National Library of Energy BETA

Sample records for vcrs visual contrast

  1. HPC Visualization

    SciTech Connect (OSTI)

    Monroe, Laura Marie

    2015-04-28

    A brief overview of the Los Alamos National Laboratory’s visualization capabilities and how projects benefits from these.

  2. Visual Breakout

    Broader source: Energy.gov [DOE]

    Visual Breakout of the Cummulative Barrels of Oil Recovered by the Discoverer Enterprise, Q4000 and HP1. Updated through 12:00 AM on July 16, 2010.

  3. Nessus Visualization

    Energy Science and Technology Software Center (OSTI)

    2012-10-01

    NV is a visualization tool for exploring vulnerabilities within a network. The data is created with a vulnerability assessment tool, such as Nessus (http://www.tenable.com/products/nessus).

  4. VISUAL-SOLAR

    Energy Science and Technology Software Center (OSTI)

    003661IBMPC00 Visual-SOLAR: Modeling and Visualization of Solar Radiation Potential on Individual Building Rooftops

  5. Nuclear magnetic resonance contrast agents

    DOE Patents [OSTI]

    Smith, P.H.; Brainard, J.R.; Jarvinen, G.D.; Ryan, R.R.

    1997-12-30

    A family of contrast agents for use in magnetic resonance imaging and a method of enhancing the contrast of magnetic resonance images of an object by incorporating a contrast agent of this invention into the object prior to forming the images or during formation of the images. A contrast agent of this invention is a paramagnetic lanthanide hexaazamacrocyclic molecule, where a basic example has the formula LnC{sub 16}H{sub 14}N{sub 6}. Important applications of the invention are in medical diagnosis, treatment, and research, where images of portions of a human body are formed by means of magnetic resonance techniques. 10 figs.

  6. Nuclear magnetic resonance contrast agents

    DOE Patents [OSTI]

    Smith, Paul H.; Brainard, James R.; Jarvinen, Gordon D.; Ryan, Robert R.

    1997-01-01

    A family of contrast agents for use in magnetic resonance imaging and a method of enhancing the contrast of magnetic resonance images of an object by incorporating a contrast agent of this invention into the object prior to forming the images or during formation of the images. A contrast agent of this invention is a paramagnetic lanthanide hexaazamacrocyclic molecule, where a basic example has the formula LnC.sub.16 H.sub.14 N.sub.6. Important applications of the invention are in medical diagnosis, treatment, and research, where images of portions of a human body are formed by means of magnetic resonance techniques.

  7. ESnet Visualization Widgets

    Energy Science and Technology Software Center (OSTI)

    2012-07-01

    The ESnet Visualization widgets are various data visualization widgets for use in web browsers to aid in the visualization of computer networks. In particular the widgets are targetted at displaying timeseries and topology data. They were developed for use in the MyESnet portal but are general enough to be used other places. The widgets are built using the d3.js library.

  8. Development of neutron tomography and phase contrast imaging technique

    SciTech Connect (OSTI)

    Kashyap, Y. S.; Agrawal, Ashish; Sarkar, P. S.; Shukla, Mayank; Sinha, Amar

    2013-02-05

    This paper presents design and development of a state of art neutron imaging technique at CIRUS reactor with special reference for techniques adopted for tomography and phase contrast imaging applications. Different components of the beamline such as collimator, shielding, sample manipulator, digital imaging system were designed keeping in mind the requirements of data acquisition time and resolution. The collimator was designed in such a way that conventional and phase contrast imaging can be done using same collimator housing. We have done characterization of fuel pins, study of hydride blisters in pressure tubes hydrogen based cells, two phase flow visualization, and online study of locomotive parts etc. using neutron tomography and radiography technique. We have also done some studies using neutron phase contrast imaging technique on this beamline.

  9. Visual Resources | Open Energy Information

    Open Energy Info (EERE)

    Visual Resources Jump to: navigation, search Retrieved from "http:en.openei.orgwindex.php?titleVisualResources&oldid612333...

  10. Contrasting soil microbial community functional structures in...

    Office of Scientific and Technical Information (OSTI)

    Contrasting soil microbial community functional structures in two major landscapes of the Tibetan alpine meadow Prev Next Title: Contrasting soil microbial community...

  11. Visualization of electronic density

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Grosso, Bastien; Cooper, Valentino R.; Pine, Polina; Hashibon, Adham; Yaish, Yuval; Adler, Joan

    2015-04-22

    An atom’s volume depends on its electronic density. Although this density can only be evaluated exactly for hydrogen-like atoms, there are many excellent numerical algorithms and packages to calculate it for other materials. 3D visualization of charge density is challenging, especially when several molecular/atomic levels are intertwined in space. We explore several approaches to 3D charge density visualization, including the extension of an anaglyphic stereo visualization application based on the AViz package to larger structures such as nanotubes. We will describe motivations and potential applications of these tools for answering interesting questions about nanotube properties.

  12. Visualization of electronic density

    SciTech Connect (OSTI)

    Grosso, Bastien; Cooper, Valentino R.; Pine, Polina; Hashibon, Adham; Yaish, Yuval; Adler, Joan

    2015-04-22

    An atoms volume depends on its electronic density. Although this density can only be evaluated exactly for hydrogen-like atoms, there are many excellent numerical algorithms and packages to calculate it for other materials. 3D visualization of charge density is challenging, especially when several molecular/atomic levels are intertwined in space. We explore several approaches to 3D charge density visualization, including the extension of an anaglyphic stereo visualization application based on the AViz package to larger structures such as nanotubes. We will describe motivations and potential applications of these tools for answering interesting questions about nanotube properties.

  13. Visualizations Image Gallery

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Act NIMROD 1 NIMROD Simulation 744889477276295a0862c.jpg A new Approach to Water Desalination map800-600.jpg Planck Cosmic Microwave Background electrons0000.png Visualization ...

  14. Notes for Visualization Requirememnts

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Notes for Vis Requirements Notes for Visualization Requirememnts Notes from June 5, 2002, Visualization Requirements for DOE-Sponsored Computational Science and Engineering Applications A DOE Workshop to Be Held 
at Lawrence Berkeley National Laboratory,
Berkeley, California, June 5, 2002 Workshop Co-organizers: Bernd Hamann 
University of California-Davis Lawrence Berkeley National Lab. E. Wes Bethel 
Lawrence Berkeley National Lab. Horst D. Simon
Lawrence Berkeley National Lab.

  15. Extreme Scale Visual Analytics

    SciTech Connect (OSTI)

    Steed, Chad A; Potok, Thomas E; Pullum, Laura L; Ramanathan, Arvind; Shipman, Galen M; Thornton, Peter E; Potok, Thomas E

    2013-01-01

    Given the scale and complexity of today s data, visual analytics is rapidly becoming a necessity rather than an option for comprehensive exploratory analysis. In this paper, we provide an overview of three applications of visual analytics for addressing the challenges of analyzing climate, text streams, and biosurveilance data. These systems feature varying levels of interaction and high performance computing technology integration to permit exploratory analysis of large and complex data of global significance.

  16. TRANSIMS Visualizations at TRACC

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualizations at TRACC TRACC is currently actively developing two separate visualization applications. One of these applications is 'Metropolis', developed by NCSA (the National Center for Supercomputing Applications), targets an interactive model that allows a modeler to navigate in three-dimensional space and time while displaying moving vehicles, dynamic volumes on the links, and many more such dynamic network features. The software is being developed based on OpenGL, and is comparable to

  17. Visualizations for Real-time Pricing Demonstration

    SciTech Connect (OSTI)

    Marinovici, Maria C.; Hammerstrom, Janelle L.; Widergren, Steven E.; Dayley, Greg K.

    2014-10-13

    In this paper, the visualization tools created for monitoring the operations of a real-time pricing demonstration system that runs at a distribution feeder level are presented. The information these tools provide gives insights into demand behavior from automated price responsive devices, distribution feeder characteristics, impact of weather on system’s development, and other significant dynamics. Given the large number of devices that bid into a feeder-level real-time electricity market, new techniques are explored to summarize the present state of the system and contrast that with previous trends as well as future projections. To better understand the system behavior and correctly inform decision-making procedures, effective visualization of the data is imperative.

  18. Robotic Intelligence Kernel: Visualization

    Energy Science and Technology Software Center (OSTI)

    2009-09-16

    The INL Robotic Intelligence Kernel-Visualization is the software that supports the user interface. It uses the RIK-C software to communicate information to and from the robot. The RIK-V illustrates the data in a 3D display and provides an operating picture wherein the user can task the robot.

  19. Multi-step contrast sensitivity gauge

    DOE Patents [OSTI]

    Quintana, Enrico C; Thompson, Kyle R; Moore, David G; Heister, Jack D; Poland, Richard W; Ellegood, John P; Hodges, George K; Prindville, James E

    2014-10-14

    An X-ray contrast sensitivity gauge is described herein. The contrast sensitivity gauge comprises a plurality of steps of varying thicknesses. Each step in the gauge includes a plurality of recesses of differing depths, wherein the depths are a function of the thickness of their respective step. An X-ray image of the gauge is analyzed to determine a contrast-to-noise ratio of a detector employed to generate the image.

  20. Contrasting soil microbial community functional structures in...

    Office of Scientific and Technical Information (OSTI)

    two major landscapes of the Tibetan alpine meadow Prev Next Title: Contrasting soil microbial community functional structures in two major landscapes of the Tibetan alpine...

  1. Visualization | OpenEI Community

    Open Energy Info (EERE)

    Enabling Unique Visualization and Manipulation of Energy Data at Multiple Scales FRED Free Energy Data Map OpenEI Tool Visualization The U.S. Department of Energy, the Pacific...

  2. Incompatibility of Contrast Medium and Trisodium Citrate

    SciTech Connect (OSTI)

    Delcour, Christian Bruninx, Guy

    2013-02-15

    To test the compatibility of trisodium citrate, a catheter lock solution, with iodinated contrast medium. Iohexol, iobitridol, iodixanol, ioxaglate, ioxithalamate, iomeprol, and iopromide were tested. In all tests, 2 ml of contrast medium were mixed with 2 ml of trisodium citrate solution. Iodixanol and ioxaglate provoked a highly viscous gluelike precipitation when mixed with trisodium citrate. A brief transient precipitate was observed with iohexol, iomeprol, and ioxithalamate. Permanent precipitation occurred with iobitridol and iopromide. One must be aware of the potential for precipitation when contrast medium is mixed with trisodium citrate solution. Before trisodium citrate solution is injected, the catheter should be thoroughly flushed with saline if a contrast medium has previously been injected through it.

  3. X-ray computed tomography of wood-adhesive bondlines: Attenuation and phase-contrast effects

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Paris, Jesse L.; Kamke, Frederick A.; Xiao, Xianghui

    2015-07-29

    Microscale X-ray computed tomography (XCT) is discussed as a technique for identifying 3D adhesive distribution in wood-adhesive bondlines. Visualization and material segmentation of the adhesives from the surrounding cellular structures require sufficient gray-scale contrast in the reconstructed XCT data. Commercial wood-adhesive polymers have similar chemical characteristics and density to wood cell wall polymers and therefore do not provide good XCT attenuation contrast in their native form. Here, three different adhesive types, namely phenol formaldehyde, polymeric diphenylmethane diisocyanate, and a hybrid polyvinyl acetate, are tagged with iodine such that they yield sufficient X-ray attenuation contrast. However, phase-contrast effects at material edgesmore » complicate image quality and segmentation in XCT data reconstructed with conventional filtered backprojection absorption contrast algorithms. A quantitative phase retrieval algorithm, which isolates and removes the phase-contrast effect, was demonstrated. The paper discusses and illustrates the balance between material X-ray attenuation and phase-contrast effects in all quantitative XCT analyses of wood-adhesive bondlines.« less

  4. Methods of visualizing graphs

    DOE Patents [OSTI]

    Wong, Pak C.; Mackey, Patrick S.; Perrine, Kenneth A.; Foote, Harlan P.; Thomas, James J.

    2008-12-23

    Methods for visualizing a graph by automatically drawing elements of the graph as labels are disclosed. In one embodiment, the method comprises receiving node information and edge information from an input device and/or communication interface, constructing a graph layout based at least in part on that information, wherein the edges are automatically drawn as labels, and displaying the graph on a display device according to the graph layout. In some embodiments, the nodes are automatically drawn as labels instead of, or in addition to, the label-edges.

  5. Assessment of contrast enhanced respiration managed cone-beam CT for image guided radiotherapy of intrahepatic tumors

    SciTech Connect (OSTI)

    Jensen, Nikolaj K. G.; Stewart, Errol; Imaging Research Lab, Robarts Research Institute, London, Ontario N6A 5B7; Imaging Program, Lawson Health Research Institute, London, Ontario N6C 2R5 ; Lock, Michael; Fisher, Barbara; Department of Oncology, University of Western Ontario, London, Ontario N6A 4L6 ; Kozak, Roman; Chen, Jeff; Department of Oncology, University of Western Ontario, London, Ontario N6A 4L6; Department of Medical Biophysics, University of Western Ontario, London, Ontario N6A 5C1 ; Lee, Ting-Yim; Imaging Research Lab, Robarts Research Institute, London, Ontario N6A 5B7; Imaging Program, Lawson Health Research Institute, London, Ontario N6C 2R5; Department of Oncology, University of Western Ontario, London, Ontario N6A 4L6; Department of Medical Biophysics, University of Western Ontario, London, Ontario N6A 5C1 ; Wong, Eugene; Department of Oncology, University of Western Ontario, London, Ontario N6A 4L6; Department of Medical Biophysics, University of Western Ontario, London, Ontario N6A 5C1; Department of Physics and Astronomy, University of Western Ontario, London, Ontario N6A 3K7

    2014-05-15

    Purpose: Contrast enhancement and respiration management are widely used during image acquisition for radiotherapy treatment planning of liver tumors along with respiration management at the treatment unit. However, neither respiration management nor intravenous contrast is commonly used during cone-beam CT (CBCT) image acquisition for alignment prior to radiotherapy. In this study, the authors investigate the potential gains of injecting an iodinated contrast agent in combination with respiration management during CBCT acquisition for liver tumor radiotherapy. Methods: Five rabbits with implanted liver tumors were subjected to CBCT with and without motion management and contrast injection. The acquired CBCT images were registered to the planning CT to determine alignment accuracy and dosimetric impact. The authors developed a simulation tool for simulating contrast-enhanced CBCT images from dynamic contrast enhanced CT imaging (DCE-CT) to determine optimal contrast injection protocols. The tool was validated against contrast-enhanced CBCT of the rabbit subjects and was used for five human patients diagnosed with hepatocellular carcinoma. Results: In the rabbit experiment, when neither motion management nor contrast was used, tumor centroid misalignment between planning image and CBCT was 9.2 mm. This was reduced to 2.8?mm when both techniques were employed. Tumors were not visualized in clinical CBCT images of human subjects. Simulated contrast-enhanced CBCT was found to improve tumor contrast in all subjects. Different patients were found to require different contrast injections to maximize tumor contrast. Conclusions: Based on the authors animal study, respiration managed contrast enhanced CBCT improves IGRT significantly. Contrast enhanced CBCT benefits from patient specific tracer kinetics determined from DCE-CT.

  6. MRI contrast agents and high-throughput screening by MRI

    DOE Patents [OSTI]

    Lu, Yi; Yigit, Mehmet Veysel; Mazumdar, Debapriya

    2013-10-29

    The present invention provides an MRI contrast agent, comprising: MRI contrast agent particles, and oligonucleotides, attached to the particles.

  7. An Assessment of Visual Testing

    SciTech Connect (OSTI)

    Cumblidge, Stephen E.; Anderson, Michael T.; Doctor, Steven R.

    2004-11-01

    In response to increasing interest from nuclear utilities in replacing some volumetric examinations of nuclear reactor components with remote visual testing, the Pacific Northwest National Laboratory has examined the capabilities of remote visual testing for the Nuclear Regulatory Commission. This report describes visual testing and explores the visual acuities of the camera systems used to examine nuclear reactor components. The types and sizes of cracks typically found in nuclear reactor components are reviewed. The current standards in visual testing are examined critically, and several suggestions for improving these standards are proposed. Also proposed for future work is a round robin test to determine the effectiveness of visual tests and experimental studies to determine the values for magnification and resolution needed to reliably image very tight cracks.

  8. Scientific Visualization, Seeing the Unseeable

    ScienceCinema (OSTI)

    LBNL

    2009-09-01

    June 24, 2008 Berkeley Lab lecture: Scientific visualization transforms abstract data into readily comprehensible images, provide a vehicle for "seeing the unseeable," and play a central role in bo... June 24, 2008 Berkeley Lab lecture: Scientific visualization transforms abstract data into readily comprehensible images, provide a vehicle for "seeing the unseeable," and play a central role in both experimental and computational sciences. Wes Bethel, who heads the Scientific Visualization Group in the Computational Research Division, presents an overview of visualization and computer graphics, current research challenges, and future directions for the field.

  9. Phase contrast portal imaging using synchrotron radiation

    SciTech Connect (OSTI)

    Umetani, K.; Kondoh, T.

    2014-07-15

    Microbeam radiation therapy is an experimental form of radiation treatment with great potential to improve the treatment of many types of cancer. We applied a synchrotron radiation phase contrast technique to portal imaging to improve targeting accuracy for microbeam radiation therapy in experiments using small animals. An X-ray imaging detector was installed 6.0 m downstream from an object to produce a high-contrast edge enhancement effect in propagation-based phase contrast imaging. Images of a mouse head sample were obtained using therapeutic white synchrotron radiation with a mean beam energy of 130 keV. Compared to conventional portal images, remarkably clear images of bones surrounding the cerebrum were acquired in an air environment for positioning brain lesions with respect to the skull structure without confusion with overlapping surface structures.

  10. Data visualization methods, data visualization devices, data visualization apparatuses, and articles of manufacture

    DOE Patents [OSTI]

    Turner, Alan E.; Crow, Vernon L.; Payne, Deborah A.; Hetzler, Elizabeth G.; Cook, Kristin A.; Cowley, Wendy E.

    2015-06-30

    Data visualization methods, data visualization devices, data visualization apparatuses, and articles of manufacture are described according to some aspects. In one aspect, a data visualization method includes accessing a plurality of initial documents at a first moment in time, first processing the initial documents providing processed initial documents, first identifying a plurality of first associations of the initial documents using the processed initial documents, generating a first visualization depicting the first associations, accessing a plurality of additional documents at a second moment in time after the first moment in time, second processing the additional documents providing processed additional documents, second identifying a plurality of second associations of the additional documents and at least some of the initial documents, wherein the second identifying comprises identifying using the processed initial documents and the processed additional documents, and generating a second visualization depicting the second associations.

  11. Exogenous contrast agents for thermoacoustic imaging: An investigation into the underlying sources of contrast

    SciTech Connect (OSTI)

    Ogunlade, Olumide Beard, Paul

    2015-01-15

    Purpose: Thermoacoustic imaging at microwave excitation frequencies is limited by the low differential contrast exhibited by high water content tissues. To overcome this, exogenous thermoacoustic contrast agents based on gadolinium compounds, iron oxide, and single wall carbon nanotubes have previously been suggested and investigated. However, these previous studies did not fully characterize the electric, magnetic, and thermodynamic properties of these agents thus precluding identification of the underlying sources of contrast. To address this, measurements of the complex permittivity, complex permeability, DC conductivity, and Grüneisen parameter have been made. These measurements allowed the origins of the contrast provided by each substance to be identified. Methods: The electric and magnetic properties of the contrast agents were characterized at 3 GHz using two rectangular waveguide cavities. The DC conductivity was measured separately using a conductivity meter. Thermoacoustic signals were then acquired and compared to those generated in water. Finally, 3D electromagnetic simulations were used to decouple the different contributions to the absorbed power density. Results: It was found that the gadolinium compounds provided appreciable electric contrast but not originating from the gadolinium itself. The contrast was either due to dissociation of the gadolinium salt which increased ionic conductivity or its nondissociated polar fraction which increased dielectric polarization loss or a combination of both. In addition, very high concentrations were required to achieve appreciable contrast, to the extent that the Grüneisen parameter increased significantly and became a source of contrast. Iron oxide particles were found to produce low but measurable dielectric contrast due to dielectric polarization loss, but this is attributed to the coating of the particles not the iron oxide. Single wall carbon nanotubes did not provide measurable contrast of any type

  12. Visualization Contest Applications due August 3

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualization Contest Applications due August 3 Visualization Contest Applications due August 3 June 22, 2012 by Francesca Verdier In support of the IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV) 2012's visualization contest, LDAV organizers are offering compute time to participants through a NERSC allocation awarded by ASCR. The LDAV Visualization Contest focuses on the area of visualization of extremely large datasets. The goal is to devise a visualization or a

  13. Mirror: Visually reflecting C{sup ++}

    SciTech Connect (OSTI)

    Orosco, R.; Campo, M.; Sole, J.P.

    1995-12-31

    Reflection is the ability of a system to inspect and change a model of itself. This ability allows to transparently control and extend the functionality of an existing system without performing any changes to the system itself. In dynamic object-oriented languages like CLOS or Smalltalk. the reflective ability is supported directly by the language. In C++, in contrast, reflection must be provided by some form of code annotation and pre-processing. In most cases, this approach either requires modification of the system code, or just supports the reflection of entire classes but not the reflection of determined objects. This work presents the Mirror environment that supports C++ reflective programming through visual association of meta-classes to classes. It allows full transparent reflection of objects using three-dimensional presentations of the different architecture levels. The environment adds reflective ability to C++ classes without any code modification visible to the user, as well as dynamically selective reflection of objects.

  14. Embedded high-contrast distributed grating structures

    DOE Patents [OSTI]

    Zubrzycki, Walter J.; Vawter, Gregory A.; Allerman, Andrew A.

    2002-01-01

    A new class of fabrication methods for embedded distributed grating structures is claimed, together with optical devices which include such structures. These new methods are the only known approach to making defect-free high-dielectric contrast grating structures, which are smaller and more efficient than are conventional grating structures.

  15. Phased Contrast X-Ray Imaging

    ScienceCinema (OSTI)

    Erin Miller

    2012-12-31

    The Pacific Northwest National Laboratory is developing a range of technologies to broaden the field of explosives detection. Phased contrast X-ray imaging, which uses silicon gratings to detect distortions in the X-ray wave front, may be applicable to mail or luggage scanning for explosives; it can also be used in detecting other contraband, small-parts inspection, or materials characterization.

  16. Contrast-to-noise ratio optimization for a prototype phase-contrast computed tomography scanner

    SciTech Connect (OSTI)

    Müller, Mark Yaroshenko, Andre; Velroyen, Astrid; Tapfer, Arne; Bech, Martin; Pauwels, Bart; Bruyndonckx, Peter; Sasov, Alexander; Pfeiffer, Franz

    2015-12-15

    In the field of biomedical X-ray imaging, novel techniques, such as phase-contrast and dark-field imaging, have the potential to enhance the contrast and provide complementary structural information about a specimen. In this paper, a first prototype of a preclinical X-ray phase-contrast CT scanner based on a Talbot-Lau interferometer is characterized. We present a study of the contrast-to-noise ratios for attenuation and phase-contrast images acquired with the prototype scanner. The shown results are based on a series of projection images and tomographic data sets of a plastic phantom in phase and attenuation-contrast recorded with varying acquisition settings. Subsequently, the signal and noise distribution of different regions in the phantom were determined. We present a novel method for estimation of contrast-to-noise ratios for projection images based on the cylindrical geometry of the phantom. Analytical functions, representing the expected signal in phase and attenuation-contrast for a circular object, are fitted to individual line profiles of the projection data. The free parameter of the fit function is used to estimate the contrast and the goodness of the fit is determined to assess the noise in the respective signal. The results depict the dependence of the contrast-to-noise ratios on the applied source voltages, the number of steps of the phase stepping routine, and the exposure times for an individual step. Moreover, the influence of the number of projection angles on the image quality of CT slices is investigated. Finally, the implications for future imaging purposes with the scanner are discussed.

  17. Visual Sample Plan

    Energy Science and Technology Software Center (OSTI)

    2007-10-25

    VSP selects the appropriate number and location of environmental samples to ensure that the results of statistical tests performed to provide input to risk decisions have the required confidence and performance. VSP Version 5.0 provides sample-size equations or algorithms needed by specific statistical tests appropriate for specific environmental sampling objectives. It also provides data quality assessment and statistical analysis functions to support evaluation of the data and determine whether the data support decisions regarding sitesmore » suspected of contamination. The easy-to-use program is highly visual and graphic. VSP runs on personal computers with Microsoft Windows operating systems (98, NT, 2000, Millennium Edition, CE, and XP) Designed primarily for project managers and users without expertise in statistics, VSP is applicable to two- and three-dimensional populations to be sampled (e.g., rooms and buildings, surface soil, a defined layer of subsurface soil, water bodies, and other similar applications) for studies of environmental quality. VSP is also applicable for designing sampling plans for assessing chem./rad/bio threat and hazard identification within rooms and buildings, and for designing geophysical surveys for UXO identification.« less

  18. Phase contrast in high resolution electron microscopy

    DOE Patents [OSTI]

    Rose, H.H.

    1975-09-23

    This patent relates to a device for developing a phase contrast signal for a scanning transmission electron microscope. The lens system of the microscope is operated in a condition of defocus so that predictable alternate concentric regions of high and low electron density exist in the cone of illumination. Two phase detectors are placed beneath the object inside the cone of illumination, with the first detector having the form of a zone plate, each of its rings covering alternate regions of either higher or lower electron density. The second detector is so configured that it covers the regions of electron density not covered by the first detector. Each detector measures the number of electrons incident thereon and the signal developed by the first detector is subtracted from the signal developed by the record detector to provide a phase contrast signal. (auth)

  19. Collaboration Topics - Visualization | National Nuclear Security

    National Nuclear Security Administration (NNSA)

    Administration | (NNSA) Visualization This collaboration area focuses on visualization and data analysis and centers on the open source development of the Visualization Toolkit (VTK), which forms the basis of our customized visualization and analysis tools (ParaView, VisIt and LOVE). We are partnering on common VTK needs and working on methods for visualizing and analyzing data on advanced architectures that are memory and I/O constrained. Accomplishments 1) Portions of the CEA visualization

  20. Laser speckle contrast imaging of skin blood perfusion responses...

    Office of Scientific and Technical Information (OSTI)

    Laser speckle contrast imaging of skin blood perfusion responses induced by laser coagulation Citation Details In-Document Search Title: Laser speckle contrast imaging of skin ...

  1. Contrasting behavior of intermediate-range order structures in...

    Office of Scientific and Technical Information (OSTI)

    Journal Article: Contrasting behavior of intermediate-range order structures in jadeite glass and melt Citation Details In-Document Search Title: Contrasting behavior of ...

  2. Visualizing Individual Carbon Nanotubes with Optical Microscopy...

    Office of Scientific and Technical Information (OSTI)

    Published Article: Visualizing Individual Carbon Nanotubes with Optical Microscopy Title: Visualizing Individual Carbon Nanotubes with Optical Microscopy Authors: Novak, Michael A. ...

  3. Visualization of Bacterial Microcompartment Facet Assembly Using...

    Office of Scientific and Technical Information (OSTI)

    Visualization of Bacterial Microcompartment Facet Assembly Using High-Speed Atomic Force Microscopy Prev Next Title: Visualization of Bacterial Microcompartment Facet ...

  4. Visual Design Group | The Ames Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visual Design Group alternative text alternative text alternative text alternative text alternative text alternative text alternative text alternative text The Visual Design Group ...

  5. Visualization Gallery from the Computational Research Division...

    Office of Scientific and Technical Information (OSTI)

    Particle Acceleration Data; 2) Visualization of Microearthquake Data from Enhanced Geothermal Systems; 3) PointCloudXplore: Visualization and Analysis of 3D Gene Expression Data; ...

  6. NREL: Energy Systems Integration Facility - Visualization of...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualization of Electric Power System Information Workshop The Energy Systems Integration Facility workshop, Visualization of Electric Power System Information, was held September...

  7. Visual Design Group | The Ames Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visual Design Group Ames Laboratory Logos You are here Home Visual Design Group Graphics Services supports the design, printing and production needs of the Ames Laboratory. For...

  8. Visualization Gallery from the Computational Research Division...

    Office of Scientific and Technical Information (OSTI)

    Visualization Gallery from the Computational Research Division at Lawrence Berkeley ... Data from Enhanced Geothermal Systems; 3) PointCloudXplore: Visualization and ...

  9. Ocean Thermal Extractable Energy Visualization: Final Technical...

    Office of Environmental Management (EM)

    Ocean Thermal Extractable Energy Visualization: Final Technical Report Ocean Thermal Extractable Energy Visualization: Final Technical Report Report about the Ocean Thermal ...

  10. Dynamic visualization of data streams

    DOE Patents [OSTI]

    Wong, Pak Chung; Foote, Harlan P.; Adams, Daniel R.; Cowley, Wendy E.; Thomas, James J.

    2009-07-07

    One embodiment of the present invention includes a data communication subsystem to receive a data stream, and a data processing subsystem responsive to the data communication subsystem to generate a visualization output based on a group of data vectors corresponding to a first portion of the data stream. The processing subsystem is further responsive to a change in rate of receipt of the data to modify the visualization output with one or more other data vectors corresponding to a second portion of the data stream as a function of eigenspace defined with the group of data vectors. The system further includes a display device responsive to the visualization output to provide a corresponding visualization.

  11. Data mining and visualization techniques

    DOE Patents [OSTI]

    Wong, Pak Chung; Whitney, Paul; Thomas, Jim

    2004-03-23

    Disclosed are association rule identification and visualization methods, systems, and apparatus. An association rule in data mining is an implication of the form X.fwdarw.Y where X is a set of antecedent items and Y is the consequent item. A unique visualization technique that provides multiple antecedent, consequent, confidence, and support information is disclosed to facilitate better presentation of large quantities of complex association rules.

  12. Photoacoustic phasoscopy super-contrast imaging

    SciTech Connect (OSTI)

    Gao, Fei; Feng, Xiaohua; Zheng, Yuanjin

    2014-05-26

    Phasoscopy is a recently proposed concept correlating electromagnetic (EM) absorption and scattering properties based on energy conservation. Phase information can be extracted from EM absorption induced acoustic wave and scattered EM wave for biological tissue characterization. In this paper, an imaging modality, termed photoacoustic phasoscopy imaging (PAPS), is proposed and verified experimentally based on phasoscopy concept with laser illumination. Both endogenous photoacoustic wave and scattered photons are collected simultaneously to extract the phase information. The PAPS images are then reconstructed on vessel-mimicking phantom and ex vivo porcine tissues to show significantly improved contrast than conventional photoacoustic imaging.

  13. Computing and Visualizing Reachable Volumes for Maneuvering Satellites

    SciTech Connect (OSTI)

    Jiang, M; de Vries, W H; Pertica, A J; Olivier, S S

    2011-09-11

    Detecting and predicting maneuvering satellites is an important problem for Space Situational Awareness. The spatial envelope of all possible locations within reach of such a maneuvering satellite is known as the Reachable Volume (RV). As soon as custody of a satellite is lost, calculating the RV and its subsequent time evolution is a critical component in the rapid recovery of the satellite. In this paper, we present a Monte Carlo approach to computing the RV for a given object. Essentially, our approach samples all possible trajectories by randomizing thrust-vectors, thrust magnitudes and time of burn. At any given instance, the distribution of the 'point-cloud' of the virtual particles defines the RV. For short orbital time-scales, the temporal evolution of the point-cloud can result in complex, multi-reentrant manifolds. Visualization plays an important role in gaining insight and understanding into this complex and evolving manifold. In the second part of this paper, we focus on how to effectively visualize the large number of virtual trajectories and the computed RV. We present a real-time out-of-core rendering technique for visualizing the large number of virtual trajectories. We also examine different techniques for visualizing the computed volume of probability density distribution, including volume slicing, convex hull and isosurfacing. We compare and contrast these techniques in terms of computational cost and visualization effectiveness, and describe the main implementation issues encountered during our development process. Finally, we will present some of the results from our end-to-end system for computing and visualizing RVs using examples of maneuvering satellites.

  14. Data sonification and sound visualization.

    SciTech Connect (OSTI)

    Kaper, H. G.; Tipei, S.; Wiebel, E.; Mathematics and Computer Science; Univ. of Illinois

    1999-07-01

    Sound can help us explore and analyze complex data sets in scientific computing. The authors describe a digital instrument for additive sound synthesis (Diass) and a program to visualize sounds in a virtual reality environment (M4Cave). Both are part of a comprehensive music composition environment that includes additional software for computer-assisted composition and automatic music notation.

  15. VCAT: Visual Crosswalk Analysis Tool

    SciTech Connect (OSTI)

    Cleland, Timothy J.; Forslund, David W.; Cleland, Catherine A.

    2012-08-31

    VCAT is a knowledge modeling and analysis tool. It was synthesized from ideas in functional analysis, business process modeling, and complex network science. VCAT discovers synergies by analyzing natural language descriptions. Specifically, it creates visual analytic perspectives that capture intended organization structures, then overlays the serendipitous relationships that point to potential synergies within an organization or across multiple organizations.

  16. Absorption and Phase Contrast X-Ray Imaging in Paleontology Using Laboratory and Synchrotron Sources

    SciTech Connect (OSTI)

    Bidola, Pidassa; Stockmar, Marco; Achterhold, Klaus; Pfeiffer, Franz; Pacheco, Mirian L.A.F.; Soriano, Carmen; Beckmann, Felix; Herzen, Julia

    2015-10-01

    X-ray micro-computed tomography (CT) is commonly used for imaging of samples in biomedical or materials science research. Owing to the ability to visualize a sample in a nondestructive way, X-ray CT is perfectly suited to inspect fossilized specimens, which are mostly unique or rare. In certain regions of the world where important sedimentation events occurred in the Precambrian geological time, several fossilized animals are studied to understand questions related to their origin, environment, and life evolution. This article demonstrates the advantages of applying absorption and phase-contrast CT on the enigmatic fossil Corumbella werneri, one of the oldest known animals capable of building hard parts, originally discovered in Corumba (Brazil). Different tomographic setups were tested to visualize the fossilized inner structures: a commercial laboratory-based CT device, two synchrotron-based imaging setups using conventional absorption and propagation-based phase contrast, and a commercial X-ray microscope with a lens-coupled detector system, dedicated for radiography and tomography. Based on our results we discuss the strengths and weaknesses of the different imaging setups for paleontological studies.

  17. Visualization Graph | OpenEI Community

    Open Energy Info (EERE)

    8 August, 2012 - 12:37 New Gapminder Visualizations Added EIA Energy data Gapminder OECD OpenEI SEDS Visualization Graph OpenEI now features some cool new Gapminder...

  18. Energy Integration Visualization Room (Fact Sheet)

    SciTech Connect (OSTI)

    Not Available

    2012-08-01

    This two-page fact sheet describes the new Energy Integration Visualization Room in the ESIF and talks about some of the capabilities and unique visualization features of the the room.

  19. Visualization Contest Applications due August 3

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Contest Applications due August 3 June 22, 2012 by Francesca Verdier In support of the IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV) 2012's visualization...

  20. Visual Patent Search - Energy Innovation Portal

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visual Patent Search Site Map Printable Version Share this resource About Search Categories (15) Advanced Materials Biomass and Biofuels Building Energy Efficiency Electricity Transmission Energy Analysis Energy Storage Geothermal Hydrogen and Fuel Cell Hydropower, Wave and Tidal Industrial Technologies Solar Photovoltaic Solar Thermal Startup America Vehicles and Fuels Wind Energy Partners (27) Visual Patent Search Success Stories Visual Patent Search Read the Energy.gov Article Visual Patent

  1. Visualization Clusters | Argonne Leadership Computing Facility

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Analytics and Visualization Visualization Cluster Cooley The primary purpose of Cooley is to analyze and visualize data produced on Mira. Equipped with state-of-the-art graphics processing units (GPUs), Cooley converts computational data from Mira into high-resolution visual representations. The resulting images, videos, and animations help users to better analyze and understand the data generated by Mira. Cooley can also be used for statistical analysis, helping to pinpoint trends in the

  2. Research Challenges for Visualization Software. (Journal Article...

    Office of Scientific and Technical Information (OSTI)

    Research Challenges for Visualization Software. Citation ... IEEE Computer Magazine. Research Org: Sandia National Laboratories Sponsoring Org: USDOE National Nuclear Security ...

  3. An interpersonal multimedia visualization system

    SciTech Connect (OSTI)

    Phillips, R.L.

    1990-01-01

    Media View is a computer program that provides a generic infrastructure for authoring and interacting with multimedia documents. Among its many applications is the ability to furnish a user with a comprehensive environment for analysis and visualization. With MediaView the user produces a document'' that contains mathematics, datasets and associated visualizations. From the dataset or embedded mathematics animated sequences can be produced in situ. The mathematical content of the document'' can be explored through manipulation with Mathematica {trademark}. Since the document'' is all digital, it can be shared with a co-worker on a local network or mailed electronically to a colleague at a distant site. Animations and any other substructure of the document'' persist through the mailing process and can be awakened at the destination by the recipient. 5 refs., 4 figs.

  4. Visualizing Cyber Security: Usable Workspaces

    SciTech Connect (OSTI)

    Fink, Glenn A.; North, Christopher L.; Endert, Alexander; Rose, Stuart J.

    2009-10-11

    An environment that supports cyber analytics work should enable multiple, simultaneous investigations, information foraging, and provide a solution space for organizing data. We describe our study of cyber security professionals and visualizations in a large, high-resolution display work environment. We discuss the tasks and needs of analysts that such an environment can support and present several prototypes designed to support these needs. We conclude with a usability evaluation of the prototypes and additional lessons learned.

  5. Cognitive Foundations for Visual Analytics

    SciTech Connect (OSTI)

    Greitzer, Frank L.; Noonan, Christine F.; Franklin, Lyndsey

    2011-02-25

    In this report, we provide an overview of scientific/technical literature on information visualization and VA. Topics discussed include an update and overview of the extensive literature search conducted for this study, the nature and purpose of the field, major research thrusts, and scientific foundations. We review methodologies for evaluating and measuring the impact of VA technologies as well as taxonomies that have been proposed for various purposes to support the VA community. A cognitive science perspective underlies each of these discussions.

  6. MemAxes Visualization Software

    Energy Science and Technology Software Center (OSTI)

    2014-08-28

    Hardware advancements such as Intel's PEBS and AMD's IBS, as well as software developments such as the perf_event API in Linux have made available the acquisition of memory access samples with performance information. MemAxes is a visualization and analysis tool for memory access sample data. By mapping the samples to their associated code, variables, node topology, and application dataset, MemAxes provides intuitive views of the data.

  7. Apparatus for separating particles utilizing engineered acoustic contrast capture particles

    DOE Patents [OSTI]

    Kaduchak, Gregory; Ward, Michael D

    2016-05-17

    An apparatus for separating particles from a medium includes a capillary defining a flow path therein that is in fluid communication with a medium source. The medium source includes engineered acoustic contrast capture particle having a predetermined acoustic contrast. The apparatus includes a vibration generator that is operable to produce at least one acoustic field within the flow path. The acoustic field produces a force potential minima for positive acoustic contrast particles and a force potential minima for negative acoustic contrast particles in the flow path and drives the engineered acoustic contrast capture particles to either the force potential minima for positive acoustic contrast particles or the force potential minima for negative acoustic contrast particles.

  8. Apparatus for separating particles utilizing engineered acoustic contrast capture particles

    DOE Patents [OSTI]

    Kaduchak, Gregory; Ward, Michael D.

    2011-12-27

    An apparatus for separating particles from a medium includes a capillary defining a flow path therein that is in fluid communication with a medium source. The medium source includes engineered acoustic contrast capture particle having a predetermined acoustic contrast. The apparatus includes a vibration generator that is operable to produce at least one acoustic field within the flow path. The acoustic field produces a force potential minima for positive acoustic contrast particles and a force potential minima for negative acoustic contrast particles in the flow path and drives the engineered acoustic contrast capture particles to either the force potential minima for positive acoustic contrast particles or the force potential minima for negative acoustic contrast particles.

  9. Apparatus for separating particles utilizing engineered acoustic contrast capture particles

    DOE Patents [OSTI]

    Kaduchak, Gregory; Ward, Michael D

    2014-10-21

    An apparatus for separating particles from a medium includes a capillary defining a flow path therein that is in fluid communication with a medium source. The medium source includes engineered acoustic contrast capture particle having a predetermined acoustic contrast. The apparatus includes a vibration generator that is operable to produce at least one acoustic field within the flow path. The acoustic field produces a force potential minima for positive acoustic contrast particles and a force potential minima for negative acoustic contrast particles in the flow path and drives the engineered acoustic contrast capture particles to either the force potential minima for positive acoustic contrast particles or the force potential minima for negative acoustic contrast particles.

  10. Visual Interface for Materials Simulations

    Energy Science and Technology Software Center (OSTI)

    2004-08-01

    VIMES (Visual Inteface for Materials Simulations) is a graphical user interface (GUI) for pre- and post-processing alomistic materials science calculations. The code includes tools for building and visualizing simple crystals, supercells, and surfaces, as well as tools for managing and modifying the input to Sandia materials simulations codes such as Quest (Peter Schultz, SNL 9235) and Towhee (Marcus Martin, SNL 9235). It is often useful to have a graphical interlace to construct input for materialsmore » simulations codes and to analyze the output of these programs. VIMES has been designed not only to build and visualize different materials systems, but also to allow several Sandia codes to be easier to use and analyze. Furthermore. VIMES has been designed to be reasonably easy to extend to new materials programs. We anticipate that users of Sandia materials simulations codes will use VIMCS to simplify the submission and analysis of these simulations. VIMES uses standard OpenGL graphics (as implemented in the Python programming language) to display the molecules. The algorithms used to rotate, zoom, and pan molecules are all standard applications using the OpenGL libraries. VIMES uses the Marching Cubes algorithm for isosurfacing 3D data such as molecular orbitals or electron densities around the molecules.« less

  11. Visual Interface for Materials Simulations

    SciTech Connect (OSTI)

    2004-08-01

    VIMES (Visual Inteface for Materials Simulations) is a graphical user interface (GUI) for pre- and post-processing alomistic materials science calculations. The code includes tools for building and visualizing simple crystals, supercells, and surfaces, as well as tools for managing and modifying the input to Sandia materials simulations codes such as Quest (Peter Schultz, SNL 9235) and Towhee (Marcus Martin, SNL 9235). It is often useful to have a graphical interlace to construct input for materials simulations codes and to analyze the output of these programs. VIMES has been designed not only to build and visualize different materials systems, but also to allow several Sandia codes to be easier to use and analyze. Furthermore. VIMES has been designed to be reasonably easy to extend to new materials programs. We anticipate that users of Sandia materials simulations codes will use VIMCS to simplify the submission and analysis of these simulations. VIMES uses standard OpenGL graphics (as implemented in the Python programming language) to display the molecules. The algorithms used to rotate, zoom, and pan molecules are all standard applications using the OpenGL libraries. VIMES uses the Marching Cubes algorithm for isosurfacing 3D data such as molecular orbitals or electron densities around the molecules.

  12. Visualization

    Office of Scientific and Technical Information (OSTI)

    ... as a search through a large tree of possible solutions. ... Guided by the energy function, it quickly creates a variety ... new functions to the source code and user interface simple. ...

  13. Visualization Tools for Adaptive Mesh Refinement Data

    SciTech Connect (OSTI)

    Weber, Gunther H.; Beckner, Vincent E.; Childs, Hank; Ligocki,Terry J.; Miller, Mark C.; Van Straalen, Brian; Bethel, E. Wes

    2007-05-09

    Adaptive Mesh Refinement (AMR) is a highly effective method for simulations that span a large range of spatiotemporal scales, such as astrophysical simulations that must accommodate ranges from interstellar to sub-planetary. Most mainstream visualization tools still lack support for AMR as a first class data type and AMR code teams use custom built applications for AMR visualization. The Department of Energy's (DOE's) Science Discovery through Advanced Computing (SciDAC) Visualization and Analytics Center for Enabling Technologies (VACET) is currently working on extending VisIt, which is an open source visualization tool that accommodates AMR as a first-class data type. These efforts will bridge the gap between general-purpose visualization applications and highly specialized AMR visual analysis applications. Here, we give an overview of the state of the art in AMR visualization research and tools and describe how VisIt currently handles AMR data.

  14. Visualization of Scalar Adaptive Mesh Refinement Data

    SciTech Connect (OSTI)

    VACET; Weber, Gunther; Weber, Gunther H.; Beckner, Vince E.; Childs, Hank; Ligocki, Terry J.; Miller, Mark C.; Van Straalen, Brian; Bethel, E. Wes

    2007-12-06

    Adaptive Mesh Refinement (AMR) is a highly effective computation method for simulations that span a large range of spatiotemporal scales, such as astrophysical simulations, which must accommodate ranges from interstellar to sub-planetary. Most mainstream visualization tools still lack support for AMR grids as a first class data type and AMR code teams use custom built applications for AMR visualization. The Department of Energy's (DOE's) Science Discovery through Advanced Computing (SciDAC) Visualization and Analytics Center for Enabling Technologies (VACET) is currently working on extending VisIt, which is an open source visualization tool that accommodates AMR as a first-class data type. These efforts will bridge the gap between general-purpose visualization applications and highly specialized AMR visual analysis applications. Here, we give an overview of the state of the art in AMR scalar data visualization research.

  15. Localized surface plasmon assisted contrast microscopy for ultrathin transparent specimens

    SciTech Connect (OSTI)

    Wei, Feifei; Lu, Dylan; Aguinaldo, Ryan; Ma, Yicong; Sinha, Sunil K.; Liu, Zhaowei

    2014-10-20

    We demonstrate a high contrast imaging technique, termed localized surface plasmon assisted contrast microscopy, by combining localized surface plasmon resonances (LSPR) and dark-field microscopy technique. Due to the sensitive response of LSPR to the refractive index of the surrounding media, this technique is capable of converting a small refractive index difference to a change in scattering intensity, resulting in a high-contrast, diffraction limited image of a thin unstained specimen with small, gradual refractive-index variation.

  16. Ocean Thermal Extractable Energy Visualization

    SciTech Connect (OSTI)

    Ascari, Matthew

    2012-10-28

    The Ocean Thermal Extractable Energy Visualization (OTEEV) project focuses on assessing the Maximum Practicably Extractable Energy (MPEE) from the world’s ocean thermal resources. MPEE is defined as being sustainable and technically feasible, given today’s state-of-the-art ocean energy technology. Under this project the OTEEV team developed a comprehensive Geospatial Information System (GIS) dataset and software tool, and used the tool to provide a meaningful assessment of MPEE from the global and domestic U.S. ocean thermal resources.

  17. Visual Analysis of Weblog Content

    SciTech Connect (OSTI)

    McColgin, David W.; Cramer, Nicholas O.; Gregory, Michelle L.; Payne, Deborah A.; Love, Douglas V.

    2007-03-26

    ABSTRACT In this demo we present an analytic tool that provides a comprehensive approach to weblog analysis. We have combined ingest tools that have been designed to work with the special characteristics of blog data with a mature visual analytic tool designed for in-depth document analysis. Using a subset of the Buzz Metrics data, we demonstrate how this combination of tools provides users with the capability to analyze blogs in multiple languages, investigate changes over time, and investigate the affect of blogs.

  18. Visual Analysis of Weblog Content

    SciTech Connect (OSTI)

    Gregory, Michelle L.; Payne, Deborah A.; McColgin, Dave; Cramer, Nick O.; Love, Douglas V.

    2007-03-26

    In recent years, one of the advances of the World Wide Web is social media and one of the fastest growing aspects of social media is the blogosphere. Blogs make content creation easy and are highly accessible through web pages and syndication. With their growing influence, a need has arisen to be able to monitor the opinions and insight revealed within their content. In this paper we describe a technical approach for analyzing the content of blog data using a visual analytic tool, IN-SPIRE, developed by Pacific Northwest National Laboratory. We highlight the capabilities of this tool that are particularly useful for information gathering from blog data.

  19. Visualizing Twenty Years of Applications

    SciTech Connect (OSTI)

    Potel, Mike; Wong, Pak C.

    2014-11-01

    This issue of IEEE Computer Graphics and Applications marks the 20th anniversary of the Applications department as a regular feature of the magazine. We thought it might be interesting to look back at the 20 years of Applications department articles to assess its evolution over that time. By aggregating all twenty years of articles and applying a little statistical and visual analytics, we’ve uncovered some interesting characteristics and trends we thought we’d share to mark this 20 year milestone.

  20. Visual-servoing optical microscopy

    DOE Patents [OSTI]

    Callahan, Daniel E.; Parvin, Bahram

    2009-06-09

    The present invention provides methods and devices for the knowledge-based discovery and optimization of differences between cell types. In particular, the present invention provides visual servoing optical microscopy, as well as analysis methods. The present invention provides means for the close monitoring of hundreds of individual, living cells over time: quantification of dynamic physiological responses in multiple channels; real-time digital image segmentation and analysis; intelligent, repetitive computer-applied cell stress and cell stimulation; and the ability to return to the same field of cells for long-term studies and observation. The present invention further provides means to optimize culture conditions for specific subpopulations of cells.

  1. Visual-servoing optical microscopy

    DOE Patents [OSTI]

    Callahan, Daniel E.; Parvin, Bahram

    2011-05-24

    The present invention provides methods and devices for the knowledge-based discovery and optimization of differences between cell types. In particular, the present invention provides visual servoing optical microscopy, as well as analysis methods. The present invention provides means for the close monitoring of hundreds of individual, living cells over time; quantification of dynamic physiological responses in multiple channels; real-time digital image segmentation and analysis; intelligent, repetitive computer-applied cell stress and cell stimulation; and the ability to return to the same field of cells for long-term studies and observation. The present invention further provides means to optimize culture conditions for specific subpopulations of cells.

  2. Visual-servoing optical microscopy

    DOE Patents [OSTI]

    Callahan, Daniel E; Parvin, Bahram

    2013-10-01

    The present invention provides methods and devices for the knowledge-based discovery and optimization of differences between cell types. In particular, the present invention provides visual servoing optical microscopy, as well as analysis methods. The present invention provides means for the close monitoring of hundreds of individual, living cells over time; quantification of dynamic physiological responses in multiple channels; real-time digital image segmentation and analysis; intelligent, repetitive computer-applied cell stress and cell stimulation; and the ability to return to the same field of cells for long-term studies and observation. The present invention further provides means to optimize culture conditions for specific subpopulations of cells.

  3. Contrasting Behavior of Carbon Nucleation in the Initial Stages...

    Office of Scientific and Technical Information (OSTI)

    of Graphene Epitaxial Growth on Stepped Metal Surfaces Citation Details In-Document Search Title: Contrasting Behavior of Carbon Nucleation in the Initial Stages of Graphene ...

  4. Visualizing Electric Vehicle Sales | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Visualizing Electric Vehicle Sales Visualizing Electric Vehicle Sales July 25, 2013 - 2:48pm Addthis Data compiled by Yan (Joann) Zhou at Argonne National Laboratory. (*) Sales from the second quarter of 2013 for Tesla Model S are based off of estimates provided by the Hybrid Market Dashboard. Data updated 1/20/15. Daniel Wood Daniel Wood Data Visualization and Cartographic Specialist, Office of Public Affairs More on eGallon: Read more about electric vehicle sales and eGallon's continued

  5. Video-Visuals | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Video-Visuals Video-Visuals See how we can generate clean, renewable energy from hot water sources deep beneath the Earth's surface. The video highlights the basic principles at work in geothermal energy production, and illustrates three different ways the Earth's heat can be converted into electricity. Multimedia resources at the United States Department of Energy help to message geothermal development visually through video, photographs, renderings of the subsurface, and resource maps. Video /

  6. Mini-review of Electron Density Visualization

    SciTech Connect (OSTI)

    Adler, Joan; Adler, Omri; Kreif, Meytal; Cohen, Or; Grosso, Bastien; Hashibon, Adham; Cooper, Valentino R

    2015-01-01

    We describe both educational and research oriented examples of electronic density visualization with AViz. Several detailed cases are presented and the procedures for their preparation are described.

  7. Collaboration Topics - Visualization | National Nuclear Security...

    National Nuclear Security Administration (NNSA)

    This collaboration area focuses on visualization and data analysis and centers on the open ... and analyzing data on advanced architectures that are memory and IO constrained. ...

  8. Magnetic field induced differential neutron phase contrast imaging

    SciTech Connect (OSTI)

    Strobl, M.; Treimer, W.; Walter, P.; Keil, S.; Manke, I.

    2007-12-17

    Besides the attenuation of a neutron beam penetrating an object, induced phase changes have been utilized to provide contrast in neutron and x-ray imaging. In analogy to differential phase contrast imaging of bulk samples, the refraction of neutrons by magnetic fields yields image contrast. Here, it will be reported how double crystal setups can provide quantitative tomographic images of magnetic fields. The use of magnetic air prisms adequate to split the neutron spin states enables a distinction of field induced phase shifts and these introduced by interaction with matter.

  9. Poster Thur Eve 16: 4DCT simulation with synchronized contrast injection of liver SBRT patients

    SciTech Connect (OSTI)

    Karotki, A.; Korol, R.; Milot, L.; Chu, W.; Chung, H. T.; Erler, D.

    2014-08-15

    Stereotactic body radiation therapy (SBRT) has recently emerged as a valid option for treating liver metastases. SBRT delivers highly conformai dose over a small number of fractions. As such it is particularly sensitive to the accuracy of target volume delineation by the radiation oncologist. However, contouring liver metastases remains challenging for the following reasons. First, the liver usually undergoes significant motion due to respiration. Second, liver metastases are often nearly indistinguishable from the surrounding tissue when using computed tomography (CT) for imaging making it difficult to identify and delineate them. Both problems can be overcome by using four dimensional CT (4DCT) synchronized with intravenous contrast injection. We describe a novel CT simulation process which involves two 4DCT scans. The first scan captures the tumor and immediately surrounding tissue which in turn reduces the 4DCT scan time so that it can be optimally timed with intravenous contrast injection. The second 4DCT scan covers a larger volume and is used as the primary CT dataset for dose calculation, as well as patient setup verification on the treatment unit. The combination of two 4DCT scans, short and long, allows visualization of the liver metastases over all phases of breathing cycle while simultaneously acquiring long enough 4DCT dataset suitable for planning and patient setup verification.

  10. Visualizing Electric Vehicle Sales | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Visualizing Electric Vehicle Sales Visualizing Electric Vehicle Sales Data compiled by Yan (Joann) Zhou at Argonne National Laboratory. (*) Sales from the second quarter of 2013 for Tesla Model S are based off of estimates provided by the Hybrid Market Dashboard. Data updated 1/20/15.

  11. Query-Driven Visualization and Analysis

    SciTech Connect (OSTI)

    Ruebel, Oliver; Bethel, E. Wes; Prabhat, Mr.; Wu, Kesheng

    2012-11-01

    This report focuses on an approach to high performance visualization and analysis, termed query-driven visualization and analysis (QDV). QDV aims to reduce the amount of data that needs to be processed by the visualization, analysis, and rendering pipelines. The goal of the data reduction process is to separate out data that is "scientifically interesting'' and to focus visualization, analysis, and rendering on that interesting subset. The premise is that for any given visualization or analysis task, the data subset of interest is much smaller than the larger, complete data set. This strategy---extracting smaller data subsets of interest and focusing of the visualization processing on these subsets---is complementary to the approach of increasing the capacity of the visualization, analysis, and rendering pipelines through parallelism. This report discusses the fundamental concepts in QDV, their relationship to different stages in the visualization and analysis pipelines, and presents QDV's application to problems in diverse areas, ranging from forensic cybersecurity to high energy physics.

  12. Occam's Razor and Petascale Visual Data Analysis

    SciTech Connect (OSTI)

    Bethel, E. Wes; Johnson, Chris; Ahern, Sean; Bell, John; Bremer, Peer-Timo; Childs, Hank; Cormier-Michel, Estelle; Day, Marc; Deines, Eduard; Fogal, Tom; Garth, Christoph; Geddes, Cameron; Hagen, Hans; Hamann, Bernd; Hansen, Charles; Jacobsen, Janet; Joy, Ken; Kruger, Jens; Meredith, Jeremy; Messmer, Peter; Ostrouchov, George; Pascucci, Valerio; Potter, Kristi; Prabhat, D.; Pugmire, David; Rubel, Oliver; Sanderson, Allen; Silva, Claudio; Ushizima, Daniela; Weber, Gunther; Whitlock, Brad; Wu, Kesheng

    2009-06-12

    One of the central challenges facing visualization research is how to effectively enable knowledge discovery. An effective approach will likely combine application architectures that are capable of running on today?s largest platforms to address the challenges posed by large data with visual data analysis techniques that help find, represent, and effectively convey scientifically interesting features and phenomena.

  13. SAMPLES Visualization Tools V1.0

    Energy Science and Technology Software Center (OSTI)

    2000-01-17

    The SAMPLE Visualization Tools CD consists of a 2D Process Visualizer, 3D Visualizer, and integration code for use with AutoCAD uner Windows NT. The tools are intended to be an add-on package to the SAMPLES (Sandia Agile MEMS Prototyping, Layout Tools, Education and Services). Program CD, a previously published Sandia software package. The 2D Process Visualizer creates 2D cross-section slice views of a MEMS (micro-electromechanical)design. Views are created for each step in the MEMS fabricationmore » process. The 2D viewer has capabilities to pan, zoom, step forward and backward to allow the user to inspect the design. The 3D Visualizer creates an extruded-model view of a MEMS design. The 3D viewer has capabilities to pan, zoom, and fly around the model to allow the user to inspect the design.« less

  14. Computer systems and methods for visualizing data

    DOE Patents [OSTI]

    Stolte, Chris; Hanrahan, Patrick

    2010-07-13

    A method for forming a visual plot using a hierarchical structure of a dataset. The dataset comprises a measure and a dimension. The dimension consists of a plurality of levels. The plurality of levels form a dimension hierarchy. The visual plot is constructed based on a specification. A first level from the plurality of levels is represented by a first component of the visual plot. A second level from the plurality of levels is represented by a second component of the visual plot. The dataset is queried to retrieve data in accordance with the specification. The data includes all or a portion of the dimension and all or a portion of the measure. The visual plot is populated with the retrieved data in accordance with the specification.

  15. Contrast from rotating frame relaxation by adiabatic pulses

    DOE Patents [OSTI]

    Michaeli, Shalom; Garwood, Michael G.; Ugurbil, Kamil; Sorce, Dennis J.

    2007-10-09

    This document discusses, among other things, a system and method for modulating transverse and longitudinal relaxation time contrast in a rotating frame based on a train of radio frequency pulses.

  16. Nanoparticle Research Creates Great Contrast | GE Global Research

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nanoparticle Research Creates Great Contrast Click to email this to a friend (Opens in new window) Share on Facebook (Opens in new window) Click to share (Opens in new window) ...

  17. Speckle contrast diffuse correlation tomography of complex turbid medium flow

    SciTech Connect (OSTI)

    Huang, Chong; Irwin, Daniel; Lin, Yu; Shang, Yu; He, Lian; Kong, Weikai; Yu, Guoqiang; Luo, Jia

    2015-07-15

    Purpose: Developed herein is a three-dimensional (3D) flow contrast imaging system leveraging advancements in the extension of laser speckle contrast imaging theories to deep tissues along with our recently developed finite-element diffuse correlation tomography (DCT) reconstruction scheme. This technique, termed speckle contrast diffuse correlation tomography (scDCT), enables incorporation of complex optical property heterogeneities and sample boundaries. When combined with a reflectance-based design, this system facilitates a rapid segue into flow contrast imaging of larger, in vivo applications such as humans. Methods: A highly sensitive CCD camera was integrated into a reflectance-based optical system. Four long-coherence laser source positions were coupled to an optical switch for sequencing of tomographic data acquisition providing multiple projections through the sample. This system was investigated through incorporation of liquid and solid tissue-like phantoms exhibiting optical properties and flow characteristics typical of human tissues. Computer simulations were also performed for comparisons. A uniquely encountered smear correction algorithm was employed to correct point-source illumination contributions during image capture with the frame-transfer CCD and reflectance setup. Results: Measurements with scDCT on a homogeneous liquid phantom showed that speckle contrast-based deep flow indices were within 12% of those from standard DCT. Inclusion of a solid phantom submerged below the liquid phantom surface allowed for heterogeneity detection and validation. The heterogeneity was identified successfully by reconstructed 3D flow contrast tomography with scDCT. The heterogeneity center and dimensions and averaged relative flow (within 3%) and localization were in agreement with actuality and computer simulations, respectively. Conclusions: A custom cost-effective CCD-based reflectance 3D flow imaging system demonstrated rapid acquisition of dense boundary

  18. Visual inspection reliability for precision manufactured parts

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    See, Judi E.

    2015-09-04

    Sandia National Laboratories conducted an experiment for the National Nuclear Security Administration to determine the reliability of visual inspection of precision manufactured parts used in nuclear weapons. In addition visual inspection has been extensively researched since the early 20th century; however, the reliability of visual inspection for nuclear weapons parts has not been addressed. In addition, the efficacy of using inspector confidence ratings to guide multiple inspections in an effort to improve overall performance accuracy is unknown. Further, the workload associated with inspection has not been documented, and newer measures of stress have not been applied.

  19. VisIt - 3D Scientific Visualization

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    VisIt VisIt - 3D Scientific Visualization Description and Overview VisIt is a point-and-click 3D scientific visualization application that supports most common visualization techniques (e.g., iso-contouring and volume rendering) on structured and unstructured grids. Due to its distributed and parallel architecture, VisIt is able to handle very large datasets interactively. In addition, VisIt is extensible, allowing users to add data loaders or additional analysis tools to VisIt. The NERSC

  20. Multimedia Analysis plus Visual Analytics = Multimedia Analytics

    SciTech Connect (OSTI)

    Chinchor, Nancy; Thomas, James J.; Wong, Pak C.; Christel, Michael; Ribarsky, Martin W.

    2010-10-01

    Multimedia analysis has focused on images, video, and to some extent audio and has made progress in single channels excluding text. Visual analytics has focused on the user interaction with data during the analytic process plus the fundamental mathematics and has continued to treat text as did its precursor, information visualization. The general problem we address in this tutorial is the combining of multimedia analysis and visual analytics to deal with multimedia information gathered from different sources, with different goals or objectives, and containing all media types and combinations in common usage.

  1. Visualizing Group II Intron Catalysis through the Stages of Splicing...

    Office of Scientific and Technical Information (OSTI)

    SciTech Connect Search Results Journal Article: Visualizing Group II Intron Catalysis through the Stages of Splicing Citation Details In-Document Search Title: Visualizing Group II ...

  2. Visualization and Analysis of 3D Gene Expression Data (Technical...

    Office of Scientific and Technical Information (OSTI)

    Technical Report: Visualization and Analysis of 3D Gene Expression Data Citation Details In-Document Search Title: Visualization and Analysis of 3D Gene Expression Data Recent...

  3. Linking Advanced Visualization and MATLAB for the Analysis of...

    Office of Scientific and Technical Information (OSTI)

    Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data Citation Details In-Document Search Title: Linking Advanced Visualization and MATLAB for the ...

  4. Abengoa Solar Visual Inspection Tool | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Abengoa Solar Visual Inspection Tool Abengoa Solar Visual Inspection Tool Presented at the ... - 27 2013, Golden, Colorado Final Report - Improved Large Aperture Collector Manufacturing

  5. Visualization of Fuel Cell Water Transport and Performance Characteriz...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Visualization of Fuel Cell Water Transport and Performance Characterization under Freezing ... More Documents & Publications Visualization of Fuel Cell Water Transport and ...

  6. Ontology-enriched Visualization of Human Anatomy

    SciTech Connect (OSTI)

    Pouchard, LC

    2005-12-20

    The project focuses on the problem of presenting a human anatomical 3D model associated with other types of human systemic information ranging from physiological to anatomical information while navigating the 3D model. We propose a solution that integrates a visual 3D interface and navigation features with the display of structured information contained in an ontology of anatomy where the structures of the human body are formally and semantically linked. The displayed and annotated anatomy serves as a visual entry point into a patient's anatomy, medical indicators and other information. The ontology of medical information provides labeling to the highlighted anatomical parts in the 3D display. Because of the logical organization and links between anatomical objects found in the ontology and associated 3D model, the analysis of a structure by a physician is greatly enhanced. Navigation within the 3D visualization and between this visualization and objects representing anatomical concepts within the model is also featured.

  7. BPA's Visual Guidelines Quick Guide - 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    35 The Visual Guidelines for BPA's Brand document can be found at www.bpa.govgotoBranding | Updated 2015 RGB 139 91 41 50 58 100 45 RGB 90 72 28 HEX 955300 HEX 5A481C 382 C...

  8. Visualizing Energy Resources Dynamically on Earth (VERDE)

    Energy Science and Technology Software Center (OSTI)

    2009-06-01

    VERDE is a software service that ingests data on real-time eneryg grid status and analyzes the data with models and algorithms presenting the output in a form that can be visualized by client spatio-temporal browsers

  9. Thematic World Wide Web Visualization System

    Energy Science and Technology Software Center (OSTI)

    1996-10-10

    WebTheme is a system designed to facilitate world wide web information access and retrieval through visualization. It consists of two principal pieces, a WebTheme Server which allows users to enter in a query and automatocally harvest and process information of interest, and a WebTheme browser, which allows users to work with both Galaxies and Themescape visualizations of their data within a JAVA capable world wide web browser. WebTheme is an Internet solution, meaning that accessmore » to the server and the resulting visualizations can all be performed through the use of a WWW browser. This allows users to access and interact with SPIRE (Spatial Paradigm for Information Retrieval and Exploration) based visualizations through a web browser regardless of what computer platforms they are running on. WebTheme is specifically designed to create databases by harvesting and processing WWW home pages available on the Internet.« less

  10. Finite Element Results Visualization for Unstructured Grids

    Energy Science and Technology Software Center (OSTI)

    1996-07-15

    GRIZ is a general-purpose post-processing application supporting interactive visualization of finite element analysis results on unstructured grids. In addition to basic pseudocolor renderings of state variables over the mesh surface, GRIZ provides modern visualization techniques such as isocontours and isosurfaces, cutting planes, vector field display, and particle traces. GRIZ accepts both command-line and mouse-driven input, and is portable to virtually any UNIX platform which provides Motif and OpenGl libraries.

  11. Building Adoption of Visual Analytics Software

    SciTech Connect (OSTI)

    Chinchor, Nancy; Cook, Kristin A.; Scholtz, Jean

    2012-01-05

    Adoption of technology is always difficult. Issues such as having the infrastructure necessary to support the technology, training for users, integrating the technology into current processes and tools, and having the time, managerial support, and necessary funds need to be addressed. In addition to these issues, the adoption of visual analytics tools presents specific challenges that need to be addressed. This paper discusses technology adoption challenges and approaches for visual analytics technologies.

  12. Differential phase contrast X-ray imaging system and components

    DOE Patents [OSTI]

    Stutman, Daniel; Finkenthal, Michael

    2014-07-01

    A differential phase contrast X-ray imaging system includes an X-ray illumination system, a beam splitter arranged in an optical path of the X-ray illumination system, and a detection system arranged in an optical path to detect X-rays after passing through the beam splitter.

  13. Dynamic Studies of Lung Fluid Clearance with Phase Contrast Imaging

    SciTech Connect (OSTI)

    Kitchen, Marcus J.; Williams, Ivan; Irvine, Sarah C.; Morgan, Michael J.; Paganin, David M.; Lewis, Rob A.; Pavlov, Konstantin; Hooper, Stuart B.; Wallace, Megan J.; Siu, Karen K. W.; Yagi, Naoto; Uesugi, Kentaro

    2007-01-19

    Clearance of liquid from the airways at birth is a poorly understood process, partly due to the difficulties of observing and measuring the distribution of air within the lung. Imaging dynamic processes within the lung in vivo with high contrast and spatial resolution is therefore a major challenge. However, phase contrast X-ray imaging is able to exploit inhaled air as a contrast agent, rendering the lungs of small animals visible due to the large changes in the refractive index at air/tissue interfaces. In concert with the high spatial resolution afforded by X-ray imaging systems (<100 {mu}m), propagation-based phase contrast imaging is ideal for studying lung development. To this end we have utilized intense, monochromatic synchrotron radiation, together with a fast readout CCD camera, to study fluid clearance from the lungs of rabbit pups at birth. Local rates of fluid clearance have been measured from the dynamic sequences using a single image phase retrieval algorithm.

  14. Analyzer-based phase-contrast imaging system using a micro focus x-ray source

    SciTech Connect (OSTI)

    Zhou, Wei; Majidi, Keivan; Brankov, Jovan G.

    2014-08-15

    Here we describe a new in-laboratory analyzer based phase contrast-imaging (ABI) instrument using a conventional X-ray tube source (CXS) aimed at bio-medical imaging applications. Phase contrast-imaging allows visualization of soft tissue details usually obscured in conventional X-ray imaging. The ABI system design and major features are described in detail. The key advantage of the presented system, over the few existing CXS ABI systems, is that it does not require high precision components, i.e., CXS, X-ray detector, and electro-mechanical components. To overcome a main problem introduced by these components, identified as temperature stability, the system components are kept at a constant temperature inside of three enclosures, thus minimizing the electrical and mechanical thermal drifts. This is achieved by using thermoelectric (Peltier) cooling/heating modules that are easy to control precisely. For CXS we utilized a microfocus X-ray source with tungsten (W) anode material. In addition the proposed system eliminates tungsten's multiple spectral lines by selecting monochromator crystal size appropriately therefore eliminating need for the costly mismatched, two-crystal monochromator. The system imaging was fine-tuned for tungsten Kα{sub 1} line with the energy of 59.3 keV since it has been shown to be of great clinical significance by a number of researchers at synchrotron facilities. In this way a laboratory system that can be used for evaluating and quantifying tissue properties, initially explored at synchrotron facilities, would be of great interest to a larger research community. To demonstrate the imaging capability of our instrument we use a chicken thigh tissue sample.

  15. Visualization and Analysis in Support of Fusion Science

    SciTech Connect (OSTI)

    Sanderson, Allen R.

    2012-10-01

    This report summarizes the results of the award for “Visualization and Analysis in Support of Fusion Science.” With this award our main efforts have been to develop and deploy visualization and analysis tools in three areas 1) magnetic field line analysis 2) query based visualization and 3) comparative visualization.

  16. System and method for floating-substrate passive voltage contrast

    DOE Patents [OSTI]

    Jenkins, Mark W.; Cole, Jr., Edward I.; Tangyunyong, Paiboon; Soden, Jerry M.; Walraven, Jeremy A.; Pimentel, Alejandro A.

    2009-04-28

    A passive voltage contrast (PVC) system and method are disclosed for analyzing ICs to locate defects and failure mechanisms. During analysis a device side of a semiconductor die containing the IC is maintained in an electrically-floating condition without any ground electrical connection while a charged particle beam is scanned over the device side. Secondary particle emission from the device side of the IC is detected to form an image of device features, including electrical vias connected to transistor gates or to other structures in the IC. A difference in image contrast allows the defects or failure mechanisms be pinpointed. Varying the scan rate can, in some instances, produce an image reversal to facilitate precisely locating the defects or failure mechanisms in the IC. The system and method are useful for failure analysis of ICs formed on substrates (e.g. bulk semiconductor substrates and SOI substrates) and other types of structures.

  17. High-contrast and fast electrochromic switching enabled by plasmonics

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Xu, Ting; Walter, Erich C.; Agrawal, Amit; Bohn, Christopher; Velmurugan, Jeyavel; Zhu, Wenqi; Lezec, Henri J.; Talin, A. Alec

    2016-01-27

    With vibrant colours and simple, room-temperature processing methods, electrochromic polymers have attracted attention as active materials for flexible, low-power-consuming devices. However, slow switching speeds in devices realized to date, as well as the complexity of having to combine several distinct polymers to achieve a full-colour gamut, have limited electrochromic materials to niche applications. Here we achieve fast, high-contrast electrochromic switching by significantly enhancing the interaction of light—propagating as deep-subwavelength-confined surface plasmon polaritons through arrays of metallic nanoslits, with an electrochromic polymer—present as an ultra-thin coating on the slit sidewalls. The switchable configuration retains the short temporal charge-diffusion characteristics of thinmore » electrochromic films, while maintaining the high optical contrast associated with thicker electrochromic coatings. In conclusion, we further demonstrate that by controlling the pitch of the nanoslit arrays, it is possible to achieve a full-colour response with high contrast and fast switching speeds, while relying on just one electrochromic polymer.« less

  18. Framework for an Information Visualization System

    Energy Science and Technology Software Center (OSTI)

    2006-08-11

    The Program is a suite of Windows-based software applications and services for ingesting, storing, and analyzing large quantities of disparate inforamtion. The software supports the ingestion and storage of any information that can be represented in eXtensible Markup Language (XML) format. Stored information can be subsequently retrieved via search operations, then "visualized" in multiple ways using a client application that supports a variety of analytical functions. Visualization capabilities include tools for depicting a variety ofmore » relationships that may be present in the information, including geospatial, temporal, topical, categorical, and network relationships.« less

  19. Visual Matrix Clustering of Social Networks

    SciTech Connect (OSTI)

    Wong, Pak C.; Mackey, Patrick S.; Foote, Harlan P.; May, Richard A.

    2013-07-01

    The prevailing choices to graphically represent a social network in todays literature are a node-link graph layout and an adjacency matrix. Both visualization techniques have unique strengths and weaknesses when applied to different domain applications. In this article, we focus our discussion on adjacency matrix and how to turn the matrix-based visualization technique from merely showing pairwise associations among network actors (or graph nodes) to depicting clusters of a social network. We also use node-link layouts to supplement the discussion.

  20. A Visualization Tool for Meteorological Data

    Energy Science and Technology Software Center (OSTI)

    1999-09-28

    Graphical user interfaces (GUIs) have been buit to visualize surface and upper-meteorology data for any global location and time of interest. The user selects a domain (geographic location and bounding range) and time of interest using the Gui, and a file containing coded observations is accessed and decoded. two styles of the GUI have been built, depending on whether surface or upper air visualization is desired. The former indicates weather conditions near the earth''s surface,more » while the latter illustrates a vertical profile of atmospheric conditions.« less

  1. Navigating nuclear science: Enhancing analysis through visualization

    SciTech Connect (OSTI)

    Irwin, N.H.; Berkel, J. van; Johnson, D.K.; Wylie, B.N.

    1997-09-01

    Data visualization is an emerging technology with high potential for addressing the information overload problem. This project extends the data visualization work of the Navigating Science project by coupling it with more traditional information retrieval methods. A citation-derived landscape was augmented with documents using a text-based similarity measure to show viability of extension into datasets where citation lists do not exist. Landscapes, showing hills where clusters of similar documents occur, can be navigated, manipulated and queried in this environment. The capabilities of this tool provide users with an intuitive explore-by-navigation method not currently available in today`s retrieval systems.

  2. 3D Imaging of Microbial Biofilms: Integration of Synchrotron Imaging and an Interactive Visualization Interface

    SciTech Connect (OSTI)

    Thomas, Mathew; Marshall, Matthew J.; Miller, Erin A.; Kuprat, Andrew P.; Kleese van Dam, Kerstin; Carson, James P.

    2014-08-26

    Understanding the interactions of structured communities known as “biofilms” and other complex matrixes is possible through the X-ray micro tomography imaging of the biofilms. Feature detection and image processing for this type of data focuses on efficiently identifying and segmenting biofilms and bacteria in the datasets. The datasets are very large and often require manual interventions due to low contrast between objects and high noise levels. Thus new software is required for the effectual interpretation and analysis of the data. This work specifies the evolution and application of the ability to analyze and visualize high resolution X-ray micro tomography datasets.

  3. Final Report. Institute for Ultralscale Visualization

    SciTech Connect (OSTI)

    Ma, Kwan-Liu; Galli, Giulia; Gygi, Francois; Max, Nelson; Owens, John; Pickett, Warren; Huang, Jian; Humphreys, Gregory; Moreland, Kenneth; Ross, Rob; Shen, Han-Wei; Silver, Deborah

    2015-03-01

    The SciDAC Institute for Ultrascale Visualization brought together leading experts from visualization, high-performance computing, and science application areas to make advanced visualization solutions for SciDAC scientists and the broader community. Over the five-year project, the Institute introduced many new enabling visualization techniques, which have significantly enhanced scientists’ ability to validate their simulations, interpret their data, and communicate with others about their work and findings. This Institute project involved a large number of junior and student researchers, who received the opportunities to work on some of the most challenging science applications and gain access to the most powerful high-performance computing facilities in the world. They were readily trained and prepared for facing the greater challenges presented by extreme-scale computing. The Institute’s outreach efforts, through publications, workshops and tutorials, successfully disseminated the new knowledge and technologies to the SciDAC and the broader scientific communities. The scientific findings and experience of the Institute team helped plan the SciDAC3 program.

  4. Automatic visual inspection of hybrid microcircuits

    SciTech Connect (OSTI)

    Hines, R.E.

    1980-05-01

    An automatic visual inspection system using a minicomputer and a video digitizer was developed for inspecting hybrid microcircuits (HMC) and thin-film networks (TFN). The system performed well in detecting missing components on HMCs and reduced the testing time for each HMC by 75%.

  5. Monitoring external beam radiotherapy using real-time beam visualization

    SciTech Connect (OSTI)

    Jenkins, Cesare H.; Naczynski, Dominik J.; Yu, Shu-Jung S.; Xing, Lei

    2015-01-15

    Purpose: To characterize the performance of a novel radiation therapy monitoring technique that utilizes a flexible scintillating film, common optical detectors, and image processing algorithms for real-time beam visualization (RT-BV). Methods: Scintillating films were formed by mixing Gd{sub 2}O{sub 2}S:Tb (GOS) with silicone and casting the mixture at room temperature. The films were placed in the path of therapeutic beams generated by medical linear accelerators (LINAC). The emitted light was subsequently captured using a CMOS digital camera. Image processing algorithms were used to extract the intensity, shape, and location of the radiation field at various beam energies, dose rates, and collimator locations. The measurement results were compared with known collimator settings to validate the performance of the imaging system. Results: The RT-BV system achieved a sufficient contrast-to-noise ratio to enable real-time monitoring of the LINAC beam at 20 fps with normal ambient lighting in the LINAC room. The RT-BV system successfully identified collimator movements with sub-millimeter resolution. Conclusions: The RT-BV system is capable of localizing radiation therapy beams with sub-millimeter precision and tracking beam movement at video-rate exposure.

  6. Cumulative phase delay imaging - A new contrast enhanced ultrasound modality

    SciTech Connect (OSTI)

    Demi, Libertario Sloun, Ruud J. G. van; Mischi, Massimo; Wijkstra, Hessel

    2015-10-28

    Recently, a new acoustic marker for ultrasound contrast agents (UCAs) has been introduced. A cumulative phase delay (CPD) between the second harmonic and fundamental pressure wave field components is in fact observable for ultrasound propagating through UCAs. This phenomenon is absent in the case of tissue nonlinearity and is dependent on insonating pressure and frequency, UCA concentration, and propagation path length through UCAs. In this paper, ultrasound images based on this marker are presented. The ULA-OP research platform, in combination with a LA332 linear array probe (Esaote, Firenze Italy), were used to image a gelatin phantom containing a PVC plate (used as a reflector) and a cylindrical cavity measuring 7 mm in diameter (placed in between the observation point and the PVC plate). The cavity contained a 240 µL/L SonoVueO{sup ®} UCA concentration. Two insonating frequencies (3 MHz and 2.5 MHz) were used to scan the gelatine phantom. A mechanical index MI = 0.07, measured in water at the cavity location with a HGL-0400 hydrophone (Onda, Sunnyvale, CA), was utilized. Processing the ultrasound signals backscattered from the plate, ultrasound images were generated in a tomographic fashion using the filtered back-projection method. As already observed in previous studies, significantly higher CPD values are measured when imaging at a frequency of 2.5 MHz, as compared to imaging at 3 MHz. In conclusion, these results confirm the applicability of the discussed CPD as a marker for contrast imaging. Comparison with standard contrast-enhanced ultrasound imaging modalities will be the focus of future work.

  7. Fourier-transform and global contrast interferometer alignment methods

    DOE Patents [OSTI]

    Goldberg, Kenneth A.

    2001-01-01

    Interferometric methods are presented to facilitate alignment of image-plane components within an interferometer and for the magnified viewing of interferometer masks in situ. Fourier-transforms are performed on intensity patterns that are detected with the interferometer and are used to calculate pseudo-images of the electric field in the image plane of the test optic where the critical alignment of various components is being performed. Fine alignment is aided by the introduction and optimization of a global contrast parameter that is easily calculated from the Fourier-transform.

  8. Phase contrast and operation regimes in multifrequency atomic force microscopy

    SciTech Connect (OSTI)

    Santos, Sergio

    2014-04-07

    In amplitude modulation atomic force microscopy the attractive and the repulsive force regimes induce phase shifts above and below 90°, respectively. In the more recent multifrequency approach, however, multiple operation regimes have been reported and the theory should be revisited. Here, a theory of phase contrast in multifrequency atomic force microscopy is developed and discussed in terms of energy transfer between modes, energy dissipation and the kinetic energy and energy transfer associated with externally driven harmonics. The single frequency virial that controls the phase shift might undergo transitions in sign while the average force (modal virial) remains positive (negative)

  9. SciDAC Institute for Ultra-Scale Visualization: Activity Recognition for Ultra-Scale Visualization

    SciTech Connect (OSTI)

    Silver, Deborah

    2014-04-30

    Understanding the science behind ultra-scale simulations requires extracting meaning from data sets of hundreds of terabytes or more. Developing scalable parallel visualization algorithms is a key step enabling scientists to interact and visualize their data at this scale. However, at extreme scales, the datasets are so huge, there is not even enough time to view the data, let alone explore it with basic visualization methods. Automated tools are necessary for knowledge discovery -- to help sift through the information and isolate characteristic patterns, thereby enabling the scientist to study local interactions, the origin of features and their evolution in large volumes of data. These tools must be able to operate on data of this scale and work with the visualization process. In this project, we developed a framework for activity detection to allow scientists to model and extract spatio-temporal patterns from time-varying data.

  10. Wind Energy Technology Trends: Comparing and Contrasting Recent Cost and Performance Forecasts (Poster)

    SciTech Connect (OSTI)

    Lantz, E.; Hand, M.

    2010-05-01

    Poster depicts wind energy technology trends, comparing and contrasting recent cost and performance forecasts.

  11. File:DIA Visual Development.pdf | Open Energy Information

    Open Energy Info (EERE)

    DIA Visual Development.pdf Jump to: navigation, search File File history File usage File:DIA Visual Development.pdf Size of this preview: 800 600 pixels. Go to page 1 2 3 4 5 6...

  12. Visualization and Analysis of 3D Gene Expression Data (Technical...

    Office of Scientific and Technical Information (OSTI)

    Technical Report: Visualization and Analysis of 3D Gene Expression Data Citation Details In-Document Search Title: Visualization and Analysis of 3D Gene Expression Data You are...

  13. 3D Visualization of Water Transport in Ferns

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    3D Visualization of Water Transport in Ferns 3D Visualization of Water Transport in Ferns Print Monday, 08 April 2013 00:00 Plants transport water through elongated cells called...

  14. OSTIblog Articles in the visualizations Topic | OSTI, US Dept...

    Office of Scientific and Technical Information (OSTI)

    The Jordan Aha Test for Visualizations by Sharon Jordan 24 Mar, 2010 in Technology 1567 Bucky20Ball.png The Jordan Aha Test for Visualizations Read more about 1567 It is said ...

  15. Visualizing OpenEI Data | OpenEI Community

    Open Energy Info (EERE)

    front page? There are several online tools that make organizing and visualizing data free and easy. OpenEI uses Google to visualize data in scatterplots, bar charts, and in the...

  16. Algorithms, Frameworks and Toolsets for High Performance, Remoteand Distributed Visualization

    SciTech Connect (OSTI)

    Bethel, E. Wes; Shalf, John M.

    2005-07-01

    This document is a two-page summary of research accomplishments in the LBNL Visualization program during FY2005.

  17. Prediction of the visual impact of motorways using GIS

    SciTech Connect (OSTI)

    Jiang, Like; Kang, Jian; Schroth, Olaf

    2015-11-15

    Large scale transportation projects can adversely affect the visual perception of environmental quality and require adequate visual impact assessment. In this study, we investigated the effects of the characteristics of the road project and the character of the existing landscape on the perceived visual impact of motorways, and developed a GIS-based prediction model based on the findings. An online survey using computer-visualised scenes of different motorway and landscape scenarios was carried out to obtain perception-based judgements on the visual impact. Motorway scenarios simulated included the baseline scenario without road, original motorway, motorways with timber noise barriers, transparent noise barriers and tree screen; different landscape scenarios were created by changing land cover of buildings and trees in three distance zones. The landscape content of each scene was measured in GIS. The result shows that presence of a motorway especially with the timber barrier significantly decreases the visual quality of the view. The resulted visual impact tends to be lower where it is less visually pleasant with more buildings in the view, and can be slightly reduced by the visual absorption effect of the scattered trees between the motorway and the viewpoint. Based on the survey result, eleven predictors were identified for the visual impact prediction model which was applied in GIS to generate maps of visual impact of motorways in different scenarios. The proposed prediction model can be used to achieve efficient and reliable assessment of visual impact of motorways. - Highlights: • Motorways induce significant visual impact especially with timber noise barriers. • Visual impact is negatively correlated with amount of buildings in the view. • Visual impact is positively correlated with percentage of trees in the view. • Perception-based motorway visual impact prediction model using mapped predictors • Predicted visual impacts in different scenarios are

  18. 7 Key Challenges for Visualization in Cyber Network Defense

    SciTech Connect (OSTI)

    Best, Daniel M.; Endert, Alexander; Kidwell, Dan

    2014-12-02

    In this paper we present seven challenges, informed by two user studies, to be considered when developing a visualization for cyber security purposes. Cyber security visualizations must go beyond isolated solutions and pretty picture visualizations in order to make impact to users. We provide an example prototype that addresses the challenges with a description of how they are met. Our aim is to assist in increasing utility and adoption rates for visualization capabilities in cyber security.

  19. Structural Monitoring System (SMS) and Visual System (VS) | Department of

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Energy Structural Monitoring System (SMS) and Visual System (VS) Structural Monitoring System (SMS) and Visual System (VS) Axis Communications, Inc. has developed network ready, environmentally tolerant, low-light level camera-visual systems (VS) with built-in pan and tilt mechanisms that permit remote monitoring of facilities that are in standby mode. Structural Monitoring System (SMS) and Visual System (VS) (188.51 KB) More Documents & Publications GammaCam Technology Demonstration at

  20. Visualization of United States Renewable Consumption | Open Energy...

    Open Energy Info (EERE)

    Visualization of United States Renewable Consumption AgencyCompany Organization: Energy Information Administration Sector: Energy Resource Type: Softwaremodeling tools User...

  1. Topological Cacti: Visualizing Contour-based Statistics

    SciTech Connect (OSTI)

    Weber, Gunther H.; Bremer, Peer-Timo; Pascucci, Valerio

    2011-05-26

    Contours, the connected components of level sets, play an important role in understanding the global structure of a scalar field. In particular their nestingbehavior and topology-often represented in form of a contour tree-have been used extensively for visualization and analysis. However, traditional contour trees onlyencode structural properties like number of contours or the nesting of contours, but little quantitative information such as volume or other statistics. Here we use thesegmentation implied by a contour tree to compute a large number of per-contour (interval) based statistics of both the function defining the contour tree as well asother co-located functions. We introduce a new visual metaphor for contour trees, called topological cacti, that extends the traditional toporrery display of acontour tree to display additional quantitative information as width of the cactus trunk and length of its spikes. We apply the new technique to scalar fields ofvarying dimension and different measures to demonstrate the effectiveness of the approach.

  2. Geographic Visualization of Power-Grid Dynamics

    Energy Science and Technology Software Center (OSTI)

    2015-06-18

    The visualization enables the simulation analyst to see changes in the frequency through time and space. With this technology, the analyst has a bird's eye view of the frequency at loads and generators as the simulated power system responds to the loss of a generator, spikes in load, and other contingencies. The significance of a contingency to the operation of an electrical power system depends critically on how the resulting tansients evolve in time andmore » space. Consequently, these dynamic events can only be understood when seen in their proper geographic context. this understanding is indispensable to engineers working on the next generation of distributed sensing and control systems for the smart grid. By making possible a natural and intuitive presentation of dynamic behavior, our new visualization technology is a situational-awareness tool for power-system engineers.« less

  3. Geographic Visualization of Power-Grid Dynamics

    SciTech Connect (OSTI)

    Sukumar, Sreenivas R.

    2015-06-18

    The visualization enables the simulation analyst to see changes in the frequency through time and space. With this technology, the analyst has a bird's eye view of the frequency at loads and generators as the simulated power system responds to the loss of a generator, spikes in load, and other contingencies. The significance of a contingency to the operation of an electrical power system depends critically on how the resulting tansients evolve in time and space. Consequently, these dynamic events can only be understood when seen in their proper geographic context. this understanding is indispensable to engineers working on the next generation of distributed sensing and control systems for the smart grid. By making possible a natural and intuitive presentation of dynamic behavior, our new visualization technology is a situational-awareness tool for power-system engineers.

  4. APPLYING SIMPLE TECHNOLOGY ACCOMPLISHES VISUAL INSPECTION CHALLENGES

    SciTech Connect (OSTI)

    Robinson, C

    2007-07-21

    This paper discusses the successful implementation of simple video technologies at the Savannah River Site (SRS) to perform complex visual inspection, monitoring, and surveillance tasks. Because SRS facilities are similar to those of an industrial plant, the environmental and accessibility considerations for remote viewing are the primary determining factors in the selection of technology. The constraints and challenges associated with remote viewing are discussed, and examples of applications are given.

  5. Introduction to Reading and Visualizing ARM Data

    SciTech Connect (OSTI)

    Mather, James

    2014-02-18

    Atmospheric Radiation Measurement (ARM) Program standard data format is NetCDF 3 (Network Common Data Form). The object of this tutorial is to provide a basic introduction to NetCDF with an emphasis on aspects of the ARM application of NetCDF. The goal is to provide basic instructions for reading and visualizing ARM NetCDF data with the expectation that these examples can then be applied to more complex applications.

  6. Ultrascale visualization capabilities for the ParaView/VTK framework

    Energy Science and Technology Software Center (OSTI)

    2009-06-09

    The software is a set of technologies developed by the SciDAC Institute for Ultrascale Visualization in order to address the visualization needs for petascale computing and beyond. These technologies include improved I/O performance, simulation co-processing, advanced rendering capabilities, and specialized visualization techniques developed for SciDAC applications.

  7. Multidimensional structured data visualization method and apparatus, text visualization method and apparatus, method and apparatus for visualizing and graphically navigating the world wide web, method and apparatus for visualizing hierarchies

    DOE Patents [OSTI]

    Risch, John S.; Dowson, Scott T.

    2012-03-06

    A method of displaying correlations among information objects includes receiving a query against a database; obtaining a query result set; and generating a visualization representing the components of the result set, the visualization including one of a plane and line to represent a data field, nodes representing data values, and links showing correlations among fields and values. Other visualization methods and apparatus are disclosed.

  8. Multidimensional structured data visualization method and apparatus, text visualization method and apparatus, method and apparatus for visualizing and graphically navigating the world wide web, method and apparatus for visualizing hierarchies

    DOE Patents [OSTI]

    Risch, John S.; Dowson, Scott T.; Hart, Michelle L.; Hatley, Wes L.

    2008-05-13

    A method of displaying correlations among information objects comprises receiving a query against a database; obtaining a query result set; and generating a visualization representing the components of the result set, the visualization including one of a plane and line to represent a data field, nodes representing data values, and links showing correlations among fields and values. Other visualization methods and apparatus are disclosed.

  9. Multivariate volume visualization through dynamic projections

    SciTech Connect (OSTI)

    Liu, Shusen; Wang, Bei; Thiagarajan, Jayaraman J.; Bremer, Peer -Timo; Pascucci, Valerio

    2014-11-01

    We propose a multivariate volume visualization framework that tightly couples dynamic projections with a high-dimensional transfer function design for interactive volume visualization. We assume that the complex, high-dimensional data in the attribute space can be well-represented through a collection of low-dimensional linear subspaces, and embed the data points in a variety of 2D views created as projections onto these subspaces. Through dynamic projections, we present animated transitions between different views to help the user navigate and explore the attribute space for effective transfer function design. Our framework not only provides a more intuitive understanding of the attribute space but also allows the design of the transfer function under multiple dynamic views, which is more flexible than being restricted to a single static view of the data. For large volumetric datasets, we maintain interactivity during the transfer function design via intelligent sampling and scalable clustering. As a result, using examples in combustion and climate simulations, we demonstrate how our framework can be used to visualize interesting structures in the volumetric space.

  10. Dependency visualization for complex system understanding

    SciTech Connect (OSTI)

    Smart, J.A.C.

    1994-09-01

    With the volume of software in production use dramatically increasing, the importance of software maintenance has become strikingly apparent. Techniques now sought and developed for reverse engineering and design extraction and recovery. At present, numerous commercial products and research tools exist which are capable of visualizing a variety of programming languages and software constructs. The list of new tools and services continues to grow rapidly. Although the scope of the existing commercial and academic product set is quite broad, these tools still share a common underlying problem. The ability of each tool to visually organize object representations is increasingly impaired as the number of components and component dependencies within systems increases. Regardless of how objects are defined, complex ``spaghetti`` networks result in nearly all large system cases. While this problem is immediately apparent in modem systems analysis involving large software implementations, it is not new. As will be discussed in Chapter 2, related problems involving the theory of graphs were identified long ago. This important theoretical foundation provides a useful vehicle for representing and analyzing complex system structures. While the utility of directed graph based concepts in software tool design has been demonstrated in literature, these tools still lack the capabilities necessary for large system comprehension. This foundation must therefore be expanded with new orgnizational and visualization constructs necessary to meet this challenge. This dissertation addresses this need by constructing a conceptual model and a set of methods for interactively exploring, organizing, and understanding the structure of complex software systems.

  11. Radial velocities of southern visual multiple stars

    SciTech Connect (OSTI)

    Tokovinin, Andrei; Pribulla, Theodor; Fischer, Debra E-mail: pribulla@ta3.sk

    2015-01-01

    High-resolution spectra of visual multiple stars were taken in 20082009 to detect or confirm spectroscopic subsystems and to determine their orbits. Radial velocities of 93 late-type stars belonging to visual multiple systems were measured by numerical cross-correlation. We provide the individual velocities, the width, and the amplitude of the Gaussians that approximate the correlations. The new information on the multiple systems resulting from these data is discussed. We discovered double-lined binaries in HD 41742B, HD 56593C, and HD 122613AB, confirmed several other known subsystems, and constrained the existence of subsystems in some visual binaries where both components turned out to have similar velocities. The orbits of double-lined subsystems with periods of 148 and 13 days are computed for HD 104471 Aa,Ab and HD 210349 Aa,Ab, respectively. We estimate individual magnitudes and masses of the components in these triple systems and update the outer orbit of HD 104471 AB.

  12. Contrast enhancing solution for use in confocal microscopy

    DOE Patents [OSTI]

    Tannous, Zeina; Torres, Abel; Gonzalez, Salvador

    2006-10-31

    A method of optically detecting a tumor during surgery. The method includes imaging at least one test point defined on the tumor using a first optical imaging system to provide a first tumor image. The method further includes excising a first predetermined layer of the tumor for forming an in-vivo defect area. A predetermined contrast enhancing solution is disposed on the in-vivo defect area, which is adapted to interact with at least one cell anomaly, such as basal cell carcinoma, located on the in-vivo defect area for optically enhancing the cell anomaly. Thereafter the defect area can be optically imaged to provide a clear and bright representation of the cell anomaly to aid a surgeon while surgically removing the cell anomaly.

  13. Visual probes and methods for placing visual probes into subsurface areas

    DOE Patents [OSTI]

    Clark, Don T.; Erickson, Eugene E.; Casper, William L.; Everett, David M.

    2004-11-23

    Visual probes and methods for placing visual probes into subsurface areas in either contaminated or non-contaminated sites are described. In one implementation, the method includes driving at least a portion of a visual probe into the ground using direct push, sonic drilling, or a combination of direct push and sonic drilling. Such is accomplished without providing an open pathway for contaminants or fugitive gases to reach the surface. According to one implementation, the invention includes an entry segment configured for insertion into the ground or through difficult materials (e.g., concrete, steel, asphalt, metals, or items associated with waste), at least one extension segment configured to selectively couple with the entry segment, at least one push rod, and a pressure cap. Additional implementations are contemplated.

  14. OSTIblog Articles in the visualizations Topic | OSTI, US Dept of Energy

    Office of Scientific and Technical Information (OSTI)

    Office of Scientific and Technical Information visualizations Topic

  15. Visual examinations of K east fuel elements

    SciTech Connect (OSTI)

    Pitner, A.L., Fluor Daniel Hanford

    1997-02-03

    Selected fuel elements stored in both ``good fuel`` and ``bad fuel`` canisters in K East Basin were extracted and visually examined full length for damage. Lower end damage in the ``bad fuel`` canisters was found to be more severe than expected based on top end appearances. Lower end damage for the ``good fuel`` canisters, however, was less than expected based on top end observations. Since about half of the fuel in K East Basin is contained in ``good fuel`` canisters based on top end assessments, the fraction of fuel projected to be intact with respect to IPS processing considerations remains at 50% based on these examination results.

  16. Visualizing Brain Metals in Health and Disease

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualizing Brain Metals in Health and Disease figure 1 Fig. 1. Rapid-scanning x-ray fluorescence mapping ex perimental setup. Synchrotron x-rays at 11 keV passed through a 50 µm aperture (Ap). The beam intensity was monitored with a N2-filled ion chamber (I0). The brain slice was mounted vertically on a motorized stage (St) at 45° to the incident x-ray beam and raster scanned in the beam. A 13-element Ge detector (Ge) was positioned at a 90° angle to the beam. We all require iron, copper and

  17. Visualization of information with an established order

    DOE Patents [OSTI]

    Wong, Pak Chung; Foote, Harlan P.; Thomas, James J.; Wong, Kwong-Kwok

    2007-02-13

    Among the embodiments of the present invention is a system including one or more processors operable to access data representative of a biopolymer sequence of monomer units. The one or more processors are further operable to establish a pattern corresponding to at least one fractal curve and generate one or more output signals corresponding to a number of image elements each representative of one of the monomer units. Also included is a display device responsive to the one or more output signals to visualize the biopolymer sequence by displaying the image elements in accordance with the pattern.

  18. Sequential pattern data mining and visualization

    DOE Patents [OSTI]

    Wong, Pak Chung (Richland, WA); Jurrus, Elizabeth R. (Kennewick, WA); Cowley, Wendy E. (Benton City, WA); Foote, Harlan P. (Richland, WA); Thomas, James J. (Richland, WA)

    2011-12-06

    One or more processors (22) are operated to extract a number of different event identifiers therefrom. These processors (22) are further operable to determine a number a display locations each representative of one of the different identifiers and a corresponding time. The display locations are grouped into sets each corresponding to a different one of several event sequences (330a, 330b, 330c. 330d, 330e). An output is generated corresponding to a visualization (320) of the event sequences (330a, 330b, 330c, 330d, 330e).

  19. Sequential pattern data mining and visualization

    DOE Patents [OSTI]

    Wong, Pak Chung (Richland, WA); Jurrus, Elizabeth R. (Kennewick, WA); Cowley, Wendy E. (Benton City, WA); Foote, Harlan P. (Richland, WA); Thomas, James J. (Richland, WA)

    2009-05-26

    One or more processors (22) are operated to extract a number of different event identifiers therefrom. These processors (22) are further operable to determine a number a display locations each representative of one of the different identifiers and a corresponding time. The display locations are grouped into sets each corresponding to a different one of several event sequences (330a, 330b, 330c. 330d, 330e). An output is generated corresponding to a visualization (320) of the event sequences (330a, 330b, 330c, 330d, 330e).

  20. Hydraulic flow visualization method and apparatus

    DOE Patents [OSTI]

    Karidis, P.G.

    1984-01-01

    An apparatus and method for visualizing liquid flow. Pulses of gas bubbles are introduced into a liquid flow stream and a strobe light is operated at a frequency related to the frequency of the gas pulses to shine on the bubbles as they pass through the liquid stream. The gas pulses pass through a probe body having a valve element, and a reciprocating valve stem passes through the probe body to operate the valve element. A stem actuating device comprises a slidable reciprocating member, operated by a crank arm. The actuated member is adjustable to adjust the amount of the valve opening during each pulse.

  1. Contrasting Behavior of GaP(001) and InP(001) at the Interface...

    Office of Scientific and Technical Information (OSTI)

    Contrasting Behavior of GaP(001) and InP(001) at the Interface with Water Citation Details In-Document Search Title: Contrasting Behavior of GaP(001) and InP(001) at the Interface ...

  2. Visual Analytics for Power Grid Contingency Analysis

    SciTech Connect (OSTI)

    Wong, Pak C.; Huang, Zhenyu; Chen, Yousu; Mackey, Patrick S.; Jin, Shuangshuang

    2014-01-20

    Contingency analysis is the process of employing different measures to model scenarios, analyze them, and then derive the best response to remove the threats. This application paper focuses on a class of contingency analysis problems found in the power grid management system. A power grid is a geographically distributed interconnected transmission network that transmits and delivers electricity from generators to end users. The power grid contingency analysis problem is increasingly important because of both the growing size of the underlying raw data that need to be analyzed and the urgency to deliver working solutions in an aggressive timeframe. Failure to do so may bring significant financial, economic, and security impacts to all parties involved and the society at large. The paper presents a scalable visual analytics pipeline that transforms about 100 million contingency scenarios to a manageable size and form for grid operators to examine different scenarios and come up with preventive or mitigation strategies to address the problems in a predictive and timely manner. Great attention is given to the computational scalability, information scalability, visual scalability, and display scalability issues surrounding the data analytics pipeline. Most of the large-scale computation requirements of our work are conducted on a Cray XMT multi-threaded parallel computer. The paper demonstrates a number of examples using western North American power grid models and data.

  3. From Question Answering to Visual Exploration

    SciTech Connect (OSTI)

    McColgin, Dave W.; Gregory, Michelle L.; Hetzler, Elizabeth G.; Turner, Alan E.

    2006-08-11

    Research in Question Answering has focused on the quality of information retrieval or extraction using the metrics of precision and recall to judge success; these metrics drive toward finding the specific best answer(s) and are best supportive of a lookup type of search. These do not address the opportunity that users? natural language questions present for exploratory interactions. In this paper, we present an integrated Question Answering environment that combines a visual analytics tool for unstructured text and a state-of-the-art query expansion tool designed to compliment the cognitive processes associated with an information analysts work flow. Analysts are seldom looking for factoid answers to simple questions; their information needs are much more complex in that they may be interested in patterns of answers over time, conflicting information, and even related non-answer data may be critical to learning about a problem or reaching prudent conclusions. In our visual analytics tool, questions result in a comprehensive answer space that allows users to explore the variety within the answers and spot related information in the rest of the data. The exploratory nature of the dialog between the user and this system requires tailored evaluation methods that better address the evolving user goals and counter cognitive biases inherent to exploratory search tasks.

  4. SU-D-12A-02: DeTECT, a Method to Enhance Soft Tissue Contrast From Mega Voltage CT

    SciTech Connect (OSTI)

    Sheng, K; Gou, S; Qi, S

    2014-06-01

    Purpose: MVCT images have been used on TomoTherapy system to align patients based on bony anatomies but its usefulness for soft tissue registration, delineation and adaptive radiation therapy is severely limited due to minimal photoelectric interaction and prominent presence of noise resulting from low detector quantum efficiency of megavoltage x-rays. We aim to utilize a non-local means denoising method and texture analysis to recover the soft tissue information for MVCT. Methods: A block matching 3D (BM3D) algorithm was adapted to reduce the noise while keeping the texture information of the MVCT images. BM3D is an imaging denoising algorithm developed from non-local means methods. BM3D additionally creates 3D groups by stacking 2D patches by the order of similarity. 3D denoising operation is then performed. The resultant 3D group is inversely transformed back to 2D images. In this study, BM3D was applied to MVCT images of a CT quality phantom, a head and neck and a prostate patient. Following denoising, imaging texture was enhanced to create the denoised and texture enhanced CT (DeTECT). Results: The original MVCT images show prevalent noise and poor soft tissue contrast. By applying BM3D denoising and texture enhancement, all MVCT images show remarkable improvements. For the phantom, the contrast to noise ratio for the low contrast plug was improved from 2.2 to 13.1 without compromising line pair conspicuity. For the head and neck patient, the lymph nodes and vein in the carotid space inconspicuous in the original MVCT image becomes highly visible in DeTECT. For the prostate patient, the boundary between the bladder and the prostate in the original MVCT is successfully recovered. Both results are visually validated by kVCT images of the corresponding patients. Conclusion: DeTECT showed the promise to drastically improve the soft tissue contrast of MVCT for image guided radiotherapy and adaptive radiotherapy.

  5. Web-based Visual Analytics for Extreme Scale Climate Science

    SciTech Connect (OSTI)

    Steed, Chad A; Evans, Katherine J; Harney, John F; Jewell, Brian C; Shipman, Galen M; Smith, Brian E; Thornton, Peter E; Williams, Dean N.

    2014-01-01

    In this paper, we introduce a Web-based visual analytics framework for democratizing advanced visualization and analysis capabilities pertinent to large-scale earth system simulations. We address significant limitations of present climate data analysis tools such as tightly coupled dependencies, ineffi- cient data movements, complex user interfaces, and static visualizations. Our Web-based visual analytics framework removes critical barriers to the widespread accessibility and adoption of advanced scientific techniques. Using distributed connections to back-end diagnostics, we minimize data movements and leverage HPC platforms. We also mitigate system dependency issues by employing a RESTful interface. Our framework embraces the visual analytics paradigm via new visual navigation techniques for hierarchical parameter spaces, multi-scale representations, and interactive spatio-temporal data mining methods that retain details. Although generalizable to other science domains, the current work focuses on improving exploratory analysis of large-scale Community Land Model (CLM) and Community Atmosphere Model (CAM) simulations.

  6. Manipulating and Visualizing Proteins (Technical Report) | SciTech Connect

    Office of Scientific and Technical Information (OSTI)

    Technical Report: Manipulating and Visualizing Proteins Citation Details In-Document Search Title: Manipulating and Visualizing Proteins ProteinShop Gives Researchers a Hands-On Tool for Manipulating, Visualizing Protein Structures. The Human Genome Project and other biological research efforts are creating an avalanche of new data about the chemical makeup and genetic codes of living organisms. But in order to make sense of this raw data, researchers need software tools which let them explore

  7. High-Performance Computing and Visualization | Energy Systems Integration |

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NREL High-Performance Computing and Visualization High-performance computing (HPC) and visualization at NREL propel technology innovation as a research tool by which scientists and engineers find new ways to tackle our nation's energy challenges-challenges that cannot be addressed through traditional experimentation alone. Photo of two men standing in front of a 3D visualization screen These research efforts will save time and money and significantly improve the likelihood of breakthroughs

  8. Visualization of Fuel Cell Water Transport and Performance Characterization

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    under Freezing Conditions | Department of Energy Visualization of Fuel Cell Water Transport and Performance Characterization under Freezing Conditions Visualization of Fuel Cell Water Transport and Performance Characterization under Freezing Conditions Part of a $100 million fuel cell award announced by DOE Secretary Bodman on Oct. 25, 2006. 2_rit.pdf (20.71 KB) More Documents & Publications Visualization of Fuel Cell Water Transport and Characterization under Freezing Conditions

  9. Visualization of World Energy Supply | Open Energy Information

    Open Energy Info (EERE)

    isualizationofWorldEnergySupply Cost: Free OpenEI Keyword(s): Community Generated Language: English References: OECD1 Motion chart visualization of the world energy supply...

  10. Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture...

    Office of Scientific and Technical Information (OSTI)

    use computer visualizations to accelerate climate research and discuss the development of next-generation clean energy technologies such as wind turbines and solar cells. ...

  11. Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture...

    Office of Scientific and Technical Information (OSTI)

    The final Carbon Smackdown match took place Aug. 9, 2010. Juan Meza of the Computational Research Division revealed how scientists use computer visualizations to accelerate climate ...

  12. Ocean Thermal Extractable Energy Visualization: Final Technical Report

    Office of Energy Efficiency and Renewable Energy (EERE)

    Report about the Ocean Thermal Extractable Energy Visualization project, which focuses on assessing the Maximum Practicably Extractable Energy from the world’s ocean thermal resources.

  13. VISMASHUP: streamlining the creation of custom visualization applications

    SciTech Connect (OSTI)

    Ahrens, James P; Santos, Emanuele; Lins, Lauro; Freire, Juliana; Silva, Cl'audio T

    2010-01-01

    Visualization is essential for understanding the increasing volumes of digital data. However, the process required to create insightful visualizations is involved and time consuming. Although several visualization tools are available, including tools with sophisticated visual interfaces, they are out of reach for users who have little or no knowledge of visualization techniques and/or who do not have programming expertise. In this paper, we propose VISMASHUP, a new framework for streamlining the creation of customized visualization applications. Because these applications can be customized for very specific tasks, they can hide much of the complexity in a visualization specification and make it easier for users to explore visualizations by manipulating a small set of parameters. We describe the framework and how it supports the various tasks a designer needs to carry out to develop an application, from mining and exploring a set of visualization specifications (pipelines), to the creation of simplified views of the pipelines, and the automatic generation of the application and its interface. We also describe the implementation of the system and demonstrate its use in two real application scenarios.

  14. The SDAV Software Frameworks for Visualization and Analysis on...

    Office of Scientific and Technical Information (OSTI)

    Software Frameworks for Visualization and Analysis on Next-Generation Multi-Core and Many-Core Architectures. Citation Details In-Document Search Title: The SDAV Software ...

  15. Capturing and Using Knowledge about the Use of Visualization Toolkits

    SciTech Connect (OSTI)

    Del Rio, Nicholas R.; Pinheiro da Silva, Paulo

    2012-11-02

    When constructing visualization pipelines using toolkits such as Visualization Toolkit (VTK) and Generic Mapping Tools (GMT), developers must understand (1) what toolkit operators will transform their data from its raw state to some required view state and (2) what viewers are available to present the generated view. Traditionally, developers learn about how to construct visualization pipelines by reading documentation and inspecting code examples, which can be costly in terms of the time and effort expended. Once an initial pipeline is constructed, developers may still have to undergo a trial and error process before a satisfactory visualization is generated. This paper presents the Visualization Knowledge Project (VisKo) that is built on a knowledge base of visualization toolkit operators and how they can be piped together to form visualization pipelines. Developers may now rely on VisKo to guide them when constructing visualization pipelines and in some cases, when VisKo has complete knowledge about some set of operators (i.e., sequencing and parameter settings), automatically generate a fully functional visualization pipeline.

  16. Visualizing Assembling Everything (2010 JGI/ANL HPC Workshop)

    ScienceCinema (OSTI)

    Jaffe, David; Gnerre, Sante

    2011-06-08

    David Jaffe and Sante Gnerre of the Broad Institute give a presentation on "Visualizing assembling everything" at the JGI/Argonne HPC Workshop on January 25, 2010.

  17. NREL: Distributed Grid Integration - Data Collection and Visualization...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    District and the U.S. Army, to create data collection and visualization scenarios that help them to understand and effectively manage distributed energy integration systems. ...

  18. Visualization of Force Fields in Protein Structure Prediction...

    Office of Scientific and Technical Information (OSTI)

    WM KeckFoundation Country of Publication: United States Language: English Subject: 99 GENERAL AND MISCELLANEOUS molecular energy visualization protein structure prediction

  19. Introduction to Reading and Visualizing ARM Data (Technical Report...

    Office of Scientific and Technical Information (OSTI)

    Introduction to Reading and Visualizing ARM Data Citation Details In-Document Search ... Country of Publication: United States Language: English Word Cloud More Like This Full ...

  20. Visualizing the Behavior of Polar Domains and Screening Charges...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Visualizing the Behavior of Polar Domains and Screening Charges Under Electric and Mechanical Fields Event Sponsor: Mathematics and Computing Science - LANS Seminar Start Date: Sep...

  1. SBOL Visual: A Graphical Language for Genetic Designs

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Quinn, Jacqueline Y.; Cox, Robert Sidney; Adler, Aaron; Beal, Jacob; Bhatia, Swapnil; Cai, Yizhi; Chen, Joanna; Clancy, Kevin; Galdzicki, Michal; Hillson, Nathan J.; et al

    2015-12-03

    Synthetic Biology Open Language (SBOL) Visual is a graphical standard for genetic engineering. We report that it consists of symbols representing DNA subsequences, including regulatory elements and DNA assembly features. These symbols can be used to draw illustrations for communication and instruction, and as image assets for computer-aided design. SBOL Visual is a community standard, freely available for personal, academic, and commercial use (Creative Commons CC0 license). We provide prototypical symbol images that have been used in scientific publications and software tools. We encourage users to use and modify them freely, and to join the SBOL Visual community: http://www.sbolstandard.org/visual.

  2. Visualization of United States Energy Consumption | Open Energy...

    Open Energy Info (EERE)

    Energy Consumption Jump to: navigation, search Tool Summary LAUNCH TOOL Name: Visualization of United States Energy Consumption AgencyCompany Organization: Energy Information...

  3. Visualization of Electric Power System Information: Workshop Proceedings

    SciTech Connect (OSTI)

    Kroposki, B.; Komomua, C.

    2013-01-01

    This report summarizes the workshop entitled: Visualization of Electric Power System Information. The workshop was held on September 11, 2012 on NREL's campus in Golden, Colorado.

  4. A Novel Visualization Technique for Electric Power Grid Analytics

    SciTech Connect (OSTI)

    Wong, Pak C.; Schneider, Kevin P.; Mackey, Patrick S.; Foote, Harlan P.; Chin, George; Guttromson, Ross T.; Thomas, James J.

    2009-05-01

    The application of information visualization holds tremendous promise for the electric power industry, and yet its potential has not been sufficiently exploited by the visualization community. Prior work on visualizing electric power systems has been limited to depicting raw or processed information on top of a geographic layout. Little effort has been devoted to maximize the analytical strengths naturally gained by the visualization itself. This paper introduces a visualization system prototype, known as GreenGrid, that explores the planning and monitoring of the North American Electricity Infrastructure. For the purposes of visualization, the power infrastructure can be described as a network of nodes and links. The nodes represent the electrical buses where generators and loads are connected, while the links represent the transmission lines that interconnect the buses. This paper focuses mainly on a customized technique within GreenGrid that is designed to visually identify abnormal characteristics of the electricity infrastructure. In particular, we examine an extreme event that occurred within the Western United States power grid on August 10, 1996. We compare our study results with the conclusion of the post-disturbance analysis and find that many of the disturbance characteristics can be readily identified with the proper form of visualization. The paper includes a lessons learned discussion to evaluate the visualization application.

  5. Visualizing Wind Farm Wake Losses using SCADA Data

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Continuous Reliability Enhancement for Wind Visualizing Wind Farm Wake Losses using SCADA ... the Department of Energy's Continuous Reliability Enhancement for Wind (CREW) project. ...

  6. Analysis and visualization of global magnetospheric processes

    SciTech Connect (OSTI)

    Winske, D.; Mozer, F.S.; Roth, I.

    1998-12-31

    This is the final report of a three-year, Laboratory Directed Research and Development (LDRD) project at Los Alamos National Laboratory (LANL). The purpose of this project is to develop new computational and visualization tools to analyze particle dynamics in the Earth`s magnetosphere. These tools allow the construction of a global picture of particle fluxes, which requires only a small number of in situ spacecraft measurements as input parameters. The methods developed in this project have led to a better understanding of particle dynamics in the Earth`s magnetotail in the presence of turbulent wave fields. They have also been used to demonstrate how large electromagnetic pulses in the solar wind can interact with the magnetosphere to increase the population of energetic particles and even form new radiation belts.

  7. Spatio-temporal Visualization for Environmental Decision Support

    SciTech Connect (OSTI)

    Bhaduri, Budhendra L.; Shankar, Mallikarjun; Sorokine, Alexandre; Ganguly, Auroop R.

    2009-01-01

    Traditional visualization of earth surface features has been addressed through visual exploration, analysis, synthesis, and presentation of observable geospatial data. However, characterizing the changes in their observable and unobservable properties of geospatial features is critical for planning and policy formulation. Recent approaches are addressing modeling and visualization of the temporal dynamics that describe observed and/or predicted physical and socioeconomic processes using vast volumes of earth observation (imagery and other geophysical) data from remote sensor networks. This paper provides an overview of selected geospatial modeling and simulation, exploratory analysis of earth observation data, and high performance visualization research at Oak Ridge National Laboratory for developing novel data driven approaches for geospatial knowledge discovery and visualization relevant to environmental decision support.

  8. Hypervolume visualization: a challenge in simplicity

    SciTech Connect (OSTI)

    Bajaj, C.L.; Pascucci, V.; Rabbiolo, G.; Schikore, D.R.

    1998-09-22

    Hyper-volume visualization is designed to provide simple and fully explanatory images that give comprehensive insights into the global structure of scalar fields of any dimension. The basic idea is to have a dimension independent viewing system that scales nicely with the geometric dimension of the dataset and that can be combined with classical approaches like isocontouring and animation of slices of n.D data. We completely abandon (for core simplicity) rendering techniques, such as hidden surface removal or lighting or radiosity, that enhance three dimensional realism and concentrate on the real-time display of images that highlight structural (topological) features of the nD dataset (holes, tunnels, cavities, depressions, extrema, etc). Hyper-volume visualization on the one hand is a generalization of direct parallel projection methods in volume rendering. To achieve efficiency (and real-time performance on a graphics workstation) we combine the advantages of (i) a hierarchical representations of the hyper-volume data for multiresolution display and (ii) generalized object space splatting combined with texture-mapped graphics hardware acceleration. The development of a system that implements display techniques for multidimensional datasets requires careful design of both algorithms and user interfaces that scale linearly with the dimension n of the input geometric space. This is a major challenge since straightforward generalizations of standard techniques that are suitable for display of 3D data yield exceedingly intricate interfaces. For example, a view manipulation graphical user interface is usually based on a rotation of the object about Cartesian rotation axes, with possibly unit quaternions internal representations for the rotation group. Unfortunately the number of independent rotation axes grows quadratically with dimension(three in 3D to six in 4D to ten in 5D to fifteen in 6D space). Going back to the basics of parallel projections, we

  9. Guided Text Search Using Adaptive Visual Analytics

    SciTech Connect (OSTI)

    Steed, Chad A; Symons, Christopher T; Senter, James K; DeNap, Frank A

    2012-10-01

    This research demonstrates the promise of augmenting interactive visualizations with semi- supervised machine learning techniques to improve the discovery of significant associations and insights in the search and analysis of textual information. More specifically, we have developed a system called Gryffin that hosts a unique collection of techniques that facilitate individualized investigative search pertaining to an ever-changing set of analytical questions over an indexed collection of open-source documents related to critical national infrastructure. The Gryffin client hosts dynamic displays of the search results via focus+context record listings, temporal timelines, term-frequency views, and multiple coordinate views. Furthermore, as the analyst interacts with the display, the interactions are recorded and used to label the search records. These labeled records are then used to drive semi-supervised machine learning algorithms that re-rank the unlabeled search records such that potentially relevant records are moved to the top of the record listing. Gryffin is described in the context of the daily tasks encountered at the US Department of Homeland Security s Fusion Center, with whom we are collaborating in its development. The resulting system is capable of addressing the analysts information overload that can be directly attributed to the deluge of information that must be addressed in the search and investigative analysis of textual information.

  10. Theoretical crystallography with the Advanced Visualization System

    SciTech Connect (OSTI)

    Younkin, C.R.; Thornton, E.N.; Nicholas, J.B.; Jones, D.R.; Hess, A.C.

    1993-05-01

    Space is an Application Visualization System (AVS) graphics module designed for crystallographic and molecular research. The program can handle molecules, two-dimensional periodic systems, and three-dimensional periodic systems, all referred to in the paper as models. Using several methods, the user can select atoms, groups of atoms, or entire molecules. Selections can be moved, copied, deleted, and merged. An important feature of Space is the crystallography component. The program allows the user to generate the unit cell from the asymmetric unit, manipulate the unit cell, and replicate it in three dimensions. Space includes the Buerger reduction algorithm which determines the asymmetric unit and the space group of highest symmetry of an input unit cell. Space also allows the user to display planes in the lattice based on Miller indices, and to cleave the crystal to expose the surface. The user can display important precalculated volumetric data in Space, such as electron densities and electrostatic surfaces. With a variety of methods, Space can compute the electrostatic potential of any chemical system based on input point charges.

  11. Visual Outcome in Meningiomas Around Anterior Visual Pathways Treated With Linear Accelerator Fractionated Stereotactic Radiotherapy

    SciTech Connect (OSTI)

    Stiebel-Kalish, Hadas; Reich, Ehud; Gal, Lior; Rappaport, Zvi Harry; Nissim, Ouzi; Pfeffer, Raphael; Spiegelmann, Roberto

    2012-02-01

    Purpose: Meningiomas threatening the anterior visual pathways (AVPs) and not amenable for surgery are currently treated with multisession stereotactic radiotherapy. Stereotactic radiotherapy is available with a number of devices. The most ubiquitous include the gamma knife, CyberKnife, tomotherapy, and isocentric linear accelerator systems. The purpose of our study was to describe a case series of AVP meningiomas treated with linear accelerator fractionated stereotactic radiotherapy (FSRT) using the multiple, noncoplanar, dynamic conformal rotation paradigm and to compare the success and complication rates with those reported for other techniques. Patients and Methods: We included all patients with AVP meningiomas followed up at our neuro-ophthalmology unit for a minimum of 12 months after FSRT. We compared the details of the neuro-ophthalmologic examinations and tumor size before and after FSRT and at the end of follow-up. Results: Of 87 patients with AVP meningiomas, 17 had been referred for FSRT. Of the 17 patients, 16 completed >12 months of follow-up (mean 39). Of the 16 patients, 11 had undergone surgery before FSRT and 5 had undergone FSRT as first-line management. Tumor control was achieved in 14 of the 16 patients, with three meningiomas shrinking in size after RT. Two meningiomas progressed, one in an area that was outside the radiation field. The visual function had improved in 6 or stabilized in 8 of the 16 patients (88%) and worsened in 2 (12%). Conclusions: Linear accelerator fractionated RT using the multiple noncoplanar dynamic rotation conformal paradigm can be offered to patients with meningiomas that threaten the anterior visual pathways as an adjunct to surgery or as first-line treatment, with results comparable to those reported for other stereotactic RT techniques.

  12. Visual Analytics: Building a Vibrant and Resilient National Science

    SciTech Connect (OSTI)

    Wong, Pak C.; Thomas, James J.

    2009-09-20

    Five years after the science of visual analytics was formally established, we attempt to use two different studies to assess the current state of the community and evaluate the progress the community has made in the past few years. The first study involves a comparison analysis of intellectual and scholastic accomplishments recently made by the visual analytics community. The second one aims to measure the degree of community reach and internet penetration of visual-analytics-related resources. This paper describes our efforts to harvest the study data, conduct analysis, and make interpretations based on parallel comparisons with five other established computer science areas.

  13. Temporal-contrast measurements of a white-light-seeded noncollinear optical parametric amplifier

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Bromage, J.; Dorrer, C.; Zuegel, J. D.

    2015-09-01

    Ultra-intense optical parametric chirped-pulse systems require front ends with broad bandwidth and high temporal contrast. Temporal cross-correlation measurements of a white-light–seeded noncollinear optical parametric amplifier (NOPA) show that its prepulse contrast exceeds the 120 dB dynamic range of the broadband NOPA-based cross-correlator.

  14. Anisotropy Characterization of I-125 Seed with Attached Encapsulated Cobalt Chloride Complex Contrast Agent Markers for MRI-Based Prostate Brachytherapy

    SciTech Connect (OSTI)

    Frank, Steven J., E-mail: sjfrank@mdanderson.or [Department of Radiation Oncology, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States); Tailor, Ramesh C.; Kudchadker, Rajat J. [Department of Radiation Physics, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States); Martirosyan, Karen S. [Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX (United States); Stafford, R. Jason; Elliott, Andrew M. [Department of Imaging Physics, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States); Swanson, David A. [Department of Urology, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States); Sing, David; Choi, Jonathan [Department of Radiation Oncology, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States); Mourtada, Firas; Ibbott, Geoffrey S. [Department of Radiation Physics, University of Texas M. D. Anderson Cancer Center, Houston, TX (United States)

    2011-07-01

    We have developed a novel MRI marker for prostate brachytherapy. The purpose of this study was to evaluate the changes in anisotropy when cobalt chloride complex contrast agent encapsulated contrast agent markers (C4-ECAM) were placed adjacent to an iodine-125 (I-125) titanium seed, and to verify that the C4-ECAMs were visible on magnetic resonance imaging (MRI) after radiation exposure. Two C4-ECAMs were verified to be MRI visible in a phantom before radiation exposure. The C4-ECAMs were then attached to each end of a 12.7-U (10-mCi) I-125 titanium seed in a polymer tube. Anisotropy was measured and analyzed with the seed alone and with attached C4-ECAMs by suspending thermoluminescent dosimeters in a water phantom in 2 circles surrounding the radioactive source with radius of 1 or 2 cm. A T1-weighted MRI evaluation of C4-ECAMs was then performed after exposure to the amount of radiation typically delivered during 1 month of prostate brachytherapy. Measured values of the anisotropy function F(r, {theta}) for the I-125 seed with and without the C4-ECAMs were mutually statistically indistinguishable (standard error of the mean <4.2%) and agreed well with published TG-43 values for the bare seed. As expected, the anisotropy function {phi}{sub an}(r) for the 2 datasets (with and without C4-ECAMs) derived from the measured F(r, {theta}) did not exhibit statistically measurable difference. Both datasets showed agreement with the published TG-43 {phi}{sub an}(r) for the bare seed. The C4-ECAMs were well visualized by MRI after 1 month of radiation exposure. There were no changes in anisotropy when the C4-ECAMs were placed next to an I-125 radioactive seed, and the C4-ECAMs were visualized after radiation exposure.

  15. Effects of Field of View and Visual Complexity on Virtual Reality Training Effectiveness for a Visual Scanning Task

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Ragan, Eric D.; Bowman, Doug A.; Kopper, Regis; Stinson, Cheryl; Scerbo, Siroberto; McMahan, Ryan P.

    2015-02-13

    Virtual reality training systems are commonly used in a variety of domains, and it is important to understand how the realism of a training simulation influences training effectiveness. The paper presents a framework for evaluating the effects of virtual reality fidelity based on an analysis of a simulation’s display, interaction, and scenario components. Following this framework, we conducted a controlled experiment to test the effects of fidelity on training effectiveness for a visual scanning task. The experiment varied the levels of field of view and visual realism during a training phase and then evaluated scanning performance with the simulator’s highestmore » level of fidelity. To assess scanning performance, we measured target detection and adherence to a prescribed strategy. The results show that both field of view and visual realism significantly affected target detection during training; higher field of view led to better performance and higher visual realism worsened performance. Additionally, the level of visual realism during training significantly affected learning of the prescribed visual scanning strategy, providing evidence that high visual realism was important for learning the technique. The results also demonstrate that task performance during training was not always a sufficient measure of mastery of an instructed technique. That is, if learning a prescribed strategy or skill is the goal of a training exercise, performance in a simulation may not be an appropriate indicator of effectiveness outside of training—evaluation in a more realistic setting may be necessary.« less

  16. VisPortal: Deploying grid-enabled visualization tools through...

    Office of Scientific and Technical Information (OSTI)

    tools through a web-portal interface Citation Details In-Document Search Title: VisPortal: Deploying grid-enabled visualization tools through a web-portal interface You ...

  17. VisPortal: Deploying grid-enabled visualization tools through...

    Office of Scientific and Technical Information (OSTI)

    tools through a web-portal interface Citation Details In-Document Search Title: VisPortal: Deploying grid-enabled visualization tools through a web-portal interface The ...

  18. Simulation and visualization of attosecond stimulated x-ray Raman...

    Office of Scientific and Technical Information (OSTI)

    Simulation and visualization of attosecond stimulated x-ray Raman spectroscopy signals in trans-N-methylacetamide at the nitrogen and oxygen K-edges Citation Details In-Document ...

  19. Topology-based Visualization and Analysis of High-dimensional...

    Office of Scientific and Technical Information (OSTI)

    Topology-based Visualization and Analysis of High-dimensional Data and Time-varying Data at the Extreme Scale Citation Details In-Document Search Title: Topology-based ...

  20. Eliot Feibush leads new Princeton consortium to visualize Big...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Eliot Feibush leads new Princeton consortium to visualize Big Data By John Greenwald April 22, 2015 Tweet Widget Google Plus One Share on Facebook Eliot Feibush (Photo by Elle ...

  1. Eliot Feibush leads new Princeton consortium to visualize Big...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Eliot Feibush leads new Princeton consortium to visualize Big Data By John Greenwald April 20, 2015 Tweet Widget Google Plus One Share on Facebook Eliot Feibush (Photo by Elle ...

  2. SciDAC Visualization and Analytics Center for Enabling Technologies

    SciTech Connect (OSTI)

    Joy, Kenneth I.

    2014-09-14

    This project focuses on leveraging scientific visualization and analytics software technology as an enabling technology for increasing scientific productivity and insight. Advances in computational technology have resulted in an "information big bang," which in turn has created a significant data understanding challenge. This challenge is widely acknowledged to be one of the primary bottlenecks in contemporary science. The vision for our Center is to respond directly to that challenge by adapting, extending, creating when necessary and deploying visualization and data understanding technologies for our science stakeholders. Using an organizational model as a Visualization and Analytics Center for Enabling Technologies (VACET), we are well positioned to be responsive to the needs of a diverse set of scientific stakeholders in a coordinated fashion using a range of visualization, mathematics, statistics, computer and computational science and data management technologies.

  3. Visualization of Fuel Cell Water Transport and Characterization under

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Freezing Conditions | Department of Energy Visualization of Fuel Cell Water Transport and Characterization under Freezing Conditions Visualization of Fuel Cell Water Transport and Characterization under Freezing Conditions This presentation, which focuses on fuel cell water transport, was given by Satish Kandlikar at a DOE fuel cell meeting in February 2007. new_fc_kandlikar_rit.pdf (1.18 MB) More Documents & Publications Water Transport Exploratory Studies Fundamental Issues in Subzero

  4. VERDE: Visualizing Energy Resources Dynamically on Earth - Energy

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Innovation Portal Energy Analysis Energy Analysis Electricity Transmission Electricity Transmission Find More Like This Return to Search VERDE: Visualizing Energy Resources Dynamically on Earth Oak Ridge National Laboratory Contact ORNL About This Technology Technology Marketing SummaryVERDE is a software application utilizing the Google Earth(c) platform to provide real time visualization of the electric power grid.DescriptionVERDE is capable of layering different types of information on

  5. Visual Information for the Desktop, version 1.0

    Energy Science and Technology Software Center (OSTI)

    2006-03-29

    VZIN integrates visual analytics capabilities into popular desktop tools to aid a user in searching and understanding an information space. VZIN allows users to Drag-Drop-Visualize-Explore-Organize information within tools such as Microsoft Office, Windows Explorer, Excel, and Outlook. VZIN is tailorable to specific client or industry requirements. VZIN follows the desktop metaphors so that advanced analytical capabilities are available with minimal user training.

  6. PROJECT PROFILE: Visualization and Analytics of Distribution Systems with

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Deep Penetration of Distributed Energy Resources (SuNLaMP) | Department of Energy Visualization and Analytics of Distribution Systems with Deep Penetration of Distributed Energy Resources (SuNLaMP) PROJECT PROFILE: Visualization and Analytics of Distribution Systems with Deep Penetration of Distributed Energy Resources (SuNLaMP) Funding Program: SuNLaMP SunShot Subprogram: Systems Integration Location: SLAC National Accelerator Laboratory, Menlo Park, CA SunShot Award Amount: $4,000,000

  7. John Papanikolas: Visualizing Charge Carrier Motion in Nanowires Using

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Femtosecond Pump-Probe Microscopy | Center for Energy Efficient Materials John Papanikolas: Visualizing Charge Carrier Motion in Nanowires Using Femtosecond Pump-Probe Microscopy Apr 17, 2014 | 4:00 PM - 5:00 PM John Papanikolas Professor of Chemistry & Deputy Director, EFRC on Solar Fuels University of North Carolina, Chapel Hill Visualizing Charge Carrier Motion in Nanowires Using Femtosecond Pump-Probe Microscopy April 17, 2014 | 4:00pm | ESB 1001 Faculty host: Dan Morse

  8. Appendix TFIELD Attachment A: Attachment A: TFIELD-2014 Visualization

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Attachment A: TFIELD-2014 Visualization United States Department of Energy Waste Isolation Pilot Plant Carlsbad Field Office Carlsbad, New Mexico Compliance Recertification Application 2014 Attachment A: TFIELD-2014 Visualization This attachment contains figures for Appendix TFIELD-2014, related to the Culebra T-Field calibration process, performed as part of the 2009 Compliance Recertification Application (CRA-2009) Performance Assessment Baseline Calculation (PABC). These parameter inputs and

  9. Quantification and Visualization of Variation in Anatomical Trees

    SciTech Connect (OSTI)

    Amenta, Nina; Datar, Manasi; Dirksen, Asger; de Bruihne, Marleen; Feragen, Aasa; Ge, Xiaoyin; Holst Pedersen, Jesper; Howard, Marylesa; Owen, Megan; Petersen, Jens; Shi, Jie; Xu, Qiuping

    2015-07-01

    This paper presents two approaches to quantifying and visualizing variation in datasets of trees. The first approach localizes subtrees in which significant population differences are found through hypothesis testing and sparse classifiers on subtree features. The second approach visualizes the global metric structure of datasets through low-distortion embedding into hyperbolic planes in the style of multidimensional scaling. A case study is made on a dataset of airway trees in relation to Chronic Obstructive Pulmonary Disease.

  10. Large Data Visualization on Distributed Memory Mulit-GPU Clusters

    SciTech Connect (OSTI)

    Childs, Henry R.

    2010-03-01

    Data sets of immense size are regularly generated on large scale computing resources. Even among more traditional methods for acquisition of volume data, such as MRI and CT scanners, data which is too large to be effectively visualization on standard workstations is now commonplace. One solution to this problem is to employ a 'visualization cluster,' a small to medium scale cluster dedicated to performing visualization and analysis of massive data sets generated on larger scale supercomputers. These clusters are designed to fit a different need than traditional supercomputers, and therefore their design mandates different hardware choices, such as increased memory, and more recently, graphics processing units (GPUs). While there has been much previous work on distributed memory visualization as well as GPU visualization, there is a relative dearth of algorithms which effectively use GPUs at a large scale in a distributed memory environment. In this work, we study a common visualization technique in a GPU-accelerated, distributed memory setting, and present performance characteristics when scaling to extremely large data sets.

  11. The Ultra-scale Visualization Climate Data Analysis Tools (UV-CDAT): Data Analysis and Visualization for Geoscience Data

    SciTech Connect (OSTI)

    Williams, Dean; Doutriaux, Charles; Patchett, John; Williams, Sean; Shipman, Galen; Miller, Ross; Steed, Chad; Krishnan, Harinarayan; Silva, Claudio; Chaudhary, Aashish; Bremer, Peer-Timo; Pugmire, David; Bethel, E. Wes; Childs, Hank; Prabhat, Mr.; Geveci, Berk; Bauer, Andrew; Pletzer, Alexander; Poco, Jorge; Ellqvist, Tommy; Santos, Emanuele; Potter, Gerald; Smith, Brian; Maxwell, Thomas; Kindig, David; Koop, David

    2013-05-01

    To support interactive visualization and analysis of complex, large-scale climate data sets, UV-CDAT integrates a powerful set of scientific computing libraries and applications to foster more efficient knowledge discovery. Connected through a provenance framework, the UV-CDAT components can be loosely coupled for fast integration or tightly coupled for greater functionality and communication with other components. This framework addresses many challenges in the interactive visual analysis of distributed large-scale data for the climate community.

  12. A report documenting the completion of the Los Alamos National Laboratory portion of the ASC level II milestone ""Visualization on the supercomputing platform

    SciTech Connect (OSTI)

    Ahrens, James P; Patchett, John M; Lo, Li - Ta; Mitchell, Christopher; Mr Marle, David; Brownlee, Carson

    2011-01-24

    This report provides documentation for the completion of the Los Alamos portion of the ASC Level II 'Visualization on the Supercomputing Platform' milestone. This ASC Level II milestone is a joint milestone between Sandia National Laboratory and Los Alamos National Laboratory. The milestone text is shown in Figure 1 with the Los Alamos portions highlighted in boldfaced text. Visualization and analysis of petascale data is limited by several factors which must be addressed as ACES delivers the Cielo platform. Two primary difficulties are: (1) Performance of interactive rendering, which is the most computationally intensive portion of the visualization process. For terascale platforms, commodity clusters with graphics processors (GPUs) have been used for interactive rendering. For petascale platforms, visualization and rendering may be able to run efficiently on the supercomputer platform itself. (2) I/O bandwidth, which limits how much information can be written to disk. If we simply analyze the sparse information that is saved to disk we miss the opportunity to analyze the rich information produced every timestep by the simulation. For the first issue, we are pursuing in-situ analysis, in which simulations are coupled directly with analysis libraries at runtime. This milestone will evaluate the visualization and rendering performance of current and next generation supercomputers in contrast to GPU-based visualization clusters, and evaluate the perfromance of common analysis libraries coupled with the simulation that analyze and write data to disk during a running simulation. This milestone will explore, evaluate and advance the maturity level of these technologies and their applicability to problems of interest to the ASC program. In conclusion, we improved CPU-based rendering performance by a a factor of 2-10 times on our tests. In addition, we evaluated CPU and CPU-based rendering performance. We encourage production visualization experts to consider using CPU

  13. QUIET-SUN INTENSITY CONTRASTS IN THE NEAR-ULTRAVIOLET AS MEASURED FROM SUNRISE

    SciTech Connect (OSTI)

    Hirzberger, J.; Feller, A.; Riethmueller, T. L.; Schuessler, M.; Borrero, J. M.; Gandorfer, A.; Solanki, S. K.; Barthol, P.; Afram, N.; Unruh, Y. C.; Berdyugina, S. V.; Berkefeld, T.; Schmidt, W.; Bonet, J. A.; MartInez Pillet, V.; Knoelker, M.; Title, A. M.

    2010-11-10

    We present high-resolution images of the Sun in the near-ultraviolet spectral range between 214 nm and 397 nm as obtained from the first science flight of the 1 m SUNRISE balloon-borne solar telescope. The quiet-Sun rms intensity contrasts found in this wavelength range are among the highest values ever obtained for quiet-Sun solar surface structures-up to 32.8% at a wavelength of 214 nm. We compare the rms contrasts obtained from the observational data with theoretical intensity contrasts obtained from numerical magnetohydrodynamic simulations. For 388 nm and 312 nm the observations agree well with the numerical simulations whereas at shorter wavelengths discrepancies between observed and simulated contrasts remain.

  14. Contrasting Behavior of GaP(001) and InP(001) at the Interface...

    Office of Scientific and Technical Information (OSTI)

    at the Interface with Water Citation Details In-Document Search Title: Contrasting Behavior of GaP(001) and InP(001) at the Interface with Water Authors: Wood, B C ; ...

  15. Hydrogen atom donor compounds as contrast enhancers for black-and-white photothermographic and thermographic elements

    DOE Patents [OSTI]

    Harring, Lori S.; Simpson, Sharon M.; Sansbury, Francis H.

    1997-01-01

    Hydrogen atom donor compounds are useful as contrast enhancers when used in combination with (i) hindered phenol developers, and (ii) trityl hydrazide and/or formyl-phenyl hydrazine co-developers, to produce ultra-high contrast black-and-white photothermographic and thermographic elements. The photothermographic and thermographic elements may be used as a photomask in a process where there is a subsequent exposure of an ultraviolet or short wavelength visible radiation-sensitive imageable medium.

  16. Image segmentation of nanoscale Zernike phase contrast X-ray computed tomography images

    SciTech Connect (OSTI)

    Kumar, Arjun S.; Mandal, Pratiti; Zhang, Yongjie; Litster, Shawn

    2015-05-14

    Zernike phase contrast is a useful technique for nanoscale X-ray computed tomography (CT) imaging of materials with a low X-ray absorption coefficient. It enhances the image contrast by phase shifting X-ray waves to create changes in amplitude. However, it creates artifacts that hinder the use of traditional image segmentation techniques. We propose an image restoration method that models the X-ray phase contrast optics and the three-dimensional image reconstruction method. We generate artifact-free images through an optimization problem that inverts this model. Though similar approaches have been used for Zernike phase contrast in visible light microscopy, this optimization employs an effective edge detection method tailored to handle Zernike phase contrast artifacts. We characterize this optics-based restoration method by removing the artifacts in and thresholding multiple Zernike phase contrast X-ray CT images to produce segmented results that are consistent with the physical specimens. We quantitatively evaluate and compare our method to other segmentation techniques to demonstrate its high accuracy.

  17. Visualizations of coherent center domains in local Polyakov loops

    SciTech Connect (OSTI)

    Stokes, Finn M. Kamleh, Waseem; Leinweber, Derek B.

    2014-09-15

    Quantum Chromodynamics exhibits a hadronic confined phase at low to moderate temperatures and, at a critical temperature T{sub C}, undergoes a transition to a deconfined phase known as the quarkgluon plasma. The nature of this deconfinement phase transition is probed through visualizations of the Polyakov loop, a gauge independent order parameter. We produce visualizations that provide novel insights into the structure and evolution of center clusters. Using the HMC algorithm the percolation during the deconfinement transition is observed. Using 3D rendering of the phase and magnitude of the Polyakov loop, the fractal structure and correlations are examined. The evolution of the center clusters as the gauge fields thermalize from below the critical temperature to above it are also exposed. We observe deconfinement proceeding through a competition for the dominance of a particular center phase. We use stout-link smearing to remove small-scale noise in order to observe the large-scale evolution of the center clusters. A correlation between the magnitude of the Polyakov loop and the proximity of its phase to one of the center phases of SU(3) is evident in the visualizations. - Highlights: We produce visualizations of center clusters in Polyakov loops. The evolution of center clusters with HMC simulation time is examined. Visualizations provide novel insights into the percolation of center clusters. The magnitude and phase of the Polyakov loop are studied. A correlation between the magnitude and center phase proximity is evident.

  18. Visual Data Analysis as an Integral Part of Environmental Management

    SciTech Connect (OSTI)

    Meyer, Joerg; Bethel, E. Wes; Horsman, Jennifer L.; Hubbard, Susan S.; Krishnan, Harinarayan; Romosan,, Alexandru; Keating, Elizabeth H.; Monroe, Laura; Strelitz, Richard; Moore, Phil; Taylor, Glenn; Torkian, Ben; Johnson, Timothy C.; Gorton, Ian

    2012-10-01

    The U.S. Department of Energy's (DOE) Office of Environmental Management (DOE/EM) currently supports an effort to understand and predict the fate of nuclear contaminants and their transport in natural and engineered systems. Geologists, hydrologists, physicists and computer scientists are working together to create models of existing nuclear waste sites, to simulate their behavior and to extrapolate it into the future. We use visualization as an integral part in each step of this process. In the first step, visualization is used to verify model setup and to estimate critical parameters. High-performance computing simulations of contaminant transport produces massive amounts of data, which is then analyzed using visualization software specifically designed for parallel processing of large amounts of structured and unstructured data. Finally, simulation results are validated by comparing simulation results to measured current and historical field data. We describe in this article how visual analysis is used as an integral part of the decision-making process in the planning of ongoing and future treatment options for the contaminated nuclear waste sites. Lessons learned from visually analyzing our large-scale simulation runs will also have an impact on deciding on treatment measures for other contaminated sites.

  19. Report of improved performance in Talbot–Lau phase-contrast computed tomography

    SciTech Connect (OSTI)

    Weber, Thomas Pelzer, Georg; Rieger, Jens; Ritter, André; Anton, Gisela

    2015-06-15

    Purpose: Many expectations have been raised since the use of conventional x-ray tubes on grating-based x-ray phase-contrast imaging. Despite a reported increase in contrast-to-noise ratio (CNR) in many publications, there is doubt on whether phase-contrast computed tomography (CT) is advantageous in clinical CT scanners in vivo. The aim of this paper is to contribute to this discussion by analyzing the performance of a phase-contrast CT laboratory setup. Methods: A phase-contrast CT performance analysis was done. Projection images of a phantom were recorded, and image slices were reconstructed using standard filtered back projection methods. The resulting image slices were analyzed by determining the CNRs in the attenuation and phase image. These results were compared to analytically calculated expectations according to the already published phase-contrast CT performance analysis by Raupach and Flohr [Med. Phys. 39, 4761–4774 (2012)]. There, a severe mistake was found leading to wrong predictions of the performance of phase-contrast CT. The error was corrected and with the new formulae, the experimentally obtained results matched the analytical calculations. Results: The squared ratios of the phase-contrast CNR and the attenuation CNR obtained in the authors’ experiment are five- to ten-fold higher than predicted by Raupach and Flohr [Med. Phys. 39, 4761–4774 (2012)]. The effective lateral spatial coherence length deduced outnumbers the already optimistic assumption of Raupach and Flohr [Med. Phys. 39, 4761–4774 (2012)] by a factor of 3. Conclusions: The authors’ results indicate that the assumptions made in former performance analyses are pessimistic. The break-even point, when phase-contrast CT outperforms attenuation CT, is within reach even with realistic, nonperfect gratings. Further improvements to state-of-the-art clinical CT scanners, like increasing the spatial resolution, could change the balance in favor of phase-contrast computed tomography

  20. High Performance Multivariate Visual Data Exploration for Extremely Large Data

    SciTech Connect (OSTI)

    Rubel, Oliver; Wu, Kesheng; Childs, Hank; Meredith, Jeremy; Geddes, Cameron G.R.; Cormier-Michel, Estelle; Ahern, Sean; Weber, Gunther H.; Messmer, Peter; Hagen, Hans; Hamann, Bernd; Bethel, E. Wes; Prabhat,

    2008-08-22

    One of the central challenges in modern science is the need to quickly derive knowledge and understanding from large, complex collections of data. We present a new approach that deals with this challenge by combining and extending techniques from high performance visual data analysis and scientific data management. This approach is demonstrated within the context of gaining insight from complex, time-varying datasets produced by a laser wakefield accelerator simulation. Our approach leverages histogram-based parallel coordinates for both visual information display as well as a vehicle for guiding a data mining operation. Data extraction and subsetting are implemented with state-of-the-art index/query technology. This approach, while applied here to accelerator science, is generally applicable to a broad set of science applications, and is implemented in a production-quality visual data analysis infrastructure. We conduct a detailed performance analysis and demonstrate good scalability on a distributed memory Cray XT4 system.

  1. Visual Data Analysis as an Integral Part of Environmental Management

    SciTech Connect (OSTI)

    Meyer, Joerg; Bethel, E. Wes; Horsman, Jennifer L.; Hubbard, Susan S.; Krishnan, Hari; Romosan, Alex; Keating, Elizabeth; Monroe, Laura M.; Strelitz, Richard; Moore, Philip; Taylor, Glenn; Torkian, Ben; Johnson, Timothy C.; Gorton, Ian

    2012-12-01

    The U.S. Department of Energy's (DOE) Office of Environmental Management (DOE/EM) currently supports an effort to understand and predict contaminant fate and transport in natural and engineered systems. Geologists, hydrologists, physicists and computer scientists are working together to create models of existing contaminated sites and to simulate their behavior. Simulation results are verified based on historical data and extrapolated into the future. Visualization is used for model setup verification, visual analysis of high-performance computing simulation results, and uncertainty quantification. This article describes the challenges and solutions for visual data analysis, which impacts the decision-making process for each of the contaminated sites. Lessons learned from these simulations will also have an impact on deciding on treatment measures for other, similarly contaminated areas, including those affected by more recent events, such as Chernobyl and Fukushima.

  2. Beam collimation with polycapillary x-ray optics for high contrast high resolution monochromatic imaging

    SciTech Connect (OSTI)

    Sugiro, Francisca R.; Li Danhong; MacDonald, C.A.

    2004-12-01

    Monochromatic imaging can provide better contrast and resolution than conventional broadband radiography. In broadband systems, low energy photons do not contribute to the image, but are merely absorbed, while high energy photons produce scattering that degrades the image. By tuning to the optimal energy, one can eliminate undesirable lower and higher energies. Monochromatization is achieved by diffraction from a single crystal. A crystal oriented to diffract at a particular energy, in this case the characteristic line energy, diffracts only those photons within a narrow range of angles. The resultant beam from a divergent source is nearly parallel, but not very intense. To increase the intensity, collimation was performed with polycapillary x-ray optics, which can collect radiation from a divergent source and redirect it into a quasi parallel beam. Contrast and resolution measurements were performed with diffracting crystals with both high and low angular acceptance. Testing was first done at 8 keV with an intense copper rotating anode x-ray source, then 17.5 keV measurements were made with a low power molybdenum source. At 8 keV, subject contrast was a factor of five higher than for the polychromatic case. At 17.5 keV, monochromatic contrast was two times greater than the conventional polychromatic contrast. The subject contrasts measured at both energies were in good agreement with theory. An additional factor of two increase in contrast, for a total gain of four, is expected at 17.5 keV from the removal of scatter. Scatter might be simply removed using an air gap, which does not degrade resolution with a parallel beam.

  3. Your Data Analysis & Visualization Needs Mira Performance Boot Camp

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Mira Performance Boot Camp May 20, 2015 Joseph A. Insley Tukey- High Performance Visualization Cluster ¤ 96 AMD Dual Opteron 6128 Compute Nodes ¥ 16 total CPU cores per node ¥ 64 GB RAM ¥ 2 NVIDIA Tesla M2070 GPUs, 6 GB RAM each ¤ 6 terabytes of CPU RAM, 1.1 terabytes of GPU RAM ¤ Peak GPU Performance: Over 98 TeraFLOPS ¤ Cross-Mounted Filesystem with Mira 2 Cooley - Expected June production ¤ Analytics/Visualization cluster ¤ Peak 223 TF ¤ 126 nodes; each

  4. Interactive visualization of particle beams for accelerator design

    SciTech Connect (OSTI)

    Wilson, Brett; Ma, Kwan-Liu; Qiang, Ji; Ryne, Robert

    2002-01-15

    We describe a hybrid data-representation and rendering technique for visualizing large-scale particle data generated from numerical modeling of beam dynamics. The basis of the technique is mixing volume rendering and point rendering according to particle density distribution, visibility, and the user's instruction. A hierarchical representation of the data is created on a parallel computer, allowing real-time partitioning into high-density areas for volume rendering, and low-density areas for point rendering. This allows the beam to be interactively visualized while preserving the fine structure usually visible only with slow point based rendering techniques.

  5. The CommonGround Visual Paradigm for Biosurveillance

    SciTech Connect (OSTI)

    Livnat, Yarden; Jurrus, Elizabeth R.; Gundlapalli, Adi V.; Gestland, Per

    2013-06-14

    Biosurveillance is a critical area in the intelligence community for real-time detection of disease outbreaks. Identifying epidemics enables analysts to detect and monitor disease outbreaks that might be spread from natural causes or from possible biological warfare attacks. Containing these events and disseminating alerts requires the ability to rapidly find, classify and track harmful biological signatures. In this paper, we describe a novel visual paradigm to conduct biosurveillance using an Infectious Disease Weather Map. Our system provides a visual common ground in which users can view, explore and discover emerging concepts and correlations such as symptoms, syndromes, pathogens, and geographic locations.

  6. Visualizing Value: Game-Changing Solar Technologies for Homeowners |

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Department of Energy Visualizing Value: Game-Changing Solar Technologies for Homeowners Visualizing Value: Game-Changing Solar Technologies for Homeowners July 29, 2016 - 10:00am Addthis Sistine Solar’s completed SolarSkin installation on a Katahdin log cabin. The company’s SolarSkin panels seamlessly blend in with the cabin’s green roof. | Photo Courtesy of Sistine Solar Sistine Solar's completed SolarSkin installation on a Katahdin log cabin. The company's SolarSkin panels

  7. Phase-contrast Hounsfield units of fixated and non-fixated soft-tissue samples

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Willner, Marian; Fior, Gabriel; Marschner, Mathias; Birnbacher, Lorenz; Schock, Jonathan; Braun, Christian; Fingerle, Alexander A.; Noël, Peter B.; Rummeny, Ernst J.; Pfeiffer, Franz; et al

    2015-08-31

    X-ray phase-contrast imaging is a novel technology that achieves high soft-tissue contrast. Although its clinical impact is still under investigation, the technique may potentially improve clinical diagnostics. In conventional attenuation-based X-ray computed tomography, radiological diagnostics are quantified by Hounsfield units. Corresponding Hounsfield units for phase-contrast imaging have been recently introduced, enabling a setup-independent comparison and standardized interpretation of imaging results. Thus far, the experimental values of few tissue types have been reported; these values have been determined from fixated tissue samples. This study presents phase-contrast Hounsfield units for various types of non-fixated human soft tissues. A large variety of tissuemore » specimens ranging from adipose, muscle and connective tissues to liver, kidney and pancreas tissues were imaged by a grating interferometer with a rotating-anode X-ray tube and a photon-counting detector. In addition, we investigated the effects of formalin fixation on the quantitative phase-contrast imaging results.« less

  8. Phase-contrast Hounsfield units of fixated and non-fixated soft-tissue samples

    SciTech Connect (OSTI)

    Willner, Marian; Fior, Gabriel; Marschner, Mathias; Birnbacher, Lorenz; Schock, Jonathan; Braun, Christian; Fingerle, Alexander A.; Noël, Peter B.; Rummeny, Ernst J.; Pfeiffer, Franz; Herzen, Julia; Rozhkova, Elena A.

    2015-08-31

    X-ray phase-contrast imaging is a novel technology that achieves high soft-tissue contrast. Although its clinical impact is still under investigation, the technique may potentially improve clinical diagnostics. In conventional attenuation-based X-ray computed tomography, radiological diagnostics are quantified by Hounsfield units. Corresponding Hounsfield units for phase-contrast imaging have been recently introduced, enabling a setup-independent comparison and standardized interpretation of imaging results. Thus far, the experimental values of few tissue types have been reported; these values have been determined from fixated tissue samples. This study presents phase-contrast Hounsfield units for various types of non-fixated human soft tissues. A large variety of tissue specimens ranging from adipose, muscle and connective tissues to liver, kidney and pancreas tissues were imaged by a grating interferometer with a rotating-anode X-ray tube and a photon-counting detector. In addition, we investigated the effects of formalin fixation on the quantitative phase-contrast imaging results.

  9. High-Resolution Phase-Contrast Imaging of Submicron Particles in Unstained Lung Tissue

    SciTech Connect (OSTI)

    Schittny, J. C.; Barre, S. F.; Haberthuer, D.; Mokso, R.; Tsuda, A.; Stampanoni, M.

    2011-09-09

    To access the risks and chances of deposition of submicron particles in the gas-exchange area of the lung, a precise three-dimensional (3D)-localization of the sites of deposition is essential--especially because local peaks of deposition are expected in the acinar tree and in individual alveoli. In this study we developed the workflow for such an investigation. We administered 200-nm gold particles to young adult rats by intratracheal instillation. After fixation and paraffin embedding, their lungs were imaged unstained using synchrotron radiation x-ray tomographic microscopy (SRXTM) at the beamline TOMCAT (Swiss Light Source, Villigen, Switzerland) at sample detector distances of 2.5 mm (absorption contrast) and of 52.5 mm (phase contrast). A segmentation based on a global threshold of grey levels was successfully done on absorption-contrast images for the gold and on the phase-contrast images for the tissue. The smallest spots containing gold possessed a size of 1-2 voxels of 370-nm side length. We conclude that a combination of phase and absorption contrast SRXTM imaging is necessary to obtain the correct segmentation of both tissue and gold particles. This method will be used for the 3D localization of deposited particles in the gas-exchange area of the lung.

  10. Nonlinear contrast enhancement in photoacoustic molecular imaging with gold nanosphere encapsulated nanoemulsions

    SciTech Connect (OSTI)

    Wei, Chen-wei; Lombardo, Michael; Larson-Smith, Kjersta; Perez, Camilo; Xia, Jinjun; Matula, Thomas; Pozzo, Danilo; O'Donnell, Matthew; Pelivanov, Ivan

    2014-01-20

    A composite contrast agent, a nanoemulsion bead with assembled gold nanospheres at the interface, is proposed to improve the specific contrast of photoacoustic molecular imaging. A phase transition in the bead's core is induced by absorption of a nanosecond laser pulse with a fairly low laser fluence (∼3.5 mJ/cm{sup 2}), creating a transient microbubble through dramatically enhanced thermal expansion. This generates nonlinear photoacoustic signals with more than 10 times larger amplitude compared to that of a linear agent with the same optical absorption. By applying a differential scheme similar to ultrasound pulse inversion, more than 40 dB contrast enhancement is demonstrated with suppression of background signals.

  11. Lighting Studies for Fuelling Machine Deployed Visual Inspection Tool

    SciTech Connect (OSTI)

    Stoots, Carl; Griffith, George

    2015-04-01

    Under subcontract to James Fisher Nuclear, Ltd., INL has been reviewing advanced vision systems for inspection of graphite in high radiation, high temperature, and high pressure environments. INL has performed calculations and proof-of-principle measurements of optics and lighting techniques to be considered for visual inspection of graphite fuel channels in AGR reactors in UK.

  12. Human Factors Evaluation of Advanced Electric Power Grid Visualization Tools

    SciTech Connect (OSTI)

    Greitzer, Frank L.; Dauenhauer, Peter M.; Wierks, Tamara G.; Podmore, Robin

    2009-04-01

    This report describes initial human factors evaluation of four visualization tools (Graphical Contingency Analysis, Force Directed Graphs, Phasor State Estimator and Mode Meter/ Mode Shapes) developed by PNNL, and proposed test plans that may be implemented to evaluate their utility in scenario-based experiments.

  13. Carbon Smackdown: Visualizing Clean Energy (LBNL Summer Lecture Series)

    ScienceCinema (OSTI)

    Meza, Juan [LBNL Computational Research Division

    2010-09-01

    The final Carbon Smackdown match took place Aug. 9, 2010. Juan Meza of the Computational Research Division revealed how scientists use computer visualizations to accelerate climate research and discuss the development of next-generation clean energy technologies such as wind turbines and solar cells.

  14. Fuel Cell Backup Power Geographical Visualization Map (Fact Sheet)

    SciTech Connect (OSTI)

    Not Available

    2012-12-01

    This NREL Hydrogen and Fuel Cell Technical Highlight describes a time-lapse geographical visualization map of early market use of fuel cells for telecommunications backup power. The map synthesizes data being analyzed by NREL's Technology Validation team for the U.S. Department of Energy (DOE) Fuel Cell Technologies Program with DOE's publicly available annual summaries of electric disturbance events.

  15. Practical method and device for enhancing pulse contrast ratio for lasers and electron accelerators

    DOE Patents [OSTI]

    Zhang, Shukui; Wilson, Guy

    2014-09-23

    An apparatus and method for enhancing pulse contrast ratios for drive lasers and electron accelerators. The invention comprises a mechanical dual-shutter system wherein the shutters are placed sequentially in series in a laser beam path. Each shutter of the dual shutter system has an individually operated trigger for opening and closing the shutter. As the triggers are operated individually, the delay between opening and closing first shutter and opening and closing the second shutter is variable providing for variable differential time windows and enhancement of pulse contrast ratio.

  16. OPCPA front end and contrast optimization for the OMEGA EP kilojoule, picosecond laser

    SciTech Connect (OSTI)

    Dorrer, C.; Consentino, A.; Irwin, D.; Qiao, J.; Zuegel, J. D.

    2015-09-01

    OMEGA EP is a large-scale laser system that combines optical parametric amplification and solid-state laser amplification on two beamlines to deliver high-intensity, high-energy optical pulses. The temporal contrast of the output pulse is limited by the front-end parametric fluorescence and other features that are specific to parametric amplification. The impact of the two-crystal parametric preamplifier, pump-intensity noise, and pump-signal timing is experimentally studied. The implementation of a parametric amplifier pumped by a short pump pulse before stretching, further amplification, and recompression to enhance the temporal contrast of the high-energy short pulse is described.

  17. Temporal Stability of Visual Search-Driven Biometrics

    SciTech Connect (OSTI)

    Yoon, Hong-Jun; Carmichael, Tandy; Tourassi, Georgia

    2015-01-01

    Previously, we have shown the potential of using an individual s visual search pattern as a possible biometric. That study focused on viewing images displaying dot-patterns with different spatial relationships to determine which pattern can be more effective in establishing the identity of an individual. In this follow-up study we investigated the temporal stability of this biometric. We performed an experiment with 16 individuals asked to search for a predetermined feature of a random-dot pattern as we tracked their eye movements. Each participant completed four testing sessions consisting of two dot patterns repeated twice. One dot pattern displayed concentric circles shifted to the left or right side of the screen overlaid with visual noise, and participants were asked which side the circles were centered on. The second dot-pattern displayed a number of circles (between 0 and 4) scattered on the screen overlaid with visual noise, and participants were asked how many circles they could identify. Each session contained 5 untracked tutorial questions and 50 tracked test questions (200 total tracked questions per participant). To create each participant s "fingerprint", we constructed a Hidden Markov Model (HMM) from the gaze data representing the underlying visual search and cognitive process. The accuracy of the derived HMM models was evaluated using cross-validation for various time-dependent train-test conditions. Subject identification accuracy ranged from 17.6% to 41.8% for all conditions, which is significantly higher than random guessing (1/16 = 6.25%). The results suggest that visual search pattern is a promising, fairly stable personalized fingerprint of perceptual organization.

  18. Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT): Semi-Annual Progress Report

    SciTech Connect (OSTI)

    Williams, D N

    2012-02-29

    This report summarizes work carried out by the Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) Team for the period of July 1, 2011 through December 31, 2011. It discusses highlights, overall progress, period goals, and collaborations and lists papers and presentations. The UV-CDAT team is positioned to address the following high-level visualization requirements: (1) Alternative parallel streaming statistics and analysis pipelines - Data parallelism, Task parallelism, Visualization parallelism; (2) Optimized parallel input/output (I/O); (3) Remote interactive execution; (4) Advanced intercomparison visualization; (5) Data provenance processing and capture; and (6) Interfaces for scientists - Workflow data analysis and visualization construction tools, Visualization interfaces.

  19. The neurotoxic effects of N-methyl-N-nitrosourea on the electrophysiological property and visual signal transmission of rat's retina

    SciTech Connect (OSTI)

    Tao, Ye; Chen, Tao; Liu, Bei; Yang, Guo Qing; Peng, Guanghua; Zhang, Hua; Huang, Yi Fei

    2015-07-01

    The neurotoxic effects of N-methyl-N-nitrosourea (MNU) on the inner retinal neurons and related visual signal circuits have not been described in any animal models or human, despite ample morphological evidences about the MNU induced photoreceptor (PR) degeneration. With the helping of MEA (multielectrode array) recording system, we gained the opportunity to systemically explore the neural activities and visual signal pathways of MNU administrated rats. Our MEA research identified remarkable alterations in the electrophysiological properties and firstly provided instructive information about the neurotoxicity of MNU that affects the signal transmission in the inner retina. Moreover, the spatial electrophysiological functions of retina were monitored and found that the focal PRs had different vulnerabilities to the MNU. The MNU-induced PR dysfunction exhibited a distinct spatial- and time-dependent progression. In contrast, the spiking activities of both central and peripheral RGCs altered synchronously in response to the MNU administration. Pharmacological tests suggested that gap junctions played a pivotal role in this homogeneous response of RGCs. SNR analysis of MNU treated retina suggested that the signaling efficiency and fidelity of inner retinal circuits have been ruined by this toxicant, although the microstructure of the inner retina seemed relatively consolidated. The present study provided an appropriate example of MEA investigations on the toxicant induced pathological models and the effects of the pharmacological compounds on neuron activities. The positional MEA information would enrich our knowledge about the pathology of MNU induced RP models, and eventually be instrumental for elucidating the underlying mechanism of human RP. - Highlights: • We systemically explored the neural activities and visual signal pathways of MNU administrated retinas. • The focal photoreceptors had different vulnerabilities to the MNU administration.

  20. Simultaneous topographic and elemental chemical and magnetic contrast in scanning tunneling microscopy

    DOE Patents [OSTI]

    Rose, Volker; Preissner, Curt A; Hla, Saw-Wai; Wang, Kangkang; Rosenmann, Daniel

    2014-09-30

    A method and system for performing simultaneous topographic and elemental chemical and magnetic contrast analysis in a scanning, tunneling microscope. The method and system also includes nanofabricated coaxial multilayer tips with a nanoscale conducting apex and a programmable in-situ nanomanipulator to fabricate these tips and also to rotate tips controllably.

  1. Remote sensing-based estimation of annual soil respiration at two contrasting forest sites

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Gu, Lianhong; Huang, Ni; Black, T. Andrew; Wang, Li; Niu, Zheng

    2015-11-23

    Soil respiration (Rs), an important component of the global carbon cycle, can be estimated using remotely sensed data, but the accuracy of this technique has not been thoroughly investigated. In this article, we proposed a methodology for the remote estimation of annual Rs at two contrasting FLUXNET forest sites (a deciduous broadleaf forest and an evergreen needleleaf forest).

  2. Benchmarking the x-ray phase contrast imaging for ICF DT ice characterization using roughened surrogates

    SciTech Connect (OSTI)

    Dewald, E; Kozioziemski, B; Moody, J; Koch, J; Mapoles, E; Montesanti, R; Youngblood, K; Letts, S; Nikroo, A; Sater, J; Atherton, J

    2008-06-26

    We use x-ray phase contrast imaging to characterize the inner surface roughness of DT ice layers in capsules planned for future ignition experiments. It is therefore important to quantify how well the x-ray data correlates with the actual ice roughness. We benchmarked the accuracy of our system using surrogates with fabricated roughness characterized with high precision standard techniques. Cylindrical artifacts with azimuthally uniform sinusoidal perturbations with 100 um period and 1 um amplitude demonstrated 0.02 um accuracy limited by the resolution of the imager and the source size of our phase contrast system. Spherical surrogates with random roughness close to that required for the DT ice for a successful ignition experiment were used to correlate the actual surface roughness to that obtained from the x-ray measurements. When comparing average power spectra of individual measurements, the accuracy mode number limits of the x-ray phase contrast system benchmarked against surface characterization performed by Atomic Force Microscopy are 60 and 90 for surrogates smoother and rougher than the required roughness for the ice. These agreement mode number limits are >100 when comparing matching individual measurements. We will discuss the implications for interpreting DT ice roughness data derived from phase-contrast x-ray imaging.

  3. Multi-contrast 3D X-ray imaging of porous and composite materials

    SciTech Connect (OSTI)

    Sarapata, Adrian; Herzen, Julia; Ruiz-Yaniz, Maite; Zanette, Irene; Rack, Alexander; Pfeiffer, Franz

    2015-04-13

    Grating-based X-ray computed tomography allows for simultaneous and nondestructive determination of the full X-ray complex index of refraction and the scattering coefficient distribution inside an object in three dimensions. Its multi-contrast capabilities combined with a high resolution of a few micrometers make it a suitable tool for assessing multiple phases inside porous and composite materials such as concrete. Here, we present quantitative results of a proof-of-principle experiment performed on a concrete sample. Thanks to the complementarity of the contrast channels, more concrete phases could be distinguished than in conventional attenuation-based imaging. The phase-contrast reconstruction shows high contrast between the hardened cement paste and the aggregates and thus allows easy 3D segmentation. Thanks to the dark-field image, micro-cracks inside the coarse aggregates are visible. We believe that these results are extremely interesting in the field of porous and composite materials studies because of unique information provided by grating interferometry in a non-destructive way.

  4. Grating-based phase contrast tomosynthesis imaging: Proof-of-concept experimental studies

    SciTech Connect (OSTI)

    Li, Ke; Ge, Yongshuai; Garrett, John; Bevins, Nicholas; Zambelli, Joseph; Chen, Guang-Hong

    2014-01-15

    Purpose: This paper concerns the feasibility of x-ray differential phase contrast (DPC) tomosynthesis imaging using a grating-based DPC benchtop experimental system, which is equipped with a commercial digital flat-panel detector and a medical-grade rotating-anode x-ray tube. An extensive system characterization was performed to quantify its imaging performance. Methods: The major components of the benchtop system include a diagnostic x-ray tube with a 1.0 mm nominal focal spot size, a flat-panel detector with 96 ?m pixel pitch, a sample stage that rotates within a limited angular span of 30, and a Talbot-Lau interferometer with three x-ray gratings. A total of 21 projection views acquired with 3 increments were used to reconstruct three sets of tomosynthetic image volumes, including the conventional absorption contrast tomosynthesis image volume (AC-tomo) reconstructed using the filtered-backprojection (FBP) algorithm with the ramp kernel, the phase contrast tomosynthesis image volume (PC-tomo) reconstructed using FBP with a Hilbert kernel, and the differential phase contrast tomosynthesis image volume (DPC-tomo) reconstructed using the shift-and-add algorithm. Three inhouse physical phantoms containing tissue-surrogate materials were used to characterize the signal linearity, the signal difference-to-noise ratio (SDNR), the three-dimensional noise power spectrum (3D NPS), and the through-plane artifact spread function (ASF). Results: While DPC-tomo highlights edges and interfaces in the image object, PC-tomo removes the differential nature of the DPC projection data and its pixel values are linearly related to the decrement of the real part of the x-ray refractive index. The SDNR values of polyoxymethylene in water and polystyrene in oil are 1.5 and 1.0, respectively, in AC-tomo, and the values were improved to 3.0 and 2.0, respectively, in PC-tomo. PC-tomo and AC-tomo demonstrate equivalent ASF, but their noise characteristics quantified by the 3D NPS were

  5. Deploying web-based visual exploration tools on the grid (Journal...

    Office of Scientific and Technical Information (OSTI)

    Journal Article: Deploying web-based visual exploration tools on the grid Citation Details In-Document Search Title: Deploying web-based visual exploration tools on the grid We ...

  6. Deploying web-based visual exploration tools on the grid (Journal...

    Office of Scientific and Technical Information (OSTI)

    Journal Article: Deploying web-based visual exploration tools on the grid Citation Details In-Document Search Title: Deploying web-based visual exploration tools on the grid You ...

  7. Li electrodeposition dynamics visualized in-situ via a TEM liquid...

    Office of Scientific and Technical Information (OSTI)

    visualized in-situ via a TEM liquid cell. Citation Details In-Document Search Title: Li electrodeposition dynamics visualized in-situ via a TEM liquid cell. Abstract not provided. ...

  8. Jefferson Lab Dec. 9 Science Lecture Discusses How Visual Illusions Trick

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    the Mind | Jefferson Lab Dec. 9 Science Lecture Discusses How Visual Illusions Trick the Mind Jefferson Lab Dec. 9 Science Lecture Discusses How Visual Illusions Trick the Mind NEWPORT NEWS, Va., Nov. 4, 2009 - Jefferson Lab will host an illuminating and educational presentation on Wednesday, Dec. 9, titled How the Mind Tricks Us: Visualizations and Visual Illusions with Dr. Eric Mazur, Harvard University. Mazur is the Balkanski Professor of Physics and Applied Physics at Harvard University.

  9. Visualization tools for comprehensive test ban treaty research

    SciTech Connect (OSTI)

    Edwards, T.L.; Harris, J.M.; Simons, R.W.

    1997-08-01

    This paper focuses on tools used in Data Visualization efforts at Sandia National Laboratories under the Department of Energy CTBT R&D program. These tools provide interactive techniques for the examination and interpretation of scientific data, and can be used for many types of CTBT research and development projects. We will discuss the benefits and drawbacks of using the tools to display and analyze CTBT scientific data. While the tools may be used for everyday applications, our discussion will focus on the use of these tools for visualization of data used in research and verification of new theories. Our examples focus on uses with seismic data, but the tools may also be used for other types of data sets. 5 refs., 6 figs., 1 tab.

  10. New techniques in 3D scalar and vector field visualization

    SciTech Connect (OSTI)

    Max, N.; Crawfis, R.; Becker, B.

    1993-05-05

    At Lawrence Livermore National Laboratory (LLNL) we have recently developed several techniques for volume visualization of scalar and vector fields, all of which use back-to-front compositing. The first renders volume density clouds by compositing polyhedral volume cells or their faces. The second is a ``splatting`` scheme which composites textures used to reconstruct the scalar or vector fields. One version calculates the necessary texture values in software, and another takes advantage of hardware texture mapping. The next technique renders contour surface polygons using semi-transparent textures, which adjust appropriately when the surfaces deform in a flow, or change topology. The final one renders the ``flow volume`` of smoke or dye tracer swept out by a fluid flowing through a small generating polygon. All of these techniques are applied to a climate model data set, to visualize cloud density and wind velocity.

  11. Visually Relating Gene Expression and in vivo DNA Binding Data

    SciTech Connect (OSTI)

    Huang, Min-Yu; Mackey, Lester; Ker?; nen, Soile V. E.; Weber, Gunther H.; Jordan, Michael I.; Knowles, David W.; Biggin, Mark D.; Hamann, Bernd

    2011-09-20

    Gene expression and in vivo DNA binding data provide important information for understanding gene regulatory networks: in vivo DNA binding data indicate genomic regions where transcription factors are bound, and expression data show the output resulting from this binding. Thus, there must be functional relationships between these two types of data. While visualization and data analysis tools exist for each data type alone, there is a lack of tools that can easily explore the relationship between them. We propose an approach that uses the average expression driven by multiple of ciscontrol regions to visually relate gene expression and in vivo DNA binding data. We demonstrate the utility of this tool with examples from the network controlling early Drosophila development. The results obtained support the idea that the level of occupancy of a transcription factor on DNA strongly determines the degree to which the factor regulates a target gene, and in some cases also controls whether the regulation is positive or negative.

  12. A Visual Analytics Approach for Correlation, Classification, and Regression Analysis

    SciTech Connect (OSTI)

    Steed, Chad A; SwanII, J. Edward; Fitzpatrick, Patrick J.; Jankun-Kelly, T.J.

    2012-02-01

    New approaches that combine the strengths of humans and machines are necessary to equip analysts with the proper tools for exploring today's increasing complex, multivariate data sets. In this paper, a novel visual data mining framework, called the Multidimensional Data eXplorer (MDX), is described that addresses the challenges of today's data by combining automated statistical analytics with a highly interactive parallel coordinates based canvas. In addition to several intuitive interaction capabilities, this framework offers a rich set of graphical statistical indicators, interactive regression analysis, visual correlation mining, automated axis arrangements and filtering, and data classification techniques. The current work provides a detailed description of the system as well as a discussion of key design aspects and critical feedback from domain experts.

  13. Big Data Visual Analytics for Exploratory Earth System Simulation Analysis

    SciTech Connect (OSTI)

    Steed, Chad A.; Ricciuto, Daniel M.; Shipman, Galen M.; Smith, Brian E.; Thornton, Peter E.; Wang, Dali; Shi, Xiaoying; Williams, Dean N.

    2013-12-01

    Rapid increases in high performance computing are feeding the development of larger and more complex data sets in climate research, which sets the stage for so-called big data analysis challenges. However, conventional climate analysis techniques are inadequate in dealing with the complexities of today s data. In this paper, we describe and demonstrate a visual analytics system, called the Exploratory Data analysis ENvironment (EDEN), with specific application to the analysis of complex earth system simulation data sets. EDEN represents the type of interactive visual analysis tools that are necessary to transform data into insight, thereby improving critical comprehension of earth system processes. In addition to providing an overview of EDEN, we describe real-world studies using both point ensembles and global Community Land Model Version 4 (CLM4) simulations.

  14. Using Visual Analytics to Maintain Situation Awareness in Astrophysics

    SciTech Connect (OSTI)

    Aragon, Cecilia R.; Poon, Sarah S.; Aldering, Gregory S.; Thomas, Rollin C.; Quimby, Robert

    2008-07-01

    We present a novel collaborative visual analytics application for cognitively overloaded users in the astrophysics domain. The system was developed for scientists needing to analyze heterogeneous, complex data under time pressure, and then make predictions and time-critical decisions rapidly and correctly under a constant influx of changing data. The Sunfall Data Taking system utilizes severalnovel visualization and analysis techniques to enable a team of geographically distributed domain specialists to effectively and remotely maneuver a custom-built instrument under challenging operational conditions. Sunfall Data Taking has been in use for over eighteen months by a major international astrophysics collaboration (the largest data volume supernova search currently in operation), and has substantially improved the operational efficiency of its users. We describe the system design process by an interdisciplinary team, the system architecture, and the results of an informal usability evaluation of the production system by domain experts in the context of Endsley?s three levels of situation awareness.

  15. Visual Modeling for Aqua Ventus I off Monhegan Island, ME

    SciTech Connect (OSTI)

    Hanna, Luke A.; Whiting, Jonathan M.; Copping, Andrea E.

    2013-11-27

    To assist the University of Maine in demonstrating a clear pathway to project completion, PNNL has developed visualization models of the Aqua Ventus I project that accurately depict the Aqua Ventus I turbines from various points on Monhegain Island, ME and the surrounding area. With a hub height of 100 meters, the Aqua Ventus I turbines are large and may be seen from many areas on Monhegan Island, potentially disrupting important viewsheds. By developing these visualization models, which consist of actual photographs taken from Monhegan Island and the surrounding area with the Aqua Ventus I turbines superimposed within each photograph, PNNL intends to support the project’s siting and permitting process by providing the Monhegan Island community and various other stakeholders with a probable glimpse of how the Aqua Ventus I project will appear.

  16. Computerized fluid movement mapping and 3-D visualization

    SciTech Connect (OSTI)

    Al-Awami, A.A.; Poore, J.W.; Sizer, J.P.

    1995-11-01

    Most of the fieldwide fluid movement monitoring techniques under utilize available computer resources. This paper discusses an approach reservoir management engineers use to monitor fluid movement in reservoirs with a multitude of wells. This approach allows the engineer to maintain up-to-date fluid movement studies and incorporate the latest information from data acquisition programs into the day to day decision-making process. The approach uses several in-house database applications and makes extensive use of commercially available software products to generate and visualize cross-sections, maps, and 3-d models. This paper reviews the computerized procedures to create cross-sections that display the current fluid contacts overlaying the lithology. It also reviews the mapping procedures nd presents examples of water encroachment maps by layer at specific time periods. 3-D geologic modeling software greatly enhances the visualization of the reservoir. This software can also be used to interpret and model fluid movement, given the appropriate engineering constraints.

  17. Visual agent-based model development with repast simphony.

    SciTech Connect (OSTI)

    North, M. J.; Tatara, E.; Collier, N. T.; Ozik, J.; Decision and Information Sciences; Univ. of Chicago; PantaRei Corp.

    2007-01-01

    Repast is a widely used, free, and open-source agent-based modeling and simulation toolkit. Three Repast platforms are currently available, each of which has the same core features but a different environment for these features. Repast Simphony (Repast S) extends the Repast portfolio by offering a new approach to simulation development and execution. This paper presents a model of physical infrastructure network interdependency as an introductory tutorial and illustration of the visual modeling capabilities of Repast S.

  18. Visualization of Multivariate Data --- Inventor: Eliot Feibush | Princeton

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Plasma Physics Lab Visualization of Multivariate Data --- Inventor: Eliot Feibush The invention is a process for displaying multivariate data while eliminating ambiguity. It clarifies and shows more dimensions of data than existing methods such as scatter plots and icon plots where multiple samples can occupy the same location in a drawing. The display technique is not affected by the sequential order of the data. The invented process solves these problems by mapping the sample totals of

  19. Texture splats for 3D vector and scalar field visualization

    SciTech Connect (OSTI)

    Crawfis, R.A.; Max, N.

    1993-04-06

    Volume Visualization is becoming an important tool for understanding large 3D datasets. A popular technique for volume rendering is known as splatting. With new hardware architectures offering substantial improvements in the performance of rendering texture mapped objects, we present textured splats. An ideal reconstruction function for 3D signals is developed which can be used as a texture map for a splat. Extensions to the basic splatting technique are then developed to additionally represent vector fields.

  20. UNIVERSITY OF CALIFORNIA The Future of Large Scale Visual Data

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    CALIFORNIA The Future of Large Scale Visual Data Analysis Joint Facilities User Forum on Data Intensive Computing Oakland, CA E. Wes Bethel Lawrence Berkeley National Laboratory 16 June 2014 16 June 2014 The World that Was: Computational Architectures * Machine architectures - Single CPU, single core - Vector, then single-core MPPs - "Large" SMP platforms - Relatively well balanced: memory, FLOPS,I/O 16 June 2014 The World that Was: Software Architecture * Data Analysis and

  1. Eliot Feibush leads new Princeton consortium to visualize Big Data |

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Princeton Plasma Physics Lab Eliot Feibush leads new Princeton consortium to visualize Big Data By John Greenwald April 22, 2015 Tweet Widget Google Plus One Share on Facebook Eliot Feibush (Photo by Elle Starkman/PPPL Office of Communications) Eliot Feibush Gallery: Cross section of a tokamak plasma with red and blue colors showing direction and structure of plasma flow. (Photo by PPPL) Cross section of a tokamak plasma with red and blue colors showing direction and structure of plasma

  2. Visualizing and improving the robustness of phase retrieval algorithms

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Tripathi, Ashish; Leyffer, Sven; Munson, Todd; Wild, Stefan M.

    2015-06-01

    Coherent x-ray diffractive imaging is a novel imaging technique that utilizes phase retrieval and nonlinear optimization methods to image matter at nanometer scales. We explore how the convergence properties of a popular phase retrieval algorithm, Fienup's HIO, behave by introducing a reduced dimensionality problem allowing us to visualize and quantify convergence to local minima and the globally optimal solution. We then introduce generalizations of HIO that improve upon the original algorithm's ability to converge to the globally optimal solution.

  3. IdentityMap Visualization of the Super Identity Model

    SciTech Connect (OSTI)

    2015-04-15

    The Super Identity Model is a collaboration with six United Kingdom universities to develop use cases used to piece together a person's identity across biological, cyber, psychological, and biographical domains. PNNL visualized the model in a web-based application called IdentityMap. This is the first step in a promising new field of research. Interested future collaborators are welcome to find out more by emailing superid@pnnl.gov.

  4. Scientific Visualization: The Modern Oscilloscope for "Seeing the Unseeable" (LBNL Summer Lecture Series)

    ScienceCinema (OSTI)

    Bethel, E Wes

    2011-04-28

    Summer Lecture Series 2008: Scientific visualization transforms abstract data into readily comprehensible images, provide a vehicle for "seeing the unseeable," and play a central role in both experimental and computational sciences. Wes Bethel, who heads the Scientific Visualization Group in the Computational Research Division, presents an overview of visualization and computer graphics, current research challenges, and future directions for the field.

  5. ASCI visualization tool evaluation, Version 2.0

    SciTech Connect (OSTI)

    Kegelmeyer, P.

    1997-04-01

    The charter of the ASCI Visualization Common Tools subgroup was to investigate and evaluate 3D scientific visualization tools. As part of that effort, a Tri-Lab evaluation effort was launched in February of 1996. The first step was to agree on a thoroughly documented list of 32 features against which all tool candidates would be evaluated. These evaluation criteria were both gleaned from a user survey and determined from informed extrapolation into the future, particularly as concerns the 3D nature and extremely large size of ASCI data sets. The second step was to winnow a field of 41 candidate tools down to 11. The selection principle was to be as inclusive as practical, retaining every tool that seemed to hold any promise of fulfilling all of ASCI`s visualization needs. These 11 tools were then closely investigated by volunteer evaluators distributed across LANL, LLNL, and SNL. This report contains the results of those evaluations, as well as a discussion of the evaluation philosophy and criteria.

  6. GWVis: A Tool for Comparative Ground-Water Data Visualization

    SciTech Connect (OSTI)

    Best, Daniel M.; Lewis, Robert R.

    2010-11-01

    The Ground-Water Visualization application (GWVis) presents ground-water data visually in order to educate the public on ground-water issues. It is also intended for presentations to government and other funding agencies. Current three dimensional models of ground-water are overly complex, while the two dimensional representations (i.e., on paper) are neither comprehensive, nor engaging. At present, GWVis operates on water head elevation data over a given time span, together with a matching (fixed) underlying geography. Two elevation scenarios are compared with each other, typically a control data set (actual field data) and a simulation. Scenario comparison can be animated for the time span provided. We developed GWVis using the Python programming language, associated libraries, and pyOpenGL extension packages to improve performance and control of attributes of the mode (such as color, positioning, scale, and interpolation). GWVis bridges the gap between two dimensional and dynamic three dimensional research visualizations by providing an intuitive, interactive design that allows participants to view the model from different perspectives and to infer information about scenarios. By incorporating scientific data in an environment that can be easily understood, GWVis allows the information to be presented to a large audience base.

  7. SU-E-J-214: MR Protocol Development to Visualize Sirius MRI Markers in Prostate Brachytherapy Patients for MR-Based Post-Implant Dosimetry

    SciTech Connect (OSTI)

    Lim, T; Wang, J; Frank, S; Stafford, R; Bruno, T; Bathala, T; Mahmood, U; Pugh, T; Ibbott, G; Kudchadker, R

    2015-06-15

    Purpose: The current CT-based post-implant dosimetry allows precise seed localization but limited anatomical delineation. Switching to MR-based post-implant dosimetry is confounded by imprecise seed localization. One approach is to place positive-contrast markers (Sirius) adjacent to the negative-contrast seeds. This patient study aims to assess the utility of a 3D fast spoiled gradient-recalled echo (FSPGR) sequence to visualize Sirius markers for post-implant dosimetry. Methods: MRI images were acquired in prostate implant patients (n=10) on Day 0 (day-of-implant) and Day 30. The post-implant MR protocol consisted of 3D T2-weighted fast-spin-echo (FSE), T2-weighted 2D-FSE (axial) and T1-weighted 2D-FSE (axial/sagittal/coronal). We incorporated a 3D-FSPGR sequence into the post-implant MR protocol to visualize the Sirius markers. Patients were scanned with different number-of-excitations (6, 8, 10), field-of-view (10cm, 14cm, 18cm), slice thickness (1mm, 0.8mm), flip angle (14 degrees, 20 degrees), bandwidth (122.070 Hz/pixel, 325.508 Hz/pixel, 390.625 Hz/pixel), phase encoding steps (160, 192, 224, 256), frequency-encoding direction (right/left, anterior/posterior), echo-time type (minimum-full, out-of-phase), field strength (1.5T, 3T), contrast (with, without), scanner vendor (Siemens, GE), coil (endorectal-coil only, endorectal-and-torso-coil, torsocoil only), endorectal-coil filling (30cc, 50cc) and endorectal-coil filling type (air, perfluorocarbon [PFC]). For post-implant dosimetric evaluation with greater anatomical detail, 3D-FSE images were fused with 3D-FSPGR images. For comparison with CT-based post-implant dosimetry, CT images were fused with 3D-FSPGR images. Results: The 3D-FSPGR sequence facilitated visualization of markers in patients. Marker visualization helped distinguish signal voids as seeds versus needle tracks for more definitive MR-based post-implant dosimetry. On the CT-MR fused images, the distance between the seed on CT to MR images was 3

  8. High Contrast Ramsey Fringes with Coherent-Population-Trapping Pulses in a Double Lambda Atomic System

    SciTech Connect (OSTI)

    Zanon, T.; Guerandel, S.; Clercq, E. de; Holleville, D.; Dimarcq, N.; Clairon, A. [SYRTE, Observatoire de Paris, 61 Avenue de l'Observatoire, 75014 Paris (France)

    2005-05-20

    We report the observation of Raman-Ramsey fringes using a double lambda scheme creating coherent population trapping in an atomic ensemble combined with pulsed optical radiations. The observation was made in a Cs vapor mixed with N{sub 2} buffer gas in a closed cell. The double lambda scheme is created with lin perpendicular lin polarized laser beams leading to higher contrast than the usual simple lambda scheme. The pulsed trapping technique leads to narrow fringe widths scaling as 1/(2T) with high contrasts which are no longer limited by the saturation effect. This technique operates in a different way from the classical Ramsey sequence: the signal is done by applying a long trapping pulse to prepare the atomic state superposition, and fringe detection is accomplished by optical transmission during a short second trapping pulse without any perturbation of the dark state.

  9. X-ray phase-contrast imaging with an Inverse Compton Scattering source

    SciTech Connect (OSTI)

    Endrizzi, M.; Carpinelli, M.; Oliva, P.; Golosio, B.; Delogu, P.; Stefanini, A.; Gureyev, T. E.; Bottigli, U.

    2010-07-23

    Single-shot in-line phase-contrast imaging with the Inverse Compton Scattering X-ray source available at ATF (Accelerator Test Facility) at Brookhaven National Laboratory is experimentally demonstrated. Phase-contrast images of polymer wires are obtained with a single X-ray pulse whose time length is about 1 picosecond. The edge-enhancement effect is clearly visible in the images and simulations show a quantitative agreement with experimental data. A phase-retrieval step in the image processing leads to a accurate estimation of the projected thickness of our samples. Finally, a single-shot image of a wasp is presented as an example of a biological sample.

  10. Improved algorithm for processing grating-based phase contrast interferometry image sets

    SciTech Connect (OSTI)

    Marathe, Shashidhara Assoufid, Lahsen Xiao, Xianghui; Ham, Kyungmin; Johnson, Warren W.; Butler, Leslie G.

    2014-01-15

    Grating-based X-ray and neutron interferometry tomography using phase-stepping methods generates large data sets. An improved algorithm is presented for solving for the parameters to calculate transmissions, differential phase contrast, and dark-field images. The method takes advantage of the vectorization inherent in high-level languages such as Mathematica and MATLAB and can solve a 16 × 1k × 1k data set in less than a second. In addition, the algorithm can function with partial data sets. This is demonstrated with processing of a 16-step grating data set with partial use of the original data chosen without any restriction. Also, we have calculated the reduced chi-square for the fit and notice the effect of grating support structural elements upon the differential phase contrast image and have explored expanded basis set representations to mitigate the impact.

  11. Ultrasound contrast agent imaging: Real-time imaging of the superharmonics

    SciTech Connect (OSTI)

    Peruzzini, D.; Viti, J.; Tortoli, P.; Verweij, M. D.; Jong, N. de; Vos, H. J.

    2015-10-28

    Currently, in medical ultrasound contrast agent (UCA) imaging the second harmonic scattering of the microbubbles is regularly used. This scattering is in competition with the signal that is caused by nonlinear wave propagation in tissue. It was reported that UCA imaging based on the third or higher harmonics, i.e. “superharmonic” imaging, shows better contrast. However, the superharmonic scattering has a lower signal level compared to e.g. second harmonic signals. This study investigates the contrast-to-tissue ratio (CTR) and signal to noise ratio (SNR) of superharmonic UCA scattering in a tissue/vessel mimicking phantom using a real-time clinical scanner. Numerical simulations were performed to estimate the level of harmonics generated by the microbubbles. Data were acquired with a custom built dual-frequency cardiac phased array probe. Fundamental real-time images were produced while beam formed radiofrequency (RF) data was stored for further offline processing. The phantom consisted of a cavity filled with UCA surrounded by tissue mimicking material. The acoustic pressure in the cavity of the phantom was 110 kPa (MI = 0.11) ensuring non-destructivity of UCA. After processing of the acquired data from the phantom, the UCA-filled cavity could be clearly observed in the images, while tissue signals were suppressed at or below the noise floor. The measured CTR values were 36 dB, >38 dB, and >32 dB, for the second, third, and fourth harmonic respectively, which were in agreement with those reported earlier for preliminary contrast superharmonic imaging. The single frame SNR values (in which ‘signal’ denotes the signal level from the UCA area) were 23 dB, 18 dB, and 11 dB, respectively. This indicates that noise, and not the tissue signal, is the limiting factor for the UCA detection when using the superharmonics in nondestructive mode.

  12. Defocused differential interference contrast microscopy imaging of single plasmonic anisotropic nanoparticles

    SciTech Connect (OSTI)

    Ha, Ji Won; Fang, Ning

    2014-01-01

    We present the defocused differential interference contrast (DIC) imaging of gold nanorods. We found that the scattered light and the defocus aberration play an important role in the formation of orientation-dependent DIC image patterns of a gold nanorod. Interestingly, the scattered light from a gold nanorod aligned closer to the polarization directions enables us to directly resolve its spatial orientation under a defocused DIC microscope.

  13. Remote sensing-based estimation of annual soil respiration at two contrasting forest sites

    SciTech Connect (OSTI)

    Gu, Lianhong; Huang, Ni; Black, T. Andrew; Wang, Li; Niu, Zheng

    2015-11-23

    Soil respiration (Rs), an important component of the global carbon cycle, can be estimated using remotely sensed data, but the accuracy of this technique has not been thoroughly investigated. In this article, we proposed a methodology for the remote estimation of annual Rs at two contrasting FLUXNET forest sites (a deciduous broadleaf forest and an evergreen needleleaf forest).

  14. Specular Reflectivity and Hot-Electron Generation in High-Contrast Relativistic Laser-Plasma Interactions

    SciTech Connect (OSTI)

    Kemp, Gregory Elijah

    2013-01-01

    Ultra-intense laser (> 1018 W/cm2) interactions with matter are capable of producing relativistic electrons which have a variety of applications in state-of-the-art scientific and medical research conducted at universities and national laboratories across the world. Control of various aspects of these hot-electron distributions is highly desired to optimize a particular outcome. Hot-electron generation in low-contrast interactions, where significant amounts of under-dense pre-plasma are present, can be plagued by highly non-linear relativistic laser-plasma instabilities and quasi-static magnetic field generation, often resulting in less than desirable and predictable electron source characteristics. High-contrast interactions offer more controlled interactions but often at the cost of overall lower coupling and increased sensitivity to initial target conditions. An experiment studying the differences in hot-electron generation between high and low-contrast pulse interactions with solid density targets was performed on the Titan laser platform at the Jupiter Laser Facility at Lawrence Livermore National Laboratory in Livermore, CA. To date, these hot-electrons generated in the laboratory are not directly observable at the source of the interaction. Instead, indirect studies are performed using state-of-the-art simulations, constrained by the various experimental measurements. These measurements, more-often-than-not, rely on secondary processes generated by the transport of these electrons through the solid density materials which can susceptible to a variety instabilities and target material/geometry effects. Although often neglected in these types of studies, the specularly reflected light can provide invaluable insight as it is directly influenced by the interaction. In this thesis, I address the use of (personally obtained) experimental specular reflectivity measurements to indirectly study hot-electron generation in the context of high-contrast, relativistic

  15. Efficient linear phase contrast in scanning transmission electron microscopy with matched illumination and detector interferometry

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Ophus, Colin; Ciston, Jim; Pierce, Jordan; Harvey, Tyler R.; Chess, Jordan; McMorran, Benjamin J.; Czarnik, Cory; Rose, Harald H.; Ercius, Peter

    2016-02-29

    The ability to image light elements in soft matter at atomic resolution enables unprecedented insight into the structure and properties of molecular heterostructures and beam-sensitive nanomaterials. In this study, we introduce a scanning transmission electron microscopy technique combining a pre-specimen phase plate designed to produce a probe with structured phase with a high-speed direct electron detector to generate nearly linear contrast images with high efficiency. We demonstrate this method by using both experiment and simulation to simultaneously image the atomic-scale structure of weakly scattering amorphous carbon and strongly scattering gold nanoparticles. Our method demonstrates strong contrast for both materials, makingmore » it a promising candidate for structural determination of heterogeneous soft/hard matter samples even at low electron doses comparable to traditional phase-contrast transmission electron microscopy. Ultimately, simulated images demonstrate the extension of this technique to the challenging problem of structural determination of biological material at the surface of inorganic crystals.« less

  16. Histopathological Alterations after Single Epidural Injection of Ropivacaine, Methylprednizolone Acetate, or Contrast Material in Swine

    SciTech Connect (OSTI)

    Kitsou, Maria-Chrysanthi; Kostopanagiotou, Georgia; Kalimeris, Konstantinos; Vlachodimitropoulos, Demetrios; Soultanis, Konstantinos; Batistaki, Chrysanthi; Kelekis, Alexis

    2011-12-15

    Purpose: The consequences from the injection of different types of drugs in the epidural space remains unknown. Increasing evidence suggests that localized inflammation, fibrosis, and arachnoiditis can complicate sequential epidural blockades, or even epidural contrast injection. We investigate the in vivo effect of epidural injections in the epidural space in an animal model. Materials and Methods: A group of ten male adult pigs, five punctures to each at distinct vertebral interspaces under general anesthesia, were examined, testing different drugs, used regularly in the epidural space (iopamidol, methylprednisolone acetate, ropivacaine). Each site was marked with a percutaneous hook wire marker. Histological analysis of the epidural space, the meninges, and the underlying spinal cord of the punctured sites along with staining for caspase-3 followed 20 days later. Results: The epidural space did not manifest adhesions or any other pathology, and the outer surface of the dura was not impaired in any specimen. The group that had the contrast media injection showed a higher inflammation response compared to the other groups (P = 0.001). Positive staining for caspase-3 was limited to <5% of neurons with all substances used. Conclusion: No proof of arachnoiditis and/or fibrosis was noted in the epidural space with the use of the above-described drugs. A higher inflammation rate was noted with the use of contrast media.

  17. Imaging the Solar Cell P-N Junction and Depletion Region Using Secondary Electron Contrast

    SciTech Connect (OSTI)

    Heath, J. T.; Jiang, C. S.; Al-Jassim, M. M.

    2011-01-01

    We report on secondary electron (SE) images of cross-sectioned multicrystalline Si and GaAs/GaInP solar cell devices, focusing on quantifying the relationship between the apparent n{sup +}-p contrast and characteristic electronic features of the device. These samples allow us to compare the SE signal from devices which have very different physical characteristics: differing materials, diffused junction versus abrupt junction, heterojunction versus homojunction. Despite these differences, we find that the SE image contrast for both types of sample, and as a function of reverse bias across the diode, closely agrees with PC1D simulations of the bulk electrostatic potential in the device, accurately yielding the depletion edge and width. A spatial derivative of the SE data shows a local maximum at the metallurgical junction. Such data are valuable, for example, in studying the conformity of a diffused junction to the textured surface topography. These data also extend our understanding of the origin of the SE contrast.

  18. Visual Empirical Region of Influence (VERI) Pattern Recognition Algorithms

    SciTech Connect (OSTI)

    2002-05-01

    We developed new pattern recognition (PR) algorithms based on a human visual perception model. We named these algorithms Visual Empirical Region of Influence (VERI) algorithms. To compare the new algorithm's effectiveness against othe PR algorithms, we benchmarked their clustering capabilities with a standard set of two-dimensional data that is well known in the PR community. The VERI algorithm succeeded in clustering all the data correctly. No existing algorithm had previously clustered all the pattens in the data set successfully. The commands to execute VERI algorithms are quite difficult to master when executed from a DOS command line. The algorithm requires several parameters to operate correctly. From our own experiences we realized that if we wanted to provide a new data analysis tool to the PR community we would have to provide a new data analysis tool to the PR community we would have to make the tool powerful, yet easy and intuitive to use. That was our motivation for developing graphical user interfaces (GUI's) to the VERI algorithms. We developed GUI's to control the VERI algorithm in a single pass mode and in an optimization mode. We also developed a visualization technique that allows users to graphically animate and visually inspect multi-dimensional data after it has been classified by the VERI algorithms. The visualization technique that allows users to graphically animate and visually inspect multi-dimensional data after it has been classified by the VERI algorithms. The visualization package is integrated into the single pass interface. Both the single pass interface and optimization interface are part of the PR software package we have developed and make available to other users. The single pass mode only finds PR results for the sets of features in the data set that are manually requested by the user. The optimization model uses a brute force method of searching through the cominations of features in a data set for features that produce the

  19. Visual Empirical Region of Influence (VERI) Pattern Recognition Algorithms

    Energy Science and Technology Software Center (OSTI)

    2002-05-01

    We developed new pattern recognition (PR) algorithms based on a human visual perception model. We named these algorithms Visual Empirical Region of Influence (VERI) algorithms. To compare the new algorithm's effectiveness against othe PR algorithms, we benchmarked their clustering capabilities with a standard set of two-dimensional data that is well known in the PR community. The VERI algorithm succeeded in clustering all the data correctly. No existing algorithm had previously clustered all the pattens inmore » the data set successfully. The commands to execute VERI algorithms are quite difficult to master when executed from a DOS command line. The algorithm requires several parameters to operate correctly. From our own experiences we realized that if we wanted to provide a new data analysis tool to the PR community we would have to provide a new data analysis tool to the PR community we would have to make the tool powerful, yet easy and intuitive to use. That was our motivation for developing graphical user interfaces (GUI's) to the VERI algorithms. We developed GUI's to control the VERI algorithm in a single pass mode and in an optimization mode. We also developed a visualization technique that allows users to graphically animate and visually inspect multi-dimensional data after it has been classified by the VERI algorithms. The visualization technique that allows users to graphically animate and visually inspect multi-dimensional data after it has been classified by the VERI algorithms. The visualization package is integrated into the single pass interface. Both the single pass interface and optimization interface are part of the PR software package we have developed and make available to other users. The single pass mode only finds PR results for the sets of features in the data set that are manually requested by the user. The optimization model uses a brute force method of searching through the cominations of features in a data set for features that produce

  20. SU-E-I-58: Detecting Tumors with Extremely Low Contrast in CT Images

    SciTech Connect (OSTI)

    Sheng, K; Gou, S; Kupelian, P; Steiberg, M; Low, D

    2014-06-01

    Purpose: Tumors such as the prostate focal lesions and the brain metastases have extremely low CT contrast and MRI is usually used for target delineation. The target contours are propagated to the CT for treatment planning and patient positioning. We have employed an advanced denoising method eliminating the noise and allow magnification of subtle contrast of these focal lesions on CT. Methods: Five prostate and two brain metastasis patients with MRI T2, diffusion or dynamic contrast enhanced (DCE) images confirmed focal lesions were included. One brain patients had 5 metastases. A block matching 3D (BM3D) algorithm was adapted to reduce the noise of kVCT images used for treatment planning. The gray-level range of the resultant images was narrowed to magnify the tumor-normal tissue contrast. Results: For the prostate patients, denoised kVCT images showed focal regions at 5, 8,11-1, 2, and 8–10 oclock for the 5 patients, this is highly consistent to the radiologist confirmed focal lesions based on MRI at 5, 7, 11-1, 2 and 8–10 oclock in the axial plane. These CT focal regions matched well with the MRI focal lesions in the cranio-caudal position. The average increase in density compared to background prostate glands was 0.86%, which corresponds to ∼50% increase in cellularity and is lower than the average CT noise level of 2.4%. For the brain patients, denoised kVCT showed 5/6 metastases. The high CT-density region of a metastasis is 2-mm off from its corresponding elevated MRI perfusion center. Overall the detecting sensitivity was 91%. Conclusion: It has been preliminarily demonstrated that the higher tumor cellularity can be detected using kVCT. The low contrast-to-noise information requires advanced denoising to reveal. The finding is significant to radiotherapy by providing an additional tool to locate focal lesions for confirming MRI-CT registration and providing a highly accessible outcome assessment tool.

  1. High energy x-ray phase contrast CT using glancing-angle grating interferometers

    SciTech Connect (OSTI)

    Sarapata, A.; Stayman, J. W.; Siewerdsen, J. H.; Finkenthal, M.; Stutman, D.; Pfeiffer, F.

    2014-02-15

    Purpose: The authors present initial progress toward a clinically compatible x-ray phase contrast CT system, using glancing-angle x-ray grating interferometry to provide high contrast soft tissue images at estimated by computer simulation dose levels comparable to conventional absorption based CT. Methods: DPC-CT scans of a joint phantom and of soft tissues were performed in order to answer several important questions from a clinical setup point of view. A comparison between high and low fringe visibility systems is presented. The standard phase stepping method was compared with sliding window interlaced scanning. Using estimated dose values obtained with a Monte-Carlo code the authors studied the dependence of the phase image contrast on exposure time and dose. Results: Using a glancing angle interferometer at high x-ray energy (∼45 keV mean value) in combination with a conventional x-ray tube the authors achieved fringe visibility values of nearly 50%, never reported before. High fringe visibility is shown to be an indispensable parameter for a potential clinical scanner. Sliding window interlaced scanning proved to have higher SNRs and CNRs in a region of interest and to also be a crucial part of a low dose CT system. DPC-CT images of a soft tissue phantom at exposures in the range typical for absorption based CT of musculoskeletal extremities were obtained. Assuming a human knee as the CT target, good soft tissue phase contrast could be obtained at an estimated absorbed dose level around 8 mGy, similar to conventional CT. Conclusions: DPC-CT with glancing-angle interferometers provides improved soft tissue contrast over absorption CT even at clinically compatible dose levels (estimated by a Monte-Carlo computer simulation). Further steps in image processing, data reconstruction, and spectral matching could make the technique fully clinically compatible. Nevertheless, due to its increased scan time and complexity the technique should be thought of not as

  2. Visualization Gallery from the Computational Research Division at Lawrence Berkeley National Laboratory

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    This excellent collection of visualization vignettes highlights research work done by the LBNL/NERSC Visualization Group and its collaborators from 1993 to the present. Images lead to technical explanations and project details, helping users to branch out to other related sources. Titles of the projects provide clues both to the imaging focus of the research and the scientific discipline for which the visualizations are intended. Only a few of the many titles/images/projects are listed here: 1) Hybrid Parallelism for Volume Rendering at Large Scale Analysis of Laser Wakefield Particle Acceleration Data; 2) Visualization of Microearthquake Data from Enhanced Geothermal Systems; 3) PointCloudXplore: Visualization and Analysis of 3D Gene Expression Data; 4) Visualization of Quantum Monte-Carlo simulations; 5) Global Cloud Resolving Models; 6) Visualization of large-scale GFDL/NOAA climate simulations; 7) Direct Numerical Simulation of Turbulent Flame Quenching by Fine Water Droplets; 8) Visualization of Magneto-rotational instability and turbulent angular momentum transport; 9) Sunfall: Visual Analytics for Astrophysics; 10) Fast Contour Descriptor Algorithm for Supernova Image Classification; 11) Supernova Recognition Using Support Vector Machines; 12) High Performance Visualization - Query-Driven Network Traffic Analysis; 13) Visualization of Magneto-rotational instability and turbulent angular momentum transport; 14) Life Sciences: Cell Division of Caulobacter Crescentus; 15) Electron Cloud Simulations.

  3. Interactive, Internet Delivery of Visualization via Structured,Prerendered multiresolution Imagery

    SciTech Connect (OSTI)

    Bethel, E. Wes; Yoon, Ilmi; Chen, Jerry

    2007-10-25

    One of the fundamental problems in remote visualization --where I/O and data intensive visualization activities take place at acentrally located supercomputer center and resulting imagery is deliveredto a remotely located user -- is reduced interactivity resulting from thecombination of high network latency and relatively low network bandwidth.This research project has produced a novel approach for latency-tolerantdelivery of visualization and rendering results where client-side framerate display performance is independent of source dataset size, imagesize, visualization technique or rendering complexity. As such, it is asuitable solution for remote visualization image delivery for anyvisualization or rendering application that can generate image frames inan ordered fashion. This new capability is suitable for use in addressingmany of ASCR s remote visualization needs, particularly deployment atopen computing facilities to provide remote visualization capabilities toteams of scientific researchers.

  4. The second-order differential phase contrast and its retrieval for imaging with x-ray Talbot interferometry

    SciTech Connect (OSTI)

    Yang Yi; Tang Xiangyang

    2012-12-15

    Purpose: The x-ray differential phase contrast imaging implemented with the Talbot interferometry has recently been reported to be capable of providing tomographic images corresponding to attenuation-contrast, phase-contrast, and dark-field contrast, simultaneously, from a single set of projection data. The authors believe that, along with small-angle x-ray scattering, the second-order phase derivative {Phi}{sup Double-Prime }{sub s}(x) plays a role in the generation of dark-field contrast. In this paper, the authors derive the analytic formulae to characterize the contribution made by the second-order phase derivative to the dark-field contrast (namely, second-order differential phase contrast) and validate them via computer simulation study. By proposing a practical retrieval method, the authors investigate the potential of second-order differential phase contrast imaging for extensive applications. Methods: The theoretical derivation starts at assuming that the refractive index decrement of an object can be decomposed into {delta}={delta}{sub s}+{delta}{sub f}, where {delta}{sub f} corresponds to the object's fine structures and manifests itself in the dark-field contrast via small-angle scattering. Based on the paraxial Fresnel-Kirchhoff theory, the analytic formulae to characterize the contribution made by {delta}{sub s}, which corresponds to the object's smooth structures, to the dark-field contrast are derived. Through computer simulation with specially designed numerical phantoms, an x-ray differential phase contrast imaging system implemented with the Talbot interferometry is utilized to evaluate and validate the derived formulae. The same imaging system is also utilized to evaluate and verify the capability of the proposed method to retrieve the second-order differential phase contrast for imaging, as well as its robustness over the dimension of detector cell and the number of steps in grating shifting. Results: Both analytic formulae and computer

  5. Visual Data Exploration and Analysis - Report of the VisualizationBreakout Session at the 2003 SCaLeS Workshop - Volume II

    SciTech Connect (OSTI)

    Bethel, E. Wes; Frank, Randall; Fulcomer, Samuel; Hansen, Chuck; Joy, Ken; Kohl, Jim; Middleton, Don

    2004-01-12

    This document is the report from the Visualization breakoutsession at the SCaLeS (Science Case for Large-scale Simulation) workshopheld in 2003 in Bethesda, MD. The document presents current researchchallenges in visualization of large-scale scientific data.

  6. Basic visual observation skills training course: Appendix B. Final report

    SciTech Connect (OSTI)

    Toquam, J.L.; Morris, F.A.; Griggs, J.R.

    1995-06-01

    The purpose of the basic visual observation skills course is to help safeguards inspectors evaluate and improve their skills in making observations during inspections and in evaluating and interpreting this information. The first 12 hours of the course provide training in five skill areas: perception and recognition; attention to detail; memory; mental imaging, mapping, and modeling skills; and judgment and decision making. Following this training is an integrating exercise involving a simulated safeguards inspection. This report contains the in-class exercises in the five skill areas; pre- and post-course exercises in closure, hidden figures, map memory, and mental rotations; the final examination; a training evaluation form; and the integrating exercise.

  7. Semantic Interaction for Visual Analytics: Toward Coupling Cognition and Computation

    SciTech Connect (OSTI)

    Endert, Alexander

    2014-07-01

    The dissertation discussed in this article [1] was written in the midst of an era of digitization. The world is becoming increasingly instrumented with sensors, monitoring, and other methods for generating data describing social, physical, and natural phenomena. Thus, data exist with the potential of being analyzed to uncover, or discover, the phenomena from which it was created. However, as the analytic models leveraged to analyze these data continue to increase in complexity and computational capability, how can visualizations and user interaction methodologies adapt and evolve to continue to foster discovery and sensemaking?

  8. Your Data Analysis & Visualization Needs Scaling Your

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Scaling Your Science on Mira May 25, 2016 Joseph A. Insley 2 High Performance Visualization Resource: Cooley ¤ 126 nodes; each node has ¥ 2 -Intel Xeon Haswell 2.4 GHz 6-core processors ¥ NVIDIA Telsa K80 graphics processing unit (24GB) ¥ 384 GB of RAM ¤ Peak 223 TF (425 on Top500, Nov 2015) ¤ Aggregate RAM of 47 TB ¤ Aggregate GPU memory of~3TB ¤ Cross-Mounted file systems with Mira Data Representations: Volume Rendering ¤ Turn 2- and 3-dimensionsal datasets into 2D images ¤

  9. Visualizing MCNP Tally Segment Geometry and Coupling Results with ABAQUS

    SciTech Connect (OSTI)

    J. R. Parry; J. A. Galbraith

    2007-11-01

    The Advanced Graphite Creep test, AGC-1, is planned for irradiation in the Advanced Test Reactor (ATR) in support of the Next Generation Nuclear Plant program. The experiment requires very detailed neutronics and thermal hydraulics analyses to show compliance with programmatic and ATR safety requirements. The MCNP model used for the neutronics analysis required hundreds of tally regions to provide the desired detail. A method for visualizing the hundreds of tally region geometries and the tally region results in 3 dimensions has been created to support the AGC-1 irradiation. Additionally, a method was created which would allow ABAQUS to access the results directly for the thermal analysis of the AGC-1 experiment.

  10. A New Collaborative Tool for Visually Understanding National Health Indicators

    SciTech Connect (OSTI)

    Xu, Songhua; Jewell, Brian C; Steed, Chad A; Schryver, Jack C

    2012-01-01

    The authors propose a new online collaborative tool for visually understanding national health indicators, which facilitates the full spectrum of investigation of indicators, from an overview of all the correlation coefficients between variables, to investigation of subsets of selected variables, and to individual data element analysis. this tool is publicly accessible at http://cda.ornl.gov/heat/heatmap.html. In this paper, they discuss the key issues regarding the interface design and implementation. They also illustrate how to use their interface for analyzing the health indicator dataset by showing some key system views. In the end, they introduce and discuss some ongoing research efforts extending this work.

  11. Flow visualization study of the MOD-2 wind turbine wake

    SciTech Connect (OSTI)

    Liu H.T.; Waite, J.W.; Hiester, T.R.; Tacheron, P.H.; Srnsky, R.A.

    1983-06-01

    The specific objectives of the study reported were: to determine the geometry of the MOD-2 wind turbine wake in terms of wake height and width as a function of downstream distance under two conditions of atmospheric stability; to estimate the mean velocity deficit at several downstream stations in the turbine wake; and to investigate the behavior of the rotor-generated vortices, particularly their configuration and persistence. The background of the wake problem is briefly examined, including a discussion of the critical issues that the flow visualization study addresses. Experimental techniques and data analysis methods are described in detail. (LEW)

  12. T.Rex Visual Analytics for Transactional Exploration

    ScienceCinema (OSTI)

    None

    2014-07-16

    T.Rex is PNNL's visual analytics tool that specializes in tabular structured data, like you might open with Excel. It's a client-server application, allowing the server to do a lot of the heavy lifting and the client to open spreadsheets with millions of rows. With datasets of that size, especially if you're unfamiliar with the contents, it's very hard to get a good grasp of what's in it using traditional tools. With T.Rex, the multiple views allow you to see categorical, temporal, numerical, relational, and summary data. The interactivity lets you look across your data and see how things relate to each other.

  13. Magneto-exciton-polariton condensation in a sub-wavelength high contrast grating based vertical microcavity

    SciTech Connect (OSTI)

    Fischer, J.; Brodbeck, S.; Worschech, L.; Kamp, M.; Schneider, C.; Hfling, S.; Zhang, B.; Wang, Z.; Deng, H.

    2014-03-03

    We comparably investigate the diamagnetic shift of an uncoupled quantum well exciton with a microcavity exciton-polariton condensate on the same device. The sample is composed of multiple GaAs quantum wells in an AlAs microcavity, surrounded by a Bragg reflector and a sub-wavelength high contrast grating reflector. Our study introduces an independent and easily applicable technique, namely, the measurement of the condensate diamagnetic shift, which directly probes matter contributions in polariton condensates and hence discriminates it from a conventional photon laser.

  14. Effect of CT contrast on volumetric arc therapy planning (RapidArc and helical tomotherapy) for head and neck cancer

    SciTech Connect (OSTI)

    Liu, Alan J.; Vora, Nayana; Suh, Steve; Liu, An; Schultheiss, Timothy E.; Wong, Jeffrey Y.C.

    2015-04-01

    The objectives of the study were to evaluate the effect of intravenous contrast in the dosimetry of helical tomotherapy and RapidArc treatment for head and neck cancer and determine if it is acceptable during the computed tomography (CT) simulation to acquire only CT with contrast for treatment planning of head and neck cancer. Overall, 5 patients with head and neck cancer (4 men and 1 woman) treated on helical tomotherapy were analyzed retrospectively. For each patient, 2 consecutive CT scans were performed. The first CT set was scanned before the contrast injection and secondary study set was scanned 45 seconds after contrast. The 2 CTs were autoregistered using the same Digital Imaging and Communications in Medicine coordinates. Tomotherapy and RapidArc plans were generated on 1 CT data set and subsequently copied to the second CT set. Dose calculation was performed, and dose difference was analyzed to evaluate the influence of intravenous contrast media. The dose matrix used for comparison included mean, minimum and maximum doses of planning target volume (PTV), PTV dose coverage, and V{sub 45} {sub Gy}, V{sub 30} {sub Gy}, and V{sub 20} {sub Gy} organ doses. Treatment planning on contrasted images generally showed a lower dose to both organs and target than plans on noncontrasted images. The doses for the points of interest placed in the organs and target rarely changed more than 2% in any patient. In conclusion, treatment planning using a contrasted image had insignificant effect on the dose to the organs and targets. In our opinion, only CT with contrast needs to be acquired during the CT simulation for head and neck cancer. Dose calculations performed on contrasted images can potentially underestimate the delivery dose slightly. However, the errors of planning on a contrasted image should not affect the result in clinically significant way.

  15. Web-Based Visual Analytics for Social Media

    SciTech Connect (OSTI)

    Best, Daniel M.; Bruce, Joseph R.; Dowson, Scott T.; Love, Oriana J.; McGrath, Liam R.

    2012-05-20

    Social media provides a rich source of data that reflects current trends and public opinion on a multitude of topics. The data can be harvested from Twitter, Facebook, Blogs, and other social applications. The high rate of adoption of social media has created a domain that has an ever expanding volume of data that make it difficult to use the raw data for analysis. Information visual analytics is key in drawing out features of interest in social media. The Scalable Reasoning System is an application that couples a back end server performing analysis algorithms and an intuitive front end visualization to allow for investigation. We provide a componentized system that can be rapidly adapted to customer needs such that the information they are most interested in is brought to their attention through the application. To this end, we have developed a social media application for use by emergency operations for the city of Seattle to show current weather and traffic trends which is important for their tasks.

  16. Perm Web: remote parallel and distributed volume visualization

    SciTech Connect (OSTI)

    Wittenbrink, C.M.; Kim, K.; Story, J.; Pang, A.; Hollerbach, K.; Max, N.

    1997-01-01

    In this paper we present a system for visualizing volume data from remote supercomputers (PermWeb). We have developed both parallel volume rendering algorithms, and the World Wide Web software for accessing the data at the remote sites. The implementation uses Hypertext Markup Language (HTML), Java, and Common Gateway Interface (CGI) scripts to connect World Wide Web (WWW) servers/clients to our volume renderers. The front ends are interactive Java classes for specification of view, shading, and classification inputs. We present performance results, and implementation details for connections to our computing resources at the University of California Santa Cruz including a MasPar MP-2, SGI Reality Engine-RE2, and SGI Challenge machines. We apply the system to the task of visualizing trabecular bone from finite element simulations. Fast volume rendering on remote compute servers through a web interface allows us to increase the accessibility of the results to more users. User interface issues, overviews of parallel algorithm developments, and overall system interfaces and protocols are presented. Access is available through Uniform Resource Locator (URL) http://www.cse.ucsc.edu/research/slvg/. 26 refs., 7 figs.

  17. Visual Sample Plan Version 7.0 User's Guide

    SciTech Connect (OSTI)

    Matzke, Brett D.; Newburn, Lisa LN; Hathaway, John E.; Bramer, Lisa M.; Wilson, John E.; Dowson, Scott T.; Sego, Landon H.; Pulsipher, Brent A.

    2014-03-01

    User's guide for VSP 7.0 This user's guide describes Visual Sample Plan (VSP) Version 7.0 and provides instructions for using the software. VSP selects the appropriate number and location of environmental samples to ensure that the results of statistical tests performed to provide input to risk decisions have the required confidence and performance. VSP Version 7.0 provides sample-size equations or algorithms needed by specific statistical tests appropriate for specific environmental sampling objectives. It also provides data quality assessment and statistical analysis functions to support evaluation of the data and determine whether the data support decisions regarding sites suspected of contamination. The easy-to-use program is highly visual and graphic. VSP runs on personal computers with Microsoft Windows operating systems (XP, Vista, Windows 7, and Windows 8). Designed primarily for project managers and users without expertise in statistics, VSP is applicable to two- and three-dimensional populations to be sampled (e.g., rooms and buildings, surface soil, a defined layer of subsurface soil, water bodies, and other similar applications) for studies of environmental quality. VSP is also applicable for designing sampling plans for assessing chem/rad/bio threat and hazard identification within rooms and buildings, and for designing geophysical surveys for unexploded ordnance (UXO) identification.

  18. Advanced 3D Sensing and Visualization System for Unattended Monitoring

    SciTech Connect (OSTI)

    Carlson, J.J.; Little, C.Q.; Nelson, C.L.

    1999-01-01

    The purpose of this project was to create a reliable, 3D sensing and visualization system for unattended monitoring. The system provides benefits for several of Sandia's initiatives including nonproliferation, treaty verification, national security and critical infrastructure surety. The robust qualities of the system make it suitable for both interior and exterior monitoring applications. The 3D sensing system combines two existing sensor technologies in a new way to continuously maintain accurate 3D models of both static and dynamic components of monitored areas (e.g., portions of buildings, roads, and secured perimeters in addition to real-time estimates of the shape, location, and motion of humans and moving objects). A key strength of this system is the ability to monitor simultaneous activities on a continuous basis, such as several humans working independently within a controlled workspace, while also detecting unauthorized entry into the workspace. Data from the sensing system is used to identi~ activities or conditions that can signi~ potential surety (safety, security, and reliability) threats. The system could alert a security operator of potential threats or could be used to cue other detection, inspection or warning systems. An interactive, Web-based, 3D visualization capability was also developed using the Virtual Reality Modeling Language (VRML). The intex%ace allows remote, interactive inspection of a monitored area (via the Internet or Satellite Links) using a 3D computer model of the area that is rendered from actual sensor data.

  19. Geospatial Visualization of Global Satellite Images with Vis-EROS

    SciTech Connect (OSTI)

    Standart, G. D.; Stulken, K. R.; Zhang, Xuesong; Zong, Ziliang

    2011-04-13

    The Earth Resources Observation and Science (EROS) Center of U.S. Geological Survey is currently managing and maintaining the world largest satellite images distribution system, which provides 24/7 free download service for researchers all over the globe in many areas such as Geology, Hydrology, Climate Modeling, and Earth Sciences. A large amount of geospatial data contained in satellite images maintained by EROS is generated every day. However, this data is not well utilized due to the lack of efficient data visualization tools. This software implements a method for visualizing various characteristics of the global satellite image download requests. More specifically, Keyhole Markup Language (KML) files are generated which can be loaded into an earth browser such as Google Earth. Colored rectangles associated with stored satellite scenes are painted onto the earth browser; and the color and opacity of each rectangle is varied as a function of the popularity of the corresponding satellite image. An analysis of the geospatial information obtained relative to specified time constraints provides an ability to relate image download requests to environmental, political, and social events.

  20. Coherent Image Layout using an Adaptive Visual Vocabulary

    SciTech Connect (OSTI)

    Dillard, Scott E.; Henry, Michael J.; Bohn, Shawn J.; Gosink, Luke J.

    2013-03-06

    When querying a huge image database containing millions of images, the result of the query may still contain many thousands of images that need to be presented to the user. We consider the problem of arranging such a large set of images into a visually coherent layout, one that places similar images next to each other. Image similarity is determined using a bag-of-features model, and the layout is constructed from a hierarchical clustering of the image set by mapping an in-order traversal of the hierarchy tree into a space-filling curve. This layout method provides strong locality guarantees so we are able to quantitatively evaluate performance using standard image retrieval benchmarks. Performance of the bag-of-features method is best when the vocabulary is learned on the image set being clustered. Because learning a large, discriminative vocabulary is a computationally demanding task, we present a novel method for efficiently adapting a generic visual vocabulary to a particular dataset. We evaluate our clustering and vocabulary adaptation methods on a variety of image datasets and show that adapting a generic vocabulary to a particular set of images improves performance on both hierarchical clustering and image retrieval tasks.

  1. Visualizing Diurnal Population Change in Urban Areas for Emergency Management

    SciTech Connect (OSTI)

    Kobayashi, Tetsuo; Medina, Richard M; Cova, Thomas

    2011-01-01

    There is an increasing need for a quick, simple method to represent diurnal population change in metropolitan areas for effective emergency management and risk analysis. Many geographic studies rely on decennial U.S. Census data that assume that urban populations are static in space and time. This has obvious limitations in the context of dynamic geographic problems. The U.S. Department of Transportation publishes population data at the transportation analysis zone level in fifteen-minute increments. This level of spatial and temporal detail allows for improved dynamic population modeling. This article presents a methodology for visualizing and analyzing diurnal population change for metropolitan areas based on this readily available data. Areal interpolation within a geographic information system is used to create twenty-four (one per hour) population surfaces for the larger metropolitan area of Salt Lake County, Utah. The resulting surfaces represent diurnal population change for an average workday and are easily combined to produce an animation that illustrates population dynamics throughout the day. A case study of using the method to visualize population distributions in an emergency management context is provided using two scenarios: a chemical release and a dirty bomb in Salt Lake County. This methodology can be used to address a wide variety of problems in emergency management.

  2. Sort-First, Distributed Memory Parallel Visualization and Rendering

    SciTech Connect (OSTI)

    Bethel, E. Wes; Humphreys, Greg; Paul, Brian; Brederson, J. Dean

    2003-07-15

    While commodity computing and graphics hardware has increased in capacity and dropped in cost, it is still quite difficult to make effective use of such systems for general-purpose parallel visualization and graphics. We describe the results of a recent project that provides a software infrastructure suitable for general-purpose use by parallel visualization and graphics applications. Our work combines and extends two technologies: Chromium, a stream-oriented framework that implements the OpenGL programming interface; and OpenRM Scene Graph, a pipelined-parallel scene graph interface for graphics data management. Using this combination, we implement a sort-first, distributed memory, parallel volume rendering application. We describe the performance characteristics in terms of bandwidth requirements and highlight key algorithmic considerations needed to implement the sort-first system. We characterize system performance using a distributed memory parallel volume rendering application, a nd present performance gains realized by using scene specific knowledge to accelerate rendering through reduced network bandwidth. The contribution of this work is an exploration of general-purpose, sort-first architecture performance characteristics as applied to distributed memory, commodity hardware, along with a description of the algorithmic support needed to realize parallel, sort-first implementations.

  3. X-ray scatter imaging of hepatocellular carcinoma in a mouse model using nanoparticle contrast agents

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Rand, Danielle; Derdak, Zoltan; Carlson, Rolf; Wands, Jack R.; Rose-Petruck, Christoph

    2015-10-29

    Hepatocellular carcinoma (HCC) is one of the most common malignant tumors worldwide and is almost uniformly fatal. Current methods of detection include ultrasound examination and imaging by CT scan or MRI; however, these techniques are problematic in terms of sensitivity and specificity, and the detection of early tumors (<1 cm diameter) has proven elusive. Better, more specific, and more sensitive detection methods are therefore urgently needed. Here we discuss the application of a newly developed x-ray imaging technique called Spatial Frequency Heterodyne Imaging (SFHI) for the early detection of HCC. SFHI uses x-rays scattered by an object to form anmore » image and is more sensitive than conventional absorption-based x-radiography. We show that tissues labeled in vivo with gold nanoparticle contrast agents can be detected using SFHI. We also demonstrate that directed targeting and SFHI of HCC tumors in a mouse model is possible through the use of HCC-specific antibodies. As a result, the enhanced sensitivity of SFHI relative to currently available techniques enables the x-ray imaging of tumors that are just a few millimeters in diameter and substantially reduces the amount of nanoparticle contrast agent required for intravenous injection relative to absorption-based x-ray imaging.« less

  4. X-ray Phase Contrast Imaging of Calcified Tissue and Biomaterial Structure in Bioreactor Engineered Tissues

    SciTech Connect (OSTI)

    Appel, Alyssa A.; Larson, Jeffery C.; Garson, III, Alfred B.; Guan, Huifeng; Zhong, Zhong; Nguyen, Bao-Ngoc; Fisher, John P.; Anastasio, Mark A.; Brey, Eric M.

    2014-11-04

    Tissues engineered in bioreactor systems have been used clinically to replace damaged tissues and organs. In addition, these systems are under continued development for many tissue engineering applications. The ability to quantitatively assess material structure and tissue formation is critical for evaluating bioreactor efficacy and for preimplantation assessment of tissue quality. These techniques allow for the nondestructive and longitudinal monitoring of large engineered tissues within the bioreactor systems and will be essential for the translation of these strategies to viable clinical therapies. X-ray Phase Contrast (XPC) imaging techniques have shown tremendous promise for a number of biomedical applications owing to their ability to provide image contrast based on multiple X-ray properties, including absorption, refraction, and scatter. In this research, mesenchymal stem cell-seeded alginate hydrogels were prepared and cultured under osteogenic conditions in a perfusion bioreactor. The constructs were imaged at various time points using XPC microcomputed tomography (µCT). Imaging was performed with systems using both synchrotron- and tube-based X-ray sources. XPC µCT allowed for simultaneous three-dimensional (3D) quantification of hydrogel size and mineralization, as well as spatial information on hydrogel structure and mineralization. Samples were processed for histological evaluation and XPC showed similar features to histology and quantitative analysis consistent with the histomorphometry. Furthermore, these results provide evidence of the significant potential of techniques based on XPC for noninvasive 3D imaging engineered tissues grown in bioreactors.

  5. Three-dimensional flow contrast imaging of deep tissue using noncontact diffuse correlation tomography

    SciTech Connect (OSTI)

    Lin, Yu; Huang, Chong; Irwin, Daniel; He, Lian; Shang, Yu; Yu, Guoqiang

    2014-03-24

    This study extended our recently developed noncontact diffuse correlation spectroscopy flowmetry system into noncontact diffuse correlation tomography (ncDCT) for three-dimensional (3-D) flow imaging of deep tissue. A linear array of 15 photodetectors and two laser sources connected to a mobile lens-focusing system enabled automatic and noncontact scanning of flow in a region of interest. These boundary measurements were combined with a finite element framework for DCT image reconstruction implemented into an existing software package. This technique was tested in computer simulations and using a tissue-like phantom with anomaly flow contrast design. The cylindrical tube-shaped anomaly was clearly reconstructed in both simulation and phantom. Recovered and assigned flow contrast changes in anomaly were found to be highly correlated: regression slope = 1.00, R{sup 2} = 1.00, and p < 10{sup −5} in simulation and regression slope ≥ 0.97, R{sup 2} ≥ 0.96, and p < 10{sup −3} in phantom. These results exhibit promise of our ncDCT technique for 3-D imaging of deep tissue blood flow heterogeneities.

  6. Phase-contrast imaging using ultrafast x-rays in laser-shocked materials

    SciTech Connect (OSTI)

    Workman, Jonathan B; Cobble, James A; Flippo, Kirk; Gautier, Donald C; Montgomery, David S; Offermann, Dustin T

    2010-01-01

    High-energy x-rays, > 10-keV, can be efficiently produced from ultrafast laser target interactions with many applications to dense target materials in Inertial Confinement Fusion (ICF) and High-Energy Density Physics (HEDP). These same x-rays can also be applied to measurements of low-density materials inside high-density hohlraum environments. In the experiments presented, high-energy x-ray images of laser-shocked polystyrene are produced through phase contrast imaging. The plastic targets are nominally transparent to traditional x-ray absorption but show detailed features in regions of high density gradients due to refractive effects often called phase contrast imaging. The 200-TW Trident laser is used both to produce the x-ray source and to shock the polystyrene target. X-rays at 17-keV produced from 2-ps, 100-J laser interactions with a 12-micron molybdenum wire are used to produce a small source size, required for optimizing refractive effects. Shocks are driven in the 1-mm thick polystyrene target using 2-ns, 250-J, 532-nm laser drive with phase plates. X-ray images of shocks compare well to 1-D hydro calculations, HELIOS-CR.

  7. X-ray scatter imaging of hepatocellular carcinoma in a mouse model using nanoparticle contrast agents

    SciTech Connect (OSTI)

    Rand, Danielle; Derdak, Zoltan; Carlson, Rolf; Wands, Jack R.; Rose-Petruck, Christoph

    2015-10-29

    Hepatocellular carcinoma (HCC) is one of the most common malignant tumors worldwide and is almost uniformly fatal. Current methods of detection include ultrasound examination and imaging by CT scan or MRI; however, these techniques are problematic in terms of sensitivity and specificity, and the detection of early tumors (<1 cm diameter) has proven elusive. Better, more specific, and more sensitive detection methods are therefore urgently needed. Here we discuss the application of a newly developed x-ray imaging technique called Spatial Frequency Heterodyne Imaging (SFHI) for the early detection of HCC. SFHI uses x-rays scattered by an object to form an image and is more sensitive than conventional absorption-based x-radiography. We show that tissues labeled in vivo with gold nanoparticle contrast agents can be detected using SFHI. We also demonstrate that directed targeting and SFHI of HCC tumors in a mouse model is possible through the use of HCC-specific antibodies. As a result, the enhanced sensitivity of SFHI relative to currently available techniques enables the x-ray imaging of tumors that are just a few millimeters in diameter and substantially reduces the amount of nanoparticle contrast agent required for intravenous injection relative to absorption-based x-ray imaging.

  8. Anatomical noise in contrast-enhanced digital mammography. Part I. Single-energy imaging

    SciTech Connect (OSTI)

    Hill, Melissa L.; Yaffe, Martin J.; Mainprize, James G.; Carton, Ann-Katherine; Muller, Serge; Ebrahimi, Mehran; Jong, Roberta A.; Dromain, Clarisse

    2013-05-15

    Purpose: The use of an intravenously injected iodinated contrast agent could help increase the sensitivity of digital mammography by adding information on tumor angiogenesis. Two approaches have been made for clinical implementation of contrast-enhanced digital mammography (CEDM), namely, single-energy (SE) and dual-energy (DE) imaging. In each technique, pairs of mammograms are acquired, which are then subtracted with the intent to cancel the appearance of healthy breast tissue to permit sensitive detection and specific characterization of lesions. Patterns of contrast agent uptake in the healthy parenchyma, and uncanceled signal from background tissue create a 'clutter' that can mask or mimic an enhancing lesion. This type of 'anatomical noise' is often the limiting factor in lesion detection tasks, and thus, noise quantification may be useful for cascaded systems analysis of CEDM and for phantom development. In this work, the authors characterize the anatomical noise in CEDM clinical images and the authors evaluate the influence of the x-ray energy used for acquisition, the presence of iodine in the breast, and the timing of imaging postcontrast administration on anatomical noise. The results are presented in a two-part report, with SE CEDM described here, and DE CEDM in Part II. Methods: A power law is used to model anatomical noise in CEDM images. The exponent, {beta}, which describes the anatomical structure, and the constant {alpha}, which represents the magnitude of the noise, are determined from Wiener spectra (WS) measurements on images. A total of 42 SE CEDM cases from two previous clinical pilot studies are assessed. The parameters {alpha} and {beta} are measured both from unprocessed images and from subtracted images. Results: Consistent results were found between the two SE CEDM pilot studies, where a significant decrease in {beta} from a value of approximately 3.1 in the unprocessed images to between about 1.1 and 1.8 in the subtracted images was

  9. EXC-16-0010 - In the Matter of Visual Sound LLC dba Truetone | Department

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    of Energy 10 - In the Matter of Visual Sound LLC dba Truetone EXC-16-0010 - In the Matter of Visual Sound LLC dba Truetone On July 5, 2016, OHA granted an Application for Exception filed by Visual Sound LLC dba Truetone (Truetone). Truetone, a manufacturer of specialized noise free external power supplies (EPSs) for musical equipment, requested exception relief from the applicable provisions of 10 CFR Part 430, Energy Conservation Program: Energy Conservation Standards for External Power

  10. Visualizing Energy Infrastructure Exposure to Storm Surge and Sea-Level

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Rise | Department of Energy Visualizing Energy Infrastructure Exposure to Storm Surge and Sea-Level Rise Visualizing Energy Infrastructure Exposure to Storm Surge and Sea-Level Rise November 2, 2015 - 11:10am Addthis Alice Lippert Alice Lippert Senior Technical Advisor to the Deputy Assistant Secretary of Energy Infrastructure Modeling and Analysis The Office of Electricity Delivery and Energy Reliability (OE) recently released an innovative, interactive visualization tool to highlight the

  11. Correlation between human observer performance and model observer performance in differential phase contrast CT

    SciTech Connect (OSTI)

    Li, Ke; Garrett, John; Chen, Guang-Hong

    2013-11-15

    Purpose: With the recently expanding interest and developments in x-ray differential phase contrast CT (DPC-CT), the evaluation of its task-specific detection performance and comparison with the corresponding absorption CT under a given radiation dose constraint become increasingly important. Mathematical model observers are often used to quantify the performance of imaging systems, but their correlations with actual human observers need to be confirmed for each new imaging method. This work is an investigation of the effects of stochastic DPC-CT noise on the correlation of detection performance between model and human observers with signal-known-exactly (SKE) detection tasks.Methods: The detectabilities of different objects (five disks with different diameters and two breast lesion masses) embedded in an experimental DPC-CT noise background were assessed using both model and human observers. The detectability of the disk and lesion signals was then measured using five types of model observers including the prewhitening ideal observer, the nonprewhitening (NPW) observer, the nonprewhitening observer with eye filter and internal noise (NPWEi), the prewhitening observer with eye filter and internal noise (PWEi), and the channelized Hotelling observer (CHO). The same objects were also evaluated by four human observers using the two-alternative forced choice method. The results from the model observer experiment were quantitatively compared to the human observer results to assess the correlation between the two techniques.Results: The contrast-to-detail (CD) curve generated by the human observers for the disk-detection experiments shows that the required contrast to detect a disk is inversely proportional to the square root of the disk size. Based on the CD curves, the ideal and NPW observers tend to systematically overestimate the performance of the human observers. The NPWEi and PWEi observers did not predict human performance well either, as the slopes of their CD

  12. Real-time automatic fiducial marker tracking in low contrast cine-MV images

    SciTech Connect (OSTI)

    Lin, Wei-Yang; Lin, Shu-Fang; Yang, Sheng-Chang; Liou, Shu-Cheng; Nath, Ravinder; Liu Wu

    2013-01-15

    Purpose: To develop a real-time automatic method for tracking implanted radiographic markers in low-contrast cine-MV patient images used in image-guided radiation therapy (IGRT). Methods: Intrafraction motion tracking using radiotherapy beam-line MV images have gained some attention recently in IGRT because no additional imaging dose is introduced. However, MV images have much lower contrast than kV images, therefore a robust and automatic algorithm for marker detection in MV images is a prerequisite. Previous marker detection methods are all based on template matching or its derivatives. Template matching needs to match object shape that changes significantly for different implantation and projection angle. While these methods require a large number of templates to cover various situations, they are often forced to use a smaller number of templates to reduce the computation load because their methods all require exhaustive search in the region of interest. The authors solve this problem by synergetic use of modern but well-tested computer vision and artificial intelligence techniques; specifically the authors detect implanted markers utilizing discriminant analysis for initialization and use mean-shift feature space analysis for sequential tracking. This novel approach avoids exhaustive search by exploiting the temporal correlation between consecutive frames and makes it possible to perform more sophisticated detection at the beginning to improve the accuracy, followed by ultrafast sequential tracking after the initialization. The method was evaluated and validated using 1149 cine-MV images from two prostate IGRT patients and compared with manual marker detection results from six researchers. The average of the manual detection results is considered as the ground truth for comparisons. Results: The average root-mean-square errors of our real-time automatic tracking method from the ground truth are 1.9 and 2.1 pixels for the two patients (0.26 mm/pixel). The

  13. Quantitative Visualization of ChIP-chip Data by Using Linked...

    Office of Scientific and Technical Information (OSTI)

    As a result, it is critical to have a tool to facilitate the quantitative visualization of differences between transcription factors and the genomic regions they bind to understand ...

  14. Ultrafast X-ray Phase-Enhanced Microimaging for Visualizing Fuel...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Fuel Injection Process and Diesel Sprays Ultrafast X-ray Phase-Enhanced Microimaging for Visualizing Fuel Injection Process and Diesel Sprays 2005 Diesel Engine Emissions ...

  15. OpenGl Visualization Tool and Library Version: 1.0

    Energy Science and Technology Software Center (OSTI)

    2010-06-22

    GLVis is an OpenGL tool for visualization of finite element meshes and functions. When started without any options, GLVis starts a server, which waits for a socket connections and visualizes any recieved data. This way the results of simulations on a remote (parallel) machine can be visualized on the lical user desktop. GLVis can also be used to visualize a mesh with or without a finite element function (solution). It can run a batch sequencemore » of commands (GLVis scripts), or display previously saved socket streams.« less

  16. Ideal-observer detectability in photon-counting differential phase-contrast imaging using a linear-systems approach

    SciTech Connect (OSTI)

    Fredenberg, Erik; Danielsson, Mats; Stayman, J. Webster; Siewerdsen, Jeffrey H.; Aslund, Magnus

    2012-09-15

    Purpose: To provide a cascaded-systems framework based on the noise-power spectrum (NPS), modulation transfer function (MTF), and noise-equivalent number of quanta (NEQ) for quantitative evaluation of differential phase-contrast imaging (Talbot interferometry) in relation to conventional absorption contrast under equal-dose, equal-geometry, and, to some extent, equal-photon-economy constraints. The focus is a geometry for photon-counting mammography. Methods: Phase-contrast imaging is a promising technology that may emerge as an alternative or adjunct to conventional absorption contrast. In particular, phase contrast may increase the signal-difference-to-noise ratio compared to absorption contrast because the difference in phase shift between soft-tissue structures is often substantially larger than the absorption difference. We have developed a comprehensive cascaded-systems framework to investigate Talbot interferometry, which is a technique for differential phase-contrast imaging. Analytical expressions for the MTF and NPS were derived to calculate the NEQ and a task-specific ideal-observer detectability index under assumptions of linearity and shift invariance. Talbot interferometry was compared to absorption contrast at equal dose, and using either a plane wave or a spherical wave in a conceivable mammography geometry. The impact of source size and spectrum bandwidth was included in the framework, and the trade-off with photon economy was investigated in some detail. Wave-propagation simulations were used to verify the analytical expressions and to generate example images. Results: Talbot interferometry inherently detects the differential of the phase, which led to a maximum in NEQ at high spatial frequencies, whereas the absorption-contrast NEQ decreased monotonically with frequency. Further, phase contrast detects differences in density rather than atomic number, and the optimal imaging energy was found to be a factor of 1.7 higher than for absorption

  17. Visualization of Charge Distribution in a Lithium Battery Electrode

    SciTech Connect (OSTI)

    Liu, Jun; Kunz, Martin; Chen, Kai; Tamura, Nobumichi; Richardson, Thomas J.

    2010-07-02

    We describe a method for direct determination and visualization of the distribution of charge in a composite electrode. Using synchrotron X-ray microdiffraction, state-of-charge profiles in-plane and normal to the current collector were measured. In electrodes charged at high rate, the signatures of nonuniform current distribution were evident. The portion of a prismatic cell electrode closest to the current collector tab had the highest state of charge due to electronic resistance in the composite electrode and supporting foil. In a coin cell electrode, the active material at the electrode surface was more fully charged than that close to the current collector because the limiting factor in this case is ion conduction in the electrolyte contained within the porous electrode.

  18. Wide-area, real-time monitoring and visualization system

    DOE Patents [OSTI]

    Budhraja, Vikram S.; Dyer, James D.; Martinez Morales, Carlos A.

    2011-11-15

    A real-time performance monitoring system for monitoring an electric power grid. The electric power grid has a plurality of grid portions, each grid portion corresponding to one of a plurality of control areas. The real-time performance monitoring system includes a monitor computer for monitoring at least one of reliability metrics, generation metrics, transmission metrics, suppliers metrics, grid infrastructure security metrics, and markets metrics for the electric power grid. The data for metrics being monitored by the monitor computer are stored in a data base, and a visualization of the metrics is displayed on at least one display computer having a monitor. The at least one display computer in one said control area enables an operator to monitor the grid portion corresponding to a different said control area.

  19. Visualizing 3D velocity fields near contour surfaces. Revision 1

    SciTech Connect (OSTI)

    Max, N.; Crawfis, R.; Grant, C.

    1994-08-08

    Vector field rendering is difficult in 3D because the vector icons overlap and hide each other. We propose four different techniques for visualizing vector fields only near surfaces. The first uses motion blurred particles in a thickened region around the surface. The second uses a voxel grid to contain integral curves of the vector field. The third uses many antialiased lines through the surface, and the fourth uses hairs sprouting from the surface and then bending in the direction of the vector field. All the methods use the graphics pipeline, allowing real time rotation and interaction, and the first two methods can animate the texture to move in the flow determined by the velocity field.

  20. Visualization and analysis of eddies in a global ocean simulation

    SciTech Connect (OSTI)

    Williams, Sean J; Hecht, Matthew W; Petersen, Mark; Strelitz, Richard; Maltrud, Mathew E; Ahrens, James P; Hlawitschka, Mario; Hamann, Bernd

    2010-10-15

    Eddies at a scale of approximately one hundred kilometers have been shown to be surprisingly important to understanding large-scale transport of heat and nutrients in the ocean. Due to difficulties in observing the ocean directly, the behavior of eddies below the surface is not very well understood. To fill this gap, we employ a high-resolution simulation of the ocean developed at Los Alamos National Laboratory. Using large-scale parallel visualization and analysis tools, we produce three-dimensional images of ocean eddies, and also generate a census of eddy distribution and shape averaged over multiple simulation time steps, resulting in a world map of eddy characteristics. As expected from observational studies, our census reveals a higher concentration of eddies at the mid-latitudes than the equator. Our analysis further shows that mid-latitude eddies are thicker, within a range of 1000-2000m, while equatorial eddies are less than 100m thick.

  1. Interactive Visual Analysis of High Throughput Text Streams

    SciTech Connect (OSTI)

    Steed, Chad A; Potok, Thomas E; Patton, Robert M; Goodall, John R; Maness, Christopher S; Senter, James K

    2012-01-01

    The scale, velocity, and dynamic nature of large scale social media systems like Twitter demand a new set of visual analytics techniques that support near real-time situational awareness. Social media systems are credited with escalating social protest during recent large scale riots. Virtual communities form rapidly in these online systems, and they occasionally foster violence and unrest which is conveyed in the users language. Techniques for analyzing broad trends over these networks or reconstructing conversations within small groups have been demonstrated in recent years, but state-of- the-art tools are inadequate at supporting near real-time analysis of these high throughput streams of unstructured information. In this paper, we present an adaptive system to discover and interactively explore these virtual networks, as well as detect sentiment, highlight change, and discover spatio- temporal patterns.

  2. Remote visual inspection for NDE in power plants

    SciTech Connect (OSTI)

    Samsonov, P. )

    1993-06-01

    Remote visual inspection equipment such as borescopes, and video scopes give power plant nondestructive examination (NDE) groups the necessary tools to establish superior corrective and preventive plant maintenance programs. These scopes allow the user to evaluate the condition of pipes, boilers, turbines, heat exchangers, and other critical machinery without costly and time-consuming disassembly. Overall plant efficiency is increased and the likelihood of catastrophic failure is reduced significantly. Insertion diameters vary from 0.6 mm to 20 mm and come in lengths of just a few inches to as long as 100 ft. (30 m). Ancillary equipment such as video and digital processors provides a permanent record of the inspection and uses sophisticated three-dimensional (3-D) measurement, trend analysis, documentation, and image manipulation.

  3. Human alteration of the rural landscape: Variations in visual perception

    SciTech Connect (OSTI)

    Cloquell-Ballester, Vicente-Agustin Carmen Torres-Sibille, Ana del; Cloquell-Ballester, Victor-Andres; Santamarina-Siurana, Maria Cristina

    2012-01-15

    The objective of this investigation is to evaluate how visual perception varies as the rural landscape is altered by human interventions of varying character. An experiment is carried out using Semantic Differential Analysis to analyse the effect of the character and the type of the intervention on perception. Interventions are divided into elements of 'permanent industrial character', 'elements of permanent rural character' and 'elements of temporary character', and these categories are sub-divided into smaller groups according to the type of development. To increase the reliability of the results, the Intraclass Correlation Coefficient tool, is applied to validate the semantic space of the perceptual responses and to determine the number of subjects required for a reliable evaluation of the scenes.

  4. Final Report for "Analyzing and visualizing next generation climate data"

    SciTech Connect (OSTI)

    Pletzer, Alexander

    2012-11-13

    The project "Analyzing and visualizing next generation climate data" adds block-structured (mosaic) grid support, parallel processing, and 2D/3D curvilinear interpolation to the open-source UV-CDAT climate data analysis tool. Block structured grid support complies to the Gridspec extension submitted to the Climate and Forecast metadata conventions. It contains two parts: aggregation of data spread over multiple mosaic tiles (M-SPEC) and aggregation of temporal data stored in different files (F-SPEC). Together, M-SPEC and F-SPEC allow users to interact with data stored in multiple files as if the data were in a single file. For computational expensive tasks, a flexible, multi-dimensional, multi-type distributed array class allows users to process data in parallel using remote memory access. Both nodal and cell based interpolation is supported; users can choose between different interpolation libraries including ESMF and LibCF depending on the their particular needs.

  5. Wide-area, real-time monitoring and visualization system

    DOE Patents [OSTI]

    Budhraja, Vikram S.; Dyer, James D.; Martinez Morales, Carlos A.

    2013-03-19

    A real-time performance monitoring system for monitoring an electric power grid. The electric power grid has a plurality of grid portions, each grid portion corresponding to one of a plurality of control areas. The real-time performance monitoring system includes a monitor computer for monitoring at least one of reliability metrics, generation metrics, transmission metrics, suppliers metrics, grid infrastructure security metrics, and markets metrics for the electric power grid. The data for metrics being monitored by the monitor computer are stored in a data base, and a visualization of the metrics is displayed on at least one display computer having a monitor. The at least one display computer in one said control area enables an operator to monitor the grid portion corresponding to a different said control area.

  6. Evaluating System Parameters on a Dragonfly using Simulation and Visualization

    SciTech Connect (OSTI)

    Bhatele, Abhinav; Jain, Nikhil; Livnat, Yarden; Pascucci, Valerio; Bremer, Peer-Timo

    2015-04-24

    The dragon y topology is becoming a popular choice for build- ing high-radix, low-diameter networks with high-bandwidth links. Even with a powerful network, preliminary experi- ments on Edison at NERSC have shown that for communica- tion heavy applications, job interference and thus presumably job placement remains an important factor. In this paper, we explore the e ects of job placement, job sizes, parallel workloads and network con gurations on network through- put to better understand inter-job interference. We use a simulation tool called Damsel y to model the network be- havior of Edison and study the impact of various system parameters on network throughput. Parallel workloads based on ve representative communication patters are used and the simulation studies on up to 131,072 cores are aided by a new visualization of the dragon y network.

  7. Highly parallel vector visualization using line integral convolution

    SciTech Connect (OSTI)

    Cabral, B.; Leedom, C.

    1995-12-01

    Line Integral Convolution (LIC) is an effective imaging operator for visualizing large vector fields. It works by blurring an input image along local vector field streamlines yielding an output image. LIC is highly parallelizable because it uses only local read-sharing of input data and no write-sharing of output data. Both coarse- and fine-grained implementations have been developed. The coarse-grained implementation uses a straightforward row-tiling of the vector field to parcel out work to multiple CPUs. The fine-grained implementation uses a series of image warps and sums to compute the LIC algorithm across the entire vector field at once. This is accomplished by novel use of high-performance graphics hardware texture mapping and accumulation buffers.

  8. Determination of shape anisotropy in embedded low contrast submonolayer quantum dot structures

    SciTech Connect (OSTI)

    Dhomkar, S.; Ji, H.; Kuskovsky, I. L.; Vaxelaire, N.; Noyan, I. C.; Shuvayev, V.; Tamargo, M. C.

    2015-12-21

    We describe a procedure for the morphological characterization of hard-to-image submonolayer quantum dot structures. This procedure employs high resolution x-ray diffraction based reciprocal space mapping, accompanied by rigorous diffraction modeling for precise determination of the morphology of submonolayer quantum dots. Our modelling results and experimental data clearly show that the investigated quantum dots are anisotropically elongated along the [110] orientation. Complementary polarization dependent photoluminescence measurements, combined with our previously reported magneto-photoluminescence data, confirm this conclusion. Our formalism enables direct extraction of structural information of complex embedded three-dimensional structures, which, due to their low electron density contrast with respect to the surrounding host matrix, cannot be readily investigated by traditional electron diffraction techniques.

  9. Note: Gratings on low absorbing substrates for x-ray phase contrast imaging

    SciTech Connect (OSTI)

    Koch, F. J. Schröter, T. J.; Kunka, D.; Meyer, P.; Meiser, J.; Faisal, A.; Khalil, M. I.; Mohr, J.; Birnbacher, L.; Viermetz, M.; Pfeiffer, F.; Walter, M.; Schulz, J.

    2015-12-15

    Grating based X-ray phase contrast imaging is on the verge of being applied in clinical settings. To achieve this goal, compact setups with high sensitivity and dose efficiency are necessary. Both can be increased by eliminating unwanted absorption in the beam path, which is mainly due to the grating substrates. Fabrication of gratings via deep X-ray lithography can address this issue by replacing the commonly used silicon substrate with materials with lower X-ray absorption that fulfill certain boundary conditions. Gratings were produced on both graphite and polymer substrates without compromising on structure quality. These gratings were tested in a three-grating setup with a source operated at 40 kVp and lead to an increase in the detector photon count rate of almost a factor of 4 compared to a set of gratings on silicon substrates. As the visibility was hardly affected, this corresponds to a significant increase in sensitivity and therefore dose efficiency.

  10. Case Study: The ''Office of Real Soon Now'' for Visualization

    SciTech Connect (OSTI)

    Uselton, S.P.

    2002-03-27

    A variation on the ''Office of Real Soon Now'' has been designed and deployed at Lawrence Livermore National Laboratory (LLNL). The ASCI VIEWS (VIEWS) program [1], the element of the program developing tools for data management and visualization, is investigating a variety of display technologies, motivated in part by the large size, high resolution, and complexity of data sets that ASCI users frequently explore and analyze. While large, tiled displays have been well received at LLNL, availability and ease-of-use problems have motivated exploration of alternatives [2]. The ''Office of Real Soon Now'' Project [3, 4, 5] at the University of North Carolina at Chapel Hill (UNC) has built ''low fidelity'' versions of the ''Office of the Future'' [6, 7] that can be installed in users' offices now. At UNC, the Office of Real Soon Now installations use only a small number of relatively inexpensive projectors,generally two or three, that limit resolution and features. These projectors are connected to Microsoft Windows PCs or Apple computers that are used for daily activities, such as reading email, writing papers, and debugging programs. Even though the UNC faculty involved are predominantly computer graphics researchers, these display systems are used mainly for text-oriented applications [5]. Designing, developing, and deploying an office-based system at LLNL would provide opportunities to adapt the system to our specific uses and to evaluate such systems for a range of tasks beyond those typically found at UNC. The goals of the LLNL display system are to exceed previous UNC versions in resolution, to run Unix-based applications, and to support interactive visualization of simulation data better than can be done via current workstations and monitors.

  11. Comparison of different computed radiography systems: Physical characterization and contrast detail analysis

    SciTech Connect (OSTI)

    Rivetti, Stefano; Lanconelli, Nico; Bertolini, Marco; Nitrosi, Andrea; Burani, Aldo; Acchiappati, Domenico

    2010-02-15

    Purpose: In this study, five different units based on three different technologies--traditional computed radiography (CR) units with granular phosphor and single-side reading, granular phosphor and dual-side reading, and columnar phosphor and line-scanning reading--are compared in terms of physical characterization and contrast detail analysis. Methods: The physical characterization of the five systems was obtained with the standard beam condition RQA5. Three of the units have been developed by FUJIFILM (FCR ST-VI, FCR ST-BD, and FCR Velocity U), one by Kodak (Direct View CR 975), and one by Agfa (DX-S). The quantitative comparison is based on the calculation of the modulation transfer function (MTF), noise power spectrum (NPS), and detective quantum efficiency (DQE). Noise investigation was also achieved by using a relative standard deviation analysis. Psychophysical characterization is assessed by performing a contrast detail analysis with an automatic reading of CDRAD images. Results: The most advanced units based on columnar phosphors provide MTF values in line or better than those from conventional CR systems. The greater thickness of the columnar phosphor improves the efficiency, allowing for enhanced noise properties. In fact, NPS values for standard CR systems are remarkably higher for all the investigated exposures and especially for frequencies up to 3.5 lp/mm. As a consequence, DQE values for the three units based on columnar phosphors and line-scanning reading, or granular phosphor and dual-side reading, are neatly better than those from conventional CR systems. Actually, DQE values of about 40% are easily achievable for all the investigated exposures. Conclusions: This study suggests that systems based on the dual-side reading or line-scanning reading with columnar phosphors provide a remarkable improvement when compared to conventional CR units and yield results in line with those obtained from most digital detectors for radiography.

  12. Bogi and Capiron fields, Oriente Basin, Ecuador: Similar reservoirs but contrasting drive mechanisms and recoveries

    SciTech Connect (OSTI)

    Sanchez, H.; Morales, M.; Young, R.; Zambrano, H.

    1996-08-01

    Bogi and Capiron fields are being developed under a unit agreement with Petroecuador. These adjoining fields straddle Block 16 in the Oriente Basin and probably share a common oil water contact. Both fields are simple four-way-dip closures which produce heavy oil from Campanian sandstones of similar quality. However, the two fields are remarkably different in terms of oil production and projected recovery as a result of differing structural closures, reservoir distributions and, hence, differing drive mechanisms. The main reservoir at Bogi field is an amalgamation of two fluvial sheet sandstones thought to be low-stand deposits associated with two falls in relative sea level. The reservoir is thick (56-78 ft) and, with an observed oil column of only 38 feet, a bottom-water drive mechanism is ubiquitous. The oil is heavy (18 API) and mobility ratios unfavorable; water production is high and oil recovery from conventional drilling is expected to be 3-5%. In contrast, only the upper fluvial sheet sandstone is present in Capiron field and a reservoir thickness of 32-48 ft combined with an oil column of 99 ft ensures an edge-water drive mechanism over most of the field with concomitant initial low water production and oil recoveries of approximately 30%. The contrast between Bogi and Capiron fields highlights the problems and challenges in the Block 16 area. Small structural closures filled with heavy oil are abundant and an accurate seismic depth map coupled with an understanding of reservoir distribution are vital to economic success.

  13. Polluting of Winter Convective Clouds upon Transition from Ocean Inland Over Central California: Contrasting Case Studies

    SciTech Connect (OSTI)

    Rosenfeld, Daniel; Chemke, Rei; Prather, Kimberly; Suski, Kaitlyn; Comstock, Jennifer M.; Schmid, Beat; Tomlinson, Jason M.; Jonsson, Haf

    2014-01-01

    In-situ aircraft measurements of aerosol chemical and cloud microphysical properties were conducted during the CalWater campaign in February and March 2011 over the Sierra Nevada Mountains and the coastal waters of central California. The main objective was to elucidate the impacts of aerosol properties on clouds and precipitation forming processes. In order to accomplish this, we compared contrasting cases of clouds that ingested aerosols from different sources. The results showed that clouds containing pristine oceanic air had low cloud drop concentrations and started to develop rain 500 m above their base. This occurred both over the ocean and over the Sierra Nevada, mainly in the early morning when the radiatively cooled stable continental boundary layer was decoupled from the cloud base. Supercooled rain dominated the precipitation that formed in growing convective clouds in the pristine air, up to the -21C isotherm level. A contrasting situation was documented in the afternoon over the foothills of the Sierra Nevada, when the clouds ingested high pollution aerosol concentrations produced in the Central Valley. This led to slow growth of the cloud drop effective radius with height and suppressed and even prevented the initiation of warm rain while contributing to the development of ice hydrometeors in the form of graupel. Our results show that cloud condensation and ice nuclei were the limiting factors that controlled warm rain and ice processes, respectively, while the unpolluted clouds in the same air mass produced precipitation quite efficiently. These findings provide the motivation for deeper investigations into the nature of the aerosols seeding clouds.

  14. Automated identification of retinal vessels using a multiscale directional contrast quantification (MDCQ) strategy

    SciTech Connect (OSTI)

    Zhen, Yi; Zhang, Xinyuan; Wang, Ningli E-mail: puj@upmc.edu; Gu, Suicheng; Meng, Xin; Zheng, Bin; Pu, Jiantao E-mail: puj@upmc.edu

    2014-09-15

    Purpose: A novel algorithm is presented to automatically identify the retinal vessels depicted in color fundus photographs. Methods: The proposed algorithm quantifies the contrast of each pixel in retinal images at multiple scales and fuses the resulting consequent contrast images in a progressive manner by leveraging their spatial difference and continuity. The multiscale strategy is to deal with the variety of retinal vessels in width, intensity, resolution, and orientation; and the progressive fusion is to combine consequent images and meanwhile avoid a sudden fusion of image noise and/or artifacts in space. To quantitatively assess the performance of the algorithm, we tested it on three publicly available databases, namely, DRIVE, STARE, and HRF. The agreement between the computer results and the manual delineation in these databases were quantified by computing their overlapping in both area and length (centerline). The measures include sensitivity, specificity, and accuracy. Results: For the DRIVE database, the sensitivities in identifying vessels in area and length were around 90% and 70%, respectively, the accuracy in pixel classification was around 99%, and the precisions in terms of both area and length were around 94%. For the STARE database, the sensitivities in identifying vessels were around 90% in area and 70% in length, and the accuracy in pixel classification was around 97%. For the HRF database, the sensitivities in identifying vessels were around 92% in area and 83% in length for the healthy subgroup, around 92% in area and 75% in length for the glaucomatous subgroup, around 91% in area and 73% in length for the diabetic retinopathy subgroup. For all three subgroups, the accuracy was around 98%. Conclusions: The experimental results demonstrate that the developed algorithm is capable of identifying retinal vessels depicted in color fundus photographs in a relatively reliable manner.

  15. Direct optical measurement of the on-shot incoherent focal spot and intensity contrast on the OMEGA EP laser

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Dorrer, C.; Consentino, A.; Irwin, D.

    2016-05-18

    Characterizing the prepulse temporal contrast of optical pulses is required to understand their interaction with matter. Light with relatively low intensity can interact with the target before the main high-intensity pulse. Estimating the intensity contrast, instead of the spatially averaged power contrast, is important to understand intensity-dependent laser–matter interactions. A direct optical approach to determining the on-shot intensity of the incoherent pedestal on an aberrated high-intensity laser system is presented. The spatially resolved focal spot of the incoherent pedestal preceding the main coherent pulse and the intensity contrast are calculated using experimental data. Furthermore, this technique is experimentally validated onmore » one of the chirped pulse amplification beamlines of the OMEGA EP Laser System. The intensity contrast of a 1-kJ, 10-ps laser pulse is shown to be ~10× higher than the power contrast because of the larger spatial extent of the incoherent focal spot relative to the coherent focal spot.« less

  16. Anatomical noise in contrast-enhanced digital mammography. Part II. Dual-energy imaging

    SciTech Connect (OSTI)

    Hill, Melissa L.; Yaffe, Martin J.; Mainprize, James G.; Carton, Ann-Katherine; Saab-Puong, Sylvie; Iordache, R?zvan; Muller, Serge; Jong, Roberta A.; Dromain, Clarisse

    2013-08-15

    Purpose: Dual-energy (DE) contrast-enhanced digital mammography (CEDM) uses an iodinated contrast agent in combination with digital mammography (DM) to evaluate lesions on the basis of tumor angiogenesis. In DE imaging, low-energy (LE) and high-energy (HE) images are acquired after contrast administration and their logarithms are subtracted to cancel the appearance of normal breast tissue. Often there is incomplete signal cancellation in the subtracted images, creating a background clutter that can impair lesion detection. This is the second component of a two-part report on anatomical noise in CEDM. In Part I the authors characterized the anatomical noise for single-energy (SE) temporal subtraction CEDM by a power law, with model parameters ? and ?. In this work the authors quantify the anatomical noise in DE CEDM clinical images and compare this with the noise in SE CEDM. The influence on the anatomical noise of the presence of iodine in the breast, the timing of imaging postcontrast administration, and the x-ray energy used for acquisition are each evaluated.Methods: The power law parameters, ? and ?, were measured from unprocessed LE and HE images and from DE subtracted images to quantify the anatomical noise. A total of 98 DE CEDM cases acquired in a previous clinical pilot study were assessed. Conventional DM images from 75 of the women were evaluated for comparison with DE CEDM. The influence of the imaging technique on anatomical noise was determined from an analysis of differences between the power law parameters as measured in DM, LE, HE, and DE subtracted images for each subject.Results: In DE CEDM, weighted image subtraction lowers ? to about 1.1 from 3.2 and 3.1 in LE and HE unprocessed images, respectively. The presence of iodine has a small but significant effect in LE images, reducing ? by about 0.07 compared to DM, with ? unchanged. Increasing the x-ray energy, from that typical in DM to a HE beam, significantly decreases ? by about 2 10{sup ?5

  17. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L.; Hanrahan, Patrick

    2012-03-20

    In response to a user request, a computer generates a graphical user interface on a computer display. A schema information region of the graphical user interface includes multiple operand names, each operand name associated with one or more fields of a multi-dimensional database. A data visualization region of the graphical user interface includes multiple shelves. Upon detecting a user selection of the operand names and a user request to associate each user-selected operand name with a respective shelf in the data visualization region, the computer generates a visual table in the data visualization region in accordance with the associations between the operand names and the corresponding shelves. The visual table includes a plurality of panes, each pane having at least one axis defined based on data for the fields associated with a respective operand name.

  18. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L; Hanrahan, Patrick

    2015-03-03

    A computer displays a graphical user interface on its display. The graphical user interface includes a schema information region and a data visualization region. The schema information region includes multiple operand names, each operand corresponding to one or more fields of a multi-dimensional database that includes at least one data hierarchy. The data visualization region includes a columns shelf and a rows shelf. The computer detects user actions to associate one or more first operands with the columns shelf and to associate one or more second operands with the rows shelf. The computer generates a visual table in the data visualization region in accordance with the user actions. The visual table includes one or more panes. Each pane has an x-axis defined based on data for the one or more first operands, and each pane has a y-axis defined based on data for the one or more second operands.

  19. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L.; Hanrahan, Patrick

    2015-11-10

    A computer displays a graphical user interface on its display. The graphical user interface includes a schema information region and a data visualization region. The schema information region includes a plurality of fields of a multi-dimensional database that includes at least one data hierarchy. The data visualization region includes a columns shelf and a rows shelf. The computer detects user actions to associate one or more first fields with the columns shelf and to associate one or more second fields with the rows shelf. The computer generates a visual table in the data visualization region in accordance with the user actions. The visual table includes one or more panes. Each pane has an x-axis defined based on data for the one or more first fields, and each pane has a y-axis defined based on data for the one or more second fields.

  20. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L; Hanrahan, Patrick

    2014-04-29

    In response to a user request, a computer generates a graphical user interface on a computer display. A schema information region of the graphical user interface includes multiple operand names, each operand name associated with one or more fields of a multi-dimensional database. A data visualization region of the graphical user interface includes multiple shelves. Upon detecting a user selection of the operand names and a user request to associate each user-selected operand name with a respective shelf in the data visualization region, the computer generates a visual table in the data visualization region in accordance with the associations between the operand names and the corresponding shelves. The visual table includes a plurality of panes, each pane having at least one axis defined based on data for the fields associated with a respective operand name.

  1. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L.; Hanrahan, Patrick

    2011-02-01

    In response to a user request, a computer generates a graphical user interface on a computer display. A schema information region of the graphical user interface includes multiple operand names, each operand name associated with one or more fields of a multi-dimensional database. A data visualization region of the graphical user interface includes multiple shelves. Upon detecting a user selection of the operand names and a user request to associate each user-selected operand name with a respective shelf in the data visualization region, the computer generates a visual table in the data visualization region in accordance with the associations between the operand names and the corresponding shelves. The visual table includes a plurality of panes, each pane having at least one axis defined based on data for the fields associated with a respective operand name.

  2. A 3D Vector/Scalar Visualization and Particle Tracking Package

    Energy Science and Technology Software Center (OSTI)

    1999-08-19

    BOILERMAKER is an interactive visualization system consisting of three components: a visualization component, a particle tracking component, and a communication layer. The software, to date, has been used primarily in the visualization of vector and scalar fields associated with computational fluid dynamics (CFD) models of flue gas flows in industrial boilers and incinerators. Users can interactively request and toggle static vector fields, dynamic streamlines, and flowing vector fields. In addition, the user can interactively placemore » injector nozzles on boiler walls and visualize massed, evaporating sprays emanating from them. Some characteristics of the spray can be adjusted from within the visualization environment including spray shape and particle size. Also included with this release is software that supports 3D menu capabilities, scrollbars, communication and navigation.« less

  3. An Assessment of Remote Visual Testing System Capabilities for the Detection of Service Induced Cracking

    SciTech Connect (OSTI)

    Anderson, Michael T.; Cumblidge, Stephen E.; Doctor, Steven R.

    2005-09-01

    Remote visual testing is typically employed to ascertain the condition of materials in components that are inaccessible for direct examination. In the power and petrochemical industries, remote visual testing is used to assess whether service-related degradation is being manifested that, if left unchecked, may eventually impair the structural reliability of a component. Several codes and standards require that visual examinations be periodically conducted. Many of these inspections must be performed remotely due to harsh environments or design geometries of the subject components. This paper describes the attributes and limitations of remote visual testing, performance demonstration standards for camera systems, typical dimensions for service-induced cracking phenomena, and an assessment of the reliability of remote video camera systems at finding cracks. Because many forms of service-induced cracks have very small crack opening dimensions, the reliability of remote visual testing may not be adequate to ensure component integrity, given the capabilities of current camera systems and application practices.

  4. SEM technique for imaging and measuring electronic transport in nanocomposites based on electric field induced contrast

    DOE Patents [OSTI]

    Jesse, Stephen [Knoxville, TN; Geohegan, David B. [Knoxville, TN; Guillorn, Michael [Brooktondale, NY

    2009-02-17

    Methods and apparatus are described for SEM imaging and measuring electronic transport in nanocomposites based on electric field induced contrast. A method includes mounting a sample onto a sample holder, the sample including a sample material; wire bonding leads from the sample holder onto the sample; placing the sample holder in a vacuum chamber of a scanning electron microscope; connecting leads from the sample holder to a power source located outside the vacuum chamber; controlling secondary electron emission from the sample by applying a predetermined voltage to the sample through the leads; and generating an image of the secondary electron emission from the sample. An apparatus includes a sample holder for a scanning electron microscope having an electrical interconnect and leads on top of the sample holder electrically connected to the electrical interconnect; a power source and a controller connected to the electrical interconnect for applying voltage to the sample holder to control the secondary electron emission from a sample mounted on the sample holder; and a computer coupled to a secondary electron detector to generate images of the secondary electron emission from the sample.

  5. Chemistry of Tantalum Clusters in Solution And on SiO(2) Supports: Analogies And Contrasts

    SciTech Connect (OSTI)

    Nemana, S.; Okamoto, N.L.; Browning, N.D.; Gates, B.C.

    2009-06-03

    Tantalum clusters have been synthesized from Ta(CH{sub 2}Ph){sub 5} on the surface of porous fumed SiO{sub 2}. When these clusters are small, incorporating, on average, several Ta atoms, their chemistry is similar to that of molecular tantalum clusters (and other early transition-metal) clusters. For example, The Ta-Ta bonds in these small supported clusters have been characterized by extended X-ray absorption fine structure (EXAFS), IR, and UV-vis spectroscopy, being similar to those in molecular analogues. The redox reactions of the supported clusters, characterized by X-ray absorption near-edge structure, are analogous to those of early transition-metal clusters in solution. In contrast to the largest of these clusters in solution and in the solid state, those supported on SiO{sub 2} are raftlike, facilitating the substantial metal-support-oxygen bonding that is evident in the EXAFS spectra. Samples consisting of tantalum clusters on SiO{sub 2} catalyze alkane disproportionation and the conversion of methane with n-butane to give other alkanes, but catalytic properties of analogous clusters in solution have barely been explored.

  6. When will low-contrast features be visible in a STEM X-ray spectrum image?

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Parish, Chad M.

    2015-02-03

    When will a small or low-contrast feature, such as an embedded second-phase particle, be visible in a scanning transmission electron microscopy (STEM) X-ray map? This work illustrates a computationally inexpensive method to simulate X-ray maps and spectrum images (SIs), based upon the equations of X-ray generation and detection. To particularize the general procedure, an example of nanostructured ferritic alloy (NFA) containing nm-sized Y2Ti2O7 embedded precipitates in ferritic stainless steel matrix is chosen. The proposed model produces physically appearing simulated SI data sets, which can either be reduced to X-ray dot maps or analyzed via multivariate statistical analysis. Comparison to NFAmore » X-ray maps acquired using three different STEM instruments match the generated simulations quite well, despite the large number of simplifying assumptions used. A figure of merit of electron dose multiplied by X-ray collection solid angle is proposed to compare feature detectability from one data set (simulated or experimental) to another. The proposed method can scope experiments that are feasible under specific analysis conditions on a given microscope. As a result, future applications, such as spallation proton–neutron irradiations, core-shell nanoparticles, or dopants in polycrystalline photovoltaic solar cells, are proposed.« less

  7. When will low-contrast features be visible in a STEM X-ray spectrum image?

    SciTech Connect (OSTI)

    Parish, Chad M.

    2015-02-03

    When will a small or low-contrast feature, such as an embedded second-phase particle, be visible in a scanning transmission electron microscopy (STEM) X-ray map? This work illustrates a computationally inexpensive method to simulate X-ray maps and spectrum images (SIs), based upon the equations of X-ray generation and detection. To particularize the general procedure, an example of nanostructured ferritic alloy (NFA) containing nm-sized Y2Ti2O7 embedded precipitates in ferritic stainless steel matrix is chosen. The proposed model produces physically appearing simulated SI data sets, which can either be reduced to X-ray dot maps or analyzed via multivariate statistical analysis. Comparison to NFA X-ray maps acquired using three different STEM instruments match the generated simulations quite well, despite the large number of simplifying assumptions used. A figure of merit of electron dose multiplied by X-ray collection solid angle is proposed to compare feature detectability from one data set (simulated or experimental) to another. The proposed method can scope experiments that are feasible under specific analysis conditions on a given microscope. As a result, future applications, such as spallation proton–neutron irradiations, core-shell nanoparticles, or dopants in polycrystalline photovoltaic solar cells, are proposed.

  8. Visualizing Safeguards: Software for Conceptualizing and Communicating Safeguards Data

    SciTech Connect (OSTI)

    Gallucci, N.

    2015-07-12

    The nuclear programs of states are complex and varied, comprising a wide range of fuel cycles and facilities. Also varied are the types and terms of states’ safeguards agreements with the IAEA, each placing different limits on the inspectorate’s access to these facilities. Such nuances make it difficult to draw policy significance from the ground-level nuclear activities of states, or to attribute ground-level outcomes to the implementation of specific policies or initiatives. While acquiring a firm understanding of these relationships is critical to evaluating and formulating effective policy, doing so requires collecting and synthesizing large bodies of information. Maintaining a comprehensive working knowledge of the facilities comprising even a single state’s nuclear program poses a challenge, yet marrying this information with relevant safeguards and verification information is more challenging still. To facilitate this task, Brookhaven National Laboratory has developed a means of capturing the development, operation, and safeguards history of all the facilities comprising a state’s nuclear program in a single graphic. The resulting visualization offers a useful reference tool to policymakers and analysts alike, providing a chronology of states’ nuclear development and an easily digestible history of verification activities across their fuel cycles.

  9. Different understanding: science through the eyes of visual thinkers

    SciTech Connect (OSTI)

    Sesko, S.C.; Marchant, M.

    1997-09-11

    The objective of this emergent study was to follow the cognitive and creative processes demonstrated by five art student participants as they integrated a developing knowledge of big science, as practiced at the Department of Energy`s Lawrence Livermore National Laboratory, into a personal and idiosyncratic visual, graphical, or multimedia product. The non-scientist participants involved in this process attended design classes sponsored by the Laboratory at the Art Center College of Design in California. The learning experience itself, and how the students arrived at their product, were the focus of the class and the research. The study was emergent in that we found no applicable literature on the use of art to portray a cognitive understanding of science. This lack of literature led us to the foundation literature on creativity and to the corpus of literature on public understanding of science. We believe that this study contributes to the literature on science education, art education, cognitive change, and public understanding of science. 20 refs., 11 figs.

  10. Visualization for Hyper-Heuristics: Back-End Processing

    SciTech Connect (OSTI)

    Simon, Luke

    2015-03-01

    Modern society is faced with increasingly complex problems, many of which can be formulated as generate-and-test optimization problems. Yet, general-purpose optimization algorithms may sometimes require too much computational time. In these instances, hyperheuristics may be used. Hyper-heuristics automate the design of algorithms to create a custom algorithm for a particular scenario, finding the solution significantly faster than its predecessor. However, it may be difficult to understand exactly how a design was derived and why it should be trusted. This project aims to address these issues by creating an easy-to-use graphical user interface (GUI) for hyper-heuristics and an easy-to-understand scientific visualization for the produced solutions. To support the development of this GUI, my portion of the research involved developing algorithms that would allow for parsing of the data produced by the hyper-heuristics. This data would then be sent to the front-end, where it would be displayed to the end user.

  11. TU-A-18A-01: Basic Principles of PET/CT, Calibration Methods and Contrast Recovery Across Multiple Cameras

    SciTech Connect (OSTI)

    Kappadath, S; Nye, J

    2014-06-15

    This continuing education session will discuss the physical principles of PET/CT imaging and characterization of contrast recovery using accreditation phantoms. A detailed overview will be given on the physical principles of PET including positron decay physics, 2D and 3D data acquisition, time-of-flight, scatter correction, CT attenuation correction, and image reconstruction. Instrument quality control and calibration procedures will be discussed. Technical challenges, common image artifacts and strategies to mitigate these issues will also be discussed. Data will be presented on acquisition techniques and reconstruction parameters affecting contrast recovery. The discussion will emphasize the minimization of reconstruction differences in quantification metrics such as SUV and contrast recovery coefficients for the NEMA and ACR clinical trial phantoms. Data from new and older generation scanners will be shown including comparison of contrast recovery measurements to their analytical solutions. The goal of this session is to update attendees on the quality control and calibration of PET/CT scanners, on methods to establish a common calibration for PET/CT scanners to control for instrument variance across multiple sites. Learning Objectives: Review the physical principles of PET/CT, quality control and calibration Gain further understanding on how to apply techniques for improving quantitative agreement across multiple cameras Describe the differences between measured and expected contrast recovery for the NEMA and ACR PET phantoms.

  12. SU-E-T-56: Brain Metastasis Treatment Plans for Contrast-Enhanced Synchrotron Radiation Therapy

    SciTech Connect (OSTI)

    Obeid, L; Adam, J; Tessier, A; Vautrin, M; Benkebil, M; Sihanath, R

    2014-06-01

    Purpose: Iodine-enhanced radiotherapy is an innovative treatment combining the selective accumulation of an iodinated contrast agent in brain tumors with irradiations using monochromatic medium energy x-rays. The aim of this study is to compare dynamic stereotactic arc-therapy and iodineenhanced SSRT. Methods: Five patients bearing brain metastasis received a standard helical 3D-scan without iodine. A second scan was acquired 13 min after an 80 g iodine infusion. Two SSRT treatment plans (with/without iodine) were performed for each patient using a dedicated Monte Carlo (MC) treatment planning system (TPS) based on the ISOgray TPS. Ten coplanar beams (6×6 cm2, shaped with collimator) were simulated. MC statistical error objective was less than 5% in the 50% isodose. The dynamic arc-therapy plan was achieved on the Iplan Brainlab TPS. The treatment plan validation criteria were fixed such that 100% of the prescribed dose is delivered at the beam isocentre and the 70% isodose contains the whole target volume. The comparison elements were the 70% isodose volume, the average and maximum doses delivered to organs at risk (OAR): brainstem, optical nerves, chiasma, eyes, skull bone and healthy brain parenchyma. Results: The stereotactic dynamic arc-therapy remains the best technique in terms of dose conformation. Iodine-enhanced SSRT presents similar performances to dynamic arc-therapy with increased brainstem and brain parenchyma sparing. One disadvantage of SSRT is the high dose to the skull bone. Iodine accumulation in metastasis may increase the dose by 20–30%, allowing a normal tissue sparing effect at constant prescribed dose. Treatment without any iodine enhancement (medium-energy stereotactic radiotherapy) is not relevant with degraded HDVs (brain, parenchyma and skull bone) comparing to stereotactic dynamic arc-therapy. Conclusion: Iodine-enhanced SSRT exhibits a good potential for brain metastasis treatment regarding the dose distribution and OAR criteria.

  13. Contrasting impacts of localised versus catastrophic oil spills in coastal wetlands

    SciTech Connect (OSTI)

    Burns, K.A.; Codi, S.

    1996-12-31

    A localised oil spill was observed on the wetland marshes bordering a tidal creek near Cairns, Queensland in January 1994. Pollution and conservation issues are of paramount public concern in this region which boarders World Heritage Areas of coral reefs and coastal habitats. Local residents observed oil being dumped from a truck which was contracted to of oil the surface of the roads in the contiguous sugar cane farm for dust control. During this incident several truckloads of mixed waste oil were dumped onto a short section of road and into the wetlands. The oil contaminated a band of marsh 15-30 m wide along approximately 200 m of road. Impacted marsh included Melaleuca forest on the high side of the road and intertidal mangroves on the seaward side. The Queensland Department of Environment (QDE) initiated an impact assessment and directed the trucking company to clean up impacted areas. The extent of damage to wetlands from oil spills is related to the amount and type of oil spilled and the sensitivity of the habitats oiled. QDE asked the Australian Institute of Marine Sciences to assist with their study on the fate of the oil in this localised spill. The initial levels of petroleum hydrocarbons in surface sediments reached 17% of the dry weight in heavily impacted areas. Thus levels were similar to those reached after the catastrophic oil spill in Panama. Clean up efforts and natural dissipation processes reduced sediment hydrocarbon loads to nonacutely toxic levels in only 1.5 years in the intertidal mangroves. High levels remain in the Melaleuca sediments. We used internal molecular markers to detail hydrocarbon dissipation vs degradation. This study provides a contrast between impacts of localised versus catastrophic oil spills in deep mud coastal habitats.

  14. Facies distributions within contrasting structural components of a rift lake: Lake Tanganyika, Africa

    SciTech Connect (OSTI)

    Soreghan, M.J.; Cohen, A.S. )

    1991-03-01

    Lake Tanganyika is the most widely cited modern analog for interpreting ancient rift lakes; thus, understanding controls on its facies distribution is critical for refining stratigraphic models for rifts. Four recurrent margin types occur along the alternating half-graben structure of the lake: rift axes, platforms, escarpments, and accommodation zones. Data from study sites in the northern part of the lake suggest that predictable facies differences exist between these structural margin types. The rift axis site comprises a low-gradient, clastic (wave/current)-dominated deltaic system, with strong facies asymmetry and minor carbonate accumulations on raised benches. The platform margin site comprises a series of structurally controlled benches over which long, continuous facies tracts occur. Carbonate sands, muds, and shell gravel dominate; clastics are limited to moderate-sized silty deltas and long, narrow shoreface sands. The escarpment margin site is a steep-gradient system along which small ({lt}1 km{sup 2}) fan deltas alternate with cemented talus. The accommodation zone margin sites are also dominated by rugged structural relief, generally small fan deltas, and semicontinuous shoreface sand belts ({gt}5 km) onshore and poorly sorted silts offshore. TOC from fine-grained samples reflects the contrast in margin types. TOC values for the platform and rift axis range from 0.4 - 2.1 wt. % (avg. 1.3%), whereas accommodation zone and escarpment margin values range from 0.5-5.5% (avg. 3.0%). Acid insoluble sulfur shows a similar trend. Although all data are significantly correlated with depth, the relative area of the lake margin above and below the oxicline is directly controlled by the structural style of the lake margin.

  15. Reverse-Contrast Imaging and Targeted Radiation Therapy of Advanced Pancreatic Cancer Models

    SciTech Connect (OSTI)

    Thorek, Daniel L.J.; Kramer, Robin M.; Chen, Qing; Jeong, Jeho; Lupu, Mihaela E.; Lee, Alycia M.; Moynahan, Mary E.; Lowery, Maeve; Ulmert, David; Zanzonico, Pat; Deasy, Joseph O.; Humm, John L.; Russell, James

    2015-10-01

    Purpose: To evaluate the feasibility of delivering experimental radiation therapy to tumors in the mouse pancreas. Imaging and treatment were performed using combined CT (computed tomography)/orthovoltage treatment with a rotating gantry. Methods and Materials: After intraperitoneal administration of radiopaque iodinated contrast, abdominal organ delineation was performed by x-ray CT. With this technique we delineated the pancreas and both orthotopic xenografts and genetically engineered disease. Computed tomographic imaging was validated by comparison with magnetic resonance imaging. Therapeutic radiation was delivered via a 1-cm diameter field. Selective x-ray radiation therapy of the noninvasively defined orthotopic mass was confirmed using γH2AX staining. Mice could tolerate a dose of 15 Gy when the field was centered on the pancreas tail, and treatment was delivered as a continuous 360° arc. This strategy was then used for radiation therapy planning for selective delivery of therapeutic x-ray radiation therapy to orthotopic tumors. Results: Tumor growth delay after 15 Gy was monitored, using CT and ultrasound to determine the tumor volume at various times after treatment. Our strategy enables the use of clinical radiation oncology approaches to treat experimental tumors in the pancreas of small animals for the first time. We demonstrate that delivery of 15 Gy from a rotating gantry minimizes background healthy tissue damage and significantly retards tumor growth. Conclusions: This advance permits evaluation of radiation planning and dosing parameters. Accurate noninvasive longitudinal imaging and monitoring of tumor progression and therapeutic response in preclinical models is now possible and can be expected to more effectively evaluate pancreatic cancer disease and therapeutic response.

  16. Energy-loss- and thickness-dependent contrast in atomic-scale electron energy-loss spectroscopy

    SciTech Connect (OSTI)

    Tan, Haiyan; Zhu, Ye; Dwyer, Christian; Xin, Huolin L.

    2014-12-31

    Atomic-scale elemental maps of materials acquired by core-loss inelastic electron scattering often exhibit an undesirable sensitivity to the unavoidable elastic scattering, making the maps counter-intuitive to interpret. Here, we present a systematic study that scrutinizes the energy-loss and sample-thickness dependence of atomic-scale elemental maps acquired using 100 keV incident electrons in a scanning transmission electron microscope. For single-crystal silicon, the balance between elastic and inelastic scattering means that maps generated from the near-threshold Si-L signal (energy loss of 99 eV) show no discernible contrast for a thickness of 0.5? (? is the electron mean-free path, here approximately 110 nm). At greater thicknesses we observe a counter-intuitive negative contrast. Only at much higher energy losses is an intuitive positive contrast gradually restored. Our quantitative analysis shows that the energy-loss at which a positive contrast is restored depends linearly on the sample thickness. This behavior is in very good agreement with our double-channeling inelastic scattering calculations. We test a recently-proposed experimental method to correct the core-loss inelastic scattering and restore an intuitive positive chemical contrast. The method is demonstrated to be reliable over a large range of energy losses and sample thicknesses. The corrected contrast for near-threshold maps is demonstrated to be (desirably) inversely proportional to sample thickness. As a result, implications for the interpretation of atomic-scale elemental maps are discussed.

  17. Energy-loss- and thickness-dependent contrast in atomic-scale electron energy-loss spectroscopy

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Tan, Haiyan; Zhu, Ye; Dwyer, Christian; Xin, Huolin L.

    2014-12-31

    Atomic-scale elemental maps of materials acquired by core-loss inelastic electron scattering often exhibit an undesirable sensitivity to the unavoidable elastic scattering, making the maps counter-intuitive to interpret. Here, we present a systematic study that scrutinizes the energy-loss and sample-thickness dependence of atomic-scale elemental maps acquired using 100 keV incident electrons in a scanning transmission electron microscope. For single-crystal silicon, the balance between elastic and inelastic scattering means that maps generated from the near-threshold Si-L signal (energy loss of 99 eV) show no discernible contrast for a thickness of 0.5λ (λ is the electron mean-free path, here approximately 110 nm). Atmore » greater thicknesses we observe a counter-intuitive “negative” contrast. Only at much higher energy losses is an intuitive “positive” contrast gradually restored. Our quantitative analysis shows that the energy-loss at which a positive contrast is restored depends linearly on the sample thickness. This behavior is in very good agreement with our double-channeling inelastic scattering calculations. We test a recently-proposed experimental method to correct the core-loss inelastic scattering and restore an intuitive “positive” chemical contrast. The method is demonstrated to be reliable over a large range of energy losses and sample thicknesses. The corrected contrast for near-threshold maps is demonstrated to be (desirably) inversely proportional to sample thickness. As a result, implications for the interpretation of atomic-scale elemental maps are discussed.« less

  18. A grating-based single-shot x-ray phase contrast and diffraction method for in vivo imaging

    SciTech Connect (OSTI)

    Bennett, Eric E.; Kopace, Rael; Stein, Ashley F.; Wen Han

    2010-11-15

    Purpose: The purpose of this study is to develop a single-shot version of the grating-based phase contrast x-ray imaging method and demonstrate its capability of in vivo animal imaging. Here, the authors describe the principle and experimental results. They show the source of artifacts in the phase contrast signal and optimal designs that minimize them. They also discuss its current limitations and ways to overcome them. Methods: A single lead grid was inserted midway between an x-ray tube and an x-ray camera in the planar radiography setting. The grid acted as a transmission grating and cast periodic dark fringes on the camera. The camera had sufficient spatial resolution to resolve the fringes. Refraction and diffraction in the imaged object manifested as position shifts and amplitude attenuation of the fringes, respectively. In order to quantify these changes precisely without imposing a fixed geometric relationship between the camera pixel array and the fringes, a spatial harmonic method in the Fourier domain was developed. The level of the differential phase (refraction) contrast as a function of hardware specifications and device geometry was derived and used to guide the optimal placement of the grid and object. Both ex vivo and in vivo images of rodent extremities were collected to demonstrate the capability of the method. The exposure time using a 50 W tube was 28 s. Results: Differential phase contrast images of glass beads acquired at various grid and object positions confirmed theoretical predictions of how phase contrast and extraneous artifacts vary with the device geometry. In anesthetized rats, a single exposure yielded artifact-free images of absorption, differential phase contrast, and diffraction. Differential phase contrast was strongest at bone-soft tissue interfaces, while diffraction was strongest in bone. Conclusions: The spatial harmonic method allowed us to obtain absorption, differential phase contrast, and diffraction images, all from a

  19. Vibrational dynamics of zero-field-splitting hamiltonian in gadolinium-based MRI contrast agents from ab initio molecular dynamics

    SciTech Connect (OSTI)

    Lasoroski, Aurélie; Vuilleumier, Rodolphe; Pollet, Rodolphe

    2014-07-07

    The electronic relaxation of gadolinium complexes used as MRI contrast agents was studied theoretically by following the short time evolution of zero-field-splitting parameters. The statistical analysis of ab initio molecular dynamics trajectories provided a clear separation between static and transient contributions to the zero-field-splitting. For the latter, the correlation time was estimated at approximately 0.1 ps. The influence of the ligand was also probed by replacing one pendant arm of our reference macrocyclic complex by a bulkier phosphonate arm. In contrast to the transient contribution, the static zero-field-splitting was significantly influenced by this substitution.

  20. Quantitative evaluation of single-shot inline phase contrast imaging using an inverse compton x-ray source

    SciTech Connect (OSTI)

    Oliva, P.; Carpinelli, M.; Golosio, B.; Delogu, P.; Endrizzi, M.; Park, J.; Pogorelsky, I.; Yakimenko, V.; Williams, O.; Rosenzweig, J.

    2010-09-27

    Inverse compton scattering (ICS) x-ray sources are of current interest in biomedical imaging. We present an experimental demonstration of inline phase contrast imaging using a single picosecond pulse of the ICS source located at the BNL Accelerator Test Facility. The phase contrast effect is clearly observed. Its qualities are shown to be in agreement with the predictions of theoretical models through comparison of experimental and simulated images of a set of plastic wires of differing composition and size. Finally, we display an application of the technique to a biological sample, confirming the possibility of time-resolved imaging on the picosecond scale.

  1. Experiments at Scale with In-Situ Visualization Using ParaView/Catalyst in RAGE

    SciTech Connect (OSTI)

    Kares, Robert John

    2014-10-31

    In this paper I describe some numerical experiments performed using the ParaView/Catalyst in-situ visualization infrastructure deployed in the Los Alamos RAGE radiation-hydrodynamics code to produce images from a running large scale 3D ICF simulation on the Cielo supercomputer at Los Alamos. The detailed procedures for the creation of the visualizations using ParaView/Catalyst are discussed and several images sequences from the ICF simulation problem produced with the in-situ method are presented. My impressions and conclusions concerning the use of the in-situ visualization method in RAGE are discussed.

  2. VTK-m: Accelerating the Visualization Toolkit for Massively Threaded Architectures

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Moreland, Kenneth; Sewell, Christopher; Usher, William; Lo, Li-ta; Meredith, Jeremy; Pugmire, David; Kress, James; Schroots, Hendrik; Ma, Kwan-Liu; Childs, Hank; et al

    2016-05-01

    Execution on massively threaded processors is one of the most critical challenges for high-performance computing (HPC) scientific visualization. Of the many fundamental changes we are seeing in HPC systems, one of the most profound is a reliance on new processor types optimized for execution bandwidth over latency hiding. Moreover, our current production scientific visualization software is not designed for these new types of architectures. In order to address this issue, the VTK-m framework serves as a container for algorithms, provides flexible data representation, and simplifies the design of visualization algorithms on new and future computer architecture.

  3. A Visual Analytics Approach to Structured Data Analysis to Enhance Nonproliferation and Arms Control Verification Activities

    SciTech Connect (OSTI)

    Gillen, David S.

    2014-08-07

    Analysis activities for Nonproliferation and Arms Control verification require the use of many types of data. Tabular structured data, such as Excel spreadsheets and relational databases, have traditionally been used for data mining activities, where specific queries are issued against data to look for matching results. The application of visual analytics tools to structured data enables further exploration of datasets to promote discovery of previously unknown results. This paper discusses the application of a specific visual analytics tool to datasets related to the field of Arms Control and Nonproliferation to promote the use of visual analytics more broadly in this domain. Visual analytics focuses on analytical reasoning facilitated by interactive visual interfaces (Wong and Thomas 2004). It promotes exploratory analysis of data, and complements data mining technologies where known patterns can be mined for. Also with a human in the loop, they can bring in domain knowledge and subject matter expertise. Visual analytics has not widely been applied to this domain. In this paper, we will focus on one type of data: structured data, and show the results of applying a specific visual analytics tool to answer questions in the Arms Control and Nonproliferation domain. We chose to use the T.Rex tool, a visual analytics tool developed at PNNL, which uses a variety of visual exploration patterns to discover relationships in structured datasets, including a facet view, graph view, matrix view, and timeline view. The facet view enables discovery of relationships between categorical information, such as countries and locations. The graph tool visualizes node-link relationship patterns, such as the flow of materials being shipped between parties. The matrix visualization shows highly correlated categories of information. The timeline view shows temporal patterns in data. In this paper, we will use T.Rex with two different datasets to demonstrate how interactive exploration of

  4. Selection of higher eigenmode amplitude based on dissipated power and virial contrast in bimodal atomic force microscopy

    SciTech Connect (OSTI)

    Diaz, Alfredo J.; Eslami, Babak; Lpez-Guerra, Enrique A.; Solares, Santiago D.

    2014-09-14

    This paper explores the effect of the amplitude ratio of the higher to the fundamental eigenmode in bimodal atomic force microscopy (AFM) on the phase contrast and the dissipated power contrast of the higher eigenmode. We explore the optimization of the amplitude ratio in order to maximize the type of contrast that is most relevant to the particular study. Specifically, we show that the trends in the contrast range behave differently for different quantities, especially the dissipated power and the phase, with the former being more meaningful than the latter (a similar analysis can be carried out using the virial, for which we also provide a brief example). Our work is based on numerical simulations using two different conservative-dissipative tip-sample models, including the standard linear solid and the combination of a dissipation coefficient with a conservative model, as well as experimental images of thin film Nafion{sup } proton exchange polymers. We focus on the original bimodal AFM method, where the higher eigenmode is driven with constant amplitude and frequency (i.e., in open loop).

  5. VISUAL STEP-BY-STEP INSTRUCTIONS ON HOW TO APPLY FOR A JOB ON...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    VISUAL STEP-BY-STEP INSTRUCTIONS ON HOW TO APPLY FOR A JOB ON THE USAJOBS WEBSITE (These instructions also explain the differences between DEU and MP.) STEP 1: Locate the USAJOBS...

  6. Corridor One: An Integrated Distance Visualization Environment for SSI and ASCI Applications

    SciTech Connect (OSTI)

    Rick Stevens; Jason Leigh

    2002-07-14

    Scenarios describe realistic uses of DVC/Distance technologies in several years. Four scenarios are described: Distributed Decision Making; Remote Interactive Computing; Remote Visualization: (a) Remote Immersive Visualization and (b) Remote Scientific Visualization; Remote Virtual Prototyping. Scenarios serve as drivers for the road maps and enable us to check that the functionality and technology in the road maps match application needs. There are four major DVC/Distance technology areas we cover: Networking and QoS; Remote Computing; Remote Visualization; Remote Data. Each ??road map? consists of two parts, a ??functionality? matrix (what can be done) and a ??technology? matrix (underlying technology). That is, functionality matrices show the desired operational characteristics, while technology matrices show the underlying technology needed. In practice, there isn??t always a clean break between ??functionality? and ??technology,? but it still seems useful to try and separate things this way.

  7. A Five-dimensional Visualization of the Pressure-induced Phase...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    A Five-dimensional Visualization of the Pressure-induced Phase Transition in BiNiO3 Friday, February 28, 2014 Figure 1. Illustration of the nanoscopic study of a BiNiO3 particle...

  8. Building Technologies Program: Tax Deduction Qualified Software- VisualDOE version 4.1 build 0002

    Broader source: Energy.gov [DOE]

    Provides required documentation that VisualDOE version 4.1 build 0002 meets Internal Revenue Code §179D, Notice 2006-52, dated June 2, 2006, for calculating commercial building energy and power cost savings.

  9. Webinar: DetecTape – A Localized Visual Detector for Hydrogen Leaks

    Broader source: Energy.gov [DOE]

    The Energy Department will present a live webinar titled "DetecTape – A Localized Visual Detector for Hydrogen Leaks" on Monday, March 14, from 12 to 1 p.m. Eastern Daylight Time.

  10. vtkPNetCDFPOPReader: a new C++ class for Visualization Toolkit (VTK)

    Energy Science and Technology Software Center (OSTI)

    2011-08-03

    VTK is a software library used for scientific visualization tasks. My specific contribution is a new class that improves the I/O performance when reading certain input files.

  11. Modification to the Monte Carlo N-Particle (MCNP) Visual Editor...

    Office of Scientific and Technical Information (OSTI)

    of the MCNP Visual Editor to allow it to read in both 2D and 3D Computer Aided Design (CAD) files, allowing the user to electronically generate a valid MCNP input geometry. ...

  12. DetecTape – A Localized Visual Detector for Hydrogen Leaks Webinar

    Broader source: Energy.gov [DOE]

    Access the recording and download the presentation slides from the Fuel Cell Technologies Office webinar "DetecTape – A Localized Visual Detector for Hydrogen Leaks" held on March 14, 2016.

  13. Performance, power, and energy of in-situ and post-processing visualization

    SciTech Connect (OSTI)

    Adhinarayanan, Vignesh

    2015-10-05

    The goal of this project was to "study the performance, power, and energy trade-offs among traditional post-processing, modern post-processing, and in-situ visualization pipelines."

  14. Visualization of the Mode Shapes of Pressure Oscillation in a Cylindrical Cavity

    SciTech Connect (OSTI)

    He, Xin; Qi, Yunliang; Wang, Zhi; Wang, Jianxin; Shuai, Shijin; Tao, Ling

    2015-06-08

    Our work describes a novel experimental method to visualize the mode shapes of pressure oscillation in a cylindrical cavity. Acoustic resonance in a cavity is a grand old problem that has been under investigation (using both analytical and numerical methods) for more than a century. In this article, a novel method based on high speed imaging of combustion chemiluminescence was presented to visualize the mode shapes of pressure oscillation in a cylindrical cavity. By generating high-temperature combustion gases and strong pressure waves simultaneously in a cylindrical cavity, the pressure oscillation can be inferred due to the chemiluminescence emissions of the combustion products. We can then visualized the mode shapes by reconstructing the images based on the amplitudes of the luminosity spectrum at the corresponding resonant frequencies. Up to 11 resonant mode shapes were clearly visualized, each matching very well with the analytical solutions.

  15. Direct Visualization of Catalytically Active Sites at the FeO...

    Office of Scientific and Technical Information (OSTI)

    Citation Details In-Document Search Title: Direct Visualization of Catalytically Active Sites at the FeO-Pt(111) Interface Within the area of surface science, one of the "holy ...

  16. Visualizations, Screen Shots, and Data Input Files from VisIT

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    VisIt is a free interactive parallel visualization and graphical analysis tool for viewing scientific data on Unix and PC platforms. Users can quickly generate visualizations from their data, animate them through time, manipulate them, and save the resulting images for presentations. VisIt contains a rich set of visualization features so that you can view your data in a variety of ways. It can be used to visualize scalar and vector fields defined on two- and three-dimensional (2D and 3D) structured and unstructured meshes. VisIt was designed to handle very large data set sizes in the terascale range and yet can also handle small data sets in the kilobyte range. The VisIT website provides a gallery of vizualizations, another set of screen shots, and allows downloads of data files for input and source codes and executables for the VisIT software suite.

  17. Technical Note: Measuring contrast- and noise-dependent spatial resolution of an iterative reconstruction method in CT using ensemble averaging

    SciTech Connect (OSTI)

    Yu, Lifeng Vrieze, Thomas J.; Leng, Shuai; Fletcher, Joel G.; McCollough, Cynthia H.

    2015-05-15

    Purpose: The spatial resolution of iterative reconstruction (IR) in computed tomography (CT) is contrast- and noise-dependent because of the nonlinear regularization. Due to the severe noise contamination, it is challenging to perform precise spatial-resolution measurements at very low-contrast levels. The purpose of this study was to measure the spatial resolution of a commercially available IR method using ensemble-averaged images acquired from repeated scans. Methods: A low-contrast phantom containing three rods (7, 14, and 21 HU below background) was scanned on a 128-slice CT scanner at three dose levels (CTDI{sub vol} = 16, 8, and 4 mGy). Images were reconstructed using two filtered-backprojection (FBP) kernels (B40 and B20) and a commercial IR method (sinogram affirmed iterative reconstruction, SAFIRE, Siemens Healthcare) with two strength settings (I40-3 and I40-5). The same scan was repeated 100 times at each dose level. The modulation transfer function (MTF) was calculated based on the edge profile measured on the ensemble-averaged images. Results: The spatial resolution of the two FBP kernels, B40 and B20, remained relatively constant across contrast and dose levels. However, the spatial resolution of the two IR kernels degraded relative to FBP as contrast or dose level decreased. For a given dose level at 16 mGy, the MTF{sub 50%} value normalized to the B40 kernel decreased from 98.4% at 21 HU to 88.5% at 7 HU for I40-3 and from 97.6% to 82.1% for I40-5. At 21 HU, the relative MTF{sub 50%} value decreased from 98.4% at 16 mGy to 90.7% at 4 mGy for I40-3 and from 97.6% to 85.6% for I40-5. Conclusions: A simple technique using ensemble averaging from repeated CT scans can be used to measure the spatial resolution of IR techniques in CT at very low contrast levels. The evaluated IR method degraded the spatial resolution at low contrast and high noise levels.

  18. RVA. 3-D Visualization and Analysis Software to Support Management of Oil and Gas Resources

    SciTech Connect (OSTI)

    Keefer, Donald A.; Shaffer, Eric G.; Storsved, Brynne; Vanmoer, Mark; Angrave, Lawrence; Damico, James R.; Grigsby, Nathan

    2015-12-01

    A free software application, RVA, has been developed as a plugin to the US DOE-funded ParaView visualization package, to provide support in the visualization and analysis of complex reservoirs being managed using multi-fluid EOR techniques. RVA, for Reservoir Visualization and Analysis, was developed as an open-source plugin to the 64 bit Windows version of ParaView 3.14. RVA was developed at the University of Illinois at Urbana-Champaign, with contributions from the Illinois State Geological Survey, Department of Computer Science and National Center for Supercomputing Applications. RVA was designed to utilize and enhance the state-of-the-art visualization capabilities within ParaView, readily allowing joint visualization of geologic framework and reservoir fluid simulation model results. Particular emphasis was placed on enabling visualization and analysis of simulation results highlighting multiple fluid phases, multiple properties for each fluid phase (including flow lines), multiple geologic models and multiple time steps. Additional advanced functionality was provided through the development of custom code to implement data mining capabilities. The built-in functionality of ParaView provides the capacity to process and visualize data sets ranging from small models on local desktop systems to extremely large models created and stored on remote supercomputers. The RVA plugin that we developed and the associated User Manual provide improved functionality through new software tools, and instruction in the use of ParaView-RVA, targeted to petroleum engineers and geologists in industry and research. The RVA web site (http://rva.cs.illinois.edu) provides an overview of functions, and the development web site (https://github.com/shaffer1/RVA) provides ready access to the source code, compiled binaries, user manual, and a suite of demonstration data sets. Key functionality has been included to support a range of reservoirs visualization and analysis needs, including

  19. Ultrafast X-ray Phase-Enhanced Microimaging for Visualizing Fuel Injection

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Process and Diesel Sprays | Department of Energy Ultrafast X-ray Phase-Enhanced Microimaging for Visualizing Fuel Injection Process and Diesel Sprays Ultrafast X-ray Phase-Enhanced Microimaging for Visualizing Fuel Injection Process and Diesel Sprays 2005 Diesel Engine Emissions Reduction (DEER) Conference Presentations and Posters 2005_deer_wang.pdf (980 KB) More Documents & Publications Fuel Injection and Spray Research Using X-Ray Diagnostics Fuel Injection and Spray Research Using

  20. Pattern of Retained Contrast on Immediate Postprocedure Computed tomography (CT) After Particle Embolization of Liver Tumors Predicts Subsequent Treatment Response

    SciTech Connect (OSTI)

    Wang Xiaodong Erinjeri, Joseph P.; Jia Xiaoyu Gonen, Mithat; Brown, Karen T. Sofocleous, Constantinos T. Getrajdman, George I. Brody, Lynn A. Thornton, Raymond H. Maybody, Majid Covey, Ann M. Siegelbaum, Robert H. Alago, William Solomon, Stephen B.

    2013-08-01

    PurposeTo determine if the pattern of retained contrast on immediate postprocedure computed tomography (CT) after particle embolization of hepatic tumors predicts modified Response Evaluation Criteria in Solid Tumors (mRECIST) response.Materials and MethodsThis study was approved by the Institutional Review Board with a waiver of authorization. One hundred four liver tumors were embolized with spherical embolic agents (Embospheres, Bead Block, LC Bead) and polyvinyl alcohol. Noncontrast CT was performed immediately after embolization to assess contrast retention in the targeted tumors, and treatment response was assessed by mRECIST criteria on follow-up CT (average time 9.0 {+-} 7.7 weeks after embolization). Tumor contrast retention (TCR) was determined based on change in Hounsfield units (HUs) of the index tumors between the preprocedure and immediate postprocedure scans; vascular contrast retention (VCR) was rated; and defects in contrast retention (DCR) were also documented. The morphology of residual enhancing tumor on follow-up CT was described as partial, circumferential, or total. Association between TCR variables and tumor response were assessed using multivariate logistic regression.ResultsOf 104 hepatic tumors, 51 (49 %) tumors had complete response (CR) by mRECIST criteria; 23 (22.1 %) had partial response (PR); 21 (20.2 %) had stable disease (SD); and 9 (8.7 %) had progressive disease (PD). By multivariate analysis, TCR, VCR, and tumor size are independent predictors of CR (p = 0.02, 0.05, and 0.005 respectively). In 75 tumors, DCR was found to be an independent predictor of failure to achieve complete response (p < 0.0001) by imaging criteria.ConclusionTCR, VCR, and DCR on immediate posttreatment CT are independent predictors of CR by mRECIST criteria.

  1. Framework and algorithms for illustrative visualizations of time-varying flows on unstructured meshes

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Rattner, Alexander S.; Guillen, Donna Post; Joshi, Alark; Garimella, Srinivas

    2016-03-17

    Photo- and physically realistic techniques are often insufficient for visualization of fluid flow simulations, especially for 3D and time-varying studies. Substantial research effort has been dedicated to the development of non-photorealistic and illustration-inspired visualization techniques for compact and intuitive presentation of such complex datasets. However, a great deal of work has been reproduced in this field, as many research groups have developed specialized visualization software. Additionally, interoperability between illustrative visualization software is limited due to diverse processing and rendering architectures employed in different studies. In this investigation, a framework for illustrative visualization is proposed, and implemented in MarmotViz, a ParaViewmore » plug-in, enabling its use on a variety of computing platforms with various data file formats and mesh geometries. Region-of-interest identification and feature-tracking algorithms incorporated into this tool are described. Implementations of multiple illustrative effect algorithms are also presented to demonstrate the use and flexibility of this framework. Here, by providing an integrated framework for illustrative visualization of CFD data, MarmotViz can serve as a valuable asset for the interpretation of simulations of ever-growing scale.« less

  2. BactoGeNIE: A large-scale comparative genome visualization for big displays

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Aurisano, Jillian; Reda, Khairi; Johnson, Andrew; Marai, Elisabeta G.; Leigh, Jason

    2015-08-13

    The volume of complete bacterial genome sequence data available to comparative genomics researchers is rapidly increasing. However, visualizations in comparative genomics--which aim to enable analysis tasks across collections of genomes--suffer from visual scalability issues. While large, multi-tiled and high-resolution displays have the potential to address scalability issues, new approaches are needed to take advantage of such environments, in order to enable the effective visual analysis of large genomics datasets. In this paper, we present Bacterial Gene Neighborhood Investigation Environment, or BactoGeNIE, a novel and visually scalable design for comparative gene neighborhood analysis on large display environments. We evaluate BactoGeNIE throughmore » a case study on close to 700 draft Escherichia coli genomes, and present lessons learned from our design process. In conclusion, BactoGeNIE accommodates comparative tasks over substantially larger collections of neighborhoods than existing tools and explicitly addresses visual scalability. Given current trends in data generation, scalable designs of this type may inform visualization design for large-scale comparative research problems in genomics.« less

  3. Visualization at Supercomputing Centers: The Tale of Little Big Iron and the Three Skinny Guys

    SciTech Connect (OSTI)

    Bethel, E. Wes; van Rosendale, John; Southard, Dale; Gaither, Kelly; Childs, Hank; Brugger, Eric; Ahern, Sean

    2010-12-01

    Supercomputing Centers (SC's) are unique resources that aim to enable scientific knowledge discovery through the use of large computational resources, the Big Iron. Design, acquisition, installation, and management of the Big Iron are activities that are carefully planned and monitored. Since these Big Iron systems produce a tsunami of data, it is natural to co-locate visualization and analysis infrastructure as part of the same facility. This infrastructure consists of hardware (Little Iron) and staff (Skinny Guys). Our collective experience suggests that design, acquisition, installation, and management of the Little Iron and Skinny Guys does not receive the same level of treatment as that of the Big Iron. The main focus of this article is to explore different aspects of planning, designing, fielding, and maintaining the visualization and analysis infrastructure at supercomputing centers. Some of the questions we explore in this article include:"How should the Little Iron be sized to adequately support visualization and analysis of data coming off the Big Iron?" What sort of capabilities does it need to have?" Related questions concern the size of visualization support staff:"How big should a visualization program be (number of persons) and what should the staff do?" and"How much of the visualization should be provided as a support service, and how much should applications scientists be expected to do on their own?"

  4. Generalized Framework and Algorithms for Illustrative Visualization of Time-Varying Data on Unstructured Meshes

    SciTech Connect (OSTI)

    Alexander S. Rattner; Donna Post Guillen; Alark Joshi

    2012-12-01

    Photo- and physically-realistic techniques are often insufficient for visualization of simulation results, especially for 3D and time-varying datasets. Substantial research efforts have been dedicated to the development of non-photorealistic and illustration-inspired visualization techniques for compact and intuitive presentation of such complex datasets. While these efforts have yielded valuable visualization results, a great deal of work has been reproduced in studies as individual research groups often develop purpose-built platforms. Additionally, interoperability between illustrative visualization software is limited due to specialized processing and rendering architectures employed in different studies. In this investigation, a generalized framework for illustrative visualization is proposed, and implemented in marmotViz, a ParaView plugin, enabling its use on variety of computing platforms with various data file formats and mesh geometries. Detailed descriptions of the region-of-interest identification and feature-tracking algorithms incorporated into this tool are provided. Additionally, implementations of multiple illustrative effect algorithms are presented to demonstrate the use and flexibility of this framework. By providing a framework and useful underlying functionality, the marmotViz tool can act as a springboard for future research in the field of illustrative visualization.

  5. Collaborative Visualization for Large-Scale Accelerator Electromagnetic Modeling (Final Report)

    SciTech Connect (OSTI)

    William J. Schroeder

    2011-11-13

    This report contains the comprehensive summary of the work performed on the SBIR Phase II, Collaborative Visualization for Large-Scale Accelerator Electromagnetic Modeling at Kitware Inc. in collaboration with Stanford Linear Accelerator Center (SLAC). The goal of the work was to develop collaborative visualization tools for large-scale data as illustrated in the figure below. The solutions we proposed address the typical problems faced by geographicallyand organizationally-separated research and engineering teams, who produce large data (either through simulation or experimental measurement) and wish to work together to analyze and understand their data. Because the data is large, we expect that it cannot be easily transported to each team member's work site, and that the visualization server must reside near the data. Further, we also expect that each work site has heterogeneous resources: some with large computing clients, tiled (or large) displays and high bandwidth; others sites as simple as a team member on a laptop computer. Our solution is based on the open-source, widely used ParaView large-data visualization application. We extended this tool to support multiple collaborative clients who may locally visualize data, and then periodically rejoin and synchronize with the group to discuss their findings. Options for managing session control, adding annotation, and defining the visualization pipeline, among others, were incorporated. We also developed and deployed a Web visualization framework based on ParaView that enables the Web browser to act as a participating client in a collaborative session. The ParaView Web Visualization framework leverages various Web technologies including WebGL, JavaScript, Java and Flash to enable interactive 3D visualization over the web using ParaView as the visualization server. We steered the development of this technology by teaming with the SLAC National Accelerator Laboratory. SLAC has a computationally-intensive problem

  6. Improved tumor-targeting MRI contrast agents: Gd(DOTA) conjugates of a cycloalkane-based RGD peptide

    SciTech Connect (OSTI)

    Park, Ji-Ae; Lee, Yong Jin; Ko, In Ok; Kim, Tae-Jeong; Chang, Yongmin; Lim, Sang Moo; Kim, Kyeong Min; Kim, Jung Young

    2014-12-12

    Highlights: • Development of improved tumor-targeting MRI contrast agents. • To increase the targeting ability of RGD, we developed cycloalkane-based RGD peptides. • Gd(DOTA) conjugates of cycloalkane-based RGD peptide show improved tumor signal enhancement in vivo MR images. - Abstract: Two new MRI contrast agents, Gd-DOTA-c(RGD-ACP-K) (1) and Gd-DOTA-c(RGD-ACH-K) (2), which were designed by incorporating aminocyclopentane (ACP)- or aminocyclohexane (ACH)-carboxylic acid into Gd-DOTA (gadolinium-tetraazacyclo dodecanetetraacetic acid) and cyclic RGDK peptides, were synthesized and evaluated for tumor-targeting ability in vitro and in vivo. Binding affinity studies showed that both 1 and 2 exhibited higher affinity for integrin receptors than cyclic RGDyK peptides, which were used as a reference. These complexes showed high relaxivity and good stability in human serum and have the potential to improve target-specific signal enhancement in vivo MR images.

  7. Scanning EM of non-heavy metal stained biosamples: Large-field of view, high contrast and highly efficient immunolabeling

    SciTech Connect (OSTI)

    Kuipers, Jeroen; Boer, Pascal de; Giepmans, Ben N.G.

    2015-10-01

    Scanning electron microscopy (SEM) is increasing its application in life sciences for electron density measurements of ultrathin sections. These are traditionally analyzed with transmission electron microscopy (TEM); by most labs, SEM analysis still is associated with surface imaging only. Here we report several advantages of SEM for thin sections over TEM, both for structural inspection, as well as analyzing immuno-targeted labels such as quantum dots (QDs) and gold, where we find that QD-labeling is ten times more efficient than gold-labeling. Furthermore, we find that omitting post-staining with uranyl and lead leads to QDs readily detectable over the ultrastructure, but under these conditions ultrastructural contrast was even almost invisible in TEM examination. Importantly, imaging in SEM with STEM detection leads to both outstanding QDs and ultrastructural contrast. STEM imaging is superior over back-scattered electron imaging of these non-contrasted samples, whereas secondary electron detection cannot be used at all. We conclude that examination of ultrathin sections by SEM, which may be immunolabeled with QDs, will allow rapid and straightforward analysis of large fields with more efficient labeling than can be achieved with immunogold. The large fields of view routinely achieved with SEM, but not with TEM, allows straightforward raw data sharing using virtual microscopy, also known as nanotomy when this concerns EM data in the life sciences. - Highlights: • High resolution and large fields of view via nanotomy or virtual microscopy. • Highly relevant for EM‐datasets where information density is high. • Sample preparation with low contrast good for STEM, not TEM. • Quantum dots now stand out in STEM‐based detection. • 10 Times more efficient labeling with quantum dots compared to gold.

  8. Efficient phase contrast imaging in STEM using a pixelated detector. Part 1: Experimental demonstration at atomic resolution

    SciTech Connect (OSTI)

    Pennycook, Timothy J.; Lupini, Andrew R.; Yang, Hao; Murfitt, Matthew F.; Jones, Lewys; Nellist, Peter D.

    2014-10-15

    In this paper, we demonstrate a method to achieve high efficiency phase contrast imaging in aberration corrected scanning transmission electron microscopy (STEM) with a pixelated detector. The pixelated detector is used to record the Ronchigram as a function of probe position which is then analyzed with ptychography. Ptychography has previously been used to provide super-resolution beyond the diffraction limit of the optics, alongside numerically correcting for spherical aberration. Here we rely on a hardware aberration corrector to eliminate aberrations, but use the pixelated detector data set to utilize the largest possible volume of Fourier space to create high efficiency phase contrast images. The use of ptychography to diagnose the effects of chromatic aberration is also demonstrated. In conclusion, the four dimensional dataset is used to compare different bright field detector configurations from the same scan for a sample of bilayer graphene. Our method of high efficiency ptychography produces the clearest images, while annular bright field produces almost no contrast for an in-focus aberration-corrected probe.

  9. Efficient phase contrast imaging in STEM using a pixelated detector. Part 1: Experimental demonstration at atomic resolution

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Pennycook, Timothy J.; Lupini, Andrew R.; Yang, Hao; Murfitt, Matthew F.; Jones, Lewys; Nellist, Peter D.

    2014-10-15

    In this paper, we demonstrate a method to achieve high efficiency phase contrast imaging in aberration corrected scanning transmission electron microscopy (STEM) with a pixelated detector. The pixelated detector is used to record the Ronchigram as a function of probe position which is then analyzed with ptychography. Ptychography has previously been used to provide super-resolution beyond the diffraction limit of the optics, alongside numerically correcting for spherical aberration. Here we rely on a hardware aberration corrector to eliminate aberrations, but use the pixelated detector data set to utilize the largest possible volume of Fourier space to create high efficiency phasemore » contrast images. The use of ptychography to diagnose the effects of chromatic aberration is also demonstrated. In conclusion, the four dimensional dataset is used to compare different bright field detector configurations from the same scan for a sample of bilayer graphene. Our method of high efficiency ptychography produces the clearest images, while annular bright field produces almost no contrast for an in-focus aberration-corrected probe.« less

  10. COLLABORATIVE RESEARCH: Parallel Analysis Tools and New Visualization Techniques for Ultra-Large Climate Data Set

    SciTech Connect (OSTI)

    middleton, Don; Haley, Mary

    2014-12-10

    ParVis was a project funded under LAB 10-05: “Earth System Modeling: Advanced Scientific Visualization of Ultra-Large Climate Data Sets”. Argonne was the lead lab with partners at PNNL, SNL, NCAR and UC-Davis. This report covers progress from January 1st, 2013 through Dec 1st, 2014. Two previous reports covered the period from Summer, 2010, through September 2011 and October 2011 through December 2012, respectively. While the project was originally planned to end on April 30, 2013, personnel and priority changes allowed many of the institutions to continue work through FY14 using existing funds. A primary focus of ParVis was introducing parallelism to climate model analysis to greatly reduce the time-to-visualization for ultra-large climate data sets. Work in the first two years was conducted on two tracks with different time horizons: one track to provide immediate help to climate scientists already struggling to apply their analysis to existing large data sets and another focused on building a new data-parallel library and tool for climate analysis and visualization that will give the field a platform for performing analysis and visualization on ultra-large datasets for the foreseeable future. In the final 2 years of the project, we focused mostly on the new data-parallel library and associated tools for climate analysis and visualization.

  11. A Global System for Transportation Simulation and Visualization in Emergency Evacuation Scenarios

    SciTech Connect (OSTI)

    Lu, Wei; Liu, Cheng; Thomas, Neil; Bhaduri, Budhendra L; Han, Lee

    2015-01-01

    Simulation-based studies are frequently used for evacuation planning and decision making processes. Given the transportation systems complexity and data availability, most evacuation simulation models focus on certain geographic areas. With routine improvement of OpenStreetMap road networks and LandScanTM global population distribution data, we present WWEE, a uniform system for world-wide emergency evacuation simulations. WWEE uses unified data structure for simulation inputs. It also integrates a super-node trip distribution model as the default simulation parameter to improve the system computational performance. Two levels of visualization tools are implemented for evacuation performance analysis, including link-based macroscopic visualization and vehicle-based microscopic visualization. For left-hand and right-hand traffic patterns in different countries, the authors propose a mirror technique to experiment with both scenarios without significantly changing traffic simulation models. Ten cities in US, Europe, Middle East, and Asia are modeled for demonstration. With default traffic simulation models for fast and easy-to-use evacuation estimation and visualization, WWEE also retains the capability of interactive operation for users to adopt customized traffic simulation models. For the first time, WWEE provides a unified platform for global evacuation researchers to estimate and visualize their strategies performance of transportation systems under evacuation scenarios.

  12. Visualization at Supercomputing Centers: The Tale of Little Big Iron and the Three Skinny Guys

    SciTech Connect (OSTI)

    Bethel, E Wes; Brugger, Eric

    2011-01-01

    Supercomputing centers are unique resources that aim to enable scientific knowledge discovery by employing large computational resources - the 'Big Iron.' Design, acquisition, installation, and management of the Big Iron are carefully planned and monitored. Because these Big Iron systems produce a tsunami of data, it's natural to colocate the visualization and analysis infrastructure. This infrastructure consists of hardware (Little Iron) and staff (Skinny Guys). Our collective experience suggests that design, acquisition, installation, and management of the Little Iron and Skinny Guys doesn't receive the same level of treatment as that of the Big Iron. This article explores the following questions about the Little Iron: How should we size the Little Iron to adequately support visualization and analysis of data coming off the Big Iron? What sort of capabilities must it have? Related questions concern the size of visualization support staff: How big should a visualization program be - that is, how many Skinny Guys should it have? What should the staff do? How much of the visualization should be provided as a support service, and how much should applications scientists be expected to do on their own?

  13. Immersive Visualization for Materials Science Data Analysis using the Oculus Rift

    SciTech Connect (OSTI)

    Drouhard, Margaret MEG G; Steed, Chad A; Hahn, Steven E; Proffen, Thomas E; Daniel, Jamison R; Matheson, Michael A

    2015-01-01

    In this paper, we propose strategies and objectives for immersive data visualization with applications in materials science using the Oculus Rift virtual reality headset. We provide background on currently available analysis tools for neutron scattering data and other large-scale materials science projects. In the context of the current challenges facing scientists, we discuss immersive virtual reality visualization as a potentially powerful solution. We introduce a prototype immersive visual- ization system, developed in conjunction with materials scientists at the Spallation Neutron Source, which we have used to explore large crystal structures and neutron scattering data. Finally, we offer our perspective on the greatest challenges that must be addressed to build effective and intuitive virtual reality analysis tools that will be useful for scientists in a wide range of fields.

  14. Why High Performance Visual Data Analytics is both Relevant and Difficult

    SciTech Connect (OSTI)

    Bethel, E. Wes; Byna, Suren; Ruebel, Oliver; Wu, K. John; Wehner, Michael

    2012-12-01

    Data visualization, as well as data analysis and data analytics, are all an integral part of the scientific process. Collectively, these technologies provide the means to gain insight into data of ever-increasing size and complexity. Over the past two decades, a substantial amount of visualization, analysis, and analytics R&D has focused on the challenges posed by increasing data size and complexity, as well as on the increasing complexity of a rapidly changing computational platform landscape. While some of this research focuses on solely on technologies, such as indexing and searching or novel analysis or visualization algorithms, other R&D projects focus on applying technological advances to specific application problems. Some of the most interesting and productive results occur when these two activities R&D and application are conducted in a collaborative fashion, where application needs drive R&D, and R&D results are immediately applicable to real world problems.

  15. An open source GIS tool to quantify the visual impact of wind turbines and photovoltaic panels

    SciTech Connect (OSTI)

    Minelli, Annalisa; Marchesini, Ivan; Taylor, Faith E.; De Rosa, Pierluigi; Casagrande, Luca; Cenci, Michele

    2014-11-15

    Although there are clear economic and environmental incentives for producing energy from solar and wind power, there can be local opposition to their installation due to their impact upon the landscape. To date, no international guidelines exist to guide quantitative visual impact assessment of these facilities, making the planning process somewhat subjective. In this paper we demonstrate the development of a method and an Open Source GIS tool to quantitatively assess the visual impact of these facilities using line-of-site techniques. The methods here build upon previous studies by (i) more accurately representing the shape of energy producing facilities, (ii) taking into account the distortion of the perceived shape and size of facilities caused by the location of the observer, (iii) calculating the possible obscuring of facilities caused by terrain morphology and (iv) allowing the combination of various facilities to more accurately represent the landscape. The tool has been applied to real and synthetic case studies and compared to recently published results from other models, and demonstrates an improvement in accuracy of the calculated visual impact of facilities. The tool is named r.wind.sun and is freely available from GRASS GIS AddOns. - Highlights: • We develop a tool to quantify wind turbine and photovoltaic panel visual impact. • The tool is freely available to download and edit as a module of GRASS GIS. • The tool takes into account visual distortion of the shape and size of objects. • The accuracy of calculation of visual impact is improved over previous methods.

  16. Use Of Vitamin B6 To Mitigate Visual Field Deficits Associated With The Use Of Gabaergic Drugs In Mannals

    DOE Patents [OSTI]

    Ashby, Jr., Charles R.

    2004-03-30

    The invention provides a method for treating visual field defects in a mammal in need thereof by administering an effective amount of vitamin B6 to the mammal.

  17. Multilevel adaptive solution procedure for material nonlinear problems in visual programming environment

    SciTech Connect (OSTI)

    Kim, D.; Ghanem, R.

    1994-12-31

    Multigrid solution technique to solve a material nonlinear problem in a visual programming environment using the finite element method is discussed. The nonlinear equation of equilibrium is linearized to incremental form using Newton-Rapson technique, then multigrid solution technique is used to solve linear equations at each Newton-Rapson step. In the process, adaptive mesh refinement, which is based on the bisection of a pair of triangles, is used to form grid hierarchy for multigrid iteration. The solution process is implemented in a visual programming environment with distributed computing capability, which enables more intuitive understanding of solution process, and more effective use of resources.

  18. Linking Automated Data Analysis and Visualization with Applications in Developmental Biology and High-Energy Physics

    SciTech Connect (OSTI)

    Ruebel, Oliver

    2009-12-01

    Knowledge discovery from large and complex collections of today's scientific datasets is a challenging task. With the ability to measure and simulate more processes at increasingly finer spatial and temporal scales, the increasing number of data dimensions and data objects is presenting tremendous challenges for data analysis and effective data exploration methods and tools. Researchers are overwhelmed with data and standard tools are often insufficient to enable effective data analysis and knowledge discovery. The main objective of this thesis is to provide important new capabilities to accelerate scientific knowledge discovery form large, complex, and multivariate scientific data. The research covered in this thesis addresses these scientific challenges using a combination of scientific visualization, information visualization, automated data analysis, and other enabling technologies, such as efficient data management. The effectiveness of the proposed analysis methods is demonstrated via applications in two distinct scientific research fields, namely developmental biology and high-energy physics.Advances in microscopy, image analysis, and embryo registration enable for the first time measurement of gene expression at cellular resolution for entire organisms. Analysis of high-dimensional spatial gene expression datasets is a challenging task. By integrating data clustering and visualization, analysis of complex, time-varying, spatial gene expression patterns and their formation becomes possible. The analysis framework MATLAB and the visualization have been integrated, making advanced analysis tools accessible to biologist and enabling bioinformatic researchers to directly integrate their analysis with the visualization. Laser wakefield particle accelerators (LWFAs) promise to be a new compact source of high-energy particles and radiation, with wide applications ranging from medicine to physics. To gain insight into the complex physical processes of particle

  19. Visualization of UHC Emissions for Low-Temperature Diesel Engine Combustion

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    | Department of Energy Visualization of UHC Emissions for Low-Temperature Diesel Engine Combustion Visualization of UHC Emissions for Low-Temperature Diesel Engine Combustion Presentation given at DEER 2006, August 20-24, 2006, Detroit, Michigan. Sponsored by the U.S. DOE's EERE FreedomCar and Fuel Partnership and 21st Century Truck Programs. 2006_deer_musculus.pdf (9.8 MB) More Documents & Publications In-Cylinder Processes of EGR-Diluted Low-Load, Low-Temperature Diesel Combustion A

  20. Efficient Feature-Driven Visualization of Large-Scale Scientific Data

    SciTech Connect (OSTI)

    Lu, Aidong

    2012-12-12

    Very large, complex scientific data acquired in many research areas creates critical challenges for scientists to understand, analyze, and organize their data. The objective of this project is to expand the feature extraction and analysis capabilities to develop powerful and accurate visualization tools that can assist domain scientists with their requirements in multiple phases of scientific discovery. We have recently developed several feature-driven visualization methods for extracting different data characteristics of volumetric datasets. Our results verify the hypothesis in the proposal and will be used to develop additional prototype systems.

  1. Feature-space assessment of electrical impedance tomography coregistered with computed tomography in detecting multiple contrast targets

    SciTech Connect (OSTI)

    Krishnan, Kalpagam; Liu, Jeff; Kohli, Kirpal

    2014-06-15

    Purpose: Fusion of electrical impedance tomography (EIT) with computed tomography (CT) can be useful as a clinical tool for providing additional physiological information about tissues, but requires suitable fusion algorithms and validation procedures. This work explores the feasibility of fusing EIT and CT images using an algorithm for coregistration. The imaging performance is validated through feature space assessment on phantom contrast targets. Methods: EIT data were acquired by scanning a phantom using a circuit, configured for injecting current through 16 electrodes, placed around the phantom. A conductivity image of the phantom was obtained from the data using electrical impedance and diffuse optical tomography reconstruction software (EIDORS). A CT image of the phantom was also acquired. The EIT and CT images were fused using a region of interest (ROI) coregistration fusion algorithm. Phantom imaging experiments were carried out on objects of different contrasts, sizes, and positions. The conductive medium of the phantoms was made of a tissue-mimicking bolus material that is routinely used in clinical radiation therapy settings. To validate the imaging performance in detecting different contrasts, the ROI of the phantom was filled with distilled water and normal saline. Spatially separated cylindrical objects of different sizes were used for validating the imaging performance in multiple target detection. Analyses of the CT, EIT and the EIT/CT phantom images were carried out based on the variations of contrast, correlation, energy, and homogeneity, using a gray level co-occurrence matrix (GLCM). A reference image of the phantom was simulated using EIDORS, and the performances of the CT and EIT imaging systems were evaluated and compared against the performance of the EIT/CT system using various feature metrics, detectability, and structural similarity index measures. Results: In detecting distilled and normal saline water in bolus medium, EIT as a stand

  2. Dynamic contrast-enhanced magnetic resonance imaging of radiation therapy-induced microcirculation changes in rectal cancer

    SciTech Connect (OSTI)

    Lussanet, Quido G. de . E-mail: qdlu@rdia.azm.nl; Backes, Walter H.; Griffioen, Arjan W.; Padhani, Anwar R.; Baeten, Coen I.; Baardwijk, Angela van; Lambin, Philippe; Beets, Geerard L.; Engelshoven, Jos van; Beets-Tan, Regina G.H.

    2005-12-01

    Purpose: Dynamic contrast-enhanced T1-weighted magnetic resonance imaging (DCE-MRI) allows noninvasive evaluation of tumor microvasculature characteristics. This study evaluated radiation therapy related microvascular changes in locally advanced rectal cancer by DCE-MRI and histology. Methods and Materials: Dynamic contrast-enhanced-MRI was performed in 17 patients with primary rectal cancer. Seven patients underwent 25 fractions of 1.8 Gy radiation therapy (RT) (long RT) before DCE-MRI and 10 did not. Of these 10, 3 patients underwent five fractions of 5 Gy RT (short RT) in the week before surgery. The RT treated and nontreated groups were compared in terms of endothelial transfer coefficient (K{sup PS}, measured by DCE-MRI), microvessel density (MVD) (scored by immunoreactivity to CD31 and CD34), and tumor cell and endothelial cell proliferation (scored by immunoreactivity to Ki67). Results: Tumor K{sup PS} was 77% (p = 0.03) lower in the RT-treated group. Histogram analyses showed that RT reduced both magnitude and intratumor heterogeneity of K{sup PS} (p = 0.01). MVD was significantly lower (37%, p 0.03) in tumors treated with long RT than in nonirradiated tumors, but this was not the case with short RT. Endothelial cell proliferation was reduced with short RT (81%, p = 0.02) just before surgery, but not with long RT (p > 0.8). Tumor cell proliferation was reduced with both long (57%, p < 0.001) and short RT (52%, p = 0.002). Conclusion: Dynamic contrast-enhanced-MRI-derived K{sup PS} values showed significant radiation therapy related reductions in microvessel blood flow in locally advanced rectal cancer. These findings may be useful in evaluating effects of radiation combination therapies (e.g., chemoradiation or RT combined with antiangiogenesis therapy), to account for effects of RT alone.

  3. Model for Electron-Beam-Induced Current Analysis of mc-Si Addressing Defect Contrast Behavior in Heavily Contaminated PV Material: Preprint

    SciTech Connect (OSTI)

    Guthrey, H.; Gorman, B.; Al-Jassim, M.

    2012-06-01

    Much work has been done to correlate electron-beam-induced current (EBIC) contrast behavior of extended defects with the character and degree of impurity decoration. However, existing models fail to account for recently observed contrast behavior of defects in heavily contaminated mc-Si PV cells. We have observed large increases in defect contrast with decreasing temperature for all electrically active defects, regardless of their initial contrast signatures at ambient temperature. This negates the usefulness of the existing models in identifying defect character and levels of impurity decoration based on the temperature dependence of the contrast behavior. By considering the interactions of transition metal impurities with the silicon lattice and extended defects, we attempt to provide an explanation for these observations. Our findings will enhance the ability of the PV community to understand and mitigate the effects of these types of defects as the adoption of increasingly lower purity feedstocks for mc-Si PV production continues.

  4. Dynamics and structure of self-generated magnetics fields on solids following high contrast, high intensity laser irradiation

    SciTech Connect (OSTI)

    Albertazzi, B.; Chen, S. N.; Fuchs, J.; Antici, P.; Böker, J.; Swantusch, M.; Willi, O.; Borghesi, M.; Breil, J.; Feugeas, J. L.; Nicolaï, Ph.; Tikhonchuk, V. T.; D'Humières, E.; Dervieux, V.; Nakatsutsumi, M.; Romagnagni, L.; Lancia, L.; Shepherd, R.; Sentoku, Y.; Starodubtsev, M.; and others

    2015-12-15

    The dynamics of self-generated magnetic B-fields produced following the interaction of a high contrast, high intensity (I > 10{sup 19 }W cm{sup −2}) laser beam with thin (3 μm thick) solid (Al or Au) targets is investigated experimentally and numerically. Two main sources drive the growth of B-fields on the target surfaces. B-fields are first driven by laser-generated hot electron currents that relax over ∼10–20 ps. Over longer timescales, the hydrodynamic expansion of the bulk of the target into vacuum also generates B-field induced by non-collinear gradients of density and temperature. The laser irradiation of the target front side strongly localizes the energy deposition at the target front, in contrast to the target rear side, which is heated by fast electrons over a much larger area. This induces an asymmetry in the hydrodynamic expansion between the front and rear target surfaces, and consequently the associated B-fields are found strongly asymmetric. The sole long-lasting (>30 ps) B-fields are the ones growing on the target front surface, where they remain of extremely high strength (∼8–10 MG). These B-fields have been recently put by us in practical use for focusing laser-accelerated protons [B. Albertazzi et al., Rev. Sci. Instrum. 86, 043502 (2015)]; here we analyze in detail their dynamics and structure.

  5. An efficient reconstruction algorithm for differential phase-contrast tomographic images from a limited number of views

    SciTech Connect (OSTI)

    Sunaguchi, Naoki; Yuasa, Tetsuya; Gupta, Rajiv; Ando, Masami

    2015-12-21

    The main focus of this paper is reconstruction of tomographic phase-contrast image from a set of projections. We propose an efficient reconstruction algorithm for differential phase-contrast computed tomography that can considerably reduce the number of projections required for reconstruction. The key result underlying this research is a projection theorem that states that the second derivative of the projection set is linearly related to the Laplacian of the tomographic image. The proposed algorithm first reconstructs the Laplacian image of the phase-shift distribution from the second-derivative of the projections using total variation regularization. The second step is to obtain the phase-shift distribution by solving a Poisson equation whose source is the Laplacian image previously reconstructed under the Dirichlet condition. We demonstrate the efficacy of this algorithm using both synthetically generated simulation data and projection data acquired experimentally at a synchrotron. The experimental phase data were acquired from a human coronary artery specimen using dark-field-imaging optics pioneered by our group. Our results demonstrate that the proposed algorithm can reduce the number of projections to approximately 33% as compared with the conventional filtered backprojection method, without any detrimental effect on the image quality.

  6. Proof-of-Concept Demonstration Results for Robotic Visual Servo Controllers

    SciTech Connect (OSTI)

    Chawda, P.V.

    2004-09-22

    There is significant motivation to provide robotic systems with improved autonomy as a means to significantly accelerate deactivation and decommissioning operations while also reducing the associated costs, removing human operators from hazardous environments, and reducing the required burden and skill of human operators. To achieve improved autonomy, fundamental research is focused on the challenges of developing visual servo controllers. The challenge in developing these controllers is that a camera provides 2-dimensional image information about the 3-dimensional Euclidean-space through a perspective (range dependent) projection that can be corrupted by uncertainty in the camera calibration matrix. Disturbances in this relationship (i.e., corruption in the sensor information) propagate erroneous information to the feedback controller of the robot, leading to potentially unpredictable task execution. This technical manual describes 3 proof-of-concept demonstrations of visual servo controllers developed from fundamental research aimed at these challenges. Specifically, one section describes the implementation of a cooperative visual servo control scheme with a camera-in-hand and a fixed camera to track a moving target despite uncertainty in the camera calibration and the unknown constant distance from the camera to a target where the camera is mounted on the end-effector of a 6 degrees-of-freedom hydraulic robot manipulator. The next section describes the implementation of 2 homography-based visual servo tracking and regulation controllers for a mobile robot with a calibrated camera despite an unknown time-varying distance from the camera to a target.

  7. Visualization of Heat Transfer and Core Damage With RGUI 1.5

    SciTech Connect (OSTI)

    Mesina, George L.

    2002-07-01

    Graphical User Interfaces (GUI) have become an integral and essential part of computer software. In the ever-changing world of computing, they provide the user with a valuable means to learn, understand, and use the application software while also helping applications adapt to and span different computing paradigms, such as different operating systems. For these reasons, GUI development for nuclear plant analysis programs has been ongoing for a decade and a half and much progress has been made. With the development of codes such as RELAP5-3D [1] and SCDAP/RELAP5 that have multi-dimensional modeling capability, it has become necessary to represent three-dimensional, calculated data. The RELAP5-3D Graphical User Interface (RGUI) [4] was designed specifically for this purpose. It reduces the difficulty of analyzing complex three-dimensional models and enhances the analysts' ability to recognize plant behavior visually. Previous versions of RGUI [5] focused on visualizing reactor coolant behavior during a simulated transient or accident. Recent work has extended RGUI to display two other phenomena, heat transfer and core damage. Heat transfer is depicted through the visualization of RELAP5-3D heat structures. Core damage is visualized by displaying fuel rods and other core structures in a reactor vessel screen. Conditions within the core are displayed via numerical results and color maps. These new features of RGUI 1.5 are described and illustrated. (authors)

  8. Interactive, Internet Delivery of Scientific Visualization viaStructured, Prerendered Multiresolution Imagery

    SciTech Connect (OSTI)

    Chen, Jerry; Yoon, Ilmi; Bethel, E. Wes

    2005-04-20

    We present a novel approach for highly interactive remote delivery of visualization results. Instead of real-time rendering across the internet, our approach, inspired by QuickTime VR's Object Movieconcept, delivers pre-rendered images corresponding to different viewpoints and different time steps to provide the experience of 3D and temporal navigation. We use tiled, multiresolution image streaming to consume minimum bandwidth while providing the maximum resolution that a user can perceive from a given viewpoint. Since image data, a viewpoint and time stamps are the only required inputs, our approach is generally applicable to all visualization and graphics rendering applications capable of generating image files in an ordered fashion. Our design is a form of latency-tolerant remote visualization, where visualization and Rendering time is effectively decoupled from interactive exploration. Our approach trades off increased interactivity, flexible resolution (for individual clients), reduced load and effective reuse of coherent frames between multiple users (from the servers perspective) at the expense of unconstrained exploration. A normal web server is the vehicle for providing on-demand images to the remote client application, which uses client-pull to obtain and cache only those images required to fulfill the interaction needs. This paper presents an architectural description of the system along with a performance characterization for stage of production, delivery and viewing pipeline.

  9. An Application of Multivariate Statistical Analysis for Query-Driven Visualization

    SciTech Connect (OSTI)

    Gosink, Luke J.; Garth, Christoph; Anderson, John C.; Bethel, E. Wes; Joy, Kenneth I.

    2010-03-01

    Abstract?Driven by the ability to generate ever-larger, increasingly complex data, there is an urgent need in the scientific community for scalable analysis methods that can rapidly identify salient trends in scientific data. Query-Driven Visualization (QDV) strategies are among the small subset of techniques that can address both large and highly complex datasets. This paper extends the utility of QDV strategies with a statistics-based framework that integrates non-parametric distribution estimation techniques with a new segmentation strategy to visually identify statistically significant trends and features within the solution space of a query. In this framework, query distribution estimates help users to interactively explore their query's solution and visually identify the regions where the combined behavior of constrained variables is most important, statistically, to their inquiry. Our new segmentation strategy extends the distribution estimation analysis by visually conveying the individual importance of each variable to these regions of high statistical significance. We demonstrate the analysis benefits these two strategies provide and show how they may be used to facilitate the refinement of constraints over variables expressed in a user's query. We apply our method to datasets from two different scientific domains to demonstrate its broad applicability.

  10. Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) Final Report

    SciTech Connect (OSTI)

    Williams, Dean N.

    2014-05-19

    A partnership across government, academic, and private sectors has created a novel system that enables climate researchers to solve current and emerging data analysis and visualization challenges. The Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) software project utilizes the Python application programming interface (API) combined with C/C++/Fortran implementations for performance-critical software that offers the best compromise between "scalability" and “ease-of-use.” The UV-CDAT system is highly extensible and customizable for high-performance interactive and batch visualization and analysis for climate science and other disciplines of geosciences. For complex, climate data-intensive computing, UV-CDAT’s inclusive framework supports Message Passing Interface (MPI) parallelism as well as taskfarming and other forms of parallelism. More specifically, the UV-CDAT framework supports the execution of Python scripts running in parallel using the MPI executable commands and leverages Department of Energy (DOE)-funded general-purpose, scalable parallel visualization tools such as ParaView and VisIt. This is the first system to be successfully designed in this way and with these features. The climate community leverages these tools and others, in support of a parallel client-server paradigm, allowing extreme-scale, server-side computing for maximum possible speed-up.

  11. Webinar March 14: DetecTape – A Localized Visual Detector for Hydrogen Leaks

    Broader source: Energy.gov [DOE]

    The Energy Department will present a live webinar titled "DetecTape – A Localized Visual Detector for Hydrogen Leaks" on Monday, March 14, from 12 to 1 p.m. Eastern Daylight Time. DetecTape is a color-changing, self-fusing silicone tape designed to detect hydrogen gas leaks in fuel cell, transmission, storage, and generation facilities.

  12. Visualizing nD Point Clouds as Topological Landscape Profiles to Guide Local Data Analysis

    SciTech Connect (OSTI)

    Oesterling, Patrick; Heine, Christian; Weber, Gunther H.; Scheuermann, Gerik

    2012-05-04

    Analyzing high-dimensional point clouds is a classical challenge in visual analytics. Traditional techniques, such as projections or axis-based techniques, suffer from projection artifacts, occlusion, and visual complexity.We propose to split data analysis into two parts to address these shortcomings. First, a structural overview phase abstracts data by its density distribution. This phase performs topological analysis to support accurate and non-overlapping presentation of the high-dimensional cluster structure as a topological landscape profile. Utilizing a landscape metaphor, it presents clusters and their nesting as hills whose height, width, and shape reflect cluster coherence, size, and stability, respectively. A second local analysis phase utilizes this global structural knowledge to select individual clusters or point sets for further, localized data analysis. Focusing on structural entities significantly reduces visual clutter in established geometric visualizations and permits a clearer, more thorough data analysis. In conclusion, this analysis complements the global topological perspective and enables the user to study subspaces or geometric properties, such as shape.

  13. Ultra-scale Visualization Climate Data Analysis Tools (UV-CDAT)

    SciTech Connect (OSTI)

    Williams, Dean N.

    2011-07-20

    This report summarizes work carried out by the Ultra-scale Visualization Climate Data Analysis Tools (UV-CDAT) Team for the period of January 1, 2011 through June 30, 2011. It discusses highlights, overall progress, period goals, and collaborations and lists papers and presentations. To learn more about our project, please visit our UV-CDAT website (URL: http://uv-cdat.org). This report will be forwarded to the program manager for the Department of Energy (DOE) Office of Biological and Environmental Research (BER), national and international collaborators and stakeholders, and to researchers working on a wide range of other climate model, reanalysis, and observation evaluation activities. The UV-CDAT executive committee consists of Dean N. Williams of Lawrence Livermore National Laboratory (LLNL); Dave Bader and Galen Shipman of Oak Ridge National Laboratory (ORNL); Phil Jones and James Ahrens of Los Alamos National Laboratory (LANL), Claudio Silva of Polytechnic Institute of New York University (NYU-Poly); and Berk Geveci of Kitware, Inc. The UV-CDAT team consists of researchers and scientists with diverse domain knowledge whose home institutions also include the National Aeronautics and Space Administration (NASA) and the University of Utah. All work is accomplished under DOE open-source guidelines and in close collaboration with the project's stakeholders, domain researchers, and scientists. Working directly with BER climate science analysis projects, this consortium will develop and deploy data and computational resources useful to a wide variety of stakeholders, including scientists, policymakers, and the general public. Members of this consortium already collaborate with other institutions and universities in researching data discovery, management, visualization, workflow analysis, and provenance. The UV-CDAT team will address the following high-level visualization requirements: (1) Alternative parallel streaming statistics and analysis pipelines - Data

  14. Atomic-Resolution Visualization of Distinctive Chemical Mixing Behavior of Ni, Co and Mn with Li in Layered Lithium Transition-Metal Oxide Cathode Materials

    SciTech Connect (OSTI)

    Yan, Pengfei; Zheng, Jianming; Lv, Dongping; Wei, Yi; Zheng, Jiaxin; Wang, Zhiguo; Kuppan, Saravanan; Yu, Jianguo; Luo, Langli; Edwards, Danny J.; Olszta, Matthew J.; Amine, Khalil; Liu, Jun; Xiao, Jie; Pan, Feng; Chen, Guoying; Zhang, Jiguang; Wang, Chong M.

    2015-07-06

    Capacity and voltage fading of layer structured cathode based on lithium transition metal oxide is closely related to the lattice position and migration behavior of the transition metal ions. However, it is scarcely clear about the behavior of each of these transition metal ions. We report direct atomic resolution visualization of interatomic layer mixing of transition metal (Ni, Co, Mn) and lithium ions in layer structured oxide cathodes for lithium ion batteries. Using chemical imaging with aberration corrected scanning transmission electron microscope (STEM) and DFT calculations, we discovered that in the layered cathodes, Mn and Co tend to reside almost exclusively at the lattice site of transition metal (TM) layer in the structure or little interlayer mixing with Li. In contrast, Ni shows high degree of interlayer mixing with Li. The fraction of Ni ions reside in the Li layer followed a near linear dependence on total Ni concentration before reaching saturation. The observed distinctively different behavior of Ni with respect to Co and Mn provides new insights on both capacity and voltage fade in this class of cathode materials based on lithium and TM oxides, therefore providing scientific basis for selective tailoring of oxide cathode materials for enhanced performance.

  15. Discover, Visualize, and Deliver Geospatial Data through OGC Standards-based WebGIS System

    SciTech Connect (OSTI)

    Wei, Yaxing; SanthanaVannan, Suresh K; Cook, Robert B

    2009-01-01

    Geospatial data are important to understand the Earth - ecosystem dynamics, land cover changes, resource management, and human interactions with the Earth to name a few. One of the biggest difficulties users face is to discover, access, and assemble distributed, large volume, heterogeneous geospatial data to conduct geo-analysis. Traditional methods of geospatial data discovery, visualization, and delivery lack the capabilities of resource sharing and automation across systems or organizational boundaries. They require users to download the data ldquoas-isrdquo in their original file format, projection, and extent. Also, discovering data served by traditional methods requires prior knowledge of data location, and processing requires specialized expertise. These drawbacks of traditional methods create additional burden to users, introduce too much overhead to research, and also reduce the potential usage of the data. At the Oak Ridge National Laboratory (ORNL), researchers working on NASA-sponsored projects: Distributed Active Archive Center (DAAC) and Modeling and Synthesis Thematic Data Center (MAST-DC) have tapped into the benefits of Open Geospatial Consortium (OGC) standards to overcome the drawbacks of traditional methods of geospatial data discovery, visualization, and delivery. The OGC standards-based approach facilitates data sharing and interoperability across network, organizational, and geopolitical boundaries. Tools and services based on OGC standards deliver the data in many user defined formats and allow users to visualize the data prior to download. This paper introduces an approach taken to visualize and deliver ORNL DAAC, MAST-DC, and other relevant geospatial data through OGC standards-based Web Services, including Web Map Service (WMS), Web Coverage Service (WCS), and Web Feature Service (WFS). It also introduces a WebGIS system built on top of OGC services that helps users discover, visualize, and access geospatial data.

  16. Development of a Laser-Produced Plasma X-ray source for Phase-Contrast Radiography of DT Ice layers

    SciTech Connect (OSTI)

    Izumi, N; Dewald, E; Kozioziemski, B; Landen, O L; Koch, J A

    2008-07-21

    Refraction enhanced x-ray phase contrast imaging is crucial for characterization of deuterium-tritium (DT) ice layer roughness in optically opaque inertial confinement fusion capsules. To observe the time development of DT ice roughness over {approx} second timescales, we need a bright x-ray source that can produce an image faster than the evolution of the ice surface roughness. A laser produced plasma x-ray source is one of the candidates that can meet this requirement. We performed experiments at the Janus laser facility at Lawrence Livermore National Laboratory and assessed the characteristics of the laser produced plasma x-ray source as a potential backlight for in situ target characterization.

  17. Resonant Soft X-Ray Contrast Variation Methods as Composition-Specific Probes of Thin Polymer Film Structure

    SciTech Connect (OSTI)

    Welch, Cynthia; Welch, Cynthia F.; Hjelm, Rex P.; Mang, Joseph T.; Hawley, Marilyn E.; Wrobleski, Debra A.; Orler, E. Bruce; Kortright, Jeffrey B

    2008-04-04

    We have developed complementary soft x-ray scattering and reflectometry techniques that allow for the morphological analysis of thin polymer films without resorting to chemical modification or isotopic 2 labeling. With these techniques, we achieve significant, x-ray energy-dependent contrast between carbon atoms in different chemical environments using soft x-ray resonance at the carbon edge. Because carbon-containing samples absorb strongly in this region, the scattering length density depends on both the real and imaginary parts of the atomic scattering factors. Using a model polymer film of poly(styrene-b-methyl methacrylate), we show that the soft x-ray reflectivity data is much more sensitive to these atomic scattering factors than the soft x-ray scattering data. Nevertheless, fits to both types of data yield useful morphological details on the polymer?slamellar structure that are consistent with each other and with literature values.

  18. System for phase-contrast x-ray radiography using X pinch radiation and a method thereof

    DOE Patents [OSTI]

    Chandler, Katherine; Chelkovenko, Tatiana; Hammer, David; Pikuz, Sergei; Sinars, Daniel; Song, Byungmoo

    2007-11-06

    A radiograph system with an anode plate, a cathode plate, and a power source coupled to said anode plate and the cathode plate. At least two wires coupled between the anode plate and the cathode plate provide a configuration to form an X-pinch having a photon source size of less than five microns at energies above 2.5 keV. Material at the configuration forming the X-pinch vaporizes upon application of a suitable current to the wires forming a dense hot plasma and emitting a single x-ray pulse with sufficient photons having energies in the range of from about 2.5 keV to about 20 keV to provide a phase contrast image of an object in the path of the photons. Multiple simultaneous images may be formed of a plurality of objects. Suitable filters and x-ray detectors are provided.

  19. Simulations of x-ray speckle-based dark-field and phase-contrast imaging with a polychromatic beam

    SciTech Connect (OSTI)

    Zdora, Marie-Christine; Thibault, Pierre; Pfeiffer, Franz; Zanette, Irene

    2015-09-21

    Following the first experimental demonstration of x-ray speckle-based multimodal imaging using a polychromatic beam [I. Zanette et al., Phys. Rev. Lett. 112(25), 253903 (2014)], we present a simulation study on the effects of a polychromatic x-ray spectrum on the performance of this technique. We observe that the contrast of the near-field speckles is only mildly influenced by the bandwidth of the energy spectrum. Moreover, using a homogeneous object with simple geometry, we characterize the beam hardening artifacts in the reconstructed transmission and refraction angle images, and we describe how the beam hardening also affects the dark-field signal provided by speckle tracking. This study is particularly important for further implementations and developments of coherent speckle-based techniques at laboratory x-ray sources.

  20. Measurement and simulation of ICRF wave intensity with a recalibrated phase contrast imaging diagnostic on Alcator C-Mod

    SciTech Connect (OSTI)

    Tsujii, N.; Porkolab, M.; Bonoli, P. T.; Edlund, E. M.; Ennever, P. C.; Lin, Y.; Wright, J. C.; Wukitch, S. J.; Jaeger, E. F.; Green, D. L.; Harvey, R. W.

    2015-12-10

    Waves in the ion cyclotron range of frequencies (ICRF) are one of the major tools to heat fusion plasmas. Full-wave simulations are essential to predict the wave propagation and absorption quantitatively, and it is important that these codes be validated against actual experimental measurements. In this work, the absolute intensity of the ICRF waves previously measured with a phase contrast imaging diagnostic was recalibrated and compared once more with full-wave predictions. In the earlier work, significant discrepancies were found between the measured and the simulated mode converted wave intensity [N. Tsujii et al., Phys. Plasmas 19, 082508]. With the new calibration of the detector array, the measured mode converted wave intensity is now in much better agreement with the full-wave predictions. The agreement is especially good for comparisons performed close to the antenna.

  1. Hepatic injury induces contrasting response in liver and kidney to chemicals that are metabolically activated: Role of male sex hormone

    SciTech Connect (OSTI)

    Kim, Young C. [College of Pharmacy, Seoul National University, San 56-1 Shinrim-Dong, Kwanak-Ku, Seoul (Korea, Republic of)], E-mail: youckim@snu.ac.kr; Yim, Hye K.; Jung, Young S. [College of Pharmacy, Seoul National University, San 56-1 Shinrim-Dong, Kwanak-Ku, Seoul (Korea, Republic of); Park, Jae H. [College of Veterinary Medicine, Seoul National University, San 56-1 Shinrim-Dong, Kwanak-Ku, Seoul (Korea, Republic of); Kim, Sung Y. [College of Pharmacy, Wonkwang University, 344-2 Shinyong-Dong, Iksan (Korea, Republic of)

    2007-08-15

    Injury to liver, resulting in loss of its normal physiological/biochemical functions, may adversely affect a secondary organ. We examined the response of the liver and kidney to chemical substances that require metabolic activation for their toxicities in mice with a preceding liver injury. Carbon tetrachloride treatment 24 h prior to a challenging dose of carbon tetrachloride or acetaminophen decreased the resulting hepatotoxicity both in male and female mice as determined by histopathological examination and increases in serum enzyme activities. In contrast, the renal toxicity of the challenging toxicants was elevated markedly in male, but not in female mice. Partial hepatectomy also induced similar changes in the hepatotoxicity and nephrotoxicity of a challenging toxicant, suggesting that the contrasting response of male liver and kidney was associated with the reduction of the hepatic metabolizing capacity. Carbon tetrachloride pretreatment or partial hepatectomy decreased the hepatic xenobiotic-metabolizing enzyme activities in both sexes but elevated the renal p-nitrophenol hydroxylase, p-nitroanisole O-demethylase and aminopyrine N-demethylase activities significantly only in male mice. Increases in Cyp2e1 and Cyp2b expression were also evident in male kidney. Castration of males or testosterone administration to females diminished the sex-related differences in the renal response to an acute liver injury. The results indicate that reduction of the hepatic metabolizing capacity induced by liver injury may render secondary target organs susceptible to chemical substances activated in these organs. This effect may be sex-specific. It is also suggested that an integrated approach should be taken for proper assessment of chemical hazards.

  2. Pretreatment Evaluation of Microcirculation by Dynamic Contrast-Enhanced Magnetic Resonance Imaging Predicts Survival in Primary Rectal Cancer Patients

    SciTech Connect (OSTI)

    DeVries, Alexander Friedrich; Piringer, Gudrun; Kremser, Christian; Judmaier, Werner; Saely, Christoph Hubert; Lukas, Peter; Öfner, Dietmar

    2014-12-01

    Purpose: To investigate the prognostic value of the perfusion index (PI), a microcirculatory parameter estimated from dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI), which integrates information on both flow and permeability, to predict overall survival and disease-free survival in patients with primary rectal cancer. Methods and Materials: A total of 83 patients with stage cT3 rectal cancer requiring neoadjuvant chemoradiation were investigated with DCE-MRI before start of therapy. Contrast-enhanced dynamic T{sub 1} mapping was obtained, and a simple data analysis strategy based on the calculation of the maximum slope of the tissue concentration–time curve divided by the maximum of the arterial input function was used as a measure of tumor microcirculation (PI), which integrates information on both flow and permeability. Results: In 39 patients (47.0%), T downstaging (ypT0-2) was observed. During a mean (±SD) follow-up period of 71 ± 29 months, 58 patients (69.9%) survived, and disease-free survival was achieved in 45 patients (54.2%). The mean PI (PImean) averaged over the group of nonresponders was significantly higher than for responders. Additionally, higher PImean in age- and gender-adjusted analyses was strongly predictive of therapy nonresponse. Most importantly, PImean strongly and significantly predicted disease-free survival (unadjusted hazard ratio [HR], 1.85 [ 95% confidence interval, 1.35-2.54; P<.001)]; HR adjusted for age and sex, 1.81 [1.30-2.51]; P<.001) as well as overall survival (unadjusted HR 1.42 [1.02-1.99], P=.040; HR adjusted for age and sex, 1.43 [1.03-1.98]; P=.034). Conclusions: This analysis identifies PImean as a novel biomarker that is predictive for therapy response, disease-free survival, and overall survival in patients with primary locally advanced rectal cancer.

  3. Multiphoton photoluminescence contrast in switched Mg:LiNbO{sub 3} and Mg:LiTaO{sub 3} single crystals

    SciTech Connect (OSTI)

    Reichenbach, P., E-mail: philipp.reichenbach@iapp.de; Kmpfe, T.; Thiessen, A.; Haumann, A.; Eng, L. M. [Institut fr Angewandte Photophysik, Technische Universitt Dresden, George-Bhr-Str. 1, 01069 Dresden (Germany); Woike, T. [Institut fr Strukturphysik, Technische Universitt Dresden, Zellescher Weg 16, 01069 Dresden (Germany)

    2014-09-22

    We observed a multiphoton luminescence contrast between virgin and single-switched domains in Mg-doped LiNbO{sub 3} (LNO) and LiTaO{sub 3} (LTO) single crystals with different doping levels of 07?mol. % and 08?mol. %, respectively. A luminescence contrast in the range of 3% was measured between as-grown and electrically inverted domain areas in Mg:LNO samples, while the contrast reaches values of up to 30% for the Mg:LTO case. Under annealing, an exponential decay of the domain contrast was observed. The activation energy of about 1?eV being determined for the decay allowed a comparison with reported activation energies of associated defects, clearly illustrating a strong connection between thermal contrast decay and the H{sup +} and Li{sup +}-ion mobility. Finally, performing similar experiments on oxidized samples undoubtedly demonstrated that the origin of the reported luminescence contrast is strongly connected with lithium ions.

  4. Voila: A visual object-oriented iterative linear algebra problem solving environment

    SciTech Connect (OSTI)

    Edwards, H.C.; Hayes, L.J.

    1994-12-31

    Application of iterative methods to solve a large linear system of equations currently involves writing a program which calls iterative method subprograms from a large software package. These subprograms have complex interfaces which are difficult to use and even more difficult to program. A problem solving environment specifically tailored to the development and application of iterative methods is needed. This need will be fulfilled by Voila, a problem solving environment which provides a visual programming interface to object-oriented iterative linear algebra kernels. Voila will provide several quantum improvements over current iterative method problem solving environments. First, programming and applying iterative methods is considerably simplified through Voila`s visual programming interface. Second, iterative method algorithm implementations are independent of any particular sparse matrix data structure through Voila`s object-oriented kernels. Third, the compile-link-debug process is eliminated as Voila operates as an interpreter.

  5. Have Green – A Visual Analytics Framework for Large Semantic Graphs

    SciTech Connect (OSTI)

    Wong, Pak C.; Chin, George; Foote, Harlan P.; Mackey, Patrick S.; Thomas, James J.

    2006-10-29

    A semantic graph is a network of heterogeneous nodes and links annotated with a domain ontology. In intelligence analysis, investigators use semantic graphs to organize concepts and relationships as graph nodes and links in hopes of discovering key trends, patterns, and insights. However, as new information continues to arrive from a multitude of sources, the size and complexity of the semantic graphs will soon overwhelm an investigator's cognitive capacity to carry out significant analyses. We introduce a powerful visual analytics framework designed to enhance investigators--natural analytical capabilities to comprehend and analyze large semantic graphs. The paper describes the overall framework design, presents major development accomplishments to date, and discusses future directions of a new visual analytics system known as Have Green.

  6. Cactus and Visapult: A case study of ultra-high performance distributed visualization using connectionless protocols

    SciTech Connect (OSTI)

    Shalf, John; Bethel, E. Wes

    2002-05-07

    This past decade has seen rapid growth in the size, resolution, and complexity of Grand Challenge simulation codes. Many such problems still require interactive visualization tools to make sense of multi-terabyte data stores. Visapult is a parallel volume rendering tool that employs distributed components, latency tolerant algorithms, and high performance network I/O for effective remote visualization of massive datasets. In this paper we discuss using connectionless protocols to accelerate Visapult network I/O and interfacing Visapult to the Cactus General Relativity code to enable scalable remote monitoring and steering capabilities. With these modifications, network utilization has moved from 25 percent of line-rate using tuned multi-streamed TCP to sustaining 88 percent of line rate using the new UDP-based transport protocol.

  7. GRIZ: Finite element analysis results visualization for unstructured grids. User manual

    SciTech Connect (OSTI)

    Dovey, D.J.; Spelce, T.E.

    1993-10-01

    GRIZ supports interactive visualization of finite element analysis results on unstructured grids. GRIZ is a general-purpose post-processing application which is designed to work with a variety of an analysis codes. Currently, GRIZ is capable of calculating and displaying derived variables for the DYNA3D, NIKE3D and TOPAZ3D analysis codes. GRIZ reads in data files in the ``MDG plotfile`` format. GRIZ provides support for modern 3D visualization techniques such as isosurface display, cutting planes and display of vector data. GRIZ also incorporates the ability to animate data over time and to store animation frames to a video disk. GRIZ is designed to utilize the capabilities of modern graphics workstations which provide hardware support for 3D graphics, thereby giving the user as much interactive performance as possible. This should make it easier for analysts to explore and interrogate their analysis results.

  8. Big Data Analaysis and Visualization: What Do LINACS and Tropical Storms Have In Common?

    SciTech Connect (OSTI)

    Bethel, E. Wes; Byna, Suren; Chou, Jerry; Cormier-Michel, Estelle; Geddes, Cameron G. R.; Howison, Mark; Li, Fuyu; Qiang, Ji; Ruebel, Oliver; Ryne, Rob D.; Wehner, Michael; Wu, Kesheng

    2012-08-28

    While there is wisdom in the old adage "the two constants in life are death and taxes,'' there are unavoidable truths facing modern experimental and computational science. First is the growing "impedance mismatch'' between our ability to collect and generate data, and our ability to store, manage, and gain understanding from it. The second is the fact that we cannot continue to rely on the same software technologies that have worked well for the past couple of decades for data management, analysis, and visualization. A third is that these complementary activities must be considered in a holistic, rather than Balkanized way. The inseparable interplay between data management, analysis, visualization, and high performance computational infrastructure, are best viewed through the lens of case studies from multiple scientific domains, where teams of computer and scientists combine forces to tackle challenging data understanding problems.

  9. Text Stream Trend Analysis using Multiscale Visual Analytics with Applications to Social Media Systems

    SciTech Connect (OSTI)

    Steed, Chad A; Beaver, Justin M; BogenII, Paul L.; Drouhard, Margaret MEG G; Pyle, Joshua M

    2015-01-01

    In this paper, we introduce a new visual analytics system, called Matisse, that allows exploration of global trends in textual information streams with specific application to social media platforms. Despite the potential for real-time situational awareness using these services, interactive analysis of such semi-structured textual information is a challenge due to the high-throughput and high-velocity properties. Matisse addresses these challenges through the following contributions: (1) robust stream data management, (2) automated sen- timent/emotion analytics, (3) inferential temporal, geospatial, and term-frequency visualizations, and (4) a flexible drill-down interaction scheme that progresses from macroscale to microscale views. In addition to describing these contributions, our work-in-progress paper concludes with a practical case study focused on the analysis of Twitter 1% sample stream information captured during the week of the Boston Marathon bombings.

  10. iGlobe: an interactive visualization and analysis framework for geospatial data

    SciTech Connect (OSTI)

    Chandola, Varun; Vatsavai, Raju; Bhaduri, Budhendra L

    2011-01-01

    We demonstrate an interactive visualization and analysis system for integrating climate data with other geospatial data sets, such as environmental and demographic data. The \\eviz system is a desktop-based visualization and analysis environment which allows seamless integration of multiple geospatial data sets from varied sources and provides an interface to interactively analyze the different data sets and apply sophisticated data analysis and mining algorithms in a near real time fashion. The framework is highly desirable in domains such as earth and climate sciences where great emphasis is placed on simultaneous analysis of different data sets such as remote sensing images, climate model simulation outputs, and other environmental and demographic databases, to understand weather and climate systems and the impact of climate change on nature and people.

  11. Interactive Poster: A Proposal for Sharing User Requirements for Visual Analytic Tools

    SciTech Connect (OSTI)

    Scholtz, Jean

    2009-10-11

    Although many in the community have advocated user-centered evaluations for visual analytic environments, a significant barrier exists. The users targeted by the visual analytics community (law enforcement personnel, professional information analysts, financial analysts, health care analysts, etc.) are often inaccessible to researchers. These analysts are extremely busy and their work environments and data are often classified or at least confidential. Furthermore, their tasks often last weeks or even months. It is simply not feasible to do such long-term observations to understand their jobs. How then can we hope to gather enough information about the diverse user populations to understand their needs? Some researchers have been successful in working with different end-users, including the author. A reasonable approach, therefore, would be to find a way to share user information. This paper outlines a proposal for developing a handbook of user profiles for use by researchers, developers, and evaluators.

  12. Pathways to Identity: Aiding Law Enforcement in Identification Tasks With Visual Analytics

    SciTech Connect (OSTI)

    Bruce, Joseph R.; Scholtz, Jean; Hodges, Duncan; Emanuel, Lia; Stanton-Fraser, Danae; Creese, Sadie; Love, Oriana J.

    2014-09-18

    The nature of identity has changed dramatically in recent years, and has grown in complexity. Identities are defined in multiple domains: biological and psychological elements strongly contribute, but also biographical and cyber elements are necessary to complete the picture. Law enforcement is beginning to adjust to these changes, recognizing its importance in criminal justice. The SuperIdentity project seeks to aid law enforcement officials in their identification tasks through research of techniques for discovering identity traits, generation of statistical models of identity and analysis of identity traits through visualization. We present use cases compiled through user interviews in multiple fields, including law enforcement, as well as the modeling and visualization tools design to aid in those use cases.

  13. Pathways to Identity. Using Visualization to Aid Law Enforcement in Identification Tasks

    SciTech Connect (OSTI)

    Bruce, Joseph R.; Scholtz, Jean; Hodges, Duncan; Emanuel, Lia; Stanton Fraser, Danae; Creese, Sadie; Love, Oriana J.

    2014-09-18

    The nature of identity has changed dramatically in recent years and has grown in complexity. Identities are defined in multiple domains: biological and psychological elements strongly contribute, but biographical and cyber elements also are necessary to complete the picture. Law enforcement is beginning to adjust to these changes, recognizing identity’s importance in criminal justice. The SuperIdentity project seeks to aid law enforcement officials in their identification tasks through research of techniques for discovering identity traits, generation of statistical models of identity and analysis of identity traits through visualization. We present use cases compiled through user interviews in multiple fields, including law enforcement, and describe the modeling and visualization tools design to aid in those use cases.

  14. Visualizing the Onset of "Heavy Electron" Superconductivity | U.S. DOE

    Office of Science (SC) Website

    Office of Science (SC) Visualizing the Onset of "Heavy Electron" Superconductivity Basic Energy Sciences (BES) BES Home About Research Facilities Science Highlights Benefits of BES Funding Opportunities Basic Energy Sciences Advisory Committee (BESAC) Community Resources Contact Information Basic Energy Sciences U.S. Department of Energy SC-22/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3081 F: (301) 903-6594 E: Email Us More Information »

  15. Nucleation and Growth of Electrodeposited ZnO Visualized by in-Situ X-ray

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Microscopy | Stanford Synchrotron Radiation Lightsource Nucleation and Growth of Electrodeposited ZnO Visualized by in-Situ X-ray Microscopy Thursday, June 30, 2016 Electrodeposition (ED) of ZnO has been widely used to deposit transparent conducting films for optoelectronic applications. The film quality, and consequently the performance of the film, is highly dependent on both the nucleation and growth of ZnO. Current studies employ ex-situ experiments where the film is deposited, dried,

  16. SCIENCE ON SATURDAY-"Visualizing the Atomic World" | Princeton Plasma

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Physics Lab 2, 2013, 9:30am Science On Saturday MBG Auditorium SCIENCE ON SATURDAY-"Visualizing the Atomic World" Professor Udo Schwarz Department of Mechanical Engineering & Materials Science and Department of Chemical & Environmental Engineering, Yale University Presentation: Office presentation icon SOS12JAN2013_UDSchwarz.ppt Abstract: PDF icon U.Schwarz.pdf Science on Saturday is a series of lectures given by scientists, mathematicians, and other professionals involved

  17. MO-E-18C-06: Enriching Medical Physics Education By Visualizing The Invisible

    SciTech Connect (OSTI)

    Sprawls, P

    2014-06-15

    Purpose: To enhance the understanding of medical physics concepts and develop higher levels of learning relating to invisible physics phenomena such as radiation. To provide medical physics educators in all countries of the world with understanding of knowledge structures in the human brain, the different levels of learning, and the types of knowledge required for higher level functions such as problem solving, creative innovations, and applied clinical applications. To provide medical physics educators with an open access resource (tool) that they can use in their teaching activities to enrich and elevate the level of learning for their students, residents, etc. with respect to the invisible realm of medical physics. Methods: An experienced clinical medical physicist and educator has created and provided with open access three complementary web-based resources to achieve the purposes described above. One is a module focusing on the medical physics learning process with respect to mental knowledge structures, how they relate to outcomes and applications, and learning activities that are required to develop the required knowledge structures. The second is an extensive set of visuals that educators can use in their activities (classes, small group discussions, etc.) to visualize the invisible. The third is an interactive online simulation where learners can adjust factors and visually observe changes in x-radiation.These resources are available online at www.BLINDED FOR REVIEW . Results: Medical physics education, especially for non-physicists, is becoming much more interesting and useful especially with respect to invisible radiation. The global impact is that medical imaging professionals can be more effective in optimizing x-ray imaging procedures and risk management when they have knowledge levels that enhance problem solving, innovation, and creativity. Conclusion: Medical physics educators in all institutions can be much more effective and efficient in the

  18. An Assessment of Remote Visual Methods to Detect Cracking in Reactor Components

    SciTech Connect (OSTI)

    Cumblidge, Stephen E.; Anderson, Michael T.; Doctor, Steven R.; Simonen, Fredric A.; Elliot, Anthony J.

    2008-01-01

    Recently, the U.S. nuclear industry has proposed replacing current volumetric and/or surface examinations of certain components in commercial nuclear power plants, as required by the American Society of Mechanical Engineers Boiler and Pressure Vessel Code Section XI, “Inservice Inspection of Nuclear Power Plant Components,” with a simpler visual testing (VT) method. The advantages of VT are that these tests generally involve much less radiation exposure and time to perform the examination than do volumetric examinations such as ultrasonic testing. The issues relative to the reliability of VT in determining the structural integrity of reactor components were examined. Some piping and pressure vessel components in a nuclear power station are examined using VT as they are either in high radiation fields or component geometry precludes the use of ultrasonic testing (UT) methodology. Remote VT with radiation-hardened video systems has been used by nuclear utilities to find cracks in pressure vessel cladding in pressurized water reactors, core shrouds in boiling water reactors, and to investigate leaks in piping and reactor components. These visual tests are performed using a wide variety of procedures and equipment. The techniques for remote VT use submersible closed-circuit video cameras to examine reactor components and welds. PNNL conducted a parametric study that examined the important variables influencing the effectiveness of a remote visual test. Tested variables included lighting techniques, camera resolution, camera movement, and magnification. PNNL also conducted a limited laboratory test using a commercial visual testing camera system to experimentally determine the ability of the camera system to detect cracks of various widths under ideal conditions. The results of these studies and their implications are presented in this paper.

  19. VisIt: An End-User Tool for Visualizing and Analyzing Very Large Data

    SciTech Connect (OSTI)

    Childs, Hank; Brugger, Eric; Whitlock, Brad; Meredith, Jeremy; Ahern, Sean; Pugmire, David; Biagas, Kathleen; Miller, Mark; Weber, Gunther H.; Krishnan, Hari; Fogal, Thomas; Sanderson, Allen; Garth, Christoph; Bethel, E. Wes; Camp, David; Ruebel, Oliver; Durant, Marc; Favre, Jean; Navratil, Paul

    2012-11-01

    VisIt is a popular open source tool for visualizing and analyzing big data. It owes its success to its foci of increasing data understanding, large data support, and providing a robust and usable product, as well as its underlying design that fits today's supercomputing landscape. This report, which draws heavily from an earlier publication at the SciDAC Conference in 2011 describes the VisIt project and its accomplishments.

  20. Sandia Wins Funding for Programming In Situ Data Analysis/Visualization

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Programming In Situ Data Analysis/Visualization - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Energy Defense Waste

  1. Visualization of Fuel Cell Water Transport and Characterization under Freezing Conditions

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Visualization of Fuel Cell Water Transport and Characterization under Freezing Conditions Project Sponsored by: Department of Energy Satish Kandlikar, RIT Thomas Trabold, GM Jeffrey Allen, MTU February 13, 2007 This presentation does not contain any proprietary or confidential information. Water Management Issues, PEMFC Excessive Water -Block reaction sites -Saturate diffusion media -Clog gas channels Zhang et al., 2006. Yamada et al., 2006. Insufficient Water - Reduced Membrane proton

  2. Communication library for run-time visualization of distributed, asynchronous data

    SciTech Connect (OSTI)

    Rowlan, J.; Wightman, B.T.

    1994-04-01

    In this paper we present a method for collecting and visualizing data generated by a parallel computational simulation during run time. Data distributed across multiple processes is sent across parallel communication lines to a remote workstation, which sorts and queues the data for visualization. We have implemented our method in a set of tools called PORTAL (for Parallel aRchitecture data-TrAnsfer Library). The tools comprise generic routines for sending data from a parallel program (callable from either C or FORTRAN), a semi-parallel communication scheme currently built upon Unix Sockets, and a real-time connection to the scientific visualization program AVS. Our method is most valuable when used to examine large datasets that can be efficiently generated and do not need to be stored on disk. The PORTAL source libraries, detailed documentation, and a working example can be obtained by anonymous ftp from info.mcs.anl.gov from the file portal.tar.Z from the directory pub/portal.

  3. Characterizing Provenance in Visualization and Data Analysis: An Organizational Framework of Provenance Types and Purposes

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Ragan, Eric; Alex, Endert; Sanyal, Jibonananda; Chen, Jian

    2016-01-01

    While the primary goal of visual analytics research is to improve the quality of insights and findings, a substantial amount of research in provenance has focused on the history of changes and advances throughout the analysis process. The term, provenance, has been used in a variety of ways to describe different types of records and histories related to visualization. The existing body of provenance research has grown to a point where the consolidation of design knowledge requires cross-referencing a variety of projects and studies spanning multiple domain areas. We present an organizational framework of the different types of provenance informationmore » and purposes for why they are desired in the field of visual analytics. Our organization is intended to serve as a framework to help researchers specify types of provenance and coordinate design knowledge across projects. We also discuss the relationships between these factors and the methods used to capture provenance information. In addition, our organization can be used to guide the selection of evaluation methodology and the comparison of study outcomes in provenance research« less

  4. Visualizing Life Zone Boundary Sensitivities Across Climate Models and Temporal Spans

    SciTech Connect (OSTI)

    Sisneros, Roberto R; Huang, Jian; Ostrouchov, George; Hoffman, Forrest M

    2011-01-01

    Life zones are a convenient and quantifiable method for delineating areas with similar plant and animal communities based on bioclimatic conditions. Such ecoregionalization techniques have proved useful for defining habitats and for studying how these habitats may shift due to environmental change. The ecological impacts of climate change are of particular interest. Here we show that visualizations of the geographic projection of life zones may be applied to the investigation of potential ecological impacts of climate change using the results of global climate model simulations. Using a multi-factor classification scheme, we show how life zones change over time based on quantitative model results into the next century. Using two straightforward metrics, we identify regions of high sensitivity to climate changes from two global climate simulations under two different greenhouse gas emissions scenarios. Finally, we identify how preferred human habitats may shift under these scenarios. We apply visualization methods developed for the purpose of displaying multivariate relationships within data, especially for situations that involve a large number of concurrent relationships. Our method is based on the concept of multivariate classification, and is implemented directly in VisIt, a production quality visualization package.

  5. Visual language recognition with a feed-forward network of spiking neurons

    SciTech Connect (OSTI)

    Rasmussen, Craig E; Garrett, Kenyan; Sottile, Matthew; Shreyas, Ns

    2010-01-01

    An analogy is made and exploited between the recognition of visual objects and language parsing. A subset of regular languages is used to define a one-dimensional 'visual' language, in which the words are translational and scale invariant. This allows an exploration of the viewpoint invariant languages that can be solved by a network of concurrent, hierarchically connected processors. A language family is defined that is hierarchically tiling system recognizable (HREC). As inspired by nature, an algorithm is presented that constructs a cellular automaton that recognizes strings from a language in the HREC family. It is demonstrated how a language recognizer can be implemented from the cellular automaton using a feed-forward network of spiking neurons. This parser recognizes fixed-length strings from the language in parallel and as the computation is pipelined, a new string can be parsed in each new interval of time. The analogy with formal language theory allows inferences to be drawn regarding what class of objects can be recognized by visual cortex operating in purely feed-forward fashion and what class of objects requires a more complicated network architecture.

  6. Matisse: A Visual Analytics System for Exploring Emotion Trends in Social Media Text Streams

    SciTech Connect (OSTI)

    Steed, Chad A; Drouhard, Margaret MEG G; Beaver, Justin M; Pyle, Joshua M; BogenII, Paul L.

    2015-01-01

    Dynamically mining textual information streams to gain real-time situational awareness is especially challenging with social media systems where throughput and velocity properties push the limits of a static analytical approach. In this paper, we describe an interactive visual analytics system, called Matisse, that aids with the discovery and investigation of trends in streaming text. Matisse addresses the challenges inherent to text stream mining through the following technical contributions: (1) robust stream data management, (2) automated sentiment/emotion analytics, (3) interactive coordinated visualizations, and (4) a flexible drill-down interaction scheme that accesses multiple levels of detail. In addition to positive/negative sentiment prediction, Matisse provides fine-grained emotion classification based on Valence, Arousal, and Dominance dimensions and a novel machine learning process. Information from the sentiment/emotion analytics are fused with raw data and summary information to feed temporal, geospatial, term frequency, and scatterplot visualizations using a multi-scale, coordinated interaction model. After describing these techniques, we conclude with a practical case study focused on analyzing the Twitter sample stream during the week of the 2013 Boston Marathon bombings. The case study demonstrates the effectiveness of Matisse at providing guided situational awareness of significant trends in social media streams by orchestrating computational power and human cognition.

  7. An Interactive Visual Analytics Framework for Multi-Field Data in a Geo-Spatial Context

    SciTech Connect (OSTI)

    Zhang, Zhiyuan; Tong, Xiaonan; McDonnell, Kevin T.; Zelenyuk, Alla; Imre, D.; Mueller, Klaus

    2013-04-01

    Climate research produces a wealth of multivariate data. These data often have a geospatial reference and so it is of interest to show them within their geospatial context. One can consider this configuration as a multi field visualization problem, where the geospace provides the expanse of the field. However, there is a limit on the amount of multivariate information that can be fit within a certain spatial location, and the use of linked multivari ate information displays has previously been devised to bridge this gap. In this paper we focus on the interactions in the geographical display, present an implementation that uses Google Earth, and demonstrate it within a tightly linked parallel coordinates display. Several other visual representations, such as pie and bar charts are integrated into the Google Earth display and can be interactively manipulated. Further, we also demonstrate new brushing and visualization techniques for parallel coordinates, such as fixedwindow brushing and correlationenhanced display. We conceived our system with a team of climate researchers, who already made a few important discov eries using it. This demonstrates our system’s great potential to enable scientific discoveries, possibly also in oth er domains where data have a geospatial reference.

  8. Interactive visual comparison of multimedia data through type-specific views

    SciTech Connect (OSTI)

    Burtner, Edwin R.; Bohn, Shawn J.; Payne, Deborah A.

    2013-02-05

    Analysts who work with collections of multimedia to perform information foraging understand how difficult it is to connect information across diverse sets of mixed media. The wealth of information from blogs, social media, and news sites often can provide actionable intelligence; however, many of the tools used on these sources of content are not capable of multimedia analysis because they only analyze a single media type. As such, analysts are taxed to keep a mental model of the relationships among each of the media types when generating the broader content picture. To address this need, we have developed Canopy, a novel visual analytic tool for analyzing multimedia. Canopy provides insight into the multimedia data relationships by exploiting the linkages found in text, images, and video co-occurring in the same document and across the collection. Canopy connects derived and explicit linkages and relationships through multiple connected visualizations to aid analysts in quickly summarizing, searching, and browsing collected information to explore relationships and align content. In this paper, we will discuss the features and capabilities of the Canopy system and walk through a scenario illustrating how this system might be used in an operational environment. Keywords: Multimedia (Image/Video/Music) Visualization.

  9. A Space-Filling Visualization Technique for Multivariate Small World Graphs

    SciTech Connect (OSTI)

    Wong, Pak C.; Foote, Harlan P.; Mackey, Patrick S.; Chin, George; Huang, Zhenyu; Thomas, James J.

    2012-03-15

    We introduce an information visualization technique, known as GreenCurve, for large sparse graphs that exhibit small world properties. Our fractal-based design approach uses spatial cues to approximate the node connections and thus eliminates the links between the nodes in the visualization. The paper describes a sophisticated algorithm to order the neighboring nodes of a large sparse graph by solving the Fiedler vector of its graph Laplacian, and then fold the graph nodes into a space-filling fractal curve based on the Fiedler vector. The result is a highly compact visualization that gives a succinct overview of the graph with guaranteed visibility of every graph node. We show in the paper that the GreenCurve technology is (1) theoretically sustainable by introducing an error estimation metric to measure the fidelity of the new graph representation, (2) empirically rigorous by conducting a usability study to investigate its strengths and weaknesses against the traditional graph layout, and (3) pragmatically feasible by applying it to analyze stressed conditions of the large scale electric power grid on the west coast.

  10. Cherenkov Video Imaging Allows for the First Visualization of Radiation Therapy in Real Time

    SciTech Connect (OSTI)

    Jarvis, Lesley A.; Zhang, Rongxiao; Gladstone, David J.; Jiang, Shudong; Hitchcock, Whitney; Friedman, Oscar D.; Glaser, Adam K.; Jermyn, Michael; Pogue, Brian W.

    2014-07-01

    Purpose: To determine whether Cherenkov light imaging can visualize radiation therapy in real time during breast radiation therapy. Methods and Materials: An intensified charge-coupled device (CCD) camera was synchronized to the 3.25-μs radiation pulses of the clinical linear accelerator with the intensifier set × 100. Cherenkov images were acquired continuously (2.8 frames/s) during fractionated whole breast irradiation with each frame an accumulation of 100 radiation pulses (approximately 5 monitor units). Results: The first patient images ever created are used to illustrate that Cherenkov emission can be visualized as a video during conditions typical for breast radiation therapy, even with complex treatment plans, mixed energies, and modulated treatment fields. Images were generated correlating to the superficial dose received by the patient and potentially the location of the resulting skin reactions. Major blood vessels are visible in the image, providing the potential to use these as biological landmarks for improved geometric accuracy. The potential for this system to detect radiation therapy misadministrations, which can result from hardware malfunction or patient positioning setup errors during individual fractions, is shown. Conclusions: Cherenkoscopy is a unique method for visualizing surface dose resulting in real-time quality control. We propose that this system could detect radiation therapy errors in everyday clinical practice at a time when these errors can be corrected to result in improved safety and quality of radiation therapy.

  11. Volume Visualization

    Office of Scientific and Technical Information (OSTI)

    ... and the similarity plot for the two fish species, which is mapped to the blue channel. ... are conserved regions in the human-mouse-chicken plot that are absent in the fish plot. ...

  12. Data Visualization

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    XY plots, labeling, and more. The NCAR Command Language (NCL) is a full programming language used for data selection, manipulation, and display. Read More Last edited: ...

  13. Phase-Contrast MRI and CFD Modeling of Apparent 3He Gas Flow in Rat Pulmonary Airways

    SciTech Connect (OSTI)

    Minard, Kevin R.; Kuprat, Andrew P.; Kabilan, Senthil; Jacob, Rick E.; Einstein, Daniel R.; Carson, James P.; Corley, Richard A.

    2012-08-01

    Phase-contrast (PC) magnetic resonance imaging (MRI) with hyperpolarized 3He is potentially useful for developing and testing patient-specific models of pulmonary airflow. One challenge, however, is that PC-MRI provides apparent values of local 3He velocity that not only depend on actual airflow but also on gas diffusion. This not only blurs laminar flow patterns in narrow airways but also introduces anomalous airflow structure that reflects gas-wall interactions. Here, both effects are predicted in a live rat using computational fluid dynamics (CFD), and for the first time, simulated patterns of apparent 3He gas velocity are compared with in-vivo PC-MRI. Results show (1) that correlations (R2) between measured and simulated airflow patterns increase from 0.23 to 0.79 simply by accounting for apparent 3He transport, and that (2) remaining differences are mainly due to uncertain airway segmentation and partial volume effects stemming from relatively coarse MRI resolution. Higher-fidelity testing of pulmonary airflow predictions should therefore be possible with future imaging improvements.

  14. 1,2-Hydroxypyridonates as Contrast Agents for Magnetic ResonanceImaging: TREN-1,2-HOPO

    SciTech Connect (OSTI)

    Jocher, Christoph J.; Moore, Evan G.; Xu, Jide; Avedano, Stefano; Botta, Mauro; Aime, Silvio; Raymond, Kenneth N.

    2007-05-08

    1,2-Hydroxypyridinones (1,2-HOPO) form very stable lanthanide complexes that may be useful as contrast agents for Magnetic Resonance Imaging (MRI). X-ray diffraction of single crystals established that the solid state structures of the Eu(III) and the previously reported [Inorg. Chem. 2004, 43, 5452] Gd(III) complex are identical. The recently discovered sensitizing properties of 1,2-HOPO chelates for Eu(III) luminescence allow direct measurement of the number if water molecules in the metal complex. Fluorescence measurements of the Eu(III) complex corroborate that in solution two water molecules coordinate the lanthanide (q = 2) as proposed from the analysis of NMRD profiles. In addition, fluorescence measurements have verified the anion binding interactions of lanthanide TREN-1,2-HOPO complexes in solution, studied by relaxivity, revealing only very weak oxalate binding (K{sub A} = 82.7 {+-} 6.5 M{sup -1}). Solution thermodynamic studies of the metal complex and free ligand have been carried out using potentiometry, spectrophotometry and fluorescence spectroscopy. The metal ion selectivity of TREN-1,2-HOPO supports the feasibility of using 1,2-HOPO ligands for selective lanthanide binding [pGd = 19.3 (2); pZn = 15.2 (2), pCa = 8.8 (3)].

  15. X-ray Diffraction and Multi-Frame Phase Contrast Imaging Diagnostics for IMPULSE at the Advanced Photon Source

    SciTech Connect (OSTI)

    Iverson, Adam; Carlson, Carl; Young, Jason; Curtis, Alden; Jensen, Brian; Ramos, Kyle; Yeager, John; Montgomery, David; Fezza, Kamel

    2013-07-08

    The diagnostic needs of any dynamic loading platform present unique technical challenges that must be addressed in order to accurately measure in situ material properties in an extreme environment. The IMPULSE platform (IMPact system for Ultrafast Synchrotron Experiments) at the Advanced Photon Source (APS) is no exception and, in fact, may be more challenging, as the imaging diagnostics must be synchronized to both the experiment and the 60 ps wide x-ray bunches produced at APS. The technical challenges of time-resolved x-ray diffraction imaging and high-resolution multi-frame phase contrast imaging (PCI) are described in this paper. Example data from recent IMPULSE experiments are shown to illustrate the advances and evolution of these diagnostics with a focus on comparing the performance of two intensified CCD cameras and their suitability for multi-frame PCI. The continued development of these diagnostics is fundamentally important to IMPULSE and many other loading platforms and will benefit future facilities such as the Dynamic Compression Sector at APS and MaRIE at Los Alamos National Laboratory.

  16. Two-dimensional wave-number spectral analysis techniques for phase contrast imaging turbulence imaging data on large helical device

    SciTech Connect (OSTI)

    Michael, C. A.; Tanaka, K.; Kawahata, K.; Vyacheslavov, L.; Sanin, A.

    2015-09-15

    An analysis method for unfolding the spatially resolved wave-number spectrum and phase velocity from the 2D CO{sub 2} laser phase contrast imaging system on the large helical device is described. This is based on the magnetic shear technique which identifies propagation direction from 2D spatial Fourier analysis of images detected by a 6 × 8 detector array. Because the strongest modes have wave-number at the lower end of the instrumental k range, high resolution spectral techniques are necessary to clearly resolve the propagation direction and hence the spatial distribution of fluctuations along the probing laser beam. Multiple-spatial point cross-correlation averaging is applied before calculating the spatial power spectrum. Different methods are compared, and it is found that the maximum entropy method (MEM) gives best results. The possible generation of artifacts from the over-narrowing of spectra are investigated and found not to be a significant problem. The spatial resolution Δρ (normalized radius) around the peak wave-number, for conventional Fourier analysis, is ∼0.5, making physical interpretation difficult, while for MEM, Δρ ∼ 0.1.

  17. Simultaneous X-ray diffraction and phase-contrast imaging for investigating material deformation mechanisms during high-rate loading

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Hudspeth, M.; Sun, T.; Parab, N.; Guo, Z.; Fezzaa, K.; Luo, S.; Chen, W.

    2015-01-01

    Using a high-speed camera and an intensified charge-coupled device (ICCD), a simultaneous X-ray imaging and diffraction technique has been developed for studying dynamic material behaviors during high-rate tensile loading. A Kolsky tension bar has been used to pull samples at 1000 s–1and 5000 s–1strain-rates for super-elastic equiatomic NiTi and 1100-O series aluminium, respectively. By altering the ICCD gating time, temporal resolutions of 100 ps and 3.37 µs have been achieved in capturing the diffraction patterns of interest, thus equating to single-pulse and 22-pulse X-ray exposure. Furthermore, the sample through-thickness deformation process has been simultaneously imagedviaphase-contrast imaging. It is also shownmore » that adequate signal-to-noise ratios are achieved for the detected white-beam diffraction patterns, thereby allowing sufficient information to perform quantitative data analysis diffractionviain-house software (WBXRD_GUI). Finally, of current interest is the ability to evaluate crystald-spacing, texture evolution and material phase transitions, all of which will be established from experiments performed at the aforementioned elevated strain-rates.« less

  18. Visual Comfort Analysis of Innovative Interior and Exterior Shading Systems for Commercial Buildings using High Resolution Luminance Images

    SciTech Connect (OSTI)

    Konis, Kyle; Lee, Eleanor; Clear, Robert

    2011-01-11

    The objective of this study was to explore how calibrated high dynamic range (HDR) images (luminance maps) acquired in real world daylit environments can be used to characterize, evaluate, and compare visual comfort conditions of innovative facade shading and light-redirecting systems. Detailed (1536 x 1536 pixel) luminance maps were time-lapse acquired from two view positions in an unoccupied full scale testbed facility. These maps were analyzed using existing visual comfort metrics to quantify how innovative interior and exterior shading systems compare to conventional systems under real sun and sky conditions over a solstice-to-solstice test interval. The results provide a case study in the challenges and potential of methods of visualizing, evaluating and summarizing daily and seasonal variation of visual comfort conditions computed from large sets of image data.

  19. Visualizing Distributed Data with BigWig and BigBed at UCSC (2010 JGI/ANL HPC Workshop)

    ScienceCinema (OSTI)

    Kent, Jim [UCSC

    2011-06-08

    Jim Kent from University of California, Santa Cruz presents on "Visualizing Distributed Data with BigWig and BigBed at UCSC" at the JGI/Argonne HPC Workshop on January 26, 2010.

  20. Wetting state on hydrophilic and hydrophobic micro-textured surfaces: Thermodynamic analysis and X-ray visualization

    SciTech Connect (OSTI)

    Yu, Dong In; Kwak, Ho Jae; Doh, Seung Woo; Park, Hyun Sun Kiyofumi, Moriyama; Kang, Hie Chan; Ahn, Ho Seon; Kim, Moo Hwan

    2015-04-27

    In this study, the wetting state on hydrophobic and hydrophilic micro-textured surfaces was investigated. High spatial resolution synchrotron X-ray radiography was used to overcome the limitations in visualization in previous research and clearly visualize the wetting state for each droplet under quantified surface conditions. Based on thermodynamic characteristics, a theoretical model for wetting state depending on the chemical composition (intrinsic contact angle) and geometrical morphology (roughness ratio) of the surfaces was developed.

  1. Web-based, GPU-accelerated, Monte Carlo simulation and visualization of indirect radiation imaging detector performance

    SciTech Connect (OSTI)

    Dong, Han; Sharma, Diksha; Badano, Aldo

    2014-12-15

    Purpose: Monte Carlo simulations play a vital role in the understanding of the fundamental limitations, design, and optimization of existing and emerging medical imaging systems. Efforts in this area have resulted in the development of a wide variety of open-source software packages. One such package, hybridMANTIS, uses a novel hybrid concept to model indirect scintillator detectors by balancing the computational load using dual CPU and graphics processing unit (GPU) processors, obtaining computational efficiency with reasonable accuracy. In this work, the authors describe two open-source visualization interfaces, webMANTIS and visualMANTIS to facilitate the setup of computational experiments via hybridMANTIS. Methods: The visualization tools visualMANTIS and webMANTIS enable the user to control simulation properties through a user interface. In the case of webMANTIS, control via a web browser allows access through mobile devices such as smartphones or tablets. webMANTIS acts as a server back-end and communicates with an NVIDIA GPU computing cluster that can support multiuser environments where users can execute different experiments in parallel. Results: The output consists of point response and pulse-height spectrum, and optical transport statistics generated by hybridMANTIS. The users can download the output images and statistics through a zip file for future reference. In addition, webMANTIS provides a visualization window that displays a few selected optical photon path as they get transported through the detector columns and allows the user to trace the history of the optical photons. Conclusions: The visualization tools visualMANTIS and webMANTIS provide features such as on the fly generation of pulse-height spectra and response functions for microcolumnar x-ray imagers while allowing users to save simulation parameters and results from prior experiments. The graphical interfaces simplify the simulation setup and allow the user to go directly from specifying

  2. Effect of Intravascular Iodinated Contrast Media on Natural Course of End-Stage Renal Disease Progression in Hemodialysis Patients: A Prospective Study

    SciTech Connect (OSTI)

    Janousek, Radim; Krajina, Antonin; Peregrin, Jan H.; Dusilova-Sulkova, Sylvie; Renc, Ondrej; Hajek, Jan; Dvorak, Kamil; Fixa, Petr; Cermakova, Eva

    2010-02-15

    We evaluated the impact of intravascular iodinated contrast medium on residual diuresis in hemodialyzed patients. Two groups of clinically stable hemodialyzed patients with residual diuresis minimally 500 ml of urine per day were studied. The patients from the first group were given iso-osmolal contrast agent iodixanol (Visipaque, GE Healthcare, United Kingdom) in concentration of iodine 320 mg/ml with osmolality 290 mOsm/kg of water during the endovascular procedure. The second control group was followed without contrast medium administered. Residual diuresis and residual renal excretory capacity expressed as 24-h calculated creatinine clearance were evaluated in the both groups after 6 months. The evaluated group included 42 patients who were given 99.3 ml of iodixanol in average (range, 60-180 ml). The control group included 45 patients. There was no statistically significant difference found between both groups in daily volume of urine (P = 0.855) and calculated clearance of creatinine (P = 0.573). We can conclude that residual diuresis is not significantly influenced by intravascular administration of iso-osmolal iodinated contrast agent (iodixanol) in range of volume from 60 to 180 ml in comparison to natural course of urinary output and residual renal function during end-stage renal disease. This result can help the nephrologist to decide which imaging method/contrast medium to use in dialyzed patients in current practice.

  3. Query and Visualization of extremely large network datasets over the web using Quadtree based KML Regional Network Links

    SciTech Connect (OSTI)

    Dadi, Upendra; Liu, Cheng; Vatsavai, Raju

    2009-01-01

    Geographic data sets are often very large in size. Interactive visualization of such data at all scales is not easy because of the limited resolution of the monitors and inability of visualization applications to handle the volume of data. This is especially true for large vector datasets. The end user s experience is frequently unsatisfactory when exploring such data over the web using a naive application. Network bandwidth is another contributing factor to the low performance. In this paper, a Quadtree based technique to visualize extremely large spatial network datasets over the web is described. It involves using custom developed algorithms leveraging a PostGIS database as the data source and Google Earth as the visualization client. This methodology supports both point and range queries along with non-spatial queries. This methodology is demonstrated using a network dataset consisting of several million links. The methodology is based on using some of the powerful features of KML (Keyhole Markup Language). Keyhole Markup Language (KML) is an Open Geospatial Consortium (OGC) standard for displaying geospatial data on Earth browsers. One of the features of KML is the notion of Network Links. Using network links, a wide range of geospatial data sources such as geodatabases, static files and geospatial data services can be simultaneously accessed and visualized seamlessly. Using the network links combined with Level of Detail principle, view based rendering and intelligent server and client-side caching, scalability in visualizing extremely large spatial datasets can be achieved.

  4. Translation, Enhancement, Filtering, and Visualization of Large 3D Triangle Mesh

    Energy Science and Technology Software Center (OSTI)

    1997-04-21

    The runthru system consists of five programs: workcell filter, just do it, transl8g, decim8, and runthru. The workcell filter program is useful if the source of your 3D triangle mesh model is IGRIP. It will traverse a directory structure of Deneb IGRIP files and filter out any IGRIP part files that are not referenced by an accompanying IGRIP work cell file. The just do it program automates translating and/or filtering of large numbers of partsmore » that are organized in hierarchical directory structures. The transl8g program facilitates the interchange, topology generation, error checking, and enhancement of large 3D triangle meshes. Such data is frequently used to represent conceptual designs, scientific visualization volume modeling, or discrete sample data. Interchange is provided between several popular commercial and defacto standard geometry formats. Error checking is included to identify duplicate and zero area triangles. Model engancement features include common vertex joining, consistent triangle vertex ordering, vertex noemal vector averaging, and triangle strip generation. Many of the traditional O(n2) algorithms required to provide the above features have been recast and are o(nlog(n)) which support large mesh sizes. The decim8 program is based on a data filter algorithm that significantly reduces the number of triangles required to represent 3D models of geometry, scientific visualization results, and discretely sampled data. It eliminates local patches of triangles whose geometries are not appreciably different and replaces them with fewer, larger triangles. The algorithm has been used to reduce triangles in large conceptual design models to facilitate virtual walk throughs and to enable interactive viewing of large 3D iso-surface volume visualizations. The runthru program provides high performance interactive display and manipulation of 3D triangle mesh models.« less

  5. Computer systems and methods for the query and visualization of multidimensional databases

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L.; Hanrahan, Patrick

    2006-08-08

    A method and system for producing graphics. A hierarchical structure of a database is determined. A visual table, comprising a plurality of panes, is constructed by providing a specification that is in a language based on the hierarchical structure of the database. In some cases, this language can include fields that are in the database schema. The database is queried to retrieve a set of tuples in accordance with the specification. A subset of the set of tuples is associated with a pane in the plurality of panes.

  6. Computer systems and methods for the query and visualization of multidimensional database

    DOE Patents [OSTI]

    Stolte, Chris; Tang, Diane L.; Hanrahan, Patrick

    2010-05-11

    A method and system for producing graphics. A hierarchical structure of a database is determined. A visual table, comprising a plurality of panes, is constructed by providing a specification that is in a language based on the hierarchical structure of the database. In some cases, this language can include fields that are in the database schema. The database is queried to retrieve a set of tuples in accordance with the specification. A subset of the set of tuples is associated with a pane in the plurality of panes.

  7. Visual and Electrical Evidence Supporting a Two-Plasma Mechanism of Vacuum Breakdown Initiation

    SciTech Connect (OSTI)

    Castano-Giraldo, C.; Aghazarian, Maro; Caughman, John B; Ruzic, D. N.

    2012-01-01

    The energy available during vacuum breakdown between copper electrodes at high vacuum was limited using resistors in series with the vacuum gap and arresting diodes. Surviving features observed with SEM in postmortem samples were tentatively correlated with electrical signals captured during breakdown using a Rogowski coil and a high-voltage probe. The visual and electrical evidence is consistent with the qualitative model of vacuum breakdown by unipolar arc formation by Schwirzke [1, 2]. The evidence paints a picture of two plasmas of different composition and scale being created during vacuum breakdown: an initial plasma made of degassed material from the metal surface, ignites a plasma made up of the electrode material.

  8. Manifold compositions, music visualization, and scientific sonification in an immersive virtual-reality environment.

    SciTech Connect (OSTI)

    Kaper, H. G.

    1998-01-05

    An interdisciplinary project encompassing sound synthesis, music composition, sonification, and visualization of music is facilitated by the high-performance computing capabilities and the virtual-reality environments available at Argonne National Laboratory. The paper describes the main features of the project's centerpiece, DIASS (Digital Instrument for Additive Sound Synthesis); ''A.N.L.-folds'', an equivalence class of compositions produced with DIASS; and application of DIASS in two experiments in the sonification of complex scientific data. Some of the larger issues connected with this project, such as the changing ways in which both scientists and composers perform their tasks, are briefly discussed.

  9. iGlobe: An Interactive Visualization and Analysis Framework for Geospatial Data

    SciTech Connect (OSTI)

    2011-07-22

    The iGlobe system is a desktop-based visualization and analysis environment which allows seamless integration of multiple geospatial data sets from varied sources and provides an interface to interactively analyze the different data sets and apply sophisticated data analysis and mining algorithms in a near real time fashion. The framework is highly desirable in domains such as earth and climate sciences where great emphasis is placed on simultaneous analysis of different data sets such as remote sensing images, climate model simulation outputs, and other environmental and demographic databases, to understand weather and climate systems and the impact of climate change in nature and people.

  10. Visualization of Shock Wave Driven by Millimeter Wave Plasma in a Parabolic Thruster

    SciTech Connect (OSTI)

    Yamaguchi, Toshikazu; Shimada, Yutaka; Shiraishi, Yuya; Shibata, Teppei; Komurasaki, Kimiya; Oda, Yasuhisa; Kajiwara, Ken; Takahashi, Koji; Kasugai, Atsushi; Sakamoto, Keishi; Arakawa, Yoshihiro

    2010-05-06

    By focusing a high-power millimeter wave beam generated by a 170 GHz gyrotron, a breakdown occurred and a shock wave was driven by plasma heated by following microwave energy. The shock wave and the plasma around a focal point of a parabolic thruster were visualized by a shadowgraph method, and a transition of structures between the shock wave and the plasma was observed. There was a threshold local power density to make the transition, and the propagation velocity at the transition was around 800 m/s.

  11. Integrating Heterogeneous Healthcare Datasets and Visual Analytics for Disease Bio-surveillance and Dynamics

    SciTech Connect (OSTI)

    Ramanathan, Arvind; Pullum, Laura L; Steed, Chad A; Quinn, Shannon; Chennubhotla, Chakra; Parker, Tara L

    2013-01-01

    n this paper, we present an overview of the big data chal- lenges in disease bio-surveillance and then discuss the use of visual analytics for integrating data and turning it into knowl- edge. We will explore two integration scenarios: (1) combining text and multimedia sources to improve situational awareness and (2) enhancing disease spread model data with real-time bio-surveillance data. Together, the proposed integration methodologies can improve awareness about when, where and how emerging diseases can affect wide geographic regions.

  12. Development of a Visual Inspection Checklist for Evaluation of Fielded PV Module Condition (Presentation)

    SciTech Connect (OSTI)

    Packard, C. E; Wohlgemuth, J. H.; Kurtz, S. R.

    2012-03-01

    A visual inspection checklist for the evaluation of fielded photovoltaic (PV) modules has been developed to facilitate collection of data describing the field performance of PV modules. The proposed inspection checklist consists of 14 sections, each documenting the appearance or properties of a part of the module. This tool has been evaluated through the inspection of over 60 PV modules produced by more than 20 manufacturers and fielded at two different sites for varying periods of time. Aggregated data from a single data collection tool such as this checklist has the potential to enable longitudinal studies of module condition over time, technology evolution, and field location for the enhancement of module reliability models.

  13. Mantid - Data Analysis and Visualization Package for Neutron Scattering and $\\mu SR$ Experiments

    SciTech Connect (OSTI)

    Arnold, Owen; Bilheux, Jean-Christophe; Borreguero Calvo, Jose M; Buts, Alex; Campbell, Stuart I; Doucet, Mathieu; Draper, Nicholas J; Ferraz Leal, Ricardo F; Gigg, Martyn; Lynch, Vickie E; Mikkelson, Dennis J; Mikkelson, Ruth L; Miller, Ross G; Perring, Toby G; Peterson, Peter F; Ren, Shelly; Reuter, Michael A; Savici, Andrei T; Taylor, Jonathan W; Taylor, Russell J; Zhou, Wenduo; Zikovsky, Janik L

    2014-11-01

    The Mantid framework is a software solution developed for the analysis and visualization of neutron scattering and muon spin measurements. The framework is jointly developed by a large team of software engineers and scientists at the ISIS Neutron and Muon Facility and the Oak Ridge National Laboratory. The objective of the development is to improve software quality, both in terms of performance and ease of use, for the the user community of large scale facilities. The functionality and novel design aspects of the framework are described.

  14. Electron elastic differential cross sections for free atoms using a scientific visualization package

    SciTech Connect (OSTI)

    Flox, L.; Ughrin, J.; Ozturk, N.

    1992-12-01

    Differential cross sections (DCS) of electron elastic scattering by free indium and antimony atoms are presented. The DCS were calculated using the method of partial waves and the optical model. The optical potential consists of static, polarization and exchange terms. Comparisons of experimental data for argon and mercury are used to establish the credibility of the model. The elastic data for indium and antimony covers the range from a few hundred eV`s to a few KeV. The data are presented in a Spyglass{reg_sign} scientific visualization package format.

  15. Visualization of Fiber Structurein the Left and Right Ventricleof a Human Heart

    SciTech Connect (OSTI)

    Rohmer, Damien; Sitek, Arkadiusz; Gullberg, Grant T.

    2006-07-12

    The human heart is composed of a helical network of musclefibers. Anisotropic least squares filtering followed by fiber trackingtechniques were applied to Diffusion Tensor Magnetic Resonance Imaging(DTMRI) data of the excised human heart. The fiber configuration wasvisualized by using thin tubes to increase 3-dimensional visualperception of the complex structure. All visualizations were performedusing the high-quality ray-tracing software POV-Ray. The fibers are shownwithin the left and right ventricles. Both ventricles exhibit similarfiber architecture and some bundles of fibers are shown linking right andleft ventricles on the posterior region of the heart.

  16. North American SynchroPhasor Initiative (NASPI) Technical Report- Phasor Tools Visualization

    Broader source: Energy.gov [DOE]

    This technical report was developed by the North American SynchroPhasor Initiative, a collaboration between the North American electric industry (utilities, grid operators, vendors and consultants), the North American Electric Reliability Corporation, academics, and the U.S. Department of Energy, to advance and accelerate the development and use of synchrophasor technology for grid reliability and efficiency. The material was produced for a visualization workshop, one of a series of NASPI technical workshops intended to educate and document the stakeholder community on the state of the art for key synchrophasor technology issues.

  17. Adding a Visualization Feature to Web Search Engines: Its Time

    SciTech Connect (OSTI)

    Wong, Pak C.

    2008-11-11

    Since the first world wide web (WWW) search engine quietly entered our lives in 1994, the information need behind web searching has rapidly grown into a multi-billion dollar business that dominates the internet landscape, drives e-commerce traffic, propels global economy, and affects the lives of the whole human race. Todays search engines are faster, smarter, and more powerful than those released just a few years ago. With the vast investment pouring into research and development by leading web technology providers and the intense emotion behind corporate slogans such as win the web or take back the web, I cant help but ask why are we still using the very same text-only interface that was used 13 years ago to browse our search engine results pages (SERPs)? Why has the SERP interface technology lagged so far behind in the web evolution when the corresponding search technology has advanced so rapidly? In this article I explore some current SERP interface issues, suggest a simple but practical visual-based interface design approach, and argue why a visual approach can be a strong candidate for tomorrows SERP interface.

  18. Visualization and quantification of evolving datasets. Final report: 8-1-93 - 4-30-97

    SciTech Connect (OSTI)

    Zabusky, N.; Silver, D.

    1999-07-20

    The material below is the final technical/progress report of the Laboratory for Visiometrics and Modeling (Vizlab) in visiometrics for the grant entitled Visualization and Quantification of Evolving Phenomena. This includes coordination with DOE supported scientists at Los Alamos National Laboratory (LANL) and Princeton Plasma Physics Laboratory (PPPL), and with theoretical and computational physicists at the National Institute of Fusion Science (NIFS) in Nagoya, Japan and the Institute of Laser Engineering (ILE) in Osaka, Japan. The authors research areas included: Enhancement and distribution of the DAVID environment, this is a 2D visualization environment incorporating many advanced quantifications and diagnostics useful for prediction, understanding, and reduced model formation; Feature extraction, tracking and quantification of 3D time-dependent datasets of non-linear and turbulent simulations both compressible and incompressible. This work is applicable to all 3D time-varying simulations; Visiometrics in shock-interface interactions and mixing for the Richtmyer-Meshkov (RM) environment. This work highlights reduced models for nonlinear evolutions and the role of density stratified interfaces (contact discontinuities) and has application to supernova physics, laser fusion and supersonic combustion. The collaborative projects included areas of (1) Feature extraction, tracking and quantification in 3D turbulence: compressible and incompressible; (2) Numerical Tokamak Project (NTP); (3) Data projection and reduced modeling for shock-interface interactions and mixing. (The Richtmyer-Meshkov (RM) environment relevant to laser fusion and combustion).

  19. In-Situ Visualization Experiments with ParaView Cinema in RAGE

    SciTech Connect (OSTI)

    Kares, Robert John

    2015-10-15

    A previous paper described some numerical experiments performed using the ParaView/Catalyst in-situ visualization infrastructure deployed in the Los Alamos RAGE radiation-hydrodynamics code to produce images from a running large scale 3D ICF simulation. One challenge of the in-situ approach apparent in these experiments was the difficulty of choosing parameters likes isosurface values for the visualizations to be produced from the running simulation without the benefit of prior knowledge of the simulation results and the resultant cost of recomputing in-situ generated images when parameters are chosen suboptimally. A proposed method of addressing this difficulty is to simply render multiple images at runtime with a range of possible parameter values to produce a large database of images and to provide the user with a tool for managing the resulting database of imagery. Recently, ParaView/Catalyst has been extended to include such a capability via the so-called Cinema framework. Here I describe some initial experiments with the first delivery of Cinema and make some recommendations for future extensions of Cinema’s capabilities.

  20. In situ visualization of metallurgical reactions in nanoscale Cu/Sn diffusion couples

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Yin, Qiyue; Stach, Eric A.; Gao, Fan; Zhou, Guangwen; Gu, Zhiyong

    2015-02-10

    The Cu–Sn metallurgical soldering reaction in two-segmented Cu–Sn nanowires is visualized by in-situ transmission electron microscopy. By varying the relative lengths of Cu and Sn segments, we show that the metallurgical reaction starts at ~ 200 ° with the formation of a Cu–Sn solid solution for the Sn/Cu length ratio smaller than 1:5 while the formation of Cu–Sn intermetallic compounds (IMCs) for larger Sn/Cu length ratios. Upon heating the nanowires up to ~ 500 °C, two phase transformation pathways occur, η-Cu₆Sn₅ → ε-Cu₃Sn → δ-Cu₄₁Sn₁₁ for nanowires with a long Cu segment and η-Cu₆Sn₅ → ε-Cu₃Sn → γ-Cu₃Sn with amore » short Cu segment. The dynamic in situ TEM visualization of the evolution of Kirkendall voids demonstrates that Cu diffuses faster both in Sn and IMCs than that of Sn in Cu₃ and IMCs, which is the underlying cause of the dependence of the IMC formation and associated phase evolution on the relative lengths of the Cu and Sn segments.« less

  1. Statistical Projections for Multi-resolution, Multi-dimensional Visual Data Exploration and Analysis

    SciTech Connect (OSTI)

    Hoa T. Nguyen; Stone, Daithi; E. Wes Bethel

    2016-01-01

    An ongoing challenge in visual exploration and analysis of large, multi-dimensional datasets is how to present useful, concise information to a user for some specific visualization tasks. Typical approaches to this problem have proposed either reduced-resolution versions of data, or projections of data, or both. These approaches still have some limitations such as consuming high computation or suffering from errors. In this work, we explore the use of a statistical metric as the basis for both projections and reduced-resolution versions of data, with a particular focus on preserving one key trait in data, namely variation. We use two different case studies to explore this idea, one that uses a synthetic dataset, and another that uses a large ensemble collection produced by an atmospheric modeling code to study long-term changes in global precipitation. The primary findings of our work are that in terms of preserving the variation signal inherent in data, that using a statistical measure more faithfully preserves this key characteristic across both multi-dimensional projections and multi-resolution representations than a methodology based upon averaging.

  2. 2014 Earth System Grid Federation and Ultrascale Visualization Climate Data Analysis Tools Conference Report

    SciTech Connect (OSTI)

    Williams, Dean N.

    2015-01-27

    The climate and weather data science community met December 9–11, 2014, in Livermore, California, for the fourth annual Earth System Grid Federation (ESGF) and Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) Face-to-Face (F2F) Conference, hosted by the Department of Energy, National Aeronautics and Space Administration, National Oceanic and Atmospheric Administration, the European Infrastructure for the European Network of Earth System Modelling, and the Australian Department of Education. Both ESGF and UVCDATremain global collaborations committed to developing a new generation of open-source software infrastructure that provides distributed access and analysis to simulated and observed data from the climate and weather communities. The tools and infrastructure created under these international multi-agency collaborations are critical to understanding extreme weather conditions and long-term climate change. In addition, the F2F conference fosters a stronger climate and weather data science community and facilitates a stronger federated software infrastructure. The 2014 F2F conference detailed the progress of ESGF, UV-CDAT, and other community efforts over the year and sets new priorities and requirements for existing and impending national and international community projects, such as the Coupled Model Intercomparison Project Phase Six. Specifically discussed at the conference were project capabilities and enhancements needs for data distribution, analysis, visualization, hardware and network infrastructure, standards, and resources.

  3. Visualization of metabolic interaction networks in microbial communities using VisANT 5.0

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Granger, Brian R.; Chang, Yi -Chien; Wang, Yan; DeLisi, Charles; Segre, Daniel; Hu, Zhenjun

    2016-04-15

    Here, the complexity of metabolic networks in microbial communities poses an unresolved visualization and interpretation challenge. We address this challenge in the newly expanded version of a software tool for the analysis of biological networks, VisANT 5.0. We focus in particular on facilitating the visual exploration of metabolic interaction between microbes in a community, e.g. as predicted by COMETS (Computation of Microbial Ecosystems in Time and Space), a dynamic stoichiometric modeling framework. Using VisANT's unique meta-graph implementation, we show how one can use VisANT 5.0 to explore different time-dependent ecosystem-level metabolic networks. In particular, we analyze the metabolic interaction networkmore » between two bacteria previously shown to display an obligate cross-feeding interdependency. In addition, we illustrate how a putative minimal gut microbiome community could be represented in our framework, making it possible to highlight interactions across multiple coexisting species. We envisage that the "symbiotic layout" of VisANT can be employed as a general tool for the analysis of metabolism in complex microbial communities as well as heterogeneous human tissues.« less

  4. A texture-based framework for improving CFD data visualization in a virtual environment

    SciTech Connect (OSTI)

    Gerrick O'Ron Bivins

    2005-05-05

    In the field of computational fluid dynamics (CFD) accurate representations of fluid phenomena can be simulated hut require large amounts of data to represent the flow domain. Most datasets generated from a CFD simulation can be coarse, {approx}10,000 nodes or cells, or very fine with node counts on the order of 1,000,000. A typical dataset solution can also contain multiple solutions for each node, pertaining to various properties of the flow at a particular node. Scalar properties such as density, temperature, pressure, and velocity magnitude are properties that are typically calculated and stored in a dataset solution. Solutions are not limited to just scalar properties. Vector quantities, such as velocity, are also often calculated and stored for a CFD simulation. Accessing all of this data efficiently during runtime is a key problem for visualization in an interactive application. Understanding simulation solutions requires a post-processing tool to convert the data into something more meaningful. Ideally, the application would present an interactive visual representation of the numerical data for any dataset that was simulated while maintaining the accuracy of the calculated solution. Most CFD applications currently sacrifice interactivity for accuracy, yielding highly detailed flow descriptions hut limiting interaction for investigating the field.

  5. Visualization for Hyper-Heuristics. Front-End Graphical User Interface

    SciTech Connect (OSTI)

    Kroenung, Lauren

    2015-03-01

    Modern society is faced with ever more complex problems, many of which can be formulated as generate-and-test optimization problems. General-purpose optimization algorithms are not well suited for real-world scenarios where many instances of the same problem class need to be repeatedly and efficiently solved because they are not targeted to a particular scenario. Hyper-heuristics automate the design of algorithms to create a custom algorithm for a particular scenario. While such automated design has great advantages, it can often be difficult to understand exactly how a design was derived and why it should be trusted. This project aims to address these issues of usability by creating an easy-to-use graphical user interface (GUI) for hyper-heuristics to support practitioners, as well as scientific visualization of the produced automated designs. My contributions to this project are exhibited in the user-facing portion of the developed system and the detailed scientific visualizations created from back-end data.

  6. Beam hardening and smoothing correction effects on performance of micro-ct SkyScan 1173 for imaging low contrast density materials

    SciTech Connect (OSTI)

    Sriwayu, Wa Ode; Haryanto, Freddy; Khotimah, Siti Nurul; Latief, Fourier Dzar Eljabbar

    2015-04-16

    We have designed and fabricated phantom mimicking breast cancer composition known as a region that has low contrast density. The used compositions are a microcalcifications, fatty tissues and tumor mass by using Al{sub 2}O{sub 3}, C{sub 27}H{sub 46}O, and hard nylon materials. Besides, phantom also has a part to calculate low cost criteria /CNR (Contrast to Noise Ratio). Uniformity will be measured at water distillation medium located in a part of phantom scale contrast. Phantom will be imaged by using micro ct-sky scan 1173 high energy type, and then also can be quantified CT number to examine SkyScan 1173 performance in imaging low contrast density materials. Evaluation of CT number is done at technique configuration parameter using voltage of 30?kV, exposure 0.160 mAs, and camera resolution 560x560 pixel, the effect of image quality to reconstruction process is evaluated by varying image processing parameters in the form of beam hardening corrections with amount of 25%, 66% and100% with each smoothing level S10,S2 and S7. To obtain the better high quality image, the adjustment of beam hardening correction should be 66% and smoothing level reach maximal value at level 10.

  7. Ramsey Interference in One-Dimensional Systems: The Full Distribution Function of Fringe Contrast as a Probe of Many-Body Dynamics

    SciTech Connect (OSTI)

    Kitagawa, Takuya; Pielawa, Susanne; Demler, Eugene [Physics Department, Harvard University, Cambridge, Massachusetts 02138 (United States); Imambekov, Adilet [Department of Physics and Astronomy, Rice University, Houston, Texas 77005 (United States); Schmiedmayer, Joerg [Atominstitut, TU-Wien, Stadionallee 2, 1020 Vienna (Austria); Gritsev, Vladimir [Physics Department, University of Fribourg, Chemin du Musee 3, 1700 Fribourg (Switzerland)

    2010-06-25

    We theoretically analyze Ramsey interference experiments in one-dimensional quasicondensates and obtain explicit expressions for the time evolution of full distribution functions of fringe contrast. We show that distribution functions contain unique signatures of the many-body mechanism of decoherence. We argue that Ramsey interference experiments provide a powerful tool for analyzing strongly correlated nature of 1D interacting systems.

  8. Public Communication of Technical Issues in Today's Changing Visual Language - 12436

    SciTech Connect (OSTI)

    Hermann, Laura [Potomac Communications Group (United States)

    2012-07-01

    Communication regarding the management of radioactive materials is a well-established challenge. Residents and consumers have suspected for years that companies and governments place short-term economic concerns ahead of health and safety. This skepticism is compounded with increased attention to safety issues at nuclear power plants everywhere after Fukushima. Nonetheless, today's environment presents unexpected opportunities to transform public fear into teachable moments that bring knowledge and facts to discussions on nuclear energy. In the weeks following Japan's crisis, the lack of reliable information on radiation levels saw citizens taking to the streets with dosimeters and Geiger counters in crowd-sourced radiation monitoring efforts. Efforts, based mainly online, represent a growing set of examples of how internet and cell-phone technology are being put to use in emergency situations. The maps, graphs and tables created to meet public interest also exemplify some of the psychological priorities of audiences and present learning tools that can improve future education efforts in non-emergency situations. Industry outreach efforts often consist of technical details and quantitative data that are difficult for lay audiences to interpret. The intense attention to nuclear energy issues since last March has produced a wide array of visual samples. Citizen monitors, news organizations, government agencies and others have displayed quantitative information in innovative ways. Their efforts offer new perspective on what charts, maps and info graphics do - or need to do - to illustrate requirements, record assessments and promote understanding of nuclear-waste issues. Surveying the best examples, nuclear communicators can improve their offerings of easy-to-use, evidence-based visuals to inform stakeholders. Familiar to most communications professionals in the nuclear industry, risk communication is a science-based approach with over three decades of research

  9. The Capabilities and Limitation of Remote Visual Methods to Detect Service-Induced Cracks in Reactor Components

    SciTech Connect (OSTI)

    Cumblidge, Stephen E.; Doctor, Steven R.; Anderson, Michael T.

    2006-11-01

    Since 1977, the U.S. Nuclear Regulatory Commission (NRC) Office of Nuclear Regulatory Research has funded a multiyear program at the Pacific Northwest National Laboratory (PNNL) to evaluate the reliability and accuracy of nondestructive evaluation (NDE) techniques employed for inservice inspection (ISI). Recently, the U.S. nuclear industry proposed replacing current volumetric and/or surface examinations of certain components in commercial nuclear power plants, as required by ASME Boiler and Pressure Vessel Code Section XI, with a simpler visual testing (VT) method. The advantages of VT are that these tests generally involve much less radiation exposure and examination times than do volumetric examinations such as ultrasonic testing (UT). However, for industry to justify supplamenting volumetric metods with VT, and analysis of pertinent issues is needed to support the reliability of VT in determining the structural intefrity of reactor components. As piping and pressure vessel compoents in a nuclear power station are generally underwater and in high radiation field, they need to be examined by VT from a distance with radiation-hardened video systems. Remote visual testing has been used by nuclear utilities to find cracks in pressure vessel cladding in pressurized water reactors, for shrouds in boiling water reactors, and to investigate leaks in piping and reactor components. These visual tests are performed using a wide variety of procedures and equipment. The techniques for remote visual testing use submersible closed-circuit video cameras to examine reactor components and welds. PNNL has conducted a parametric study that examines the important variables that affect the effectiveness of a remote visual test. Tested variables include lighting techniques, camera resolution, camera movement, and magnification. PNNL has also conductrd a laboratory test using a commercial visual testing camera system to experimentally determine the ability of the camera system to

  10. SPOCS: Software for Predicting and Visualizing Orthology/Paralogy Relationships Among Genomes

    SciTech Connect (OSTI)

    Curtis, Darren S.; Phillips, Aaron R.; Callister, Stephen J.; Conlan, Sean; McCue, Lee Ann

    2013-10-15

    At the rate that prokaryotic genomes can now be generated, comparative genomics studies require a flexible method for quickly and accurately predicting orthologs among the rapidly changing set of genomes available. SPOCS implements a graph-based ortholog prediction method to generate a simple tab-delimited table of orthologs and in addition, html files that provide a visualization of the predicted ortholog/paralog relationships to which gene/protein expression metadata may be overlaid. AVAILABILITY AND IMPLEMENTATION: A SPOCS web application is freely available at http://cbb.pnnl.gov/portal/tools/spocs.html. Source code for Linux systems is also freely available under an open source license at http://cbb.pnnl.gov/portal/software/spocs.html; the Boost C++ libraries and BLAST are required.

  11. Functionalized Buckyballs for Visualizing Microbial Species in Different States and Environments

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Cheng, Qingsu; Aravind, Ashwin; Buckley, Matthew; Gifford, Andrew; Parvin, Bahram

    2015-09-08

    To date, in situ visualization of microbial density has remained an open problem. Here, functionalized buckyballs (e.g., C60-pyrrolidine tris acid) are shown to be a versatile platform that allows internalization within a microorganism without either adhering to the cell wall and cell membrane or binding to a matrix substrate such as soil. These molecular probes are validated via multi-scale imaging, to show association with microorganisms via fluorescence microscopy, positive cellular uptake via electron microscopy, and non-specific binding to the substrates through a combination of fluorescence and autoradiography imaging. In conclusion, we also demonstrate that cysteine-functionalized C60- pyrrolidine tris acid canmore » differentiate live and dead microorganisms.« less

  12. Visualization of atomic-scale phenomena in superconductors: application to FeSe

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Choubey, Peayush; Berlijn, Tom; Kreisel, Andreas; Cao, Chao; Hirschfeld, Peter J.

    2014-10-31

    Here we propose a simple method of calculating inhomogeneous, atomic-scale phenomena in superconductors which makes use of the wave function information traditionally discarded in the construction of tight-binding models used in the Bogoliubov-de Gennes equations. The method uses symmetry- based first principles Wannier functions to visualize the effects of superconducting pairing on the distribution of electronic states over atoms within a crystal unit cell. Local symmetries lower than the global lattice symmetry can thus be exhibited as well, rendering theoretical comparisons with scanning tunneling spectroscopy data much more useful. As a simple example, we discuss the geometric dimer states observedmore » near defects in superconducting FeSe.« less

  13. Development of a Visual Inspection Data Collection Tool for Evaluation of Fielded PV Module Condition

    SciTech Connect (OSTI)

    Packard, C. E.; Wohlgemuth, J. H.; Kurtz, S. R.

    2012-08-01

    A visual inspection data collection tool for the evaluation of fielded photovoltaic (PV) modules has been developed to facilitate describing the condition of PV modules with regard to field performance. The proposed data collection tool consists of 14 sections, each documenting the appearance or properties of a part of the module. This report instructs on how to use the collection tool and defines each attribute to ensure reliable and valid data collection. This tool has been evaluated through the inspection of over 60 PV modules produced by more than 20 manufacturers and fielded at two different sites for varying periods of time. Aggregated data from such a single data collection tool has the potential to enable longitudinal studies of module condition over time, technology evolution, and field location for the enhancement of module reliability models.

  14. The impact of instructions on aircraft visual inspection performance : a first look at the overall results.

    SciTech Connect (OSTI)

    Drury, Colin G.; Spencer, Floyd Wayne; Wenner, Caren A.

    2003-07-01

    The purpose of this study was to investigate the impact of instructions on aircraft visual inspection performance and strategy. Forty-two inspectors from industry were asked to perform inspections of six areas of a Boeing 737. Six different instruction versions were developed for each inspection task, varying in the number and type of directed inspections. The amount of time spent inspecting, the number of calls made, and the number of the feedback calls detected all varied widely across the inspectors. However, inspectors who used instructions with a higher number of directed inspections referred to the instructions more often during and after the task, and found a higher percentage of a selected set of feedback cracks than inspectors using other instruction versions. This suggests that specific instructions can help overall inspection performance, not just performance on the defects specified. Further, instructions were shown to change the way an inspector approaches a task.

  15. Supporting Mutual Understanding in a Visual Dialogue Between Analyst and Computer

    SciTech Connect (OSTI)

    Chappell, Alan R.; Cowell, Andrew J.; Thurman, David A.; Thomson, Judi R.

    2004-09-20

    The Knowledge Associates for Novel Intelligence (KANI) project is developing a system of automated associates to actively support and participate in the information analysis task. The primary goal of KANI is to use automatically extracted information in a reasoning system that draws on the strengths of both a human analyst and automated reasoning. The interface between the two agents is a key element in achieving this goal. The KANI interface seeks to support a visual dialogue with mixed-initiative manipulation of information and reasoning components. To be successful, the interface must achieve mutual understanding between the analyst and KANI of the others actions. Toward this mutual understanding, KANI allows the analyst to work at multiple levels of abstraction over the reasoning process, links the information presented across these levels to make use of interaction context, and provides querying facilities to allow exploration and explanation.

  16. Functionalized Buckyballs for Visualizing Microbial Species in Different States and Environments

    SciTech Connect (OSTI)

    Cheng, Qingsu; Aravind, Ashwin; Buckley, Matthew; Gifford, Andrew; Parvin, Bahram

    2015-09-08

    To date, in situ visualization of microbial density has remained an open problem. Here, functionalized buckyballs (e.g., C60-pyrrolidine tris acid) are shown to be a versatile platform that allows internalization within a microorganism without either adhering to the cell wall and cell membrane or binding to a matrix substrate such as soil. These molecular probes are validated via multi-scale imaging, to show association with microorganisms via fluorescence microscopy, positive cellular uptake via electron microscopy, and non-specific binding to the substrates through a combination of fluorescence and autoradiography imaging. In conclusion, we also demonstrate that cysteine-functionalized C60- pyrrolidine tris acid can differentiate live and dead microorganisms.

  17. Communication and Energy Efficiency in Visual Sensor Networks for People Localization

    SciTech Connect (OSTI)

    Karakaya, Mahmut; Qi, Hairong

    2012-01-01

    This paper addresses the communication and energy efficiency in collaborative visual sensor networks (VSNs) for people localization, a challenging computer vision problem of its own. We focus on the design of a light-weight and energy efficient solution where people are localized based on distributed camera nodes integrating the so-called certainty map generated at each node, that records the target non-existence information within the camera s field of view. We first present a dynamic itinerary for certainty map integration where not only each sensor node transmits a very limited amount of data but that a limited number of camera nodes is involved. Then, we perform a comprehensive analytical study to evaluate communication and energy efficiency between different integration schemes, i.e., centralized and distributed integration. Based on results obtained from analytical study and real experiments, the distributed method shows effectiveness in detection accuracy as well as energy and bandwidth efficiency.

  18. Direct visualization of the hydration layer on alumina nanoparticles with the fluid cell STEM in situ

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Firlar, Emre; ?nar, Simge; Kashyap, Sanjay; Akinc, Mufit; Prozorov, Tanya

    2015-05-21

    Rheological behavior of aqueous suspensions containing nanometer-sized powders is of relevance to many branches of industry. Unusually high viscosities observed for suspensions of nanoparticles compared to those of micron size powders cannot be explained by current viscosity models. Formation of so-called hydration layer on alumina nanoparticles in water was hypothesized, but never observed experimentally. We report here on the direct visualization of aqueous suspensions of alumina with the fluid cell in situ. We observe the hydration layer formed over the particle aggregates and show that such hydrated aggregates constitute new particle assemblies and affect the flow behavior of the suspensions.moreWe discuss how these hydrated nanoclusters alter the effective solid content and the viscosity of nanostructured suspensions. Our findings elucidate the source of high viscosity observed for nanoparticle suspensions and are of direct relevance to many industrial sectors including materials, food, cosmetics, pharmaceutical among others employing colloidal slurries with nanometer-scale particles.less

  19. Future Directions in Computer Graphics and Visualization: From CG&A's Editorial Board

    SciTech Connect (OSTI)

    Encarnacao, L. M.; Chuang, Yung-Yu; Stork, Andre; Kasik, David; Rhyne, Theresa-Marie; Avila, Lisa; Kohlhammer, Jorn; LaViola, Joseph; Tory, Melanie; Dill, John; Domik, Gitta; Owen, G. Scott; Wong, Pak C.

    2015-01-01

    With many new members joining the CG&A editorial board over the past year, and with a renewed commitment to not only document the state of the art in computer graphics research and applications but to anticipate and where possible foster future areas of scientific discourse and industrial practice, we asked editorial and advisory council members about where they see their fields of expertise going. The answers compiled here arent meant to be all encompassing or deterministic when it comes to the opportunities computer graphics and interactive visualization hold for the future. Instead, we aim to accomplish two things: give a more in-depth introduction of members of the editorial board to the CG&A readership and encourage cross-disciplinary discourse toward approaching, complementing, or disputing the visions laid out in this compilation.

  20. Cooperative Singlet and Triplet Exciton Transport in Tetracene Crystals Visualized by Ultrafast Microscopys

    SciTech Connect (OSTI)

    Wan, Yan; Guo, Zhi; Zhu, Tong; Yan, Suxia; Johnson, Justin; Huang, Libai

    2015-09-14

    Singlet fission presents an attractive solution to overcome the Shockley–Queisser limit by generating two triplet excitons from one singlet exciton. Although triplet excitons are long-lived, their transport occurs through a Dexter transfer, making them slower than singlet excitons, which travel by means of a Förster mechanism. A thorough understanding of the interplay between singlet fission and exciton transport is therefore necessary to assess the potential and challenges of singlet-fission utilization. We report a direct visualization of exciton transport in single tetracene crystals using transient absorption microscopy with 200 fs time resolution and 50 nm spatial precision. Moreover, these measurements reveal a new singlet-mediated transport mechanism for triplets, which leads to an enhancement in effective triplet exciton diffusion of more than one order of magnitude on picosecond to nanosecond timescales. These results establish that there are optimal energetics of singlet and triplet excitons that benefit both singlet fission and exciton diffusion.