Title, A. M.

    2010-11-10

    We present high-resolution images of the Sun in the near-ultraviolet spectral range between 214 nm and 397 nm as obtained from the first science flight of the 1 m SUNRISE balloon-borne solar telescope. The quiet-Sun rms intensity contrasts found in this wavelength range are among the highest values ever obtained for quiet-Sun solar surface structures-up to 32.8% at a wavelength of 214 nm. We compare the rms contrasts obtained from the observational data with theoretical intensity contrasts obtained from numerical magnetohydrodynamic simulations. For 388 nm and 312 nm the observations agree well with the numerical simulations whereas at shorter wavelengths discrepancies between observed and simulated contrasts remain.

  14. Hydrogen atom donor compounds as contrast enhancers for black-and-white photothermographic and thermographic elements

    DOE Patents [OSTI]

    Harring, Lori S. (Hudson, WI); Simpson, Sharon M. (Lake Elmo, MN); Sansbury, Francis H. (Sawbridgeworth, GB2)

    1997-01-01

    Hydrogen atom donor compounds are useful as contrast enhancers when used in combination with (i) hindered phenol developers, and (ii) trityl hydrazide and/or formyl-phenyl hydrazine co-developers, to produce ultra-high contrast black-and-white photothermographic and thermographic elements. The photothermographic and thermographic elements may be used as a photomask in a process where there is a subsequent exposure of an ultraviolet or short wavelength visible radiation-sensitive imageable medium.

  15. A report documenting the completion of the Los Alamos National Laboratory portion of the ASC level II milestone ""Visualization on the supercomputing platform

    SciTech Connect (OSTI)

    Ahrens, James P; Patchett, John M; Lo, Li - Ta; Mitchell, Christopher; Mr Marle, David; Brownlee, Carson

    2011-01-24

    This report provides documentation for the completion of the Los Alamos portion of the ASC Level II 'Visualization on the Supercomputing Platform' milestone. This ASC Level II milestone is a joint milestone between Sandia National Laboratory and Los Alamos National Laboratory. The milestone text is shown in Figure 1 with the Los Alamos portions highlighted in boldfaced text. Visualization and analysis of petascale data is limited by several factors which must be addressed as ACES delivers the Cielo platform. Two primary difficulties are: (1) Performance of interactive rendering, which is the most computationally intensive portion of the visualization process. For terascale platforms, commodity clusters with graphics processors (GPUs) have been used for interactive rendering. For petascale platforms, visualization and rendering may be able to run efficiently on the supercomputer platform itself. (2) I/O bandwidth, which limits how much information can be written to disk. If we simply analyze the sparse information that is saved to disk we miss the opportunity to analyze the rich information produced every timestep by the simulation. For the first issue, we are pursuing in-situ analysis, in which simulations are coupled directly with analysis libraries at runtime. This milestone will evaluate the visualization and rendering performance of current and next generation supercomputers in contrast to GPU-based visualization clusters, and evaluate the perfromance of common analysis libraries coupled with the simulation that analyze and write data to disk during a running simulation. This milestone will explore, evaluate and advance the maturity level of these technologies and their applicability to problems of interest to the ASC program. In conclusion, we improved CPU-based rendering performance by a a factor of 2-10 times on our tests. In addition, we evaluated CPU and CPU-based rendering performance. We encourage production visualization experts to consider using CPU-based rendering solutions when it is appropriate. For example, on remote supercomputers CPU-based rendering can offer a means of viewing data without having to offload the data or geometry onto a CPU-based visualization system. In terms of comparative performance of the CPU and CPU we believe that further optimizations of the performance of both CPU or CPU-based rendering are possible. The simulation community is currently confronting this reality as they work to port their simulations to different hardware architectures. What is interesting about CPU rendering of massive datasets is that for part two decades CPU performance has significantly outperformed CPU-based systems. Based on our advancements, evaluations and explorations we believe that CPU-based rendering has returned as one viable option for the visualization of massive datasets.

  16. Visualizations of coherent center domains in local Polyakov loops

    SciTech Connect (OSTI)

    Stokes, Finn M. Kamleh, Waseem; Leinweber, Derek B.

    2014-09-15

    Quantum Chromodynamics exhibits a hadronic confined phase at low to moderate temperatures and, at a critical temperature T{sub C}, undergoes a transition to a deconfined phase known as the quarkgluon plasma. The nature of this deconfinement phase transition is probed through visualizations of the Polyakov loop, a gauge independent order parameter. We produce visualizations that provide novel insights into the structure and evolution of center clusters. Using the HMC algorithm the percolation during the deconfinement transition is observed. Using 3D rendering of the phase and magnitude of the Polyakov loop, the fractal structure and correlations are examined. The evolution of the center clusters as the gauge fields thermalize from below the critical temperature to above it are also exposed. We observe deconfinement proceeding through a competition for the dominance of a particular center phase. We use stout-link smearing to remove small-scale noise in order to observe the large-scale evolution of the center clusters. A correlation between the magnitude of the Polyakov loop and the proximity of its phase to one of the center phases of SU(3) is evident in the visualizations. - Highlights: We produce visualizations of center clusters in Polyakov loops. The evolution of center clusters with HMC simulation time is examined. Visualizations provide novel insights into the percolation of center clusters. The magnitude and phase of the Polyakov loop are studied. A correlation between the magnitude and center phase proximity is evident.

  17. Visual Data Analysis as an Integral Part of Environmental Management

    SciTech Connect (OSTI)

    Meyer, Joerg; Bethel, E. Wes; Horsman, Jennifer L.; Hubbard, Susan S.; Krishnan, Harinarayan; Romosan,, Alexandru; Keating, Elizabeth H.; Monroe, Laura; Strelitz, Richard; Moore, Phil; Taylor, Glenn; Torkian, Ben; Johnson, Timothy C.; Gorton, Ian

    2012-10-01

    The U.S. Department of Energy's (DOE) Office of Environmental Management (DOE/EM) currently supports an effort to understand and predict the fate of nuclear contaminants and their transport in natural and engineered systems. Geologists, hydrologists, physicists and computer scientists are working together to create models of existing nuclear waste sites, to simulate their behavior and to extrapolate it into the future. We use visualization as an integral part in each step of this process. In the first step, visualization is used to verify model setup and to estimate critical parameters. High-performance computing simulations of contaminant transport produces massive amounts of data, which is then analyzed using visualization software specifically designed for parallel processing of large amounts of structured and unstructured data. Finally, simulation results are validated by comparing simulation results to measured current and historical field data. We describe in this article how visual analysis is used as an integral part of the decision-making process in the planning of ongoing and future treatment options for the contaminated nuclear waste sites. Lessons learned from visually analyzing our large-scale simulation runs will also have an impact on deciding on treatment measures for other contaminated sites.

  18. Beam collimation with polycapillary x-ray optics for high contrast high resolution monochromatic imaging

    SciTech Connect (OSTI)

    Sugiro, Francisca R.; Li Danhong; MacDonald, C.A.

    2004-12-01

    Monochromatic imaging can provide better contrast and resolution than conventional broadband radiography. In broadband systems, low energy photons do not contribute to the image, but are merely absorbed, while high energy photons produce scattering that degrades the image. By tuning to the optimal energy, one can eliminate undesirable lower and higher energies. Monochromatization is achieved by diffraction from a single crystal. A crystal oriented to diffract at a particular energy, in this case the characteristic line energy, diffracts only those photons within a narrow range of angles. The resultant beam from a divergent source is nearly parallel, but not very intense. To increase the intensity, collimation was performed with polycapillary x-ray optics, which can collect radiation from a divergent source and redirect it into a quasi parallel beam. Contrast and resolution measurements were performed with diffracting crystals with both high and low angular acceptance. Testing was first done at 8 keV with an intense copper rotating anode x-ray source, then 17.5 keV measurements were made with a low power molybdenum source. At 8 keV, subject contrast was a factor of five higher than for the polychromatic case. At 17.5 keV, monochromatic contrast was two times greater than the conventional polychromatic contrast. The subject contrasts measured at both energies were in good agreement with theory. An additional factor of two increase in contrast, for a total gain of four, is expected at 17.5 keV from the removal of scatter. Scatter might be simply removed using an air gap, which does not degrade resolution with a parallel beam.

  19. Deploying web-based visual exploration tools on the grid (Journal Article)

    Office of Scientific and Technical Information (OSTI)

    | SciTech Connect Journal Article: Deploying web-based visual exploration tools on the grid Citation Details In-Document Search Title: Deploying web-based visual exploration tools on the grid We discuss a web-based portal for the exploration, encapsulation, and dissemination of visualization results over the Grid. This portal integrates three components: an interface client for structured visualization exploration, a visualization web application to manage the generation and capture of the

  20. High Performance Multivariate Visual Data Exploration for Extremely Large Data

    SciTech Connect (OSTI)

    Rubel, Oliver; Wu, Kesheng; Childs, Hank; Meredith, Jeremy; Geddes, Cameron G.R.; Cormier-Michel, Estelle; Ahern, Sean; Weber, Gunther H.; Messmer, Peter; Hagen, Hans; Hamann, Bernd; Bethel, E. Wes; Prabhat,

    2008-08-22

    One of the central challenges in modern science is the need to quickly derive knowledge and understanding from large, complex collections of data. We present a new approach that deals with this challenge by combining and extending techniques from high performance visual data analysis and scientific data management. This approach is demonstrated within the context of gaining insight from complex, time-varying datasets produced by a laser wakefield accelerator simulation. Our approach leverages histogram-based parallel coordinates for both visual information display as well as a vehicle for guiding a data mining operation. Data extraction and subsetting are implemented with state-of-the-art index/query technology. This approach, while applied here to accelerator science, is generally applicable to a broad set of science applications, and is implemented in a production-quality visual data analysis infrastructure. We conduct a detailed performance analysis and demonstrate good scalability on a distributed memory Cray XT4 system.

  1. Phase-contrast Hounsfield units of fixated and non-fixated soft-tissue samples

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Willner, Marian; Fior, Gabriel; Marschner, Mathias; Birnbacher, Lorenz; Schock, Jonathan; Braun, Christian; Fingerle, Alexander A.; Noël, Peter B.; Rummeny, Ernst J.; Pfeiffer, Franz; et al

    2015-08-31

    X-ray phase-contrast imaging is a novel technology that achieves high soft-tissue contrast. Although its clinical impact is still under investigation, the technique may potentially improve clinical diagnostics. In conventional attenuation-based X-ray computed tomography, radiological diagnostics are quantified by Hounsfield units. Corresponding Hounsfield units for phase-contrast imaging have been recently introduced, enabling a setup-independent comparison and standardized interpretation of imaging results. Thus far, the experimental values of few tissue types have been reported; these values have been determined from fixated tissue samples. This study presents phase-contrast Hounsfield units for various types of non-fixated human soft tissues. A large variety of tissuemore » specimens ranging from adipose, muscle and connective tissues to liver, kidney and pancreas tissues were imaged by a grating interferometer with a rotating-anode X-ray tube and a photon-counting detector. In addition, we investigated the effects of formalin fixation on the quantitative phase-contrast imaging results.« less

  2. Phase-contrast Hounsfield units of fixated and non-fixated soft-tissue samples

    SciTech Connect (OSTI)

    Willner, Marian; Fior, Gabriel; Marschner, Mathias; Birnbacher, Lorenz; Schock, Jonathan; Braun, Christian; Fingerle, Alexander A.; Noël, Peter B.; Rummeny, Ernst J.; Pfeiffer, Franz; Herzen, Julia; Rozhkova, Elena A.

    2015-08-31

    X-ray phase-contrast imaging is a novel technology that achieves high soft-tissue contrast. Although its clinical impact is still under investigation, the technique may potentially improve clinical diagnostics. In conventional attenuation-based X-ray computed tomography, radiological diagnostics are quantified by Hounsfield units. Corresponding Hounsfield units for phase-contrast imaging have been recently introduced, enabling a setup-independent comparison and standardized interpretation of imaging results. Thus far, the experimental values of few tissue types have been reported; these values have been determined from fixated tissue samples. This study presents phase-contrast Hounsfield units for various types of non-fixated human soft tissues. A large variety of tissue specimens ranging from adipose, muscle and connective tissues to liver, kidney and pancreas tissues were imaged by a grating interferometer with a rotating-anode X-ray tube and a photon-counting detector. In addition, we investigated the effects of formalin fixation on the quantitative phase-contrast imaging results.

  3. High-Resolution Phase-Contrast Imaging of Submicron Particles in Unstained Lung Tissue

    SciTech Connect (OSTI)

    Schittny, J. C.; Barre, S. F.; Haberthuer, D.; Mokso, R.; Tsuda, A.; Stampanoni, M.

    2011-09-09

    To access the risks and chances of deposition of submicron particles in the gas-exchange area of the lung, a precise three-dimensional (3D)-localization of the sites of deposition is essential--especially because local peaks of deposition are expected in the acinar tree and in individual alveoli. In this study we developed the workflow for such an investigation. We administered 200-nm gold particles to young adult rats by intratracheal instillation. After fixation and paraffin embedding, their lungs were imaged unstained using synchrotron radiation x-ray tomographic microscopy (SRXTM) at the beamline TOMCAT (Swiss Light Source, Villigen, Switzerland) at sample detector distances of 2.5 mm (absorption contrast) and of 52.5 mm (phase contrast). A segmentation based on a global threshold of grey levels was successfully done on absorption-contrast images for the gold and on the phase-contrast images for the tissue. The smallest spots containing gold possessed a size of 1-2 voxels of 370-nm side length. We conclude that a combination of phase and absorption contrast SRXTM imaging is necessary to obtain the correct segmentation of both tissue and gold particles. This method will be used for the 3D localization of deposited particles in the gas-exchange area of the lung.

  4. Using ParaView for Scientific Data Visualization | Argonne National

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Laboratory Using ParaView for Scientific Data Visualization May 16, 2016 1:00PM to 2:00PM Presenter Joseph Insley (ALCF) Location Building 401, Room A1100 Type Seminar Series APS Scientific Computation Seminar Series Abstract: ParaView is an open-source, multiplatform data analysis and visualization application. ParaView was developed to analyze extremely large datasets using distributed memory computing resources. It can be run on supercomputers to analyze large datasets as well as on

  5. Interactive visualization of particle beams for accelerator design

    SciTech Connect (OSTI)

    Wilson, Brett; Ma, Kwan-Liu; Qiang, Ji; Ryne, Robert

    2002-01-15

    We describe a hybrid data-representation and rendering technique for visualizing large-scale particle data generated from numerical modeling of beam dynamics. The basis of the technique is mixing volume rendering and point rendering according to particle density distribution, visibility, and the user's instruction. A hierarchical representation of the data is created on a parallel computer, allowing real-time partitioning into high-density areas for volume rendering, and low-density areas for point rendering. This allows the beam to be interactively visualized while preserving the fine structure usually visible only with slow point based rendering techniques.

  6. The CommonGround Visual Paradigm for Biosurveillance

    SciTech Connect (OSTI)

    Livnat, Yarden; Jurrus, Elizabeth R.; Gundlapalli, Adi V.; Gestland, Per

    2013-06-14

    Biosurveillance is a critical area in the intelligence community for real-time detection of disease outbreaks. Identifying epidemics enables analysts to detect and monitor disease outbreaks that might be spread from natural causes or from possible biological warfare attacks. Containing these events and disseminating alerts requires the ability to rapidly find, classify and track harmful biological signatures. In this paper, we describe a novel visual paradigm to conduct biosurveillance using an Infectious Disease Weather Map. Our system provides a visual common ground in which users can view, explore and discover emerging concepts and correlations such as symptoms, syndromes, pathogens, and geographic locations.

  7. The SDAV Software Frameworks for Visualization and Analysis on

    Office of Scientific and Technical Information (OSTI)

    Next-Generation Multi-Core and Many-Core Architectures. (Conference) | SciTech Connect Conference: The SDAV Software Frameworks for Visualization and Analysis on Next-Generation Multi-Core and Many-Core Architectures. Citation Details In-Document Search Title: The SDAV Software Frameworks for Visualization and Analysis on Next-Generation Multi-Core and Many-Core Architectures. Authors: Moreland, Kenneth D. ; Sewell, Christopher ; Meredith, Jeremy ; Peterka, Tom ; DeMarle, David ; Lo, Li-Ta ;

  8. Nonlinear contrast enhancement in photoacoustic molecular imaging with gold nanosphere encapsulated nanoemulsions

    SciTech Connect (OSTI)

    Wei, Chen-wei; Lombardo, Michael; Larson-Smith, Kjersta; Perez, Camilo; Xia, Jinjun; Matula, Thomas; Pozzo, Danilo; O'Donnell, Matthew; Pelivanov, Ivan

    2014-01-20

    A composite contrast agent, a nanoemulsion bead with assembled gold nanospheres at the interface, is proposed to improve the specific contrast of photoacoustic molecular imaging. A phase transition in the bead's core is induced by absorption of a nanosecond laser pulse with a fairly low laser fluence (∼3.5 mJ/cm{sup 2}), creating a transient microbubble through dramatically enhanced thermal expansion. This generates nonlinear photoacoustic signals with more than 10 times larger amplitude compared to that of a linear agent with the same optical absorption. By applying a differential scheme similar to ultrasound pulse inversion, more than 40 dB contrast enhancement is demonstrated with suppression of background signals.

  9. OPCPA front end and contrast optimization for the OMEGA EP kilojoule, picosecond laser

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Dorrer, C.; Consentino, A.; Irwin, D.; Qiao, J.; Zuegel, J. D.

    2015-09-01

    OMEGA EP is a large-scale laser system that combines optical parametric amplification and solid-state laser amplification on two beamlines to deliver high-intensity, high-energy optical pulses. The temporal contrast of the output pulse is limited by the front-end parametric fluorescence and other features that are specific to parametric amplification. The impact of the two-crystal parametric preamplifier, pump-intensity noise, and pump-signal timing is experimentally studied. The implementation of a parametric amplifier pumped by a short pump pulse before stretching, further amplification, and recompression to enhance the temporal contrast of the high-energy short pulse is described.

  10. Practical method and device for enhancing pulse contrast ratio for lasers and electron accelerators

    DOE Patents [OSTI]

    Zhang, Shukui; Wilson, Guy

    2014-09-23

    An apparatus and method for enhancing pulse contrast ratios for drive lasers and electron accelerators. The invention comprises a mechanical dual-shutter system wherein the shutters are placed sequentially in series in a laser beam path. Each shutter of the dual shutter system has an individually operated trigger for opening and closing the shutter. As the triggers are operated individually, the delay between opening and closing first shutter and opening and closing the second shutter is variable providing for variable differential time windows and enhancement of pulse contrast ratio.

  11. Lighting Studies for Fuelling Machine Deployed Visual Inspection Tool

    SciTech Connect (OSTI)

    Stoots, Carl; Griffith, George

    2015-04-01

    Under subcontract to James Fisher Nuclear, Ltd., INL has been reviewing advanced vision systems for inspection of graphite in high radiation, high temperature, and high pressure environments. INL has performed calculations and proof-of-principle measurements of optics and lighting techniques to be considered for visual inspection of graphite fuel channels in AGR reactors in UK.

  12. Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture Series)

    ScienceCinema (OSTI)

    Meza, Juan [LBNL Computational Research Division

    2010-09-01

    The final Carbon Smackdown match took place Aug. 9, 2010. Juan Meza of the Computational Research Division revealed how scientists use computer visualizations to accelerate climate research and discuss the development of next-generation clean energy technologies such as wind turbines and solar cells.

  13. Human Factors Evaluation of Advanced Electric Power Grid Visualization Tools

    SciTech Connect (OSTI)

    Greitzer, Frank L.; Dauenhauer, Peter M.; Wierks, Tamara G.; Podmore, Robin

    2009-04-01

    This report describes initial human factors evaluation of four visualization tools (Graphical Contingency Analysis, Force Directed Graphs, Phasor State Estimator and Mode Meter/ Mode Shapes) developed by PNNL, and proposed test plans that may be implemented to evaluate their utility in scenario-based experiments.

  14. Fuel Cell Backup Power Geographical Visualization Map (Fact Sheet)

    SciTech Connect (OSTI)

    Not Available

    2012-12-01

    This NREL Hydrogen and Fuel Cell Technical Highlight describes a time-lapse geographical visualization map of early market use of fuel cells for telecommunications backup power. The map synthesizes data being analyzed by NREL's Technology Validation team for the U.S. Department of Energy (DOE) Fuel Cell Technologies Program with DOE's publicly available annual summaries of electric disturbance events.

  15. Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT): Semi-Annual Progress Report

    SciTech Connect (OSTI)

    Williams, D N

    2012-02-29

    This report summarizes work carried out by the Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) Team for the period of July 1, 2011 through December 31, 2011. It discusses highlights, overall progress, period goals, and collaborations and lists papers and presentations. The UV-CDAT team is positioned to address the following high-level visualization requirements: (1) Alternative parallel streaming statistics and analysis pipelines - Data parallelism, Task parallelism, Visualization parallelism; (2) Optimized parallel input/output (I/O); (3) Remote interactive execution; (4) Advanced intercomparison visualization; (5) Data provenance processing and capture; and (6) Interfaces for scientists - Workflow data analysis and visualization construction tools, Visualization interfaces.

  16. Temporal Stability of Visual Search-Driven Biometrics

    SciTech Connect (OSTI)

    Yoon, Hong-Jun; Carmichael, Tandy; Tourassi, Georgia

    2015-01-01

    Previously, we have shown the potential of using an individual s visual search pattern as a possible biometric. That study focused on viewing images displaying dot-patterns with different spatial relationships to determine which pattern can be more effective in establishing the identity of an individual. In this follow-up study we investigated the temporal stability of this biometric. We performed an experiment with 16 individuals asked to search for a predetermined feature of a random-dot pattern as we tracked their eye movements. Each participant completed four testing sessions consisting of two dot patterns repeated twice. One dot pattern displayed concentric circles shifted to the left or right side of the screen overlaid with visual noise, and participants were asked which side the circles were centered on. The second dot-pattern displayed a number of circles (between 0 and 4) scattered on the screen overlaid with visual noise, and participants were asked how many circles they could identify. Each session contained 5 untracked tutorial questions and 50 tracked test questions (200 total tracked questions per participant). To create each participant s "fingerprint", we constructed a Hidden Markov Model (HMM) from the gaze data representing the underlying visual search and cognitive process. The accuracy of the derived HMM models was evaluated using cross-validation for various time-dependent train-test conditions. Subject identification accuracy ranged from 17.6% to 41.8% for all conditions, which is significantly higher than random guessing (1/16 = 6.25%). The results suggest that visual search pattern is a promising, fairly stable personalized fingerprint of perceptual organization.

  17. Simultaneous topographic and elemental chemical and magnetic contrast in scanning tunneling microscopy

    DOE Patents [OSTI]

    Rose, Volker; Preissner, Curt A; Hla, Saw-Wai; Wang, Kangkang; Rosenmann, Daniel

    2014-09-30

    A method and system for performing simultaneous topographic and elemental chemical and magnetic contrast analysis in a scanning, tunneling microscope. The method and system also includes nanofabricated coaxial multilayer tips with a nanoscale conducting apex and a programmable in-situ nanomanipulator to fabricate these tips and also to rotate tips controllably.

  18. Benchmarking the x-ray phase contrast imaging for ICF DT ice characterization using roughened surrogates

    SciTech Connect (OSTI)

    Dewald, E; Kozioziemski, B; Moody, J; Koch, J; Mapoles, E; Montesanti, R; Youngblood, K; Letts, S; Nikroo, A; Sater, J; Atherton, J

    2008-06-26

    We use x-ray phase contrast imaging to characterize the inner surface roughness of DT ice layers in capsules planned for future ignition experiments. It is therefore important to quantify how well the x-ray data correlates with the actual ice roughness. We benchmarked the accuracy of our system using surrogates with fabricated roughness characterized with high precision standard techniques. Cylindrical artifacts with azimuthally uniform sinusoidal perturbations with 100 um period and 1 um amplitude demonstrated 0.02 um accuracy limited by the resolution of the imager and the source size of our phase contrast system. Spherical surrogates with random roughness close to that required for the DT ice for a successful ignition experiment were used to correlate the actual surface roughness to that obtained from the x-ray measurements. When comparing average power spectra of individual measurements, the accuracy mode number limits of the x-ray phase contrast system benchmarked against surface characterization performed by Atomic Force Microscopy are 60 and 90 for surrogates smoother and rougher than the required roughness for the ice. These agreement mode number limits are >100 when comparing matching individual measurements. We will discuss the implications for interpreting DT ice roughness data derived from phase-contrast x-ray imaging.

  19. Grating-based phase contrast tomosynthesis imaging: Proof-of-concept experimental studies

    SciTech Connect (OSTI)

    Li, Ke; Ge, Yongshuai; Garrett, John; Bevins, Nicholas; Zambelli, Joseph; Chen, Guang-Hong

    2014-01-15

    Purpose: This paper concerns the feasibility of x-ray differential phase contrast (DPC) tomosynthesis imaging using a grating-based DPC benchtop experimental system, which is equipped with a commercial digital flat-panel detector and a medical-grade rotating-anode x-ray tube. An extensive system characterization was performed to quantify its imaging performance. Methods: The major components of the benchtop system include a diagnostic x-ray tube with a 1.0 mm nominal focal spot size, a flat-panel detector with 96 ?m pixel pitch, a sample stage that rotates within a limited angular span of 30, and a Talbot-Lau interferometer with three x-ray gratings. A total of 21 projection views acquired with 3 increments were used to reconstruct three sets of tomosynthetic image volumes, including the conventional absorption contrast tomosynthesis image volume (AC-tomo) reconstructed using the filtered-backprojection (FBP) algorithm with the ramp kernel, the phase contrast tomosynthesis image volume (PC-tomo) reconstructed using FBP with a Hilbert kernel, and the differential phase contrast tomosynthesis image volume (DPC-tomo) reconstructed using the shift-and-add algorithm. Three inhouse physical phantoms containing tissue-surrogate materials were used to characterize the signal linearity, the signal difference-to-noise ratio (SDNR), the three-dimensional noise power spectrum (3D NPS), and the through-plane artifact spread function (ASF). Results: While DPC-tomo highlights edges and interfaces in the image object, PC-tomo removes the differential nature of the DPC projection data and its pixel values are linearly related to the decrement of the real part of the x-ray refractive index. The SDNR values of polyoxymethylene in water and polystyrene in oil are 1.5 and 1.0, respectively, in AC-tomo, and the values were improved to 3.0 and 2.0, respectively, in PC-tomo. PC-tomo and AC-tomo demonstrate equivalent ASF, but their noise characteristics quantified by the 3D NPS were found to be different due to the difference in the tomosynthesis image reconstruction algorithms. Conclusions: It is feasible to simultaneously generate x-ray differential phase contrast, phase contrast, and absorption contrast tomosynthesis images using a grating-based data acquisition setup. The method shows promise in improving the visibility of several low-density materials and therefore merits further investigation.

  20. Jefferson Lab Dec. 9 Science Lecture Discusses How Visual Illusions Trick

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    the Mind | Jefferson Lab Dec. 9 Science Lecture Discusses How Visual Illusions Trick the Mind Jefferson Lab Dec. 9 Science Lecture Discusses How Visual Illusions Trick the Mind NEWPORT NEWS, Va., Nov. 4, 2009 - Jefferson Lab will host an illuminating and educational presentation on Wednesday, Dec. 9, titled How the Mind Tricks Us: Visualizations and Visual Illusions with Dr. Eric Mazur, Harvard University. Mazur is the Balkanski Professor of Physics and Applied Physics at Harvard University.

  1. Computerized fluid movement mapping and 3-D visualization

    SciTech Connect (OSTI)

    Al-Awami, A.A.; Poore, J.W.; Sizer, J.P.

    1995-11-01

    Most of the fieldwide fluid movement monitoring techniques under utilize available computer resources. This paper discusses an approach reservoir management engineers use to monitor fluid movement in reservoirs with a multitude of wells. This approach allows the engineer to maintain up-to-date fluid movement studies and incorporate the latest information from data acquisition programs into the day to day decision-making process. The approach uses several in-house database applications and makes extensive use of commercially available software products to generate and visualize cross-sections, maps, and 3-d models. This paper reviews the computerized procedures to create cross-sections that display the current fluid contacts overlaying the lithology. It also reviews the mapping procedures nd presents examples of water encroachment maps by layer at specific time periods. 3-D geologic modeling software greatly enhances the visualization of the reservoir. This software can also be used to interpret and model fluid movement, given the appropriate engineering constraints.

  2. Big Data Visual Analytics for Exploratory Earth System Simulation Analysis

    SciTech Connect (OSTI)

    Steed, Chad A.; Ricciuto, Daniel M.; Shipman, Galen M.; Smith, Brian E.; Thornton, Peter E.; Wang, Dali; Shi, Xiaoying; Williams, Dean N.

    2013-12-01

    Rapid increases in high performance computing are feeding the development of larger and more complex data sets in climate research, which sets the stage for so-called big data analysis challenges. However, conventional climate analysis techniques are inadequate in dealing with the complexities of today s data. In this paper, we describe and demonstrate a visual analytics system, called the Exploratory Data analysis ENvironment (EDEN), with specific application to the analysis of complex earth system simulation data sets. EDEN represents the type of interactive visual analysis tools that are necessary to transform data into insight, thereby improving critical comprehension of earth system processes. In addition to providing an overview of EDEN, we describe real-world studies using both point ensembles and global Community Land Model Version 4 (CLM4) simulations.

  3. New techniques in 3D scalar and vector field visualization

    SciTech Connect (OSTI)

    Max, N.; Crawfis, R.; Becker, B.

    1993-05-05

    At Lawrence Livermore National Laboratory (LLNL) we have recently developed several techniques for volume visualization of scalar and vector fields, all of which use back-to-front compositing. The first renders volume density clouds by compositing polyhedral volume cells or their faces. The second is a ``splatting`` scheme which composites textures used to reconstruct the scalar or vector fields. One version calculates the necessary texture values in software, and another takes advantage of hardware texture mapping. The next technique renders contour surface polygons using semi-transparent textures, which adjust appropriately when the surfaces deform in a flow, or change topology. The final one renders the ``flow volume`` of smoke or dye tracer swept out by a fluid flowing through a small generating polygon. All of these techniques are applied to a climate model data set, to visualize cloud density and wind velocity.

  4. Visual Modeling for Aqua Ventus I off Monhegan Island, ME

    SciTech Connect (OSTI)

    Hanna, Luke A.; Whiting, Jonathan M.; Copping, Andrea E.

    2013-11-27

    To assist the University of Maine in demonstrating a clear pathway to project completion, PNNL has developed visualization models of the Aqua Ventus I project that accurately depict the Aqua Ventus I turbines from various points on Monhegain Island, ME and the surrounding area. With a hub height of 100 meters, the Aqua Ventus I turbines are large and may be seen from many areas on Monhegan Island, potentially disrupting important viewsheds. By developing these visualization models, which consist of actual photographs taken from Monhegan Island and the surrounding area with the Aqua Ventus I turbines superimposed within each photograph, PNNL intends to support the project’s siting and permitting process by providing the Monhegan Island community and various other stakeholders with a probable glimpse of how the Aqua Ventus I project will appear.

  5. Visually Relating Gene Expression and in vivo DNA Binding Data

    SciTech Connect (OSTI)

    Huang, Min-Yu; Mackey, Lester; Ker?; nen, Soile V. E.; Weber, Gunther H.; Jordan, Michael I.; Knowles, David W.; Biggin, Mark D.; Hamann, Bernd

    2011-09-20

    Gene expression and in vivo DNA binding data provide important information for understanding gene regulatory networks: in vivo DNA binding data indicate genomic regions where transcription factors are bound, and expression data show the output resulting from this binding. Thus, there must be functional relationships between these two types of data. While visualization and data analysis tools exist for each data type alone, there is a lack of tools that can easily explore the relationship between them. We propose an approach that uses the average expression driven by multiple of ciscontrol regions to visually relate gene expression and in vivo DNA binding data. We demonstrate the utility of this tool with examples from the network controlling early Drosophila development. The results obtained support the idea that the level of occupancy of a transcription factor on DNA strongly determines the degree to which the factor regulates a target gene, and in some cases also controls whether the regulation is positive or negative.

  6. A Visual Analytics Approach for Correlation, Classification, and Regression Analysis

    SciTech Connect (OSTI)

    Steed, Chad A; SwanII, J. Edward; Fitzpatrick, Patrick J.; Jankun-Kelly, T.J.

    2012-02-01

    New approaches that combine the strengths of humans and machines are necessary to equip analysts with the proper tools for exploring today's increasing complex, multivariate data sets. In this paper, a novel visual data mining framework, called the Multidimensional Data eXplorer (MDX), is described that addresses the challenges of today's data by combining automated statistical analytics with a highly interactive parallel coordinates based canvas. In addition to several intuitive interaction capabilities, this framework offers a rich set of graphical statistical indicators, interactive regression analysis, visual correlation mining, automated axis arrangements and filtering, and data classification techniques. The current work provides a detailed description of the system as well as a discussion of key design aspects and critical feedback from domain experts.

  7. High Contrast Ramsey Fringes with Coherent-Population-Trapping Pulses in a Double Lambda Atomic System

    SciTech Connect (OSTI)

    Zanon, T.; Guerandel, S.; Clercq, E. de; Holleville, D.; Dimarcq, N.; Clairon, A. [SYRTE, Observatoire de Paris, 61 Avenue de l'Observatoire, 75014 Paris (France)

    2005-05-20

    We report the observation of Raman-Ramsey fringes using a double lambda scheme creating coherent population trapping in an atomic ensemble combined with pulsed optical radiations. The observation was made in a Cs vapor mixed with N{sub 2} buffer gas in a closed cell. The double lambda scheme is created with lin perpendicular lin polarized laser beams leading to higher contrast than the usual simple lambda scheme. The pulsed trapping technique leads to narrow fringe widths scaling as 1/(2T) with high contrasts which are no longer limited by the saturation effect. This technique operates in a different way from the classical Ramsey sequence: the signal is done by applying a long trapping pulse to prepare the atomic state superposition, and fringe detection is accomplished by optical transmission during a short second trapping pulse without any perturbation of the dark state.

  8. Visualizing Wind Farm Wake Losses using SCADA Data

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Continuous Reliability Enhancement for Wind Visualizing Wind Farm Wake Losses using SCADA Data Sandia National Laboratories Carsten H. Westergaard, Jonathan White and Shawn Martin IEA Wind TEM#78 on Field Test Instrumentation and Merasurement Best Practices, October 7 and 8, 2014 Acknowledgement: This work has been funded under the Department of Energy's Continuous Reliability Enhancement for Wind (CREW) project. Sandia National Laboratories is a multi-program laboratory managed and operated by

  9. Eliot Feibush leads new Princeton consortium to visualize Big Data |

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Princeton Plasma Physics Lab Eliot Feibush leads new Princeton consortium to visualize Big Data By John Greenwald April 22, 2015 Tweet Widget Google Plus One Share on Facebook Eliot Feibush (Photo by Elle Starkman/PPPL Office of Communications) Eliot Feibush Gallery: Cross section of a tokamak plasma with red and blue colors showing direction and structure of plasma flow. (Photo by PPPL) Cross section of a tokamak plasma with red and blue colors showing direction and structure of plasma

  10. Texture splats for 3D vector and scalar field visualization

    SciTech Connect (OSTI)

    Crawfis, R.A.; Max, N.

    1993-04-06

    Volume Visualization is becoming an important tool for understanding large 3D datasets. A popular technique for volume rendering is known as splatting. With new hardware architectures offering substantial improvements in the performance of rendering texture mapped objects, we present textured splats. An ideal reconstruction function for 3D signals is developed which can be used as a texture map for a splat. Extensions to the basic splatting technique are then developed to additionally represent vector fields.

  11. Remote Visualization on Cooley Using VNC | Argonne Leadership Computing

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Facility Changes from Tukey to Cooley Compiling and Linking Using Cobalt on Cooley Visit on Cooley Paraview on Cooley ParaView Tutorial VNC on Cooley Policies Documentation Feedback Please provide feedback to help guide us as we continue to build documentation for our new computing resource. [Feedback Form] Remote Visualization on Cooley Using VNC When running graphics applications on Cooley, it is best to use the client/server mode, when available, where a lightweight client can run on

  12. Visualizing and improving the robustness of phase retrieval algorithms

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Tripathi, Ashish; Leyffer, Sven; Munson, Todd; Wild, Stefan M.

    2015-06-01

    Coherent x-ray diffractive imaging is a novel imaging technique that utilizes phase retrieval and nonlinear optimization methods to image matter at nanometer scales. We explore how the convergence properties of a popular phase retrieval algorithm, Fienup's HIO, behave by introducing a reduced dimensionality problem allowing us to visualize and quantify convergence to local minima and the globally optimal solution. We then introduce generalizations of HIO that improve upon the original algorithm's ability to converge to the globally optimal solution.

  13. UNIVERSITY OF CALIFORNIA The Future of Large Scale Visual Data

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    CALIFORNIA The Future of Large Scale Visual Data Analysis Joint Facilities User Forum on Data Intensive Computing Oakland, CA E. Wes Bethel Lawrence Berkeley National Laboratory 16 June 2014 16 June 2014 The World that Was: Computational Architectures * Machine architectures - Single CPU, single core - Vector, then single-core MPPs - "Large" SMP platforms - Relatively well balanced: memory, FLOPS,I/O 16 June 2014 The World that Was: Software Architecture * Data Analysis and

  14. Visualization of Force Fields in Protein Structure Prediction (Conference)

    Office of Scientific and Technical Information (OSTI)

    | SciTech Connect We describe our force field, the spatial mapping that we used for energy, and the visualizations that we produced from this mapping. We provide images and animations that offer insight into the computational behavior of the energy optimization algorithms that we employ. Authors: Crawford, Clark ; Kreylos, Oliver ; Hamann, Bernd ; Crivelli, Silvia Publication Date: 2005-04-26 OSTI Identifier: 882085 Report Number(s): LBNL--58169 R&D Project: 365963; TRN: US200613%%580

  15. IdentityMap Visualization of the Super Identity Model

    SciTech Connect (OSTI)

    2015-04-15

    The Super Identity Model is a collaboration with six United Kingdom universities to develop use cases used to piece together a person's identity across biological, cyber, psychological, and biographical domains. PNNL visualized the model in a web-based application called IdentityMap. This is the first step in a promising new field of research. Interested future collaborators are welcome to find out more by emailing superid@pnnl.gov.

  16. Scientific Visualization: The Modern Oscilloscope for "Seeing the Unseeable" (LBNL Summer Lecture Series)

    ScienceCinema (OSTI)

    Bethel, E Wes

    2011-04-28

    Summer Lecture Series 2008: Scientific visualization transforms abstract data into readily comprehensible images, provide a vehicle for "seeing the unseeable," and play a central role in both experimental and computational sciences. Wes Bethel, who heads the Scientific Visualization Group in the Computational Research Division, presents an overview of visualization and computer graphics, current research challenges, and future directions for the field.

  17. ASCI visualization tool evaluation, Version 2.0

    SciTech Connect (OSTI)

    Kegelmeyer, P.

    1997-04-01

    The charter of the ASCI Visualization Common Tools subgroup was to investigate and evaluate 3D scientific visualization tools. As part of that effort, a Tri-Lab evaluation effort was launched in February of 1996. The first step was to agree on a thoroughly documented list of 32 features against which all tool candidates would be evaluated. These evaluation criteria were both gleaned from a user survey and determined from informed extrapolation into the future, particularly as concerns the 3D nature and extremely large size of ASCI data sets. The second step was to winnow a field of 41 candidate tools down to 11. The selection principle was to be as inclusive as practical, retaining every tool that seemed to hold any promise of fulfilling all of ASCI`s visualization needs. These 11 tools were then closely investigated by volunteer evaluators distributed across LANL, LLNL, and SNL. This report contains the results of those evaluations, as well as a discussion of the evaluation philosophy and criteria.

  18. GWVis: A Tool for Comparative Ground-Water Data Visualization

    SciTech Connect (OSTI)

    Best, Daniel M.; Lewis, Robert R.

    2010-11-01

    The Ground-Water Visualization application (GWVis) presents ground-water data visually in order to educate the public on ground-water issues. It is also intended for presentations to government and other funding agencies. Current three dimensional models of ground-water are overly complex, while the two dimensional representations (i.e., on paper) are neither comprehensive, nor engaging. At present, GWVis operates on water head elevation data over a given time span, together with a matching (fixed) underlying geography. Two elevation scenarios are compared with each other, typically a control data set (actual field data) and a simulation. Scenario comparison can be animated for the time span provided. We developed GWVis using the Python programming language, associated libraries, and pyOpenGL extension packages to improve performance and control of attributes of the mode (such as color, positioning, scale, and interpolation). GWVis bridges the gap between two dimensional and dynamic three dimensional research visualizations by providing an intuitive, interactive design that allows participants to view the model from different perspectives and to infer information about scenarios. By incorporating scientific data in an environment that can be easily understood, GWVis allows the information to be presented to a large audience base.

  19. Histopathological Alterations after Single Epidural Injection of Ropivacaine, Methylprednizolone Acetate, or Contrast Material in Swine

    SciTech Connect (OSTI)

    Kitsou, Maria-Chrysanthi; Kostopanagiotou, Georgia; Kalimeris, Konstantinos; Vlachodimitropoulos, Demetrios; Soultanis, Konstantinos; Batistaki, Chrysanthi; Kelekis, Alexis

    2011-12-15

    Purpose: The consequences from the injection of different types of drugs in the epidural space remains unknown. Increasing evidence suggests that localized inflammation, fibrosis, and arachnoiditis can complicate sequential epidural blockades, or even epidural contrast injection. We investigate the in vivo effect of epidural injections in the epidural space in an animal model. Materials and Methods: A group of ten male adult pigs, five punctures to each at distinct vertebral interspaces under general anesthesia, were examined, testing different drugs, used regularly in the epidural space (iopamidol, methylprednisolone acetate, ropivacaine). Each site was marked with a percutaneous hook wire marker. Histological analysis of the epidural space, the meninges, and the underlying spinal cord of the punctured sites along with staining for caspase-3 followed 20 days later. Results: The epidural space did not manifest adhesions or any other pathology, and the outer surface of the dura was not impaired in any specimen. The group that had the contrast media injection showed a higher inflammation response compared to the other groups (P = 0.001). Positive staining for caspase-3 was limited to <5% of neurons with all substances used. Conclusion: No proof of arachnoiditis and/or fibrosis was noted in the epidural space with the use of the above-described drugs. A higher inflammation rate was noted with the use of contrast media.

  20. Imaging the Solar Cell P-N Junction and Depletion Region Using Secondary Electron Contrast

    SciTech Connect (OSTI)

    Heath, J. T.; Jiang, C. S.; Al-Jassim, M. M.

    2011-01-01

    We report on secondary electron (SE) images of cross-sectioned multicrystalline Si and GaAs/GaInP solar cell devices, focusing on quantifying the relationship between the apparent n{sup +}-p contrast and characteristic electronic features of the device. These samples allow us to compare the SE signal from devices which have very different physical characteristics: differing materials, diffused junction versus abrupt junction, heterojunction versus homojunction. Despite these differences, we find that the SE image contrast for both types of sample, and as a function of reverse bias across the diode, closely agrees with PC1D simulations of the bulk electrostatic potential in the device, accurately yielding the depletion edge and width. A spatial derivative of the SE data shows a local maximum at the metallurgical junction. Such data are valuable, for example, in studying the conformity of a diffused junction to the textured surface topography. These data also extend our understanding of the origin of the SE contrast.

  1. High energy x-ray phase contrast CT using glancing-angle grating interferometers

    SciTech Connect (OSTI)

    Sarapata, A.; Stayman, J. W.; Siewerdsen, J. H.; Finkenthal, M.; Stutman, D.; Pfeiffer, F.

    2014-02-15

    Purpose: The authors present initial progress toward a clinically compatible x-ray phase contrast CT system, using glancing-angle x-ray grating interferometry to provide high contrast soft tissue images at estimated by computer simulation dose levels comparable to conventional absorption based CT. Methods: DPC-CT scans of a joint phantom and of soft tissues were performed in order to answer several important questions from a clinical setup point of view. A comparison between high and low fringe visibility systems is presented. The standard phase stepping method was compared with sliding window interlaced scanning. Using estimated dose values obtained with a Monte-Carlo code the authors studied the dependence of the phase image contrast on exposure time and dose. Results: Using a glancing angle interferometer at high x-ray energy (∼45 keV mean value) in combination with a conventional x-ray tube the authors achieved fringe visibility values of nearly 50%, never reported before. High fringe visibility is shown to be an indispensable parameter for a potential clinical scanner. Sliding window interlaced scanning proved to have higher SNRs and CNRs in a region of interest and to also be a crucial part of a low dose CT system. DPC-CT images of a soft tissue phantom at exposures in the range typical for absorption based CT of musculoskeletal extremities were obtained. Assuming a human knee as the CT target, good soft tissue phase contrast could be obtained at an estimated absorbed dose level around 8 mGy, similar to conventional CT. Conclusions: DPC-CT with glancing-angle interferometers provides improved soft tissue contrast over absorption CT even at clinically compatible dose levels (estimated by a Monte-Carlo computer simulation). Further steps in image processing, data reconstruction, and spectral matching could make the technique fully clinically compatible. Nevertheless, due to its increased scan time and complexity the technique should be thought of not as replacing, but as complimentary to conventional CT, to be used in specific applications.

  2. SU-E-I-58: Detecting Tumors with Extremely Low Contrast in CT Images

    SciTech Connect (OSTI)

    Sheng, K; Gou, S; Kupelian, P; Steiberg, M; Low, D

    2014-06-01

    Purpose: Tumors such as the prostate focal lesions and the brain metastases have extremely low CT contrast and MRI is usually used for target delineation. The target contours are propagated to the CT for treatment planning and patient positioning. We have employed an advanced denoising method eliminating the noise and allow magnification of subtle contrast of these focal lesions on CT. Methods: Five prostate and two brain metastasis patients with MRI T2, diffusion or dynamic contrast enhanced (DCE) images confirmed focal lesions were included. One brain patients had 5 metastases. A block matching 3D (BM3D) algorithm was adapted to reduce the noise of kVCT images used for treatment planning. The gray-level range of the resultant images was narrowed to magnify the tumor-normal tissue contrast. Results: For the prostate patients, denoised kVCT images showed focal regions at 5, 8,11-1, 2, and 8–10 oclock for the 5 patients, this is highly consistent to the radiologist confirmed focal lesions based on MRI at 5, 7, 11-1, 2 and 8–10 oclock in the axial plane. These CT focal regions matched well with the MRI focal lesions in the cranio-caudal position. The average increase in density compared to background prostate glands was 0.86%, which corresponds to ∼50% increase in cellularity and is lower than the average CT noise level of 2.4%. For the brain patients, denoised kVCT showed 5/6 metastases. The high CT-density region of a metastasis is 2-mm off from its corresponding elevated MRI perfusion center. Overall the detecting sensitivity was 91%. Conclusion: It has been preliminarily demonstrated that the higher tumor cellularity can be detected using kVCT. The low contrast-to-noise information requires advanced denoising to reveal. The finding is significant to radiotherapy by providing an additional tool to locate focal lesions for confirming MRI-CT registration and providing a highly accessible outcome assessment tool.

  3. Visual Empirical Region of Influence (VERI) Pattern Recognition Algorithms

    SciTech Connect (OSTI)

    2002-05-01

    We developed new pattern recognition (PR) algorithms based on a human visual perception model. We named these algorithms Visual Empirical Region of Influence (VERI) algorithms. To compare the new algorithm's effectiveness against othe PR algorithms, we benchmarked their clustering capabilities with a standard set of two-dimensional data that is well known in the PR community. The VERI algorithm succeeded in clustering all the data correctly. No existing algorithm had previously clustered all the pattens in the data set successfully. The commands to execute VERI algorithms are quite difficult to master when executed from a DOS command line. The algorithm requires several parameters to operate correctly. From our own experiences we realized that if we wanted to provide a new data analysis tool to the PR community we would have to provide a new data analysis tool to the PR community we would have to make the tool powerful, yet easy and intuitive to use. That was our motivation for developing graphical user interfaces (GUI's) to the VERI algorithms. We developed GUI's to control the VERI algorithm in a single pass mode and in an optimization mode. We also developed a visualization technique that allows users to graphically animate and visually inspect multi-dimensional data after it has been classified by the VERI algorithms. The visualization technique that allows users to graphically animate and visually inspect multi-dimensional data after it has been classified by the VERI algorithms. The visualization package is integrated into the single pass interface. Both the single pass interface and optimization interface are part of the PR software package we have developed and make available to other users. The single pass mode only finds PR results for the sets of features in the data set that are manually requested by the user. The optimization model uses a brute force method of searching through the cominations of features in a data set for features that produce the best pattern recognition results. With a small number of features in a data set an exact solution can be determined. However, the number of possible combinations increases exponentially with the number of features and an alternate means of finding a solution must be found. We developed and implemented a technique for finding solutions in data sets with both small and large numbers of features. The VERI interface tools were written using the Tcl/Tk GUI programming language, version 8.1. Although the Tcl/Tk packages are designed to run on multiple computer platforms, we have concentrated our efforts to develop a user interface for the ubiquitous DOS environment. The VERI algorithms are compiled, executable programs. The interfaces run the VERI algorithms in Leave-One-Out mode using the Euclidean metric.

  4. Visual Empirical Region of Influence (VERI) Pattern Recognition Algorithms

    Energy Science and Technology Software Center (OSTI)

    2002-05-01

    We developed new pattern recognition (PR) algorithms based on a human visual perception model. We named these algorithms Visual Empirical Region of Influence (VERI) algorithms. To compare the new algorithm's effectiveness against othe PR algorithms, we benchmarked their clustering capabilities with a standard set of two-dimensional data that is well known in the PR community. The VERI algorithm succeeded in clustering all the data correctly. No existing algorithm had previously clustered all the pattens inmore » the data set successfully. The commands to execute VERI algorithms are quite difficult to master when executed from a DOS command line. The algorithm requires several parameters to operate correctly. From our own experiences we realized that if we wanted to provide a new data analysis tool to the PR community we would have to provide a new data analysis tool to the PR community we would have to make the tool powerful, yet easy and intuitive to use. That was our motivation for developing graphical user interfaces (GUI's) to the VERI algorithms. We developed GUI's to control the VERI algorithm in a single pass mode and in an optimization mode. We also developed a visualization technique that allows users to graphically animate and visually inspect multi-dimensional data after it has been classified by the VERI algorithms. The visualization technique that allows users to graphically animate and visually inspect multi-dimensional data after it has been classified by the VERI algorithms. The visualization package is integrated into the single pass interface. Both the single pass interface and optimization interface are part of the PR software package we have developed and make available to other users. The single pass mode only finds PR results for the sets of features in the data set that are manually requested by the user. The optimization model uses a brute force method of searching through the cominations of features in a data set for features that produce the best pattern recognition results. With a small number of features in a data set an exact solution can be determined. However, the number of possible combinations increases exponentially with the number of features and an alternate means of finding a solution must be found. We developed and implemented a technique for finding solutions in data sets with both small and large numbers of features. The VERI interface tools were written using the Tcl/Tk GUI programming language, version 8.1. Although the Tcl/Tk packages are designed to run on multiple computer platforms, we have concentrated our efforts to develop a user interface for the ubiquitous DOS environment. The VERI algorithms are compiled, executable programs. The interfaces run the VERI algorithms in Leave-One-Out mode using the Euclidean metric.« less

  5. Visualization Gallery from the Computational Research Division at Lawrence Berkeley National Laboratory

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    This excellent collection of visualization vignettes highlights research work done by the LBNL/NERSC Visualization Group and its collaborators from 1993 to the present. Images lead to technical explanations and project details, helping users to branch out to other related sources. Titles of the projects provide clues both to the imaging focus of the research and the scientific discipline for which the visualizations are intended. Only a few of the many titles/images/projects are listed here: 1) Hybrid Parallelism for Volume Rendering at Large Scale Analysis of Laser Wakefield Particle Acceleration Data; 2) Visualization of Microearthquake Data from Enhanced Geothermal Systems; 3) PointCloudXplore: Visualization and Analysis of 3D Gene Expression Data; 4) Visualization of Quantum Monte-Carlo simulations; 5) Global Cloud Resolving Models; 6) Visualization of large-scale GFDL/NOAA climate simulations; 7) Direct Numerical Simulation of Turbulent Flame Quenching by Fine Water Droplets; 8) Visualization of Magneto-rotational instability and turbulent angular momentum transport; 9) Sunfall: Visual Analytics for Astrophysics; 10) Fast Contour Descriptor Algorithm for Supernova Image Classification; 11) Supernova Recognition Using Support Vector Machines; 12) High Performance Visualization - Query-Driven Network Traffic Analysis; 13) Visualization of Magneto-rotational instability and turbulent angular momentum transport; 14) Life Sciences: Cell Division of Caulobacter Crescentus; 15) Electron Cloud Simulations.

  6. Interactive, Internet Delivery of Visualization via Structured,Prerendered multiresolution Imagery

    SciTech Connect (OSTI)

    Bethel, E. Wes; Yoon, Ilmi; Chen, Jerry

    2007-10-25

    One of the fundamental problems in remote visualization --where I/O and data intensive visualization activities take place at acentrally located supercomputer center and resulting imagery is deliveredto a remotely located user -- is reduced interactivity resulting from thecombination of high network latency and relatively low network bandwidth.This research project has produced a novel approach for latency-tolerantdelivery of visualization and rendering results where client-side framerate display performance is independent of source dataset size, imagesize, visualization technique or rendering complexity. As such, it is asuitable solution for remote visualization image delivery for anyvisualization or rendering application that can generate image frames inan ordered fashion. This new capability is suitable for use in addressingmany of ASCR s remote visualization needs, particularly deployment atopen computing facilities to provide remote visualization capabilities toteams of scientific researchers.

  7. Magneto-exciton-polariton condensation in a sub-wavelength high contrast grating based vertical microcavity

    SciTech Connect (OSTI)

    Fischer, J.; Brodbeck, S.; Worschech, L.; Kamp, M.; Schneider, C.; Hfling, S.; Zhang, B.; Wang, Z.; Deng, H.

    2014-03-03

    We comparably investigate the diamagnetic shift of an uncoupled quantum well exciton with a microcavity exciton-polariton condensate on the same device. The sample is composed of multiple GaAs quantum wells in an AlAs microcavity, surrounded by a Bragg reflector and a sub-wavelength high contrast grating reflector. Our study introduces an independent and easily applicable technique, namely, the measurement of the condensate diamagnetic shift, which directly probes matter contributions in polariton condensates and hence discriminates it from a conventional photon laser.

  8. Semantic Interaction for Visual Analytics: Toward Coupling Cognition and Computation

    SciTech Connect (OSTI)

    Endert, Alexander

    2014-07-01

    The dissertation discussed in this article [1] was written in the midst of an era of digitization. The world is becoming increasingly instrumented with sensors, monitoring, and other methods for generating data describing social, physical, and natural phenomena. Thus, data exist with the potential of being analyzed to uncover, or discover, the phenomena from which it was created. However, as the analytic models leveraged to analyze these data continue to increase in complexity and computational capability, how can visualizations and user interaction methodologies adapt and evolve to continue to foster discovery and sensemaking?

  9. Basic visual observation skills training course: Appendix B. Final report

    SciTech Connect (OSTI)

    Toquam, J.L.; Morris, F.A.; Griggs, J.R.

    1995-06-01

    The purpose of the basic visual observation skills course is to help safeguards inspectors evaluate and improve their skills in making observations during inspections and in evaluating and interpreting this information. The first 12 hours of the course provide training in five skill areas: perception and recognition; attention to detail; memory; mental imaging, mapping, and modeling skills; and judgment and decision making. Following this training is an integrating exercise involving a simulated safeguards inspection. This report contains the in-class exercises in the five skill areas; pre- and post-course exercises in closure, hidden figures, map memory, and mental rotations; the final examination; a training evaluation form; and the integrating exercise.

  10. Flow visualization study of the MOD-2 wind turbine wake

    SciTech Connect (OSTI)

    Liu H.T.; Waite, J.W.; Hiester, T.R.; Tacheron, P.H.; Srnsky, R.A.

    1983-06-01

    The specific objectives of the study reported were: to determine the geometry of the MOD-2 wind turbine wake in terms of wake height and width as a function of downstream distance under two conditions of atmospheric stability; to estimate the mean velocity deficit at several downstream stations in the turbine wake; and to investigate the behavior of the rotor-generated vortices, particularly their configuration and persistence. The background of the wake problem is briefly examined, including a discussion of the critical issues that the flow visualization study addresses. Experimental techniques and data analysis methods are described in detail. (LEW)

  11. A New Collaborative Tool for Visually Understanding National Health Indicators

    SciTech Connect (OSTI)

    Xu, Songhua; Jewell, Brian C; Steed, Chad A; Schryver, Jack C

    2012-01-01

    The authors propose a new online collaborative tool for visually understanding national health indicators, which facilitates the full spectrum of investigation of indicators, from an overview of all the correlation coefficients between variables, to investigation of subsets of selected variables, and to individual data element analysis. this tool is publicly accessible at http://cda.ornl.gov/heat/heatmap.html. In this paper, they discuss the key issues regarding the interface design and implementation. They also illustrate how to use their interface for analyzing the health indicator dataset by showing some key system views. In the end, they introduce and discuss some ongoing research efforts extending this work.

  12. Visualizing MCNP Tally Segment Geometry and Coupling Results with ABAQUS

    SciTech Connect (OSTI)

    J. R. Parry; J. A. Galbraith

    2007-11-01

    The Advanced Graphite Creep test, AGC-1, is planned for irradiation in the Advanced Test Reactor (ATR) in support of the Next Generation Nuclear Plant program. The experiment requires very detailed neutronics and thermal hydraulics analyses to show compliance with programmatic and ATR safety requirements. The MCNP model used for the neutronics analysis required hundreds of tally regions to provide the desired detail. A method for visualizing the hundreds of tally region geometries and the tally region results in 3 dimensions has been created to support the AGC-1 irradiation. Additionally, a method was created which would allow ABAQUS to access the results directly for the thermal analysis of the AGC-1 experiment.

  13. T.Rex Visual Analytics for Transactional Exploration

    ScienceCinema (OSTI)

    None

    2014-07-16

    T.Rex is PNNL's visual analytics tool that specializes in tabular structured data, like you might open with Excel. It's a client-server application, allowing the server to do a lot of the heavy lifting and the client to open spreadsheets with millions of rows. With datasets of that size, especially if you're unfamiliar with the contents, it's very hard to get a good grasp of what's in it using traditional tools. With T.Rex, the multiple views allow you to see categorical, temporal, numerical, relational, and summary data. The interactivity lets you look across your data and see how things relate to each other.

  14. X-ray scatter imaging of hepatocellular carcinoma in a mouse model using nanoparticle contrast agents

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Rand, Danielle; Derdak, Zoltan; Carlson, Rolf; Wands, Jack R.; Rose-Petruck, Christoph

    2015-10-29

    Hepatocellular carcinoma (HCC) is one of the most common malignant tumors worldwide and is almost uniformly fatal. Current methods of detection include ultrasound examination and imaging by CT scan or MRI; however, these techniques are problematic in terms of sensitivity and specificity, and the detection of early tumors (<1 cm diameter) has proven elusive. Better, more specific, and more sensitive detection methods are therefore urgently needed. Here we discuss the application of a newly developed x-ray imaging technique called Spatial Frequency Heterodyne Imaging (SFHI) for the early detection of HCC. SFHI uses x-rays scattered by an object to form anmore » image and is more sensitive than conventional absorption-based x-radiography. We show that tissues labeled in vivo with gold nanoparticle contrast agents can be detected using SFHI. We also demonstrate that directed targeting and SFHI of HCC tumors in a mouse model is possible through the use of HCC-specific antibodies. As a result, the enhanced sensitivity of SFHI relative to currently available techniques enables the x-ray imaging of tumors that are just a few millimeters in diameter and substantially reduces the amount of nanoparticle contrast agent required for intravenous injection relative to absorption-based x-ray imaging.« less

  15. Three-dimensional flow contrast imaging of deep tissue using noncontact diffuse correlation tomography

    SciTech Connect (OSTI)

    Lin, Yu; Huang, Chong; Irwin, Daniel; He, Lian; Shang, Yu; Yu, Guoqiang

    2014-03-24

    This study extended our recently developed noncontact diffuse correlation spectroscopy flowmetry system into noncontact diffuse correlation tomography (ncDCT) for three-dimensional (3-D) flow imaging of deep tissue. A linear array of 15 photodetectors and two laser sources connected to a mobile lens-focusing system enabled automatic and noncontact scanning of flow in a region of interest. These boundary measurements were combined with a finite element framework for DCT image reconstruction implemented into an existing software package. This technique was tested in computer simulations and using a tissue-like phantom with anomaly flow contrast design. The cylindrical tube-shaped anomaly was clearly reconstructed in both simulation and phantom. Recovered and assigned flow contrast changes in anomaly were found to be highly correlated: regression slope = 1.00, R{sup 2} = 1.00, and p < 10{sup −5} in simulation and regression slope ≥ 0.97, R{sup 2} ≥ 0.96, and p < 10{sup −3} in phantom. These results exhibit promise of our ncDCT technique for 3-D imaging of deep tissue blood flow heterogeneities.

  16. Phase-contrast imaging using ultrafast x-rays in laser-shocked materials

    SciTech Connect (OSTI)

    Workman, Jonathan B; Cobble, James A; Flippo, Kirk; Gautier, Donald C; Montgomery, David S; Offermann, Dustin T

    2010-01-01

    High-energy x-rays, > 10-keV, can be efficiently produced from ultrafast laser target interactions with many applications to dense target materials in Inertial Confinement Fusion (ICF) and High-Energy Density Physics (HEDP). These same x-rays can also be applied to measurements of low-density materials inside high-density hohlraum environments. In the experiments presented, high-energy x-ray images of laser-shocked polystyrene are produced through phase contrast imaging. The plastic targets are nominally transparent to traditional x-ray absorption but show detailed features in regions of high density gradients due to refractive effects often called phase contrast imaging. The 200-TW Trident laser is used both to produce the x-ray source and to shock the polystyrene target. X-rays at 17-keV produced from 2-ps, 100-J laser interactions with a 12-micron molybdenum wire are used to produce a small source size, required for optimizing refractive effects. Shocks are driven in the 1-mm thick polystyrene target using 2-ns, 250-J, 532-nm laser drive with phase plates. X-ray images of shocks compare well to 1-D hydro calculations, HELIOS-CR.

  17. X-ray Phase Contrast Imaging of Calcified Tissue and Biomaterial Structure in Bioreactor Engineered Tissues

    SciTech Connect (OSTI)

    Appel, Alyssa A.; Larson, Jeffery C.; Garson, III, Alfred B.; Guan, Huifeng; Zhong, Zhong; Nguyen, Bao-Ngoc; Fisher, John P.; Anastasio, Mark A.; Brey, Eric M.

    2014-11-04

    Tissues engineered in bioreactor systems have been used clinically to replace damaged tissues and organs. In addition, these systems are under continued development for many tissue engineering applications. The ability to quantitatively assess material structure and tissue formation is critical for evaluating bioreactor efficacy and for preimplantation assessment of tissue quality. These techniques allow for the nondestructive and longitudinal monitoring of large engineered tissues within the bioreactor systems and will be essential for the translation of these strategies to viable clinical therapies. X-ray Phase Contrast (XPC) imaging techniques have shown tremendous promise for a number of biomedical applications owing to their ability to provide image contrast based on multiple X-ray properties, including absorption, refraction, and scatter. In this research, mesenchymal stem cell-seeded alginate hydrogels were prepared and cultured under osteogenic conditions in a perfusion bioreactor. The constructs were imaged at various time points using XPC microcomputed tomography (µCT). Imaging was performed with systems using both synchrotron- and tube-based X-ray sources. XPC µCT allowed for simultaneous three-dimensional (3D) quantification of hydrogel size and mineralization, as well as spatial information on hydrogel structure and mineralization. Samples were processed for histological evaluation and XPC showed similar features to histology and quantitative analysis consistent with the histomorphometry. Furthermore, these results provide evidence of the significant potential of techniques based on XPC for noninvasive 3D imaging engineered tissues grown in bioreactors.

  18. X-ray scatter imaging of hepatocellular carcinoma in a mouse model using nanoparticle contrast agents

    SciTech Connect (OSTI)

    Rand, Danielle; Derdak, Zoltan; Carlson, Rolf; Wands, Jack R.; Rose-Petruck, Christoph

    2015-10-29

    Hepatocellular carcinoma (HCC) is one of the most common malignant tumors worldwide and is almost uniformly fatal. Current methods of detection include ultrasound examination and imaging by CT scan or MRI; however, these techniques are problematic in terms of sensitivity and specificity, and the detection of early tumors (<1 cm diameter) has proven elusive. Better, more specific, and more sensitive detection methods are therefore urgently needed. Here we discuss the application of a newly developed x-ray imaging technique called Spatial Frequency Heterodyne Imaging (SFHI) for the early detection of HCC. SFHI uses x-rays scattered by an object to form an image and is more sensitive than conventional absorption-based x-radiography. We show that tissues labeled in vivo with gold nanoparticle contrast agents can be detected using SFHI. We also demonstrate that directed targeting and SFHI of HCC tumors in a mouse model is possible through the use of HCC-specific antibodies. As a result, the enhanced sensitivity of SFHI relative to currently available techniques enables the x-ray imaging of tumors that are just a few millimeters in diameter and substantially reduces the amount of nanoparticle contrast agent required for intravenous injection relative to absorption-based x-ray imaging.

  19. Anatomical noise in contrast-enhanced digital mammography. Part I. Single-energy imaging

    SciTech Connect (OSTI)

    Hill, Melissa L.; Yaffe, Martin J.; Mainprize, James G.; Carton, Ann-Katherine; Muller, Serge; Ebrahimi, Mehran; Jong, Roberta A.; Dromain, Clarisse

    2013-05-15

    Purpose: The use of an intravenously injected iodinated contrast agent could help increase the sensitivity of digital mammography by adding information on tumor angiogenesis. Two approaches have been made for clinical implementation of contrast-enhanced digital mammography (CEDM), namely, single-energy (SE) and dual-energy (DE) imaging. In each technique, pairs of mammograms are acquired, which are then subtracted with the intent to cancel the appearance of healthy breast tissue to permit sensitive detection and specific characterization of lesions. Patterns of contrast agent uptake in the healthy parenchyma, and uncanceled signal from background tissue create a 'clutter' that can mask or mimic an enhancing lesion. This type of 'anatomical noise' is often the limiting factor in lesion detection tasks, and thus, noise quantification may be useful for cascaded systems analysis of CEDM and for phantom development. In this work, the authors characterize the anatomical noise in CEDM clinical images and the authors evaluate the influence of the x-ray energy used for acquisition, the presence of iodine in the breast, and the timing of imaging postcontrast administration on anatomical noise. The results are presented in a two-part report, with SE CEDM described here, and DE CEDM in Part II. Methods: A power law is used to model anatomical noise in CEDM images. The exponent, {beta}, which describes the anatomical structure, and the constant {alpha}, which represents the magnitude of the noise, are determined from Wiener spectra (WS) measurements on images. A total of 42 SE CEDM cases from two previous clinical pilot studies are assessed. The parameters {alpha} and {beta} are measured both from unprocessed images and from subtracted images. Results: Consistent results were found between the two SE CEDM pilot studies, where a significant decrease in {beta} from a value of approximately 3.1 in the unprocessed images to between about 1.1 and 1.8 in the subtracted images was observed. Increasing the x-ray energy from that used in conventional DM to those of typical SE CEDM spectra with mean energies above 33 keV significantly decreased {alpha} by about a factor of 19, in agreement with theory. Compared to precontrast images, in the unprocessed postcontrast images at 30 s postinjection, {alpha} was larger by about 7.4 Multiplication-Sign 10{sup -7} mm{sup 2} and {beta} was decreased by 0.2. While {alpha} did not vary significantly with the time after contrast administration, {beta} from the unprocessed image WS increased linearly, and {beta} from subtracted image WS increased with an initial quadratic relationship that plateaued by about 5 min postinjection. Conclusions: The presence of an iodinated contrast agent in the breast produced small, but significant changes in the power law parameters of unprocessed CEDM images compared to the precontrast images. Image subtraction in SE CEDM significantly reduced anatomical noise compared to conventional DM, with a reduction in both {alpha} and {beta} by about a factor of 2. The data presented here, and in Part II of this work, will be useful for modeling of CEDM backgrounds, for systems characterization and for lesion detectability experiments using models that account for anatomical noise.

  20. Visual Sample Plan Version 7.0 User's Guide

    SciTech Connect (OSTI)

    Matzke, Brett D.; Newburn, Lisa LN; Hathaway, John E.; Bramer, Lisa M.; Wilson, John E.; Dowson, Scott T.; Sego, Landon H.; Pulsipher, Brent A.

    2014-03-01

    User's guide for VSP 7.0 This user's guide describes Visual Sample Plan (VSP) Version 7.0 and provides instructions for using the software. VSP selects the appropriate number and location of environmental samples to ensure that the results of statistical tests performed to provide input to risk decisions have the required confidence and performance. VSP Version 7.0 provides sample-size equations or algorithms needed by specific statistical tests appropriate for specific environmental sampling objectives. It also provides data quality assessment and statistical analysis functions to support evaluation of the data and determine whether the data support decisions regarding sites suspected of contamination. The easy-to-use program is highly visual and graphic. VSP runs on personal computers with Microsoft Windows operating systems (XP, Vista, Windows 7, and Windows 8). Designed primarily for project managers and users without expertise in statistics, VSP is applicable to two- and three-dimensional populations to be sampled (e.g., rooms and buildings, surface soil, a defined layer of subsurface soil, water bodies, and other similar applications) for studies of environmental quality. VSP is also applicable for designing sampling plans for assessing chem/rad/bio threat and hazard identification within rooms and buildings, and for designing geophysical surveys for unexploded ordnance (UXO) identification.

  1. Sort-First, Distributed Memory Parallel Visualization and Rendering

    SciTech Connect (OSTI)

    Bethel, E. Wes; Humphreys, Greg; Paul, Brian; Brederson, J. Dean

    2003-07-15

    While commodity computing and graphics hardware has increased in capacity and dropped in cost, it is still quite difficult to make effective use of such systems for general-purpose parallel visualization and graphics. We describe the results of a recent project that provides a software infrastructure suitable for general-purpose use by parallel visualization and graphics applications. Our work combines and extends two technologies: Chromium, a stream-oriented framework that implements the OpenGL programming interface; and OpenRM Scene Graph, a pipelined-parallel scene graph interface for graphics data management. Using this combination, we implement a sort-first, distributed memory, parallel volume rendering application. We describe the performance characteristics in terms of bandwidth requirements and highlight key algorithmic considerations needed to implement the sort-first system. We characterize system performance using a distributed memory parallel volume rendering application, a nd present performance gains realized by using scene specific knowledge to accelerate rendering through reduced network bandwidth. The contribution of this work is an exploration of general-purpose, sort-first architecture performance characteristics as applied to distributed memory, commodity hardware, along with a description of the algorithmic support needed to realize parallel, sort-first implementations.

  2. Coherent Image Layout using an Adaptive Visual Vocabulary

    SciTech Connect (OSTI)

    Dillard, Scott E.; Henry, Michael J.; Bohn, Shawn J.; Gosink, Luke J.

    2013-03-06

    When querying a huge image database containing millions of images, the result of the query may still contain many thousands of images that need to be presented to the user. We consider the problem of arranging such a large set of images into a visually coherent layout, one that places similar images next to each other. Image similarity is determined using a bag-of-features model, and the layout is constructed from a hierarchical clustering of the image set by mapping an in-order traversal of the hierarchy tree into a space-filling curve. This layout method provides strong locality guarantees so we are able to quantitatively evaluate performance using standard image retrieval benchmarks. Performance of the bag-of-features method is best when the vocabulary is learned on the image set being clustered. Because learning a large, discriminative vocabulary is a computationally demanding task, we present a novel method for efficiently adapting a generic visual vocabulary to a particular dataset. We evaluate our clustering and vocabulary adaptation methods on a variety of image datasets and show that adapting a generic vocabulary to a particular set of images improves performance on both hierarchical clustering and image retrieval tasks.

  3. Visualizing Diurnal Population Change in Urban Areas for Emergency Management

    SciTech Connect (OSTI)

    Kobayashi, Tetsuo; Medina, Richard M; Cova, Thomas

    2011-01-01

    There is an increasing need for a quick, simple method to represent diurnal population change in metropolitan areas for effective emergency management and risk analysis. Many geographic studies rely on decennial U.S. Census data that assume that urban populations are static in space and time. This has obvious limitations in the context of dynamic geographic problems. The U.S. Department of Transportation publishes population data at the transportation analysis zone level in fifteen-minute increments. This level of spatial and temporal detail allows for improved dynamic population modeling. This article presents a methodology for visualizing and analyzing diurnal population change for metropolitan areas based on this readily available data. Areal interpolation within a geographic information system is used to create twenty-four (one per hour) population surfaces for the larger metropolitan area of Salt Lake County, Utah. The resulting surfaces represent diurnal population change for an average workday and are easily combined to produce an animation that illustrates population dynamics throughout the day. A case study of using the method to visualize population distributions in an emergency management context is provided using two scenarios: a chemical release and a dirty bomb in Salt Lake County. This methodology can be used to address a wide variety of problems in emergency management.

  4. Perm Web: remote parallel and distributed volume visualization

    SciTech Connect (OSTI)

    Wittenbrink, C.M.; Kim, K.; Story, J.; Pang, A.; Hollerbach, K.; Max, N.

    1997-01-01

    In this paper we present a system for visualizing volume data from remote supercomputers (PermWeb). We have developed both parallel volume rendering algorithms, and the World Wide Web software for accessing the data at the remote sites. The implementation uses Hypertext Markup Language (HTML), Java, and Common Gateway Interface (CGI) scripts to connect World Wide Web (WWW) servers/clients to our volume renderers. The front ends are interactive Java classes for specification of view, shading, and classification inputs. We present performance results, and implementation details for connections to our computing resources at the University of California Santa Cruz including a MasPar MP-2, SGI Reality Engine-RE2, and SGI Challenge machines. We apply the system to the task of visualizing trabecular bone from finite element simulations. Fast volume rendering on remote compute servers through a web interface allows us to increase the accessibility of the results to more users. User interface issues, overviews of parallel algorithm developments, and overall system interfaces and protocols are presented. Access is available through Uniform Resource Locator (URL) http://www.cse.ucsc.edu/research/slvg/. 26 refs., 7 figs.

  5. Web-Based Visual Analytics for Social Media

    SciTech Connect (OSTI)

    Best, Daniel M.; Bruce, Joseph R.; Dowson, Scott T.; Love, Oriana J.; McGrath, Liam R.

    2012-05-20

    Social media provides a rich source of data that reflects current trends and public opinion on a multitude of topics. The data can be harvested from Twitter, Facebook, Blogs, and other social applications. The high rate of adoption of social media has created a domain that has an ever expanding volume of data that make it difficult to use the raw data for analysis. Information visual analytics is key in drawing out features of interest in social media. The Scalable Reasoning System is an application that couples a back end server performing analysis algorithms and an intuitive front end visualization to allow for investigation. We provide a componentized system that can be rapidly adapted to customer needs such that the information they are most interested in is brought to their attention through the application. To this end, we have developed a social media application for use by emergency operations for the city of Seattle to show current weather and traffic trends which is important for their tasks.

  6. Advanced 3D Sensing and Visualization System for Unattended Monitoring

    SciTech Connect (OSTI)

    Carlson, J.J.; Little, C.Q.; Nelson, C.L.

    1999-01-01

    The purpose of this project was to create a reliable, 3D sensing and visualization system for unattended monitoring. The system provides benefits for several of Sandia's initiatives including nonproliferation, treaty verification, national security and critical infrastructure surety. The robust qualities of the system make it suitable for both interior and exterior monitoring applications. The 3D sensing system combines two existing sensor technologies in a new way to continuously maintain accurate 3D models of both static and dynamic components of monitored areas (e.g., portions of buildings, roads, and secured perimeters in addition to real-time estimates of the shape, location, and motion of humans and moving objects). A key strength of this system is the ability to monitor simultaneous activities on a continuous basis, such as several humans working independently within a controlled workspace, while also detecting unauthorized entry into the workspace. Data from the sensing system is used to identi~ activities or conditions that can signi~ potential surety (safety, security, and reliability) threats. The system could alert a security operator of potential threats or could be used to cue other detection, inspection or warning systems. An interactive, Web-based, 3D visualization capability was also developed using the Virtual Reality Modeling Language (VRML). The intex%ace allows remote, interactive inspection of a monitored area (via the Internet or Satellite Links) using a 3D computer model of the area that is rendered from actual sensor data.

  7. Geospatial Visualization of Global Satellite Images with Vis-EROS

    SciTech Connect (OSTI)

    Standart, G. D.; Stulken, K. R.; Zhang, Xuesong; Zong, Ziliang

    2011-04-13

    The Earth Resources Observation and Science (EROS) Center of U.S. Geological Survey is currently managing and maintaining the world largest satellite images distribution system, which provides 24/7 free download service for researchers all over the globe in many areas such as Geology, Hydrology, Climate Modeling, and Earth Sciences. A large amount of geospatial data contained in satellite images maintained by EROS is generated every day. However, this data is not well utilized due to the lack of efficient data visualization tools. This software implements a method for visualizing various characteristics of the global satellite image download requests. More specifically, Keyhole Markup Language (KML) files are generated which can be loaded into an earth browser such as Google Earth. Colored rectangles associated with stored satellite scenes are painted onto the earth browser; and the color and opacity of each rectangle is varied as a function of the popularity of the corresponding satellite image. An analysis of the geospatial information obtained relative to specified time constraints provides an ability to relate image download requests to environmental, political, and social events.

  8. Correlation between human observer performance and model observer performance in differential phase contrast CT

    SciTech Connect (OSTI)

    Li, Ke; Garrett, John; Chen, Guang-Hong

    2013-11-15

    Purpose: With the recently expanding interest and developments in x-ray differential phase contrast CT (DPC-CT), the evaluation of its task-specific detection performance and comparison with the corresponding absorption CT under a given radiation dose constraint become increasingly important. Mathematical model observers are often used to quantify the performance of imaging systems, but their correlations with actual human observers need to be confirmed for each new imaging method. This work is an investigation of the effects of stochastic DPC-CT noise on the correlation of detection performance between model and human observers with signal-known-exactly (SKE) detection tasks.Methods: The detectabilities of different objects (five disks with different diameters and two breast lesion masses) embedded in an experimental DPC-CT noise background were assessed using both model and human observers. The detectability of the disk and lesion signals was then measured using five types of model observers including the prewhitening ideal observer, the nonprewhitening (NPW) observer, the nonprewhitening observer with eye filter and internal noise (NPWEi), the prewhitening observer with eye filter and internal noise (PWEi), and the channelized Hotelling observer (CHO). The same objects were also evaluated by four human observers using the two-alternative forced choice method. The results from the model observer experiment were quantitatively compared to the human observer results to assess the correlation between the two techniques.Results: The contrast-to-detail (CD) curve generated by the human observers for the disk-detection experiments shows that the required contrast to detect a disk is inversely proportional to the square root of the disk size. Based on the CD curves, the ideal and NPW observers tend to systematically overestimate the performance of the human observers. The NPWEi and PWEi observers did not predict human performance well either, as the slopes of their CD curves tended to be steeper. The CHO generated the best quantitative agreement with human observers with its CD curve overlapping with that of human observer. Statistical equivalence between CHO and humans can be claimed within 11% of the human observer results, including both the disk and lesion detection experiments.Conclusions: The model observer method can be used to accurately represent human observer performance with the stochastic DPC-CT noise for SKE tasks with sizes ranging from 8 to 128 pixels. The incorporation of the anatomical noise remains to be studied.

  9. Visualizing Energy Infrastructure Exposure to Storm Surge and Sea-Level

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Rise | Department of Energy Visualizing Energy Infrastructure Exposure to Storm Surge and Sea-Level Rise Visualizing Energy Infrastructure Exposure to Storm Surge and Sea-Level Rise November 2, 2015 - 11:10am Addthis Alice Lippert Alice Lippert Senior Technical Advisor to the Deputy Assistant Secretary of Energy Infrastructure Modeling and Analysis The Office of Electricity Delivery and Energy Reliability (OE) recently released an innovative, interactive visualization tool to highlight the

  10. Comparison of different computed radiography systems: Physical characterization and contrast detail analysis

    SciTech Connect (OSTI)

    Rivetti, Stefano; Lanconelli, Nico; Bertolini, Marco; Nitrosi, Andrea; Burani, Aldo; Acchiappati, Domenico

    2010-02-15

    Purpose: In this study, five different units based on three different technologies--traditional computed radiography (CR) units with granular phosphor and single-side reading, granular phosphor and dual-side reading, and columnar phosphor and line-scanning reading--are compared in terms of physical characterization and contrast detail analysis. Methods: The physical characterization of the five systems was obtained with the standard beam condition RQA5. Three of the units have been developed by FUJIFILM (FCR ST-VI, FCR ST-BD, and FCR Velocity U), one by Kodak (Direct View CR 975), and one by Agfa (DX-S). The quantitative comparison is based on the calculation of the modulation transfer function (MTF), noise power spectrum (NPS), and detective quantum efficiency (DQE). Noise investigation was also achieved by using a relative standard deviation analysis. Psychophysical characterization is assessed by performing a contrast detail analysis with an automatic reading of CDRAD images. Results: The most advanced units based on columnar phosphors provide MTF values in line or better than those from conventional CR systems. The greater thickness of the columnar phosphor improves the efficiency, allowing for enhanced noise properties. In fact, NPS values for standard CR systems are remarkably higher for all the investigated exposures and especially for frequencies up to 3.5 lp/mm. As a consequence, DQE values for the three units based on columnar phosphors and line-scanning reading, or granular phosphor and dual-side reading, are neatly better than those from conventional CR systems. Actually, DQE values of about 40% are easily achievable for all the investigated exposures. Conclusions: This study suggests that systems based on the dual-side reading or line-scanning reading with columnar phosphors provide a remarkable improvement when compared to conventional CR units and yield results in line with those obtained from most digital detectors for radiography.

  11. Polluting of Winter Convective Clouds upon Transition from Ocean Inland Over Central California: Contrasting Case Studies

    SciTech Connect (OSTI)

    Rosenfeld, Daniel; Chemke, Rei; Prather, Kimberly; Suski, Kaitlyn; Comstock, Jennifer M.; Schmid, Beat; Tomlinson, Jason M.; Jonsson, Haf

    2014-01-01

    In-situ aircraft measurements of aerosol chemical and cloud microphysical properties were conducted during the CalWater campaign in February and March 2011 over the Sierra Nevada Mountains and the coastal waters of central California. The main objective was to elucidate the impacts of aerosol properties on clouds and precipitation forming processes. In order to accomplish this, we compared contrasting cases of clouds that ingested aerosols from different sources. The results showed that clouds containing pristine oceanic air had low cloud drop concentrations and started to develop rain 500 m above their base. This occurred both over the ocean and over the Sierra Nevada, mainly in the early morning when the radiatively cooled stable continental boundary layer was decoupled from the cloud base. Supercooled rain dominated the precipitation that formed in growing convective clouds in the pristine air, up to the -21C isotherm level. A contrasting situation was documented in the afternoon over the foothills of the Sierra Nevada, when the clouds ingested high pollution aerosol concentrations produced in the Central Valley. This led to slow growth of the cloud drop effective radius with height and suppressed and even prevented the initiation of warm rain while contributing to the development of ice hydrometeors in the form of graupel. Our results show that cloud condensation and ice nuclei were the limiting factors that controlled warm rain and ice processes, respectively, while the unpolluted clouds in the same air mass produced precipitation quite efficiently. These findings provide the motivation for deeper investigations into the nature of the aerosols seeding clouds.

  12. Automated identification of retinal vessels using a multiscale directional contrast quantification (MDCQ) strategy

    SciTech Connect (OSTI)

    Zhen, Yi; Zhang, Xinyuan; Wang, Ningli E-mail: puj@upmc.edu; Gu, Suicheng; Meng, Xin; Zheng, Bin; Pu, Jiantao E-mail: puj@upmc.edu

    2014-09-15

    Purpose: A novel algorithm is presented to automatically identify the retinal vessels depicted in color fundus photographs. Methods: The proposed algorithm quantifies the contrast of each pixel in retinal images at multiple scales and fuses the resulting consequent contrast images in a progressive manner by leveraging their spatial difference and continuity. The multiscale strategy is to deal with the variety of retinal vessels in width, intensity, resolution, and orientation; and the progressive fusion is to combine consequent images and meanwhile avoid a sudden fusion of image noise and/or artifacts in space. To quantitatively assess the performance of the algorithm, we tested it on three publicly available databases, namely, DRIVE, STARE, and HRF. The agreement between the computer results and the manual delineation in these databases were quantified by computing their overlapping in both area and length (centerline). The measures include sensitivity, specificity, and accuracy. Results: For the DRIVE database, the sensitivities in identifying vessels in area and length were around 90% and 70%, respectively, the accuracy in pixel classification was around 99%, and the precisions in terms of both area and length were around 94%. For the STARE database, the sensitivities in identifying vessels were around 90% in area and 70% in length, and the accuracy in pixel classification was around 97%. For the HRF database, the sensitivities in identifying vessels were around 92% in area and 83% in length for the healthy subgroup, around 92% in area and 75% in length for the glaucomatous subgroup, around 91% in area and 73% in length for the diabetic retinopathy subgroup. For all three subgroups, the accuracy was around 98%. Conclusions: The experimental results demonstrate that the developed algorithm is capable of identifying retinal vessels depicted in color fundus photographs in a relatively reliable manner.

  13. Microsoft Word - DOE-ID-14-085 Visual Aids for a Customer B3...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    5 SECTION A. Project Title: Visual Aids for a Customer SECTION B. Project Description The manufacturer will construct two mockup reactor assemblies out of stainless steel to be...

  14. Quantitative Visualization of ChIP-chip Data by Using Linked...

    Office of Scientific and Technical Information (OSTI)

    As a result, it is critical to have a tool to facilitate the quantitative visualization of differences between transcription factors and the genomic regions they bind to understand ...

  15. OpenGl Visualization Tool and Library Version: 1.0

    Energy Science and Technology Software Center (OSTI)

    2010-06-22

    GLVis is an OpenGL tool for visualization of finite element meshes and functions. When started without any options, GLVis starts a server, which waits for a socket connections and visualizes any recieved data. This way the results of simulations on a remote (parallel) machine can be visualized on the lical user desktop. GLVis can also be used to visualize a mesh with or without a finite element function (solution). It can run a batch sequencemore » of commands (GLVis scripts), or display previously saved socket streams.« less

  16. Highly parallel vector visualization using line integral convolution

    SciTech Connect (OSTI)

    Cabral, B.; Leedom, C.

    1995-12-01

    Line Integral Convolution (LIC) is an effective imaging operator for visualizing large vector fields. It works by blurring an input image along local vector field streamlines yielding an output image. LIC is highly parallelizable because it uses only local read-sharing of input data and no write-sharing of output data. Both coarse- and fine-grained implementations have been developed. The coarse-grained implementation uses a straightforward row-tiling of the vector field to parcel out work to multiple CPUs. The fine-grained implementation uses a series of image warps and sums to compute the LIC algorithm across the entire vector field at once. This is accomplished by novel use of high-performance graphics hardware texture mapping and accumulation buffers.

  17. Remote visual inspection for NDE in power plants

    SciTech Connect (OSTI)

    Samsonov, P. )

    1993-06-01

    Remote visual inspection equipment such as borescopes, and video scopes give power plant nondestructive examination (NDE) groups the necessary tools to establish superior corrective and preventive plant maintenance programs. These scopes allow the user to evaluate the condition of pipes, boilers, turbines, heat exchangers, and other critical machinery without costly and time-consuming disassembly. Overall plant efficiency is increased and the likelihood of catastrophic failure is reduced significantly. Insertion diameters vary from 0.6 mm to 20 mm and come in lengths of just a few inches to as long as 100 ft. (30 m). Ancillary equipment such as video and digital processors provides a permanent record of the inspection and uses sophisticated three-dimensional (3-D) measurement, trend analysis, documentation, and image manipulation.

  18. Visualizing 3D velocity fields near contour surfaces. Revision 1

    SciTech Connect (OSTI)

    Max, N.; Crawfis, R.; Grant, C.

    1994-08-08

    Vector field rendering is difficult in 3D because the vector icons overlap and hide each other. We propose four different techniques for visualizing vector fields only near surfaces. The first uses motion blurred particles in a thickened region around the surface. The second uses a voxel grid to contain integral curves of the vector field. The third uses many antialiased lines through the surface, and the fourth uses hairs sprouting from the surface and then bending in the direction of the vector field. All the methods use the graphics pipeline, allowing real time rotation and interaction, and the first two methods can animate the texture to move in the flow determined by the velocity field.

  19. Human alteration of the rural landscape: Variations in visual perception

    SciTech Connect (OSTI)

    Cloquell-Ballester, Vicente-Agustin Carmen Torres-Sibille, Ana del; Cloquell-Ballester, Victor-Andres; Santamarina-Siurana, Maria Cristina

    2012-01-15

    The objective of this investigation is to evaluate how visual perception varies as the rural landscape is altered by human interventions of varying character. An experiment is carried out using Semantic Differential Analysis to analyse the effect of the character and the type of the intervention on perception. Interventions are divided into elements of 'permanent industrial character', 'elements of permanent rural character' and 'elements of temporary character', and these categories are sub-divided into smaller groups according to the type of development. To increase the reliability of the results, the Intraclass Correlation Coefficient tool, is applied to validate the semantic space of the perceptual responses and to determine the number of subjects required for a reliable evaluation of the scenes.

  20. Final Report for "Analyzing and visualizing next generation climate data"

    SciTech Connect (OSTI)

    Pletzer, Alexander

    2012-11-13

    The project "Analyzing and visualizing next generation climate data" adds block-structured (mosaic) grid support, parallel processing, and 2D/3D curvilinear interpolation to the open-source UV-CDAT climate data analysis tool. Block structured grid support complies to the Gridspec extension submitted to the Climate and Forecast metadata conventions. It contains two parts: aggregation of data spread over multiple mosaic tiles (M-SPEC) and aggregation of temporal data stored in different files (F-SPEC). Together, M-SPEC and F-SPEC allow users to interact with data stored in multiple files as if the data were in a single file. For computational expensive tasks, a flexible, multi-dimensional, multi-type distributed array class allows users to process data in parallel using remote memory access. Both nodal and cell based interpolation is supported; users can choose between different interpolation libraries including ESMF and LibCF depending on the their particular needs.

  1. Wide-area, real-time monitoring and visualization system

    DOE Patents [OSTI]

    Budhraja, Vikram S.; Dyer, James D.; Martinez Morales, Carlos A.

    2011-11-15

    A real-time performance monitoring system for monitoring an electric power grid. The electric power grid has a plurality of grid portions, each grid portion corresponding to one of a plurality of control areas. The real-time performance monitoring system includes a monitor computer for monitoring at least one of reliability metrics, generation metrics, transmission metrics, suppliers metrics, grid infrastructure security metrics, and markets metrics for the electric power grid. The data for metrics being monitored by the monitor computer are stored in a data base, and a visualization of the metrics is displayed on at least one display computer having a monitor. The at least one display computer in one said control area enables an operator to monitor the grid portion corresponding to a different said control area.

  2. Wide-area, real-time monitoring and visualization system

    DOE Patents [OSTI]

    Budhraja, Vikram S.; Dyer, James D.; Martinez Morales, Carlos A.

    2013-03-19

    A real-time performance monitoring system for monitoring an electric power grid. The electric power grid has a plurality of grid portions, each grid portion corresponding to one of a plurality of control areas. The real-time performance monitoring system includes a monitor computer for monitoring at least one of reliability metrics, generation metrics, transmission metrics, suppliers metrics, grid infrastructure security metrics, and markets metrics for the electric power grid. The data for metrics being monitored by the monitor computer are stored in a data base, and a visualization of the metrics is displayed on at least one display computer having a monitor. The at least one display computer in one said control area enables an operator to monitor the grid portion corresponding to a different said control area.

  3. Visualization and analysis of eddies in a global ocean simulation

    SciTech Connect (OSTI)

    Williams, Sean J; Hecht, Matthew W; Petersen, Mark; Strelitz, Richard; Maltrud, Mathew E; Ahrens, James P; Hlawitschka, Mario; Hamann, Bernd

    2010-10-15

    Eddies at a scale of approximately one hundred kilometers have been shown to be surprisingly important to understanding large-scale transport of heat and nutrients in the ocean. Due to difficulties in observing the ocean directly, the behavior of eddies below the surface is not very well understood. To fill this gap, we employ a high-resolution simulation of the ocean developed at Los Alamos National Laboratory. Using large-scale parallel visualization and analysis tools, we produce three-dimensional images of ocean eddies, and also generate a census of eddy distribution and shape averaged over multiple simulation time steps, resulting in a world map of eddy characteristics. As expected from observational studies, our census reveals a higher concentration of eddies at the mid-latitudes than the equator. Our analysis further shows that mid-latitude eddies are thicker, within a range of 1000-2000m, while equatorial eddies are less than 100m thick.

  4. Interactive Visual Analysis of High Throughput Text Streams

    SciTech Connect (OSTI)

    Steed, Chad A; Potok, Thomas E; Patton, Robert M; Goodall, John R; Maness, Christopher S; Senter, James K

    2012-01-01

    The scale, velocity, and dynamic nature of large scale social media systems like Twitter demand a new set of visual analytics techniques that support near real-time situational awareness. Social media systems are credited with escalating social protest during recent large scale riots. Virtual communities form rapidly in these online systems, and they occasionally foster violence and unrest which is conveyed in the users language. Techniques for analyzing broad trends over these networks or reconstructing conversations within small groups have been demonstrated in recent years, but state-of- the-art tools are inadequate at supporting near real-time analysis of these high throughput streams of unstructured information. In this paper, we present an adaptive system to discover and interactively explore these virtual networks, as well as detect sentiment, highlight change, and discover spatio- temporal patterns.

  5. Visualization of Charge Distribution in a Lithium Battery Electrode

    SciTech Connect (OSTI)

    Liu, Jun; Kunz, Martin; Chen, Kai; Tamura, Nobumichi; Richardson, Thomas J.

    2010-07-02

    We describe a method for direct determination and visualization of the distribution of charge in a composite electrode. Using synchrotron X-ray microdiffraction, state-of-charge profiles in-plane and normal to the current collector were measured. In electrodes charged at high rate, the signatures of nonuniform current distribution were evident. The portion of a prismatic cell electrode closest to the current collector tab had the highest state of charge due to electronic resistance in the composite electrode and supporting foil. In a coin cell electrode, the active material at the electrode surface was more fully charged than that close to the current collector because the limiting factor in this case is ion conduction in the electrolyte contained within the porous electrode.

  6. Case Study: The ''Office of Real Soon Now'' for Visualization

    SciTech Connect (OSTI)

    Uselton, S.P.

    2002-03-27

    A variation on the ''Office of Real Soon Now'' has been designed and deployed at Lawrence Livermore National Laboratory (LLNL). The ASCI VIEWS (VIEWS) program [1], the element of the program developing tools for data management and visualization, is investigating a variety of display technologies, motivated in part by the large size, high resolution, and complexity of data sets that ASCI users frequently explore and analyze. While large, tiled displays have been well received at LLNL, availability and ease-of-use problems have motivated exploration of alternatives [2]. The ''Office of Real Soon Now'' Project [3, 4, 5] at the University of North Carolina at Chapel Hill (UNC) has built ''low fidelity'' versions of the ''Office of the Future'' [6, 7] that can be installed in users' offices now. At UNC, the Office of Real Soon Now installations use only a small number of relatively inexpensive projectors,generally two or three, that limit resolution and features. These projectors are connected to Microsoft Windows PCs or Apple computers that are used for daily activities, such as reading email, writing papers, and debugging programs. Even though the UNC faculty involved are predominantly computer graphics researchers, these display systems are used mainly for text-oriented applications [5]. Designing, developing, and deploying an office-based system at LLNL would provide opportunities to adapt the system to our specific uses and to evaluate such systems for a range of tasks beyond those typically found at UNC. The goals of the LLNL display system are to exceed previous UNC versions in resolution, to run Unix-based applications, and to support interactive visualization of simulation data better than can be done via current workstations and monitors.

  7. Anatomical noise in contrast-enhanced digital mammography. Part II. Dual-energy imaging

    SciTech Connect (OSTI)

    Hill, Melissa L.; Yaffe, Martin J.; Mainprize, James G.; Carton, Ann-Katherine; Saab-Puong, Sylvie; Iordache, R?zvan; Muller, Serge; Jong, Roberta A.; Dromain, Clarisse

    2013-08-15

    Purpose: Dual-energy (DE) contrast-enhanced digital mammography (CEDM) uses an iodinated contrast agent in combination with digital mammography (DM) to evaluate lesions on the basis of tumor angiogenesis. In DE imaging, low-energy (LE) and high-energy (HE) images are acquired after contrast administration and their logarithms are subtracted to cancel the appearance of normal breast tissue. Often there is incomplete signal cancellation in the subtracted images, creating a background clutter that can impair lesion detection. This is the second component of a two-part report on anatomical noise in CEDM. In Part I the authors characterized the anatomical noise for single-energy (SE) temporal subtraction CEDM by a power law, with model parameters ? and ?. In this work the authors quantify the anatomical noise in DE CEDM clinical images and compare this with the noise in SE CEDM. The influence on the anatomical noise of the presence of iodine in the breast, the timing of imaging postcontrast administration, and the x-ray energy used for acquisition are each evaluated.Methods: The power law parameters, ? and ?, were measured from unprocessed LE and HE images and from DE subtracted images to quantify the anatomical noise. A total of 98 DE CEDM cases acquired in a previous clinical pilot study were assessed. Conventional DM images from 75 of the women were evaluated for comparison with DE CEDM. The influence of the imaging technique on anatomical noise was determined from an analysis of differences between the power law parameters as measured in DM, LE, HE, and DE subtracted images for each subject.Results: In DE CEDM, weighted image subtraction lowers ? to about 1.1 from 3.2 and 3.1 in LE and HE unprocessed images, respectively. The presence of iodine has a small but significant effect in LE images, reducing ? by about 0.07 compared to DM, with ? unchanged. Increasing the x-ray energy, from that typical in DM to a HE beam, significantly decreases ? by about 2 10{sup ?5} mm{sup 2}, and lowers ? by about 0.14 compared to LE images. A comparison of SE and DE CEDM at 4 min postcontrast shows equivalent power law parameters in unprocessed images, and lower ? and ? by about 3 10{sup ?5} mm{sup 2} and 0.50, respectively, in DE versus SE subtracted images.Conclusions: Image subtraction in both SE and DE CEDM reduces ? by over a factor of 2, while maintaining ? below that in DM. Given the equivalent ? between SE and DE unprocessed CEDM images, and the smaller anatomical noise in the DE subtracted images, the DE approach may have an advantage over SE CEDM. It will be necessary to test this potential advantage in future lesion detectability experiments, which account for realistic lesion signals. The authors' results suggest that LE images could be used in place of DM images in CEDM exam interpretation.

  8. Chemistry of Tantalum Clusters in Solution And on SiO(2) Supports: Analogies And Contrasts

    SciTech Connect (OSTI)

    Nemana, S.; Okamoto, N.L.; Browning, N.D.; Gates, B.C.

    2009-06-03

    Tantalum clusters have been synthesized from Ta(CH{sub 2}Ph){sub 5} on the surface of porous fumed SiO{sub 2}. When these clusters are small, incorporating, on average, several Ta atoms, their chemistry is similar to that of molecular tantalum clusters (and other early transition-metal) clusters. For example, The Ta-Ta bonds in these small supported clusters have been characterized by extended X-ray absorption fine structure (EXAFS), IR, and UV-vis spectroscopy, being similar to those in molecular analogues. The redox reactions of the supported clusters, characterized by X-ray absorption near-edge structure, are analogous to those of early transition-metal clusters in solution. In contrast to the largest of these clusters in solution and in the solid state, those supported on SiO{sub 2} are raftlike, facilitating the substantial metal-support-oxygen bonding that is evident in the EXAFS spectra. Samples consisting of tantalum clusters on SiO{sub 2} catalyze alkane disproportionation and the conversion of methane with n-butane to give other alkanes, but catalytic properties of analogous clusters in solution have barely been explored.

  9. When will low-contrast features be visible in a STEM X-ray spectrum image?

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Parish, Chad M.

    2015-02-03

    When will a small or low-contrast feature, such as an embedded second-phase particle, be visible in a scanning transmission electron microscopy (STEM) X-ray map? This work illustrates a computationally inexpensive method to simulate X-ray maps and spectrum images (SIs), based upon the equations of X-ray generation and detection. To particularize the general procedure, an example of nanostructured ferritic alloy (NFA) containing nm-sized Y2Ti2O7 embedded precipitates in ferritic stainless steel matrix is chosen. The proposed model produces physically appearing simulated SI data sets, which can either be reduced to X-ray dot maps or analyzed via multivariate statistical analysis. Comparison to NFAmore » X-ray maps acquired using three different STEM instruments match the generated simulations quite well, despite the large number of simplifying assumptions used. A figure of merit of electron dose multiplied by X-ray collection solid angle is proposed to compare feature detectability from one data set (simulated or experimental) to another. The proposed method can scope experiments that are feasible under specific analysis conditions on a given microscope. As a result, future applications, such as spallation proton–neutron irradiations, core-shell nanoparticles, or dopants in polycrystalline photovoltaic solar cells, are proposed.« less

  10. SEM technique for imaging and measuring electronic transport in nanocomposites based on electric field induced contrast

    DOE Patents [OSTI]

    Jesse, Stephen [Knoxville, TN; Geohegan, David B. [Knoxville, TN; Guillorn, Michael [Brooktondale, NY

    2009-02-17

    Methods and apparatus are described for SEM imaging and measuring electronic transport in nanocomposites based on electric field induced contrast. A method includes mounting a sample onto a sample holder, the sample including a sample material; wire bonding leads from the sample holder onto the sample; placing the sample holder in a vacuum chamber of a scanning electron microscope; connecting leads from the sample holder to a power source located outside the vacuum chamber; controlling secondary electron emission from the sample by applying a predetermined voltage to the sample through the leads; and generating an image of the secondary electron emission from the sample. An apparatus includes a sample holder for a scanning electron microscope having an electrical interconnect and leads on top of the sample holder electrically connected to the electrical interconnect; a power source and a controller connected to the electrical interconnect for applying voltage to the sample holder to control the secondary electron emission from a sample mounted on the sample holder; and a computer coupled to a secondary electron detector to generate images of the secondary electron emission from the sample.

  11. When will low-contrast features be visible in a STEM X-ray spectrum image?

    SciTech Connect (OSTI)

    Parish, Chad M.

    2015-02-03

    When will a small or low-contrast feature, such as an embedded second-phase particle, be visible in a scanning transmission electron microscopy (STEM) X-ray map? This work illustrates a computationally inexpensive method to simulate X-ray maps and spectrum images (SIs), based upon the equations of X-ray generation and detection. To particularize the general procedure, an example of nanostructured ferritic alloy (NFA) containing nm-sized Y2Ti2O7 embedded precipitates in ferritic stainless steel matrix is chosen. The proposed model produces physically appearing simulated SI data sets, which can either be reduced to X-ray dot maps or analyzed via multivariate statistical analysis. Comparison to NFA X-ray maps acquired using three different STEM instruments match the generated simulations quite well, despite the large number of simplifying assumptions used. A figure of merit of electron dose multiplied by X-ray collection solid angle is proposed to compare feature detectability from one data set (simulated or experimental) to another. The proposed method can scope experiments that are feasible under specific analysis conditions on a given microscope. As a result, future applications, such as spallation proton–neutron irradiations, core-shell nanoparticles, or dopants in polycrystalline photovoltaic solar cells, are proposed.

  12. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L.; Hanrahan, Patrick

    2015-11-10

    A computer displays a graphical user interface on its display. The graphical user interface includes a schema information region and a data visualization region. The schema information region includes a plurality of fields of a multi-dimensional database that includes at least one data hierarchy. The data visualization region includes a columns shelf and a rows shelf. The computer detects user actions to associate one or more first fields with the columns shelf and to associate one or more second fields with the rows shelf. The computer generates a visual table in the data visualization region in accordance with the user actions. The visual table includes one or more panes. Each pane has an x-axis defined based on data for the one or more first fields, and each pane has a y-axis defined based on data for the one or more second fields.

  13. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L.; Hanrahan, Patrick

    2012-03-20

    In response to a user request, a computer generates a graphical user interface on a computer display. A schema information region of the graphical user interface includes multiple operand names, each operand name associated with one or more fields of a multi-dimensional database. A data visualization region of the graphical user interface includes multiple shelves. Upon detecting a user selection of the operand names and a user request to associate each user-selected operand name with a respective shelf in the data visualization region, the computer generates a visual table in the data visualization region in accordance with the associations between the operand names and the corresponding shelves. The visual table includes a plurality of panes, each pane having at least one axis defined based on data for the fields associated with a respective operand name.

  14. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L.; Hanrahan, Patrick

    2011-02-01

    In response to a user request, a computer generates a graphical user interface on a computer display. A schema information region of the graphical user interface includes multiple operand names, each operand name associated with one or more fields of a multi-dimensional database. A data visualization region of the graphical user interface includes multiple shelves. Upon detecting a user selection of the operand names and a user request to associate each user-selected operand name with a respective shelf in the data visualization region, the computer generates a visual table in the data visualization region in accordance with the associations between the operand names and the corresponding shelves. The visual table includes a plurality of panes, each pane having at least one axis defined based on data for the fields associated with a respective operand name.

  15. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L; Hanrahan, Patrick

    2015-03-03

    A computer displays a graphical user interface on its display. The graphical user interface includes a schema information region and a data visualization region. The schema information region includes multiple operand names, each operand corresponding to one or more fields of a multi-dimensional database that includes at least one data hierarchy. The data visualization region includes a columns shelf and a rows shelf. The computer detects user actions to associate one or more first operands with the columns shelf and to associate one or more second operands with the rows shelf. The computer generates a visual table in the data visualization region in accordance with the user actions. The visual table includes one or more panes. Each pane has an x-axis defined based on data for the one or more first operands, and each pane has a y-axis defined based on data for the one or more second operands.

  16. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L; Hanrahan, Patrick

    2014-04-29

    In response to a user request, a computer generates a graphical user interface on a computer display. A schema information region of the graphical user interface includes multiple operand names, each operand name associated with one or more fields of a multi-dimensional database. A data visualization region of the graphical user interface includes multiple shelves. Upon detecting a user selection of the operand names and a user request to associate each user-selected operand name with a respective shelf in the data visualization region, the computer generates a visual table in the data visualization region in accordance with the associations between the operand names and the corresponding shelves. The visual table includes a plurality of panes, each pane having at least one axis defined based on data for the fields associated with a respective operand name.

  17. A 3D Vector/Scalar Visualization and Particle Tracking Package

    Energy Science and Technology Software Center (OSTI)

    1999-08-19

    BOILERMAKER is an interactive visualization system consisting of three components: a visualization component, a particle tracking component, and a communication layer. The software, to date, has been used primarily in the visualization of vector and scalar fields associated with computational fluid dynamics (CFD) models of flue gas flows in industrial boilers and incinerators. Users can interactively request and toggle static vector fields, dynamic streamlines, and flowing vector fields. In addition, the user can interactively placemore » injector nozzles on boiler walls and visualize massed, evaporating sprays emanating from them. Some characteristics of the spray can be adjusted from within the visualization environment including spray shape and particle size. Also included with this release is software that supports 3D menu capabilities, scrollbars, communication and navigation.« less

  18. An Assessment of Remote Visual Testing System Capabilities for the Detection of Service Induced Cracking

    SciTech Connect (OSTI)

    Anderson, Michael T.; Cumblidge, Stephen E.; Doctor, Steven R.

    2005-09-01

    Remote visual testing is typically employed to ascertain the condition of materials in components that are inaccessible for direct examination. In the power and petrochemical industries, remote visual testing is used to assess whether service-related degradation is being manifested that, if left unchecked, may eventually impair the structural reliability of a component. Several codes and standards require that visual examinations be periodically conducted. Many of these inspections must be performed remotely due to harsh environments or design geometries of the subject components. This paper describes the attributes and limitations of remote visual testing, performance demonstration standards for camera systems, typical dimensions for service-induced cracking phenomena, and an assessment of the reliability of remote video camera systems at finding cracks. Because many forms of service-induced cracks have very small crack opening dimensions, the reliability of remote visual testing may not be adequate to ensure component integrity, given the capabilities of current camera systems and application practices.

  19. SU-E-T-56: Brain Metastasis Treatment Plans for Contrast-Enhanced Synchrotron Radiation Therapy

    SciTech Connect (OSTI)

    Obeid, L; Adam, J; Tessier, A; Vautrin, M; Benkebil, M; Sihanath, R

    2014-06-01

    Purpose: Iodine-enhanced radiotherapy is an innovative treatment combining the selective accumulation of an iodinated contrast agent in brain tumors with irradiations using monochromatic medium energy x-rays. The aim of this study is to compare dynamic stereotactic arc-therapy and iodineenhanced SSRT. Methods: Five patients bearing brain metastasis received a standard helical 3D-scan without iodine. A second scan was acquired 13 min after an 80 g iodine infusion. Two SSRT treatment plans (with/without iodine) were performed for each patient using a dedicated Monte Carlo (MC) treatment planning system (TPS) based on the ISOgray TPS. Ten coplanar beams (6×6 cm2, shaped with collimator) were simulated. MC statistical error objective was less than 5% in the 50% isodose. The dynamic arc-therapy plan was achieved on the Iplan Brainlab TPS. The treatment plan validation criteria were fixed such that 100% of the prescribed dose is delivered at the beam isocentre and the 70% isodose contains the whole target volume. The comparison elements were the 70% isodose volume, the average and maximum doses delivered to organs at risk (OAR): brainstem, optical nerves, chiasma, eyes, skull bone and healthy brain parenchyma. Results: The stereotactic dynamic arc-therapy remains the best technique in terms of dose conformation. Iodine-enhanced SSRT presents similar performances to dynamic arc-therapy with increased brainstem and brain parenchyma sparing. One disadvantage of SSRT is the high dose to the skull bone. Iodine accumulation in metastasis may increase the dose by 20–30%, allowing a normal tissue sparing effect at constant prescribed dose. Treatment without any iodine enhancement (medium-energy stereotactic radiotherapy) is not relevant with degraded HDVs (brain, parenchyma and skull bone) comparing to stereotactic dynamic arc-therapy. Conclusion: Iodine-enhanced SSRT exhibits a good potential for brain metastasis treatment regarding the dose distribution and OAR criteria.

  20. Contrasting impacts of localised versus catastrophic oil spills in coastal wetlands

    SciTech Connect (OSTI)

    Burns, K.A.; Codi, S.

    1996-12-31

    A localised oil spill was observed on the wetland marshes bordering a tidal creek near Cairns, Queensland in January 1994. Pollution and conservation issues are of paramount public concern in this region which boarders World Heritage Areas of coral reefs and coastal habitats. Local residents observed oil being dumped from a truck which was contracted to of oil the surface of the roads in the contiguous sugar cane farm for dust control. During this incident several truckloads of mixed waste oil were dumped onto a short section of road and into the wetlands. The oil contaminated a band of marsh 15-30 m wide along approximately 200 m of road. Impacted marsh included Melaleuca forest on the high side of the road and intertidal mangroves on the seaward side. The Queensland Department of Environment (QDE) initiated an impact assessment and directed the trucking company to clean up impacted areas. The extent of damage to wetlands from oil spills is related to the amount and type of oil spilled and the sensitivity of the habitats oiled. QDE asked the Australian Institute of Marine Sciences to assist with their study on the fate of the oil in this localised spill. The initial levels of petroleum hydrocarbons in surface sediments reached 17% of the dry weight in heavily impacted areas. Thus levels were similar to those reached after the catastrophic oil spill in Panama. Clean up efforts and natural dissipation processes reduced sediment hydrocarbon loads to nonacutely toxic levels in only 1.5 years in the intertidal mangroves. High levels remain in the Melaleuca sediments. We used internal molecular markers to detail hydrocarbon dissipation vs degradation. This study provides a contrast between impacts of localised versus catastrophic oil spills in deep mud coastal habitats.

  1. Facies distributions within contrasting structural components of a rift lake: Lake Tanganyika, Africa

    SciTech Connect (OSTI)

    Soreghan, M.J.; Cohen, A.S. )

    1991-03-01

    Lake Tanganyika is the most widely cited modern analog for interpreting ancient rift lakes; thus, understanding controls on its facies distribution is critical for refining stratigraphic models for rifts. Four recurrent margin types occur along the alternating half-graben structure of the lake: rift axes, platforms, escarpments, and accommodation zones. Data from study sites in the northern part of the lake suggest that predictable facies differences exist between these structural margin types. The rift axis site comprises a low-gradient, clastic (wave/current)-dominated deltaic system, with strong facies asymmetry and minor carbonate accumulations on raised benches. The platform margin site comprises a series of structurally controlled benches over which long, continuous facies tracts occur. Carbonate sands, muds, and shell gravel dominate; clastics are limited to moderate-sized silty deltas and long, narrow shoreface sands. The escarpment margin site is a steep-gradient system along which small ({lt}1 km{sup 2}) fan deltas alternate with cemented talus. The accommodation zone margin sites are also dominated by rugged structural relief, generally small fan deltas, and semicontinuous shoreface sand belts ({gt}5 km) onshore and poorly sorted silts offshore. TOC from fine-grained samples reflects the contrast in margin types. TOC values for the platform and rift axis range from 0.4 - 2.1 wt. % (avg. 1.3%), whereas accommodation zone and escarpment margin values range from 0.5-5.5% (avg. 3.0%). Acid insoluble sulfur shows a similar trend. Although all data are significantly correlated with depth, the relative area of the lake margin above and below the oxicline is directly controlled by the structural style of the lake margin.

  2. Reverse-Contrast Imaging and Targeted Radiation Therapy of Advanced Pancreatic Cancer Models

    SciTech Connect (OSTI)

    Thorek, Daniel L.J.; Kramer, Robin M.; Chen, Qing; Jeong, Jeho; Lupu, Mihaela E.; Lee, Alycia M.; Moynahan, Mary E.; Lowery, Maeve; Ulmert, David; Zanzonico, Pat; Deasy, Joseph O.; Humm, John L.; Russell, James

    2015-10-01

    Purpose: To evaluate the feasibility of delivering experimental radiation therapy to tumors in the mouse pancreas. Imaging and treatment were performed using combined CT (computed tomography)/orthovoltage treatment with a rotating gantry. Methods and Materials: After intraperitoneal administration of radiopaque iodinated contrast, abdominal organ delineation was performed by x-ray CT. With this technique we delineated the pancreas and both orthotopic xenografts and genetically engineered disease. Computed tomographic imaging was validated by comparison with magnetic resonance imaging. Therapeutic radiation was delivered via a 1-cm diameter field. Selective x-ray radiation therapy of the noninvasively defined orthotopic mass was confirmed using γH2AX staining. Mice could tolerate a dose of 15 Gy when the field was centered on the pancreas tail, and treatment was delivered as a continuous 360° arc. This strategy was then used for radiation therapy planning for selective delivery of therapeutic x-ray radiation therapy to orthotopic tumors. Results: Tumor growth delay after 15 Gy was monitored, using CT and ultrasound to determine the tumor volume at various times after treatment. Our strategy enables the use of clinical radiation oncology approaches to treat experimental tumors in the pancreas of small animals for the first time. We demonstrate that delivery of 15 Gy from a rotating gantry minimizes background healthy tissue damage and significantly retards tumor growth. Conclusions: This advance permits evaluation of radiation planning and dosing parameters. Accurate noninvasive longitudinal imaging and monitoring of tumor progression and therapeutic response in preclinical models is now possible and can be expected to more effectively evaluate pancreatic cancer disease and therapeutic response.

  3. Different understanding: science through the eyes of visual thinkers

    SciTech Connect (OSTI)

    Sesko, S.C.; Marchant, M.

    1997-09-11

    The objective of this emergent study was to follow the cognitive and creative processes demonstrated by five art student participants as they integrated a developing knowledge of big science, as practiced at the Department of Energy`s Lawrence Livermore National Laboratory, into a personal and idiosyncratic visual, graphical, or multimedia product. The non-scientist participants involved in this process attended design classes sponsored by the Laboratory at the Art Center College of Design in California. The learning experience itself, and how the students arrived at their product, were the focus of the class and the research. The study was emergent in that we found no applicable literature on the use of art to portray a cognitive understanding of science. This lack of literature led us to the foundation literature on creativity and to the corpus of literature on public understanding of science. We believe that this study contributes to the literature on science education, art education, cognitive change, and public understanding of science. 20 refs., 11 figs.

  4. Visualization for Hyper-Heuristics: Back-End Processing

    SciTech Connect (OSTI)

    Simon, Luke

    2015-03-01

    Modern society is faced with increasingly complex problems, many of which can be formulated as generate-and-test optimization problems. Yet, general-purpose optimization algorithms may sometimes require too much computational time. In these instances, hyperheuristics may be used. Hyper-heuristics automate the design of algorithms to create a custom algorithm for a particular scenario, finding the solution significantly faster than its predecessor. However, it may be difficult to understand exactly how a design was derived and why it should be trusted. This project aims to address these issues by creating an easy-to-use graphical user interface (GUI) for hyper-heuristics and an easy-to-understand scientific visualization for the produced solutions. To support the development of this GUI, my portion of the research involved developing algorithms that would allow for parsing of the data produced by the hyper-heuristics. This data would then be sent to the front-end, where it would be displayed to the end user.

  5. Visualizing Safeguards: Software for Conceptualizing and Communicating Safeguards Data

    SciTech Connect (OSTI)

    Gallucci, N.

    2015-07-12

    The nuclear programs of states are complex and varied, comprising a wide range of fuel cycles and facilities. Also varied are the types and terms of states’ safeguards agreements with the IAEA, each placing different limits on the inspectorate’s access to these facilities. Such nuances make it difficult to draw policy significance from the ground-level nuclear activities of states, or to attribute ground-level outcomes to the implementation of specific policies or initiatives. While acquiring a firm understanding of these relationships is critical to evaluating and formulating effective policy, doing so requires collecting and synthesizing large bodies of information. Maintaining a comprehensive working knowledge of the facilities comprising even a single state’s nuclear program poses a challenge, yet marrying this information with relevant safeguards and verification information is more challenging still. To facilitate this task, Brookhaven National Laboratory has developed a means of capturing the development, operation, and safeguards history of all the facilities comprising a state’s nuclear program in a single graphic. The resulting visualization offers a useful reference tool to policymakers and analysts alike, providing a chronology of states’ nuclear development and an easily digestible history of verification activities across their fuel cycles.

  6. Energy-loss- and thickness-dependent contrast in atomic-scale electron energy-loss spectroscopy

    SciTech Connect (OSTI)

    Tan, Haiyan; Zhu, Ye; Dwyer, Christian; Xin, Huolin L.

    2014-12-31

    Atomic-scale elemental maps of materials acquired by core-loss inelastic electron scattering often exhibit an undesirable sensitivity to the unavoidable elastic scattering, making the maps counter-intuitive to interpret. Here, we present a systematic study that scrutinizes the energy-loss and sample-thickness dependence of atomic-scale elemental maps acquired using 100 keV incident electrons in a scanning transmission electron microscope. For single-crystal silicon, the balance between elastic and inelastic scattering means that maps generated from the near-threshold Si-L signal (energy loss of 99 eV) show no discernible contrast for a thickness of 0.5? (? is the electron mean-free path, here approximately 110 nm). At greater thicknesses we observe a counter-intuitive negative contrast. Only at much higher energy losses is an intuitive positive contrast gradually restored. Our quantitative analysis shows that the energy-loss at which a positive contrast is restored depends linearly on the sample thickness. This behavior is in very good agreement with our double-channeling inelastic scattering calculations. We test a recently-proposed experimental method to correct the core-loss inelastic scattering and restore an intuitive positive chemical contrast. The method is demonstrated to be reliable over a large range of energy losses and sample thicknesses. The corrected contrast for near-threshold maps is demonstrated to be (desirably) inversely proportional to sample thickness. As a result, implications for the interpretation of atomic-scale elemental maps are discussed.

  7. Energy-loss- and thickness-dependent contrast in atomic-scale electron energy-loss spectroscopy

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Tan, Haiyan; Zhu, Ye; Dwyer, Christian; Xin, Huolin L.

    2014-12-31

    Atomic-scale elemental maps of materials acquired by core-loss inelastic electron scattering often exhibit an undesirable sensitivity to the unavoidable elastic scattering, making the maps counter-intuitive to interpret. Here, we present a systematic study that scrutinizes the energy-loss and sample-thickness dependence of atomic-scale elemental maps acquired using 100 keV incident electrons in a scanning transmission electron microscope. For single-crystal silicon, the balance between elastic and inelastic scattering means that maps generated from the near-threshold Si-L signal (energy loss of 99 eV) show no discernible contrast for a thickness of 0.5λ (λ is the electron mean-free path, here approximately 110 nm). Atmore » greater thicknesses we observe a counter-intuitive “negative” contrast. Only at much higher energy losses is an intuitive “positive” contrast gradually restored. Our quantitative analysis shows that the energy-loss at which a positive contrast is restored depends linearly on the sample thickness. This behavior is in very good agreement with our double-channeling inelastic scattering calculations. We test a recently-proposed experimental method to correct the core-loss inelastic scattering and restore an intuitive “positive” chemical contrast. The method is demonstrated to be reliable over a large range of energy losses and sample thicknesses. The corrected contrast for near-threshold maps is demonstrated to be (desirably) inversely proportional to sample thickness. As a result, implications for the interpretation of atomic-scale elemental maps are discussed.« less

  8. A grating-based single-shot x-ray phase contrast and diffraction method for in vivo imaging

    SciTech Connect (OSTI)

    Bennett, Eric E.; Kopace, Rael; Stein, Ashley F.; Wen Han

    2010-11-15

    Purpose: The purpose of this study is to develop a single-shot version of the grating-based phase contrast x-ray imaging method and demonstrate its capability of in vivo animal imaging. Here, the authors describe the principle and experimental results. They show the source of artifacts in the phase contrast signal and optimal designs that minimize them. They also discuss its current limitations and ways to overcome them. Methods: A single lead grid was inserted midway between an x-ray tube and an x-ray camera in the planar radiography setting. The grid acted as a transmission grating and cast periodic dark fringes on the camera. The camera had sufficient spatial resolution to resolve the fringes. Refraction and diffraction in the imaged object manifested as position shifts and amplitude attenuation of the fringes, respectively. In order to quantify these changes precisely without imposing a fixed geometric relationship between the camera pixel array and the fringes, a spatial harmonic method in the Fourier domain was developed. The level of the differential phase (refraction) contrast as a function of hardware specifications and device geometry was derived and used to guide the optimal placement of the grid and object. Both ex vivo and in vivo images of rodent extremities were collected to demonstrate the capability of the method. The exposure time using a 50 W tube was 28 s. Results: Differential phase contrast images of glass beads acquired at various grid and object positions confirmed theoretical predictions of how phase contrast and extraneous artifacts vary with the device geometry. In anesthetized rats, a single exposure yielded artifact-free images of absorption, differential phase contrast, and diffraction. Differential phase contrast was strongest at bone-soft tissue interfaces, while diffraction was strongest in bone. Conclusions: The spatial harmonic method allowed us to obtain absorption, differential phase contrast, and diffraction images, all from a single raw image and is feasible in live animals. Because the sensitivity of the method scales with the density of the gratings, custom microfabricated gratings should be superior to off-the-shelf lead grids.

  9. Experiments at Scale with In-Situ Visualization Using ParaView/Catalyst in RAGE

    SciTech Connect (OSTI)

    Kares, Robert John

    2014-10-31

    In this paper I describe some numerical experiments performed using the ParaView/Catalyst in-situ visualization infrastructure deployed in the Los Alamos RAGE radiation-hydrodynamics code to produce images from a running large scale 3D ICF simulation on the Cielo supercomputer at Los Alamos. The detailed procedures for the creation of the visualizations using ParaView/Catalyst are discussed and several images sequences from the ICF simulation problem produced with the in-situ method are presented. My impressions and conclusions concerning the use of the in-situ visualization method in RAGE are discussed.

  10. Webinar March 14: DetecTape - A Localized Visual Detector for Hydrogen

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Leaks | Department of Energy March 14: DetecTape - A Localized Visual Detector for Hydrogen Leaks Webinar March 14: DetecTape - A Localized Visual Detector for Hydrogen Leaks March 7, 2016 - 11:35am Addthis The Energy Department will present a live webinar titled "DetecTape - A Localized Visual Detector for Hydrogen Leaks" on Monday, March 14, from 12 to 1 p.m. Eastern Daylight Time. DetecTape is a color-changing, self-fusing silicone tape designed to detect hydrogen gas (H2) leaks

  11. Selection of higher eigenmode amplitude based on dissipated power and virial contrast in bimodal atomic force microscopy

    SciTech Connect (OSTI)

    Diaz, Alfredo J.; Eslami, Babak; Lpez-Guerra, Enrique A.; Solares, Santiago D.

    2014-09-14

    This paper explores the effect of the amplitude ratio of the higher to the fundamental eigenmode in bimodal atomic force microscopy (AFM) on the phase contrast and the dissipated power contrast of the higher eigenmode. We explore the optimization of the amplitude ratio in order to maximize the type of contrast that is most relevant to the particular study. Specifically, we show that the trends in the contrast range behave differently for different quantities, especially the dissipated power and the phase, with the former being more meaningful than the latter (a similar analysis can be carried out using the virial, for which we also provide a brief example). Our work is based on numerical simulations using two different conservative-dissipative tip-sample models, including the standard linear solid and the combination of a dissipation coefficient with a conservative model, as well as experimental images of thin film Nafion{sup } proton exchange polymers. We focus on the original bimodal AFM method, where the higher eigenmode is driven with constant amplitude and frequency (i.e., in open loop).

  12. Technical Note: Measuring contrast- and noise-dependent spatial resolution of an iterative reconstruction method in CT using ensemble averaging

    SciTech Connect (OSTI)

    Yu, Lifeng Vrieze, Thomas J.; Leng, Shuai; Fletcher, Joel G.; McCollough, Cynthia H.

    2015-05-15

    Purpose: The spatial resolution of iterative reconstruction (IR) in computed tomography (CT) is contrast- and noise-dependent because of the nonlinear regularization. Due to the severe noise contamination, it is challenging to perform precise spatial-resolution measurements at very low-contrast levels. The purpose of this study was to measure the spatial resolution of a commercially available IR method using ensemble-averaged images acquired from repeated scans. Methods: A low-contrast phantom containing three rods (7, 14, and 21 HU below background) was scanned on a 128-slice CT scanner at three dose levels (CTDI{sub vol} = 16, 8, and 4 mGy). Images were reconstructed using two filtered-backprojection (FBP) kernels (B40 and B20) and a commercial IR method (sinogram affirmed iterative reconstruction, SAFIRE, Siemens Healthcare) with two strength settings (I40-3 and I40-5). The same scan was repeated 100 times at each dose level. The modulation transfer function (MTF) was calculated based on the edge profile measured on the ensemble-averaged images. Results: The spatial resolution of the two FBP kernels, B40 and B20, remained relatively constant across contrast and dose levels. However, the spatial resolution of the two IR kernels degraded relative to FBP as contrast or dose level decreased. For a given dose level at 16 mGy, the MTF{sub 50%} value normalized to the B40 kernel decreased from 98.4% at 21 HU to 88.5% at 7 HU for I40-3 and from 97.6% to 82.1% for I40-5. At 21 HU, the relative MTF{sub 50%} value decreased from 98.4% at 16 mGy to 90.7% at 4 mGy for I40-3 and from 97.6% to 85.6% for I40-5. Conclusions: A simple technique using ensemble averaging from repeated CT scans can be used to measure the spatial resolution of IR techniques in CT at very low contrast levels. The evaluated IR method degraded the spatial resolution at low contrast and high noise levels.

  13. Pattern of Retained Contrast on Immediate Postprocedure Computed tomography (CT) After Particle Embolization of Liver Tumors Predicts Subsequent Treatment Response

    SciTech Connect (OSTI)

    Wang Xiaodong Erinjeri, Joseph P.; Jia Xiaoyu Gonen, Mithat; Brown, Karen T. Sofocleous, Constantinos T. Getrajdman, George I. Brody, Lynn A. Thornton, Raymond H. Maybody, Majid Covey, Ann M. Siegelbaum, Robert H. Alago, William Solomon, Stephen B.

    2013-08-01

    PurposeTo determine if the pattern of retained contrast on immediate postprocedure computed tomography (CT) after particle embolization of hepatic tumors predicts modified Response Evaluation Criteria in Solid Tumors (mRECIST) response.Materials and MethodsThis study was approved by the Institutional Review Board with a waiver of authorization. One hundred four liver tumors were embolized with spherical embolic agents (Embospheres, Bead Block, LC Bead) and polyvinyl alcohol. Noncontrast CT was performed immediately after embolization to assess contrast retention in the targeted tumors, and treatment response was assessed by mRECIST criteria on follow-up CT (average time 9.0 {+-} 7.7 weeks after embolization). Tumor contrast retention (TCR) was determined based on change in Hounsfield units (HUs) of the index tumors between the preprocedure and immediate postprocedure scans; vascular contrast retention (VCR) was rated; and defects in contrast retention (DCR) were also documented. The morphology of residual enhancing tumor on follow-up CT was described as partial, circumferential, or total. Association between TCR variables and tumor response were assessed using multivariate logistic regression.ResultsOf 104 hepatic tumors, 51 (49 %) tumors had complete response (CR) by mRECIST criteria; 23 (22.1 %) had partial response (PR); 21 (20.2 %) had stable disease (SD); and 9 (8.7 %) had progressive disease (PD). By multivariate analysis, TCR, VCR, and tumor size are independent predictors of CR (p = 0.02, 0.05, and 0.005 respectively). In 75 tumors, DCR was found to be an independent predictor of failure to achieve complete response (p < 0.0001) by imaging criteria.ConclusionTCR, VCR, and DCR on immediate posttreatment CT are independent predictors of CR by mRECIST criteria.

  14. Performance, power, and energy of in-situ and post-processing visualization

    SciTech Connect (OSTI)

    Adhinarayanan, Vignesh

    2015-10-05

    The goal of this project was to "study the performance, power, and energy trade-offs among traditional post-processing, modern post-processing, and in-situ visualization pipelines."

  15. Visualizations, Screen Shots, and Data Input Files from VisIT

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    VisIt is a free interactive parallel visualization and graphical analysis tool for viewing scientific data on Unix and PC platforms. Users can quickly generate visualizations from their data, animate them through time, manipulate them, and save the resulting images for presentations. VisIt contains a rich set of visualization features so that you can view your data in a variety of ways. It can be used to visualize scalar and vector fields defined on two- and three-dimensional (2D and 3D) structured and unstructured meshes. VisIt was designed to handle very large data set sizes in the terascale range and yet can also handle small data sets in the kilobyte range. The VisIT website provides a gallery of vizualizations, another set of screen shots, and allows downloads of data files for input and source codes and executables for the VisIT software suite.

  16. vtkPNetCDFPOPReader: a new C++ class for Visualization Toolkit (VTK)

    Energy Science and Technology Software Center (OSTI)

    2011-08-03

    VTK is a software library used for scientific visualization tasks. My specific contribution is a new class that improves the I/O performance when reading certain input files.

  17. DetecTape – A Localized Visual Detector for Hydrogen Leaks Webinar

    Broader source: Energy.gov [DOE]

    Access the recording and download the presentation slides from the Fuel Cell Technologies Office webinar "DetecTape – A Localized Visual Detector for Hydrogen Leaks" held on March 14, 2016.

  18. Building Technologies Program: Tax Deduction Qualified Software- VisualDOE version 4.1 build 0002

    Broader source: Energy.gov [DOE]

    Provides required documentation that VisualDOE version 4.1 build 0002 meets Internal Revenue Code §179D, Notice 2006-52, dated June 2, 2006, for calculating commercial building energy and power cost savings.

  19. A Five-dimensional Visualization of the Pressure-induced Phase...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    A Five-dimensional Visualization of the Pressure-induced Phase Transition in BiNiO3 Friday, February 28, 2014 Figure 1. Illustration of the nanoscopic study of a BiNiO3 particle...

  20. Corridor One: An Integrated Distance Visualization Environment for SSI and ASCI Applications

    SciTech Connect (OSTI)

    Rick Stevens; Jason Leigh

    2002-07-14

    Scenarios describe realistic uses of DVC/Distance technologies in several years. Four scenarios are described: Distributed Decision Making; Remote Interactive Computing; Remote Visualization: (a) Remote Immersive Visualization and (b) Remote Scientific Visualization; Remote Virtual Prototyping. Scenarios serve as drivers for the road maps and enable us to check that the functionality and technology in the road maps match application needs. There are four major DVC/Distance technology areas we cover: Networking and QoS; Remote Computing; Remote Visualization; Remote Data. Each ??road map? consists of two parts, a ??functionality? matrix (what can be done) and a ??technology? matrix (underlying technology). That is, functionality matrices show the desired operational characteristics, while technology matrices show the underlying technology needed. In practice, there isn??t always a clean break between ??functionality? and ??technology,? but it still seems useful to try and separate things this way.

  1. Webinar: DetecTape – A Localized Visual Detector for Hydrogen Leaks

    Broader source: Energy.gov [DOE]

    The Energy Department will present a live webinar titled "DetecTape – A Localized Visual Detector for Hydrogen Leaks" on Monday, March 14, from 12 to 1 p.m. Eastern Daylight Time.

  2. Modification to the Monte Carlo N-Particle (MCNP) Visual Editor...

    Office of Scientific and Technical Information (OSTI)

    of the MCNP Visual Editor to allow it to read in both 2D and 3D Computer Aided Design (CAD) files, allowing the user to electronically generate a valid MCNP input geometry. ...

  3. RVA. 3-D Visualization and Analysis Software to Support Management of Oil and Gas Resources

    SciTech Connect (OSTI)

    Keefer, Donald A.; Shaffer, Eric G.; Storsved, Brynne; Vanmoer, Mark; Angrave, Lawrence; Damico, James R.; Grigsby, Nathan

    2015-12-01

    A free software application, RVA, has been developed as a plugin to the US DOE-funded ParaView visualization package, to provide support in the visualization and analysis of complex reservoirs being managed using multi-fluid EOR techniques. RVA, for Reservoir Visualization and Analysis, was developed as an open-source plugin to the 64 bit Windows version of ParaView 3.14. RVA was developed at the University of Illinois at Urbana-Champaign, with contributions from the Illinois State Geological Survey, Department of Computer Science and National Center for Supercomputing Applications. RVA was designed to utilize and enhance the state-of-the-art visualization capabilities within ParaView, readily allowing joint visualization of geologic framework and reservoir fluid simulation model results. Particular emphasis was placed on enabling visualization and analysis of simulation results highlighting multiple fluid phases, multiple properties for each fluid phase (including flow lines), multiple geologic models and multiple time steps. Additional advanced functionality was provided through the development of custom code to implement data mining capabilities. The built-in functionality of ParaView provides the capacity to process and visualize data sets ranging from small models on local desktop systems to extremely large models created and stored on remote supercomputers. The RVA plugin that we developed and the associated User Manual provide improved functionality through new software tools, and instruction in the use of ParaView-RVA, targeted to petroleum engineers and geologists in industry and research. The RVA web site (http://rva.cs.illinois.edu) provides an overview of functions, and the development web site (https://github.com/shaffer1/RVA) provides ready access to the source code, compiled binaries, user manual, and a suite of demonstration data sets. Key functionality has been included to support a range of reservoirs visualization and analysis needs, including: sophisticated connectivity analysis, cross sections through simulation results between selected wells, simplified volumetric calculations, global vertical exaggeration adjustments, ingestion of UTChem simulation results, ingestion of Isatis geostatistical framework models, interrogation of joint geologic and reservoir modeling results, joint visualization and analysis of well history files, location-targeted visualization, advanced correlation analysis, visualization of flow paths, and creation of static images and animations highlighting targeted reservoir features.

  4. Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene

    Office of Scientific and Technical Information (OSTI)

    Expression Data (Conference) | SciTech Connect Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data Citation Details In-Document Search Title: Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data Three-dimensional gene expression PointCloud data generated by the Berkeley Drosophila Transcription Network Project (BDTNP) provides quantitative information about the spatial and temporal expression of genes in early Drosophila

  5. Dynamic Structural Response and Deformations of Monolayer MoS 2 Visualized

    Office of Scientific and Technical Information (OSTI)

    by Femtosecond Electron Diffraction (Journal Article) | SciTech Connect SciTech Connect Search Results Journal Article: Dynamic Structural Response and Deformations of Monolayer MoS 2 Visualized by Femtosecond Electron Diffraction Citation Details In-Document Search Title: Dynamic Structural Response and Deformations of Monolayer MoS 2 Visualized by Femtosecond Electron Diffraction Authors: Mannebach, Ehren M. ; Li, Renkai ; Duerloo, Karel-Alexander ; Nyby, Clara ; Zalden, Peter ; Vecchione,

  6. Topology-based Visualization and Analysis of High-dimensional Data and

    Office of Scientific and Technical Information (OSTI)

    Time-varying Data at the Extreme Scale (Conference) | SciTech Connect Topology-based Visualization and Analysis of High-dimensional Data and Time-varying Data at the Extreme Scale Citation Details In-Document Search Title: Topology-based Visualization and Analysis of High-dimensional Data and Time-varying Data at the Extreme Scale Authors: Weber, Gunther H. ; Morozov, Dmitriy ; Beketayev, Kenes ; Bell, John ; Bremer, Peer-Timo ; Day, Marc ; Hamann, Bernd ; Heine, Christian ; Haranczyk,

  7. Volume visualization of multiple alignment of large genomicDNA (Book) |

    Office of Scientific and Technical Information (OSTI)

    SciTech Connect Book: Volume visualization of multiple alignment of large genomicDNA Citation Details In-Document Search Title: Volume visualization of multiple alignment of large genomicDNA Genomes of hundreds of species have been sequenced to date, and many more are being sequenced. As more and more sequence data sets become available, and as the challenge of comparing these massive ''billion basepair DNA sequences'' becomes substantial, so does the need for more powerful tools supporting

  8. Visualization at Supercomputing Centers: The Tale of Little Big Iron and the Three Skinny Guys

    SciTech Connect (OSTI)

    Bethel, E. Wes; van Rosendale, John; Southard, Dale; Gaither, Kelly; Childs, Hank; Brugger, Eric; Ahern, Sean

    2010-12-01

    Supercomputing Centers (SC's) are unique resources that aim to enable scientific knowledge discovery through the use of large computational resources, the Big Iron. Design, acquisition, installation, and management of the Big Iron are activities that are carefully planned and monitored. Since these Big Iron systems produce a tsunami of data, it is natural to co-locate visualization and analysis infrastructure as part of the same facility. This infrastructure consists of hardware (Little Iron) and staff (Skinny Guys). Our collective experience suggests that design, acquisition, installation, and management of the Little Iron and Skinny Guys does not receive the same level of treatment as that of the Big Iron. The main focus of this article is to explore different aspects of planning, designing, fielding, and maintaining the visualization and analysis infrastructure at supercomputing centers. Some of the questions we explore in this article include:"How should the Little Iron be sized to adequately support visualization and analysis of data coming off the Big Iron?" What sort of capabilities does it need to have?" Related questions concern the size of visualization support staff:"How big should a visualization program be (number of persons) and what should the staff do?" and"How much of the visualization should be provided as a support service, and how much should applications scientists be expected to do on their own?"

  9. Generalized Framework and Algorithms for Illustrative Visualization of Time-Varying Data on Unstructured Meshes

    SciTech Connect (OSTI)

    Alexander S. Rattner; Donna Post Guillen; Alark Joshi

    2012-12-01

    Photo- and physically-realistic techniques are often insufficient for visualization of simulation results, especially for 3D and time-varying datasets. Substantial research efforts have been dedicated to the development of non-photorealistic and illustration-inspired visualization techniques for compact and intuitive presentation of such complex datasets. While these efforts have yielded valuable visualization results, a great deal of work has been reproduced in studies as individual research groups often develop purpose-built platforms. Additionally, interoperability between illustrative visualization software is limited due to specialized processing and rendering architectures employed in different studies. In this investigation, a generalized framework for illustrative visualization is proposed, and implemented in marmotViz, a ParaView plugin, enabling its use on variety of computing platforms with various data file formats and mesh geometries. Detailed descriptions of the region-of-interest identification and feature-tracking algorithms incorporated into this tool are provided. Additionally, implementations of multiple illustrative effect algorithms are presented to demonstrate the use and flexibility of this framework. By providing a framework and useful underlying functionality, the marmotViz tool can act as a springboard for future research in the field of illustrative visualization.

  10. Collaborative Visualization for Large-Scale Accelerator Electromagnetic Modeling (Final Report)

    SciTech Connect (OSTI)

    William J. Schroeder

    2011-11-13

    This report contains the comprehensive summary of the work performed on the SBIR Phase II, Collaborative Visualization for Large-Scale Accelerator Electromagnetic Modeling at Kitware Inc. in collaboration with Stanford Linear Accelerator Center (SLAC). The goal of the work was to develop collaborative visualization tools for large-scale data as illustrated in the figure below. The solutions we proposed address the typical problems faced by geographicallyand organizationally-separated research and engineering teams, who produce large data (either through simulation or experimental measurement) and wish to work together to analyze and understand their data. Because the data is large, we expect that it cannot be easily transported to each team member's work site, and that the visualization server must reside near the data. Further, we also expect that each work site has heterogeneous resources: some with large computing clients, tiled (or large) displays and high bandwidth; others sites as simple as a team member on a laptop computer. Our solution is based on the open-source, widely used ParaView large-data visualization application. We extended this tool to support multiple collaborative clients who may locally visualize data, and then periodically rejoin and synchronize with the group to discuss their findings. Options for managing session control, adding annotation, and defining the visualization pipeline, among others, were incorporated. We also developed and deployed a Web visualization framework based on ParaView that enables the Web browser to act as a participating client in a collaborative session. The ParaView Web Visualization framework leverages various Web technologies including WebGL, JavaScript, Java and Flash to enable interactive 3D visualization over the web using ParaView as the visualization server. We steered the development of this technology by teaming with the SLAC National Accelerator Laboratory. SLAC has a computationally-intensive problem important to the nations scientific progress as described shortly. Further, SLAC researchers routinely generate massive amounts of data, and frequently collaborate with other researchers located around the world. Thus SLAC is an ideal teammate through which to develop, test and deploy this technology. The nature of the datasets generated by simulations performed at SLAC presented unique visualization challenges especially when dealing with higher-order elements that were addressed during this Phase II. During this Phase II, we have developed a strong platform for collaborative visualization based on ParaView. We have developed and deployed a ParaView Web Visualization framework that can be used for effective collaboration over the Web. Collaborating and visualizing over the Web presents the community with unique opportunities for sharing and accessing visualization and HPC resources that hitherto with either inaccessible or difficult to use. The technology we developed in here will alleviate both these issues as it becomes widely deployed and adopted.

  11. Scanning EM of non-heavy metal stained biosamples: Large-field of view, high contrast and highly efficient immunolabeling

    SciTech Connect (OSTI)

    Kuipers, Jeroen; Boer, Pascal de; Giepmans, Ben N.G.

    2015-10-01

    Scanning electron microscopy (SEM) is increasing its application in life sciences for electron density measurements of ultrathin sections. These are traditionally analyzed with transmission electron microscopy (TEM); by most labs, SEM analysis still is associated with surface imaging only. Here we report several advantages of SEM for thin sections over TEM, both for structural inspection, as well as analyzing immuno-targeted labels such as quantum dots (QDs) and gold, where we find that QD-labeling is ten times more efficient than gold-labeling. Furthermore, we find that omitting post-staining with uranyl and lead leads to QDs readily detectable over the ultrastructure, but under these conditions ultrastructural contrast was even almost invisible in TEM examination. Importantly, imaging in SEM with STEM detection leads to both outstanding QDs and ultrastructural contrast. STEM imaging is superior over back-scattered electron imaging of these non-contrasted samples, whereas secondary electron detection cannot be used at all. We conclude that examination of ultrathin sections by SEM, which may be immunolabeled with QDs, will allow rapid and straightforward analysis of large fields with more efficient labeling than can be achieved with immunogold. The large fields of view routinely achieved with SEM, but not with TEM, allows straightforward raw data sharing using virtual microscopy, also known as nanotomy when this concerns EM data in the life sciences. - Highlights: • High resolution and large fields of view via nanotomy or virtual microscopy. • Highly relevant for EM‐datasets where information density is high. • Sample preparation with low contrast good for STEM, not TEM. • Quantum dots now stand out in STEM‐based detection. • 10 Times more efficient labeling with quantum dots compared to gold.

  12. Visualization at Supercomputing Centers: The Tale of Little Big Iron and the Three Skinny Guys

    SciTech Connect (OSTI)

    Bethel, E Wes; Brugger, Eric

    2011-01-01

    Supercomputing centers are unique resources that aim to enable scientific knowledge discovery by employing large computational resources - the 'Big Iron.' Design, acquisition, installation, and management of the Big Iron are carefully planned and monitored. Because these Big Iron systems produce a tsunami of data, it's natural to colocate the visualization and analysis infrastructure. This infrastructure consists of hardware (Little Iron) and staff (Skinny Guys). Our collective experience suggests that design, acquisition, installation, and management of the Little Iron and Skinny Guys doesn't receive the same level of treatment as that of the Big Iron. This article explores the following questions about the Little Iron: How should we size the Little Iron to adequately support visualization and analysis of data coming off the Big Iron? What sort of capabilities must it have? Related questions concern the size of visualization support staff: How big should a visualization program be - that is, how many Skinny Guys should it have? What should the staff do? How much of the visualization should be provided as a support service, and how much should applications scientists be expected to do on their own?

  13. COLLABORATIVE RESEARCH: Parallel Analysis Tools and New Visualization Techniques for Ultra-Large Climate Data Set

    SciTech Connect (OSTI)

    middleton, Don; Haley, Mary

    2014-12-10

    ParVis was a project funded under LAB 10-05: “Earth System Modeling: Advanced Scientific Visualization of Ultra-Large Climate Data Sets”. Argonne was the lead lab with partners at PNNL, SNL, NCAR and UC-Davis. This report covers progress from January 1st, 2013 through Dec 1st, 2014. Two previous reports covered the period from Summer, 2010, through September 2011 and October 2011 through December 2012, respectively. While the project was originally planned to end on April 30, 2013, personnel and priority changes allowed many of the institutions to continue work through FY14 using existing funds. A primary focus of ParVis was introducing parallelism to climate model analysis to greatly reduce the time-to-visualization for ultra-large climate data sets. Work in the first two years was conducted on two tracks with different time horizons: one track to provide immediate help to climate scientists already struggling to apply their analysis to existing large data sets and another focused on building a new data-parallel library and tool for climate analysis and visualization that will give the field a platform for performing analysis and visualization on ultra-large datasets for the foreseeable future. In the final 2 years of the project, we focused mostly on the new data-parallel library and associated tools for climate analysis and visualization.

  14. Immersive Visualization for Materials Science Data Analysis using the Oculus Rift

    SciTech Connect (OSTI)

    Drouhard, Margaret MEG G; Steed, Chad A; Hahn, Steven E; Proffen, Thomas E; Daniel, Jamison R; Matheson, Michael A

    2015-01-01

    In this paper, we propose strategies and objectives for immersive data visualization with applications in materials science using the Oculus Rift virtual reality headset. We provide background on currently available analysis tools for neutron scattering data and other large-scale materials science projects. In the context of the current challenges facing scientists, we discuss immersive virtual reality visualization as a potentially powerful solution. We introduce a prototype immersive visual- ization system, developed in conjunction with materials scientists at the Spallation Neutron Source, which we have used to explore large crystal structures and neutron scattering data. Finally, we offer our perspective on the greatest challenges that must be addressed to build effective and intuitive virtual reality analysis tools that will be useful for scientists in a wide range of fields.

  15. Why High Performance Visual Data Analytics is both Relevant and Difficult

    SciTech Connect (OSTI)

    Bethel, E. Wes; Byna, Suren; Ruebel, Oliver; Wu, K. John; Wehner, Michael

    2012-12-01

    Data visualization, as well as data analysis and data analytics, are all an integral part of the scientific process. Collectively, these technologies provide the means to gain insight into data of ever-increasing size and complexity. Over the past two decades, a substantial amount of visualization, analysis, and analytics R&D has focused on the challenges posed by increasing data size and complexity, as well as on the increasing complexity of a rapidly changing computational platform landscape. While some of this research focuses on solely on technologies, such as indexing and searching or novel analysis or visualization algorithms, other R&D projects focus on applying technological advances to specific application problems. Some of the most interesting and productive results occur when these two activities R&D and application are conducted in a collaborative fashion, where application needs drive R&D, and R&D results are immediately applicable to real world problems.

  16. An open source GIS tool to quantify the visual impact of wind turbines and photovoltaic panels

    SciTech Connect (OSTI)

    Minelli, Annalisa; Marchesini, Ivan; Taylor, Faith E.; De Rosa, Pierluigi; Casagrande, Luca; Cenci, Michele

    2014-11-15

    Although there are clear economic and environmental incentives for producing energy from solar and wind power, there can be local opposition to their installation due to their impact upon the landscape. To date, no international guidelines exist to guide quantitative visual impact assessment of these facilities, making the planning process somewhat subjective. In this paper we demonstrate the development of a method and an Open Source GIS tool to quantitatively assess the visual impact of these facilities using line-of-site techniques. The methods here build upon previous studies by (i) more accurately representing the shape of energy producing facilities, (ii) taking into account the distortion of the perceived shape and size of facilities caused by the location of the observer, (iii) calculating the possible obscuring of facilities caused by terrain morphology and (iv) allowing the combination of various facilities to more accurately represent the landscape. The tool has been applied to real and synthetic case studies and compared to recently published results from other models, and demonstrates an improvement in accuracy of the calculated visual impact of facilities. The tool is named r.wind.sun and is freely available from GRASS GIS AddOns. - Highlights: • We develop a tool to quantify wind turbine and photovoltaic panel visual impact. • The tool is freely available to download and edit as a module of GRASS GIS. • The tool takes into account visual distortion of the shape and size of objects. • The accuracy of calculation of visual impact is improved over previous methods.

  17. Use Of Vitamin B6 To Mitigate Visual Field Deficits Associated With The Use Of Gabaergic Drugs In Mannals

    DOE Patents [OSTI]

    Ashby, Jr., Charles R.

    2004-03-30

    The invention provides a method for treating visual field defects in a mammal in need thereof by administering an effective amount of vitamin B6 to the mammal.

  18. Model for Electron-Beam-Induced Current Analysis of mc-Si Addressing Defect Contrast Behavior in Heavily Contaminated PV Material: Preprint

    SciTech Connect (OSTI)

    Guthrey, H.; Gorman, B.; Al-Jassim, M.

    2012-06-01

    Much work has been done to correlate electron-beam-induced current (EBIC) contrast behavior of extended defects with the character and degree of impurity decoration. However, existing models fail to account for recently observed contrast behavior of defects in heavily contaminated mc-Si PV cells. We have observed large increases in defect contrast with decreasing temperature for all electrically active defects, regardless of their initial contrast signatures at ambient temperature. This negates the usefulness of the existing models in identifying defect character and levels of impurity decoration based on the temperature dependence of the contrast behavior. By considering the interactions of transition metal impurities with the silicon lattice and extended defects, we attempt to provide an explanation for these observations. Our findings will enhance the ability of the PV community to understand and mitigate the effects of these types of defects as the adoption of increasingly lower purity feedstocks for mc-Si PV production continues.

  19. Li electrodeposition dynamics visualized in-situ via a TEM liquid cell.

    Office of Scientific and Technical Information (OSTI)

    (Conference) | SciTech Connect Li electrodeposition dynamics visualized in-situ via a TEM liquid cell. Citation Details In-Document Search Title: Li electrodeposition dynamics visualized in-situ via a TEM liquid cell. Abstract not provided. Authors: Leenheer, Andrew Jay ; Jungjohann, Katherine Leigh ; Zavadil, Kevin Robert ; Harris, Charles Thomas Publication Date: 2014-12-01 OSTI Identifier: 1242784 Report Number(s): SAND2014-20286C 547565 DOE Contract Number: AC04-94AL85000 Resource Type:

  20. Deploying web-based visual exploration tools on the grid (Journal Article)

    Office of Scientific and Technical Information (OSTI)

    | SciTech Connect Journal Article: Deploying web-based visual exploration tools on the grid Citation Details In-Document Search Title: Deploying web-based visual exploration tools on the grid × You are accessing a document from the Department of Energy's (DOE) SciTech Connect. This site is a product of DOE's Office of Scientific and Technical Information (OSTI) and is provided as a public service. Visit OSTI to utilize additional information resources in energy science and technology. A

  1. Efficient Feature-Driven Visualization of Large-Scale Scientific Data

    SciTech Connect (OSTI)

    Lu, Aidong

    2012-12-12

    Very large, complex scientific data acquired in many research areas creates critical challenges for scientists to understand, analyze, and organize their data. The objective of this project is to expand the feature extraction and analysis capabilities to develop powerful and accurate visualization tools that can assist domain scientists with their requirements in multiple phases of scientific discovery. We have recently developed several feature-driven visualization methods for extracting different data characteristics of volumetric datasets. Our results verify the hypothesis in the proposal and will be used to develop additional prototype systems.

  2. Linking Automated Data Analysis and Visualization with Applications in Developmental Biology and High-Energy Physics

    SciTech Connect (OSTI)

    Ruebel, Oliver

    2009-12-01

    Knowledge discovery from large and complex collections of today's scientific datasets is a challenging task. With the ability to measure and simulate more processes at increasingly finer spatial and temporal scales, the increasing number of data dimensions and data objects is presenting tremendous challenges for data analysis and effective data exploration methods and tools. Researchers are overwhelmed with data and standard tools are often insufficient to enable effective data analysis and knowledge discovery. The main objective of this thesis is to provide important new capabilities to accelerate scientific knowledge discovery form large, complex, and multivariate scientific data. The research covered in this thesis addresses these scientific challenges using a combination of scientific visualization, information visualization, automated data analysis, and other enabling technologies, such as efficient data management. The effectiveness of the proposed analysis methods is demonstrated via applications in two distinct scientific research fields, namely developmental biology and high-energy physics.Advances in microscopy, image analysis, and embryo registration enable for the first time measurement of gene expression at cellular resolution for entire organisms. Analysis of high-dimensional spatial gene expression datasets is a challenging task. By integrating data clustering and visualization, analysis of complex, time-varying, spatial gene expression patterns and their formation becomes possible. The analysis framework MATLAB and the visualization have been integrated, making advanced analysis tools accessible to biologist and enabling bioinformatic researchers to directly integrate their analysis with the visualization. Laser wakefield particle accelerators (LWFAs) promise to be a new compact source of high-energy particles and radiation, with wide applications ranging from medicine to physics. To gain insight into the complex physical processes of particle acceleration, physicists model LWFAs computationally. The datasets produced by LWFA simulations are (i) extremely large, (ii) of varying spatial and temporal resolution, (iii) heterogeneous, and (iv) high-dimensional, making analysis and knowledge discovery from complex LWFA simulation data a challenging task. To address these challenges this thesis describes the integration of the visualization system VisIt and the state-of-the-art index/query system FastBit, enabling interactive visual exploration of extremely large three-dimensional particle datasets. Researchers are especially interested in beams of high-energy particles formed during the course of a simulation. This thesis describes novel methods for automatic detection and analysis of particle beams enabling a more accurate and efficient data analysis process. By integrating these automated analysis methods with visualization, this research enables more accurate, efficient, and effective analysis of LWFA simulation data than previously possible.

  3. Ultra-Scale Visualization: Research and Education. (Conference) | SciTech

    Office of Scientific and Technical Information (OSTI)

    Connect Conference: Ultra-Scale Visualization: Research and Education. Citation Details In-Document Search Title: Ultra-Scale Visualization: Research and Education. Abstract not provided. Authors: Moreland, Kenneth D. ; Ma, Kwan-Liu ; Ross, Robert ; Huang, Jian ; Humphreys, Greg ; Max, Nelson ; Owens, John D. ; Shen, Han-Wei Publication Date: 2007-08-01 OSTI Identifier: 1147497 Report Number(s): SAND2007-4947C 522191 DOE Contract Number: DE-AC04-94AL85000 Resource Type: Conference Resource

  4. Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) Final Report

    SciTech Connect (OSTI)

    Williams, Dean N.

    2014-05-19

    A partnership across government, academic, and private sectors has created a novel system that enables climate researchers to solve current and emerging data analysis and visualization challenges. The Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) software project utilizes the Python application programming interface (API) combined with C/C++/Fortran implementations for performance-critical software that offers the best compromise between "scalability" and “ease-of-use.” The UV-CDAT system is highly extensible and customizable for high-performance interactive and batch visualization and analysis for climate science and other disciplines of geosciences. For complex, climate data-intensive computing, UV-CDAT’s inclusive framework supports Message Passing Interface (MPI) parallelism as well as taskfarming and other forms of parallelism. More specifically, the UV-CDAT framework supports the execution of Python scripts running in parallel using the MPI executable commands and leverages Department of Energy (DOE)-funded general-purpose, scalable parallel visualization tools such as ParaView and VisIt. This is the first system to be successfully designed in this way and with these features. The climate community leverages these tools and others, in support of a parallel client-server paradigm, allowing extreme-scale, server-side computing for maximum possible speed-up.

  5. An Application of Multivariate Statistical Analysis for Query-Driven Visualization

    SciTech Connect (OSTI)

    Gosink, Luke J.; Garth, Christoph; Anderson, John C.; Bethel, E. Wes; Joy, Kenneth I.

    2010-03-01

    Abstract?Driven by the ability to generate ever-larger, increasingly complex data, there is an urgent need in the scientific community for scalable analysis methods that can rapidly identify salient trends in scientific data. Query-Driven Visualization (QDV) strategies are among the small subset of techniques that can address both large and highly complex datasets. This paper extends the utility of QDV strategies with a statistics-based framework that integrates non-parametric distribution estimation techniques with a new segmentation strategy to visually identify statistically significant trends and features within the solution space of a query. In this framework, query distribution estimates help users to interactively explore their query's solution and visually identify the regions where the combined behavior of constrained variables is most important, statistically, to their inquiry. Our new segmentation strategy extends the distribution estimation analysis by visually conveying the individual importance of each variable to these regions of high statistical significance. We demonstrate the analysis benefits these two strategies provide and show how they may be used to facilitate the refinement of constraints over variables expressed in a user's query. We apply our method to datasets from two different scientific domains to demonstrate its broad applicability.

  6. Interactive, Internet Delivery of Scientific Visualization viaStructured, Prerendered Multiresolution Imagery

    SciTech Connect (OSTI)

    Chen, Jerry; Yoon, Ilmi; Bethel, E. Wes

    2005-04-20

    We present a novel approach for highly interactive remote delivery of visualization results. Instead of real-time rendering across the internet, our approach, inspired by QuickTime VR's Object Movieconcept, delivers pre-rendered images corresponding to different viewpoints and different time steps to provide the experience of 3D and temporal navigation. We use tiled, multiresolution image streaming to consume minimum bandwidth while providing the maximum resolution that a user can perceive from a given viewpoint. Since image data, a viewpoint and time stamps are the only required inputs, our approach is generally applicable to all visualization and graphics rendering applications capable of generating image files in an ordered fashion. Our design is a form of latency-tolerant remote visualization, where visualization and Rendering time is effectively decoupled from interactive exploration. Our approach trades off increased interactivity, flexible resolution (for individual clients), reduced load and effective reuse of coherent frames between multiple users (from the servers perspective) at the expense of unconstrained exploration. A normal web server is the vehicle for providing on-demand images to the remote client application, which uses client-pull to obtain and cache only those images required to fulfill the interaction needs. This paper presents an architectural description of the system along with a performance characterization for stage of production, delivery and viewing pipeline.

  7. Proof-of-Concept Demonstration Results for Robotic Visual Servo Controllers

    SciTech Connect (OSTI)

    Chawda, P.V.

    2004-09-22

    There is significant motivation to provide robotic systems with improved autonomy as a means to significantly accelerate deactivation and decommissioning operations while also reducing the associated costs, removing human operators from hazardous environments, and reducing the required burden and skill of human operators. To achieve improved autonomy, fundamental research is focused on the challenges of developing visual servo controllers. The challenge in developing these controllers is that a camera provides 2-dimensional image information about the 3-dimensional Euclidean-space through a perspective (range dependent) projection that can be corrupted by uncertainty in the camera calibration matrix. Disturbances in this relationship (i.e., corruption in the sensor information) propagate erroneous information to the feedback controller of the robot, leading to potentially unpredictable task execution. This technical manual describes 3 proof-of-concept demonstrations of visual servo controllers developed from fundamental research aimed at these challenges. Specifically, one section describes the implementation of a cooperative visual servo control scheme with a camera-in-hand and a fixed camera to track a moving target despite uncertainty in the camera calibration and the unknown constant distance from the camera to a target where the camera is mounted on the end-effector of a 6 degrees-of-freedom hydraulic robot manipulator. The next section describes the implementation of 2 homography-based visual servo tracking and regulation controllers for a mobile robot with a calibrated camera despite an unknown time-varying distance from the camera to a target.

  8. Ultra-scale Visualization Climate Data Analysis Tools (UV-CDAT)

    SciTech Connect (OSTI)

    Williams, Dean N.

    2011-07-20

    This report summarizes work carried out by the Ultra-scale Visualization Climate Data Analysis Tools (UV-CDAT) Team for the period of January 1, 2011 through June 30, 2011. It discusses highlights, overall progress, period goals, and collaborations and lists papers and presentations. To learn more about our project, please visit our UV-CDAT website (URL: http://uv-cdat.org). This report will be forwarded to the program manager for the Department of Energy (DOE) Office of Biological and Environmental Research (BER), national and international collaborators and stakeholders, and to researchers working on a wide range of other climate model, reanalysis, and observation evaluation activities. The UV-CDAT executive committee consists of Dean N. Williams of Lawrence Livermore National Laboratory (LLNL); Dave Bader and Galen Shipman of Oak Ridge National Laboratory (ORNL); Phil Jones and James Ahrens of Los Alamos National Laboratory (LANL), Claudio Silva of Polytechnic Institute of New York University (NYU-Poly); and Berk Geveci of Kitware, Inc. The UV-CDAT team consists of researchers and scientists with diverse domain knowledge whose home institutions also include the National Aeronautics and Space Administration (NASA) and the University of Utah. All work is accomplished under DOE open-source guidelines and in close collaboration with the project's stakeholders, domain researchers, and scientists. Working directly with BER climate science analysis projects, this consortium will develop and deploy data and computational resources useful to a wide variety of stakeholders, including scientists, policymakers, and the general public. Members of this consortium already collaborate with other institutions and universities in researching data discovery, management, visualization, workflow analysis, and provenance. The UV-CDAT team will address the following high-level visualization requirements: (1) Alternative parallel streaming statistics and analysis pipelines - Data parallelism, Task parallelism, Visualization parallelism; (2) Optimized parallel input/output (I/O); (3) Remote interactive execution; (4) Advanced intercomparison visualization; (5) Data provenance processing and capture; and (6) Interfaces for scientists - Workflow data analysis and visualization construction tools, and Visualization interfaces.

  9. Atomic-Resolution Visualization of Distinctive Chemical Mixing Behavior of Ni, Co and Mn with Li in Layered Lithium Transition-Metal Oxide Cathode Materials

    SciTech Connect (OSTI)

    Yan, Pengfei; Zheng, Jianming; Lv, Dongping; Wei, Yi; Zheng, Jiaxin; Wang, Zhiguo; Kuppan, Saravanan; Yu, Jianguo; Luo, Langli; Edwards, Danny J.; Olszta, Matthew J.; Amine, Khalil; Liu, Jun; Xiao, Jie; Pan, Feng; Chen, Guoying; Zhang, Jiguang; Wang, Chong M.

    2015-07-06

    Capacity and voltage fading of layer structured cathode based on lithium transition metal oxide is closely related to the lattice position and migration behavior of the transition metal ions. However, it is scarcely clear about the behavior of each of these transition metal ions. We report direct atomic resolution visualization of interatomic layer mixing of transition metal (Ni, Co, Mn) and lithium ions in layer structured oxide cathodes for lithium ion batteries. Using chemical imaging with aberration corrected scanning transmission electron microscope (STEM) and DFT calculations, we discovered that in the layered cathodes, Mn and Co tend to reside almost exclusively at the lattice site of transition metal (TM) layer in the structure or little interlayer mixing with Li. In contrast, Ni shows high degree of interlayer mixing with Li. The fraction of Ni ions reside in the Li layer followed a near linear dependence on total Ni concentration before reaching saturation. The observed distinctively different behavior of Ni with respect to Co and Mn provides new insights on both capacity and voltage fade in this class of cathode materials based on lithium and TM oxides, therefore providing scientific basis for selective tailoring of oxide cathode materials for enhanced performance.

  10. Discover, Visualize, and Deliver Geospatial Data through OGC Standards-based WebGIS System

    SciTech Connect (OSTI)

    Wei, Yaxing; SanthanaVannan, Suresh K; Cook, Robert B

    2009-01-01

    Geospatial data are important to understand the Earth - ecosystem dynamics, land cover changes, resource management, and human interactions with the Earth to name a few. One of the biggest difficulties users face is to discover, access, and assemble distributed, large volume, heterogeneous geospatial data to conduct geo-analysis. Traditional methods of geospatial data discovery, visualization, and delivery lack the capabilities of resource sharing and automation across systems or organizational boundaries. They require users to download the data ldquoas-isrdquo in their original file format, projection, and extent. Also, discovering data served by traditional methods requires prior knowledge of data location, and processing requires specialized expertise. These drawbacks of traditional methods create additional burden to users, introduce too much overhead to research, and also reduce the potential usage of the data. At the Oak Ridge National Laboratory (ORNL), researchers working on NASA-sponsored projects: Distributed Active Archive Center (DAAC) and Modeling and Synthesis Thematic Data Center (MAST-DC) have tapped into the benefits of Open Geospatial Consortium (OGC) standards to overcome the drawbacks of traditional methods of geospatial data discovery, visualization, and delivery. The OGC standards-based approach facilitates data sharing and interoperability across network, organizational, and geopolitical boundaries. Tools and services based on OGC standards deliver the data in many user defined formats and allow users to visualize the data prior to download. This paper introduces an approach taken to visualize and deliver ORNL DAAC, MAST-DC, and other relevant geospatial data through OGC standards-based Web Services, including Web Map Service (WMS), Web Coverage Service (WCS), and Web Feature Service (WFS). It also introduces a WebGIS system built on top of OGC services that helps users discover, visualize, and access geospatial data.

  11. Development of a Laser-Produced Plasma X-ray source for Phase-Contrast Radiography of DT Ice layers

    SciTech Connect (OSTI)

    Izumi, N; Dewald, E; Kozioziemski, B; Landen, O L; Koch, J A

    2008-07-21

    Refraction enhanced x-ray phase contrast imaging is crucial for characterization of deuterium-tritium (DT) ice layer roughness in optically opaque inertial confinement fusion capsules. To observe the time development of DT ice roughness over {approx} second timescales, we need a bright x-ray source that can produce an image faster than the evolution of the ice surface roughness. A laser produced plasma x-ray source is one of the candidates that can meet this requirement. We performed experiments at the Janus laser facility at Lawrence Livermore National Laboratory and assessed the characteristics of the laser produced plasma x-ray source as a potential backlight for in situ target characterization.

  12. System for phase-contrast x-ray radiography using X pinch radiation and a method thereof

    DOE Patents [OSTI]

    Chandler, Katherine; Chelkovenko, Tatiana; Hammer, David; Pikuz, Sergei; Sinars, Daniel; Song, Byungmoo

    2007-11-06

    A radiograph system with an anode plate, a cathode plate, and a power source coupled to said anode plate and the cathode plate. At least two wires coupled between the anode plate and the cathode plate provide a configuration to form an X-pinch having a photon source size of less than five microns at energies above 2.5 keV. Material at the configuration forming the X-pinch vaporizes upon application of a suitable current to the wires forming a dense hot plasma and emitting a single x-ray pulse with sufficient photons having energies in the range of from about 2.5 keV to about 20 keV to provide a phase contrast image of an object in the path of the photons. Multiple simultaneous images may be formed of a plurality of objects. Suitable filters and x-ray detectors are provided.

  13. Pretreatment Evaluation of Microcirculation by Dynamic Contrast-Enhanced Magnetic Resonance Imaging Predicts Survival in Primary Rectal Cancer Patients

    SciTech Connect (OSTI)

    DeVries, Alexander Friedrich; Piringer, Gudrun; Kremser, Christian; Judmaier, Werner; Saely, Christoph Hubert; Lukas, Peter; Öfner, Dietmar

    2014-12-01

    Purpose: To investigate the prognostic value of the perfusion index (PI), a microcirculatory parameter estimated from dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI), which integrates information on both flow and permeability, to predict overall survival and disease-free survival in patients with primary rectal cancer. Methods and Materials: A total of 83 patients with stage cT3 rectal cancer requiring neoadjuvant chemoradiation were investigated with DCE-MRI before start of therapy. Contrast-enhanced dynamic T{sub 1} mapping was obtained, and a simple data analysis strategy based on the calculation of the maximum slope of the tissue concentration–time curve divided by the maximum of the arterial input function was used as a measure of tumor microcirculation (PI), which integrates information on both flow and permeability. Results: In 39 patients (47.0%), T downstaging (ypT0-2) was observed. During a mean (±SD) follow-up period of 71 ± 29 months, 58 patients (69.9%) survived, and disease-free survival was achieved in 45 patients (54.2%). The mean PI (PImean) averaged over the group of nonresponders was significantly higher than for responders. Additionally, higher PImean in age- and gender-adjusted analyses was strongly predictive of therapy nonresponse. Most importantly, PImean strongly and significantly predicted disease-free survival (unadjusted hazard ratio [HR], 1.85 [ 95% confidence interval, 1.35-2.54; P<.001)]; HR adjusted for age and sex, 1.81 [1.30-2.51]; P<.001) as well as overall survival (unadjusted HR 1.42 [1.02-1.99], P=.040; HR adjusted for age and sex, 1.43 [1.03-1.98]; P=.034). Conclusions: This analysis identifies PImean as a novel biomarker that is predictive for therapy response, disease-free survival, and overall survival in patients with primary locally advanced rectal cancer.

  14. Hepatic injury induces contrasting response in liver and kidney to chemicals that are metabolically activated: Role of male sex hormone

    SciTech Connect (OSTI)

    Kim, Young C. [College of Pharmacy, Seoul National University, San 56-1 Shinrim-Dong, Kwanak-Ku, Seoul (Korea, Republic of)], E-mail: youckim@snu.ac.kr; Yim, Hye K.; Jung, Young S. [College of Pharmacy, Seoul National University, San 56-1 Shinrim-Dong, Kwanak-Ku, Seoul (Korea, Republic of); Park, Jae H. [College of Veterinary Medicine, Seoul National University, San 56-1 Shinrim-Dong, Kwanak-Ku, Seoul (Korea, Republic of); Kim, Sung Y. [College of Pharmacy, Wonkwang University, 344-2 Shinyong-Dong, Iksan (Korea, Republic of)

    2007-08-15

    Injury to liver, resulting in loss of its normal physiological/biochemical functions, may adversely affect a secondary organ. We examined the response of the liver and kidney to chemical substances that require metabolic activation for their toxicities in mice with a preceding liver injury. Carbon tetrachloride treatment 24 h prior to a challenging dose of carbon tetrachloride or acetaminophen decreased the resulting hepatotoxicity both in male and female mice as determined by histopathological examination and increases in serum enzyme activities. In contrast, the renal toxicity of the challenging toxicants was elevated markedly in male, but not in female mice. Partial hepatectomy also induced similar changes in the hepatotoxicity and nephrotoxicity of a challenging toxicant, suggesting that the contrasting response of male liver and kidney was associated with the reduction of the hepatic metabolizing capacity. Carbon tetrachloride pretreatment or partial hepatectomy decreased the hepatic xenobiotic-metabolizing enzyme activities in both sexes but elevated the renal p-nitrophenol hydroxylase, p-nitroanisole O-demethylase and aminopyrine N-demethylase activities significantly only in male mice. Increases in Cyp2e1 and Cyp2b expression were also evident in male kidney. Castration of males or testosterone administration to females diminished the sex-related differences in the renal response to an acute liver injury. The results indicate that reduction of the hepatic metabolizing capacity induced by liver injury may render secondary target organs susceptible to chemical substances activated in these organs. This effect may be sex-specific. It is also suggested that an integrated approach should be taken for proper assessment of chemical hazards.

  15. Multiphoton photoluminescence contrast in switched Mg:LiNbO{sub 3} and Mg:LiTaO{sub 3} single crystals

    SciTech Connect (OSTI)

    Reichenbach, P., E-mail: philipp.reichenbach@iapp.de; Kmpfe, T.; Thiessen, A.; Haumann, A.; Eng, L. M. [Institut fr Angewandte Photophysik, Technische Universitt Dresden, George-Bhr-Str. 1, 01069 Dresden (Germany); Woike, T. [Institut fr Strukturphysik, Technische Universitt Dresden, Zellescher Weg 16, 01069 Dresden (Germany)

    2014-09-22

    We observed a multiphoton luminescence contrast between virgin and single-switched domains in Mg-doped LiNbO{sub 3} (LNO) and LiTaO{sub 3} (LTO) single crystals with different doping levels of 07?mol. % and 08?mol. %, respectively. A luminescence contrast in the range of 3% was measured between as-grown and electrically inverted domain areas in Mg:LNO samples, while the contrast reaches values of up to 30% for the Mg:LTO case. Under annealing, an exponential decay of the domain contrast was observed. The activation energy of about 1?eV being determined for the decay allowed a comparison with reported activation energies of associated defects, clearly illustrating a strong connection between thermal contrast decay and the H{sup +} and Li{sup +}-ion mobility. Finally, performing similar experiments on oxidized samples undoubtedly demonstrated that the origin of the reported luminescence contrast is strongly connected with lithium ions.

  16. appl_household2001.pdf

    U.S. Energy Information Administration (EIA) Indexed Site

    ... 1.9 0.3 0.5 0.3 0.3 0.6 26.4 Video Cassette Recorders (VCRs) and DVD Players ... 1.9 0.3 0.4 0.5 Q Q 0.4 25.0 Video Cassette Recorders (VCRs) and DVD Players ...

  17. Cactus and Visapult: A case study of ultra-high performance distributed visualization using connectionless protocols

    SciTech Connect (OSTI)

    Shalf, John; Bethel, E. Wes

    2002-05-07

    This past decade has seen rapid growth in the size, resolution, and complexity of Grand Challenge simulation codes. Many such problems still require interactive visualization tools to make sense of multi-terabyte data stores. Visapult is a parallel volume rendering tool that employs distributed components, latency tolerant algorithms, and high performance network I/O for effective remote visualization of massive datasets. In this paper we discuss using connectionless protocols to accelerate Visapult network I/O and interfacing Visapult to the Cactus General Relativity code to enable scalable remote monitoring and steering capabilities. With these modifications, network utilization has moved from 25 percent of line-rate using tuned multi-streamed TCP to sustaining 88 percent of line rate using the new UDP-based transport protocol.

  18. GRIZ: Finite element analysis results visualization for unstructured grids. User manual

    SciTech Connect (OSTI)

    Dovey, D.J.; Spelce, T.E.

    1993-10-01

    GRIZ supports interactive visualization of finite element analysis results on unstructured grids. GRIZ is a general-purpose post-processing application which is designed to work with a variety of an analysis codes. Currently, GRIZ is capable of calculating and displaying derived variables for the DYNA3D, NIKE3D and TOPAZ3D analysis codes. GRIZ reads in data files in the ``MDG plotfile`` format. GRIZ provides support for modern 3D visualization techniques such as isosurface display, cutting planes and display of vector data. GRIZ also incorporates the ability to animate data over time and to store animation frames to a video disk. GRIZ is designed to utilize the capabilities of modern graphics workstations which provide hardware support for 3D graphics, thereby giving the user as much interactive performance as possible. This should make it easier for analysts to explore and interrogate their analysis results.

  19. Pathways to Identity: Aiding Law Enforcement in Identification Tasks With Visual Analytics

    SciTech Connect (OSTI)

    Bruce, Joseph R.; Scholtz, Jean; Hodges, Duncan; Emanuel, Lia; Stanton-Fraser, Danae; Creese, Sadie; Love, Oriana J.

    2014-09-18

    The nature of identity has changed dramatically in recent years, and has grown in complexity. Identities are defined in multiple domains: biological and psychological elements strongly contribute, but also biographical and cyber elements are necessary to complete the picture. Law enforcement is beginning to adjust to these changes, recognizing its importance in criminal justice. The SuperIdentity project seeks to aid law enforcement officials in their identification tasks through research of techniques for discovering identity traits, generation of statistical models of identity and analysis of identity traits through visualization. We present use cases compiled through user interviews in multiple fields, including law enforcement, as well as the modeling and visualization tools design to aid in those use cases.

  20. Have Green – A Visual Analytics Framework for Large Semantic Graphs

    SciTech Connect (OSTI)

    Wong, Pak C.; Chin, George; Foote, Harlan P.; Mackey, Patrick S.; Thomas, James J.

    2006-10-29

    A semantic graph is a network of heterogeneous nodes and links annotated with a domain ontology. In intelligence analysis, investigators use semantic graphs to organize concepts and relationships as graph nodes and links in hopes of discovering key trends, patterns, and insights. However, as new information continues to arrive from a multitude of sources, the size and complexity of the semantic graphs will soon overwhelm an investigator's cognitive capacity to carry out significant analyses. We introduce a powerful visual analytics framework designed to enhance investigators--natural analytical capabilities to comprehend and analyze large semantic graphs. The paper describes the overall framework design, presents major development accomplishments to date, and discusses future directions of a new visual analytics system known as Have Green.

  1. Text Stream Trend Analysis using Multiscale Visual Analytics with Applications to Social Media Systems

    SciTech Connect (OSTI)

    Steed, Chad A; Beaver, Justin M; BogenII, Paul L.; Drouhard, Margaret MEG G; Pyle, Joshua M

    2015-01-01

    In this paper, we introduce a new visual analytics system, called Matisse, that allows exploration of global trends in textual information streams with specific application to social media platforms. Despite the potential for real-time situational awareness using these services, interactive analysis of such semi-structured textual information is a challenge due to the high-throughput and high-velocity properties. Matisse addresses these challenges through the following contributions: (1) robust stream data management, (2) automated sen- timent/emotion analytics, (3) inferential temporal, geospatial, and term-frequency visualizations, and (4) a flexible drill-down interaction scheme that progresses from macroscale to microscale views. In addition to describing these contributions, our work-in-progress paper concludes with a practical case study focused on the analysis of Twitter 1% sample stream information captured during the week of the Boston Marathon bombings.

  2. iGlobe: an interactive visualization and analysis framework for geospatial data

    SciTech Connect (OSTI)

    Chandola, Varun; Vatsavai, Raju; Bhaduri, Budhendra L

    2011-01-01

    We demonstrate an interactive visualization and analysis system for integrating climate data with other geospatial data sets, such as environmental and demographic data. The \\eviz system is a desktop-based visualization and analysis environment which allows seamless integration of multiple geospatial data sets from varied sources and provides an interface to interactively analyze the different data sets and apply sophisticated data analysis and mining algorithms in a near real time fashion. The framework is highly desirable in domains such as earth and climate sciences where great emphasis is placed on simultaneous analysis of different data sets such as remote sensing images, climate model simulation outputs, and other environmental and demographic databases, to understand weather and climate systems and the impact of climate change on nature and people.

  3. SCIENCE ON SATURDAY-"Visualizing the Atomic World" | Princeton Plasma

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Physics Lab 2, 2013, 9:30am Science On Saturday MBG Auditorium SCIENCE ON SATURDAY-"Visualizing the Atomic World" Professor Udo Schwarz Department of Mechanical Engineering & Materials Science and Department of Chemical & Environmental Engineering, Yale University Presentation: Office presentation icon SOS12JAN2013_UDSchwarz.ppt Abstract: PDF icon U.Schwarz.pdf Science on Saturday is a series of lectures given by scientists, mathematicians, and other professionals involved

  4. Sandia Wins Funding for Programming In Situ Data Analysis/Visualization

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Programming In Situ Data Analysis/Visualization - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Fuel Cycle Defense Waste

  5. VisIt: An End-User Tool for Visualizing and Analyzing Very Large Data

    SciTech Connect (OSTI)

    Childs, Hank; Brugger, Eric; Whitlock, Brad; Meredith, Jeremy; Ahern, Sean; Pugmire, David; Biagas, Kathleen; Miller, Mark; Weber, Gunther H.; Krishnan, Hari; Fogal, Thomas; Sanderson, Allen; Garth, Christoph; Bethel, E. Wes; Camp, David; Ruebel, Oliver; Durant, Marc; Favre, Jean; Navratil, Paul

    2012-11-01

    VisIt is a popular open source tool for visualizing and analyzing big data. It owes its success to its foci of increasing data understanding, large data support, and providing a robust and usable product, as well as its underlying design that fits today's supercomputing landscape. This report, which draws heavily from an earlier publication at the SciDAC Conference in 2011 describes the VisIt project and its accomplishments.

  6. An Assessment of Remote Visual Methods to Detect Cracking in Reactor Components

    SciTech Connect (OSTI)

    Cumblidge, Stephen E.; Anderson, Michael T.; Doctor, Steven R.; Simonen, Fredric A.; Elliot, Anthony J.

    2008-01-01

    Recently, the U.S. nuclear industry has proposed replacing current volumetric and/or surface examinations of certain components in commercial nuclear power plants, as required by the American Society of Mechanical Engineers Boiler and Pressure Vessel Code Section XI, “Inservice Inspection of Nuclear Power Plant Components,” with a simpler visual testing (VT) method. The advantages of VT are that these tests generally involve much less radiation exposure and time to perform the examination than do volumetric examinations such as ultrasonic testing. The issues relative to the reliability of VT in determining the structural integrity of reactor components were examined. Some piping and pressure vessel components in a nuclear power station are examined using VT as they are either in high radiation fields or component geometry precludes the use of ultrasonic testing (UT) methodology. Remote VT with radiation-hardened video systems has been used by nuclear utilities to find cracks in pressure vessel cladding in pressurized water reactors, core shrouds in boiling water reactors, and to investigate leaks in piping and reactor components. These visual tests are performed using a wide variety of procedures and equipment. The techniques for remote VT use submersible closed-circuit video cameras to examine reactor components and welds. PNNL conducted a parametric study that examined the important variables influencing the effectiveness of a remote visual test. Tested variables included lighting techniques, camera resolution, camera movement, and magnification. PNNL also conducted a limited laboratory test using a commercial visual testing camera system to experimentally determine the ability of the camera system to detect cracks of various widths under ideal conditions. The results of these studies and their implications are presented in this paper.

  7. MO-E-18C-06: Enriching Medical Physics Education By Visualizing The Invisible

    SciTech Connect (OSTI)

    Sprawls, P

    2014-06-15

    Purpose: To enhance the understanding of medical physics concepts and develop higher levels of learning relating to invisible physics phenomena such as radiation. To provide medical physics educators in all countries of the world with understanding of knowledge structures in the human brain, the different levels of learning, and the types of knowledge required for higher level functions such as problem solving, creative innovations, and applied clinical applications. To provide medical physics educators with an open access resource (tool) that they can use in their teaching activities to enrich and elevate the level of learning for their students, residents, etc. with respect to the invisible realm of medical physics. Methods: An experienced clinical medical physicist and educator has created and provided with open access three complementary web-based resources to achieve the purposes described above. One is a module focusing on the medical physics learning process with respect to mental knowledge structures, how they relate to outcomes and applications, and learning activities that are required to develop the required knowledge structures. The second is an extensive set of visuals that educators can use in their activities (classes, small group discussions, etc.) to visualize the invisible. The third is an interactive online simulation where learners can adjust factors and visually observe changes in x-radiation.These resources are available online at www.BLINDED FOR REVIEW . Results: Medical physics education, especially for non-physicists, is becoming much more interesting and useful especially with respect to invisible radiation. The global impact is that medical imaging professionals can be more effective in optimizing x-ray imaging procedures and risk management when they have knowledge levels that enhance problem solving, innovation, and creativity. Conclusion: Medical physics educators in all institutions can be much more effective and efficient in the sharing of their knowledge and experience when enhanced with high-quality visuals.

  8. Visualization/In-situ Analysis Co-Chairs: Laura Monroe, David Karelitz

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualization/In-situ Analysis Co-Chairs: Laura Monroe, David Karelitz Scribe: Prabhat Approved for Unlimited Release: SAND2014-15984O 1 Contributors * Kevin Harms, ANL * Laura Monroe, LANL * Bob Kares, LANL * Ming Jiang, LLNL * Jeff Long, LLNL * Wes Bethel, LBL * Prabhat, LBL * Doug Fuller * David Karelitz, Sandia * Andy Wilson, Sandia 2 Top Findings * Computational Steering * Connecting experiments to simulations * High Fidelity Analysis Opportunities * Domain science involvement * Ability to

  9. Interactive visual comparison of multimedia data through type-specific views

    SciTech Connect (OSTI)

    Burtner, Edwin R.; Bohn, Shawn J.; Payne, Deborah A.

    2013-02-05

    Analysts who work with collections of multimedia to perform information foraging understand how difficult it is to connect information across diverse sets of mixed media. The wealth of information from blogs, social media, and news sites often can provide actionable intelligence; however, many of the tools used on these sources of content are not capable of multimedia analysis because they only analyze a single media type. As such, analysts are taxed to keep a mental model of the relationships among each of the media types when generating the broader content picture. To address this need, we have developed Canopy, a novel visual analytic tool for analyzing multimedia. Canopy provides insight into the multimedia data relationships by exploiting the linkages found in text, images, and video co-occurring in the same document and across the collection. Canopy connects derived and explicit linkages and relationships through multiple connected visualizations to aid analysts in quickly summarizing, searching, and browsing collected information to explore relationships and align content. In this paper, we will discuss the features and capabilities of the Canopy system and walk through a scenario illustrating how this system might be used in an operational environment. Keywords: Multimedia (Image/Video/Music) Visualization.

  10. Cherenkov Video Imaging Allows for the First Visualization of Radiation Therapy in Real Time

    SciTech Connect (OSTI)

    Jarvis, Lesley A.; Zhang, Rongxiao; Gladstone, David J.; Jiang, Shudong; Hitchcock, Whitney; Friedman, Oscar D.; Glaser, Adam K.; Jermyn, Michael; Pogue, Brian W.

    2014-07-01

    Purpose: To determine whether Cherenkov light imaging can visualize radiation therapy in real time during breast radiation therapy. Methods and Materials: An intensified charge-coupled device (CCD) camera was synchronized to the 3.25-μs radiation pulses of the clinical linear accelerator with the intensifier set × 100. Cherenkov images were acquired continuously (2.8 frames/s) during fractionated whole breast irradiation with each frame an accumulation of 100 radiation pulses (approximately 5 monitor units). Results: The first patient images ever created are used to illustrate that Cherenkov emission can be visualized as a video during conditions typical for breast radiation therapy, even with complex treatment plans, mixed energies, and modulated treatment fields. Images were generated correlating to the superficial dose received by the patient and potentially the location of the resulting skin reactions. Major blood vessels are visible in the image, providing the potential to use these as biological landmarks for improved geometric accuracy. The potential for this system to detect radiation therapy misadministrations, which can result from hardware malfunction or patient positioning setup errors during individual fractions, is shown. Conclusions: Cherenkoscopy is a unique method for visualizing surface dose resulting in real-time quality control. We propose that this system could detect radiation therapy errors in everyday clinical practice at a time when these errors can be corrected to result in improved safety and quality of radiation therapy.

  11. Visualizing Life Zone Boundary Sensitivities Across Climate Models and Temporal Spans

    SciTech Connect (OSTI)

    Sisneros, Roberto R; Huang, Jian; Ostrouchov, George; Hoffman, Forrest M

    2011-01-01

    Life zones are a convenient and quantifiable method for delineating areas with similar plant and animal communities based on bioclimatic conditions. Such ecoregionalization techniques have proved useful for defining habitats and for studying how these habitats may shift due to environmental change. The ecological impacts of climate change are of particular interest. Here we show that visualizations of the geographic projection of life zones may be applied to the investigation of potential ecological impacts of climate change using the results of global climate model simulations. Using a multi-factor classification scheme, we show how life zones change over time based on quantitative model results into the next century. Using two straightforward metrics, we identify regions of high sensitivity to climate changes from two global climate simulations under two different greenhouse gas emissions scenarios. Finally, we identify how preferred human habitats may shift under these scenarios. We apply visualization methods developed for the purpose of displaying multivariate relationships within data, especially for situations that involve a large number of concurrent relationships. Our method is based on the concept of multivariate classification, and is implemented directly in VisIt, a production quality visualization package.

  12. Visual language recognition with a feed-forward network of spiking neurons

    SciTech Connect (OSTI)

    Rasmussen, Craig E; Garrett, Kenyan; Sottile, Matthew; Shreyas, Ns

    2010-01-01

    An analogy is made and exploited between the recognition of visual objects and language parsing. A subset of regular languages is used to define a one-dimensional 'visual' language, in which the words are translational and scale invariant. This allows an exploration of the viewpoint invariant languages that can be solved by a network of concurrent, hierarchically connected processors. A language family is defined that is hierarchically tiling system recognizable (HREC). As inspired by nature, an algorithm is presented that constructs a cellular automaton that recognizes strings from a language in the HREC family. It is demonstrated how a language recognizer can be implemented from the cellular automaton using a feed-forward network of spiking neurons. This parser recognizes fixed-length strings from the language in parallel and as the computation is pipelined, a new string can be parsed in each new interval of time. The analogy with formal language theory allows inferences to be drawn regarding what class of objects can be recognized by visual cortex operating in purely feed-forward fashion and what class of objects requires a more complicated network architecture.

  13. Communication library for run-time visualization of distributed, asynchronous data

    SciTech Connect (OSTI)

    Rowlan, J.; Wightman, B.T.

    1994-04-01

    In this paper we present a method for collecting and visualizing data generated by a parallel computational simulation during run time. Data distributed across multiple processes is sent across parallel communication lines to a remote workstation, which sorts and queues the data for visualization. We have implemented our method in a set of tools called PORTAL (for Parallel aRchitecture data-TrAnsfer Library). The tools comprise generic routines for sending data from a parallel program (callable from either C or FORTRAN), a semi-parallel communication scheme currently built upon Unix Sockets, and a real-time connection to the scientific visualization program AVS. Our method is most valuable when used to examine large datasets that can be efficiently generated and do not need to be stored on disk. The PORTAL source libraries, detailed documentation, and a working example can be obtained by anonymous ftp from info.mcs.anl.gov from the file portal.tar.Z from the directory pub/portal.

  14. Matisse: A Visual Analytics System for Exploring Emotion Trends in Social Media Text Streams

    SciTech Connect (OSTI)

    Steed, Chad A; Drouhard, Margaret MEG G; Beaver, Justin M; Pyle, Joshua M; BogenII, Paul L.

    2015-01-01

    Dynamically mining textual information streams to gain real-time situational awareness is especially challenging with social media systems where throughput and velocity properties push the limits of a static analytical approach. In this paper, we describe an interactive visual analytics system, called Matisse, that aids with the discovery and investigation of trends in streaming text. Matisse addresses the challenges inherent to text stream mining through the following technical contributions: (1) robust stream data management, (2) automated sentiment/emotion analytics, (3) interactive coordinated visualizations, and (4) a flexible drill-down interaction scheme that accesses multiple levels of detail. In addition to positive/negative sentiment prediction, Matisse provides fine-grained emotion classification based on Valence, Arousal, and Dominance dimensions and a novel machine learning process. Information from the sentiment/emotion analytics are fused with raw data and summary information to feed temporal, geospatial, term frequency, and scatterplot visualizations using a multi-scale, coordinated interaction model. After describing these techniques, we conclude with a practical case study focused on analyzing the Twitter sample stream during the week of the 2013 Boston Marathon bombings. The case study demonstrates the effectiveness of Matisse at providing guided situational awareness of significant trends in social media streams by orchestrating computational power and human cognition.

  15. An Interactive Visual Analytics Framework for Multi-Field Data in a Geo-Spatial Context

    SciTech Connect (OSTI)

    Zhang, Zhiyuan; Tong, Xiaonan; McDonnell, Kevin T.; Zelenyuk, Alla; Imre, D.; Mueller, Klaus

    2013-04-01

    Climate research produces a wealth of multivariate data. These data often have a geospatial reference and so it is of interest to show them within their geospatial context. One can consider this configuration as a multi field visualization problem, where the geospace provides the expanse of the field. However, there is a limit on the amount of multivariate information that can be fit within a certain spatial location, and the use of linked multivari ate information displays has previously been devised to bridge this gap. In this paper we focus on the interactions in the geographical display, present an implementation that uses Google Earth, and demonstrate it within a tightly linked parallel coordinates display. Several other visual representations, such as pie and bar charts are integrated into the Google Earth display and can be interactively manipulated. Further, we also demonstrate new brushing and visualization techniques for parallel coordinates, such as fixedwindow brushing and correlationenhanced display. We conceived our system with a team of climate researchers, who already made a few important discov eries using it. This demonstrates our system’s great potential to enable scientific discoveries, possibly also in oth er domains where data have a geospatial reference.

  16. A Space-Filling Visualization Technique for Multivariate Small World Graphs

    SciTech Connect (OSTI)

    Wong, Pak C.; Foote, Harlan P.; Mackey, Patrick S.; Chin, George; Huang, Zhenyu; Thomas, James J.

    2012-03-15

    We introduce an information visualization technique, known as GreenCurve, for large sparse graphs that exhibit small world properties. Our fractal-based design approach uses spatial cues to approximate the node connections and thus eliminates the links between the nodes in the visualization. The paper describes a sophisticated algorithm to order the neighboring nodes of a large sparse graph by solving the Fiedler vector of its graph Laplacian, and then fold the graph nodes into a space-filling fractal curve based on the Fiedler vector. The result is a highly compact visualization that gives a succinct overview of the graph with guaranteed visibility of every graph node. We show in the paper that the GreenCurve technology is (1) theoretically sustainable by introducing an error estimation metric to measure the fidelity of the new graph representation, (2) empirically rigorous by conducting a usability study to investigate its strengths and weaknesses against the traditional graph layout, and (3) pragmatically feasible by applying it to analyze stressed conditions of the large scale electric power grid on the west coast.

  17. 1,2-Hydroxypyridonates as Contrast Agents for Magnetic ResonanceImaging: TREN-1,2-HOPO

    SciTech Connect (OSTI)

    Jocher, Christoph J.; Moore, Evan G.; Xu, Jide; Avedano, Stefano; Botta, Mauro; Aime, Silvio; Raymond, Kenneth N.

    2007-05-08

    1,2-Hydroxypyridinones (1,2-HOPO) form very stable lanthanide complexes that may be useful as contrast agents for Magnetic Resonance Imaging (MRI). X-ray diffraction of single crystals established that the solid state structures of the Eu(III) and the previously reported [Inorg. Chem. 2004, 43, 5452] Gd(III) complex are identical. The recently discovered sensitizing properties of 1,2-HOPO chelates for Eu(III) luminescence allow direct measurement of the number if water molecules in the metal complex. Fluorescence measurements of the Eu(III) complex corroborate that in solution two water molecules coordinate the lanthanide (q = 2) as proposed from the analysis of NMRD profiles. In addition, fluorescence measurements have verified the anion binding interactions of lanthanide TREN-1,2-HOPO complexes in solution, studied by relaxivity, revealing only very weak oxalate binding (K{sub A} = 82.7 {+-} 6.5 M{sup -1}). Solution thermodynamic studies of the metal complex and free ligand have been carried out using potentiometry, spectrophotometry and fluorescence spectroscopy. The metal ion selectivity of TREN-1,2-HOPO supports the feasibility of using 1,2-HOPO ligands for selective lanthanide binding [pGd = 19.3 (2); pZn = 15.2 (2), pCa = 8.8 (3)].

  18. Phase-Contrast MRI and CFD Modeling of Apparent 3He Gas Flow in Rat Pulmonary Airways

    SciTech Connect (OSTI)

    Minard, Kevin R.; Kuprat, Andrew P.; Kabilan, Senthil; Jacob, Rick E.; Einstein, Daniel R.; Carson, James P.; Corley, Richard A.

    2012-08-01

    Phase-contrast (PC) magnetic resonance imaging (MRI) with hyperpolarized 3He is potentially useful for developing and testing patient-specific models of pulmonary airflow. One challenge, however, is that PC-MRI provides apparent values of local 3He velocity that not only depend on actual airflow but also on gas diffusion. This not only blurs laminar flow patterns in narrow airways but also introduces anomalous airflow structure that reflects gas-wall interactions. Here, both effects are predicted in a live rat using computational fluid dynamics (CFD), and for the first time, simulated patterns of apparent 3He gas velocity are compared with in-vivo PC-MRI. Results show (1) that correlations (R2) between measured and simulated airflow patterns increase from 0.23 to 0.79 simply by accounting for apparent 3He transport, and that (2) remaining differences are mainly due to uncertain airway segmentation and partial volume effects stemming from relatively coarse MRI resolution. Higher-fidelity testing of pulmonary airflow predictions should therefore be possible with future imaging improvements.

  19. X-ray Diffraction and Multi-Frame Phase Contrast Imaging Diagnostics for IMPULSE at the Advanced Photon Source

    SciTech Connect (OSTI)

    Iverson, Adam; Carlson, Carl; Young, Jason; Curtis, Alden; Jensen, Brian; Ramos, Kyle; Yeager, John; Montgomery, David; Fezza, Kamel

    2013-07-08

    The diagnostic needs of any dynamic loading platform present unique technical challenges that must be addressed in order to accurately measure in situ material properties in an extreme environment. The IMPULSE platform (IMPact system for Ultrafast Synchrotron Experiments) at the Advanced Photon Source (APS) is no exception and, in fact, may be more challenging, as the imaging diagnostics must be synchronized to both the experiment and the 60 ps wide x-ray bunches produced at APS. The technical challenges of time-resolved x-ray diffraction imaging and high-resolution multi-frame phase contrast imaging (PCI) are described in this paper. Example data from recent IMPULSE experiments are shown to illustrate the advances and evolution of these diagnostics with a focus on comparing the performance of two intensified CCD cameras and their suitability for multi-frame PCI. The continued development of these diagnostics is fundamentally important to IMPULSE and many other loading platforms and will benefit future facilities such as the Dynamic Compression Sector at APS and MaRIE at Los Alamos National Laboratory.

  20. Visualizing Distributed Data with BigWig and BigBed at UCSC (2010 JGI/ANL HPC Workshop)

    ScienceCinema (OSTI)

    Kent, Jim [UCSC

    2011-06-08

    Jim Kent from University of California, Santa Cruz presents on "Visualizing Distributed Data with BigWig and BigBed at UCSC" at the JGI/Argonne HPC Workshop on January 26, 2010.

  1. Visual Comfort Analysis of Innovative Interior and Exterior Shading Systems for Commercial Buildings using High Resolution Luminance Images

    SciTech Connect (OSTI)

    Konis, Kyle; Lee, Eleanor; Clear, Robert

    2011-01-11

    The objective of this study was to explore how calibrated high dynamic range (HDR) images (luminance maps) acquired in real world daylit environments can be used to characterize, evaluate, and compare visual comfort conditions of innovative facade shading and light-redirecting systems. Detailed (1536 x 1536 pixel) luminance maps were time-lapse acquired from two view positions in an unoccupied full scale testbed facility. These maps were analyzed using existing visual comfort metrics to quantify how innovative interior and exterior shading systems compare to conventional systems under real sun and sky conditions over a solstice-to-solstice test interval. The results provide a case study in the challenges and potential of methods of visualizing, evaluating and summarizing daily and seasonal variation of visual comfort conditions computed from large sets of image data.

  2. Web-based, GPU-accelerated, Monte Carlo simulation and visualization of indirect radiation imaging detector performance

    SciTech Connect (OSTI)

    Dong, Han; Sharma, Diksha; Badano, Aldo

    2014-12-15

    Purpose: Monte Carlo simulations play a vital role in the understanding of the fundamental limitations, design, and optimization of existing and emerging medical imaging systems. Efforts in this area have resulted in the development of a wide variety of open-source software packages. One such package, hybridMANTIS, uses a novel hybrid concept to model indirect scintillator detectors by balancing the computational load using dual CPU and graphics processing unit (GPU) processors, obtaining computational efficiency with reasonable accuracy. In this work, the authors describe two open-source visualization interfaces, webMANTIS and visualMANTIS to facilitate the setup of computational experiments via hybridMANTIS. Methods: The visualization tools visualMANTIS and webMANTIS enable the user to control simulation properties through a user interface. In the case of webMANTIS, control via a web browser allows access through mobile devices such as smartphones or tablets. webMANTIS acts as a server back-end and communicates with an NVIDIA GPU computing cluster that can support multiuser environments where users can execute different experiments in parallel. Results: The output consists of point response and pulse-height spectrum, and optical transport statistics generated by hybridMANTIS. The users can download the output images and statistics through a zip file for future reference. In addition, webMANTIS provides a visualization window that displays a few selected optical photon path as they get transported through the detector columns and allows the user to trace the history of the optical photons. Conclusions: The visualization tools visualMANTIS and webMANTIS provide features such as on the fly generation of pulse-height spectra and response functions for microcolumnar x-ray imagers while allowing users to save simulation parameters and results from prior experiments. The graphical interfaces simplify the simulation setup and allow the user to go directly from specifying input parameters to receiving visual feedback for the model predictions.

  3. Query and Visualization of extremely large network datasets over the web using Quadtree based KML Regional Network Links

    SciTech Connect (OSTI)

    Dadi, Upendra; Liu, Cheng; Vatsavai, Raju

    2009-01-01

    Geographic data sets are often very large in size. Interactive visualization of such data at all scales is not easy because of the limited resolution of the monitors and inability of visualization applications to handle the volume of data. This is especially true for large vector datasets. The end user s experience is frequently unsatisfactory when exploring such data over the web using a naive application. Network bandwidth is another contributing factor to the low performance. In this paper, a Quadtree based technique to visualize extremely large spatial network datasets over the web is described. It involves using custom developed algorithms leveraging a PostGIS database as the data source and Google Earth as the visualization client. This methodology supports both point and range queries along with non-spatial queries. This methodology is demonstrated using a network dataset consisting of several million links. The methodology is based on using some of the powerful features of KML (Keyhole Markup Language). Keyhole Markup Language (KML) is an Open Geospatial Consortium (OGC) standard for displaying geospatial data on Earth browsers. One of the features of KML is the notion of Network Links. Using network links, a wide range of geospatial data sources such as geodatabases, static files and geospatial data services can be simultaneously accessed and visualized seamlessly. Using the network links combined with Level of Detail principle, view based rendering and intelligent server and client-side caching, scalability in visualizing extremely large spatial datasets can be achieved.

  4. Translation, Enhancement, Filtering, and Visualization of Large 3D Triangle Mesh

    Energy Science and Technology Software Center (OSTI)

    1997-04-21

    The runthru system consists of five programs: workcell filter, just do it, transl8g, decim8, and runthru. The workcell filter program is useful if the source of your 3D triangle mesh model is IGRIP. It will traverse a directory structure of Deneb IGRIP files and filter out any IGRIP part files that are not referenced by an accompanying IGRIP work cell file. The just do it program automates translating and/or filtering of large numbers of partsmore » that are organized in hierarchical directory structures. The transl8g program facilitates the interchange, topology generation, error checking, and enhancement of large 3D triangle meshes. Such data is frequently used to represent conceptual designs, scientific visualization volume modeling, or discrete sample data. Interchange is provided between several popular commercial and defacto standard geometry formats. Error checking is included to identify duplicate and zero area triangles. Model engancement features include common vertex joining, consistent triangle vertex ordering, vertex noemal vector averaging, and triangle strip generation. Many of the traditional O(n2) algorithms required to provide the above features have been recast and are o(nlog(n)) which support large mesh sizes. The decim8 program is based on a data filter algorithm that significantly reduces the number of triangles required to represent 3D models of geometry, scientific visualization results, and discretely sampled data. It eliminates local patches of triangles whose geometries are not appreciably different and replaces them with fewer, larger triangles. The algorithm has been used to reduce triangles in large conceptual design models to facilitate virtual walk throughs and to enable interactive viewing of large 3D iso-surface volume visualizations. The runthru program provides high performance interactive display and manipulation of 3D triangle mesh models.« less

  5. Visualization of Fiber Structurein the Left and Right Ventricleof a Human Heart

    SciTech Connect (OSTI)

    Rohmer, Damien; Sitek, Arkadiusz; Gullberg, Grant T.

    2006-07-12

    The human heart is composed of a helical network of musclefibers. Anisotropic least squares filtering followed by fiber trackingtechniques were applied to Diffusion Tensor Magnetic Resonance Imaging(DTMRI) data of the excised human heart. The fiber configuration wasvisualized by using thin tubes to increase 3-dimensional visualperception of the complex structure. All visualizations were performedusing the high-quality ray-tracing software POV-Ray. The fibers are shownwithin the left and right ventricles. Both ventricles exhibit similarfiber architecture and some bundles of fibers are shown linking right andleft ventricles on the posterior region of the heart.

  6. Visual and Electrical Evidence Supporting a Two-Plasma Mechanism of Vacuum Breakdown Initiation

    SciTech Connect (OSTI)

    Castano-Giraldo, C.; Aghazarian, Maro; Caughman, John B; Ruzic, D. N.

    2012-01-01

    The energy available during vacuum breakdown between copper electrodes at high vacuum was limited using resistors in series with the vacuum gap and arresting diodes. Surviving features observed with SEM in postmortem samples were tentatively correlated with electrical signals captured during breakdown using a Rogowski coil and a high-voltage probe. The visual and electrical evidence is consistent with the qualitative model of vacuum breakdown by unipolar arc formation by Schwirzke [1, 2]. The evidence paints a picture of two plasmas of different composition and scale being created during vacuum breakdown: an initial plasma made of degassed material from the metal surface, ignites a plasma made up of the electrode material.

  7. Integrating Heterogeneous Healthcare Datasets and Visual Analytics for Disease Bio-surveillance and Dynamics

    SciTech Connect (OSTI)

    Ramanathan, Arvind; Pullum, Laura L; Steed, Chad A; Quinn, Shannon; Chennubhotla, Chakra; Parker, Tara L

    2013-01-01

    n this paper, we present an overview of the big data chal- lenges in disease bio-surveillance and then discuss the use of visual analytics for integrating data and turning it into knowl- edge. We will explore two integration scenarios: (1) combining text and multimedia sources to improve situational awareness and (2) enhancing disease spread model data with real-time bio-surveillance data. Together, the proposed integration methodologies can improve awareness about when, where and how emerging diseases can affect wide geographic regions.

  8. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L.; Hanrahan, Patrick

    2006-08-08

    A method and system for producing graphics. A hierarchical structure of a database is determined. A visual table, comprising a plurality of panes, is constructed by providing a specification that is in a language based on the hierarchical structure of the database. In some cases, this language can include fields that are in the database schema. The database is queried to retrieve a set of tuples in accordance with the specification. A subset of the set of tuples is associated with a pane in the plurality of panes.

  9. Computer systems and methods for the query and visualization of multidimensional database

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L.; Hanrahan, Patrick

    2010-05-11

    A method and system for producing graphics. A hierarchical structure of a database is determined. A visual table, comprising a plurality of panes, is constructed by providing a specification that is in a language based on the hierarchical structure of the database. In some cases, this language can include fields that are in the database schema. The database is queried to retrieve a set of tuples in accordance with the specification. A subset of the set of tuples is associated with a pane in the plurality of panes.

  10. Electron elastic differential cross sections for free atoms using a scientific visualization package

    SciTech Connect (OSTI)

    Flox, L.; Ughrin, J.; Ozturk, N.

    1992-12-01

    Differential cross sections (DCS) of electron elastic scattering by free indium and antimony atoms are presented. The DCS were calculated using the method of partial waves and the optical model. The optical potential consists of static, polarization and exchange terms. Comparisons of experimental data for argon and mercury are used to establish the credibility of the model. The elastic data for indium and antimony covers the range from a few hundred eV`s to a few KeV. The data are presented in a Spyglass{reg_sign} scientific visualization package format.

  11. NREL: Dynamic Maps, GIS Data, and Analysis Tools - Data Visualization &

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Geospatial Tools MapSearch Searching for maps has never been easier. A screen capture of the MapSearch Map view option Bookmark and Share Data Visualization & Geospatial Tools NREL's Geospatial Data Science Team has developed tools that allow users to apply these data. These tools help determine things such as how much electricity can be produced from solar systems on a house or what renewable resources are available in a specific areas. Please visit http://maps.nrel.gov/ for the most

  12. Manifold compositions, music visualization, and scientific sonification in an immersive virtual-reality environment.

    SciTech Connect (OSTI)

    Kaper, H. G.

    1998-01-05

    An interdisciplinary project encompassing sound synthesis, music composition, sonification, and visualization of music is facilitated by the high-performance computing capabilities and the virtual-reality environments available at Argonne National Laboratory. The paper describes the main features of the project's centerpiece, DIASS (Digital Instrument for Additive Sound Synthesis); ''A.N.L.-folds'', an equivalence class of compositions produced with DIASS; and application of DIASS in two experiments in the sonification of complex scientific data. Some of the larger issues connected with this project, such as the changing ways in which both scientists and composers perform their tasks, are briefly discussed.

  13. Mantid - Data Analysis and Visualization Package for Neutron Scattering and $\\mu SR$ Experiments

    SciTech Connect (OSTI)

    Arnold, Owen; Bilheux, Jean-Christophe; Borreguero Calvo, Jose M; Buts, Alex; Campbell, Stuart I; Doucet, Mathieu; Draper, Nicholas J; Ferraz Leal, Ricardo F; Gigg, Martyn; Lynch, Vickie E; Mikkelson, Dennis J; Mikkelson, Ruth L; Miller, Ross G; Perring, Toby G; Peterson, Peter F; Ren, Shelly; Reuter, Michael A; Savici, Andrei T; Taylor, Jonathan W; Taylor, Russell J; Zhou, Wenduo; Zikovsky, Janik L

    2014-11-01

    The Mantid framework is a software solution developed for the analysis and visualization of neutron scattering and muon spin measurements. The framework is jointly developed by a large team of software engineers and scientists at the ISIS Neutron and Muon Facility and the Oak Ridge National Laboratory. The objective of the development is to improve software quality, both in terms of performance and ease of use, for the the user community of large scale facilities. The functionality and novel design aspects of the framework are described.

  14. iGlobe: An Interactive Visualization and Analysis Framework for Geospatial Data

    SciTech Connect (OSTI)

    2011-07-22

    The iGlobe system is a desktop-based visualization and analysis environment which allows seamless integration of multiple geospatial data sets from varied sources and provides an interface to interactively analyze the different data sets and apply sophisticated data analysis and mining algorithms in a near real time fashion. The framework is highly desirable in domains such as earth and climate sciences where great emphasis is placed on simultaneous analysis of different data sets such as remote sensing images, climate model simulation outputs, and other environmental and demographic databases, to understand weather and climate systems and the impact of climate change in nature and people.

  15. Development of a Visual Inspection Checklist for Evaluation of Fielded PV Module Condition (Presentation)

    SciTech Connect (OSTI)

    Packard, C. E; Wohlgemuth, J. H.; Kurtz, S. R.

    2012-03-01

    A visual inspection checklist for the evaluation of fielded photovoltaic (PV) modules has been developed to facilitate collection of data describing the field performance of PV modules. The proposed inspection checklist consists of 14 sections, each documenting the appearance or properties of a part of the module. This tool has been evaluated through the inspection of over 60 PV modules produced by more than 20 manufacturers and fielded at two different sites for varying periods of time. Aggregated data from a single data collection tool such as this checklist has the potential to enable longitudinal studies of module condition over time, technology evolution, and field location for the enhancement of module reliability models.

  16. Beam hardening and smoothing correction effects on performance of micro-ct SkyScan 1173 for imaging low contrast density materials

    SciTech Connect (OSTI)

    Sriwayu, Wa Ode; Haryanto, Freddy; Khotimah, Siti Nurul; Latief, Fourier Dzar Eljabbar

    2015-04-16

    We have designed and fabricated phantom mimicking breast cancer composition known as a region that has low contrast density. The used compositions are a microcalcifications, fatty tissues and tumor mass by using Al{sub 2}O{sub 3}, C{sub 27}H{sub 46}O, and hard nylon materials. Besides, phantom also has a part to calculate low cost criteria /CNR (Contrast to Noise Ratio). Uniformity will be measured at water distillation medium located in a part of phantom scale contrast. Phantom will be imaged by using micro ct-sky scan 1173 high energy type, and then also can be quantified CT number to examine SkyScan 1173 performance in imaging low contrast density materials. Evaluation of CT number is done at technique configuration parameter using voltage of 30?kV, exposure 0.160 mAs, and camera resolution 560x560 pixel, the effect of image quality to reconstruction process is evaluated by varying image processing parameters in the form of beam hardening corrections with amount of 25%, 66% and100% with each smoothing level S10,S2 and S7. To obtain the better high quality image, the adjustment of beam hardening correction should be 66% and smoothing level reach maximal value at level 10.

  17. Ramsey Interference in One-Dimensional Systems: The Full Distribution Function of Fringe Contrast as a Probe of Many-Body Dynamics

    SciTech Connect (OSTI)

    Kitagawa, Takuya; Pielawa, Susanne; Demler, Eugene [Physics Department, Harvard University, Cambridge, Massachusetts 02138 (United States); Imambekov, Adilet [Department of Physics and Astronomy, Rice University, Houston, Texas 77005 (United States); Schmiedmayer, Joerg [Atominstitut, TU-Wien, Stadionallee 2, 1020 Vienna (Austria); Gritsev, Vladimir [Physics Department, University of Fribourg, Chemin du Musee 3, 1700 Fribourg (Switzerland)

    2010-06-25

    We theoretically analyze Ramsey interference experiments in one-dimensional quasicondensates and obtain explicit expressions for the time evolution of full distribution functions of fringe contrast. We show that distribution functions contain unique signatures of the many-body mechanism of decoherence. We argue that Ramsey interference experiments provide a powerful tool for analyzing strongly correlated nature of 1D interacting systems.

  18. 2014 Earth System Grid Federation and Ultrascale Visualization Climate Data Analysis Tools Conference Report

    SciTech Connect (OSTI)

    Williams, Dean N.

    2015-01-27

    The climate and weather data science community met December 9–11, 2014, in Livermore, California, for the fourth annual Earth System Grid Federation (ESGF) and Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) Face-to-Face (F2F) Conference, hosted by the Department of Energy, National Aeronautics and Space Administration, National Oceanic and Atmospheric Administration, the European Infrastructure for the European Network of Earth System Modelling, and the Australian Department of Education. Both ESGF and UVCDATremain global collaborations committed to developing a new generation of open-source software infrastructure that provides distributed access and analysis to simulated and observed data from the climate and weather communities. The tools and infrastructure created under these international multi-agency collaborations are critical to understanding extreme weather conditions and long-term climate change. In addition, the F2F conference fosters a stronger climate and weather data science community and facilitates a stronger federated software infrastructure. The 2014 F2F conference detailed the progress of ESGF, UV-CDAT, and other community efforts over the year and sets new priorities and requirements for existing and impending national and international community projects, such as the Coupled Model Intercomparison Project Phase Six. Specifically discussed at the conference were project capabilities and enhancements needs for data distribution, analysis, visualization, hardware and network infrastructure, standards, and resources.

  19. A texture-based framework for improving CFD data visualization in a virtual environment

    SciTech Connect (OSTI)

    Gerrick O'Ron Bivins

    2005-05-05

    In the field of computational fluid dynamics (CFD) accurate representations of fluid phenomena can be simulated hut require large amounts of data to represent the flow domain. Most datasets generated from a CFD simulation can be coarse, {approx}10,000 nodes or cells, or very fine with node counts on the order of 1,000,000. A typical dataset solution can also contain multiple solutions for each node, pertaining to various properties of the flow at a particular node. Scalar properties such as density, temperature, pressure, and velocity magnitude are properties that are typically calculated and stored in a dataset solution. Solutions are not limited to just scalar properties. Vector quantities, such as velocity, are also often calculated and stored for a CFD simulation. Accessing all of this data efficiently during runtime is a key problem for visualization in an interactive application. Understanding simulation solutions requires a post-processing tool to convert the data into something more meaningful. Ideally, the application would present an interactive visual representation of the numerical data for any dataset that was simulated while maintaining the accuracy of the calculated solution. Most CFD applications currently sacrifice interactivity for accuracy, yielding highly detailed flow descriptions hut limiting interaction for investigating the field.

  20. In-Situ Visualization Experiments with ParaView Cinema in RAGE

    SciTech Connect (OSTI)

    Kares, Robert John

    2015-10-15

    A previous paper described some numerical experiments performed using the ParaView/Catalyst in-situ visualization infrastructure deployed in the Los Alamos RAGE radiation-hydrodynamics code to produce images from a running large scale 3D ICF simulation. One challenge of the in-situ approach apparent in these experiments was the difficulty of choosing parameters likes isosurface values for the visualizations to be produced from the running simulation without the benefit of prior knowledge of the simulation results and the resultant cost of recomputing in-situ generated images when parameters are chosen suboptimally. A proposed method of addressing this difficulty is to simply render multiple images at runtime with a range of possible parameter values to produce a large database of images and to provide the user with a tool for managing the resulting database of imagery. Recently, ParaView/Catalyst has been extended to include such a capability via the so-called Cinema framework. Here I describe some initial experiments with the first delivery of Cinema and make some recommendations for future extensions of Cinema’s capabilities.

  1. Adding a Visualization Feature to Web Search Engines: Its Time

    SciTech Connect (OSTI)

    Wong, Pak C.

    2008-11-11

    Since the first world wide web (WWW) search engine quietly entered our lives in 1994, the information need behind web searching has rapidly grown into a multi-billion dollar business that dominates the internet landscape, drives e-commerce traffic, propels global economy, and affects the lives of the whole human race. Todays search engines are faster, smarter, and more powerful than those released just a few years ago. With the vast investment pouring into research and development by leading web technology providers and the intense emotion behind corporate slogans such as win the web or take back the web, I cant help but ask why are we still using the very same text-only interface that was used 13 years ago to browse our search engine results pages (SERPs)? Why has the SERP interface technology lagged so far behind in the web evolution when the corresponding search technology has advanced so rapidly? In this article I explore some current SERP interface issues, suggest a simple but practical visual-based interface design approach, and argue why a visual approach can be a strong candidate for tomorrows SERP interface.

  2. In situ visualization of metallurgical reactions in nanoscale Cu/Sn diffusion couples

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Yin, Qiyue; Stach, Eric A.; Gao, Fan; Zhou, Guangwen; Gu, Zhiyong

    2015-02-10

    The Cu–Sn metallurgical soldering reaction in two-segmented Cu–Sn nanowires is visualized by in-situ transmission electron microscopy. By varying the relative lengths of Cu and Sn segments, we show that the metallurgical reaction starts at ~ 200 ° with the formation of a Cu–Sn solid solution for the Sn/Cu length ratio smaller than 1:5 while the formation of Cu–Sn intermetallic compounds (IMCs) for larger Sn/Cu length ratios. Upon heating the nanowires up to ~ 500 °C, two phase transformation pathways occur, η-Cu₆Sn₅ → ε-Cu₃Sn → δ-Cu₄₁Sn₁₁ for nanowires with a long Cu segment and η-Cu₆Sn₅ → ε-Cu₃Sn → γ-Cu₃Sn with amore » short Cu segment. The dynamic in situ TEM visualization of the evolution of Kirkendall voids demonstrates that Cu diffuses faster both in Sn and IMCs than that of Sn in Cu₃ and IMCs, which is the underlying cause of the dependence of the IMC formation and associated phase evolution on the relative lengths of the Cu and Sn segments.« less

  3. Visualization for Hyper-Heuristics. Front-End Graphical User Interface

    SciTech Connect (OSTI)

    Kroenung, Lauren

    2015-03-01

    Modern society is faced with ever more complex problems, many of which can be formulated as generate-and-test optimization problems. General-purpose optimization algorithms are not well suited for real-world scenarios where many instances of the same problem class need to be repeatedly and efficiently solved because they are not targeted to a particular scenario. Hyper-heuristics automate the design of algorithms to create a custom algorithm for a particular scenario. While such automated design has great advantages, it can often be difficult to understand exactly how a design was derived and why it should be trusted. This project aims to address these issues of usability by creating an easy-to-use graphical user interface (GUI) for hyper-heuristics to support practitioners, as well as scientific visualization of the produced automated designs. My contributions to this project are exhibited in the user-facing portion of the developed system and the detailed scientific visualizations created from back-end data.

  4. Visualization and quantification of evolving datasets. Final report: 8-1-93 - 4-30-97

    SciTech Connect (OSTI)

    Zabusky, N.; Silver, D.

    1999-07-20

    The material below is the final technical/progress report of the Laboratory for Visiometrics and Modeling (Vizlab) in visiometrics for the grant entitled Visualization and Quantification of Evolving Phenomena. This includes coordination with DOE supported scientists at Los Alamos National Laboratory (LANL) and Princeton Plasma Physics Laboratory (PPPL), and with theoretical and computational physicists at the National Institute of Fusion Science (NIFS) in Nagoya, Japan and the Institute of Laser Engineering (ILE) in Osaka, Japan. The authors research areas included: Enhancement and distribution of the DAVID environment, this is a 2D visualization environment incorporating many advanced quantifications and diagnostics useful for prediction, understanding, and reduced model formation; Feature extraction, tracking and quantification of 3D time-dependent datasets of non-linear and turbulent simulations both compressible and incompressible. This work is applicable to all 3D time-varying simulations; Visiometrics in shock-interface interactions and mixing for the Richtmyer-Meshkov (RM) environment. This work highlights reduced models for nonlinear evolutions and the role of density stratified interfaces (contact discontinuities) and has application to supernova physics, laser fusion and supersonic combustion. The collaborative projects included areas of (1) Feature extraction, tracking and quantification in 3D turbulence: compressible and incompressible; (2) Numerical Tokamak Project (NTP); (3) Data projection and reduced modeling for shock-interface interactions and mixing. (The Richtmyer-Meshkov (RM) environment relevant to laser fusion and combustion).

  5. Statistical Projections for Multi-resolution, Multi-dimensional Visual Data Exploration and Analysis

    SciTech Connect (OSTI)

    Hoa T. Nguyen; Stone, Daithi; E. Wes Bethel

    2016-01-01

    An ongoing challenge in visual exploration and analysis of large, multi-dimensional datasets is how to present useful, concise information to a user for some specific visualization tasks. Typical approaches to this problem have proposed either reduced-resolution versions of data, or projections of data, or both. These approaches still have some limitations such as consuming high computation or suffering from errors. In this work, we explore the use of a statistical metric as the basis for both projections and reduced-resolution versions of data, with a particular focus on preserving one key trait in data, namely variation. We use two different case studies to explore this idea, one that uses a synthetic dataset, and another that uses a large ensemble collection produced by an atmospheric modeling code to study long-term changes in global precipitation. The primary findings of our work are that in terms of preserving the variation signal inherent in data, that using a statistical measure more faithfully preserves this key characteristic across both multi-dimensional projections and multi-resolution representations than a methodology based upon averaging.

  6. Public Communication of Technical Issues in Today's Changing Visual Language - 12436

    SciTech Connect (OSTI)

    Hermann, Laura [Potomac Communications Group (United States)

    2012-07-01

    Communication regarding the management of radioactive materials is a well-established challenge. Residents and consumers have suspected for years that companies and governments place short-term economic concerns ahead of health and safety. This skepticism is compounded with increased attention to safety issues at nuclear power plants everywhere after Fukushima. Nonetheless, today's environment presents unexpected opportunities to transform public fear into teachable moments that bring knowledge and facts to discussions on nuclear energy. In the weeks following Japan's crisis, the lack of reliable information on radiation levels saw citizens taking to the streets with dosimeters and Geiger counters in crowd-sourced radiation monitoring efforts. Efforts, based mainly online, represent a growing set of examples of how internet and cell-phone technology are being put to use in emergency situations. The maps, graphs and tables created to meet public interest also exemplify some of the psychological priorities of audiences and present learning tools that can improve future education efforts in non-emergency situations. Industry outreach efforts often consist of technical details and quantitative data that are difficult for lay audiences to interpret. The intense attention to nuclear energy issues since last March has produced a wide array of visual samples. Citizen monitors, news organizations, government agencies and others have displayed quantitative information in innovative ways. Their efforts offer new perspective on what charts, maps and info graphics do - or need to do - to illustrate requirements, record assessments and promote understanding of nuclear-waste issues. Surveying the best examples, nuclear communicators can improve their offerings of easy-to-use, evidence-based visuals to inform stakeholders. Familiar to most communications professionals in the nuclear industry, risk communication is a science-based approach with over three decades of research evidence informing the discipline. Risk communication principles address the fact that often perception is reality. Scientific evidence for decision making must be approached differently in situations where stakeholders have high levels of concern and low levels of trust. Visual communications must take this into account to be successful. (author)

  7. The Capabilities and Limitation of Remote Visual Methods to Detect Service-Induced Cracks in Reactor Components

    SciTech Connect (OSTI)

    Cumblidge, Stephen E.; Doctor, Steven R.; Anderson, Michael T.

    2006-11-01

    Since 1977, the U.S. Nuclear Regulatory Commission (NRC) Office of Nuclear Regulatory Research has funded a multiyear program at the Pacific Northwest National Laboratory (PNNL) to evaluate the reliability and accuracy of nondestructive evaluation (NDE) techniques employed for inservice inspection (ISI). Recently, the U.S. nuclear industry proposed replacing current volumetric and/or surface examinations of certain components in commercial nuclear power plants, as required by ASME Boiler and Pressure Vessel Code Section XI, with a simpler visual testing (VT) method. The advantages of VT are that these tests generally involve much less radiation exposure and examination times than do volumetric examinations such as ultrasonic testing (UT). However, for industry to justify supplamenting volumetric metods with VT, and analysis of pertinent issues is needed to support the reliability of VT in determining the structural intefrity of reactor components. As piping and pressure vessel compoents in a nuclear power station are generally underwater and in high radiation field, they need to be examined by VT from a distance with radiation-hardened video systems. Remote visual testing has been used by nuclear utilities to find cracks in pressure vessel cladding in pressurized water reactors, for shrouds in boiling water reactors, and to investigate leaks in piping and reactor components. These visual tests are performed using a wide variety of procedures and equipment. The techniques for remote visual testing use submersible closed-circuit video cameras to examine reactor components and welds. PNNL has conducted a parametric study that examines the important variables that affect the effectiveness of a remote visual test. Tested variables include lighting techniques, camera resolution, camera movement, and magnification. PNNL has also conductrd a laboratory test using a commercial visual testing camera system to experimentally determine the ability of the camera system to detect cracks of various widths under ideal conditions.

  8. PROJECT PROFILE: Visualization and Analytics of Distribution Systems with Deep Penetration of Distributed Energy Resources (SuNLaMP)

    Broader source: Energy.gov [DOE]

    For high penetration of distributed energy resources (DER) like solar, electric power grid operators and planners must be able to incorporate large datasets from photovoltaic (PV) sources, local and line mounted precision instruments, customer load data from smart meters, and EV charging data into their analyses. This project will design and implement a platform for the visualization and analytics of distribution systems with high penetrations of distributed energy resources (VADER). VADER is a unified data analytics platform that will enable the integration of massive and varied data streams for real-time monitoring with analytics, visualization, and control of DERs in distribution networks.

  9. Cooperative Singlet and Triplet Exciton Transport in Tetracene Crystals Visualized by Ultrafast Microscopys

    SciTech Connect (OSTI)

    Wan, Yan; Guo, Zhi; Zhu, Tong; Yan, Suxia; Johnson, Justin; Huang, Libai

    2015-09-14

    Singlet fission presents an attractive solution to overcome the Shockley–Queisser limit by generating two triplet excitons from one singlet exciton. Although triplet excitons are long-lived, their transport occurs through a Dexter transfer, making them slower than singlet excitons, which travel by means of a Förster mechanism. A thorough understanding of the interplay between singlet fission and exciton transport is therefore necessary to assess the potential and challenges of singlet-fission utilization. We report a direct visualization of exciton transport in single tetracene crystals using transient absorption microscopy with 200 fs time resolution and 50 nm spatial precision. Moreover, these measurements reveal a new singlet-mediated transport mechanism for triplets, which leads to an enhancement in effective triplet exciton diffusion of more than one order of magnitude on picosecond to nanosecond timescales. These results establish that there are optimal energetics of singlet and triplet excitons that benefit both singlet fission and exciton diffusion.

  10. Development of a Visual Inspection Data Collection Tool for Evaluation of Fielded PV Module Condition

    SciTech Connect (OSTI)

    Packard, C. E.; Wohlgemuth, J. H.; Kurtz, S. R.

    2012-08-01

    A visual inspection data collection tool for the evaluation of fielded photovoltaic (PV) modules has been developed to facilitate describing the condition of PV modules with regard to field performance. The proposed data collection tool consists of 14 sections, each documenting the appearance or properties of a part of the module. This report instructs on how to use the collection tool and defines each attribute to ensure reliable and valid data collection. This tool has been evaluated through the inspection of over 60 PV modules produced by more than 20 manufacturers and fielded at two different sites for varying periods of time. Aggregated data from such a single data collection tool has the potential to enable longitudinal studies of module condition over time, technology evolution, and field location for the enhancement of module reliability models.

  11. The impact of instructions on aircraft visual inspection performance : a first look at the overall results.

    SciTech Connect (OSTI)

    Drury, Colin G.; Spencer, Floyd Wayne; Wenner, Caren A.

    2003-07-01

    The purpose of this study was to investigate the impact of instructions on aircraft visual inspection performance and strategy. Forty-two inspectors from industry were asked to perform inspections of six areas of a Boeing 737. Six different instruction versions were developed for each inspection task, varying in the number and type of directed inspections. The amount of time spent inspecting, the number of calls made, and the number of the feedback calls detected all varied widely across the inspectors. However, inspectors who used instructions with a higher number of directed inspections referred to the instructions more often during and after the task, and found a higher percentage of a selected set of feedback cracks than inspectors using other instruction versions. This suggests that specific instructions can help overall inspection performance, not just performance on the defects specified. Further, instructions were shown to change the way an inspector approaches a task.

  12. Supporting Mutual Understanding in a Visual Dialogue Between Analyst and Computer

    SciTech Connect (OSTI)

    Chappell, Alan R.; Cowell, Andrew J.; Thurman, David A.; Thomson, Judi R.

    2004-09-20

    The Knowledge Associates for Novel Intelligence (KANI) project is developing a system of automated associates to actively support and participate in the information analysis task. The primary goal of KANI is to use automatically extracted information in a reasoning system that draws on the strengths of both a human analyst and automated reasoning. The interface between the two agents is a key element in achieving this goal. The KANI interface seeks to support a visual dialogue with mixed-initiative manipulation of information and reasoning components. To be successful, the interface must achieve mutual understanding between the analyst and KANI of the others actions. Toward this mutual understanding, KANI allows the analyst to work at multiple levels of abstraction over the reasoning process, links the information presented across these levels to make use of interaction context, and provides querying facilities to allow exploration and explanation.

  13. iGlobe: An Interactive Visualization and Analysis Framework for Geospatial Data

    Energy Science and Technology Software Center (OSTI)

    2011-07-22

    The iGlobe system is a desktop-based visualization and analysis environment which allows seamless integration of multiple geospatial data sets from varied sources and provides an interface to interactively analyze the different data sets and apply sophisticated data analysis and mining algorithms in a near real time fashion. The framework is highly desirable in domains such as earth and climate sciences where great emphasis is placed on simultaneous analysis of different data sets such as remotemore » sensing images, climate model simulation outputs, and other environmental and demographic databases, to understand weather and climate systems and the impact of climate change in nature and people.« less

  14. SPOCS: Software for Predicting and Visualizing Orthology/Paralogy Relationships Among Genomes

    SciTech Connect (OSTI)

    Curtis, Darren S.; Phillips, Aaron R.; Callister, Stephen J.; Conlan, Sean; McCue, Lee Ann

    2013-10-15

    At the rate that prokaryotic genomes can now be generated, comparative genomics studies require a flexible method for quickly and accurately predicting orthologs among the rapidly changing set of genomes available. SPOCS implements a graph-based ortholog prediction method to generate a simple tab-delimited table of orthologs and in addition, html files that provide a visualization of the predicted ortholog/paralog relationships to which gene/protein expression metadata may be overlaid. AVAILABILITY AND IMPLEMENTATION: A SPOCS web application is freely available at http://cbb.pnnl.gov/portal/tools/spocs.html. Source code for Linux systems is also freely available under an open source license at http://cbb.pnnl.gov/portal/software/spocs.html; the Boost C++ libraries and BLAST are required.

  15. Direct visualization of the hydration layer on alumina nanoparticles with the fluid cell STEM in situ

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Firlar, Emre; ?nar, Simge; Kashyap, Sanjay; Akinc, Mufit; Prozorov, Tanya

    2015-05-21

    Rheological behavior of aqueous suspensions containing nanometer-sized powders is of relevance to many branches of industry. Unusually high viscosities observed for suspensions of nanoparticles compared to those of micron size powders cannot be explained by current viscosity models. Formation of so-called hydration layer on alumina nanoparticles in water was hypothesized, but never observed experimentally. We report here on the direct visualization of aqueous suspensions of alumina with the fluid cell in situ. We observe the hydration layer formed over the particle aggregates and show that such hydrated aggregates constitute new particle assemblies and affect the flow behavior of the suspensions.moreWe discuss how these hydrated nanoclusters alter the effective solid content and the viscosity of nanostructured suspensions. Our findings elucidate the source of high viscosity observed for nanoparticle suspensions and are of direct relevance to many industrial sectors including materials, food, cosmetics, pharmaceutical among others employing colloidal slurries with nanometer-scale particles.less

  16. Future Directions in Computer Graphics and Visualization: From CG&A's Editorial Board

    SciTech Connect (OSTI)

    Encarnacao, L. M.; Chuang, Yung-Yu; Stork, Andre; Kasik, David; Rhyne, Theresa-Marie; Avila, Lisa; Kohlhammer, Jorn; LaViola, Joseph; Tory, Melanie; Dill, John; Domik, Gitta; Owen, G. Scott; Wong, Pak C.

    2015-01-01

    With many new members joining the CG&A editorial board over the past year, and with a renewed commitment to not only document the state of the art in computer graphics research and applications but to anticipate and where possible foster future areas of scientific discourse and industrial practice, we asked editorial and advisory council members about where they see their fields of expertise going. The answers compiled here arent meant to be all encompassing or deterministic when it comes to the opportunities computer graphics and interactive visualization hold for the future. Instead, we aim to accomplish two things: give a more in-depth introduction of members of the editorial board to the CG&A readership and encourage cross-disciplinary discourse toward approaching, complementing, or disputing the visions laid out in this compilation.

  17. TAILORING X-RAY BEAM ENERGY SPECTRUM TO ENHANCE IMAGE QUALITY OF NEW RADIOGRAPHY CONTRAST AGENTS BASED ON GD OR OTHER LANTHANIDES.

    SciTech Connect (OSTI)

    DILMANIAN,F.A.; WEINMANN,H.J.; ZHONG,Z.; BACARIAN,T.; RIGON,L.; BUTTON,T.M.; REN,B.; WU,X.Y.; ZHONG,N.; ATKINS,H.L.

    2001-02-17

    Gadovist, a 1.0-molar Gd contrast agent from Schering AG, Berlin Germany, in use in clinical MPI in Europe, was evaluated as a radiography contrast agent. In a collaboration with Brookhaven National Laboratory (BNL), Schering AG is developing several such lanthanide-based contrast agents, while BNL evaluates them using different x-my beam energy spectra. These energy spectra include a ''truly'' monochromatic beam (0.2 keV energy bandwidth) from the National Synchrotron Light Source (NSLS), BNL, tuned above the Gd K-edge, and x-ray-tube beams from different kVp settings and beam filtrations. Radiographs of rabbits' kidneys were obtained with Gadovist at the NSLS. Furthermore, a clinical radiography system was used for imaging rabbits' kidneys comparing Gadovist and Conray, an iodinated contrast agent. The study, using 74 kVp and standard Al beam filter for Conray and 66 kVp and an additional 1.5 mm Cu beam filter for Gadovist, produced comparable images for Gadovist and Conray; the injection volumes were the same, while the radiation absorbed dose for Gadovist was slightly smaller. A bent-crystal silicon monochromator operating in the Laue diffraction mode was developed and tested with a conventional x-ray tube beam; it narrows the energy spectrum to about 4 keV around the anode tungsten's Ku line. Preliminary beam-flux results indicate that the method could be implemented in clinical CT if x-ray tubes with {approximately} twice higher output become available.

  18. The global climate for December 1990-February 1991: Strong temperature and precipitation contrasts over North America and Eurasia; mixed ENSO conditions in the tropics

    SciTech Connect (OSTI)

    Chelliah, M. )

    1993-07-01

    During most of the December 1990-February 1991 season sharp transcontinental temperature anomaly contrasts were evident in North America, Eurasia, and Australia. Large-scale atmospheric precipitations are more difficult to characterize. In the equatorial tropics there was some evidence of conditions similar to ENSO near the date line, but an almost complete failure of other ENSO components to appear in the east Pacific and in the tropical atmospheric circulation. 12 refs., 21 figs., 1 tab.

  19. Modifications in Dynamic Contrast-Enhanced Magnetic Resonance Imaging Parameters After ?-Particle-Emitting {sup 227}Th-trastuzumab Therapy of HER2-Expressing Ovarian Cancer Xenografts

    SciTech Connect (OSTI)

    Heyerdahl, Helen; Re, Kathrine; Brevik, Ellen Mengshoel; Dahle, Jostein

    2013-09-01

    Purpose: The purpose of this study was to investigate the effect of ?-particle-emitting {sup 227}Th-trastuzumab radioimmunotherapy on tumor vasculature to increase the knowledge about the mechanisms of action of {sup 227}Th-trastuzumab. Methods and Materials: Human HER2-expressing SKOV-3 ovarian cancer xenografts were grown bilaterally in athymic nude mice. Mice with tumor volumes 253 36 mm{sup 3} (mean SEM) were treated with a single injection of either {sup 227}Th-trastuzumab at a dose of 1000 kBq/kg body weight (treated group, n=14 tumors) or 0.9% NaCl (control group, n=10 tumors). Dynamic T1-weighted contrast-enhanced magnetic resonance imaging (DCEMRI) was used to study the effect of {sup 227}Th-trastuzumab on tumor vasculature. DCEMRI was performed before treatment and 1, 2, and 3 weeks after therapy. Tumor contrast-enhancement curves were extracted voxel by voxel and fitted to the Brix pharmacokinetic model. Pharmacokinetic parameters for the tumors that underwent radioimmunotherapy were compared with the corresponding parameters of control tumors. Results: Significant increases of k{sub ep}, the rate constant of diffusion from the extravascular extracellular space to the plasma (P<.05), and k{sub el,} the rate of clearance of contrast agent from the plasma (P<.01), were seen in the radioimmunotherapy group 2 and 3 weeks after injection, compared with the control group. The product of k{sub ep} and the amplitude parameter A, associated with increased vessel permeability and perfusion, was also significantly increased in the radioimmunotherapy group 2 and 3 weeks after injection (P<.01). Conclusions: Pharmacokinetic modeling of MRI contrast-enhancement curves evidenced significant alterations in parameters associated with increased tumor vessel permeability and tumor perfusion after {sup 227}Th-trastuzumab treatment of HER2-expressing ovarian cancer xenografts.

  20. New techniques for the scientific visualization of three-dimensional multi-variate and vector fields

    SciTech Connect (OSTI)

    Crawfis, R.A.

    1995-10-01

    Volume rendering allows us to represent a density cloud with ideal properties (single scattering, no self-shadowing, etc.). Scientific visualization utilizes this technique by mapping an abstract variable or property in a computer simulation to a synthetic density cloud. This thesis extends volume rendering from its limitation of isotropic density clouds to anisotropic and/or noisy density clouds. Design aspects of these techniques are discussed that aid in the comprehension of scientific information. Anisotropic volume rendering is used to represent vector based quantities in scientific visualization. Velocity and vorticity in a fluid flow, electric and magnetic waves in an electromagnetic simulation, and blood flow within the body are examples of vector based information within a computer simulation or gathered from instrumentation. Understand these fields can be crucial to understanding the overall physics or physiology. Three techniques for representing three-dimensional vector fields are presented: Line Bundles, Textured Splats and Hair Splats. These techniques are aimed at providing a high-level (qualitative) overview of the flows, offering the user a substantial amount of information with a single image or animation. Non-homogenous volume rendering is used to represent multiple variables. Computer simulations can typically have over thirty variables, which describe properties whose understanding are useful to the scientist. Trying to understand each of these separately can be time consuming. Trying to understand any cause and effect relationships between different variables can be impossible. NoiseSplats is introduced to represent two or more properties in a single volume rendering of the data. This technique is also aimed at providing a qualitative overview of the flows.

  1. Measurement of porosity in a composite high explosive as a function of pressing conditions by ultra-small-angle neutron scattering with contrast variation

    SciTech Connect (OSTI)

    Mang, Joseph Thomas; Hjelm, Rex P; Francois, Elizabeth G

    2009-01-01

    We have used ultra-small-angle neutron scattering (USANS) with contrast variation to measure the porosity (voids and binder-filled regions) in a composite high explosive, PBX 9501, formulated with a deuterated binder. Little is known about the microstructure of pressed PBX 9501 parts and thus how it is affected by processing. Here, we explore the effect of varying the pressing intensity on the PBX 9501 microstructure. Disk-shaped samples of PBX 9501 were die-pressed with applied pressures ranging between 10,000 and 29,000 psi at 90 C. Five samples were prepared at each pressure that differed in the fraction of deuterated binder, facilitating variation of the neutron scattering length density contrast ({Delta}{rho}) and thus, the resolution of microstructural details. The sample composition was determined by calculation of the Porod Invariant as a function of {Delta}{rho} and compared with compositional estimates obtained from the bulk sample density. Structural modeling of the USANS data, at different levels of contrast, assuming both spherical and cylindrical morphologies, allowed the mean size and size distribution of voids and binder-filled regions to be determined. A decrease in the mean diameter of binder-filled regions was found with increasing pressing intensity, while the mean void diameter showed no significant change.

  2. Aberration-corrected X-ray spectrum imaging and Fresnel contrast to differentiate nanoclusters and cavities in helium-irradiated alloy 14YWT

    SciTech Connect (OSTI)

    Miller, Michael K; Parish, Chad M

    2014-01-01

    Helium accumulation negatively impacts structural materials used in neutron-irradiated environments, such as fission and fusion reactors. Next-generation fission and fusion reactors will require structural materials, such as steels, resistant to large neutron doses yet see service temperatures in the range most affected by helium embrittlement. Previous work has indicated the difficulty of experimentally differentiating nanometer-sized helium bubbles from the Ti-Y-O rich nanoclustsers (NCs) in radiation-tolerant nanostructured ferritic alloys (NFAs). Because the NCs are expected to sequester helium away from grain boundaries and reduce embrittlement, experimental methods to study simultaneously the NC and bubble populations are needed. In this study, aberration-corrected scanning transmission electron microscopy (STEM) results combining high-collection-efficiency X-ray spectrum images (SIs), multivariate statistical analysis (MVSA), and Fresnel-contrast bright-field STEM imaging have been used for such a purpose. Results indicate that Fresnel-contrast imaging, with careful attention to TEM-STEM reciprocity, differentiates bubbles from NCs, and MVSA of X-ray SIs unambiguously identifies NCs. Therefore, combined Fresnel-contrast STEM and X-ray SI is an effective STEM-based method to characterize helium-bearing NFAs.

  3. Final Report: Phase II Nevada Water Resources Data, Modeling, and Visualization (DMV) Center

    SciTech Connect (OSTI)

    Jackman, Thomas; Minor, Timothy; Pohll, Gregory

    2013-07-22

    Water is unquestionably a critical resource throughout the United States. In the semi-arid west -- an area stressed by increase in human population and sprawl of the built environment -- water is the most important limiting resource. Crucially, science must understand factors that affect availability and distribution of water. To sustain growing consumptive demand, science needs to translate understanding into reliable and robust predictions of availability under weather conditions that could be average but might be extreme. These predictions are needed to support current and long-term planning. Similar to the role of weather forecast and climate prediction, water prediction over short and long temporal scales can contribute to resource strategy, governmental policy and municipal infrastructure decisions, which are arguably tied to the natural variability and unnatural change to climate. Change in seasonal and annual temperature, precipitation, snowmelt, and runoff affect the distribution of water over large temporal and spatial scales, which impact the risk of flooding and the groundwater recharge. Anthropogenic influences and impacts increase the complexity and urgency of the challenge. The goal of this project has been to develop a decision support framework of data acquisition, digital modeling, and 3D visualization. This integrated framework consists of tools for compiling, discovering and projecting our understanding of processes that control the availability and distribution of water. The framework is intended to support the analysis of the complex interactions between processes that affect water supply, from controlled availability to either scarcity or deluge. The developed framework enables DRI to promote excellence in water resource management, particularly within the Lake Tahoe basin. In principle, this framework could be replicated for other watersheds throughout the United States. Phase II of this project builds upon the research conducted during Phase I, in which the hydrologic framework was investigated and the development initiated. Phase II concentrates on practical implementation of the earlier work but emphasizes applications to the hydrology of the Lake Tahoe basin. Phase 1 efforts have been refined and extended by creating a toolset for geographic information systems (GIS) that is usable for disparate types of geospatial and geo-referenced data. The toolset is intended to serve multiple users for a variety of applications. The web portal for internet access to hydrologic and remotely sensed product data, prototyped in Phase I, has been significantly enhanced. The portal provides high performance access to LANDSAT-derived data using techniques developed during the course of the project. The portal is interactive, and supports the geo-referenced display of hydrologic information derived from remotely sensed data, such as various vegetative indices used to calculate water consumption. The platform can serve both internal and external constituencies using inter-operating infrastructure that spans both sides of the DRI firewall. The platform is intended grow its supported data assets and to serve as a template for replication to other geographic areas. An unanticipated development during the project was the use of ArcGIS software on a new computer system, called the IBM PureSytems, and the parallel use of the systems for faster, more efficient image processing. Additional data, independent of the portal, was collected within the Sagehen basin and provides detailed information regarding the processes that control hydrologic responses within mountain watersheds. The newly collected data include elevation, evapotranspiration, energy balance and remotely sensed snow-pack data. A Lake Tahoe basin hydrologic model has been developed, in part to help predict the hydrologic impacts of climate change. The model couples both the surface and subsurface hydrology, with the two components having been independently calibrated. Results from the coupled simulations involving both surface water and groundwater processes show that it is possible to fairly accurately simulate lake effects and water budget variables over a wide range of dry and wet cycles in the historical record. The Lake Tahoe basin is representative of the hydrology, topography and climate throughout the Sierra Nevada Range, and the entire model development is prototypical of the efforts required to replicate the decision support framework to other locales. The Lake Tahoe model in particular, could allow water managers to evaluate more accurately components of the water budget (ET, runoff, groundwater, etc) and to answer important questions regarding water resources in northern Nevada. This report discusses the geographic scale and the hydrologic complexity of the calibrated model developed as part of this project, as well as simulation results for historical and future climate projects To enable human-driven data exploration and discovery, de novo software for a globalized rendering module that extends the capability of our evolving custom visualization engine from Phase I (called SMEngine) has been developed. The new rendering component, called Horizon, supports terrain rendering capable of displaying and interrogating both remotely sensed and modeled data. The development of Horizon necessitated adaptation of the visualization engine to allow extensible integration of components such as the global rendering module and support for associated features. The resulting software is general in its GIS capability, but a specific Lake Tahoe visualization application suitable for immersive decision support in the DRIVE6 virtual reality facility has been developed. During the development, various features to enhance the value of the visualization experience were explored, including the use of hyperspectral image overlays. An over-arching goal of the visualization aspect of the project has been to develop and demonstrate the CAVE (CAVE Automatic Virtual Environment) as a practical tool for hydrologic research.

  4. Climatepipes: User-friendly data access, data manipulation, data analysis and visualization of community climate models Phase II

    SciTech Connect (OSTI)

    Chaudhary, Aashish

    2015-09-02

    In Phase I, we successfully developed a web-based tool that provides workflow and form-based interfaces for accessing, querying, and visualizing interesting datasets from one or more sources. For Phase II of the project, we have implemented mechanisms for supporting more elaborate and relevant queries.

  5. Processing of microencapsulated dyes for the visual inspection of fibre reinforced plastics

    SciTech Connect (OSTI)

    Hopmann, Ch., E-mail: kerschbaum@ikv.rwth-aachen.de; Kerschbaum, M., E-mail: kerschbaum@ikv.rwth-aachen.de; Ksters, K., E-mail: kerschbaum@ikv.rwth-aachen.de [Institute of Plastics Processing at RWTH Aachen University (IKV), Pontstrasse 49, 52064 Aachen (Germany)

    2014-05-15

    The evaluation of damages caused during processing, assembly or usage of fibre reinforced plastics is still a challenge. The use of inspection technology like ultrasonic scanning enables a detailed damage analysis but requires high investments and trained staff. Therefore, the visual inspection method is widely used. A drawback of this method is the difficult identification of barely visible damages, which can already be detrimental for the structural integrity. Therefore an approach is undertaken to integrate microencapsulated dyes into the laminates of fibre reinforced plastic parts to highlight damages on the surface. In case of a damage, the microcapsules rupture which leads to a release of the dye and a visible bruise on the part surface. To enable a wide application spectrum for this technology the microcapsules must be processable without rupturing with established manufacturing processes for fibre reinforced plastics. Therefore the incorporation of microcapsules in the filament winding, prepreg autoclave and resin transfer moulding (RTM) process is investigated. The results show that the use of a carrier medium is a feasible way to incorporate the microcapsules into the laminate for all investigated manufacturing processes. Impact testing of these laminates shows a bruise formation on the specimen surface which correlates with the impact energy level. This indicates a microcapsule survival during processing and shows the potential of this technology for damage detection and characterization.

  6. Visualization and functional dissection of coaxial paired SpoIIIE channels across the sporulation septum

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Shin, Jae Yen; Lopez-Garrido, Javier; Lee, Sang-Hyuk; Diaz-Celis, Cesar; Fleming, Tinya; Bustamante, Carlos; Pogliano, Kit

    2015-05-07

    SpoIIIE is a membrane-anchored DNA translocase that localizes to the septal midpoint to mediate chromosome translocation and membrane fission during Bacillus subtilis sporulation. Here we use cell-specific protein degradation and quantitative photoactivated localization microscopy in strains with a thick sporulation septum to investigate the architecture and function of the SpoIIIE DNA translocation complex in vivo. We were able to visualize SpoIIIE complexes with approximately equal numbers of molecules in the mother cell and the forespore. Cell-specific protein degradation showed that only the mother cell complex is required to translocate DNA into the forespore, whereas degradation in either cell reversesmore » membrane fission. Our data suggest that SpoIIIE assembles a coaxially paired channel for each chromosome arm comprised of one hexamer in each cell to maintain membrane fission during DNA translocation. We show that SpoIIIE can operate, in principle, as a bi-directional motor that exports DNA.« less

  7. Visualization of expanding warm dense gold and diamond heated rapidly by laser-generated ion beams

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Bang, W.; Albright, B. J.; Bradley, P. A.; Gautier, D. C.; Palaniyappan, S.; Vold, E. L.; Cordoba, M. A. Santiago; Hamilton, C. E.; Fernández, J. C.

    2015-09-22

    With the development of several novel heating sources, scientists can now heat a small sample isochorically above 10,000 K. Although matter at such an extreme state, known as warm dense matter, is commonly found in astrophysics (e.g., in planetary cores) as well as in high energy density physics experiments, its properties are not well understood and are difficult to predict theoretically. This is because the approximations made to describe condensed matter or high-temperature plasmas are invalid in this intermediate regime. A sufficiently large warm dense matter sample that is uniformly heated would be ideal for these studies, but has beenmore » unavailable to date. We have used a beam of quasi-monoenergetic aluminum ions to heat gold and diamond foils uniformly and isochorically. For the first time, we visualized directly the expanding warm dense gold and diamond with an optical streak camera. Furthermore, we present a new technique to determine the initial temperature of these heated samples from the measured expansion speeds of gold and diamond into vacuum. We anticipate the uniformly heated solid density target will allow for direct quantitative measurements of equation-of-state, conductivity, opacity, and stopping power of warm dense matter, benefiting plasma physics, astrophysics, and nuclear physics.« less

  8. Visualization of expanding warm dense gold and diamond heated rapidly by laser-generated ion beams

    SciTech Connect (OSTI)

    Bang, W.; Albright, B. J.; Bradley, P. A.; Gautier, D. C.; Palaniyappan, S.; Vold, E. L.; Cordoba, M. A. Santiago; Hamilton, C. E.; Fernández, J. C.

    2015-09-22

    With the development of several novel heating sources, scientists can now heat a small sample isochorically above 10,000 K. Although matter at such an extreme state, known as warm dense matter, is commonly found in astrophysics (e.g., in planetary cores) as well as in high energy density physics experiments, its properties are not well understood and are difficult to predict theoretically. This is because the approximations made to describe condensed matter or high-temperature plasmas are invalid in this intermediate regime. A sufficiently large warm dense matter sample that is uniformly heated would be ideal for these studies, but has been unavailable to date. We have used a beam of quasi-monoenergetic aluminum ions to heat gold and diamond foils uniformly and isochorically. For the first time, we visualized directly the expanding warm dense gold and diamond with an optical streak camera. Furthermore, we present a new technique to determine the initial temperature of these heated samples from the measured expansion speeds of gold and diamond into vacuum. We anticipate the uniformly heated solid density target will allow for direct quantitative measurements of equation-of-state, conductivity, opacity, and stopping power of warm dense matter, benefiting plasma physics, astrophysics, and nuclear physics.

  9. Direct visualization of the hydration layer on alumina nanoparticles with the fluid cell STEM in situ

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Firlar, Emre; Çınar, Simge; Kashyap, Sanjay; Akinc, Mufit; Prozorov, Tanya

    2015-05-21

    Rheological behavior of aqueous suspensions containing nanometer-sized powders is of relevance to many branches of industry. Unusually high viscosities observed for suspensions of nanoparticles compared to those of micron size powders cannot be explained by current viscosity models. Formation of so-called hydration layer on alumina nanoparticles in water was hypothesized, but never observed experimentally. We report here on the direct visualization of aqueous suspensions of alumina with the fluid cell in situ. We observe the hydration layer formed over the particle aggregates and show that such hydrated aggregates constitute new particle assemblies and affect the flow behavior of the suspensions.more » We discuss how these hydrated nanoclusters alter the effective solid content and the viscosity of nanostructured suspensions. As a result, our findings elucidate the source of high viscosity observed for nanoparticle suspensions and are of direct relevance to many industrial sectors including materials, food, cosmetics, pharmaceutical among others employing colloidal slurries with nanometer-scale particles.« less

  10. Visualization of Solution Gas Drive in Viscous Oil, SUPRI TR-126

    SciTech Connect (OSTI)

    George, D.S.; Kovscek, A.R.

    2001-07-23

    Several experimental studies of solution gas drive are available in this report. Almost all of the studies have used light oil. Solution gas drive behavior, especially in heavy oil reservoirs, is poorly understood. Experiments were performed in which pore-scale solution gas drive phenomena were viewed in water/carbon dioxide and viscous oil/carbon dioxide systems. A new pressure vessel was designed and constructed to house silicon-wafer micromodels that previously operated at low (<3 atm) pressure. The new apparatus is used for the visual studies. Several interesting phenomena were viewed. The repeated nucleation of gas bubbles was observed at a gas-wet site occupied by dirt. Interestingly, the dissolution of a gas bubble into the liquid phase was previously recorded at the same nucleation site. Gas bubbles in both systems grew to span one ore more pore bodies before mobilization. Liquid viscosity affected the ease with which gas bubbles coalesced. More viscous solutions result in slower rates of coalescence. The transport of solid particles on gas-liquid interfaces was also observed.

  11. Effects of the 1990 Clean Air Act amendments on distributions of visual impairment

    SciTech Connect (OSTI)

    Shannon, J.D.; Camp, J.; Trexler, E.C. Jr.

    1996-02-01

    The Acid Rain Provisions (Title IV) of the 1990 Clean Air Act Amendments (1990 CAAA) focus on emission policies designed to reduce the amount of deposition of acidifying pollutants, particularly in the Northeast. The primary strategy is a significant reduction in SO{sub 2} emissions, with lesser reductions scheduled for NO{sub {times}} emissions. However, lessening of acid deposition is not the only important benefit of the emission control strategy. Decreasing SO{sup {minus}} and NO {sup {minus}} emissions will decrease atmospheric concentrations of sulfate and nitrate particles, which account for much of the visibility reduction associated with regional haze. Although one can get a qualitative sense of how visibility might improve by examining historical large-scale trends in regional emission totals and regional visibility, quantification of the expected improvement requires model simulations. One must model the spatial and temporal patterns of emissions reductions; the relevant pollutant transport, transformation, and removal processes in the atmosphere; and the changes in particulate loading. For this initial examination of the visibility improvement at Shenandoah National Park associated the the Phase I and Phase II SO{sub 2} emission reductions, we have linked emission trend projections taken from ongoing analysis of the 1990 CAAA at Argonne National Laboratory, regional transport modeling with the Advanced Statistical Trajectory Regional Air Pollution (ASTRAP) model and visual impairment modeling with the Visibility Assessment Scoping Model (VASM).

  12. Aerodynamic pressure and flow-visualization measurement from a rotating wind turbine blade

    SciTech Connect (OSTI)

    Butterfield, C.P.

    1988-11-01

    Aerodynamic, load, flow-visualization, and inflow measurements have been made on a 10-m, three-bladed, downwind, horizontal-axis wind turbine (HAWT). A video camera mounted on the rotor was used to record nighttime and daytime video images of tufts attached to the low-pressure side of a constant-chord, zero-twist blade. Load measurements were made using strain gages mounted at every 10% of the blade's span. Pressure measurements were made at 80% of the blade's span. Pressure taps were located at 32 chordwise positions, revealing pressure distributions comparable with wind tunnel data. Inflow was measured using a vertical-plane array of eight propvane and five triaxial (U-V-W) prop-type anemometers located 10 m upwind in the predominant wind direction. One objective of this comprehensive research program was to study the effects of blade rotation on aerodynamic behavior below, near, and beyond stall. To this end, flow patterns are presented here that reveal the dynamic and steady behavior of flow conditions on the blade. Pressure distributions are compared to flow patterns and two-dimensional wind tunnel data. Separation boundary locations are shown that change as a function of spanwise location, pitch angle, and wind speed. 6 refs., 23 figs., 1 tab.

  13. Novel Visual and Analytical Methods in Repurposing Legacy Scientific Code - A Case Study

    SciTech Connect (OSTI)

    Oehmen, Christopher S.; Curtis, Darren S.; Phillips, Aaron R.; Peterson, Elena S.

    2013-07-23

    Scientific computing is dominated by team-authored legacy code that has evolved over decades with the purpose of capturing the evolving understanding of a scientific discipline. Accumulated deprecated code, various optimization techniques, and evolving algorithms lead to convoluted source code that is impractical to reverse engineer using mainstream methods. This prevents codes from being truly repeatable or understandable, which are two of the most essential needs in scientific computing. We refactored a long-standing implementation of a common biosequence alignment algorithm in an effort to reproduce its salient behaviors in usable form. Because of the sheer size and complexity of this code base, we developed custom tools to visualize and manipulate the source code behavior under a variety of conditions. We present a case study of extracting and refactoring the algorithmic core and a novel process of discovery/prototyping/testing using a combination of openly available and custom-built tools. The result is a reduction in code size of over 2 orders of magnitude while reconstructing the key protein alignment function in BLAST

  14. Spatial Heterogeneity and Imperfect Mixing in Chemical Reactions: Visualization of Density-Driven Pattern Formation

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Sobel, Sabrina G.; Hastings, Harold M.; Testa, Matthew

    2009-01-01

    Imore » mperfect mixing is a concern in industrial processes, everyday processes (mixing paint, bread machines), and in understanding salt water-fresh water mixing in ecosystems. The effects of imperfect mixing become evident in the unstirred ferroin-catalyzed Belousov-Zhabotinsky reaction, the prototype for chemical pattern formation. Over time, waves of oxidation (high ferriin concentration, blue) propagate into a background of low ferriin concentration (red); their structure reflects in part the history of mixing in the reaction vessel. However, it may be difficult to separate mixing effects from reaction effects. We describe a simpler model system for visualizing density-driven pattern formation in an essentially unmixed chemical system: the reaction of pale yellow Fe 3 + with colorless SCN − to form the blood-red Fe ( SCN ) 2 + complex ion in aqueous solution. Careful addition of one drop of Fe ( NO 3 ) 3 to KSCN yields striped patterns after several minutes. The patterns appear reminiscent of Rayleigh-Taylor instabilities and convection rolls, arguing that pattern formation is caused by density-driven mixing.« less

  15. The visual and radiological inspection of a pipeline using a teleoperated pipe crawler

    SciTech Connect (OSTI)

    Fogle, R.F.; Kuelske, K.; Kellner, R.

    1995-01-01

    In the 1950s, the Savannah River Site built an open, unlined retention basin to temporarily store potentially radionuclide contaminated cooling water from a chemical separations process and storm water drainage from a nearby waste management facility that stored large quantities of nuclear fission byproducts in carbon steel tanks. The retention basin was retired from service in 1972 when a new, lined basin was completed. In 1978, the old retention basin was excavated, backfilled with uncontaminated dirt, and covered with grass. At the same time, much of the underground process pipeline leading to the basin was abandoned. Since the closure of the retention basin, new environmental regulations require that the basin undergo further assessment to determine whether additional remediation is required. A visual and radiological inspection of the pipeline was necessary to aid in the remediation decision making process for the retention basin system. A teleoperated pipe crawler inspection system was developed to survey the abandoned sections of underground pipelines leading to the retired retention basin. This paper will describe the background to this project, the scope of the investigation, the equipment requirements, and the results of the pipeline inspection.

  16. New tools for the systematic analysis and visualization of electronic excitations. I. Formalism

    SciTech Connect (OSTI)

    Plasser, Felix Wormit, Michael; Dreuw, Andreas

    2014-07-14

    A variety of density matrix based methods for the analysis and visualization of electronic excitations are discussed and their implementation within the framework of the algebraic diagrammatic construction of the polarization propagator is reported. Their mathematical expressions are given and an extensive phenomenological discussion is provided to aid the interpretation of the results. Starting from several standard procedures, e.g., population analysis, natural orbital decomposition, and density plotting, we proceed to more advanced concepts of natural transition orbitals and attachment/detachment densities. In addition, special focus is laid on information coded in the transition density matrix and its phenomenological analysis in terms of an electron-hole picture. Taking advantage of both the orbital and real space representations of the density matrices, the physical information in these analysis methods is outlined, and similarities and differences between the approaches are highlighted. Moreover, new analysis tools for excited states are introduced including state averaged natural transition orbitals, which give a compact description of a number of states simultaneously, and natural difference orbitals (defined as the eigenvectors of the difference density matrix), which reveal details about orbital relaxation effects.

  17. The moving group targets of the seeds high-contrast imaging survey of exoplanets and disks: Results and observations from the first three years

    SciTech Connect (OSTI)

    Brandt, Timothy D.; Turner, Edwin L.; Janson, M.; Knapp, G. R.; Kuzuhara, Masayuki; McElwain, Michael W.; Schlieder, Joshua E.; Carson, J.; Biller, B.; Bonnefoy, M.; Brandner, W.; Wisniewski, John P.; Hashimoto, J.; Matsuo, T.; Dressing, C.; Moro-Martn, A.; Kudo, T.; Kusakabe, N.; Abe, L.; and others

    2014-05-01

    We present results from the first three years of observations of moving group (MG) targets in the Strategic Exploration of Exoplanets and Disks with Subaru (SEEDS) high-contrast imaging survey of exoplanets and disks using the Subaru telescope. We achieve typical contrasts of ?10{sup 5} at 1'' and ?10{sup 6} beyond 2'' around 63 proposed members of nearby kinematic MGs. We review each of the kinematic associations to which our targets belong, concluding that five, ? Pictoris (?20 Myr), AB Doradus (?100 Myr), Columba (?30 Myr), Tucana-Horogium (?30 Myr), and TW Hydrae (?10 Myr), are sufficiently well-defined to constrain the ages of individual targets. Somewhat less than half of our targets are high-probability members of one of these MGs. For all of our targets, we combine proposed MG membership with other age indicators where available, including Ca II HK emission, X-ray activity, and rotation period, to produce a posterior probability distribution of age. SEEDS observations discovered a substellar companion to one of our targets, ? And, a late B star. We do not detect any other substellar companions, but do find seven new close binary systems, of which one still needs to be confirmed. A detailed analysis of the statistics of this sample, and of the companion mass constraints given our age probability distributions and exoplanet cooling models, will be presented in a forthcoming paper.

  18. Capillary test specimen, system, and methods for in-situ visualization of capillary flow and fillet formation

    DOE Patents [OSTI]

    Hall, Aaron C.; Hosking, F. Michael ,; Reece, Mark

    2003-06-24

    A capillary test specimen, method, and system for visualizing and quantifying capillary flow of liquids under realistic conditions, including polymer underfilling, injection molding, soldering, brazing, and casting. The capillary test specimen simulates complex joint geometries and has an open cross-section to permit easy visual access from the side. A high-speed, high-magnification camera system records the location and shape of the moving liquid front in real-time, in-situ as it flows out of a source cavity, through an open capillary channel between two surfaces having a controlled capillary gap, and into an open fillet cavity, where it subsequently forms a fillet on free surfaces that have been configured to simulate realistic joint geometries. Electric resistance heating rapidly heats the test specimen, without using a furnace. Image-processing software analyzes the recorded images and calculates the velocity of the moving liquid front, fillet contact angles, and shape of the fillet's meniscus, among other parameters.

  19. Visualization of the operational space of edge-localized modes through low-dimensional embedding of probability distributions

    SciTech Connect (OSTI)

    Shabbir, A. Noterdaeme, J. M.; Verdoolaege, G.; Kardaun, O. J. W. F.; Collaboration: JET-EFDA Team

    2014-11-15

    Information visualization aimed at facilitating human perception is an important tool for the interpretation of experiments on the basis of complex multidimensional data characterizing the operational space of fusion devices. This work describes a method for visualizing the operational space on a two-dimensional map and applies it to the discrimination of type I and type III edge-localized modes (ELMs) from a series of carbon-wall ELMy discharges at JET. The approach accounts for stochastic uncertainties that play an important role in fusion data sets, by modeling measurements with probability distributions in a metric space. The method is aimed at contributing to physical understanding of ELMs as well as their control. Furthermore, it is a general method that can be applied to the modeling of various other plasma phenomena as well.

  20. A Pervasive Parallel Processing Framework For Data Visualization And Analysis At Extreme Scale Final Scientific and Technical Report

    SciTech Connect (OSTI)

    Geveci, Berk

    2014-10-31

    The evolution of the computing world from teraflop to petaflop has been relatively effortless,with several of the existing programming models scaling effectively to the petascale. The migration to exascale, however, poses considerable challenges. All industry trends infer that the exascale machine will be built using processors containing hundreds to thousands of cores per chip. It can be inferred that efficient concurrency on exascale machines requires a massive amount of concurrent threads, each performing many operations on a localized piece of data. Currently, visualization libraries and applications are based off what is known as the visualization pipeline. In the pipeline model, algorithms are encapsulated as filters with inputs and outputs. These filters are connected by setting the output of one component to the input of another. Parallelism in the visualization pipeline is achieved by replicating the pipeline for each processing thread. This works well for today’s distributed memory parallel computers but cannot be sustained when operating on processors with thousands of cores. Our project investigates a new visualization framework designed to exhibit the pervasive parallelism necessary for extreme scale machines. Our framework achieves this by defining algorithms in terms of worklets, which are localized stateless operations. Worklets are atomic operations that execute when invoked unlike filters, which execute when a pipeline request occurs. The worklet design allows execution on a massive amount of lightweight threads with minimal overhead. Only with such fine-grained parallelism can we hope to fill the billions of threads we expect will be necessary for efficient computation on an exascale machine.

  1. Double-Shell Tank Visual Inspection Changes Resulting from the Tank 241-AY-102 Primary Tank Leak

    SciTech Connect (OSTI)

    Girardot, Crystal L.; Washenfelder, Dennis J.; Johnson, Jeremy M.; Engeman, Jason K.

    2013-11-14

    As part of the Double-Shell Tank (DST) Integrity Program, remote visual inspections are utilized to perform qualitative in-service inspections of the DSTs in order to provide a general overview of the condition of the tanks. During routine visual inspections of tank 241-AY-102 (AY-102) in August 2012, anomalies were identified on the annulus floor which resulted in further evaluations. In October 2012, Washington River Protection Solutions, LLC determined that the primary tank of AY-102 was leaking. Following identification of the tank AY-102 probable leak cause, evaluations considered the adequacy of the existing annulus inspection frequency with respect to the circumstances of the tank AY-102 1eak and the advancing age of the DST structures. The evaluations concluded that the interval between annulus inspections should be shortened for all DSTs, and each annulus inspection should cover > 95 percent of annulus floor area, and the portion of the primary tank (i.e., dome, sidewall, lower knuckle, and insulating refractory) that is visible from the annulus inspection risers. In March 2013, enhanced visual inspections were performed for the six oldest tanks: 241-AY-101, 241-AZ-101,241-AZ-102, 241-SY-101, 241-SY-102, and 241-SY-103, and no evidence of leakage from the primary tank were observed. Prior to October 2012, the approach for conducting visual examinations of DSTs was to perform a video examination of each tank's interior and annulus regions approximately every five years (not to exceed seven years between inspections). Also, the annulus inspection only covered about 42 percent of the annulus floor.

  2. Data Products from W.A.V.E.S: Web-Accessible Visualization and Extraction System (CDIAC)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    W.A.V.E.S. stands for the Web-Accessible Visualization and Extraction System. Implemented in 2007, this specialized data interface allows users to search for ocean carbon data and receive on screen tables of data, data plots, or data files to download. An interactive map assists in the search, which has many customized search and output parameters. Both discrete data and underway data from ships' cruises are available for search.

  3. Exploratory Nuclear Reactor Safety Analysis and Visualization via Integrated Topological and Geometric Techniques

    SciTech Connect (OSTI)

    Dan Maljovec; Bei Wang; Valerio Pascucci; Peer-Timo Bremer; Diego Mandelli; Michael Pernice; Robert Nourgaliev

    2013-10-01

    A recent trend in the nuclear power engineering field is the implementation of heavily computational and time consuming algorithms and codes for both design and safety analysis. In particular, the new generation of system analysis codes aim to embrace several phenomena such as thermo-hydraulic, structural behavior, and system dynamics, as well as uncertainty quantification and sensitivity analyses. The use of dynamic probabilistic risk assessment (PRA) methodologies allows a systematic approach to uncertainty quantification. Dynamic methodologies in PRA account for possible coupling between triggered or stochastic events through explicit consideration of the time element in system evolution, often through the use of dynamic system models (simulators). They are usually needed when the system has more than one failure mode, control loops, and/or hardware/process/software/human interaction. Dynamic methodologies are also capable of modeling the consequences of epistemic and aleatory uncertainties. The Monte-Carlo (MC) and the Dynamic Event Tree (DET) approaches belong to this new class of dynamic PRA methodologies. The major challenges in using MC and DET methodologies (as well as other dynamic methodologies) are the heavier computational and memory requirements compared to the classical ET analysis. This is due to the fact that each branch generated can contain time evolutions of a large number of variables (about 50,000 data channels are typically present in RELAP) and a large number of scenarios can be generated from a single initiating event (possibly on the order of hundreds or even thousands). Such large amounts of information are usually very difficult to organize in order to identify the main trends in scenario evolutions and the main risk contributors for each initiating event. This report aims to improve Dynamic PRA methodologies by tackling the two challenges mentioned above using: 1) adaptive sampling techniques to reduce computational cost of the analysis and 2) topology-based methodologies to interactively visualize multidimensional data and extract risk-informed insights. Regarding item 1) we employ learning algorithms that aim to infer/predict simulation outcome and decide the coordinate in the input space of the next sample that maximize the amount of information that can be gained from it. Such methodologies can be used to both explore and exploit the input space. The later one is especially used for safety analysis scopes to focus samples along the limit surface, i.e. the boundaries in the input space between system failure and system success. Regarding item 2) we present a software tool that is designed to analyze multi-dimensional data. We model a large-scale nuclear simulation dataset as a high-dimensional scalar function defined over a discrete sample of the domain. First, we provide structural analysis of such a function at multiple scales and provide insight into the relationship between the input parameters and the output. Second, we enable exploratory analysis for users, where we help the users to differentiate features from noise through multi-scale analysis on an interactive platform, based on domain knowledge and data characterization. Our analysis is performed by exploiting the topological and geometric properties of the domain, building statistical models based on its topological segmentations and providing interactive visual interfaces to facilitate such explorations.

  4. A framework for graph-based synthesis, analysis, and visualization of HPC cluster job data.

    SciTech Connect (OSTI)

    Mayo, Jackson R.; Kegelmeyer, W. Philip, Jr.; Wong, Matthew H.; Pebay, Philippe Pierre; Gentile, Ann C.; Thompson, David C.; Roe, Diana C.; De Sapio, Vincent; Brandt, James M.

    2010-08-01

    The monitoring and system analysis of high performance computing (HPC) clusters is of increasing importance to the HPC community. Analysis of HPC job data can be used to characterize system usage and diagnose and examine failure modes and their effects. This analysis is not straightforward, however, due to the complex relationships that exist between jobs. These relationships are based on a number of factors, including shared compute nodes between jobs, proximity of jobs in time, etc. Graph-based techniques represent an approach that is particularly well suited to this problem, and provide an effective technique for discovering important relationships in job queuing and execution data. The efficacy of these techniques is rooted in the use of a semantic graph as a knowledge representation tool. In a semantic graph job data, represented in a combination of numerical and textual forms, can be flexibly processed into edges, with corresponding weights, expressing relationships between jobs, nodes, users, and other relevant entities. This graph-based representation permits formal manipulation by a number of analysis algorithms. This report presents a methodology and software implementation that leverages semantic graph-based techniques for the system-level monitoring and analysis of HPC clusters based on job queuing and execution data. Ontology development and graph synthesis is discussed with respect to the domain of HPC job data. The framework developed automates the synthesis of graphs from a database of job information. It also provides a front end, enabling visualization of the synthesized graphs. Additionally, an analysis engine is incorporated that provides performance analysis, graph-based clustering, and failure prediction capabilities for HPC systems.

  5. TU-F-18C-02: Increasing Amorphous Selenium Thickness in Direct Conversion Flat-Panel Imagers for Contrast-Enhanced Dual-Energy Breast Imaging

    SciTech Connect (OSTI)

    Scaduto, DA; Hu, Y-H; Zhao, W

    2014-06-15

    Purpose: Contrast-enhanced (CE) breast imaging using iodinated contrast agents requires imaging with x-ray spectra at energies greater than those used in mammography. Optimizing amorphous selenium (a-Se) flat panel imagers (FPI) for this higher energy range may increase lesion conspicuity. Methods: We compare imaging performance of a conventional FPI with 200 μm a-Se conversion layer to a prototype FPI with 300 μm a-Se layer. Both detectors are evaluated in a Siemens MAMMOMAT Inspiration prototype digital breast tomosynthesis (DBT) system using low-energy (W/Rh 28 kVp) and high-energy (W/Cu 49 kVp) x-ray spectra. Detectability of iodinated lesions in dual-energy images is evaluated using an iodine contrast phantom. Effects of beam obliquity are investigated in projection and reconstructed images using different reconstruction methods. The ideal observer signal-to-noise ratio is used as a figure-of-merit to predict the optimal a-Se thickness for CE lesion detectability without compromising conventional full-field digital mammography (FFDM) and DBT performance. Results: Increasing a-Se thickness from 200 μm to 300 μm preserves imaging performance at typical mammographic energies (e.g. W/Rh 28 kVp), and improves the detective quantum efficiency (DQE) for high energy (W/Cu 49 kVp) by 30%. While the more penetrating high-energy x-ray photons increase geometric blur due to beam obliquity in the FPI with thicker a-Se layer, the effect on lesion detectability in FBP reconstructions is negligible due to the reconstruction filters employed. Ideal observer SNR for CE objects shows improvements in in-plane detectability with increasing a-Se thicknesses, though small lesion detectability begins to degrade in oblique projections for a-Se thickness above 500 μm. Conclusion: Increasing a-Se thickness in direct conversion FPI from 200 μm to 300 μm improves lesion detectability in CE breast imaging with virtually no cost to conventional FFDM and DBT. This work was partially supported by a research grant from Siemens Healthcare.

  6. SU-E-QI-21: Iodinated Contrast Agent Time Course In Human Brain Metastasis: A Study For Stereotactic Synchrotron Radiotherapy Clinical Trials

    SciTech Connect (OSTI)

    Obeid, L; Esteve, F; Adam, J; Tessier, A; Balosso, J

    2014-06-15

    Purpose: Synchrotron stereotactic radiotherapy (SSRT) is an innovative treatment combining the selective accumulation of heavy elements in tumors with stereotactic irradiations using monochromatic medium energy x-rays from a synchrotron source. Phase I/II clinical trials on brain metastasis are underway using venous infusion of iodinated contrast agents. The radiation dose enhancement depends on the amount of iodine in the tumor and its time course. In the present study, the reproducibility of iodine concentrations between the CT planning scan day (Day 0) and the treatment day (Day 10) was assessed in order to predict dose errors. Methods: For each of days 0 and 10, three patients received a biphasic intravenous injection of iodinated contrast agent (40 ml, 4 ml/s, followed by 160 ml, 0.5 ml/s) in order to ensure stable intra-tumoral amounts of iodine during the treatment. Two volumetric CT scans (before and after iodine injection) and a multi-slice dynamic CT of the brain were performed using conventional radiotherapy CT (Day 0) or quantitative synchrotron radiation CT (Day 10). A 3D rigid registration was processed between images. The absolute and relative differences of absolute iodine concentrations and their corresponding dose errors were evaluated in the GTV and PTV used for treatment planning. Results: The differences in iodine concentrations remained within the standard deviation limits. The 3D absolute differences followed a normal distribution centered at zero mg/ml with a variance (∼1 mg/ml) which is related to the image noise. Conclusion: The results suggest that dose errors depend only on the image noise. This study shows that stable amounts of iodine are achievable in brain metastasis for SSRT treatment in a 10 days interval.

  7. Working Together to Reduce Our Environmental Footprint

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    computers, cell phones, TVs, printers, VCRs, cameras, and unwanted personally-owned electronic equipment. THURSDAY April 23 12:00 P.M. - 1:00 P.M. * Seasonal Landscapes at...

  8. appl_household2001.pdf

    U.S. Energy Information Administration (EIA) Indexed Site

    ... Both ...... 1.9 0.8 0.5 Q Q 27.0 Video Cassette Recorders (VCRs) and DVD Players ...... 96.1 34.6 18.4 ...

  9. appl_household2001.pdf

    U.S. Energy Information Administration (EIA) Indexed Site

    ... Both ...... 1.9 0.5 0.4 Q 19.8 Video Cassette Recorders (VCRs) and DVD Players ...... 96.1 22.5 15.6 ...

  10. appl_household2001.pdf

    U.S. Energy Information Administration (EIA) Indexed Site

    ... Both ...... 1.9 0.3 Q 0.2 27.2 Video Cassette Recorders (VCRs) and DVD Players ...... 96.1 21.0 6.1 ...

  11. appl_household2001.pdf

    U.S. Energy Information Administration (EIA) Indexed Site

    ... 12.2 Both ...... 1.9 0.2 Q Q 35.2 Video Cassette Recorders (VCRs) and DVD Players ...... 96.1 18.0 13.3 ...

  12. appl_household2001.pdf

    U.S. Energy Information Administration (EIA) Indexed Site

    ... ...... 1.9 0.7 0.4 0.4 0.3 22.1 Video Cassette Recorders (VCRs) and DVD Players ...... 96.1 44.9 15.5 ...

  13. appl_household2001.pdf

    U.S. Energy Information Administration (EIA) Indexed Site

    ... Both ...... 1.9 Q 0.2 Q 0.4 24.5 Video Cassette Recorders (VCRs) and DVD Players ...... 96.1 6.3 11.4 6.7 ...

  14. Wireless Self-powered Visual and NDE Robotic Inspection System for Live Gas Distribution Mains

    SciTech Connect (OSTI)

    Susan Burkett; Hagen Schempf

    2006-01-31

    Carnegie Mellon University (CMU) under contract from Department of Energy/National Energy Technology Laboratory (DoE/NETL) and co-funding from the Northeast Gas Association (NGA), has completed the overall system design of the next-generation Explorer-II (X-II) live gas main NDE and visual inspection robot platform. The design is based on the Explorer-I prototype which was built and field-tested under a prior (also DoE- and NGA co-funded) program, and served as the validation that self-powered robots under wireless control could access and navigate live natural gas distribution mains. The X-II system design ({approx}8 ft. and 66 lbs.) was heavily based on the X-I design, yet was substantially expanded to allow the addition of NDE sensor systems (while retaining its visual inspection capability), making it a modular system, and expanding its ability to operate at pressures up to 750 psig (high-pressure and unpiggable steel-pipe distribution mains). A new electronics architecture and on-board software kernel were added to again improve system performance. A locating sonde system was integrated to allow for absolute position-referencing during inspection (coupled with external differential GPS) and emergency-locating. The power system was upgraded to utilize lithium-based battery-cells for an increase in mission-time. The system architecture now relies on a dual set of end camera-modules to house the 32-bit processors (Single-Board Computer or SBC) as well as the imaging and wireless (off-board) and CAN-based (on-board) communication hardware and software systems (as well as the sonde-coil and -electronics). The drive-module (2 ea.) are still responsible for bracing (and centering) to drive in push/pull fashion the robot train into and through the pipes and obstacles. The steering modules and their arrangement, still allow the robot to configure itself to perform any-angle (up to 90 deg) turns in any orientation (incl. vertical), and enable the live launching and recovery of the system using custom fittings and a (to be developed) launch-chamber/-tube. The battery modules are used to power the system, by providing power to the robot's bus. The support modules perform the functions of centration for the rest of the train as well as odometry pickups using incremental encoding schemes. The electronics architecture is based on a distributed (8-bit) microprocessor architecture (at least 1 in ea. module) communicating to a (one of two) 32-bit SBC, which manages all video-processing, posture and motion control as well as CAN and wireless communications. The operator controls the entire system from an off-board (laptop) controller, which is in constant wireless communication with the robot train in the pipe. The sensor modules collect data and forward it to the robot operator computer (via the CAN-wireless communications chain), who then transfers it to a dedicated NDE data-storage and post-processing computer for further (real-time or off-line) analysis. CMU has fully designed every module in terms of the mechanical, electrical and software elements (architecture only). Substantial effort has gone into pre-prototyping to uncover mechanical, electrical and software issues for critical elements of the design. Design requirements for sensor-providers were also detailed and finalized and provided to them for inclusion in their designs. CMU is expecting to start 2006 with a detailed design effort for both mechanical and electrical components, followed by procurement and fabrication efforts in late winter/spring 2006. The assembly and integration efforts will occupy all of the spring and summer of 2006. Software development will also be a major effort in 2006, and will result in porting and debugging of code on the module- and train-levels in late summer and Fall of 2006. Final pipe mock-up testing is expected in late fall and early winter 2006 with an acceptance demonstration of the robot train (with a sensor-module mock-up) planned to DoE/NGA towards the end of 2006.

  15. Magnetic resonance visualization of conductive structures by sequence-triggered direct currents and spin-echo phase imaging

    SciTech Connect (OSTI)

    Eibofner, Frank; Wojtczyk, Hanne; Graf, Hansjrg E-mail: drGraf@t-online.de; Clasen, Stephan

    2014-06-15

    Purpose: Instrument visualization in interventional magnetic resonance imaging (MRI) is commonly performed via susceptibility artifacts. Unfortunately, this approach suffers from limited conspicuity in inhomogeneous tissue and disturbed spatial encoding. Also, susceptibility artifacts are controllable only by sequence parameters. This work presents the basics of a new visualization method overcoming such problems by applying sequence-triggered direct current (DC) pulses in spin-echo (SE) imaging. SE phase images allow for background free current path localization. Methods: Application of a sequence-triggered DC pulse in SE imaging, e.g., during a time period between radiofrequency excitation and refocusing, results in transient field inhomogeneities. Dependent on the additional z-magnetic field from the DC, a phase offset results despite the refocusing pulse. False spatial encoding is avoided by DC application during periods when read-out or slice-encoding gradients are inactive. A water phantom containing a brass conductor (water equivalent susceptibility) and a titanium needle (serving as susceptibility source) was used to demonstrate the feasibility. Artifact dependence on current strength and orientation was examined. Results: Without DC, the brass conductor was only visible due to its water displacement. The titanium needle showed typical susceptibility artifacts. Applying triggered DC pulses, the phase offset of spins near the conductor appeared. Because SE phase images are homogenous also in regions of persistent field inhomogeneities, the position of the conductor could be determined with high reliability. Artifact characteristic could be easily controlled by amperage leaving sequence parameters unchanged. For an angle of 30 between current and static field visualization was still possible. Conclusions: SE phase images display the position of a conductor carrying pulsed DC free from artifacts caused by persistent field inhomogeneities. Magnitude and phase images are acquired simultaneously under the same conditions without the use of extra measurement time. The presented technique offers many advantages for precise instrument localization in interventional MRI.

  16. VISUAL STEP-BY-STEP INSTRUCTIONS ON HOW TO APPLY FOR A JOB ON THE USAJOBS WEBSITE

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    VISUAL STEP-BY-STEP INSTRUCTIONS ON HOW TO APPLY FOR A JOB ON THE USAJOBS WEBSITE (These instructions also explain the differences between DEU and MP.) STEP 1: Locate the USAJOBS website at http://usajobs.gov STEP 2: Select the blue "Search Jobs" button. STEP 3: If you are a Federal (Status and MP) employee it is VERY IMPORTANT that you answer "YES" in this box as shown below. This will search for vacancies open to Federal (Status and MP) employees. Note: the arrow below now

  17. Visualization of Fuel Cell Water Transport and Performance Characterization under Freezing Conditions

    SciTech Connect (OSTI)

    Kandlikar, S.G.; Lu, Z.; Rao, N.; Sergi, J.; Rath, C.; Dade, C.; Trabold, T.; Owejan, J.; Gagliardo, J.; Allen, J.; Yassar, R.S.; Medici, E.; Herescu, A.

    2010-05-30

    In this program, Rochester Institute of Technology (RIT), General Motors (GM) and Michigan Technological University (MTU) have focused on fundamental studies that address water transport, accumulation and mitigation processes in the gas diffusion layer and flow field channels of the bipolar plate. These studies have been conducted with a particular emphasis on understanding the key transport phenomena which control fuel cell operation under freezing conditions. Technical accomplishments are listed below: Demonstrated that shutdown air purge is controlled predominantly by the water carrying capacity of the purge stream and the most practical means of reducing the purge time and energy is to reduce the volume of liquid water present in the fuel cell at shutdown. The GDL thermal conductivity has been identified as an important parameter to dictate water accumulation within a GDL. Found that under the normal shutdown conditions most of the GDL-level water accumulation occurs on the anode side and that the mass transport resistance of the membrane electrode assembly (MEA) thus plays a critically important role in understanding and optimizing purge. Identified two-phase flow patterns (slug, film and mist flow) in flow field channel, established the features of each pattern, and created a flow pattern map to characterize the two-phase flow in GDL/channel combination. Implemented changes to the baseline channel surface energy and GDL materials and evaluated their performance with the ex situ multi-channel experiments. It was found that the hydrophilic channel (contact angle ? ? 10?) facilitates the removal of liquid water by capillary effects and by reducing water accumulation at the channel exit. It was also found that GDL without MPL promotes film flow and shifts the slug-to-film flow transition to lower air flow rates, compared with the case of GDL with MPL. Identified a new mechanism of water transport through GDLs based on Haines jump mechanism. The breakdown and redevelopment of the water paths in GDLs lead to an intermittent water drainage behavior, which is characterized by dynamic capillary pressure and changing of breakthrough location. MPL was found to not only limit the number of water entry locations into the GDL (thus drastically reducing water saturation), but also stabilizes the water paths (or morphology). Simultaneously visualized the water transport on cathode and anode channels of an operating fuel cell. It was found that under relatively dry hydrogen/air conditions at lower temperatures, the cathode channels display a similar flow pattern map to the ex-situ experiments under similar conditions. Liquid water on the anode side is more likely formed via condensation of water vapor which is transported through the anode GDL. Investigated the water percolation through the GDL with pseudo-Hele-Shaw experiments and simulated the capillary-driven two-phase flow inside gas diffusion media, with the pore size distributions being modeled by using Weibull distribution functions. The effect of the inclusion of the microporous layer in the fuel cell assembly was explored numerically. Developed and validated a simple, reliable computational tool for predicting liquid water transport in GDLs. Developed a new method of determining the pore size distribution in GDL using scanning electron microscope (SEM) image processing, which allows for separate characterization of GDL wetting properties and pore size distribution. Determined the effect of surface wettability and channel cross section and bend dihedral on liquid holdup in fuel cell flow channels. A major thrust of this research program has been the development of an optimal combination of materials, design features and cell operating conditions that achieve a water management strategy which facilitates fuel cell operation under freezing conditions. Based on our various findings, we have made the final recommendation relative to GDL materials, bipolar design and surface properties, and the combination of materials, design featur

  18. Measurements of ion cyclotron range of frequencies mode converted wave intensity with phase contrast imaging in Alcator C-Mod and comparison with full-wave simulations

    SciTech Connect (OSTI)

    Tsujii, N.; Porkolab, M.; Bonoli, P. T.; Lin, Y.; Wright, J. C.; Wukitch, S. J.; Jaeger, E. F.; Green, D. L.; Harvey, R. W.

    2012-08-15

    Radio frequency waves in the ion cyclotron range of frequencies (ICRF) are widely used to heat tokamak plasmas. In ICRF heating schemes involving multiple ion species, the launched fast waves convert to ion cyclotron waves or ion Bernstein waves at the two-ion hybrid resonances. Mode converted waves are of interest as actuators to optimise plasma performance through current drive and flow drive. In order to describe these processes accurately in a realistic tokamak geometry, numerical simulations are essential, and it is important that these codes be validated against experiment. In this study, the mode converted waves were measured using a phase contrast imaging technique in D-H and D-{sup 3}He plasmas. The measured mode converted wave intensity in the D-{sup 3}He mode conversion regime was found to be a factor of {approx}50 weaker than the full-wave predictions. The discrepancy was reduced in the hydrogen minority heating regime, where mode conversion is weaker.

  19. VisIO: enabling interactive visualization of ultra-scale, time-series data via high-bandwidth distributed I/O systems

    SciTech Connect (OSTI)

    Mitchell, Christopher J; Ahrens, James P; Wang, Jun

    2010-10-15

    Petascale simulations compute at resolutions ranging into billions of cells and write terabytes of data for visualization and analysis. Interactive visuaUzation of this time series is a desired step before starting a new run. The I/O subsystem and associated network often are a significant impediment to interactive visualization of time-varying data; as they are not configured or provisioned to provide necessary I/O read rates. In this paper, we propose a new I/O library for visualization applications: VisIO. Visualization applications commonly use N-to-N reads within their parallel enabled readers which provides an incentive for a shared-nothing approach to I/O, similar to other data-intensive approaches such as Hadoop. However, unlike other data-intensive applications, visualization requires: (1) interactive performance for large data volumes, (2) compatibility with MPI and POSIX file system semantics for compatibility with existing infrastructure, and (3) use of existing file formats and their stipulated data partitioning rules. VisIO, provides a mechanism for using a non-POSIX distributed file system to provide linear scaling of 110 bandwidth. In addition, we introduce a novel scheduling algorithm that helps to co-locate visualization processes on nodes with the requested data. Testing using VisIO integrated into Para View was conducted using the Hadoop Distributed File System (HDFS) on TACC's Longhorn cluster. A representative dataset, VPIC, across 128 nodes showed a 64.4% read performance improvement compared to the provided Lustre installation. Also tested, was a dataset representing a global ocean salinity simulation that showed a 51.4% improvement in read performance over Lustre when using our VisIO system. VisIO, provides powerful high-performance I/O services to visualization applications, allowing for interactive performance with ultra-scale, time-series data.

  20. Reconstruction and Visualization of Fiber and Laminar Structure inthe Normal Human Heart from Ex Vivo DTMRI Data

    SciTech Connect (OSTI)

    Rohmer, Damien; Sitek, Arkadiusz; Gullberg, Grant T.

    2006-12-18

    Background - The human heart is composed of a helicalnetwork of muscle fibers. These fibers are organized to form sheets thatare separated by cleavage surfaces. This complex structure of fibers andsheets is responsible for the orthotropic mechanical properties ofcardiac muscle. The understanding of the configuration of the 3D fiberand sheet structure is important for modeling the mechanical andelectrical properties of the heart and changes in this configuration maybe of significant importance to understand the remodeling aftermyocardial infarction.Methods - Anisotropic least square filteringfollowed by fiber and sheet tracking techniques were applied to DiffusionTensor Magnetic Resonance Imaging (DTMRI) data of the excised humanheart. The fiber configuration was visualized by using thin tubes toincrease 3-dimensional visual perception of the complex structure. Thesheet structures were reconstructed from the DTMRI data, obtainingsurfaces that span the wall from the endo- to the epicardium. Allvisualizations were performed using the high-quality ray-tracing softwarePOV-Ray. Results - The fibers are shown to lie in sheets that haveconcave or convex transmural structure which correspond to histologicalstudies published in the literature. The fiber angles varied depending onthe position between the epi- and endocardium. The sheets had a complexstructure that depended on the location within the myocardium. In theapex region the sheets had more curvature. Conclusions - A high-qualityvisualization algorithm applied to demonstrated high quality DTMRI datais able to elicit the comprehension of the complex 3 dimensionalstructure of the fibers and sheets in the heart.

  1. Distributed computing strategies for processing of FT-ICR MS imaging datasets for continuous mode data visualization

    SciTech Connect (OSTI)

    Smith, Donald F.; Schulz, Carl; Konijnenburg, Marco; Kilic, Mehmet; Heeren, Ronald M.

    2015-03-01

    High-resolution Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry imaging enables the spatial mapping and identification of biomolecules from complex surfaces. The need for long time-domain transients, and thus large raw file sizes, results in a large amount of raw data (“big data”) that must be processed efficiently and rapidly. This can be compounded by largearea imaging and/or high spatial resolution imaging. For FT-ICR, data processing and data reduction must not compromise the high mass resolution afforded by the mass spectrometer. The continuous mode “Mosaic Datacube” approach allows high mass resolution visualization (0.001 Da) of mass spectrometry imaging data, but requires additional processing as compared to featurebased processing. We describe the use of distributed computing for processing of FT-ICR MS imaging datasets with generation of continuous mode Mosaic Datacubes for high mass resolution visualization. An eight-fold improvement in processing time is demonstrated using a Dutch nationally available cloud service.

  2. Noninvasive Monitoring of Microvascular Changes With Partial Irradiation Using Dynamic Contrast-Enhanced and Blood Oxygen Level-Dependent Magnetic Resonance Imaging

    SciTech Connect (OSTI)

    Lin, Yu-Chun; Department of Electrical Engineering, Chang Gung University, Linkou, Taiwan; Department of Medical Imaging and Radiological Sciences, Chang Gung University, Linkou, Taiwan ; Wang, Jiun-Jie; Department of Medical Imaging and Radiological Sciences, Chang Gung University, Linkou, Taiwan ; Hong, Ji-Hong; Department of Radiation Oncology, Chang Gung Memorial Hospital, Linkou, Taiwan ; Lin, Yi-Ping; Lee, Chung-Chi; Department of Radiation Oncology, Chang Gung Memorial Hospital, Linkou, Taiwan ; Wai, Yau-Yau; Ng, Shu-Hang; Wu, Yi-Ming; Department of Medical Imaging and Radiological Sciences, Chang Gung University, Linkou, Taiwan ; Wang, Chun-Chieh; Department of Radiation Oncology, Chang Gung Memorial Hospital, Linkou, Taiwan

    2013-04-01

    Purpose: The microvasculature of a tumor plays an important role in its response to radiation therapy. Dynamic contrast-enhanced magnetic resonance imaging (DCE MRI) and blood oxygen level-dependent (BOLD) MRI are both sensitive to vascular characteristics. The present study proposed a partial irradiation approach to a xenograft tumor to investigate the intratumoral response to radiation therapy using DCE and BOLD MRI. Methods and Materials: TRAMP-C1 tumors were grown in C57BL/6J mice. Partial irradiation was performed on the distal half of the tumor with a single dose of 15 Gy. DCE MRI was performed to derive the endothelium transfer constant, K{sup trans}, using pharmacokinetic analysis. BOLD MRI was performed using quantitative R2* measurements with carbogen breathing. The histology of the tumor was analyzed using hematoxylin and eosin staining and CD31 staining to detect endothelial cells. The differences between the irradiated and nonirradiated regions of the tumor were assessed using K{sup trans} values, ?R2* values in response to carbogen and microvascular density (MVD) measurements. Results: A significantly increased K{sup trans} and reduced BOLD response to carbogen were found in the irradiated region of the tumor compared with the nonirradiated region (P<.05). Histologic analysis showed a significant aggregation of giant cells and a reduced MVD in the irradiated region of the tumor. The radiation-induced difference in the BOLD response was associated with differences in MVD and K{sup trans}. Conclusions: We demonstrated that DCE MRI and carbogen-challenge BOLD MRI can detect differential responses within a tumor that may potentially serve as noninvasive imaging biomarkers to detect microvascular changes in response to radiation therapy.

  3. MID-INFRARED HIGH-CONTRAST IMAGING OF HD 114174 B: AN APPARENT AGE DISCREPANCY IN A ''SIRIUS-LIKE'' BINARY SYSTEM

    SciTech Connect (OSTI)

    Matthews, Christopher T.; Crepp, Justin R.; Skemer, Andrew; Hinz, Philip M.; Bailey, Vanessa P.; Defrere, Denis; Leisenring, Jarron; Gianninas, Alexandros; Kilic, Mukremin; Skrutskie, Michael; Esposito, Simone; Puglisi, Alfio

    2014-03-10

    We present new observations of the faint ''Sirius-like'' companion discovered to orbit HD 114174. Previous attempts to image HD 114174 B at mid-infrared wavelengths using NIRC2 at Keck have resulted in a non-detection. Our new L'-band observations taken with the Large Binocular Telescope and L/M-band InfraRed Camera recover the companion (?L = 10.15 0.15mag, ? = 0.''675 0.''016) with a high signal-to-noise ratio (10?). This measurement represents the deepest L' high-contrast imaging detection at subarcsecond separations to date, including extrasolar planets. We confirm that HD 114174 B has near-infrared colors consistent with the interpretation of a cool white dwarf (WD; J L' = 0.76 0.19mag, K L' = 0.64 0.20). New model fits to the object's spectral energy distribution indicate a temperature T {sub eff} = 4260 360K, surface gravity log g = 7.94 0.03, a cooling age t{sub c} ? 7.8Gyr, and mass M = 0.54 0.01 M {sub ?}. We find that the cooling ages given by theoretical atmospheric models do not agree with the age of HD 114174 A derived from both isochronological and gyrochronological analyses. We speculate on possible scenarios to explain the apparent age discrepancy between the primary and secondary. HD114174B is a nearby benchmark WD that will ultimately enable a dynamical mass estimate through continued Doppler and astrometric monitoring. Efforts to characterize its physical properties in detail will test theoretical atmospheric models and improve our understanding of WD evolution, cooling, and progenitor masses.

  4. Automated Voxel-Based Analysis of Volumetric Dynamic Contrast-Enhanced CT Data Improves Measurement of Serial Changes in Tumor Vascular Biomarkers

    SciTech Connect (OSTI)

    Coolens, Catherine; Driscoll, Brandon; Chung, Caroline; Shek, Tina; Gorjizadeh, Alborz; Ménard, Cynthia; Jaffray, David

    2015-01-01

    Objectives: Development of perfusion imaging as a biomarker requires more robust methodologies for quantification of tumor physiology that allow assessment of volumetric tumor heterogeneity over time. This study proposes a parametric method for automatically analyzing perfused tissue from volumetric dynamic contrast-enhanced (DCE) computed tomography (CT) scans and assesses whether this 4-dimensional (4D) DCE approach is more robust and accurate than conventional, region-of-interest (ROI)-based CT methods in quantifying tumor perfusion with preliminary evaluation in metastatic brain cancer. Methods and Materials: Functional parameter reproducibility and analysis of sensitivity to imaging resolution and arterial input function were evaluated in image sets acquired from a 320-slice CT with a controlled flow phantom and patients with brain metastases, whose treatments were planned for stereotactic radiation surgery and who consented to a research ethics board-approved prospective imaging biomarker study. A voxel-based temporal dynamic analysis (TDA) methodology was used at baseline, at day 7, and at day 20 after treatment. The ability to detect changes in kinetic parameter maps in clinical data sets was investigated for both 4D TDA and conventional 2D ROI-based analysis methods. Results: A total of 7 brain metastases in 3 patients were evaluated over the 3 time points. The 4D TDA method showed improved spatial efficacy and accuracy of perfusion parameters compared to ROI-based DCE analysis (P<.005), with a reproducibility error of less than 2% when tested with DCE phantom data. Clinically, changes in transfer constant from the blood plasma into the extracellular extravascular space (K{sub trans}) were seen when using TDA, with substantially smaller errors than the 2D method on both day 7 post radiation surgery (±13%; P<.05) and by day 20 (±12%; P<.04). Standard methods showed a decrease in K{sub trans} but with large uncertainty (111.6 ± 150.5) %. Conclusions: Parametric voxel-based analysis of 4D DCE CT data resulted in greater accuracy and reliability in measuring changes in perfusion CT-based kinetic metrics, which have the potential to be used as biomarkers in patients with metastatic brain cancer.

  5. Final Technical Report for "Feature Extraction, Characterization, and Visualization for Protein Interaction via Geometric and Topological Methods"

    SciTech Connect (OSTI)

    Wang, Yusu

    2013-03-25

    Shape analysis plays an important role in many applications. In particular, in molecular biology, analyzing molecular shapes is essential to the fundamental problem of understanding how molecules interact. This project aims at developing efficient and effective algorithms to characterize and analyze molecular structures using geometric and topological methods. Two main components of this project are (1) developing novel molecular shape descriptors; and (2) identifying and representing meaningful features based on those descriptors. The project also produces accompanying (visualization) software. Results from this project (09/2006??10/2009) include the following publications. We have also set up web-servers for the software developed in this period, so that our new methods are accessible to a broader scientific community. The web sites are given below as well. In this final technical report, we first list publications and software resulted from this project. We then briefly explain the research conducted and main accomplishments during the period of this project.

  6. XVis: Visualization for the Extreme-Scale Scientific-Computation Ecosystem: Year-end report FY15 Q4.

    SciTech Connect (OSTI)

    Moreland, Kenneth D.; Sewell, Christopher; Childs, Hank; Ma, Kwan-Liu; Geveci, Berk; Meredith, Jeremy

    2015-12-01

    The XVis project brings together the key elements of research to enable scientific discovery at extreme scale. Scientific computing will no longer be purely about how fast computations can be performed. Energy constraints, processor changes, and I/O limitations necessitate significant changes in both the software applications used in scientific computation and the ways in which scientists use them. Components for modeling, simulation, analysis, and visualization must work together in a computational ecosystem, rather than working independently as they have in the past. This project provides the necessary research and infrastructure for scientific discovery in this new computational ecosystem by addressing four interlocking challenges: emerging processor technology, in situ integration, usability, and proxy analysis.

  7. Identifying, Visualizing, and Fusing Social Media Data to Support Nonproliferation and Arms Control Treaty Verification: Preliminary Results

    SciTech Connect (OSTI)

    Gastelum, Zoe N.; Cramer, Nicholas O.; Benz, Jacob M.; Kreyling, Sean J.; Henry, Michael J.; Corley, Courtney D.; Whattam, Kevin M.

    2013-07-11

    While international nonproliferation and arms control verification capabilities have their foundations in physical and chemical sensors, state declarations, and on-site inspections, verification experts are beginning to consider the importance of open source data to complement and support traditional means of verification. One of those new, and increasingly expanding, sources of open source information is social media, which can be ingested and understood through social media analytics (SMA). Pacific Northwest National Laboratory (PNNL) is conducting research to further our ability to identify, visualize, and fuse social media data to support nonproliferation and arms control treaty verification efforts. This paper will describe our preliminary research to examine social media signatures of nonproliferation or arms control proxy events. We will describe the development of our preliminary nonproliferation and arms control proxy events, outline our initial findings, and propose ideas for future work.

  8. Matrix assisted laser desorption/ionization-mass spectrometry imaging (MALDI-MSI) for direct visualization of plant metabolites in situ

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Sturtevant, Drew; Lee, Young -Jin; Chapman, Kent D.

    2015-11-22

    Direct visualization of plant tissues by matrix assisted laser desorption ionization-mass spectrometry imaging (MALDI-MSI) has revealed key insights into the localization of metabolites in situ. Recent efforts have determined the spatial distribution of primary and secondary metabolites in plant tissues and cells. Strategies have been applied in many areas of metabolism including isotope flux analyses, plant interactions, and transcriptional regulation of metabolite accumulation. Technological advances have pushed achievable spatial resolution to subcellular levels and increased instrument sensitivity by several orders of magnitude. Furthermore, it is anticipated that MALDI-MSI and other MSI approaches will bring a new level of understanding tomore » metabolomics as scientists will be encouraged to consider spatial heterogeneity of metabolites in descriptions of metabolic pathway regulation.« less

  9. Direct Visualization of Solid Electrolyte Interphase Formation in Lithium-Ion Batteries with In Situ Electrochemical Transmission Electron Microscopy

    SciTech Connect (OSTI)

    Unocic, Raymond R; Sun, Xiao-Guang; Sacci, Robert L; Adamczyk, Leslie A; Alsem, Daan Hein; Dai, Sheng; Dudney, Nancy J; More, Karren Leslie

    2014-01-01

    Complex, electrochemically driven transport processes form the basis of electrochemical energy storage devices. The direct imaging of electrochemical processes at high spatial resolution and within their native liquid electrolyte would significantly enhance our understanding of device functionality, but has remained elusive. In this work we use a recently developed liquid cell for in situ electrochemical transmission electron microscopy to obtain insight into the electrolyte decomposition mechanisms and kinetics in lithium-ion (Li-ion) batteries by characterizing the dynamics of solid electrolyte interphase (SEI) formation and evolution. Here we are able to visualize the detailed structure of the SEI that forms locally at the electrode/electrolyte interface during lithium intercalation into natural graphite from an organic Li-ion battery electrolyte. We quantify the SEI growth kinetics and observe the dynamic self-healing nature of the SEI with changes in cell potential.

  10. High-frequency combination coding-based steady-state visual evoked potential for brain computer interface

    SciTech Connect (OSTI)

    Zhang, Feng; Zhang, Xin; Xie, Jun; Li, Yeping; Han, Chengcheng; Lili, Li; Wang, Jing; Xu, Guang-Hua

    2015-03-10

    This study presents a new steady-state visual evoked potential (SSVEP) paradigm for brain computer interface (BCI) systems. The goal of this study is to increase the number of targets using fewer stimulation high frequencies, with diminishing subject’s fatigue and reducing the risk of photosensitive epileptic seizures. The new paradigm is High-Frequency Combination Coding-Based High-Frequency Steady-State Visual Evoked Potential (HFCC-SSVEP).Firstly, we studied SSVEP high frequency(beyond 25 Hz)response of SSVEP, whose paradigm is presented on the LED. The SNR (Signal to Noise Ratio) of high frequency(beyond 40 Hz) response is very low, which is been unable to be distinguished through the traditional analysis method; Secondly we investigated the HFCC-SSVEP response (beyond 25 Hz) for 3 frequencies (25Hz, 33.33Hz, and 40Hz), HFCC-SSVEP produces n{sup n} with n high stimulation frequencies through Frequence Combination Code. Further, Animproved Hilbert-huang transform (IHHT)-based variable frequency EEG feature extraction method and a local spectrum extreme target identification algorithmare adopted to extract time-frequency feature of the proposed HFCC-SSVEP response.Linear predictions and fixed sifting (iterating) 10 time is used to overcome the shortage of end effect and stopping criterion,generalized zero-crossing (GZC) is used to compute the instantaneous frequency of the proposed SSVEP respondent signals, the improved HHT-based feature extraction method for the proposed SSVEP paradigm in this study increases recognition efficiency, so as to improve ITR and to increase the stability of the BCI system. what is more, SSVEPs evoked by high-frequency stimuli (beyond 25Hz) minimally diminish subject’s fatigue and prevent safety hazards linked to photo-induced epileptic seizures, So as to ensure the system efficiency and undamaging.This study tests three subjects in order to verify the feasibility of the proposed method.

  11. Simple visualization techniques for die casting part and die design. Final report, July 1, 1995--September 30, 1997

    SciTech Connect (OSTI)

    Miller, R.A.; Lu, S.C.; Rebello, A.B.

    1998-05-01

    The objective of this work was to develop and test die casting design evaluation techniques based on the visualization of geometric data that is related to potential defects of problems. Specifically, thickness information is used to provide insight into potential thermal problems in the part and die. Distance from the gate and a special type of animation of the fill pattern is used to provide an assessment of gate, vent and overflow locations. Techniques have been developed to convert part design information in the form of STL files to a volume-based representation called a voxel model. The use of STL files makes the process CAD system independent. Once in voxel form, methods that were developed in this work are used to identify thick regions in the part, thin regions in the part and/or die, distance from user specified entry locations (gates), and the qualitative depiction of the fill pattern. The methods were tested with a prototype implementation on the UNIX platform. The results of comparisons with numerical simulation and field reported defects were surprisingly good. The fill-related methods were also compared against short-shots and a water analog study using high speed video. The report contains the results of the testing plus detailed background material on the construction of voxel models, the methods used for displaying results, and the computational geometric reasoning methods used to create die casting-related information form the voxel model for display to the user.

  12. Simple visualization techniques for die casting part and die design. Final report, July 1, 1995--September 30, 1997

    SciTech Connect (OSTI)

    Miller, R.A.; Lu, S.C.; Rebello, A.B.

    1998-05-01

    The objective of this work was to develop and test die casting design evaluation techniques based on the visualization of geometric data that is related to potential defects of problems. Specifically, thickness information is used to provide insight into potential thermal problems in the part and die. Distance from the gate and a special type of animation of the fill pattern is used to provide an assessment of gate, vent and overflow locations. Techniques have been developed to convert part design information in the form of STL files to a volume-based representation called a voxel model. The use of STL files makes the process CAD system independent. Once in voxel form, methods that were developed in this work are used to identify thick regions in the part, thin regions in the part and/or die, distance from user specified entry locations (gates), and the qualitative depiction of the fill pattern. The methods were tested with a prototype implementation on the UNIX platform. The results of comparisons with numerical simulation and field reported defects were surprisingly good. The fill-related methods were also compared against short-shots and a water analog study using high speed video. The report contains the results of the testing plus detailed background material on the construction of voxel models, the methods used for displaying results, and the computational geometric reasoning methods used to create die casting-related information from the voxel model for display to the user.

  13. Visualizing the non-equilibrium dynamics of photoinduced intramolecular electron transfer with femtosecond X-ray pulses

    SciTech Connect (OSTI)

    Canton, Sophie E.; Kjr, Kasper S.; Vank, Gyrgy; van Driel, Tim B.; Adachi, Shin -ichi; Bordage, Amlie; Bressler, Christian; Chabera, Pavel; Christensen, Morten; Dohn, Asmus O.; Galler, Andreas; Gawelda, Wojciech; Gosztola, David; Haldrup, Kristoffer; Harlang, Tobias; Liu, Yizhu; Mller, Klaus B.; Nmeth, Zoltn; Nozawa, Shunsuke; Ppai, Mtys; Sato, Tokushi; Sato, Takahiro; Suarez-Alcantara, Karina; Togashi, Tadashi; Tono, Kensuke; Uhlig, Jens; Vithanage, Dimali A.; Wrnmark, Kenneth; Yabashi, Makina; Zhang, Jianxin; Sundstrm, Villy; Nielsen, Martin M.

    2015-03-02

    Ultrafast photoinduced electron transfer preceding energy equilibration still poses many experimental and conceptual challenges to the optimization of photoconversion since an atomic-scale description has so far been beyond reach. Here we combine femtosecond transient optical absorption spectroscopy with ultrafast X-ray emission spectroscopy and diffuse X-ray scattering at the SACLA facility to track the non-equilibrated electronic and structural dynamics within a bimetallic donoracceptor complex that contains an optically dark centre. Exploiting the 100-fold increase in temporal resolution as compared with storage ring facilities, these measurements constitute the first X-ray-based visualization of a non-equilibrated intramolecular electron transfer process over large interatomic distances. Thus experimental and theoretical results establish that mediation through electronically excited molecular states is a key mechanistic feature. The present study demonstrates the extensive potential of femtosecond X-ray techniques as diagnostics of non-adiabatic electron transfer processes in synthetic and biological systems, and some directions for future studies, are outlined.

  14. Visual Sample Plan (VSP) Statistical Software as Related to the CTBTOs On-Site Inspection Procedure

    SciTech Connect (OSTI)

    Pulsipher, Trenton C.; Walsh, Stephen J.; Pulsipher, Brent A.; Milbrath, Brian D.

    2010-09-01

    In the event of a potential nuclear weapons test the Comprehensive Nuclear-Test-Ban Treaty Organization (CTBTO) is commissioned to conduct an on-site investigation (OSI) of the suspected test site in an effort to find confirmatory evidence of the nuclear test. The OSI activities include collecting air, surface soil, and underground samples to search for indications of a nuclear weapons test - these indicators include radionuclides and radioactive isotopes Ar and Xe. This report investigates the capability of the Visual Sample Plan (VSP) software to contribute to the sampling activities of the CTBTO during an OSI. VSP is a statistical sampling design software, constructed under data quality objectives, which has been adapted for environmental remediation and contamination detection problems for the EPA, US Army, DoD and DHS among others. This report provides discussion of a number of VSP sample designs, which may be pertinent to the work undertaken during an OSI. Examples and descriptions of such designs include hot spot sampling, combined random and judgment sampling, multiple increment sampling, radiological transect surveying, and a brief description of other potentially applicable sampling methods. Further, this work highlights a potential need for the use of statistically based sample designs in OSI activities. The use of such designs may enable canvassing a sample area without full sampling, provide a measure of confidence that radionuclides are not present, and allow investigators to refocus resources in other areas of concern.

  15. Direct visualization of the hydration layer on alumina nanoparticles with the fluid cell STEM in situ

    SciTech Connect (OSTI)

    Firlar, Emre; ?nar, Simge; Kashyap, Sanjay; Akinc, Mufit; Prozorov, Tanya

    2015-05-21

    Rheological behavior of aqueous suspensions containing nanometer-sized powders is of relevance to many branches of industry. Unusually high viscosities observed for suspensions of nanoparticles compared to those of micron size powders cannot be explained by current viscosity models. Formation of so-called hydration layer on alumina nanoparticles in water was hypothesized, but never observed experimentally. We report here on the direct visualization of aqueous suspensions of alumina with the fluid cell in situ. We observe the hydration layer formed over the particle aggregates and show that such hydrated aggregates constitute new particle assemblies and affect the flow behavior of the suspensions. We discuss how these hydrated nanoclusters alter the effective solid content and the viscosity of nanostructured suspensions. As a result, our findings elucidate the source of high viscosity observed for nanoparticle suspensions and are of direct relevance to many industrial sectors including materials, food, cosmetics, pharmaceutical among others employing colloidal slurries with nanometer-scale particles.

  16. Visualizing the non-equilibrium dynamics of photoinduced intramolecular electron transfer with femtosecond X-ray pulses

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Canton, Sophie E.; Kjær, Kasper S.; Vankó, György; van Driel, Tim B.; Adachi, Shin -ichi; Bordage, Amélie; Bressler, Christian; Chabera, Pavel; Christensen, Morten; Dohn, Asmus O.; et al

    2015-03-02

    Ultrafast photoinduced electron transfer preceding energy equilibration still poses many experimental and conceptual challenges to the optimization of photoconversion since an atomic-scale description has so far been beyond reach. Here we combine femtosecond transient optical absorption spectroscopy with ultrafast X-ray emission spectroscopy and diffuse X-ray scattering at the SACLA facility to track the non-equilibrated electronic and structural dynamics within a bimetallic donor–acceptor complex that contains an optically dark centre. Exploiting the 100-fold increase in temporal resolution as compared with storage ring facilities, these measurements constitute the first X-ray-based visualization of a non-equilibrated intramolecular electron transfer process over large interatomic distances.more » Thus experimental and theoretical results establish that mediation through electronically excited molecular states is a key mechanistic feature. The present study demonstrates the extensive potential of femtosecond X-ray techniques as diagnostics of non-adiabatic electron transfer processes in synthetic and biological systems, and some directions for future studies, are outlined.« less

  17. Visualizing the Structural Evolution of LSM/xYSZ Composite Cathodes for SOFC by in-situ Neutron Diffraction

    SciTech Connect (OSTI)

    Chen, Yan; Yang, Ling; Ren, Fei; An, Ke

    2014-01-01

    Composite cathodes for solid oxide fuel cells, the mixtures of (La0.8Sr0.2)0.95MnO3- (LSM) and (Y2O3)x(ZrO2)1-x (xYSZ, x = 3, 6, 8 and 10), have the thermal stability unraveled at elevated temperatures by using in-situ neutron diffraction. The Rietveld refinement analysis of neutron diffraction visualizes the phase evolutions and the ion activities in the material systems. The phase transition of tetragonal YSZ at T > 900 C leads to a heterogeneous redistribution of Mn ions. The reaction of LSM and YSZ occurring at T > 1100 C was revealed as a three-stage process, yielding La2Zr2O7, SrZrO3 and MnO. The activities of Y, Mn and La ions at elevated temperatures are derived by the structural analysis, and the three-stage reaction of YSZ and LSM was found strongly correlated to ions behaviors.

  18. Ocean Thermal Extractable Energy Visualization- Final Technical Report on Award DE-EE0002664. October 28, 2012

    SciTech Connect (OSTI)

    Ascari, Matthew B.; Hanson, Howard P.; Rauchenstein, Lynn; Van Zwieten, James; Bharathan, Desikan; Heimiller, Donna; Langle, Nicholas; Scott, George N.; Potemra, James; Nagurny, N. John; Jansen, Eugene

    2012-10-28

    The Ocean Thermal Extractable Energy Visualization (OTEEV) project focuses on assessing the Maximum Practicably Extractable Energy (MPEE) from the world's ocean thermal resources. MPEE is defined as being sustainable and technically feasible, given today's state-of-the-art ocean energy technology. Under this project the OTEEV team developed a comprehensive Geospatial Information System (GIS) dataset and software tool, and used the tool to provide a meaningful assessment of MPEE from the global and domestic U.S. ocean thermal resources. The OTEEV project leverages existing NREL renewable energy GIS technologies and integrates extractable energy estimated from quality-controlled data and projected optimal achievable energy conversion rates. Input data are synthesized from a broad range of existing in-situ measurements and ground-truthed numerical models with temporal and spatial resolutions sufficient to reflect the local resource. Energy production rates are calculated for regions based on conversion rates estimated for current technology, local energy density of the resource, and sustainable resource extraction. Plant spacing and maximum production rates are then estimated based on a default plant size and transmission mechanisms. The resulting data are organized, displayed, and accessed using a multi-layered GIS mapping tool, http://maps.nrel.gov/mhk_atlas with a user-friendly graphical user interface.

  19. Charge transfer of single laser crystallized intrinsic and phosphorus-doped Si-nanocrystals visualized by Kelvin probe force microscopy

    SciTech Connect (OSTI)

    Xu, Jie; Xu, Jun Lu, Peng; Shan, Dan; Li, Wei; Chen, Kunji

    2014-10-07

    Isolated intrinsic and phosphorus doped (P-doped) Si-nanocrystals (Si-NCs) on n- and p-Si substrates are fabricated by excimer laser crystallization techniques. The formation of Si-NCs is confirmed by atomic force microscopy (AFM) and conductive AFM measurements. Kelvin probe force microscopy (KPFM) is then carried out to visualize the trapped charges in a single Si-NC dot which derives from the charge transfer between Si-NCs and Si substrates due to their different Fermi levels. The laser crystallized P-doped Si-NCs have a similar Fermi level around the mid-gap to the intrinsic counterparts, which might be caused by the inactivated impurity atoms or the surface states-related Fermi level pinning. A clear rise of the Fermi level in P-doped Si-NCs is observed after a short time thermal annealing treatment, indicating the activation of dopants in Si-NCs. Moreover, the surface charge quantity can be estimated using a simple parallel plate capacitor model for a quantitative understanding of the KPFM results at the nanoscale.

  20. The IQ-wall and IQ-station -- harnessing our collective intelligence to realize the potential of ultra-resolution and immersive visualization

    SciTech Connect (OSTI)

    Eric A. Wernert; William R. Sherman; Chris Eller; David Reagan; Patrick D. Beard; Eric T. Whiting; Patrick O'Leary

    2012-03-01

    We present a pair of open-recipe, affordably-priced, easy-to-integrate, and easy-to-use visualization systems. The IQ-wall is an ultra-resolution tiled display wall that scales up to 24 screens with a single PC. The IQ-station is a semi-immersive display system that utilizes commodity stereoscopic displays, lower cost tracking systems, and touch overlays. These systems have been designed to support a wide range of research, education, creative activities, and information presentations. They were designed to work equally well as stand-alone installations or as part of a larger distributed visualization ecosystem. We detail the hardware and software components of these systems, describe our deployments and experiences in a variety of research lab and university environments, and share our insights for effective support and community development.