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Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


1

Nucleic Acid Database: a Repository of Three-Dimensional Information about Nucleic Acids  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The Nucleic Acid Database (NDB) provides 3-D structural information about nucleic acids.  It is a relational database designed to facilitate the easy search for nucleic acid structures using any of the stored primary or derived structural features. Reports can then be created describing any properties of the selected structures and structures may be viewed in several different formats, including the mmCIF format, the NDB Atlas format, the NDB coordinate format, or the PDB coordinate format. Browsing structure images created directly from coordinates in the repository can also be done. More than 7000 structures have been released as of May 2014. This website also includes a number of specialized tools and interfaces. The NDB Project is funded by the National Institutes of Health and has been funded by the National Science Foundation and the Department of Energy in the past.

Berman, H.M.; Olson, W.K.; Beveridge, D.L.; Westbrook, J.; Gelbin, A.; Demeny, T.; Hsieh, S.H.; Srinivasan, A.R.; Schneider, B.

2

Cleavage of nucleic acids  

DOE Patents [OSTI]

The present invention relates to means for the detection and characterization of nucleic acid sequences, as well as variations in nucleic acid sequences. The present invention also relates to methods for forming a nucleic acid cleavage structure on a target sequence and cleaving the nucleic acid cleavage structure in a site-specific manner. The structure-specific nuclease activity of a variety of enzymes is used to cleave the target-dependent cleavage structure, thereby indicating the presence of specific nucleic acid sequences or specific variations thereof.

Prudent, James R. (Madison, WI); Hall, Jeff G. (Waunakee, WI); Lyamichev, Victor I. (Madison, WI); Brow; Mary Ann D. (Madison, WI); Dahlberg, James E. (Madison, WI)

2010-11-09T23:59:59.000Z

3

Cleavage of nucleic acids  

DOE Patents [OSTI]

The present invention relates to means for the detection and characterization of nucleic acid sequences, as well as variations in nucleic acid sequences. The present invention also relates to methods for forming a nucleic acid cleavage structure on a target sequence and cleaving the nucleic acid cleavage structure in a site-specific manner. The structure-specific nuclease activity of a variety of enzymes is used to cleave the target-dependent cleavage structure, thereby indicating the presence of specific nucleic acid sequences or specific variations thereof.

Prudent, James R. (Madison, WI); Hall, Jeff G. (Madison, WI); Lyamichev, Victor L. (Madison, WI); Brow, Mary Ann D. (Madison, WI); Dahlberg, James E. (Madison, WI)

2007-12-11T23:59:59.000Z

4

Nucleic acid detection compositions  

DOE Patents [OSTI]

The present invention relates to means for the detection and characterization of nucleic acid sequences, as well as variations in nucleic acid sequences. The present invention also relates to methods for forming a nucleic acid cleavage structure on a target sequence and cleaving the nucleic acid cleavage structure in a site-specific manner. The structure-specific nuclease activity of a variety of enzymes is used to cleave the target-dependent cleavage structure, thereby indicating the presence of specific nucleic acid sequences or specific variations thereof.

Prudent, James R. (Madison, WI); Hall, Jeff G. (Madison, WI); Lyamichev, Victor I. (Madison, WI); Brow, Mary Ann (Madison, WI); Dahlberg, James L. (Madison, WI)

2008-08-05T23:59:59.000Z

5

Self-assembling multimeric nucleic acid constructs  

DOE Patents [OSTI]

The invention is directed to constructs and compositions containing multimeric forms of nucleic acid. Multimeric nucleic acids comprise single-stranded nucleic acids attached via biotin to streptavidin and bound with a functional group. These constructs can be utilized in vivo to treat or identify diseased tissue or cells. Repeated administrations of multimeric nucleic acid compositions produce a rapid and specific amplification of nucleic acid constructs and their attached functional groups. For treatment purposes, functional groups may be toxins, radioisotopes, genes or enzymes. Diagnostically, labeled multimeric constructs may be used to identify specific targets in vivo or in vitro. Multimeric nucleic acids may also be used in nanotechnology and to create self-assembling polymeric aggregates such as membranes of defined porosity, microcircuits and many other products. 5 figs.

Cantor, C.R.; Niemeyer, C.M.; Smith, C.L.; Sano, Takeshi; Hnatowich, D.J.; Rusckowski, M.

1996-10-01T23:59:59.000Z

6

Self-assembling multimeric nucleic acid constructs  

DOE Patents [OSTI]

The invention is directed to constructs and compositions containing multimeric forms of nucleic acid. Multimeric nucleic acids comprise single-stranded nucleic acids attached via biotin to streptavidin and bound with a functional group. These constructs can be utilized in vivo to treat or identify diseased tissue or cells. Repeated administrations of multimeric nucleic acid compositions produce a rapid and specific amplification of nucleic acid constructs and their attached functional groups. For treatment purposes, functional groups may be toxins, radioisotopes, genes or enzymes. Diagnostically, labeled multimeric constructs may be used to identify specific targets in vivo or in vitro. Multimeric nucleic acids may also be used in nanotechnology and to create self-assembling polymeric aggregates such as membranes of defined porosity, microcircuits and many other products.

Cantor, Charles R. (Boston, MA); Niemeyer, Christof M. (Bremen, DE); Smith, Cassandra L. (Boston, MA); Sano, Takeshi (Boston, MA); Hnatowich, Donald J. (Brookline, MA); Rusckowski, Mary (Southborough, MA)

1999-10-12T23:59:59.000Z

7

Self-assembling multimeric nucleic acid constructs  

DOE Patents [OSTI]

The invention is directed to constructs and compositions containing multimeric forms of nucleic acid. Multimeric nucleic acids comprise single-stranded nucleic acids attached via biotin to streptavidin and bound with a functional group. These constructs can be utilized in vivo to treat or identify diseased tissue or cells. Repeated administrations of multimeric nucleic acid compositions produce a rapid and specific amplification of nucleic acid constructs and their attached functional groups. For treatment purposes, functional groups may be toxins, radioisotopes, genes or enzymes. Diagnostically, labeled multimeric constructs may be used to identify specific targets in vivo or in vitro. Multimeric nucleic acids may also be used in nanotechnology and to create self-assembling polymeric aggregates such as membranes of defined porosity, microcircuits and many other products.

Cantor, Charles R. (Boston, MA); Niemeyer, Christof M. (Bremen, DE); Smith, Cassandra L. (Boston, MA); Sano, Takeshi (Boston, MA); Hnatowich, Donald J. (Brookline, MA); Rusckowski, Mary (Southborough, MA)

1996-01-01T23:59:59.000Z

8

Double stranded nucleic acid biochips  

DOE Patents [OSTI]

This invention describes a new method of constructing double-stranded DNA (dsDNA) microarrays based on the use of pre-synthesized or natural DNA duplexes without a stem-loop structure. The complementary oligonucleotide chains are bonded together by a novel connector that includes a linker for immobilization on a matrix. A non-enzymatic method for synthesizing double-stranded nucleic acids with this novel connector enables the construction of inexpensive and robust dsDNA/dsRNA microarrays. DNA-DNA and DNA-protein interactions are investigated using the microarrays.

Chernov, Boris; Golova, Julia

2006-05-23T23:59:59.000Z

9

Methods for analyzing nucleic acid sequences  

SciTech Connect (OSTI)

The present invention is directed to a method of sequencing a target nucleic acid. The method provides a complex comprising a polymerase enzyme, a target nucleic acid molecule, and a primer, wherein the complex is immobilized on a support Fluorescent label is attached to a terminal phosphate group of the nucleotide or nucleotide analog. The growing nucleic acid strand is extended by using the polymerase to add a nucleotide analog to the nucleic acid strand. The nucleotide analog added to the oligonucleotide primer as a result of the polymerizing step is identified. The time duration of the signal from labeled nucleotides or nucleotide analogs that become incorporated is distinguished from freely diffusing labels by a longer retention in the observation volume for the nucleotides or nucleotide analogs that become incorporated than for the freely diffusing labels.

Korlach, Jonas (Ithaca, NY); Webb, Watt W. (Ithaca, NY); Levene, Michael (Ithaca, NY); Turner, Stephen (Ithaca, NY); Craighead, Harold G. (Ithaca, NY); Foquet, Mathieu (Ithaca, NY)

2011-05-17T23:59:59.000Z

10

Amplification of trace amounts of nucleic acids  

DOE Patents [OSTI]

Methods of reducing background during amplification of small amounts of nucleic acids employ careful analysis of sources of low level contamination. Ultraviolet light can be used to reduce nucleic acid contaminants in reagents and equipment. "Primer-dimer" background can be reduced by judicious design of primers. We have shown clean signal-to-noise with as little as starting material as one single human cell (.about.6 picogram), E. coli cell (.about.5 femtogram) or Prochlorococcus cell (.about.3 femtogram).

Church, George M. (Brookline, MA); Zhang, Kun (Brighton, MA)

2008-06-17T23:59:59.000Z

11

Nucleic acid based fluorescent sensor for copper detection  

DOE Patents [OSTI]

A nucleic acid enzyme responsive to copper, comprising an oligonucleotide comprising a nucleotide sequence of SEQ ID NO:1, wherein the nucleic acid enzyme is not self-cleaving.

Lu, Yi; Liu, Juewen

2013-04-02T23:59:59.000Z

12

Method for nucleic acid isolation using supercritical fluids  

DOE Patents [OSTI]

A method for detecting the presence of a microorganism in an environmental sample involves contacting the sample with a supercritical fluid to isolate nucleic acid from the microorganism, then detecting the presence of a particular sequence within the isolated nucleic acid. The nucleic acid may optionally be subjected to further purification.

Nivens, David E. (11912 Kingsgate Rd., Knoxville, TN 37911); Applegate, Bruce M. (3700 Sutherland Ave. #Q2, Knoxville, TN 37911)

1999-01-01T23:59:59.000Z

13

Nucleic acid analysis using terminal-phosphate-labeled nucleotides  

DOE Patents [OSTI]

The present invention is directed to a method of sequencing a target nucleic acid molecule having a plurality of bases. In its principle, the temporal order of base additions during the polymerization reaction is measured on a molecule of nucleic acid, i.e. the activity of a nucleic acid polymerizing enzyme on the template nucleic acid molecule to be sequenced is followed in real time. The sequence is deduced by identifying which base is being incorporated into the growing complementary strand of the target nucleic acid by the catalytic activity of the nucleic acid polymerizing enzyme at each step in the sequence of base additions. A polymerase on the target nucleic acid molecule complex is provided in a position suitable to move along the target nucleic acid molecule and extend the oligonucleotide primer at an active site. A plurality of labelled types of nucleotide analogs are provided proximate to the active site, with each distinguishable type of nucleotide analog being complementary to a different nucleotide in the target nucleic acid sequence. The growing nucleic acid strand is extended by using the polymerase to add a nucleotide analog to the nucleic acid strand at the active site, where the nucleotide analog being added is complementary to the nucleotide of the target nucleic acid at the active site. The nucleotide analog added to the oligonucleotide primer as a result of the polymerizing step is identified. The steps of providing labelled nucleotide analogs, polymerizing the growing nucleic acid strand, and identifying the added nucleotide analog are repeated so that the nucleic acid strand is further extended and the sequence of the target nucleic acid is determined.

Korlach, Jonas (Ithaca, NY); Webb, Watt W. (Ithaca, NY); Levene, Michael (Ithaca, NY); Turner, Stephen (Ithaca, NY); Craighead, Harold G. (Ithaca, NY); Foquet, Mathieu (Ithaca, NY)

2008-04-22T23:59:59.000Z

14

Detection of nucleic acids by multiple sequential invasive cleavages  

DOE Patents [OSTI]

The present invention relates to means for the detection and characterization of nucleic acid sequences, as well as variations in nucleic acid sequences. The present invention also relates to methods for forming a nucleic acid cleavage structure on a target sequence and cleaving the nucleic acid cleavage structure in a site-specific manner. The structure-specific nuclease activity of a variety of enzymes is used to cleave the target-dependent cleavage structure, thereby indicating the presence of specific nucleic acid sequences or specific variations thereof. The present invention further relates to methods and devices for the separation of nucleic acid molecules based on charge. The present invention also provides methods for the detection of non-target cleavage products via the formation of a complete and activated protein binding region. The invention further provides sensitive and specific methods for the detection of human cytomegalovirus nucleic acid in a sample.

Hall, Jeff G; Lyamichev, Victor I; Mast, Andrea L; Brow, Mary Ann D

2012-10-16T23:59:59.000Z

15

Method for analyzing nucleic acids by means of a substrate having a microchannel structure containing immobilized nucleic acid probes  

DOE Patents [OSTI]

A method and apparatus for analyzing nucleic acids includes immobilizing nucleic probes at specific sites within a microchannel structure and moving target nucleic acids into proximity to the probes in order to allow hybridization and fluorescence detection of specific target sequences.

Ramsey, J. Michael (Knoxville, TN); Foote, Robert S. (Oak Ridge, TN)

2002-01-01T23:59:59.000Z

16

Nucleic acids, compositions and uses thereof  

DOE Patents [OSTI]

The subject invention provides at least one nucleic acid sequence encoding an aldouronate-utilization regulon isolated from Paenibacillus sp. strain JDR-2, a bacterium which efficiently utilizes xylan and metabolizes aldouronates (methylglucuronoxylosaccharides). The subject invention also provides a means for providing a coordinately regulated process in which xylan depolymerization and product assimilation are coupled in Paenibacillus sp. strain JDR-2 to provide a favorable system for the conversion of lignocellulosic biomass to biobased products. Additionally, the nucleic acid sequences encoding the aldouronate-utilization regulon can be used to transform other bacteria to form organisms capable of producing a desired product (e.g., ethanol, 1-butanol, acetoin, 2,3-butanediol, 1,3-propanediol, succinate, lactate, acetate, malate or alanine) from lignocellulosic biomass.

Preston, III, James F. (Micanopy, FL); Chow, Virginia (Gainesville, FL); Nong, Guang (Gainesville, FL); Rice, John D. (Gainesville, FL); St. John, Franz J. (Baltimore, MD)

2012-02-21T23:59:59.000Z

17

Nucleic acid compositions and the encoding proteins  

SciTech Connect (OSTI)

The subject invention provides at least one nucleic acid sequence encoding an aldouronate-utilization regulon isolated from Paenibacillus sp. strain JDR-2, a bacterium which efficiently utilizes xylan and metabolizes aldouronates (methylglucuronoxylosaccharides). The subject invention also provides a means for providing a coordinately regulated process in which xylan depolymerization and product assimilation are coupled in Paenibacillus sp. strain JDR-2 to provide a favorable system for the conversion of lignocellulosic biomass to biobased products. Additionally, the nucleic acid sequences encoding the aldouronate-utilization regulon can be used to transform other bacteria to form organisms capable of producing a desired product (e.g., ethanol, 1-butanol, acetoin, 2,3-butanediol, 1,3-propanediol, succinate, lactate, acetate, malate or alanine) from lignocellulosic biomass.

Preston, III, James F.; Chow, Virginia; Nong, Guang; Rice, John D.; St. John, Franz J.

2014-09-02T23:59:59.000Z

18

EGVII endoglucanase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel endoglucanase nucleic acid sequence, designated egl7, and the corresponding EGVII amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding EGVII, recombinant EGVII proteins and methods for producing the same.

Dunn-Coleman, Nigel; Goedegebuur, Frits; Ward, Michael; Yao, Jian

2014-02-25T23:59:59.000Z

19

EGVII endoglucanase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel endoglucanase nucleic acid sequence, designated egl7, and the corresponding EGVII amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding EGVII, recombinant EGVII proteins and methods for producing the same.

Dunn-Coleman, Nigel (Los Gatos, CA); Goedegebuur, Frits (Vlaardingen, NL); Ward, Michael (San Francisco, CA); Yao, Jian (Sunnyvale, CA)

2008-11-11T23:59:59.000Z

20

Nucleic acid amplification using modular branched primers  

DOE Patents [OSTI]

Methods and compositions expand the options for making primers for use in amplifying nucleic acid segments. The invention eliminates the step of custom synthesis of primers for Polymerase Chain Reactions (PCR). Instead of being custom-synthesized, a primer is replaced by a combination of several oligonucleotide modules selected from a pre-synthesized library. A modular combination of just a few oligonucleotides essentially mimics the performance of a conventional, custom-made primer by matching the sequence of the priming site in the template. Each oligonucleotide module has a segment that matches one of the stretches within the priming site.

Ulanovsky, Levy (Westmont, IL)

2001-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


21

Nucleic acid based fluorescent sensor for mercury detection  

DOE Patents [OSTI]

A nucleic acid enzyme comprises an oligonucleotide containing thymine bases. The nucleic acid enzyme is dependent on both Hg.sup.2+and a second ion as cofactors, to produce a product from a substrate. The substrate comprises a ribonucleotide, a deoxyribonucleotide, or both.

Lu, Yi; Liu, Juewen

2013-02-05T23:59:59.000Z

22

E-Print Network 3.0 - archetypical nucleic acid Sample Search...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

archetypical nucleic acid Search Powered by Explorit Topic List Advanced Search Sample search results for: archetypical nucleic acid Page: << < 1 2 3 4 5 > >> 1 Multiple Sequence...

23

E-Print Network 3.0 - a-form nucleic acid Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Sample search results for: a-form nucleic acid Page: << < 1 2 3 4 5 > >> 1 The Right Chemistry: an Updated Nucleic Acids Textbook Summary: The Right Chemistry: an Updated Nucleic...

24

Oligonucleoside alkyl or arylphosphonate derivatives capable of crosslinking with or cleaving nucleic acids  

DOE Patents [OSTI]

A composition for inactivating a target nucleic acid which comprises an oligonucleoside alkyl or arylphosphonate analogue which is complementary to the sequence of the target nucleic acid is provided. It includes a functional group which reacts with the target nucleic acid to render the target nucleic acid inactive or nonfunctional. 16 figs.

Miller, P.S.; Ts'o, P.O.P.

1999-06-15T23:59:59.000Z

25

Oligonucleoside alkyl or arylphosphonate derivatives capable of crosslinking with or cleaving nucleic acids  

DOE Patents [OSTI]

A composition for inactivating a target nucleic acid which comprises an oligonucleoside alkyl or arylphosphonate analogue which is complementary to the sequence of the target nucleic acid and includes a functional group which reacts with the target nucleic acid to render the target nucleic acid inactive or nonfunctional.

Miller, Paul S. (Baltimore, MD); Ts'o, Paul O.P. (Lutherville, MD)

1999-06-15T23:59:59.000Z

26

Isolated menthone reductase and nucleic acid molecules encoding same  

DOE Patents [OSTI]

The present invention provides isolated menthone reductase proteins, isolated nucleic acid molecules encoding menthone reductase proteins, methods for expressing and isolating menthone reductase proteins, and transgenic plants expressing elevated levels of menthone reductase protein.

Croteau, Rodney B; Davis, Edward M; Ringer, Kerry L

2013-04-23T23:59:59.000Z

27

Thermoplastic Microfluidic Device for On-Chip Purification of Nucleic Acids for Disposable  

E-Print Network [OSTI]

Thermoplastic Microfluidic Device for On-Chip Purification of Nucleic Acids for Disposable, Brookline, Massachusetts 02446 A polymeric microfluidic device for solid-phase extraction (SPE applications. Microfluidic approaches to nucleic acid isolation have therefore received great attention

28

Polymerase chain reaction system using magnetic beads for analyzing a sample that includes nucleic acid  

DOE Patents [OSTI]

A polymerase chain reaction system for analyzing a sample containing nucleic acid includes providing magnetic beads; providing a flow channel having a polymerase chain reaction chamber, a pre polymerase chain reaction magnet position adjacent the polymerase chain reaction chamber, and a post pre polymerase magnet position adjacent the polymerase chain reaction chamber. The nucleic acid is bound to the magnetic beads. The magnetic beads with the nucleic acid flow to the pre polymerase chain reaction magnet position in the flow channel. The magnetic beads and the nucleic acid are washed with ethanol. The nucleic acid in the polymerase chain reaction chamber is amplified. The magnetic beads and the nucleic acid are separated into a waste stream containing the magnetic beads and a post polymerase chain reaction mix containing the nucleic acid. The reaction mix containing the nucleic acid flows to an analysis unit in the channel for analysis.

Nasarabadi, Shanavaz (Livermore, CA)

2011-01-11T23:59:59.000Z

29

E-Print Network 3.0 - ampliprep nucleic acid Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Affinity for Nucleic Acids Summary: for Nucleic Acids Coby B. Carlson and Peter A. Beal* Department of Chemistry, UniVersity of Utah, 315 South... if immobilization of a PAC...

30

E-Print Network 3.0 - azobenzene-modified nucleic acid Sample...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Affinity for Nucleic Acids Summary: for Nucleic Acids Coby B. Carlson and Peter A. Beal* Department of Chemistry, UniVersity of Utah, 315 South... if immobilization of a PAC...

31

Polypeptides having cellulolytic enhancing activity and nucleic acids encoding same  

DOE Patents [OSTI]

The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods for producing and using the polypeptides.

Brown, Kimberly; Harris, Paul; Zaretsky, Elizabeth; Re, Edward; Vlasenko, Elena; McFarland, Keith; Lopez de Leon, Alfredo

2012-10-16T23:59:59.000Z

32

7-9/99 Neuman Chapter 23 Nucleic Acids  

E-Print Network [OSTI]

7-9/99 Neuman Chapter 23 0 Chapter 23 Nucleic Acids from Organic Chemistry by Robert C. Neuman, Jr. Professor of Chemistry, emeritus University of California, Riverside orgchembyneuman@yahoo.com ://web.chem.ucsb.edu/~neuman/orgchembyneuman/> Chapter Outline of the Book

Reed, Christopher A.

33

Multiple Sequence Alignments of Partially Coding Nucleic Acid Sequences  

E-Print Network [OSTI]

Multiple Sequence Alignments of Partially Coding Nucleic Acid Sequences Roman R. Stocsits1 , Ivo L Fe Institute, 1399 Hyde Park Rd., Santa Fe NM 87501, USA Email: Roman R. Stocsits - roman of the available sequence data was pre- sented very recently [12]. SARGLSSTVSLGQFEHWSPR NARNLSDTVS

Stadler, Peter F.

34

Polypeptides having cellulolytic enhancing activity and nucleic acids encoding same  

DOE Patents [OSTI]

The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods for producing and using the polypeptides.

Brown, Kimberly; Harris, Paul; Zaretsky, Elizabeth; Re, Edward; Vlasenko, Elena; McFarland, Keith; Lopez de Leon, Alfredo

2014-09-30T23:59:59.000Z

35

Polypeptides having cellulolytic enhancing activity and nucleic acids encoding same  

SciTech Connect (OSTI)

The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods for producing and using the polypeptides.

Brown, Kimberly; Harris, Paul; Zaretsky, Elizabeth; Re, Edward; Vlasenko, Elena; McFarland, Keith; Lopez de Leon, Alfredo

2010-06-22T23:59:59.000Z

36

Mosaic protein and nucleic acid vaccines against hepatitis C virus  

DOE Patents [OSTI]

The invention relates to immunogenic compositions useful as HCV vaccines. Provided are HCV mosaic polypeptide and nucleic acid compositions which provide higher levels of T-cell epitope coverage while minimizing the occurrence of unnatural and rare epitopes compared to natural HCV polypeptides and consensus HCV sequences.

Yusim, Karina; Korber, Bette T. M.; Kuiken, Carla L.; Fischer, William M.

2013-06-11T23:59:59.000Z

37

Cell cycle nucleic acids, polypeptides and uses thereof  

DOE Patents [OSTI]

The invention provides isolated nucleic acids and their encoded proteins that are involved in cell cycle regulation. The invention further provides recombinant expression cassettes, host cells, transgenic plants, and antibody compositions. The present invention provides methods and compositions relating to altering cell cycle protein content, cell cycle progression, cell number and/or composition of plants.

Gordon-Kamm, William J. (Urbandale, IA); Lowe, Keith S. (Johnston, IA); Larkins, Brian A. (Tucson, AZ); Dilkes, Brian R. (Tucson, AZ); Sun, Yuejin (Westfield, IN)

2007-08-14T23:59:59.000Z

38

Universal nucleic acids sample preparation method for cells, spores and their mixture  

DOE Patents [OSTI]

The present invention relates to a method for extracting nucleic acids from biological samples. More specifically the invention relates to a universal method for extracting nucleic acids from unidentified biological samples. An advantage of the presently invented method is its ability to effectively and efficiently extract nucleic acids from a variety of different cell types including but not limited to prokaryotic or eukaryotic cells and/or recalcitrant organisms (i.e. spores). Unlike prior art methods which are focused on extracting nucleic acids from vegetative cell or spores, the present invention effectively extracts nucleic acids from spores, multiple cell types or mixtures thereof using a single method. Important that the invented method has demonstrated an ability to extract nucleic acids from spores and vegetative bacterial cells with similar levels effectiveness. The invented method employs a multi-step protocol which erodes the cell structure of the biological sample, isolates, labels, fragments nucleic acids and purifies labeled samples from the excess of dye.

Bavykin, Sergei (Darien, IL)

2011-01-18T23:59:59.000Z

39

Method and apparatus for staining immobilized nucleic acids  

DOE Patents [OSTI]

A method for staining immobilized nucleic acids includes the steps of affixing DNA probes to a solid substrate, moving target DNA material into proximity with the DNA probes, whereby the target DNA hybridized with specific ones of the DNA probes, and moving a fluorescent dye into proximity with the hybridized target DNA, whereby the fluorescent dye binds to the hybridized DNA to enable subsequent detection of fluorescence.

Ramsey, J. Michael (Knoxville, TN); Foote, Robert S. (Oak Ridge, TN); Jacobson, Stephen C. (Knoxville, TN)

2000-01-01T23:59:59.000Z

40

Nucleic acids encoding human trithorax protein  

DOE Patents [OSTI]

In accordance with the present invention, there is provided an isolated peptide having the characteristics of human trithorax protein (as well as DNA encoding same, antisense DNA derived therefrom and antagonists therefor). The invention peptide is characterized by having a DNA binding domain comprising multiple zinc fingers and at least 40% amino acid identity with respect to the DNA binding domain of Drosophila trithorax protein and at least 70% conserved sequence with respect to the DNA binding domain of Drosophila trithorax protein, and wherein said peptide is encoded by a gene located at chromosome 11 of the human genome at q23. Also provided are methods for the treatment of subject(s) suffering from immunodeficiency, developmental abnormality, inherited disease, or cancer by administering to said subject a therapeutically effective amount of one of the above-described agents (i.e., peptide, antagonist therefor, DNA encoding said peptide or antisense DNA derived therefrom). Also provided is a method for the diagnosis, in a subject, of immunodeficiency, developmental abnormality, inherited disease, or cancer associated with disruption of chromosome 11 at q23.

Evans, Glen A. (Encinitas, CA); Djabali, Malek (Marseilles, FR); Selleri, Licia (Del Mar, CA); Parry, Pauline (San Diego, CA)

2001-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


41

Nucleic acid modifications in bacterial pathogens - impact on pathogenesis, diagnosis, and therapy  

E-Print Network [OSTI]

Nucleic acids are subject to extensive chemical modification by all organisms. These modifications display incredible structural diversity, and some are essential for survival. Intriguingly, several of these modifications ...

Russell, Brandon S. (Brandon Skylur)

2014-01-01T23:59:59.000Z

42

BGL7 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl7, and the corresponding BGL7 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL7, recombinant BGL7 proteins and methods for producing the same.

Dunn-Coleman, Nigel; Ward, Michael

2014-03-25T23:59:59.000Z

43

BGL7 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl7, and the corresponding BGL7 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL7, recombinant BGL7 proteins and methods for producing the same.

Dunn-Coleman, Nigel; Ward, Michael

2013-01-29T23:59:59.000Z

44

BGL6 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl6, and the corresponding BGL6 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL6, recombinant BGL6 proteins and methods for producing the same.

Dunn-Coleman, Nigel; Ward, Michael

2014-03-04T23:59:59.000Z

45

BGL6 .beta.-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl6, and the corresponding BGL6 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL6, recombinant BGL6 proteins and methods for producing the same.

Dunn-Coleman, Nigel; Ward, Michael

2012-10-02T23:59:59.000Z

46

BGL4 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl4, and the corresponding BGL4 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL4, recombinant BGL4 proteins and methods for producing the same.

Dunn-Coleman, Nigel (Los Gatos, CA) [Los Gatos, CA; Goedegebuur, Frits (Vlaardingen, NL) [Vlaardingen, NL; Ward, Michael (San Francisco, CA) [San Francisco, CA; Yao, Jian (Sunnyvale, CA) [Sunnyvale, CA

2008-01-22T23:59:59.000Z

47

BGL3 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl3, and the corresponding BGL3 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL3, recombinant BGL3 proteins and methods for producing the same.

Dunn-Coleman, Nigel (Los Gatos, CA); Goedegebuur, Frits (Vlaardingen, NL); Ward, Michael (San Francisco, CA); Yao, Jian (Sunnyvale, CA)

2008-04-01T23:59:59.000Z

48

BGL5 .beta.-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl5, and the corresponding BGL5 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL5, recombinant BGL5 proteins and methods for producing the same.

Dunn-Coleman, Nigel (Los Gatos, CA); Goedegebuur, Frits (Vlaardingen, NL); Ward, Michael (San Francisco, CA); Yao, Jian (Sunnyvale, CA)

2008-03-18T23:59:59.000Z

49

BGL3 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl3, and the corresponding BGL3 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL3, recombinant BGL3 proteins and methods for producing the same.

Dunn-Coleman, Nigel (Los Gatos, CA); Goedegebuur, Frits (Vlaardingen, NL); Ward, Michael (San Francisco, CA); Yao, Jian (Sunnyvale, CA)

2011-06-14T23:59:59.000Z

50

BGL4 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl4, and the corresponding BGL4 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL4, recombinant BGL4 proteins and methods for producing the same.

Dunn-Coleman, Nigel (Los Gatos, CA); Goedegebuur, Frits (Vlaardingen, NL); Ward, Michael (San Francisco, CA); Yao, Jian (Sunnyvale, CA)

2011-12-06T23:59:59.000Z

51

BGL3 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl3, and the corresponding BGL3 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL3, recombinant BGL3 proteins and methods for producing the same.

Dunn-Coleman, Nigel (Los Gatos, CA); Goedegebuur, Frits (Vlaardingen, NL); Ward, Michael (San Francisco, CA); Yao, Jian (Sunnyvale, CA)

2007-09-25T23:59:59.000Z

52

BGL3 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl3, and the corresponding BGL3 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL3, recombinant BGL3 proteins and methods for producing the same.

Dunn-Coleman, Nigel; Goedegebuur, Frits; Ward, Michael; Yao, Jian

2012-10-30T23:59:59.000Z

53

BGL7 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides a novel .beta.-glucosidase nucleic acid sequence, designated bgl7, and the corresponding BGL7 amino acid sequence. The invention also provides expression vectors and host cells comprising a nucleic acid sequence encoding BGL7, recombinant BGL7 proteins and methods for producing the same.

Dunn-Coleman, Nigel (Los Gatos, CA); Ward, Michael (San Francisco, CA)

2008-08-05T23:59:59.000Z

54

Nucleic acid sequence detection using multiplexed oligonucleotide PCR  

DOE Patents [OSTI]

Methods for rapidly detecting single or multiple sequence alleles in a sample nucleic acid are described. Provided are all of the oligonucleotide pairs capable of annealing specifically to a target allele and discriminating among possible sequences thereof, and ligating to each other to form an oligonucleotide complex when a particular sequence feature is present (or, alternatively, absent) in the sample nucleic acid. The design of each oligonucleotide pair permits the subsequent high-level PCR amplification of a specific amplicon when the oligonucleotide complex is formed, but not when the oligonucleotide complex is not formed. The presence or absence of the specific amplicon is used to detect the allele. Detection of the specific amplicon may be achieved using a variety of methods well known in the art, including without limitation, oligonucleotide capture onto DNA chips or microarrays, oligonucleotide capture onto beads or microspheres, electrophoresis, and mass spectrometry. Various labels and address-capture tags may be employed in the amplicon detection step of multiplexed assays, as further described herein.

Nolan, John P. (Santa Fe, NM); White, P. Scott (Los Alamos, NM)

2006-12-26T23:59:59.000Z

55

Structure and function of circadian clock proteins and deuterium isotope effects in nucleic acid hydrogen bonds  

E-Print Network [OSTI]

-terminal domain. Hydrogen bonds are of paramount importance in nucleic acid structure and function. Here we show that changes in the width and anharmonicity of vibrational potential energy wells of hydrogen bonded groups can be measured in nucleic acids and can...

Vakonakis, Ioannis

2005-08-29T23:59:59.000Z

56

The present invention relates to automated methods of introducing multiple nucleic acid sequences into one or more target cells.  

DOE Patents [OSTI]

The present invention relates to automated methods of introducing multiple nucleic acid sequences into one or more target cells.

Church, George M. (Brookline, MA); Wang, Harris H. (Cambridge, MA); Isaacs, Farren J. (Brookline, MA)

2012-04-10T23:59:59.000Z

57

Understanding barriers to efficient nucleic acid delivery with bioresponsive block copolymers  

E-Print Network [OSTI]

The delivery of nucleic acids has the potential to revolutionize medicine by allowing previously untreatable diseases to be clinically addressed. Viral delivery systems have been held back by immunogenicity and toxicity ...

Bonner, Daniel Kenneth

2012-01-01T23:59:59.000Z

58

Studies toward biomimetic claisen condensation using nucleic acid templates and ribozyme catalysis  

E-Print Network [OSTI]

Many different experimental approaches were attempted to achieve carbon-carbon bond formation by nucleic acid template-directed reactions and ribozyme catalysis as potential lipid synthesizing machineries in the RNA world. A novel biomimetic...

Ryu, Youngha

2005-08-29T23:59:59.000Z

59

Stable nitrogen isotope measurements of marine bacterial proteins and nucleic acids: tracers of microbial activity  

E-Print Network [OSTI]

and nucleic acids from cultures and environmental samples were analyzed to determine if protein []15N reliably reflects whole cell []15N. In batch culture experiments, the net fractionation between Vibrio harveyi and bacterial protein extracts, varied as a...

Kovacs, Jeffrey Paul

1996-01-01T23:59:59.000Z

60

Development of polymer and lipid materials for enhanced delivery of nucleic acids and proteins  

E-Print Network [OSTI]

The development of synthetic vectors enabling efficient intracellular delivery of macromolecular therapeutics such as nucleic acids and proteins could potentially catalyze the clinical translation of many gene and protein-based ...

Eltoukhy, Ahmed Atef

2013-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


61

Point of Attachment and Sequence of Immobilized Peptide-Acridine Conjugates Control Affinity for Nucleic Acids  

E-Print Network [OSTI]

for Nucleic Acids Coby B. Carlson and Peter A. Beal* Department of Chemistry, UniVersity of Utah, 315 South) was constructed * To whom correspondence should be addressed. E-mail: beal@ chemistry.chem.utah.edu. Figure 1

Beal, Peter A.

62

Method for producing labeled single-stranded nucleic acid probes  

DOE Patents [OSTI]

Disclosed is a method for the introduction of unidirectional deletions in a cloned DNA segment. More specifically, the method comprises providing a recombinant DNA construct comprising a DNA segment of interest inserted in a cloning vector, the cloning vector having an f1 endonuclease recognition sequence adjacent to the insertion site of the DNA segment of interest. The recombinant DNA construct is then contacted with the protein pII encoded by gene II of phage f1 thereby generating a single-stranded nick. The nicked DNA is then contacted with E. coli Exonuclease III thereby expanding the single-stranded nick into a single-stranded gap. The single-stranded gapped DNA is then contacted with a single-strand-specific endonuclease thereby producing a linearized DNA molecule containing a double-stranded deletion corresponding in size to the single-stranded gap. The DNA treated in this manner is then incubated with DNA ligase under conditions appropriate for ligation. Also disclosed is a method for producing single-stranded DNA probes. In this embodiment, single-stranded gapped DNA, produced as described above, is contacted with a DNA polymerase in the presence of labeled nucleotides to fill in the gap. This DNA is then linearized by digestion with a restriction enzyme which cuts outside the DNA segment of interest. The product of this digestion is then denatured to produce a labeled single-stranded nucleic acid probe.

Dunn, John J. (Bellport, NY); Quesada, Mark A. (Middle Island, NY); Randesi, Matthew (Upton, NY)

1999-10-19T23:59:59.000Z

63

Methods of staining target chromosomal DNA employing high complexity nucleic acid probes  

DOE Patents [OSTI]

Methods and compositions for staining based upon nucleic acid sequence that employ nucleic acid probes are provided. Said methods produce staining patterns that can be tailored for specific cytogenetic analyses. Said probes are appropriate for in situ hybridization and stain both interphase and metaphase chromosomal material with reliable signals. The nucleic acid probes are typically of a complexity greater than 50 kb, the complexity depending upon the cytogenetic application. Methods and reagents are provided for the detection of genetic rearrangements. Probes and test kits are provided for use in detecting genetic rearrangements, particularly for use in tumor cytogenetics, in the detection of disease related loci, specifically cancer, such as chronic myelogenous leukemia (CML), retinoblastoma, ovarian and uterine cancers, and for biological dosimetry. Methods and reagents are described for cytogenetic research, for the differentiation of cytogenetically similar but genetically different diseases, and for many prognostic and diagnostic applications.

Gray, Joe W.; Pinkel, Daniel; Kallioniemi, Ol'li-Pekka; Kallioniemi, Anne; Sakamoto, Masaru

2006-10-03T23:59:59.000Z

64

Methods and kits for nucleic acid analysis using fluorescence resonance energy transfer  

DOE Patents [OSTI]

A method for detecting the presence of a target nucleotide or sequence of nucleotides in a nucleic acid is disclosed. The method is comprised of forming an oligonucleotide labeled with two fluorophores on the nucleic acid target site. The doubly labeled oligonucleotide is formed by addition of a singly labeled dideoxynucleoside triphosphate to a singly labeled polynucleotide or by ligation of two singly labeled polynucleotides. Detection of fluorescence resonance energy transfer upon denaturation indicates the presence of the target. Kits are also provided. The method is particularly applicable to genotyping.

Kwok, Pui-Yan (Clayton, MO); Chen, Xiangning (St. Louis, MO)

1999-01-01T23:59:59.000Z

65

E-Print Network 3.0 - acids research database Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

5 > >> 1 The Peptaibol Database: a database for sequences and structures of naturally occurring peptaibols Summary: , Database issue D593D594 DOI: 10.1093nargkh077 Nucleic...

66

Structural aspects of catalytic mechanisms of endonucleases and their binding to nucleic acids  

SciTech Connect (OSTI)

Endonucleases (EC 3.1) are enzymes of the hydrolase class that catalyze the hydrolytic cleavage of deoxyribonucleic and ribonucleic acids at any region of the polynucleotide chain. Endonucleases are widely used both in biotechnological processes and in veterinary medicine as antiviral agents. Medical applications of endonucleases in human cancer therapy hold promise. The results of X-ray diffraction studies of the spatial organization of endonucleases and their complexes and the mechanism of their action are analyzed and generalized. An analysis of the structural studies of this class of enzymes showed that the specific binding of enzymes to nucleic acids is characterized by interactions with nitrogen bases and the nucleotide backbone, whereas the nonspecific binding of enzymes is generally characterized by interactions only with the nucleic-acid backbone. It should be taken into account that the specificity can be modulated by metal ions and certain low-molecular-weight organic compounds. To test the hypotheses about specific and nonspecific nucleic-acid-binding proteins, it is necessary to perform additional studies of atomic-resolution three-dimensional structures of enzyme-nucleic-acid complexes by methods of structural biology.

Zhukhlistova, N. E.; Balaev, V. V.; Lyashenko, A. V.; Lashkov, A. A., E-mail: alashkov83@gmail.com [Russian Academy of Sciences, Shubnikov Institute of Crystallography (Russian Federation)

2012-05-15T23:59:59.000Z

67

Nucleosides, Nucleotides, and Nucleic Acids, 25:915, 2006 Copyright C Taylor & Francis Group, LLC  

E-Print Network [OSTI]

Nucleosides, Nucleotides, and Nucleic Acids, 25:9­15, 2006 Copyright C Taylor & Francis Group, LLC-LABELED NUCLEOTIDE SPACER ARM ON INCORPORATION BY THERMOPHILIC DNA POLYMERASES Christopher J. Lacenere 2 Division incor- porate fluorescently labeled nucleotides sequentially was analyzed by a gel based primer

Stoltz, Brian M.

68

Nucleic Acids Research, 2009, 114 doi:10.1093/nar/gkn1064  

E-Print Network [OSTI]

Nucleic Acids Research, 2009, 1­14 doi:10.1093/nar/gkn1064 Allegro: Analyzing expression- ulate. We present Allegro, a method for de-novo dis- covery of cis-regulatory transcriptional programs by a group of co-regulated genes. We show that Allegro is more accurate and sensitive than existing

Shamir, Ron

69

Nucleic acid molecules conferring enhanced ethanol tolerance and microorganisms having enhanced tolerance to ethanol  

DOE Patents [OSTI]

The present invention provides isolated nucleic acid molecules which encode a mutant acetaldehyde-CoA/alcohol dehydrogenase or mutant alcohol dehydrogenase and confer enhanced tolerance to ethanol. The invention also provides related expression vectors, genetically engineered microorganisms having enhanced tolerance to ethanol, as well as methods of making and using such genetically modified microorganisms for production of biofuels based on fermentation of biomass materials.

Brown, Steven; Guss, Adam; Yang, Shihui; Karpinets, Tatiana; Lynd, Lee; Shao, Xiongjun

2014-01-14T23:59:59.000Z

70

Nucleic acids encoding modified human immunodeficiency virus type 1 (HIV-1) group M consensus envelope glycoproteins  

DOE Patents [OSTI]

The present invention relates, in general, to an immunogen and, in particular, to an immunogen for inducing antibodies that neutralizes a wide spectrum of HIV primary isolates and/or to an immunogen that induces a T cell immune response. The invention also relates to a method of inducing anti-HIV antibodies, and/or to a method of inducing a T cell immune response, using such an immunogen. The invention further relates to nucleic acid sequences encoding the present immunogens.

Haynes, Barton F. (Durham, NC); Gao, Feng (Durham, NC); Korber, Bette T. (Los Alamos, NM); Hahn, Beatrice H. (Birmingham, AL); Shaw, George M. (Birmingham, AL); Kothe, Denise (Birmingham, AL); Li, Ying Ying (Hoover, AL); Decker, Julie (Alabaster, AL); Liao, Hua-Xin (Chapel Hill, NC)

2011-12-06T23:59:59.000Z

71

Supplementary Materials: A Partition Function Algorithm for Interacting Nucleic Acid Strands  

E-Print Network [OSTI]

nucleic acid strands by R and S. Strand R is indexed from 1 to LR, and S is indexed from 1 to LS both in 5 to 3 direction. Note that the two strands interact in opposite directions, e.g. R in 5 3 with S in 3 to the ith nucleotide in R and S by iR and iS respectively. An intramolecular base pair between

Will, Sebastian

72

Human retroviruses and AIDS 1996. A compilation and analysis of nucleic acid and amino acid sequences  

SciTech Connect (OSTI)

This compendium and the accompanying floppy diskettes are the result of an effort to compile and rapidly publish all relevant molecular data concerning the human immunodeficiency viruses (HIV) and related retroviruses. The scope of the compendium and database is best summarized by the five parts that it comprises: (1) Nuclear Acid Alignments and Sequences; (2) Amino Acid Alignments; (3) Analysis; (4) Related Sequences; and (5) Database Communications. Information within all the parts is updated throughout the year on the Web site, http://hiv-web.lanl.gov. While this publication could take the form of a review or sequence monograph, it is not so conceived. Instead, the literature from which the database is derived has simply been summarized and some elementary computational analyses have been performed upon the data. Interpretation and commentary have been avoided insofar as possible so that the reader can form his or her own judgments concerning the complex information. In addition to the general descriptions of the parts of the compendium, the user should read the individual introductions for each part.

Myers, G.; Foley, B.; Korber, B. [eds.] [Los Alamos National Lab., NM (United States). Theoretical Div.] [eds.; Los Alamos National Lab., NM (United States). Theoretical Div.; Mellors, J.W. [ed.] [Univ. of Pittsburgh, PA (United States)] [ed.; Univ. of Pittsburgh, PA (United States); Jeang, K.T. [ed.] [National Institutes of Health, Bethesda, MD (United States). Molecular Virology Section] [ed.; National Institutes of Health, Bethesda, MD (United States). Molecular Virology Section; Wain-Hobson, S. [Pasteur Inst., Paris (France)] [ed.] [Pasteur Inst., Paris (France); ed.

1997-04-01T23:59:59.000Z

73

Nucleic Acid Encoding A Lectin-Derived Progenitor Cell Preservation Factor  

DOE Patents [OSTI]

The invention relates to an isolated nucleic acid molecule that encodes a protein that is effective to preserve progenitor cells, such as hematopoietic progenitor cells. The nucleic acid comprises a sequence defined by SEQ ID NO:1, a homolog thereof, or a fragment thereof. The encoded protein has an amino acid sequence that comprises a sequence defined by SEQ ID NO:2, a homolog thereof, or a fragment thereof that contains an amino acid sequence TNNVLQVT. Methods of using the encoded protein for preserving progenitor cells in vitro, ex vivo, and in vivo are also described. The invention, therefore, include methods such as myeloablation therapies for cancer treatment wherein myeloid reconstitution is facilitated by means of the specified protein. Other therapeutic utilities are also enabled through the invention, for example, expanding progenitor cell populations ex vivo to increase chances of engraftation, improving conditions for transporting and storing progenitor cells, and facilitating gene therapy to treat and cure a broad range of life-threatening hematologic diseases.

Colucci, M. Gabriella (Dugenta, IT); Chrispeels, Maarten J. (La Jolla, CA); Moore, Jeffrey G. (New York, NY)

2001-10-30T23:59:59.000Z

74

Method for high-volume sequencing of nucleic acids: random and directed priming with libraries of oligonucleotides  

DOE Patents [OSTI]

Random and directed priming methods for determining nucleotide sequences by enzymatic sequencing techniques, using libraries of primers of lengths 8, 9 or 10 bases, are disclosed. These methods permit direct sequencing of nucleic acids as large as 45,000 base pairs or larger without the necessity for subcloning. Individual primers are used repeatedly to prime sequence reactions in many different nucleic acid molecules. Libraries containing as few as 10,000 octamers, 14,200 nonamers, or 44,000 decamers would have the capacity to determine the sequence of almost any cosmid DNA. Random priming with a fixed set of primers from a smaller library can also be used to initiate the sequencing of individual nucleic acid molecules, with the sequence being completed by directed priming with primers from the library. In contrast to random cloning techniques, a combined random and directed priming strategy is far more efficient. 2 figs.

Studier, F.W.

1995-04-18T23:59:59.000Z

75

Method for high-volume sequencing of nucleic acids: random and directed priming with libraries of oligonucleotides  

DOE Patents [OSTI]

Random and directed priming methods for determining nucleotide sequences by enzymatic sequencing techniques, using libraries of primers of lengths 8, 9 or 10 bases, are disclosed. These methods permit direct sequencing of nucleic acids as large as 45,000 base pairs or larger without the necessity for subcloning. Individual primers are used repeatedly to prime sequence reactions in many different nucleic acid molecules. Libraries containing as few as 10,000 octamers, 14,200 nonamers, or 44,000 decamers would have the capacity to determine the sequence of almost any cosmid DNA. Random priming with a fixed set of primers from a smaller library can also be used to initiate the sequencing of individual nucleic acid molecules, with the sequence being completed by directed priming with primers from the library. In contrast to random cloning techniques, a combined random and directed priming strategy is far more efficient.

Studier, F. William (Stony Brook, NY)

1995-04-18T23:59:59.000Z

76

Methods of combined bioprocessing and related microorganisms, thermophilic and/or acidophilic enzymes, and nucleic acids encoding said enzymes  

DOE Patents [OSTI]

A genetically modified organism comprising: at least one nucleic acid sequence and/or at least one recombinant nucleic acid isolated from Alicyclobacillus acidocaldarius and encoding a polypeptide involved in at least partially degrading, cleaving, transporting, metabolizing, or removing polysaccharides, cellulose, lignocellulose, hemicellulose, lignin, starch, sugars, sugar oligomers, carbohydrates, complex carbohydrates, chitin, heteroxylans, glycosides, xylan-, glucan-, galactan-, or mannan-decorating groups; and at least one nucleic acid sequence and/or at least one recombinant nucleic acid encoding a polypeptide involved in fermenting sugar molecules to a product. Additionally, enzymatic and/or proteinaceous extracts may be isolated from one or more genetically modified organisms. The extracts are utilized to convert biomass into a product. Further provided are methods of converting biomass into products comprising: placing the genetically modified organism and/or enzymatic extracts thereof in fluid contact with polysaccharides, cellulose, lignocellulose, hemicellulose, lignin, starch, sugars, sugar oligomers, carbohydrates, complex carbohydrates, chitin, heteroxylans, glycosides, and/or xylan-, glucan-, galactan-, or mannan-decorating groups.

Thompson, David N; Apel, William A; Thompson, Vicki S; Ward, Thomas E

2014-04-08T23:59:59.000Z

77

Methods of combined bioprocessing and related microorganisms, thermophilic and/or acidophilic enzymes, and nucleic acids encoding said enzymes  

DOE Patents [OSTI]

A genetically modified organism comprising: at least one nucleic acid sequence and/or at least one recombinant nucleic acid isolated from Alicyclobacillus acidocaldarius and encoding a polypeptide involved in at least partially degrading, cleaving, transporting, metabolizing, or removing polysaccharides, cellulose, lignocellulose, hemicellulose, lignin, starch, sugars, sugar oligomers, carbohydrates, complex carbohydrates, chitin, heteroxylans, glycosides, xylan-, glucan-, galactan-, or mannan-decorating groups; and at least one nucleic acid sequence and/or at least one recombinant nucleic acid encoding a polypeptide involved in fermenting sugar molecules to a product. Additionally, enzymatic and/or proteinaceous extracts may be isolated from one or more genetically modified organisms. The extracts are utilized to convert biomass into a product. Further provided are methods of converting biomass into products comprising: placing the genetically modified organism and/or enzymatic extracts thereof in fluid contact with polysaccharides, cellulose, lignocellulose, hemicellulose, lignin, starch, sugars, sugar oligomers, carbohydrates, complex carbohydrates, chitin, heteroxylans, glycosides, and/or xylan-, glucan-, galactan-, or mannan-decorating groups.

Thompson, David N; Apel, William A; Thompson, Vicki S; Ward, Thomas E

2013-07-23T23:59:59.000Z

78

Nucleic Acids Research, Vol. 20, No. 3 613 An alfalfa cDNA encodes a protein with similarity to  

E-Print Network [OSTI]

Nucleic Acids Research, Vol. 20, No. 3 613 An alfalfa cDNA encodes a protein with similarity to an understanding of the function of these proteins in RNA processing. We have isolated an alfalfa cDNA whose, the putative alfalfa protein is clearly related to the human snRNP-E protein. However, since the protein

Hirt, Heribert

79

Aptamer- and nucleic acid enzyme-based systems for simultaneous detection of multiple analytes  

DOE Patents [OSTI]

The present invention provides aptamer- and nucleic acid enzyme-based systems for simultaneously determining the presence and optionally the concentration of multiple analytes in a sample. Methods of utilizing the system and kits that include the sensor components are also provided. The system includes a first reactive polynucleotide that reacts to a first analyte; a second reactive polynucleotide that reacts to a second analyte; a third polynucleotide; a fourth polynucleotide; a first particle, coupled to the third polynucleotide; a second particle, coupled to the fourth polynucleotide; and at least one quencher, for quenching emissions of the first and second quantum dots, coupled to the first and second reactive polynucleotides. The first particle includes a quantum dot having a first emission wavelength. The second particle includes a second quantum dot having a second emission wavelength different from the first emission wavelength. The third polynucleotide and the fourth polynucleotide are different.

Lu, Yi (Champaign, IL); Liu, Juewen (Albuquerque, NM)

2011-11-15T23:59:59.000Z

80

Site-Selective Binding of Nanoparticles to Double-Stranded DNA via Peptide Nucleic Acid "Invasion"  

SciTech Connect (OSTI)

We demonstrate a novel method for by-design placement of nano-objects along double-stranded (ds) DNA. A molecular intercalator, designed as a peptide nucleic acid (PNA)-DNA chimera, is able to invade dsDNA at the PNA-side due to the hybridization specificity between PNA and one of the duplex strands. At the same time, the single-stranded (ss) DNA tail of the chimera, allows for anchoring of nano-objects that have been functionalized with complementary ssDNA. The developed method is applied for interparticle attachment and for the fabrication of particle clusters using a dsDNA template. This method significantly broadens the molecular toolbox for constructing nanoscale systems by including the most conventional not yet utilized DNA motif, double helix DNA.

Stadler, A.L.; van der Lelie, D.; Sun, D.; Maye, M. M.; Gang, O.

2011-04-01T23:59:59.000Z

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


81

Quantification of false positive reduction in nucleic acid purification on hemorrhagic fever DNA.  

SciTech Connect (OSTI)

Columbia University has developed a sensitive highly multiplexed system for genetic identification of nucleic acid targets. The primary obstacle to implementing this technology is the high rate of false positives due to high levels of unbound reporters that remain within the system after hybridization. The ability to distinguish between free reporters and reporters bound to targets limits the use of this technology. We previously demonstrated a new electrokinetic method for binary separation of kb pair long DNA molecules and oligonucleotides. The purpose of this project 99864 is to take these previous demonstrations and further develop the technique and hardware for field use. Specifically, our objective was to implement separation in a heterogeneous sample (containing target DNA and background oligo), to perform the separation in a flow-based device, and to develop all of the components necessary for field testing a breadboard prototype system.

James, Conrad D.; Pohl, Kenneth Roy; Derzon, Mark Steven; McClain, Jaime; Achyuthan, Komandoor

2006-11-01T23:59:59.000Z

82

Exhaustive Database Searching for Amino Acid Mutations in Proteomes  

SciTech Connect (OSTI)

Amino acid mutations in proteins can be found by searching tandem mass spectra acquired in shotgun proteomics experiments against protein sequences predicted from genomes. Traditionally, unconstrained searches for amino acid mutations have been accomplished by using a sequence tagging approach that combines de novo sequencing with database searching. However, this approach is limited by the performance of de novo sequencing. The Sipros algorithm v2.0 was developed to perform unconstrained database searching using high-resolution tandem mass spectra by exhaustively enumerating all single non-isobaric mutations for every residue in a protein database. The performance of Sipros for amino acid mutation identification exceeded that of an established sequence tagging algorithm, Inspect, based on benchmarking results from a Rhodopseudomonas palustris proteomics dataset. To demonstrate the viability of the algorithm for meta-proteomics, Sipros was used to identify amino acid mutations in a natural microbial community in acid mine drainage.

Hyatt, Philip Douglas [ORNL; Pan, Chongle [ORNL

2012-01-01T23:59:59.000Z

83

Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids  

SciTech Connect (OSTI)

A new method is introduced to compute X-ray solution scattering profiles from atomic models of macromolecules. The three-dimensional version of the Reference Interaction Site Model (RISM) from liquid-state statistical mechanics is employed to compute the solvent distribution around the solute, including both water and ions. X-ray scattering profiles are computed from this distribution together with the solute geometry. We describe an efficient procedure for performing this calculation employing a Lebedev grid for the angular averaging. The intensity profiles (which involve no adjustable parameters) match experiment and molecular dynamics simulations up to wide angle for two proteins (lysozyme and myoglobin) in water, as well as the small-angle profiles for a dozen biomolecules taken from the BioIsis.net database. The RISM model is especially well-suited for studies of nucleic acids in salt solution. Use of fiber-diffraction models for the structure of duplex DNA in solution yields close agreement with the observed scattering profiles in both the small and wide angle scattering (SAXS and WAXS) regimes. In addition, computed profiles of anomalous SAXS signals (for Rb{sup +} and Sr{sup 2+}) emphasize the ionic contribution to scattering and are in reasonable agreement with experiment. In cases where an absolute calibration of the experimental data at q = 0 is available, one can extract a count of the excess number of waters and ions; computed values depend on the closure that is assumed in the solution of the Ornstein–Zernike equations, with results from the Kovalenko–Hirata closure being closest to experiment for the cases studied here.

Nguyen, Hung T. [BioMaPS Institute for Quantitative Biology, Rutgers University, Piscataway, New Jersey 08854 (United States); Pabit, Suzette A.; Meisburger, Steve P.; Pollack, Lois [School of Applied and Engineering Physics, Cornell University, Ithaca, New York 14853 (United States); Case, David A., E-mail: case@biomaps.rutgers.edu [BioMaPS Institute for Quantitative Biology, Rutgers University, Piscataway, New Jersey 08854 (United States); Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854 (United States)

2014-12-14T23:59:59.000Z

84

1996 Oxford University Press 47094718Nucleic Acids Research, 1996, Vol. 24, No. 23 Logitlinear models for the prediction of splice sites in  

E-Print Network [OSTI]

© 1996 Oxford University Press 4709­4718Nucleic Acids Research, 1996, Vol. 24, No. 23 Logitlinear the degree of fit to some average signal pattern around known splice sites in a learning set (e.g., 3

Brendel, Volker

85

Repeat sequence chromosome specific nucleic acid probes and methods of preparing and using  

DOE Patents [OSTI]

A primer directed DNA amplification method to isolate efficiently chromosome-specific repeated DNA wherein degenerate oligonucleotide primers are used is disclosed. The probes produced are a heterogeneous mixture that can be used with blocking DNA as a chromosome-specific staining reagent, and/or the elements of the mixture can be screened for high specificity, size and/or high degree of repetition among other parameters. The degenerate primers are sets of primers that vary in sequence but are substantially complementary to highly repeated nucleic acid sequences, preferably clustered within the template DNA, for example, pericentromeric alpha satellite repeat sequences. The template DNA is preferably chromosome-specific. Exemplary primers and probes are disclosed. The probes of this invention can be used to determine the number of chromosomes of a specific type in metaphase spreads, in germ line and/or somatic cell interphase nuclei, micronuclei and/or in tissue sections. Also provided is a method to select arbitrarily repeat sequence probes that can be screened for chromosome-specificity. 18 figs.

Weier, H.U.G.; Gray, J.W.

1995-06-27T23:59:59.000Z

86

BIO 548--NUCLEIC ACIDS AND PROTEIN SYNTHESIS--FALL 2014 Coursemaster  

E-Print Network [OSTI]

in organic chemistry, Cell Biology and Genetics is also very useful. Formal lectures in all areas of nucleic for the course. The listed books are recommended as sources of background information for the lectures

87

Nucleic Acid-Based Detection and Identification of Bacterial and Fungal Plant Pathogens - Final Report  

SciTech Connect (OSTI)

The threat to American interests from terrorists is not limited to attacks against humans. Terrorists might seek to inflict damage to the U.S. economy by attacking our agricultural sector. Infection of commodity crops by bacterial or fungal crop pathogens could adversely impact U.S. agriculture, either directly from damage to crops or indirectly from damage to our ability to export crops suspected of contamination. Recognizing a terrorist attack against U.S. agriculture, to be able to prosecute the terrorists, is among the responsibilities of the members of Hazardous Material Response Unit (HMRU) of the Federal Bureau of Investigation (FBI). Nucleic acid analysis of plant pathogen strains by the use of polymerase chain reaction (PCR) amplification techniques is a powerful method for determining the exact identity of pathogens, as well as their possible region of origin. This type of analysis, however, requires that PCR assays be developed specific to each particular pathogen strain, and analysis protocols developed that are specific to the particular instrument used for detection. The objectives of the work described here were threefold: 1) to assess the potential terrorist threat to U.S. agricultural crops, 2) to determine whether suitable assays exist to monitor that threat, and 3) where assays are needed for priority plant pathogen threats, to modify or develop those assays for use by specialists at the HMRU. The assessment of potential threat to U.S. commodity crops and the availability of assays for those threats were described in detail in the Technical Requirements Document (9) and will be summarized in this report. This report addresses development of specific assays identified in the Technical Requirements Document, and offers recommendations for future development to ensure that HMRU specialists will be prepared with the PCR assays they need to protect against the threat of economic terrorism.

Kingsley, Mark T.

2001-03-13T23:59:59.000Z

88

Nucleic Acid-Based Detection and Identification of Bacterial and Fungal Plant Pathogens - Final Report  

SciTech Connect (OSTI)

The threat to American interests from terrorists is not limited to attacks against humans. Terrorists might seek to inflict damage to the U.S. economy by attacking our agricultural sector. Infection of commodity crops by bacterial or fungal crop pathogens could adversely impact U.S. agriculture, either directly from damage to crops or indirectly from damage to our ability to export crops suspected of contamination. Recognizing a terrorist attack against U.S. agriculture, to be able to prosecute the terrorists, is among the responsibilities of the members of Hazardous Material Response Unit (HMRU) of the Federal Bureau of Investigation (FBI). Nucleic acid analysis of plant pathogen strains by the use of polymerase chain reaction (PCR) amplification techniques is a powerful method for determining the exact identity of pathogens, as well as their possible region of origin. This type of analysis, however, requires that PCR assays be developed specific to each particular pathogen strain, an d analysis protocols developed that are specific to the particular instrument used for detection. The objectives of the work described here were threefold: (1) to assess the potential terrorist threat to U.S. agricultural crops, (2) to determine whether suitable assays exist to monitor that threat, and (3) where assays are needed for priority plant pathogen threats, to modify or develop those assays for use by specialists at the HMRU. The assessment of potential threat to U.S. commodity crops and the availability of assays for those threats were described in detail in the Technical Requirements Document (9) and will be summarized in this report. This report addresses development of specific assays identified in the Technical Requirements Document, and offers recommendations for future development to ensure that HMRU specialists will be prepared with the PCR assays they need to protect against the threat of economic terrorism.

Kingsley, Mark T

2001-03-13T23:59:59.000Z

89

Does Water Play a Structural Role in the Folding of Small Nucleic Acids? Eric J. Sorin,* Young Min Rhee,* and Vijay S. Pande*yz  

E-Print Network [OSTI]

Does Water Play a Structural Role in the Folding of Small Nucleic Acids? Eric J. Sorin,* Young Min Rhee,* and Vijay S. Pande*yz Departments of *Chemistry and y Structural Biology, and z Stanford character of the solvent. Here we consider what role the discrete properties of water and ions play

Sorin, Eric J.

90

Human Retroviruses and AIDS. A compilation and analysis of nucleic acid and amino acid sequences: I--II; III--V  

SciTech Connect (OSTI)

This compendium and the accompanying floppy diskettes are the result of an effort to compile and rapidly publish all relevant molecular data concerning the human immunodeficiency viruses (HIV) and related retroviruses. The scope of the compendium and database is best summarized by the five parts that it comprises: (I) HIV and SIV Nucleotide Sequences; (II) Amino Acid Sequences; (III) Analyses; (IV) Related Sequences; and (V) Database Communications. Information within all the parts is updated at least twice in each year, which accounts for the modes of binding and pagination in the compendium.

Myers, G.; Korber, B. [eds.] [Los Alamos National Lab., NM (United States)] [eds.; Los Alamos National Lab., NM (United States); Wain-Hobson, S. [ed.] [Laboratory of Molecular Retrovirology, Pasteur Inst.] [ed.; Laboratory of Molecular Retrovirology, Pasteur Inst.; Smith, R.F. [ed.] [Baylor Coll. of Medicine, Houston, TX (United States). Dept. of Pharmacology] [ed.; Baylor Coll. of Medicine, Houston, TX (United States). Dept. of Pharmacology; Pavlakis, G.N. [ed.] [National Cancer Inst., Frederick, MD (United States). Cancer Research Facility] [ed.; National Cancer Inst., Frederick, MD (United States). Cancer Research Facility

1993-12-31T23:59:59.000Z

91

Supplementary Information An In Vitro Translation, Selection, and Amplification System for Peptide Nucleic Acids  

E-Print Network [OSTI]

% trifluoroacetic acid in water for 10 min at room temperature; (iv) reverse-phase HPLC purification of the MMTS1 Supplementary Information An In Vitro Translation, Selection, and Amplification System available reagents and solvents were purchased from Aldrich and used without further purification. All PNA

Liu, David R.

92

E-Print Network 3.0 - acid house juergen Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Division of Cell Biology and Immunology, HZI Summary: , Karst U, Fischer E, Wehland J, Jansch L. Nucleic Acids Res. 2006; 34(Database issue):D402-6. Jenzora A... Research (HZI)...

93

Nucleic acid molecules encoding isopentenyl monophosphate kinase, and methods of use  

DOE Patents [OSTI]

A cDNA encoding isopentenyl monophosphate kinase (IPK) from peppermint (Mentha x piperita) has been isolated and sequenced, and the corresponding amino acid sequence has been determined. Accordingly, an isolated DNA sequence (SEQ ID NO:1) is provided which codes for the expression of isopentenyl monophosphate kinase (SEQ ID NO:2), from peppermint (Mentha x piperita). In other aspects, replicable recombinant cloning vehicles are provided which code for isopentenyl monophosphate kinase, or for a base sequence sufficiently complementary to at least a portion of isopentenyl monophosphate kinase DNA or RNA to enable hybridization therewith. In yet other aspects, modified host cells are provided that have been transformed, transfected, infected and/or injected with a recombinant cloning vehicle and/or DNA sequence encoding isopentenyl monophosphate kinase. Thus, systems and methods are provided for the recombinant expression of the aforementioned recombinant isopentenyl monophosphate kinase that may be used to facilitate its production, isolation and purification in significant amounts. Recombinant isopentenyl monophosphate kinase may be used to obtain expression or enhanced expression of isopentenyl monophosphate kinase in plants in order to enhance the production of isopentenyl monophosphate kinase, or isoprenoids derived therefrom, or may be otherwise employed for the regulation or expression of isopentenyl monophosphate kinase, or the production of its products.

Croteau, Rodney B. (Pullman, WA); Lange, Bernd M. (Pullman, WA)

2001-01-01T23:59:59.000Z

94

Nucleic and amino acid sequences relating to a novel transketolase, and methods for the expression thereof  

DOE Patents [OSTI]

cDNAs encoding 1-deoxyxylulose-5-phosphate synthase from peppermint (Mentha piperita) have been isolated and sequenced, and the corresponding amino acid sequences have been determined. Accordingly, isolated DNA sequences (SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7) are provided which code for the expression of 1-deoxyxylulose-5-phosphate synthase from plants. In another aspect the present invention provides for isolated, recombinant DXPS proteins, such as the proteins having the sequences set forth in SEQ ID NO:4, SEQ ID NO:6 and SEQ ID NO:8. In other aspects, replicable recombinant cloning vehicles are provided which code for plant 1-deoxyxylulose-5-phosphate synthases, or for a base sequence sufficiently complementary to at least a portion of 1-deoxyxylulose-5-phosphate synthase DNA or RNA to enable hybridization therewith. In yet other aspects, modified host cells are provided that have been transformed, transfected, infected and/or injected with a recombinant cloning vehicle and/or DNA sequence encoding a plant 1-deoxyxylulose-5-phosphate synthase. Thus, systems and methods are provided for the recombinant expression of the aforementioned recombinant 1-deoxyxylulose-5-phosphate synthase that may be used to facilitate its production, isolation and purification in significant amounts. Recombinant 1-deoxyxylulose-5-phosphate synthase may be used to obtain expression or enhanced expression of 1-deoxyxylulose-5-phosphate synthase in plants in order to enhance the production of 1-deoxyxylulose-5-phosphate, or its derivatives such as isopentenyl diphosphate (BP), or may be otherwise employed for the regulation or expression of 1-deoxyxylulose-5-phosphate synthase, or the production of its products.

Croteau, Rodney Bruce (Pullman, WA); Wildung, Mark Raymond (Colfax, WA); Lange, Bernd Markus (Pullman, WA); McCaskill, David G. (Pullman, WA)

2001-01-01T23:59:59.000Z

95

acid index database: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Summary: in as guestanon. Guests do not have full access to the database. Enter terms in the Search for: box and it will search all words that you enter. Searches are...

96

Nucleic acid isolation  

DOE Patents [OSTI]

A method is provided for isolating DNA from eukaryotic cell and flow sorted chromosomes. When DNA is removed from chromosome and cell structure, detergent and proteolytic digestion products remain with the DNA. These products can be removed with organic extraction, but the process steps associated with organic extraction reduces the size of DNA fragments available for experimental use. The present process removes the waste products by dialyzing a solution containing the DNA against a solution containing polyethylene glycol (PEG). The waste products dialyze into the PEG leaving isolated DNA. The remaining DNA has been prepared with fragments containing more than 160 kb. The isolated DNA has been used in conventional protocols without effect on the protocol.

Longmire, J.L.; Lewis, A.K.; Hildebrand, C.E.

1988-01-21T23:59:59.000Z

97

Nucleic acid isolation process  

DOE Patents [OSTI]

A method is provided for isolating DNA from eukaryotic cell and flow sorted chromosomes. When DNA is removed from chromosome and cell structure, detergent and proteolytic digestion products remain with the DNA. These products can be removed with organic extraction, but the process steps associated with organic extraction reduce the size of DNA fragments available for experimental use. The present process removes the waste products by dialyzing a solution containing the DNA against a solution containing polyethylene glycol (PEG). The waste products dialyze into the PEG leaving isolated DNA. The remaining DNA has been prepared with fragments containing more than 160 kb. The isolated DNA has been used in conventional protocols without affect on the protocol.

Longmire, Jonathan L. (Los Alamos, NM); Lewis, Annette K. (La Jolla, CA); Hildebrand, Carl E. (Los Alamos, NM)

1990-01-01T23:59:59.000Z

98

Nucleic acid biosensors  

DOE Patents [OSTI]

Sensors comprising aptazymes capable of detecting the presence and concentration of effectors, as well as methods of using such sensors, are disclosed.

Lu, Yi (Champaign, IL); Liu, Juewen (Urbana, IL)

2009-11-03T23:59:59.000Z

99

Synthesis, Improved Antisense Activity and Structural Rationale for the Divergent RNA Affinities of 3;#8242;-Fluoro Hexitol Nucleic Acid (FHNA and Ara-FHNA) Modified Oligonucleotides  

SciTech Connect (OSTI)

The synthesis, biophysical, structural, and biological properties of both isomers of 3'-fluoro hexitol nucleic acid (FHNA and Ara-FHNA) modified oligonucleotides are reported. Synthesis of the FHNA and Ara-FHNA thymine phosphoramidites was efficiently accomplished starting from known sugar precursors. Optimal RNA affinities were observed with a 3'-fluorine atom and nucleobase in a trans-diaxial orientation. The Ara-FHNA analog with an equatorial fluorine was found to be destabilizing. However, the magnitude of destabilization was sequence-dependent. Thus, the loss of stability is sharply reduced when Ara-FHNA residues were inserted at pyrimidine-purine (Py-Pu) steps compared to placement within a stretch of pyrimidines (Py-Py). Crystal structures of A-type DNA duplexes modified with either monomer provide a rationalization for the opposing stability effects and point to a steric origin of the destabilization caused by the Ara-FHNA analog. The sequence dependent effect can be explained by the formation of an internucleotide C-F {hor_ellipsis} H-C pseudo hydrogen bond between F3' of Ara-FHNA and C8-H of the nucleobase from the 3'-adjacent adenosine that is absent at Py-Py steps. In animal experiments, FHNA-modified antisense oligonucleotides formulated in saline showed a potent downregulation of gene expression in liver tissue without producing hepatotoxicity. Our data establish FHNA as a useful modification for antisense therapeutics and also confirm the stabilizing influence of F(Py) {hor_ellipsis} H-C(Pu) pseudo hydrogen bonds in nucleic acid structures.

Egli, Martin; Pallan, Pradeep S.; Allerson, Charles R.; Prakash, Thazha P.; Berdeja, Andres; Yu, Jinghua; Lee, Sam; Watt, Andrew; Gaus, Hans; Bhat, Balkrishen; Swayze, Eric E.; Seth, Punit P. (Isis Pharm.); (Vanderbilt)

2012-03-16T23:59:59.000Z

100

1998 Oxford University Press 7379Nucleic Acids Research, 1998, Vol. 26, No. 1 SGD: Saccharomyces Genome Database  

E-Print Network [OSTI]

, Erich T. Hester, Yankai Jia, Gail Juvik, TaiYun Roe, Mark Schroeder, Shuai Weng and David Botstein

Botstein, David

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


101

acid adenine dinucleotide: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Theoretical Determination of One-Electron Oxidation Potentials for Nucleic Acid Bases Brian T potentials for N-methyl substituted nucleic acid bases guanine, adenine, cytosine,...

102

Structural Rationalization of a Large Difference in RNA Affinity Despite a Small Difference in Chemistry between Two 2'-O-Modified Nucleic Acid Analogs  

SciTech Connect (OSTI)

Chemical modification of nucleic acids at the 2'-position of ribose has generated antisense oligonucleotides (AONs) with a range of desirable properties. Electron-withdrawing substituents such as 2'-O-[2-(methoxy)ethyl] (MOE) confer enhanced RNA affinity relative to that of DNA by conformationally preorganizing an AON for pairing with the RNA target and by improving backbone hydration. 2'-Substitution of the ribose has also been shown to increase nuclease resistance and cellular uptake via changes in lipophilicity. Interestingly, incorporation of either 2'-O-[2-(methylamino)-2-oxoethyl]- (NMA) or 2'-O-(N-methylcarbamate)-modified (NMC) residues into AONs has divergent effects on RNA affinity. Incorporation of 2'-O-NMA-T considerably improves RNA affinity while incorporation of 2'-O-NMC-T drastically reduces RNA affinity. Crystal structures at high resolution of A-form DNA duplexes containing either 2'-O-NMA-T or 2'-O-NMC-T shed light on the structural origins of the surprisingly large difference in stability given the relatively minor difference in chemistry between NMA and NMC. NMA substituents adopt an extended conformation and use either their carbonyl oxygen or amino nitrogen to trap water molecules between phosphate group and sugar. The conformational properties of NMA and the observed hydration patterns are reminiscent of those found in the structures of 2'-O-MOE-modified RNA. Conversely, the carbonyl oxygen of NMC and O2 of T are in close contact, providing evidence that an unfavorable electrostatic interaction and the absence of a stable water structure are the main reasons for the loss in thermodynamic stability as a result of incorporation of 2'-O-NMC-modified residues.

Pattanayek, R.; Sethaphong, L.; Pan, C.; Prhavc, M.; Prakash, T.P.; Manoharan, M.; Egli, M. (Tennessee); (Isis Pharmaceuticals Inc.); (Alnylam Pharmaceuticals,); (Vanderbilt)

2010-03-08T23:59:59.000Z

103

GOLD: The Genomes Online Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

Since its inception in 1997, GOLD has continuously monitored genome sequencing projects worldwide and has provided the community with a unique centralized resource that integrates diverse information related to Archaea, Bacteria, Eukaryotic and more recently Metagenomic sequencing projects. As of September 2007, GOLD recorded 639 completed genome projects. These projects have their complete sequence deposited into the public archival sequence databases such as GenBank EMBL,and DDBJ. From the total of 639 complete and published genome projects as of 9/2007, 527 were bacterial, 47 were archaeal and 65 were eukaryotic. In addition to the complete projects, there were 2158 ongoing sequencing projects. 1328 of those were bacterial, 59 archaeal and 771 eukaryotic projects. Two types of metadata are provided by GOLD: (i) project metadata and (ii) organism/environment metadata. GOLD CARD pages for every project are available from the link of every GOLD_STAMP ID. The information in every one of these pages is organized into three tables: (a) Organism information, (b) Genome project information and (c) External links. [The Genomes On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata, Konstantinos Liolios, Konstantinos Mavromatis, Nektarios Tavernarakis and Nikos C. Kyrpides, Nucleic Acids Research Advance Access published online on November 2, 2007, Nucleic Acids Research, doi:10.1093/nar/gkm884]

The basic tables in the GOLD database that can be browsed or searched include the following information:

  • Gold Stamp ID
  • Organism name
  • Domain
  • Links to information sources
  • Size and link to a map, when available
  • Chromosome number, Plas number, and GC content
  • A link for downloading the actual genome data
  • Institution that did the sequencing
  • Funding source
  • Database where information resides
  • Publication status and information

(Specialized Interface)

Kyrpides, Nikos; Liolios, Dinos; Chen, Amy; Tavernarakis, Nektarios; Hugenholtz, Philip; Markowitz, Victor; Bernal, Alex

104

Databases for rRNA gene profiling of microbial communities  

DOE Patents [OSTI]

The present invention relates to methods for performing surveys of the genetic diversity of a population. The invention also relates to methods for performing genetic analyses of a population. The invention further relates to methods for the creation of databases comprising the survey information and the databases created by these methods. The invention also relates to methods for analyzing the information to correlate the presence of nucleic acid markers with desired parameters in a sample. These methods have application in the fields of geochemical exploration, agriculture, bioremediation, environmental analysis, clinical microbiology, forensic science and medicine.

Ashby, Matthew

2013-07-02T23:59:59.000Z

105

Energy/structure database of all proteinogenic amino acids and dipeptides without and with divalent cations  

E-Print Network [OSTI]

We present a structural data set of the 20 proteinogenic amino acids and their amino-methylated and acetylated (capped) dipeptides. Different protonation states of the backbone (uncharged and zwitterionic) were considered for the amino acids as well as varied side chain protonation states. Furthermore, we studied amino acids and dipeptides in complex with divalent cations (Ca2+, Ba2+, Sr2+, Cd2+, Pb2+, and Hg2+). The database covers the conformational hierarchies of 280 systems in a wide relative energy range of up to 4 eV (390 kJ/mol), summing up to an overall of 45,892 stationary points on the respective potential-energy surfaces. All systems were calculated on equal first-principles footing, applying density-functional theory in the generalized gradient approximation corrected for long-range van der Waals interactions. We show good agreement to available experimental data for gas-phase ion affinities. Our curated data can be utilized, for example, for a wide comparison across chemical space of the building...

Ropo, Matti; Blum, Volker

2015-01-01T23:59:59.000Z

106

Geochemical Rate/RNA Integration Study (GRIST): A Pilot Field Experiment for Inter-Calibration of Biogeochemistry and Nucleic Acid Measurements Final Report  

SciTech Connect (OSTI)

The Geochemical Rate/RNA Integration Study (GRIST) project sought to correlate biogeochemical flux rates with measurements of gene expression and mRNA abundance to demonstrate the application of molecular approaches to estimate the presence and magnitude of a suite of biogeochemical processes. The study was headed by Lee Kerkhoff of Rutgers University. In this component of the GRIST study, we characterized ambient nutrient concentrations and measured uptake rates for dissolved inorganic nitrogen (DIN, ammonium, nitrate and nitrite) and dissolved organic nitrogen (urea and dissolved free amino acids) during two diel studies at the Long-Term Ecosystem Observatory (LEO-15) on the New Jersey continental shelf.

Bronk, Deborah

2007-01-08T23:59:59.000Z

107

Final Scientific/Technical Report, DE-FG02-06ER64171, Integrated Nucleic Acid System for In-Field Monitoring of Microbial Community Dynamics and Metabolic Activity – Subproject to Co-PI Eric E. Roden  

SciTech Connect (OSTI)

This report summarizes research conducted in conjunction with a project entitled “Integrated Nucleic Acid System for In-Field Monitoring of Microbial Community Dynamics and Metabolic Activity”, which was funded through the Integrative Studies Element of the former NABIR Program (now the Environmental Remediation Sciences Program) within the Office of Biological and Environmental Research. Dr. Darrell Chandler (originally at Argonne National Laboratory, now with Akonni Biosystems) was the overall PI/PD for the project. The overall project goals were to (1) apply a model iron-reducer and sulfate-reducer microarray and instrumentation systems to sediment and groundwater samples from the Scheibe et al. FRC Area 2 field site, UMTRA sediments, and other DOE contaminated sites; (2) continue development and expansion of a 16S rRNA/rDNA¬-targeted probe suite for microbial community dynamics as new sequences are obtained from DOE-relevant sites; and (3) address the fundamental molecular biology and analytical chemistry associated with the extraction, purification and analysis of functional genes and mRNA in environmental samples. Work on the UW subproject focused on conducting detailed batch and semicontinuous culture reactor experiments with uranium-contaminated FRC Area 2 sediment. The reactor experiments were designed to provide coherent geochemical and microbiological data in support of microarray analyses of microbial communities in Area 2 sediments undergoing biostimulation with ethanol. A total of four major experiments were conducted (one batch and three semicontinuous culture), three of which (the batch and two semicontinuous culture) provided samples for DNA microarray analysis. A variety of other molecular analyses (clone libraries, 16S PhyloChip, RT-PCR, and T-RFLP) were conducted on parallel samples from the various experiments in order to provide independent information on microbial community response to biostimulation.

Eric E. Roden

2009-07-08T23:59:59.000Z

108

Nucleic acids encoding a cellulose binding domain  

DOE Patents [OSTI]

A cellulose binding domain (CBD) having a high affinity for crystalline cellulose and chitin is disclosed, along with methods for the molecular cloning and recombinant production thereof. Fusion products comprising the CBD and a second protein are likewise described. A wide range of applications are contemplated for both the CBD and the fusion products, including drug delivery, affinity separations, and diagnostic techniques.

Shoseyov, Oded (Karmey Yosef, IL); Shpiegl, Itai (Rehovot, IL); Goldstein, Marc A. (Davis, CA); Doi, Roy H. (Davis, CA)

1996-01-01T23:59:59.000Z

109

Nucleic acids encoding a cellulose binding domain  

DOE Patents [OSTI]

A cellulose binding domain (CBD) having a high affinity for crystalline cellulose and chitin is disclosed, along with methods for the molecular cloning and recombinant production. Fusion products comprising the CBD and a second protein are likewise described. A wide range of applications are contemplated for both the CBD and the fusion products, including drug delivery, affinity separations, and diagnostic techniques. 15 figs.

Shoseyov, O.; Shpiegl, I.; Goldstein, M.A.; Doi, R.H.

1996-03-05T23:59:59.000Z

110

Ramon Eritja Nucleic Acid Chemistry Group  

E-Print Network [OSTI]

, IQAC-CSIC, CIBER-BBN DNA and RNA in Biophysics #12;DNA and RNA Synthesis tetrazol + (CH2)2(CH2)2 R R R

Ritort, Felix

111

Diagnostic method employing MSH2 nucleic acids  

DOE Patents [OSTI]

The human MSH2 gene, responsible for hereditary non-polyposis colorectal cancer, was identified by virtue of its homology to the MutS class of genes, which are involved in DNA mismatch repair. The sequence of cDNA clones of the human gene are provided, and the sequence of the gene can be used to demonstrate the existence of germ line mutations in hereditary non-polyposis colorectal cancer (HNPCC) kindreds, as well as in replication error.sup.+ (RER.sup.+) tumor cells.

de la Chapelle, Albert (Helsingfors, FI); Vogelstein, Bert (Baltimore, MD); Kinzler, Kenneth W. (Baltimore, MD)

1997-01-01T23:59:59.000Z

112

Diagnostic method employing MSH2 nucleic acids  

DOE Patents [OSTI]

The human MSH2 gene, responsible for hereditary non-polyposis colorectal cancer, was identified by virtue of its homology to the MutS class of genes, which are involved in DNA mismatch repair. The sequence of cDNA clones of the human gene are provided, and the sequence of the gene can be used to demonstrate the existence of germ line mutations in hereditary non-polyposis colorectal cancer (HNPCC) kindreds, as well as in replication error{sup +}(RER{sup +}) tumor cells. 19 figs.

Chapelle, A. de la; Vogelstein, B.; Kinzler, K.W.

1997-12-02T23:59:59.000Z

113

Fatty acid-producing hosts  

DOE Patents [OSTI]

Described are hosts for overproducing a fatty acid product such as a fatty acid. The hosts include an exogenous nucleic acid encoding a thioesterase and, optionally, an exogenous nucleic acid encoding an acetyl-CoA carboxylase, wherein an acyl-CoA synthetase in the hosts are functionally delected. The hosts prefereably include the nucleic acid encoding the thioesterase at an intermediate copy number. The hosts are preferably recominantly stable and growth-competent at 37.degree. C. Methods of producing a fatty acid product comprising culturing such hosts at 37.degree. C. are also described.

Pfleger, Brian F; Lennen, Rebecca M

2013-12-31T23:59:59.000Z

114

E-Print Network 3.0 - acids amino acids Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

State University Collection: Biology and Medicine 77 CHE 427627 THE ORGANIC CHEMISTRY OF BIOLOGICAL MOLECULES Summary: macromolecules: carbohydrates, amino acids, nucleic...

115

E-Print Network 3.0 - acid amino acid Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

State University Collection: Biology and Medicine 77 CHE 427627 THE ORGANIC CHEMISTRY OF BIOLOGICAL MOLECULES Summary: macromolecules: carbohydrates, amino acids, nucleic...

116

E-Print Network 3.0 - anthranilic acid derivatives Sample Search...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

This acid has been used... -specific nucleic acid ligands via affinity ... Source: Beal, Peter A. - Department of Chemistry, University of Utah Collection: Chemistry 26 Direct...

117

MvirDB: Microbial Database of Protein Toxins, Virulence Factors and Antibiotic Resistance Genes for Bio-Defense Applications  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

MvirDB is a cenntralized resource (data warehouse) comprising all publicly accessible, organized sequence data for protein toxins, virulence factors, and antibiotic resistance genes. Protein entries in MvirDB are annotated using a high-throughput, fully automated computational annotation system; annotations are updated periodically to ensure that results are derived using current public database and open-source tool releases. Tools provided for using MvirDB include a web-based browser tool and BLAST interfaces. MvirDB serves researchers in the bio-defense and medical fields. (taken from page 3 of PI's paper of same title published in Nucleic Acids Research, 2007, Vol.35, Database Issue (Open Source)

Zhou, C. E.; Smith, J.; Lam, M.; Zemla, M. D.; Slezak, T.

118

acids structures applied: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Treatment of software French, James C. 5 Parsing nucleic acid pseudoknotted secondary structure: algorithm and applications Computer Technologies and Information Sciences...

119

acid biosensor based: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

biosensors of nucleic acids and proteins for point- of-care (POC. The merger of microfluidics and advanced biosensor technolo- gies offers new promises for POC diagnostics...

120

E-Print Network 3.0 - acid chelate derivatives Sample Search...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Ca21 and Mg21 by phosphates and nucleic acids. We describe coordination chemistry Source: Williams, Loren - School of Chemistry and Biochemistry, Georgia Institute of Technology...

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


121

E-Print Network 3.0 - acid hybridization probes Sample Search...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

tion to hybridization and wash... or the extent to which nucleic acid ... Source: Kelly, John J. - Department of Biology, Loyola University Chicago Collection: Environmental...

122

E-Print Network 3.0 - acid regulates gene Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

DNA binding domain or partner domain type Summary: of the Bipartite response regulator FIS-like Nucleic acid-binding proteins Distribution of DBDs in the TF... R + + + + + ...

123

E-Print Network 3.0 - acid negatively regulates Sample Search...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

DNA binding domain or partner domain type Summary: of the Bipartite response regulator FIS-like Nucleic acid-binding proteins Distribution of DBDs in the TF... R + + + + + ...

124

E-Print Network 3.0 - acid catabolic pathway Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

metabolism of nutrients1 Summary: , and cell cultures to investigate the interconnectivity of the pathways of macronutrient and nucleic acid... -labeled car- bon skeletons...

125

Plant fatty acid hydroxylase  

DOE Patents [OSTI]

The present invention relates to the identification of nucleic acid sequences and constructs, and methods related thereto, and the use of these sequences and constructs to produce genetically modified plants for the purpose of altering the composition of plant oils, waxes and related compounds.

Somerville, Chris (Portola Valley, CA); van de Loo, Frank (Lexington, KY)

2000-01-01T23:59:59.000Z

126

Thermal and acid tolerant beta-xylosidases, genes encoding, related organisms, and methods  

DOE Patents [OSTI]

Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius and variations thereof are provided. Further provided are methods of at least partially degrading xylotriose and/or xylobiose using isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius and variations thereof.

Thompson, David N. (Idaho Falls, ID); Thompson, Vicki S. (Idaho Falls, ID); Schaller, Kastli D. (Ammon, ID); Apel, William A. (Jackson, WY); Lacey, Jeffrey A. (Idaho Falls, ID); Reed, David W. (Idaho Falls, ID)

2011-04-12T23:59:59.000Z

127

Thermal and acid tolerant beta xylosidases, arabinofuranosidases, genes encoding, related organisms, and methods  

DOE Patents [OSTI]

Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius and variations thereof are provided. Further provided are methods of at least partially degrading xylotriose, xylobiose, and/or arabinofuranose-substituted xylan using isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius and variations thereof.

Thompson, David N; Thompson, Vicki S; Schaller, Kastli D; Apel, William A; Reed, David W; Lacey, Jeffrey A

2013-04-30T23:59:59.000Z

128

Introduction to Database Database Systems Lecture 1  

E-Print Network [OSTI]

Introduction to Database Systems Database Systems Lecture 1 Natasha Alechina www.cs.nott.ac.uk/~nza/G51DBS #12;In this Lecture · Course Information · Databases and Database Systems · Some History questions · Format similar to previous years. #12;Textbook · Recommended textbooks: · `Database Systems

Alechina, Natasha

129

Targeting unique nucleic acid structures with small molecules  

E-Print Network [OSTI]

2 min and then flash cooling on ice for 2 min. Incubated atfor 2 min then flash cooling on ice for 2 min. The extendedminutes, followed by flash cooling on ice for 2 minutes. The

Tam, Victor Kin-man

2007-01-01T23:59:59.000Z

130

Targeting unique nucleic acid structures with small molecules  

E-Print Network [OSTI]

of mono- and disubstitued anthraquinone derivatives with anat opposite ends of the anthraquinone scaffold are employed.

Tam, Victor Kin-man

2007-01-01T23:59:59.000Z

131

E-Print Network 3.0 - acid pdb entries Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

, nucleic acids, and other biological macro- molecules 1-3. The PDB has a 27-year history of service... entries include amino acid or nucle- ... Source: Sussman, Joel L. -...

132

E-Print Network 3.0 - acid utilization final Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

active with 18:1. In plants containing... nucleic acids were resuspended in water. Lithium chloride was then added to a final concentration of 2 m... Fatty Acids1 Hangsik Moon2...

133

NUCLEAR STRUCTURE DATABASE  

E-Print Network [OSTI]

CALIFORNIA NUCLEAR STRUCTURE DATABASE R. B. Firestone and E.11089 NUCLEAR STRUCTURE DATABASE by R.B. Firestone and E.iii- NUCLEAR STRUCTURE DATABASE R.B Firestone and E. Browne

Firestone, R.B.

2010-01-01T23:59:59.000Z

134

Producing dicarboxylic acids using polyketide synthases  

DOE Patents [OSTI]

The present invention provides for a polyketide synthase (PKS) capable of synthesizing a dicarboxylic acid (diacid). Such diacids include diketide-diacids and triketide-diacids. The invention includes recombinant nucleic acid encoding the PKS, and host cells comprising the PKS. The invention also includes methods for producing the diacids.

Katz, Leonard; Fortman, Jeffrey L; Keasling, Jay D

2013-10-29T23:59:59.000Z

135

Database Management Certificate Program  

E-Print Network [OSTI]

Database Management Certificate Program DATABASE TECHNOLOGIES 13 Today, organizations in every to obtain general data analysis and management skills or apply both Oracle and Microsoft SQL Server database capabilities of relational databases in conjunction with the new "Big Data" management frameworks for data

Rose, Michael R.

136

The EMIME Bilingual Database   

E-Print Network [OSTI]

This paper describes the collection of a bilingual database of Finnish/English and German/English data. In addition, the accents of the talkers in the database have been rated. English, German and Finnish listeners assessed the English, German...

Wester, Mirjam

2010-01-01T23:59:59.000Z

137

Hazard Analysis Database report  

SciTech Connect (OSTI)

This document describes and defines the Hazard Analysis Database for the Tank Waste Remediation System Final Safety Analysis Report.

Niemi, B.J.

1997-08-12T23:59:59.000Z

138

ORACLE CERTIFICATION Oracle Database  

E-Print Network [OSTI]

ORACLE CERTIFICATION Oracle Database Administration Certificate Program Train with the best. Get your Oracle Database Administration education from the number-one provider* of Oracle training-on, lab-based understanding of Oracle, the world's leading database platform, and long the product

Loudon, Catherine

139

Database Encryption Luc Bouganim  

E-Print Network [OSTI]

Database Encryption Luc Bouganim INRIA Rocquencourt Le Chesnay, FRANCE Luc.Bouganim@inria.fr Yanli GUO INRIA Rocquencourt Le Chesnay, FRANCE yanli.guo@inria.fr Related concepts and keywords Database security, Data confidentiality, Hardware Security Module Definition Database encryption refers to the use

Paris-Sud XI, Université de

140

Database Description with SDM: A Semantic Database Model  

E-Print Network [OSTI]

Database Description with SDM: A Semantic Database Model MICHAEL HAMMER Massachusetts Institute of Technology and DENNIS McLEOD University of Southern California SDM is a high-level semantics-based database description and structuring formalism (database model) for databases. This database model is designed

McLeod, Dennis

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


141

Database tool ASGARD: an open-access database of  

E-Print Network [OSTI]

Database tool ASGARD: an open-access database of annotated transcriptomes for emerging model database, the Assembled Searchable Giant Arthropod Read Database (ASGARD). This database is a repository include search term auto-completion sug- gestions based on database content, the ability to download

Extavour, Cassandra

142

Testing Database-Centric Applications For Causes of Database Deadlocks  

E-Print Network [OSTI]

Testing Database-Centric Applications For Causes of Database Deadlocks Mark Grechanik, B. M. Mainul--Many organizations deploy applications that use databases by sending Structured Query Language (SQL) state- ments the same databases concurrently, database deadlocks routinely occur in these databases. Testing

Grechanik, Mark

143

2010 Worldwide Gasification Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The 2010 Worldwide Gasification Database describes the current world gasification industry and identifies near-term planned capacity additions. The database lists gasification projects and includes information (e.g., plant location, number and type of gasifiers, syngas capacity, feedstock, and products). The database reveals that the worldwide gasification capacity has continued to grow for the past several decades and is now at 70,817 megawatts thermal (MWth) of syngas output at 144 operating plants with a total of 412 gasifiers.

144

DIP: The Database of Interacting Proteins  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The DIP Database catalogs experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions. By interaction, the DIP Database creators mean that two amino acid chains were experimentally identified to bind to each other. The database lists such pairs to aid those studying a particular protein-protein interaction but also those investigating entire regulatory and signaling pathways as well as those studying the organisation and complexity of the protein interaction network at the cellular level. The data stored within the DIP database were curated, both, manually by expert curators and also automatically using computational approaches that utilize the knowledge about the protein-protein interaction networks extracted from the most reliable, core subset of the DIP data. It is a relational database that can be searched by protein, sequence, motif, article information, and pathBLAST. The website also serves as an access point to a number of projects related to DIP, such as LiveDIP, The Database of Ligand-Receptor Partners (DLRP) and JDIP. Users have free and open access to DIP after login. [Taken from the DIP Guide and the DIP website] (Specialized Interface) (Registration Required)

145

Hazard Analysis Database Report  

SciTech Connect (OSTI)

The Hazard Analysis Database was developed in conjunction with the hazard analysis activities conducted in accordance with DOE-STD-3009-94, Preparation Guide for U S . Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports, for HNF-SD-WM-SAR-067, Tank Farms Final Safety Analysis Report (FSAR). The FSAR is part of the approved Authorization Basis (AB) for the River Protection Project (RPP). This document describes, identifies, and defines the contents and structure of the Tank Farms FSAR Hazard Analysis Database and documents the configuration control changes made to the database. The Hazard Analysis Database contains the collection of information generated during the initial hazard evaluations and the subsequent hazard and accident analysis activities. The Hazard Analysis Database supports the preparation of Chapters 3 ,4 , and 5 of the Tank Farms FSAR and the Unreviewed Safety Question (USQ) process and consists of two major, interrelated data sets: (1) Hazard Analysis Database: Data from the results of the hazard evaluations, and (2) Hazard Topography Database: Data from the system familiarization and hazard identification.

GRAMS, W.H.

2000-12-28T23:59:59.000Z

146

PATENTS OFFICE REGISTER DATABASE SEARCH  

E-Print Network [OSTI]

PATENTS OFFICE REGISTER & DATABASE SEARCH . Database Home PATENT REGISTER Status: Lapsed Grant No VERMEER MANUFACTURING COMPANY 2411 Highway 102 Pella, IA 50219 UNITED STATES OF AMERICA Address

Kansas, University of

147

Nuclear Science References Database  

E-Print Network [OSTI]

The Nuclear Science References (NSR) database together with its associated Web interface, is the world's only comprehensive source of easily accessible low- and intermediate-energy nuclear physics bibliographic information for more than 210,000 articles since the beginning of nuclear science. The weekly-updated NSR database provides essential support for nuclear data evaluation, compilation and research activities. The principles of the database and Web application development and maintenance are described. Examples of nuclear structure, reaction and decay applications are specifically included. The complete NSR database is freely available at the websites of the National Nuclear Data Center http://www.nndc.bnl.gov/nsr and the International Atomic Energy Agency http://www-nds.iaea.org/nsr.

B. Pritychenko; E. B?ták; B. Singh; J. Totans

2014-07-08T23:59:59.000Z

148

USER'S GUIDE DATABASE SYSTEM  

E-Print Network [OSTI]

server and runs on the PPPL VAX cluster under VMS. The MINGL database system for TFTR is composed on the VAX. This document describes the overall system in terms of how the various parts interact

149

ARTI Refrigerant Database  

SciTech Connect (OSTI)

The Refrigerant Database consolidates and facilitates access to information to assist industry in developing equipment using alternative refrigerants. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern.

Calm, J.M. [Calm (James M.), Great Falls, VA (United States)

1994-05-27T23:59:59.000Z

150

Using IMG: Comparative Analysis with the Integrated Microbial Genomes System  

E-Print Network [OSTI]

for genome annotation: PRIAM. Nucleic Acids Research 31 (RPS-BLAST against the PRIAM database (12), as a complementBLAST computations. Computation COG PRIAM Tool Low- Maximum

2008-01-01T23:59:59.000Z

151

Crude Oil Analysis Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The composition and physical properties of crude oil vary widely from one reservoir to another within an oil field, as well as from one field or region to another. Although all oils consist of hydrocarbons and their derivatives, the proportions of various types of compounds differ greatly. This makes some oils more suitable than others for specific refining processes and uses. To take advantage of this diversity, one needs access to information in a large database of crude oil analyses. The Crude Oil Analysis Database (COADB) currently satisfies this need by offering 9,056 crude oil analyses. Of these, 8,500 are United States domestic oils. The database contains results of analysis of the general properties and chemical composition, as well as the field, formation, and geographic location of the crude oil sample. [Taken from the Introduction to COAMDATA_DESC.pdf, part of the zipped software and database file at http://www.netl.doe.gov/technologies/oil-gas/Software/database.html] Save the zipped file to your PC. When opened, it will contain PDF documents and a large Excel spreadsheet. It will also contain the database in Microsoft Access 2002.

Shay, Johanna Y.

152

The GLIMS Glacier Database: a spatio-temporal database  

E-Print Network [OSTI]

The GLIMS Glacier Database: a spatio-temporal database implemented using Open Source tools Bruce countries #12;#12;#12;#12;#12;System components PostgreSQL (relational database) PostGIS (geospatial) GDAL (Geospatial Data Abstraction Library) Perl, PHP, Shapelib, ... #12;GLIMS Glacier Database System

Raup, Bruce H.

153

Database Sampling with Functional Dependencies  

E-Print Network [OSTI]

Database Sampling with Functional Dependencies Jes´us Bisbal, Jane Grimson Department of Computer there is a need to prototype the database which the applications will use when in operation. A prototype database can be built by sampling data from an existing database. Including relevant semantic information when

Riera, Jesús Bisbal

154

National Ambient Radiation Database  

SciTech Connect (OSTI)

The U.S. Environmental Protection Agency (EPA) recently developed a searchable database and website for the Environmental Radiation Ambient Monitoring System (ERAMS) data. This site contains nationwide radiation monitoring data for air particulates, precipitation, drinking water, surface water and pasteurized milk. This site provides location-specific as well as national information on environmental radioactivity across several media. It provides high quality data for assessing public exposure and environmental impacts resulting from nuclear emergencies and provides baseline data during routine conditions. The database and website are accessible at www.epa.gov/enviro/. This site contains (1) a query for the general public which is easy to use--limits the amount of information provided, but includes the ability to graph the data with risk benchmarks and (2) a query for a more technical user which allows access to all of the data in the database, (3) background information on ER AMS.

Dziuban, J.; Sears, R.

2003-02-25T23:59:59.000Z

155

ARTI Refrigerant Database  

SciTech Connect (OSTI)

The Refrigerant Database consolidates and facilitates access to information to assist industry in developing equipment using alternative refrigerants. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern. The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air- conditioning and refrigeration equipment. The complete documents are not included, though some may be added at a later date. The database identifies sources of specific information on R-32, R-123, R-124, R- 125, R-134a, R-141b, R142b, R-143a, R-152a, R-290 (propane), R-717 (ammonia), ethers, and others as well as azeotropic and zeotropic blends of these fluids. It addresses polyalkylene glycol (PAG), ester, and other lubricants. It also references documents addressing compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits.

Calm, J.M.

1992-04-30T23:59:59.000Z

156

Relational Database SQL: Querying the Relational DB  

E-Print Network [OSTI]

: auto-completion and command history Weigang Qiu Relational Database & SQL #12;Relational Database SQLRelational Database SQL: Querying the Relational DB Workshop: the "genome" Database Relational Database & SQL Weigang Qiu Department of Biological Sciences Hunter College BIOL 425 Computational

Qiu, Weigang

157

acid amplification test: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

amplification test First Page Previous Page 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 Next Page Last Page Topic Index 1 Diagnostic Accuracy of Nucleic Acid...

158

Beta-alanine/alpha-ketoglutarate aminotransferase for 3-hydroxypropionic acid production  

DOE Patents [OSTI]

The present disclosure provides novel beta-alanine/alpha ketoglutarate aminotransferase nucleic acid and protein sequences having increased biological activity. Also provided are cells containing such enzymes, as well as methods of their use, for example to produce malonyl semialdehyde and downstream products thereof, such as 3-hydroxypropionic acid and derivatives thereof.

Jessen, Holly Jean (Chanhassen, MN); Liao, Hans H. (Eden Prairie, MN); Gort, Steven John (Apple Valley, MN); Selifonova, Olga V. (Plymouth, MN)

2011-10-04T23:59:59.000Z

159

Beta-alanine/alpha-ketoglutarate aminotransferase for 3-hydroxypropionic acid production  

SciTech Connect (OSTI)

The present disclosure provides novel beta-alanine/alpha ketoglutarate aminotransferase nucleic acid and protein sequences having increased biological activity. Also provided are cells containing such enzymes, as well as methods of their use, for example to produce malonyl semialdehyde and downstream products thereof, such as 3-hydroxypropionic acid and derivatives thereof.

Jessen, Holly Jean; Liao, Hans H; Gort, Steven John; Selifonova, Olga V

2014-11-18T23:59:59.000Z

160

AN OVERVIEW ON DATABASESAN OVERVIEW ON DATABASES What is a Database?What is a Database?  

E-Print Network [OSTI]

3/22/2011 1 1 AN OVERVIEW ON DATABASESAN OVERVIEW ON DATABASES C. Schweik 2 What is a Database?What is a Database? A well organized collection of data that are related in a meaningful way. Data can be accessed, structured and shared. #12;3/22/2011 2 3 Data in Database SystemsData in Database Systems should be:should be

Schweik, Charles M.

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


161

Database Security: A Historical Perspective  

E-Print Network [OSTI]

The importance of security in database research has greatly increased over the years as most of critical functionality of the business and military enterprises became digitized. Database is an integral part of any information system and they often hold sensitive data. The security of the data depends on physical security, OS security and DBMS security. Database security can be compromised by obtaining sensitive data, changing data or degrading availability of the database. Over the last 30 years the information technology environment have gone through many changes of evolution and the database research community have tried to stay a step ahead of the upcoming threats to the database security. The database research community has thoughts about these issues long before they were address by the implementations. This paper will examine the different topics pertaining to database security and see the adaption of the research to the changing environment. Some short term database research trends will be ascertained ...

Lesov, Paul

2010-01-01T23:59:59.000Z

162

The CEBAF Element Database  

SciTech Connect (OSTI)

With the inauguration of the CEBAF Element Database (CED) in Fall 2010, Jefferson Lab computer scientists have taken a step toward the eventual goal of a model-driven accelerator. Once fully populated, the database will be the primary repository of information used for everything from generating lattice decks to booting control computers to building controls screens. A requirement influencing the CED design is that it provide access to not only present, but also future and past configurations of the accelerator. To accomplish this, an introspective database schema was designed that allows new elements, types, and properties to be defined on-the-fly with no changes to table structure. Used in conjunction with Oracle Workspace Manager, it allows users to query data from any time in the database history with the same tools used to query the present configuration. Users can also check-out workspaces to use as staging areas for upcoming machine configurations. All Access to the CED is through a well-documented Application Programming Interface (API) that is translated automatically from original C++ source code into native libraries for scripting languages such as perl, php, and TCL making access to the CED easy and ubiquitous.

Theodore Larrieu, Christopher Slominski, Michele Joyce

2011-03-01T23:59:59.000Z

163

DATABASE SECURITY APPLICATIONS  

E-Print Network [OSTI]

DATABASE SECURITY #12;APPLICATIONS #12;Polyinstantiation for Cover Stories Ravi S. Sandhu and Sushil Jajodia* Center for Secure Information Systems & Department of Information and Software Systems Engineering George Mason University Falffax, VA 22030, USA emaih {sandhu, jajodia}Qsitevax.gmu.edu Abstract

Sandhu, Ravi

164

Science & Engineering Engineering Databases  

E-Print Network [OSTI]

-present. Good for computers, electronics, biomedical, control, electrical and ocean engineering, physics9/09 DK,DS Science & Engineering Library Engineering Databases How to search the engineering initials Special features: Limit to peer-reviewed journals Compendex [Engineering Index] 1884-present

Hampton, Randy

165

High Performance Buildings Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The High Performance Buildings Database is a shared resource for the building industry, a unique central repository of in-depth information and data on high-performance, green building projects across the United States and abroad. The database includes information on the energy use, environmental performance, design process, finances, and other aspects of each project. Members of the design and construction teams are listed, as are sources for additional information. In total, up to twelve screens of detailed information are provided for each project profile. Projects range in size from small single-family homes or tenant fit-outs within buildings to large commercial and institutional buildings and even entire campuses. The database is a data repository as well. A series of Web-based data-entry templates allows anyone to enter information about a building project into the database. Once a project has been submitted, each of the partner organizations can review the entry and choose whether or not to publish that particular project on its own Web site.

166

March 24, 2008 Databases: Security 1 Database Security and Authorization  

E-Print Network [OSTI]

to control login process by the DBMS Inference control The countermeasures to statistical database security database #12;March 24, 2008 Databases: Security 3 Chapter Outline Introduction Access Control Methods Policy System-related Security levels and categories Security Threats Loss of integrity Loss

Adam, Salah

167

The EMIME Mandarin Bilingual Database   

E-Print Network [OSTI]

This paper describes the collection of a bilingual database of Mandarin/English data. In addition, the accents of the talkers in the database have been rated. English and Mandarin listeners assessed the English and Mandarin talkers' degree...

Wester, Mirjam; Liang, Hui

2011-01-01T23:59:59.000Z

168

A Case for Database Filesystems  

SciTech Connect (OSTI)

Data intensive science is offering new challenges and opportunities for Information Technology and traditional relational databases in particular. Database filesystems offer the potential to store Level Zero data and analyze Level 1 and Level 3 data within the same database system [2]. Scientific data is typically composed of both unstructured files and scalar data. Oracle SecureFiles is a new database filesystem feature in Oracle Database 11g that is specifically engineered to deliver high performance and scalability for storing unstructured or file data inside the Oracle database. SecureFiles presents the best of both the filesystem and the database worlds for unstructured content. Data stored inside SecureFiles can be queried or written at performance levels comparable to that of traditional filesystems while retaining the advantages of the Oracle database.

Adams, P A; Hax, J C

2009-05-13T23:59:59.000Z

169

ARTI Refrigerant Database  

SciTech Connect (OSTI)

The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air- conditioning and refrigeration equipment. The database identifies sources of specific information on R-32, R-123, R-124, R-125, R-134, R-134a, R-141b, R-142b, R-143a, R-152a, R-245ca, R-290 (propane), R- 717 (ammonia), ethers, and others as well as azeotropic and zeotropic and zeotropic blends of these fluids. It addresses lubricants including alkylbenzene, polyalkylene glycol, ester, and other synthetics as well as mineral oils. It also references documents on compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits. A computerized version is available that includes retrieval software.

Calm, J.M.

1992-11-09T23:59:59.000Z

170

ARTI refrigerant database  

SciTech Connect (OSTI)

The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilitates access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern.

Calm, J.M.

1996-11-15T23:59:59.000Z

171

ARTI refrigerant database  

SciTech Connect (OSTI)

The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilities access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern.

Calm, J.M. [Calm (James M.), Great Falls, VA (United States)

1999-01-01T23:59:59.000Z

172

ARTI refrigerant database  

SciTech Connect (OSTI)

The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilitates access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern.

Calm, J.M.

1996-07-01T23:59:59.000Z

173

A Noisy 10GB Provenance Database  

E-Print Network [OSTI]

Workload The provenance database is generated from theperformance of the provenance database generation process tox-axis). Figure 4 shows the database being populated with

Cheah, You-Wei

2013-01-01T23:59:59.000Z

174

DATABASE FOR PREMATURE CONCRETE DETERIORATION  

E-Print Network [OSTI]

0-4085-P3 DATABASE FOR PREMATURE CONCRETE DETERIORATION Author: Kevin J. Folliard Project 0. This product presents the architecture for a database to collect relevant information on materials and mixture in developing and populating various materials- and structures-specific databases for both new concrete

Texas at Austin, University of

175

Mathematics Database ZMATH MSC 2000  

E-Print Network [OSTI]

Reviewer Service Subscription »ZMATH« ZMATH Database | Advanced Search Print ZMATH Database Simple Search Advanced Search Command Search Advanced Search Query: an:0852.4600 Fill in the form and click »SearchLanguage: English Search: ZMATH Contact World of Mathematics Database »ZMATH« MSC 2000 MSC 2010

Kutateladze, Semen Samsonovich

176

ARTI refrigerant database  

SciTech Connect (OSTI)

The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilitates access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufactures and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern. The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air-conditioning and refrigeration equipment. The complete documents are not included, though some may be added at a later date. The database identifies sources of specific information on many refrigerants including propane, ammonia, water, carbon dioxide, propylene, ethers, and others as well as azeotropic and zeotropic blends of these fluids. It addresses lubricants including alkylbenzene, polyalkylene glycol, polyolester, and other synthetics as well as mineral oils. It also references documents addressing compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits. Incomplete citations or abstracts are provided for some documents. They are included to accelerate availability of the information and will be completed or replaced in future updates.

Calm, J.M. [Calm (James M.), Great Falls, VA (United States)

1998-08-01T23:59:59.000Z

177

ARTI Refrigerant Database  

SciTech Connect (OSTI)

The Refrigerant Database consolidates and facilitates access to information to assist industry in developing equipment using alternative refrigerants. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern. The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air-conditioning and refrigeration equipment. The complete documents are not included. The database identifies sources of specific information on R-32, R-123, R-124, R-125, R-134, R-134a, R-141b, R-142b, R-143a, R-152a, R-245ca, R-290 (propane), R-717 (ammonia), ethers, and others as well as azeotropic and zeotropic blends of these fluids. It addresses lubricants including alkylbenzene, polyalkylene glycol, ester, and other synthetics as well as mineral oils. It also references documents addressing compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits. Incomplete citations or abstracts are provided for some documents to accelerate availability of the information and will be completed or replaced in future updates.

Cain, J.M. (Calm (James M.), Great Falls, VA (United States))

1993-04-30T23:59:59.000Z

178

ARTI refrigerant database  

SciTech Connect (OSTI)

The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilitates access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern. The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air-conditioning and refrigeration equipment. The complete documents are not included, though some may be added at a later date. The database identifies sources of specific information on refrigerants. It addresses lubricants including alkylbenzene, polyalkylene glycol, polyolester, and other synthetics as well as mineral oils. It also references documents addressing compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits. Incomplete citations or abstracts are provided for some documents. They are included to accelerate availability of the information and will be completed or replaced in future updates. Citations in this report are divided into the following topics: thermophysical properties; materials compatibility; lubricants and tribology; application data; safety; test and analysis methods; impacts; regulatory actions; substitute refrigerants; identification; absorption and adsorption; research programs; and miscellaneous documents. Information is also presented on ordering instructions for the computerized version.

Calm, J.M. [Calm (James M.), Great Falls, VA (United States)] [Calm (James M.), Great Falls, VA (United States)

1996-04-15T23:59:59.000Z

179

ARTI refrigerant database  

SciTech Connect (OSTI)

The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilitates access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alterative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern. The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air-conditioning and refrigeration equipment. The complete documents are not included, though some may be added at a later date. The database identifies sources of specific information on various refrigerants. It addresses lubricants including alkylbenzene, polyalkylene glycol, polyolester, and other synthetics as well as mineral oils. It also references documents addressing compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits. Incomplete citations or abstracts are provided for some documents. They are included to accelerate availability of the information and will be completed or replaced in future updates.

Calm, J.M.

1997-02-01T23:59:59.000Z

180

DAPS: Database of Aligned Protein Structures  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

How is DAPS constructed? We begin with the set of all chains from the current release of the PDB. An all on all search is done on the list to find pairs that have the same fold acoording to both the FSSP and CATH databases and clustered into groups by a representative structure (representative structures have less than 25% sequence identity to each other). For each protein pair, regions aligned by the DALI program are extracted from the corresponding FSSP file, or recomputed using DALI-lite. In domain DAPS, only regions that are called "domains" by CATH are included in the alignment. The amino acid type, secondary structure type, and solvent accessibility are extracted from the DSSP file and written pairwise into the database. DAPS is updated with updates of CATH.[Taken from http://nihserver.mbi.ucla.edu/DAPS/daps_help.html

Mallick, Parag; Rice, Danny; Eisenberg, David

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


181

Databases | Department of Energy  

Office of Environmental Management (EM)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE:1 First Use of Energy for All Purposes (Fuel and Nonfuel),Feet) Year Jan Feb Mar Apr May Jun Jul(Summary) " ,"ClickPipelinesProvedDecember 2005Department ofDOE AccidentWaste IsolationDashboards DashboardsDatabases

182

Pathogen Research Databases  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE:1 First Use of Energy for All Purposes (Fuel and Nonfuel),Feet) Year Jan Feb Mar Apr May Jun Jul(Summary)morphinanInformation Desert Southwest RegionatSearch Welcome to the PacificCollaboration » Pathogen Databases

183

ARM Publications Database  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE:1 First Use of Energy for All Purposes (Fuel and Nonfuel),Feet) Year Jan Feb Mar Apr May JunDatastreamsmmcrcalgovInstrumentsruc Documentation RUCProductstwrmrAre the Effects of Global Warming?8 Apr 2015DatabaseSearchTips

184

Webinar: Hydrogen Storage Materials Database Demonstration |...  

Broader source: Energy.gov (indexed) [DOE]

Storage Materials Database Demonstration Webinar: Hydrogen Storage Materials Database Demonstration Presentation slides from the Fuel Cell Technologies Office webinar "Hydrogen...

185

National Residential Efficiency Measures Database Webinar Slides...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

National Residential Efficiency Measures Database Webinar Slides National Residential Efficiency Measures Database Webinar Slides Presentation slides for the Building Technologies...

186

Database Manipulation on Quantum Computers  

E-Print Network [OSTI]

Manipulating a database system on a quantum computer is an essential aim to benefit from the promising speed-up of quantum computers over classical computers in areas that take a vast amount of storage and processing time such as in databases. In this paper, the basic operations for manipulating the data in a quantum database will be defined, e.g. INSERT, UPDATE, DELETE, SELECT, backing up and restoring a database file. This gives the ability to perform the data processing that usually takes a long processing time on a classical database system, in a simultaneous way on a quantum computer. Defining a quantum version of more advanced concepts used in database systems, e.g. the referential integrity and the relational algebra, is a normal extension to this work

Ahmed Younes

2007-05-29T23:59:59.000Z

187

Xylanases, nucleic acids encoding them and methods for making and using them  

DOE Patents [OSTI]

The invention relates to enzymes having xylanase, mannanase and/or glucanase activity, e.g., catalyzing hydrolysis of internal .beta.-1,4-xylosidic linkages or endo-.beta.-1,4-glucanase linkages; and/or degrading a linear polysaccharide beta-1,4-xylan into xylose. Thus, the invention provides methods and processes for breaking down hemicellulose, which is a major component of the cell wall of plants, including methods and processes for hydrolyzing hemicelluloses in any plant or wood or wood product, wood waste, paper pulp, paper product or paper waste or byproduct. In addition, methods of designing new xylanases, mannanases and/or glucanases and methods of use thereof are also provided. The xylanases, mannanases and/or glucanases have increased activity and stability at increased pH and temperature.

Gray, Kevin A; Dirmeier, Reinhard

2013-07-16T23:59:59.000Z

188

BGL7 beta-glucosidase and nucleic acids encoding the same  

DOE Patents [OSTI]

The present invention provides BGL7 polypeptides with the biological activity of a .beta.-glucosidase and a method of producing a recombinant enzyme having .beta.-glucosidase activity.

Dunn-Coleman, Nigel (Los Gatos, CA); Ward, Michael (San Francisco, CA)

2012-03-13T23:59:59.000Z

189

Nucleic acid encoding a self-assembling split-fluorescent protein system  

DOE Patents [OSTI]

The invention provides a protein labeling and detection system based on self-complementing fragments of fluorescent and chromophoric proteins. The system of the invention is exemplified with various combinations of self-complementing fragments derived from Aequorea victoria Green Fluorescent Protein (GFP), which are used to detect and quantify protein solubility in multiple assay formats, both in vitro and in vivo.

Waldo, Geoffrey S. (Santa Fe, NM); Cabantous, Stephanie (Los Alamos, NM)

2011-06-07T23:59:59.000Z

190

Nucleic acid encoding a self-assembling split-fluorescent protein system  

DOE Patents [OSTI]

The invention provides a protein labeling and detection system based on self-complementing fragments of fluorescent and chromophoric proteins. The system of the invention is exemplified with various combinations of self-complementing fragments derived from Aequorea victoria Green Fluorescent Protein (GFP), which are used to detect and quantify protein solubility in multiple assay formats, both in vitro and in vivo.

Waldo, Geoffrey S; Cabantous, Stephanie

2014-04-01T23:59:59.000Z

191

Cellulolytic enzymes, nucleic acids encoding them and methods for making and using them  

DOE Patents [OSTI]

The invention provides polypeptides having any cellulolytic activity, e.g., a cellulase activity, a endoglucanase, a cellobiohydrolase, a beta-glucosidase, a xylanase, a mannanse, a .beta.-xylosidase, an arabinofuranosidase, and/or an oligomerase activity, polynucleotides encoding these polypeptides, and methods of making and using these polynucleotides and polypeptides. In one aspect, the invention is directed to polypeptides having any cellulolytic activity, e.g., a cellulase activity, e.g., endoglucanase, cellobiohydrolase, beta-glucosidase, xylanase, mannanse, .beta.-xylosidase, arabinofuranosidase, and/or oligomerase activity, including thermostable and thermotolerant activity, and polynucleotides encoding these enzymes, and making and using these polynucleotides and polypeptides. In one aspect, the invention provides polypeptides having an oligomerase activity, e.g., enzymes that convert recalcitrant soluble oligomers to fermentable sugars in the saccharification of biomass. The polypeptides of the invention can be used in a variety of pharmaceutical, agricultural, food and feed processing and industrial contexts. The invention also provides compositions or products of manufacture comprising mixtures of enzymes comprising at least one enzyme of this invention.

Gray, Kevin A. (San Diego, CA); Zhao, Lishan (Emeryville, CA); Cayouette, Michelle H. (San Diego, CA)

2012-01-24T23:59:59.000Z

192

On-line microdialysis sample cleanup for electrospray ionization mass spectrometry of nucleic acid samples  

SciTech Connect (OSTI)

A major limitation of electrospray ionization mass spectrometry (ESI-MS) for oligonucleotide analysis arises due to sodium adduction, a problem that increases with molecular weight. Sodium adduction can preclude useful measurements when limited sample sizes prevent off-line cleanup. A novel and generally useful on-line microdialysis technique is described for the rapid (nearly 1-5 min) DNA sample cleanup for ESI-MS. Mass spectra of oligonucleotides of different size and sequence showing no significant sodium adduct peaks were obtained using the on-line microdialysis system with sodium chloride concentrations as high as 250 mM. Signal-to-noise ratios were also greatly enhanced compared to direct infusion of the original samples. By using ammonium acetate as the dialysis buffer, it was also found that the noncovalent association of double-stranded oligonucleotides could be preserved during the microdialysis process, allowing analysis by ESI-MS. 33 refs., 6 figs.

Liu, C.; Wu, Q.; Harms, A.C.; Smith, R.D. [Pacific Northwest National Lab., Richland, WA (United States)] [Pacific Northwest National Lab., Richland, WA (United States)

1996-09-15T23:59:59.000Z

193

Enhanced Functional Potential of Nucleic Acid Aptamer Libraries Patterned to Increase Secondary Structure  

E-Print Network [OSTI]

the formation of stem-loop structures without imposing any specific sequence or secondary structural requirement carbon-carbon bond formation,3,4 and oxidation or reduction.5 In addition to ac- celerating chemical

Liu, David R.

194

Detection of nucleic acids by graphene-based devices: A first-principles study  

SciTech Connect (OSTI)

Based on first-principles quantum transport calculations, we design a graphene-based biosensor device, which is composed of graphene nanoribbons electrodes and a biomolecule. It is found that when different nucleobases or poly nucleobase chains are located in the nanogap, the device presents completely different transport properties, showing different current informations. And the change of currents from 2 to 5 orders of magnitude for four different nucleobases suggests a great ability of discrimination by utilizing such a device. The physical mechanism of this phenomenon originates from their different chemical composition and structure. Moreover, we also explore the coupling effect of several neighboring bases and the size effect of the nanogap on transport properties. Our results show the possibility of rapid sequencing DNA by measuring such a transverse-current of the device, and provide a new idea for sequencing DNA.

Zhang, Hua [School of Physics and Electronics, Central South University, Changsha 410083 (China); School of Physics and Electronic Science, Changsha University of Science and Technology, Changsha 410114 (China); Xu, Hui, E-mail: xuhui@csu.edu.cn, E-mail: ouyangfp06@tsinghua.org.cn; Ni, Xiang; Lin Peng, Sheng; Liu, Qi; Ping OuYang, Fang, E-mail: xuhui@csu.edu.cn, E-mail: ouyangfp06@tsinghua.org.cn [School of Physics and Electronics, Central South University, Changsha 410083 (China)

2014-04-07T23:59:59.000Z

195

Nucleic acids encoding phloem small RNA-binding proteins and transgenic plants comprising them  

DOE Patents [OSTI]

The present invention provides a polynucleotide sequence encoding a component of the protein machinery involved in small RNA trafficking, Cucurbita maxima phloem small RNA-binding protein (CmPSRB 1), and the corresponding polypeptide sequence. The invention also provides genetic constructs and transgenic plants comprising the polynucleotide sequence encoding a phloem small RNA-binding protein to alter (e.g., prevent, reduce or elevate) non-cell autonomous signaling events in the plants involving small RNA metabolism. These signaling events are involved in a broad spectrum of plant physiological and biochemical processes, including, for example, systemic resistance to pathogens, responses to environmental stresses, e.g., heat, drought, salinity, and systemic gene silencing (e.g., viral infections).

Lucas, William J.; Yoo, Byung-Chun; Lough, Tony J.; Varkonyi-Gasic, Erika

2007-03-13T23:59:59.000Z

196

Nucleic Acids Research doi:10.1093/nar/gkn305  

E-Print Network [OSTI]

server for rapidly generating accurate 3D protein structures using only assigned nuclear magnetic no NOE and/or J-coupling data to perform its calculations. CS23D accepts chemical shift files in either. Tests conducted on more than 100 proteins from the BioMagResBank indicate that CS23D converges (i

Lin, Guohui

197

Cellulases, nucleic acids encoding them and methods for making and using them  

DOE Patents [OSTI]

This invention relates to molecular and cellular biology and biochemistry. In one aspect, the invention provides polypeptides having cellulase activity, e.g., endoglucanase, cellobiohydrolase, mannanase and/or .beta.-glucosidase activity, polynucleotides encoding these polypeptides, and methods of making and using these polynucleotides and polypeptides. In one aspect, the invention is directed to polypeptides cellulase activity, e.g., endoglucanase, cellobiohydrolase, mannanase and/or .beta.-glucosidase activity, including thermostable and thermotolerant activity, and polynucleotides encoding these enzymes, and making and using these polynucleotides and polypeptides. The polypeptides of the invention can be used in a variety of pharmaceutical, agricultural, food and feed processing and industrial contexts.

Blum, David; Gemsch Cuenca, Joslin; Dycaico, Mark

2013-04-23T23:59:59.000Z

198

Y chromosome specific nucleic acid probe and method for determining the Y chromosome in situ  

DOE Patents [OSTI]

A method for producing a Y chromosome specific probe selected from highly repeating sequences on that chromosome is described. There is little or no nonspecific binding to autosomal and X chromosomes, and a very large signal is provided. Inventive primers allowing the use of PCR for both sample amplification and probe production are described, as is their use in producing large DNA chromosome painting sequences. 9 figs.

Gray, J.W.; Weier, H.U.

1998-11-24T23:59:59.000Z

199

Y chromosome specific nucleic acid probe and method for identifying the Y chromosome in SITU  

DOE Patents [OSTI]

A method for producing a Y chromosome specific probe selected from highly repeating sequences on that chromosome is described. There is little or no nonspecific binding to autosomal and X chromosomes, and a very large signal is provided. Inventive primers allowing the use of PCR for both sample amplification and probe production are described, as is their use in producing large DNA chromosome painting sequences. 9 figs.

Gray, J.W.; Weier, H.U.

1999-03-30T23:59:59.000Z

200

Nucleic Acids Research doi:10.1093/nar/gkn465  

E-Print Network [OSTI]

is a histone acetyltransferase implicated in the regulation of transcriptional silencing, and ORC is the six the temperature sensitivity of the ORC mutants orc2-1 and orc5-1. Moreover, sas2D and orc2-1 have a synthetic and orc5-1 have a synthetic effect on transcriptional silencing at the HMR locus. Moreover, we demon

Bi, Xin

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


201

Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins  

E-Print Network [OSTI]

polyelec- trolytes and protein folding in particular, standsdynamics ? protein folding ? single-molecule ?uorescencestructure and dynamics. Protein folding is the most spec-

Laurence, T A; Kong, X X; Jager, M; Weiss, S

2005-01-01T23:59:59.000Z

202

A HANDHELD MAGNETIC SENSING PLATFORM FOR ANTIGEN AND NUCLEIC ACID DETECTION  

E-Print Network [OSTI]

of manufacturing development for superior reliability, scalability, and low-cost. The electrical details cable for communication and power. (b) Disposable Cartridge. The disposable cartridge consists of an electrically connected integrated circuit chip inside a polypropylene well. (c) Chip Surface after Immunoassay

Weinreb, Sander

203

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes  

E-Print Network [OSTI]

is the addition and full optimization of all hydrogen atoms, bothpolar and nonpolar.The results are reported. The all-atom contact analysis (7) featured on the MOLPROBITY site provides a simple but powerful system uses the information from both hydro- gen bonding and all-atom steric compatibility to fully

Richardson, David

204

An unprecedented nucleic acid capture mechanism for excision of DNA damage  

SciTech Connect (OSTI)

DNA glycosylases that remove alkylated and deaminated purine nucleobases are essential DNA repair enzymes that protect the genome, and at the same time confound cancer alkylation therapy, by excising cytotoxic N3-methyladenine bases formed by DNA-targeting anticancer compounds. The basis for glycosylase specificity towards N3- and N7-alkylpurines is believed to result from intrinsic instability of the modified bases and not from direct enzyme functional group chemistry. Here we present crystal structures of the recently discovered Bacillus cereus AlkD glycosylase in complex with DNAs containing alkylated, mismatched and abasic nucleotides. Unlike other glycosylases, AlkD captures the extrahelical lesion in a solvent-exposed orientation, providing an illustration for how hydrolysis of N3- and N7-alkylated bases may be facilitated by increased lifetime out of the DNA helix. The structures and supporting biochemical analysis of base flipping and catalysis reveal how the HEAT repeats of AlkD distort the DNA backbone to detect non-Watson-Crick base pairs without duplex intercalation.

Rubinson, Emily H.; Prakasha Gowda, A.S.; Spratt, Thomas E.; Gold, Barry; Eichmanbrand, Brandt F. (Pitt); (Vanderbilt); (Penn)

2010-11-18T23:59:59.000Z

205

Single-molecule characterization and engineering of the surfaces of nucleic acid sensors  

E-Print Network [OSTI]

Diamond Nanopure water purification system was used.laboratory water purification system (18.2 M?·cm). In a

Josephs, Eric Alan

2013-01-01T23:59:59.000Z

206

Bioluminescence regenerative cycle (BRC) system: Theoretical considerations for nucleic acid quantification assays  

E-Print Network [OSTI]

. In the BRC system, pyrophosphate (PPi) molecules are released during biopolymerization and are counted

Hassibi, Arjang

207

Thermo-Biolithography: A Technique for Patterning Nucleic Acids and Proteins  

E-Print Network [OSTI]

fluorescent protein (using tyrosinase-initiated conjugation). Because gelatin can be applied and removed under

Rubloff, Gary W.

208

Structure-based model for light-harvesting properties of nucleic acid nanostructures  

E-Print Network [OSTI]

Programmed self-assembly of DNA enables the rational design of megadalton-scale macromolecular assemblies with sub-nanometer scale precision. These assemblies can be programmed to serve as structural scaffolds for secondary ...

Pan, Keyao

209

Type I Interferon is Not Just for Viruses: Cytosolic Sensing of Bacterial Nucleic Acids  

E-Print Network [OSTI]

in the recognition of Helicobacter pylori. Gastroenterologypneumophila, Helicobacter pylori, Francisella tularensis,the focus of Chapter 3. Helicobacter pylori is another gram-

Monroe, Kathryn McGee

2011-01-01T23:59:59.000Z

210

STRUCTURAL EFFECTS ON THE CIRCULAR DICHROISM OF ETHIDIUM-NUCLEIC ACID COMPLEXES  

E-Print Network [OSTI]

trup et al. (1978) examined dye binding with pdC- dG-dC-dG (2 dC-dG sites), pdC-dC-dG-dG (l dC-dG site), pdG-dG-dC-dC,1 dC-dG Site). For dye plus pdC-dG-dC-dG, both dC-dG sites

Dahl, Kenneth Steven

2013-01-01T23:59:59.000Z

211

Relations between intraruminal protein and nucleic acid synthesis and forms of urinary nitrogen excreted by sheep  

E-Print Network [OSTI]

alcohol. The samples were coils. cted in duplicates. An attempt was made to determine the volume of the rumen digesta and its passage out of the reticulo-rumen by usi. ng polyethylene glycol. An appropriate amount of polyethylene glycol (2 gm... procedure for poly- ethylene glycol it was not possible to determine the volume of the rumen digesta and rate of passage out of the reticulo-rumen. Fasting Animals At the end of all experimer. . tal feeding and collection periods, the rumens of two...

Razzaque, Md. Abdur

1967-01-01T23:59:59.000Z

212

Integration of On-chip Isotachophoresis and Functionalized Hydrogels for Enhanced-Sensitivity Nucleic Acid Detection  

E-Print Network [OSTI]

of Mechanical Engineering, Stanford University, Stanford, CA 94305, USA *E-mail: juan purchased crown glass microfluidic chips (model NS260) and separate plastic chip caddies from Caliper Life of prepolymer mastermix, ITP buffers, and surface modification reagents Composition of our prepolymer is similar

Santiago, Juan G.

213

Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures  

E-Print Network [OSTI]

DNA nanotechnology enables the programmed synthesis of intricate nanometer-scale structures for diverse applications in materials and biological science. Precise control over the 3D solution shape and mechanical flexibility ...

Kilchherr, F.

214

Nature and Magnitude of Aromatic Stacking of Nucleic Acid Bases. | EMSL  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE:1 First Use of Energy for All Purposes (Fuel and Nonfuel),Feet) Year Jan Feb Mar Apr MayAtmosphericNuclear Security Administration the Contributions andDataNational Library of1, 2007 (next release3,3,Nature and Magnitude

215

Progress Report No. AT(11-1)-3083-6 RE: Nucleic Acids and Protein...  

Office of Scientific and Technical Information (OSTI)

Chiu, N., Chiu, A. & Suyama, Y. (1974). J. Mol. Biol. (In the ress). 4. Elder, K.T. & Smith, A.E. (1973). Proc. Natl. Acad. Sci. U.S.A . 70, .. 1 2823-2826. ' 5. Gillespie, D. &...

216

Balance of Attraction and Repulsion in Nucleic-Acid Base Stacking:  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE:1 First Use of Energy for All Purposes (Fuel and Nonfuel),Feet) Year Jan Feb Mar Apr May JunDatastreamsmmcrcalgovInstrumentsruc DocumentationP-Series to someone6 M. Babzien, I. Ben-Zvi, P. Study ofJ U LY 2AVS trustee

217

Disposable and removable nucleic acid extraction and purification cartridges for automated flow-through systems  

DOE Patents [OSTI]

Removable cartridges are used on automated flow-through systems for the purpose of extracting and purifying genetic material from complex matrices. Different types of cartridges are paired with specific automated protocols to concentrate, extract, and purifying pathogenic or human genetic material. Their flow-through nature allows large quantities sample to be processed. Matrices may be filtered using size exclusion and/or affinity filters to concentrate the pathogen of interest. Lysed material is ultimately passed through a filter to remove the insoluble material before the soluble genetic material is delivered past a silica-like membrane that binds the genetic material, where it is washed, dried, and eluted. Cartridges are inserted into the housing areas of flow-through automated instruments, which are equipped with sensors to ensure proper placement and usage of the cartridges. Properly inserted cartridges create fluid- and air-tight seals with the flow lines of an automated instrument.

Regan, John Frederick

2014-09-09T23:59:59.000Z

218

Low-Latency Multi-Datacenter Databases using Replicated Hatem A. Mahmoud, Alexander Pucher, Faisal Nawab,  

E-Print Network [OSTI]

Low-Latency Multi-Datacenter Databases using Replicated Commits Hatem A. Mahmoud, Alexander Pucher to provide the same ACID transac- tional guarantees for multi-datacenter databases with fewer cross- datacenter communication trips, compared to replicated logging, by using a more efficient architecutre

California at Santa Barbara, University of

219

Incremental elasticity for array databases  

E-Print Network [OSTI]

Relational databases benefit significantly from elasticity, whereby they execute on a set of changing hardware resources provisioned to match their storage and processing requirements. Such flexibility is especially ...

Duggan, Jennie

220

Energy Citations Database (ECD) - Architecture  

Office of Scientific and Technical Information (OSTI)

Search Architecture - What Is under the hood? The Energy Citations Database makes searchable over two million bibliographic citations for energy and energy related STI from the...

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


221

Ribosomal Database Project II  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The Ribosomal Database Project (RDP) provides ribosome related data and services to the scientific community, including online data analysis and aligned and annotated Bacterial small-subunit 16S rRNA sequences. As of March 2008, RDP Release 10 is available and currently (August 2009) contains 1,074,075 aligned 16S rRNA sequences. Data that can be downloaded include zipped GenBank and FASTA alignment files, a histogram (in Excel) of the number of RDP sequences spanning each base position, data in the Functional Gene Pipeline Repository, and various user submitted data. The RDP-II website also provides numerous analysis tools.[From the RDP-II home page at http://rdp.cme.msu.edu/index.jsp

222

The rice kinase database. A phylogenomic database for the rice kinome.  

E-Print Network [OSTI]

Bioinformatics The Rice Kinase Database.A Phylogenomic Database for the Rice Kinome 1[OA]created a phylogenomic database (http://rkd.ucdavis.edu) to

Dardick, Christopher; Chen, Johann; Richter, Todd; Ouyang, Shu; Ronald, Pamela

2007-01-01T23:59:59.000Z

223

PARALLEL DATABASE MACHINES Kjell Bratbergsengen  

E-Print Network [OSTI]

by NFR formerly NTNF, Intel Norway AS, Eltron AS and Norwegian Telecom. 1 February 13, 1996 8:51 am #12 The Norwegian Institute of Technology University of Trondheim Email: kjellb@idt.unit.no Summary The idea and database servers for "new" data types, notably film and video. THE TRAUMATIC HISTORY OF DATABASE COMPUTERS

224

TOWARDS UNIFYING DATABASE SCHEDULING AND  

E-Print Network [OSTI]

1 TOWARDS UNIFYING DATABASE SCHEDULING AND CONCURRENCY CONTROL: A FRONTIER APPROACH Gregory Jones previous work in real-time database concurrency control indexconcur- rency control and scheduling has focused on combiningvariations of traditional concurrency control techniques with real-time scheduling

Rhode Island, University of

225

Use of plant fatty acyl hydroxylases to produce hydroxylated fatty acids and derivatives in plants  

DOE Patents [OSTI]

The present invention relates to the identification of nucleic acid sequences and constructs, and methods related thereto, and the use of these sequences and constructs to produce genetically modified plants for the purpose of altering the composition of plant oils, waxes and related compounds.

Somerville, Chris (Portola Valley, CA); van de Loo, Frank (Lexington, KY)

2002-01-01T23:59:59.000Z

226

Temporal Databases Status and Research Directions  

E-Print Network [OSTI]

these databases several thousand years and look up the (then current) grain harvest. Oral histories, e.g., Homer transaction time, recording a history of updates made to the database. Such a database supports rollback to a previous stored state of the database. An historical database supports valid time, recording a history

Snodgrass, Richard T.

227

Database Hints for Readex's AccessUN  

E-Print Network [OSTI]

Database Hints for Readex's AccessUN Direct Link to Database: http://infoweb.newsbank.com/?db=UNAD Database Scope Readex's AccessUN database provides an index to United Nations documents from the six main Council, Secretariat and International Court of Justice. This database covers documents from 1946

Stowell, Michael

228

Chapter 20Chapter 20 Physical Database  

E-Print Network [OSTI]

1 Chapter 20Chapter 20 Physical Database Design and Tuning Copyright © 2011 Pearson Education, Inc. Publishing as Pearson Addison-Wesley 1. Physical Database Design in Relational Databases (1) Factors that Influence Physical Database Design: A. Analyzing the database queries and transactionsA. Analyzing

Yang, Jing

229

IMPROVING DATABASE DESIGN TEACHING IN SECONDARY EDUCATION  

E-Print Network [OSTI]

Review Copy IMPROVING DATABASE DESIGN TEACHING IN SECONDARY EDUCATION: ACTION RESEARCH Education, University of Patras, 26500, Patras, GREECE. Abstract Database design and use has educational interest for utilitarian and learning reasons. Database technology has significant economic impact

Paris-Sud XI, Université de

230

Intelligent Transportation Systems Deployment Statistics Database  

E-Print Network [OSTI]

Intelligent Transportation Systems Deployment Statistics Database Oak Ridge National Laboratory direction. In addition, through the ITS Deployment Tracking web site, the database supports other users in 2010. Users can also download the entire 2010 deployment tracking database through the website

231

Meteorological database for the United States  

E-Print Network [OSTI]

to Indoor Air Meteorological Database for the United StatesUC-402 Meteorological Database for the United States M.G.Abstract A meteorological database has been developed to aid

Apte, M.G.

2011-01-01T23:59:59.000Z

232

Hydrogen Storage Materials Database Demonstration Webinar (Text...  

Broader source: Energy.gov (indexed) [DOE]

Database Demonstration Webinar (Text Version) Hydrogen Storage Materials Database Demonstration Webinar (Text Version) Below is the text version of the webinar titled "Hydrogen...

233

SIX GOING ON SEVEN Database Dictionary  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

SIX GOING ON SEVEN Database Dictionary This database dictionary provides a brief explanation of measure naming schemes and mapping used to align the Northwest Power and...

234

Accelerating Materials Discovery With World's Largest Database...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Expanding the World's Largest Database of Elastic Properties Expanding the World's Largest Database of Elastic Properties NERSC, Materials Project Help Scientists Increase...

235

ORISE: Human Subjects Research Database  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Human Subjects Research Database Section 10, Part 745 of the Code of Federal Regulations and U.S. Department of Energy (DOE) Orders 443.1 and 481.1 require the maintenance of...

236

Marine and Hydrokinetic Technology Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

DOE’s Marine and Hydrokinetic Technology Database provides up-to-date information on marine and hydrokinetic renewable energy, both in the U.S. and around the world. The database includes wave, tidal, current, and ocean thermal energy, and contains information on the various energy conversion technologies, companies active in the field, and development of projects in the water. Depending on the needs of the user, the database can present a snapshot of projects in a given region, assess the progress of a certain technology type, or provide a comprehensive view of the entire marine and hydrokinetic energy industry. Results are displayed as a list of technologies, companies, or projects. Data can be filtered by a number of criteria, including country/region, technology type, generation capacity, and technology or project stage. The database was updated in 2009 to include ocean thermal energy technologies, companies, and projects.

237

World electric power plants database  

SciTech Connect (OSTI)

This global database provides records for 104,000 generating units in over 220 countries. These units include installed and projected facilities, central stations and distributed plants operated by utilities, independent power companies and commercial and self-generators. Each record includes information on: geographic location and operating company; technology, fuel and boiler; generator manufacturers; steam conditions; unit capacity and age; turbine/engine; architect/engineer and constructor; and pollution control equipment. The database is issued quarterly.

NONE

2006-06-15T23:59:59.000Z

238

Rice Glycosyltransferase (GT) Phylogenomic Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The Ronald Laboratory staff at the University of California-Davis has a primary research focus on the genes of the rice plant. They study the role that genetics plays in the way rice plants respond to their environment. They created the Rice GT Database in order to integrate functional genomic information for putative rice Glycosyltransferases (GTs). This database contains information on nearly 800 putative rice GTs (gene models) identified by sequence similarity searches based on the Carbohydrate Active enZymes (CAZy) database. The Rice GT Database provides a platform to display user-selected functional genomic data on a phylogenetic tree. This includes sequence information, mutant line information, expression data, etc. An interactive chromosomal map shows the position of all rice GTs, and links to rice annotation databases are included. The format is intended to "facilitate the comparison of closely related GTs within different families, as well as perform global comparisons between sets of related families." [From http://ricephylogenomics.ucdavis.edu/cellwalls/gt/genInfo.shtml] See also the primary paper discussing this work: Peijian Cao, Laura E. Bartley, Ki-Hong Jung and Pamela C. Ronalda. Construction of a Rice Glycosyltransferase Phylogenomic Database and Identification of Rice-Diverged Glycosyltransferases. Molecular Plant, 2008, 1(5): 858-877.

Ronald, Pamela

239

Summary of Bugs Database Jeremy Kepner  

E-Print Network [OSTI]

written to create the current version of the bugs database. 1.2 Brief Project History Development1 Summary of Bugs Database Jeremy Kepner September, 1993 1. Introduction 1.1 Document Purpose of the Bugs database began in May of 1992. Initially, a very simple database model was used. By July

Kepner, Jeremy

240

Benchmarking Database Systems A Systematic Approach  

E-Print Network [OSTI]

Benchmarking Database Systems A Systematic Approach Dina Bitton David J. DeWitt Carolyn Turbyfill-81ER10920. #12;ABSTRACT This paper describes a customized database and a comprehensive set of queries that can be used for sys- tematic benchmarking of relational database systems. Designing this database

Liblit, Ben

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


241

Protein sequence databases Rolf Apweiler1,  

E-Print Network [OSTI]

Information NREF non-redundant reference databases PDB Protein Data Bank PIR Protein Information Resource PIR

242

National Residential Efficiency Measures Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The National Residential Efficiency Measures Database is a publicly available, centralized resource of residential building retrofit measures and costs for the U.S. building industry. With support from the U.S. Department of Energy, NREL developed this tool to help users determine the most cost-effective retrofit measures for improving energy efficiency of existing homes. Software developers who require residential retrofit performance and cost data for applications that evaluate residential efficiency measures are the primary audience for this database. In addition, home performance contractors and manufacturers of residential materials and equipment may find this information useful. The database offers the following types of retrofit measures: 1) Appliances, 2) Domestic Hot Water, 3) Enclosure, 4) Heating, Ventilating, and Air Conditioning (HVAC), 5) Lighting, 6) Miscellaneous.

243

DOE Global Energy Storage Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The DOE International Energy Storage Database has more than 400 documented energy storage projects from 34 countries around the world. The database provides free, up-to-date information on grid-connected energy storage projects and relevant state and federal policies. More than 50 energy storage technologies are represented worldwide, including multiple battery technologies, compressed air energy storage, flywheels, gravel energy storage, hydrogen energy storage, pumped hydroelectric, superconducting magnetic energy storage, and thermal energy storage. The policy section of the database shows 18 federal and state policies addressing grid-connected energy storage, from rules and regulations to tariffs and other financial incentives. It is funded through DOE’s Sandia National Laboratories, and has been operating since January 2012.

244

E-Print Network 3.0 - aromatic polycarboxylic acids Sample Search...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Databases and Resources ; Environmental Sciences and Ecology ; Geosciences 3 Preserved lignin structures in Miocene-aged lignite lithotypes, Bulgaria Summary: polycarboxylic acids...

245

E-Print Network 3.0 - acetylsalicylic acid supplementation Sample...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Collection: Mathematics 84 Fate of pharmaceuticals and personal care products in wastewater treatment plants -Conception of a database and first results Summary: acid (detected...

246

A Methodology Database System Performance Evaluation  

E-Print Network [OSTI]

Corporation VAX 11 product line. The relational database systems/machines that are currently available for the VAX include the IDM 500 database machine, INGRES, INFORMEX, MISTRESS, ORACLE, RIM, and UNIFY. A user

Liblit, Ben

247

6.830 Database Systems, Fall 2005  

E-Print Network [OSTI]

This course relies on primary readings from the database community to introduce graduate students to the foundations of database systems, focusing on basics such as the relational algebra and data model, schema normalization, ...

Madden, Samuel

248

Efficient Versioning for Scientific Array Databases  

E-Print Network [OSTI]

In this paper, we describe a versioned database storage manager we are developing for the SciDB scientific database. The system is designed to efficiently store and retrieve array-oriented data, exposing a "no-overwrite" ...

Seering, Adam

249

Workload-Aware Database Monitoring and Consolidation  

E-Print Network [OSTI]

In most enterprises, databases are deployed on dedicated database servers. Often, these servers are underutilized much of the time. For example, in traces from almost 200 production servers from different organizations, ...

Curino, Carlo

250

Webinar: Hydrogen Storage Materials Database Demonstration  

Broader source: Energy.gov [DOE]

Video recording and text version of the webinar, Hydrogen Storage Materials Database Demonstration, originally presented on December 13, 2011.

251

Webinar: NREL's Fuel Cell Contaminant Database  

Broader source: Energy.gov [DOE]

Video recording and text version of the webinar titled "NREL's Fuel Cell Contaminant Database," originally presented on May 27, 2014.

252

1991-2005 National Solar Radiation Database  

SciTech Connect (OSTI)

This fact sheet provides an overview of the purpose, benefit, and features of the newly updated National Solar Radiation Database.

Wilcox, S.

2007-05-01T23:59:59.000Z

253

The Majorana Parts Tracking Database  

E-Print Network [OSTI]

The Majorana Demonstrator is an ultra-low background physics experiment searching for the neutrinoless double beta decay of $^{76}$Ge. The Majorana Parts Tracking Database is used to record the history of components used in the construction of the Demonstrator. The tracking implementation takes a novel approach based on the schema-free database technology CouchDB. Transportation, storage, and processes undergone by parts such as machining or cleaning are linked to part records. Tracking parts provides a great logistics benefit and an important quality assurance reference during construction. In addition, the location history of parts provides an estimate of their exposure to cosmic radiation. A web application for data entry and a radiation exposure calculator have been developed as tools for achieving the extreme radio-purity required for this rare decay search.

Abgrall, N; Avignone, F T; Bertrand, F E; Brudanin, V; Busch, M; Byram, D; Caldwell, A S; Chan, Y-D; Christofferson, C D; Combs, D C; Cuesta, C; Detwiler, J A; Doe, P J; Efremenko, Yu; Egorov, V; Ejiri, H; Elliott, S R; Esterline, J; Fast, J E; Finnerty, P; Fraenkle, F M; Galindo-Uribarri, A; Giovanetti, G K; Goett, J; Green, M P; Gruszko, J; Guiseppe, V E; Gusev, K; Hallin, A L; Hazama, R; Hegai, A; Henning, R; Hoppe, E W; Howard, S; Howe, M A; Keeter, K J; Kidd, M F; Kochetov, O; Kouzes, R T; LaFerriere, B D; Leon, J Diaz; Leviner, L E; Loach, J C; MacMullin, J; Martin, R D; Meijer, S J; Mertens, S; Miller, M L; Mizouni, L; Nomachi, M; Orrell, J L; O'Shaughnessy, C; Overman, N R; Petersburg, R; Phillips, D G; Poon, A W P; Pushkin, K; Radford, D C; Rager, J; Rielage, K; Robertson, R G H; Romero-Romero, E; Ronquest, M C; Shanks, B; Shima, T; Shirchenko, M; Snavely, K J; Snyder, N; Soin, A; Suriano, A M; Tedeschi, D; Thompson, J; Timkin, V; Tornow, W; Trimble, J E; Varner, R L; Vasilyev, S; Vetter, K; Vorren, K; White, B R; Wilkerson, J F; Wiseman, C; Xu, W; Yakushev, E; Young, A R; Yu, C -H; Zhitnikov, I

2015-01-01T23:59:59.000Z

254

The Majorana Parts Tracking Database  

E-Print Network [OSTI]

The Majorana Demonstrator is an ultra-low background physics experiment searching for the neutrinoless double beta decay of $^{76}$Ge. The Majorana Parts Tracking Database is used to record the history of components used in the construction of the Demonstrator. The tracking implementation takes a novel approach based on the schema-free database technology CouchDB. Transportation, storage, and processes undergone by parts such as machining or cleaning are linked to part records. Tracking parts provides a great logistics benefit and an important quality assurance reference during construction. In addition, the location history of parts provides an estimate of their exposure to cosmic radiation. A web application for data entry and a radiation exposure calculator have been developed as tools for achieving the extreme radio-purity required for this rare decay search.

The Majorana Collaboration; N. Abgrall; E. Aguayo; F. T. Avignone III; A. S. Barabash; F. E. Bertrand; V. Brudanin; M. Busch; D. Byram; A. S. Caldwell; Y-D. Chan; C. D. Christofferson; D. C. Combs; C. Cuesta; J. A. Detwiler; P. J. Doe; Yu. Efremenko; V. Egorov; H. Ejiri; S. R. Elliott; J. Esterline; J. E. Fast; P. Finnerty; F. M. Fraenkle; A. Galindo-Uribarri; G. K. Giovanetti; J. Goett; M. P. Green; J. Gruszko; V. E. Guiseppe; K. Gusev; A. L. Hallin; R. Hazama; A. Hegai; R. Henning; E. W. Hoppe; S. Howard; M. A. Howe; K. J. Keeter; M. F. Kidd; O. Kochetov; S. I. Konovalov; R. T. Kouzes; B. D. LaFerriere; J. Diaz Leon; L. E. Leviner; J. C. Loach; J. MacMullin; R. D. Martin; S. J. Meijer; S. Mertens; M. L. Miller; L. Mizouni; M. Nomachi; J. L. Orrell; C. O'Shaughnessy; N. R. Overman; R. Petersburg; D. G. Phillips II; A. W. P. Poon; K. Pushkin; D. C. Radford; J. Rager; K. Rielage; R. G. H. Robertson; E. Romero-Romero; M. C. Ronquest; B. Shanks; T. Shima; M. Shirchenko; K. J. Snavely; N. Snyder; A. Soin; A. M. Suriano; D. Tedeschi; J. Thompson; V. Timkin; W. Tornow; J. E. Trimble; R. L. Varner; S. Vasilyev; K. Vetter; K. Vorren; B. R. White; J. F. Wilkerson; C. Wiseman; W. Xu; E. Yakushev; A. R. Young; C. -H. Yu; V. Yumatov; I. Zhitnikov

2015-02-05T23:59:59.000Z

255

Search Log Analysis of the ARTstor Cultural Heritage Image Database  

E-Print Network [OSTI]

Patterns in a Digital Image Database. Information RetrievalCultural Heritage Image Database A thesis submitted inCultural Heritage Image Database by Heather Ann Lowe Master

Lowe, Heather Ann

2013-01-01T23:59:59.000Z

256

SUN Attribute Database: Discovering, Annotating, and Recognizing Scene Attributes  

E-Print Network [OSTI]

SUN Attribute Database: Discovering, Annotating, and Recognizing Scene Attributes Genevieve attributes. Next, we build the "SUN attribute database" on top of the diverse SUN categorical database. Our

Hays, James

257

Data Modelling and Database Requirements Geographical Data  

E-Print Network [OSTI]

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14 Brief history 15 Definitions 15 The three-schema architecture 16 Features/services of databaseData Modelling and Database Requirements for Geographical Data HÃ¥vard Tveite January, 1997 #12-Model Substitution, and adds new symbology that is relevant for geographical data. Database system requirements

258

Supporting Database Provenance under Schema Evolution  

E-Print Network [OSTI]

,11] have significantly simplified the problems of preserving the history of the database schemaSupporting Database Provenance under Schema Evolution Shi Gao and Carlo Zaniolo University of California, Los Angeles {gaoshi, zaniolo}@cs.ucla.edu Abstract. Database schema upgrades are common in modern

Zaniolo, Carlo

259

NICMOS HISTORY DATABASE AND April 10, 1998  

E-Print Network [OSTI]

1 NICMOS HISTORY DATABASE AND WEB TOOLS C. Tullos April 10, 1998 ABSTRACT The history of NICMOS. The Database and Data A convenient way of keeping a history of some of the NICMOS instrument parameters parameters apply. Instrument Science Report OSG-CAL 98-01 #12;2 NICMOS HISTORY DATABASE LAYOUT 2. The Web

Sirianni, Marco

260

Database Transposition for Constrained (Closed) Pattern Mining  

E-Print Network [OSTI]

Database Transposition for Constrained (Closed) Pattern Mining Baptiste Jeudy1 and Fran¸cois Rioult pat- terns in databases with pathological size. For example, experiments in genome biology usually provide databases with thousands of attributes (genes) but only tens of objects (experiments

Paris-Sud XI, Université de

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


261

Database System Concepts Silberschatz, Korth and Sudarshan  

E-Print Network [OSTI]

Database System Concepts ©Silberschatz, Korth and Sudarshan See www.db-book.com for conditions on re-use ©Silberschatz, Korth and SudarshanDatabase System Concepts Chapter 8: Application Design andChapter 8: Application Design and DevelopmentDevelopment #12;©Silberschatz, Korth and Sudarshan8.2Database

Dragan, Feodor F.

262

GRAPHDB -a database of Axel Kohnert  

E-Print Network [OSTI]

GRAPHDB - a database of graphs March 2003 Axel Kohnert University of Bayreuth http://btm2xg ADMIN DBUSER ¡£¢ DB ¤ ¥ GRAPHVIEWER ¦ GRAPHSERVER #12;A: The Database Part I. THE MASTER TABLE #12;B: The client access to the database There are several web pages which allow the search

Laue, Reinhard

263

DESCRIPTIVE TEXT SEA WATER INORGANIC CARBON DATABASE  

E-Print Network [OSTI]

DESCRIPTIVE TEXT SEA WATER INORGANIC CARBON DATABASE for the CARBON DIOXIDE INFORMATION OF OCEANOGRAPHY (SIO) I. GENERAL DESCRIPTION The database consists of tables presenting oceanic inorganic carbon, titration (total) alkalinity (database abbreviation: "ALK"), and the 13 C / 12 C isotopic ratio

264

Comprehensive Database on Concrete Creep and Shrinkage  

E-Print Network [OSTI]

Comprehensive Database on Concrete Creep and Shrinkage Zdenek P. Bazant and Guang-Hua Li Structural Database on Concrete Creep and Shrinkage Zdenek P. Bazant1 and Guang-Hua Li2 Abstract: As a sequel to the first large database created at Northwestern University in 1978, the paper presents a further

265

Computer Note A Prototype Object Database for  

E-Print Network [OSTI]

Computer Note A Prototype Object Database for Mitochondrial DNA Variation J. E. NEIGEL AND P preserved. We hope to prevent further loss by establishing a community database for population genetic surveys. We explored the feasibility of a population genetics database by developing a prototype

Neigel, Joseph E.

266

DATABASE AUTHENTICATION BY DISTORTION FREE WATERMARKING  

E-Print Network [OSTI]

DATABASE AUTHENTICATION BY DISTORTION FREE WATERMARKING Sukriti Bhattacharya and Agostino Cortesi@dsi.unive.it, cortesi@unive.it Keywords: Database watermarking, ZAW, Public key watermark, Abstract interpretation the verification of integrity of the relational databases by using a public zero distortion authentication

Cortesi, Tino

267

Bioinformatics The Maize Genetics and Genomics Database.  

E-Print Network [OSTI]

Bioinformatics The Maize Genetics and Genomics Database. The Community Resource for Access 50011­3260 (T.E.S.) The Maize Genetics and Genomics Database (MaizeGDB) serves the maize (Zea mays data types available through MaizeGDB. MISSION AND SCOPE The Maize Genetics and Genomics Database

Brendel, Volker

268

8, 76577702, 2008 A new database of  

E-Print Network [OSTI]

ACPD 8, 7657­7702, 2008 A new database of trace gases and aerosols B. Hassler et al. Title Page.0 License. Atmospheric Chemistry and Physics Discussions Technical Note: A new global database of trace­7702, 2008 A new database of trace gases and aerosols B. Hassler et al. Title Page Abstract Introduction

Paris-Sud XI, Université de

269

Databases  

E-Print Network [OSTI]

Mcgregor,D. Cockshott,P. Wilson,J. US Patent 6169990 British Patent, Volume BP 9604522.4 Academic Press

Mcgregor, D.; Cockshott, P.; Wilson, J.; US Patent 6169990 British Patent, Volume BP 9604522.4 Academic Press [More Details

270

Using XML to Build Efficient Transaction-Time Temporal Database Systems on Relational Databases  

E-Print Network [OSTI]

(virtual) representations of the database history, (b) XQuery to express powerful temporal queriesUsing XML to Build Efficient Transaction-Time Temporal Database Systems on Relational Databases the ArchIS system that achieves full-functionality transaction-time databases without re- quiring temporal

Zaniolo, Carlo

271

Distributed DatabasesDistributed Databases Based on material provided by:Based on material provided by  

E-Print Network [OSTI]

/References ?? A Database Management SystemA Database Management System (DBMS) is a software package designed(DBMS Databases, 2001 5 Why Use a DBMS?Why Use a DBMS? ?? Data IndependenceData Independence ?? Efficient Access data #12;J.J.Bunn, Distributed Databases, 2001 9 Concurrency ControlConcurrency Control ?? Good DBMS

272

Artemis Chado database -practical guide Annotation in the database version of Artemis  

E-Print Network [OSTI]

-1- Artemis Chado database - practical guide Annotation in the database version of Artemis 1 directory for the backup files and optionally save this setting between sessions. Wait for the `Database and File Manager' to be loaded. Click on `Launch Artemis'. #12;-2- Artemis Chado database - practical guide

Maizels, Rick

273

The USC CreativeIT Database: A Multimodal Database of Theatrical Improvisation  

E-Print Network [OSTI]

The USC CreativeIT Database: A Multimodal Database of Theatrical Improvisation Angeliki Metallinou' creativity. The USC CreativeIT database provides a novel bridge between the study of theatrical improvisation and human expressive behavior in dyadic interaction. The theoretical design of the database is based

Busso, Carlos

274

NIST Standard Reference Database 88 NIST/TRC Ideal Gas Database  

E-Print Network [OSTI]

#12;NIST Standard Reference Database 88 NIST/TRC Ideal Gas Database Version 2.0 Users' Guide Data of the database and to verify that the data contained therein have been selected on the basis of sound scientific that may result from errors or omissions in the database. COPYRIGHT (C) 2006 copyright by the U

Magee, Joseph W.

275

CIS 330: Database Management Systems Course Number & Title (A.1) CIS 330: Database Management Systems  

E-Print Network [OSTI]

CIS 330: Database Management Systems Course Number & Title (A.1) CIS 330: Database Management & Johannes Gehrke, Database Management Systems (third edition), McGraw Hill. Additional materials as handouts, e.g., research papers Catalog Description (A.5a) Introduction to database management systems

Plotkin, Joshua B.

276

Database specification for the Worldwide Port System (WPS) Regional Integrated Cargo Database (ICDB)  

SciTech Connect (OSTI)

This Database Specification for the Worldwide Port System (WPS) Regional Integrated Cargo Database (ICDB) describes the database organization and storage allocation, provides the detailed data model of the logical and physical designs, and provides information for the construction of parts of the database such as tables, data elements, and associated dictionaries and diagrams.

Faby, E.Z.; Fluker, J.; Hancock, B.R.; Grubb, J.W.; Russell, D.L. [Univ. of Tennessee, Knoxville, TN (United States)] [Univ. of Tennessee, Knoxville, TN (United States); Loftis, J.P.; Shipe, P.C.; Truett, L.F. [Oak Ridge National Lab., TN (United States)] [Oak Ridge National Lab., TN (United States)

1994-03-01T23:59:59.000Z

277

Overview of selected molecular biological databases  

SciTech Connect (OSTI)

This paper presents an overview of the purpose, content, and design of a subset of the currently available biological databases, with an emphasis on protein databases. Databases included in this summary are 3D-ALI, Berlin RNA databank, Blocks, DSSP, EMBL Nucleotide Database, EMP, ENZYME, FSSP, GDB, GenBank, HSSP, LiMB, PDB, PIR, PKCDD, ProSite, and SWISS-PROT. The goal is to provide a starting point for researchers who wish to take advantage of the myriad available databases. Rather than providing a complete explanation of each database, we present its content and form by explaining the details of typical entries. Pointers to more complete ``user guides`` are included, along with general information on where to search for a new database.

Rayl, K.D.; Gaasterland, T.

1994-11-01T23:59:59.000Z

278

This overview covers: Connecting to a Chado Database  

E-Print Network [OSTI]

This overview covers: · Connecting to a Chado Database · Reading From the Database · iBatis Database Mapping · Gene Representation · Gene Building · Gene merging and splitting · Transfer Annotation Tool · Writing To The Database · Opening the Standalone Gene Builder · Community Annotation · Writing

Maizels, Rick

279

Methods and compounds for chemical ligation  

DOE Patents [OSTI]

Compositions and methods for chemical ligation are provided. Methods for nucleic acid sequencing, nucleic acid assembly and nucleic acid synthesis are also provided.

Church, George M.; Sismour, A. Michael

2013-07-09T23:59:59.000Z

280

Enhancing the DNA Patent Database  

SciTech Connect (OSTI)

Final Report on Award No. DE-FG0201ER63171 Principal Investigator: LeRoy B. Walters February 18, 2008 This project successfully completed its goal of surveying and reporting on the DNA patenting and licensing policies at 30 major U.S. academic institutions. The report of survey results was published in the January 2006 issue of Nature Biotechnology under the title “The Licensing of DNA Patents by US Academic Institutions: An Empirical Survey.” Lori Pressman was the lead author on this feature article. A PDF reprint of the article will be submitted to our Program Officer under separate cover. The project team has continued to update the DNA Patent Database on a weekly basis since the conclusion of the project. The database can be accessed at dnapatents.georgetown.edu. This database provides a valuable research tool for academic researchers, policymakers, and citizens. A report entitled Reaping the Benefits of Genomic and Proteomic Research: Intellectual Property Rights, Innovation, and Public Health was published in 2006 by the Committee on Intellectual Property Rights in Genomic and Protein Research and Innovation, Board on Science, Technology, and Economic Policy at the National Academies. The report was edited by Stephen A. Merrill and Anne-Marie Mazza. This report employed and then adapted the methodology developed by our research project and quoted our findings at several points. (The full report can be viewed online at the following URL: http://www.nap.edu/openbook.php?record_id=11487&page=R1). My colleagues and I are grateful for the research support of the ELSI program at the U.S. Department of Energy.

Walters, LeRoy B.

2008-02-18T23:59:59.000Z

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


281

Constrained Querying of Multimedia Databases  

E-Print Network [OSTI]

definitions using SQL and XML (MPEG-7 schema definitions). REFERENCES 1. “MPEG-7 applications document v.8.1.” ISO/IEC JTC1/SC29/WG11/M4839, MPEG99, July 1999. 2. “MPEG-7 requirements document v.10.” ISO/IEC JTC1/SC29/WG11/M4839N2996, MPEG99, Oct. 1999. 3. M...Constrained Querying of Multimedia Databases: Issues and Approaches Apostol (Paul) Natseva#3;y John R. Smithb Yuan-Chi Changb Chung-Sheng Lib Jeffrey S. Vittera aDepartment of Computer Science, Duke University, P.O. Box 90129, Durham, NC 27708...

Vitter, Jeffrey Scott; Natsev, Apostol; Smith, John R.; Chang, Yuan-Chi; Li, Chung-Sheng

2001-01-01T23:59:59.000Z

282

databases | netl.doe.gov  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE:1 First Use of Energy for All Purposes (Fuel and Nonfuel),Feet) Year Jan Feb Mar Apr MayAtmosphericNuclear SecurityTensile Strain Switched5 Industrial Carbon Capture and Storageconvert program | credarr.xlscyber |2databases

283

V-036: EMC Smarts Network Configuration Manager Database Authenticatio...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

36: EMC Smarts Network Configuration Manager Database Authentication Bypass Vulnerability V-036: EMC Smarts Network Configuration Manager Database Authentication Bypass...

284

CS 525: Advanced Database Organization Study of relational, semantic, and object-oriented data models and interfaces. Database management system  

E-Print Network [OSTI]

History of database management. Goals of database system development. Relational systems Data modelsCS 525: Advanced Database Organization Objectives Study of relational, semantic, and object-oriented data models and interfaces. Database management system techniques for query optimization, concurrency

Heller, Barbara

285

The Dartmouth Stellar Evolution Database  

E-Print Network [OSTI]

The ever-expanding depth and quality of photometric and spectroscopic observations of stellar populations increase the need for theoretical models in regions of age-composition parameter space that are largely unexplored at present. Stellar evolution models that employ the most advanced physics and cover a wide range of compositions are needed to extract the most information from current observations of both resolved and unresolved stellar populations. The Dartmouth Stellar Evolution Database is a collection of stellar evolution tracks and isochrones that spans a range of [Fe/H] from -2.5 to +0.5, [alpha/Fe] from -0.2 to +0.8 (for [Fe/H] 0), and initial He mass fractions from Y=0.245 to 0.40. Stellar evolution tracks were computed for masses between 0.1 and 4 Msun, allowing isochrones to be generated for ages as young as 250 Myr. For the range in masses where the core He flash occurs, separate He-burning tracks were computed starting from the zero age horizontal branch. The tracks and isochrones have been transformed to the observational plane in a variety of photometric systems including standard UBV(RI)c, Stromgren uvby, SDSS ugriz, 2MASS JHKs, and HST ACS-WFC and WFPC2. The Dartmouth Stellar Evolution Database is accessible through a website at http://stellar.dartmouth.edu/~models/ where all tracks, isochrones, and additional files can be downloaded.

Aaron Dotter; Brian Chaboyer; Darko Jevremovic; Veselin Kostov; E. Baron; J. W. Ferguson

2008-04-28T23:59:59.000Z

286

Nuclear Concrete Materials Database Phase I Development  

SciTech Connect (OSTI)

The FY 2011 accomplishments in Phase I development of the Nuclear Concrete Materials Database to support the Light Water Reactor Sustainability Program are summarized. The database has been developed using the ORNL materials database infrastructure established for the Gen IV Materials Handbook to achieve cost reduction and development efficiency. In this Phase I development, the database has been successfully designed and constructed to manage documents in the Portable Document Format generated from the Structural Materials Handbook that contains nuclear concrete materials data and related information. The completion of the Phase I database has established a solid foundation for Phase II development, in which a digital database will be designed and constructed to manage nuclear concrete materials data in various digitized formats to facilitate electronic and mathematical processing for analysis, modeling, and design applications.

Ren, Weiju [ORNL; Naus, Dan J [ORNL

2012-05-01T23:59:59.000Z

287

Concurrency control in heterogeneous distributed database systems  

E-Print Network [OSTI]

APPROACHES IN HDDBS . III. A Approaches Requiring Local DBMS Modihcations 17 19 III. B Approaches Without Local DBMS Modifications 22 IV A NEW APPROACH TO HDDBS CONCURRENCY CONTROL 30 IV. A The Concurrency Control Scheme 30 CIIA PTER Page IV. B... related to Database Systems in general which will be used consistently throughout this thesis. A Database system (DBS) consists of a set of dutiibiises (DB) which contain the data of interest and software, the database msnageinent system (DBMS), which...

Rahman, Md. Rezaur

1992-01-01T23:59:59.000Z

288

Graphical visualization of implemented storage databases  

SciTech Connect (OSTI)

The PC-program LANUC, developed from Admintec, supports a decentralized or centralized storage management of radioactive waste. It gives the storekeeper a graphical view of a storage area and its contents which are otherwise only represented in lists and databases. The storekeeper can plan any movements within the storage area and once they are confirmed, the data in the database are automatically altered. Any implemented database can be represented by simulating a human operator with a program.

Fischer, C.; Hamp, H.P. [Admintec GmbH, Pforzheim (Germany)

1993-12-31T23:59:59.000Z

289

Buildings Performance Database Analysis Tools | Department of...  

Broader source: Energy.gov (indexed) [DOE]

Save Consumers Billions Tools EnergyPlus Whole Building Energy Simulation OpenStudio Energy Simulation Application Suite Buildings Performance Database Building Energy...

290

Buildings Performance Database | Department of Energy  

Broader source: Energy.gov (indexed) [DOE]

Consumers Billions Tools EnergyPlus Whole Building Energy Simulation OpenStudio Energy Simulation Application Suite Buildings Performance Database Building Energy Software Tools...

291

Buildings Performance Database Recommend Data Fields  

Broader source: Energy.gov [DOE]

Buildings Performance Database Recommend Data Fields, from the U.S. Department of Energy's Office of Energy Efficiency and Renewable Energy.

292

X-RAY MICROBEAM SPEECH PRODUCTION DATABASE  

E-Print Network [OSTI]

X-RAY MICROBEAM SPEECH PRODUCTION DATABASE USER'S HANDBOOK Version 1.0 (June 1994) prepared by John . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 Chapter Two: XRMB History

293

A Database Index to Large Biological Sequences  

E-Print Network [OSTI]

Hunt,E. Atkinson,M.P. Irving,R.W. Proceedings of the 27th Conference on Very Large Databases pp 139-148 Morgan Kaufmann

Hunt, E.

294

Sandia Wind Turbine Loads Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The Sandia Wind Turbine Loads Database is divided into six files, each corresponding to approximately 16 years of simulation. The files are text files with data in columnar format. The 424MB zipped file containing six data files can be downloaded by the public. The files simulate 10-minute maximum loads for the NREL 5MW wind turbine. The details of the loads simulations can be found in the paper: “Decades of Wind Turbine Loads Simulations”, M. Barone, J. Paquette, B. Resor, and L. Manuel, AIAA2012-1288 (3.69MB PDF). Note that the site-average wind speed is 10 m/s (class I-B), not the 8.5 m/s reported in the paper.

295

Catalog of databases and reports  

SciTech Connect (OSTI)

This catalog provides information about the many reports and materials made available by the US Department of Energy`s (DOE`s) Global Change Research Program (GCRP) and the Carbon Dioxide Information Analysis Center (CDIAC). The catalog is divided into nine sections plus the author and title indexes: Section A--US Department of Energy Global Change Research Program Research Plans and Summaries; Section B--US Department of Energy Global Change Research Program Technical Reports; Section C--US Department of Energy Atmospheric Radiation Measurement (ARM) Program Reports; Section D--Other US Department of Energy Reports; Section E--CDIAC Reports; Section F--CDIAC Numeric Data and Computer Model Distribution; Section G--Other Databases Distributed by CDIAC; Section H--US Department of Agriculture Reports on Response of Vegetation to Carbon Dioxide; and Section I--Other Publications.

Burtis, M.D. [comp.

1997-04-01T23:59:59.000Z

296

Glycan fragment database: a database of PDB-based glycan 3D structures  

E-Print Network [OSTI]

The glycan fragment database (GFDB), freely available at http://www.glycanstructure.org, is a database of the glycosidic torsion angles derived from the glycan structures in the Protein Data Bank (PDB). Analogous to protein ...

Jo, Sunhwan; Im, Wonpil

2012-10-25T23:59:59.000Z

297

The Effect of Dye-Dye Interactions on the Spatial Resolution of Single-Molecule FRET Measurements in Nucleic Acids  

E-Print Network [OSTI]

The Effect of Dye-Dye Interactions on the Spatial Resolution of Single-Molecule FRET Measurements Engineering, Boston University, Boston, Massachusetts ABSTRACT We study the effect of dye-dye interactions-nm separation, provided that dye-dye quenching is accounted for. At these short separations, we find

298

Electronic structure and spectroscopy of nucleic acid bases: Ionization energies, ionization-induced structural changes, and photoelectron spectra  

SciTech Connect (OSTI)

We report high-level ab initio calculations and single-photon ionization mass spectrometry study of ionization of adenine (A), thymine (T), cytosine (C) and guanine (G). For thymine and adenine, only the lowest-energy tautomers were considered, whereas for cytosine and guanine we characterized five lowest-energy tautomeric forms. The first adiabatic and several vertical ionization energies were computed using equation-of-motion coupled-cluster method for ionization potentials with single and double substitutions. Equilibrium structures of the cationic ground states were characterized by DFT with the {omega}B97X-D functional. The ionization-induced geometry changes of the bases are consistent with the shapes of the corresponding molecular orbitals. For the lowest-energy tautomers, the magnitude of the structural relaxation decreases in the following series G > C > A > T, the respective relaxation energies being 0.41, 0.32, 0.25 and 0.20 eV. The computed adiabatic ionization energies (8.13, 8.89, 8.51-8.67 and 7.75-7.87 eV for A,T,C and G, respectively) agree well with the onsets of the photoionization efficiency (PIE) curves (8.20 {+-} 0.05, 8.95 {+-} 0.05, 8.60 {+-} 0.05 and 7.75 {+-} 0.05 eV). Vibrational progressions for the S{sub 0}-D{sub 0} vibronic bands computed within double-harmonic approximation with Duschinsky rotations are compared with previously reported experimental photoelectron spectra.

Bravaya, Ksenia B.; Kostko, Oleg; Dolgikh, Stanislav; Landau, Arie; Ahmed, Musahid; Krylov, Anna I.

2010-08-02T23:59:59.000Z

299

Thermodynamics and Enzymatic Polymerization of Artificial Metallo-Nucleic Acids AND Investigation of Duplex Formation between GAN and RNA  

E-Print Network [OSTI]

°C rt (92%). (c) DMTrCl, pyridine, rt (69%). (d) (iPr) 2 NP(Cl)OEtCN, (iPr) 2 NEt, CH 2 Cl 2 , rt (71%). Scheme 1. 7N,N-diisopropylehylamine ((iPr) 2 NEt) and 2-cyanoehtyl-N,N-

Kim, Eun Kyong

2011-01-01T23:59:59.000Z

300

Nucleic Acids Research, 1993, Vol. 21, No. 9 2247-2248 The nucleosome repeat length of Kluyveromyces lactis is  

E-Print Network [OSTI]

Sorbitol, 20 mM Pipes, 0.1 mM CaCl2, pH = 6.3), and resuspended in the remaining liquid. The suspensions were each added to 25 ml of Ficoll-PMSF solution (9% Ficoll 4000, 20 mM Pipes, 0.5 mM CaCl2, pH = 6

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


301

Discrimination of Alternative Spliced Isoforms by Real-Time PCR Using Locked Nucleic Acid (LNA) Substituted Primer  

E-Print Network [OSTI]

Determination of quantitative expression levels of alternatively spliced isoforms provides an important approach to the understanding of the functional significance of each isoform. Real-time PCR using exon junction ...

Wan, Guoqiang

302

2001 Oxford University Press Nucleic Acids Research, 2001, Vol. 29, No. 22 46634673 Importance of the conserved nucleotides around the  

E-Print Network [OSTI]

of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer- messenger RNA for protein nucleotide stretches 16­20 and 333­335 seriously impair protein tagging with only minor changes nucleotides next to the tRNA-like portion is proposed. Overall, the highly conserved nucleotides around the t

Paris-Sud XI, Université de

303

Nucleic Acids Research, 1994, Vol. 22, No. 11 1981 -1987 Interaction between the first and last nucleotides of  

E-Print Network [OSTI]

nucleotides of pre-mRNA introns is a determinant of 3' splice site selection in S.cerevisiae Guillaume be reactivated by a G to C substitution of the last intron nucleotide. These results demonstrate that the inter- action between the first and last intron nucleotides is a conserved feature of nuclear pre-mRNA splicing

Chanfreau, Guillaume

304

Array of nucleic acid probes on biological chips for diagnosis of HIV and methods of using the same  

DOE Patents [OSTI]

The invention provides an array of oligonucleotide probes immobilized on a solid support for analysis of a target sequence from a human immunodeficiency virus. The array comprises at least four sets of oligonucleotide probes 9 to 21 nucleotides in length. A first probe set has a probe corresponding to each nucleotide in a reference sequence from a human immunodeficiency virus. A probe is related to its corresponding nucleotide by being exactly complementary to a subsequence of the reference sequence that includes the corresponding nucleotide. Thus, each probe has a position, designated an interrogation position, that is occupied by a complementary nucleotide to the corresponding nucleotide. The three additional probe sets each have a corresponding probe for each probe in the first probe set. Thus, for each nucleotide in the reference sequence, there are four corresponding probes, one from each of the probe sets. The three corresponding probes in the three additional probe sets are identical to the corresponding probe from the first probe or a subsequence thereof that includes the interrogation position, except that the interrogation position is occupied by a different nucleotide in each of the four corresponding probes.

Chee, Mark (Palo Alto, CA); Gingeras, Thomas R. (Santa Clara, CA); Fodor, Stephen P. A. (Palo Alto, CA); Hubble, Earl A. (Mountain View, CA); Morris, MacDonald S. (San Jose, CA)

1999-01-19T23:59:59.000Z

305

1997 Oxford University Press49945002 Nucleic Acids Research, 1997, Vol. 25, No. 24 Information analysis of Fis binding sites  

E-Print Network [OSTI]

analysis of Fis binding sites Paul N. Hengen1, Stacy L. Bartram1,2,+, Lisa E. Stewart1 and Thomas D 30, 1997 ABSTRACT Originally discovered in the bacteriophage Mu DNA inversion system gin, Fis (Factor for Fis to locate its binding sites, we collected a set of 60 experimentally defined wild-type Fis DNA

Schneider, Thomas D.

306

1997 Oxford University Press 13391346Nucleic Acids Research, 1997, Vol. 25, No. 7 Mechanisms of triplex-caused polymerization arrest  

E-Print Network [OSTI]

of triplex-caused polymerization arrest Andrey S. Krasilnikov1,2, Igor G. Panyutin3, George M. Samadashwily1/purine/purine triplexes are known to inhibit DNA polymerization. Here we have studied the mech- anisms of this inhibition temperatures and ambient conditions make them a barrier to polymerization. INTRODUCTION During the last decade

Mirkin, Sergei

307

1996 Oxford University Press 713720Nucleic Acids Research, 1996, Vol. 24, No. 4 Atomic force microscopy of long and short  

E-Print Network [OSTI]

of DNA can be reliably imaged and identified and also what substrates and methods of sample preparation technique for observing DNA. The AFM can image conformations of DNA molecules (3­5), nucleosome Corporation; Wood Dale, IL) and cleaved with tape immediately before use. Silicon. Oxidized silicon substrates

Hansma, Helen

308

Activation of nucleic acid-sensing Toll-like receptors requires cleavage by endolysosomal proteases: a mechanism to avoid autoimmunity  

E-Print Network [OSTI]

receptor DC: dendritic cell pDC: plasmacytoid dendritic celltaken up by plasmacytoid DCs (pDC) and elicit large amountsare also components of the pDC-MyD88 signaling complex (

Ewald, Sarah Elisabeth

2010-01-01T23:59:59.000Z

309

Thermodynamics and Enzymatic Polymerization of Artificial Metallo-Nucleic Acids AND Investigation of Duplex Formation between GAN and RNA  

E-Print Network [OSTI]

cells on a Varian Cary 500 UV-Vis spectrophotometer equipped with a Peltiercell on a Varian Cary 500 UV-Vis spectrophotometer equipped with a Peltier

Kim, Eun Kyong

2011-01-01T23:59:59.000Z

310

Electrical Detection of Nucleic Acid Amplification Using an On-Chip Quasi-Reference Electrode and a PVC REFET  

E-Print Network [OSTI]

and a PVC REFET Eric Salm,, Yu Zhong,,§ Bobby Reddy, Jr.,,§ Carlos Duarte-Guevara,,§ Vikhram Swaminathan that utilizes a platinum QRE to establish a pH-sensitive fluid gate potential and a PVC membrane REFET to enable

Bashir, Rashid

311

U.S. LIFE CYCLE INVENTORY DATABASE Goals of the U.S. LCI Database Project  

E-Print Network [OSTI]

U.S. LIFE CYCLE INVENTORY DATABASE ROADMAP rsed e #12;Goals of the U.S. LCI Database Project. Vision Statement The U.S. Life Cycle Inventory Database will be the recognized source of U.S.-based, quality, transparent life cycle inventory data and will become an integral part of the rapidly expanding

312

Nuclear Databases: National Resource Nuclear databases consists of carefully organized scientific  

E-Print Network [OSTI]

Nuclear Databases: National Resource Nuclear databases consists of carefully organized scientific information that has been gathered over 50 years of low-energy nuclear physics research worldwide. These powerful databases have enormous value and they represent a genuine national resource. Six core nuclear

Ohta, Shigemi

313

Database, Spatial Spatial databases are the foundation for computer-based applications involving spatially  

E-Print Network [OSTI]

managed using a particular type of software called a database management system (DBMS) that allows, leading to spatio-temporal databases when geometric evolutions are supported. Spatial databases can be implemented in a GIS, in a computer-assisted design (CAD) system coupled with a DBMS, in a universal server

314

Database Management Systems 3ed, R. Ramakrishnan and J. Gehrke 1 Database Management Systems  

E-Print Network [OSTI]

What Is a DBMS? A database is a collection of data. Models real-world enterprise, e.g. university System (DBMS) is a software package designed to store and manage databases. #12;Database Management Systems 3ed, R. Ramakrishnan and J. Gehrke 3 Why we need DBMS Huge amount of data is available. Users need

Li, Yanjun "Lisa"

315

1. Integrated Database 2. Boundary Analysis  

E-Print Network [OSTI]

1. Integrated Database 2. Boundary Analysis Melinda Laituri Colorado State University June 2011 #12 data Model package/ Analysis technique #12;Establishing a Database What are our scales? What are our units of analysis? What commonality do we have? What is the nature of our data? What

316

Evolution towards, in, and beyond Object Databases  

E-Print Network [OSTI]

Evolution towards, in, and beyond Object Databases Marc H. Scholl and Markus Tresch Faculty ``evolution'' in the database arena. This paper tries to categorize some of these into a unique framework of ``external services'' to enrich DBMS functionalities. The following are presented in more detail: first, we

Scholl, Marc H.

317

REGULAR ENTRY IN ENCYCLOPEDIA OF DATABASE SYSTEMS  

E-Print Network [OSTI]

network. In a central DBMS the data is managed by one node whereas in a distributed DBMS the data is managed by several nodes. A distributed DBMS is a database manager consisting of several nodes distributed in the network. In a regular distributed DBMS it is up to the database administrator to manually specify how data

Risch, Tore

318

DRAFT Chapter 1 Introduction to spatial databases  

E-Print Network [OSTI]

. Today, data is housed in and managed via a database management system (DBMS). Databases and the software which manages them (DBMS) are the silent success story of the information age. They have slowly role of a DBMS has been that of a simple but e#11;ective warehouse of business and accounting data

Shekhar, Shashi

319

CALIFORNIA ENERGY Small HVAC Database Of Monitored  

E-Print Network [OSTI]

CALIFORNIA ENERGY COMMISSION Small HVAC Database Of Monitored Information Database of Compiled of the Integrated Design of Small Commercial HVAC Systems research project. The reports are a result of funding: Productivity and Interior Environments Integrated Design of Large Commercial HVAC Systems Integrated Design

320

Publication Kind Codes in STN Patent Databases  

E-Print Network [OSTI]

Publication Kind Codes in STN Patent Databases Dokumentenart-Codes in STN-Patentdatenbanken Imprint Abstracts (CAPLUS), Chemical Abstracts (CAPLUS), Derwent World Patents Index (DWPI), and Derwent World Patents Index (DWPI)und INPADOCDB INPADOCDB international patent databases, together with a short

Hoffmann, Armin

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


321

Proposal for a High Energy Nuclear Database  

E-Print Network [OSTI]

We propose to develop a high-energy heavy-ion experimental database and make it accessible to the scientific community through an on-line interface. This database will be searchable and cross-indexed with relevant publications, including published detector descriptions. Since this database will be a community resource, it requires the high-energy nuclear physics community's financial and manpower support. This database should eventually contain all published data from Bevalac, AGS and SPS to RHIC and LHC energies, proton-proton to nucleus-nucleus collisions as well as other relevant systems, and all measured observables. Such a database would have tremendous scientific payoff as it makes systematic studies easier and allows simpler benchmarking of theoretical models to a broad range of old and new experiments. Furthermore, there is a growing need for compilations of high-energy nuclear data for applications including stockpile stewardship, technology development for inertial confinement fusion and target and ...

Vogt, D A B R

2005-01-01T23:59:59.000Z

322

Evolution of the Configuration Database Design  

SciTech Connect (OSTI)

The BABAR experiment at SLAC successfully collects physics data since 1999. One of the major parts of its on-line system is the configuration database which provides other parts of the system with the configuration data necessary for data taking. Originally the configuration database was implemented in the Objectivity/DB ODBMS. Recently BABAR performed a successful migration of its event store from Objectivity/DB to ROOT and this prompted a complete phase-out of the Objectivity/DB in all other BABAR databases. It required the complete redesign of the configuration database to hide any implementation details and to support multiple storage technologies. In this paper we describe the process of the migration of the configuration database, its new design, implementation strategy and details.

Salnikov, A

2006-04-19T23:59:59.000Z

323

Collod-Broud & Boileau The Marfan Mutation Database  

E-Print Network [OSTI]

Collod-Béroud & Boileau The Marfan Mutation Database Gwenaëlle Collod-Béroud1 and Catherine Boileau created, in 1995, a mutation database named "UMD-FBN1". The database follows the guidelines on mutation databases of the Hugo Mutation Database Initiative and gives access to a software package that provides

Paris-Sud XI, Université de

324

National Spill Test Technology Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

Western Research Institute established, and ACRC continues to maintain, the National Spill Technology database to provide support to the Liquified Gaseous Fuels Spill Test Facility (now called the National HAZMAT Spill Center) as directed by Congress in Section 118(n) of the Superfund Amendments and Reauthorization Act of 1986 (SARA). The Albany County Research Corporation (ACRC) was established to make publicly funded data developed from research projects available to benefit public safety. The founders since 1987 have been investigating the behavior of toxic chemicals that are deliberately or accidentally spilled, educating emergency response organizations, and maintaining funding to conduct the research at the DOEÆs HAZMAT Spill Center (HSC) located on the Nevada Test Site. ACRC also supports DOE in collaborative research and development efforts mandated by Congress in the Clean Air Act Amendments. The data files are results of spill tests conducted at various times by the Silicones Environmental Health and Safety Council (SEHSC) and DOE, ANSUL, Dow Chemical, the Center for Chemical Process Safety (CCPS) and DOE, Lawrence Livermore National Laboratory (LLNL), OSHA, and DOT; DuPont, and the Western Research Institute (WRI), Desert Research Institute (DRI), and EPA. Each test data page contains one executable file for each test in the test series as well as a file named DOC.EXE that contains information documenting the test series. These executable files are actually self-extracting zip files that, when executed, create one or more comma separated value (CSV) text files containing the actual test data or other test information.

Sheesley, David (Western Research Institute)

325

The volatile compound BinBase mass spectral database  

E-Print Network [OSTI]

B, Eriksson R: SuperScent-a database of flavors and scents.Sayaed AM: The Pherobase: Database of Insect Pheromones andA public study design database for metabolomics projects.

Skogerson, Kirsten; Wohlgemuth, Gert; Barupal, Dinesh K; Fiehn, Oliver

2011-01-01T23:59:59.000Z

326

DATE A DAtabase of TIM Barrel 2.1 Introduction......................................................................................  

E-Print Network [OSTI]

24 DATE ­ A DAtabase of TIM Barrel Enzymes 2.1 Introduction...................................................................................... 2.2 Objective and salient features of the database .................................... 2.2.1 Choice on the database............................................... 2.4 Features

Babu, M. Madan

327

Proposed database model and file structures for arthropod collection management  

E-Print Network [OSTI]

Proposed database model and file structures for arthropod collection management Ronald A for taxonomic analysis or behavioral, physiological, and ecological information. The database model described how specific computerization projects can be related to each other. The proposed database model

Mathis, Wayne N.

328

Database Structure and Visualization Software for Microbial Physiology Data INTRODUCTION  

E-Print Network [OSTI]

Database Structure and Visualization Software for Microbial Physiology Data INTRODUCTION Nicholas includes database input. Other related information can be entered through the website. The relational structure of the database is responsible for associating related data · A structured query is sent

329

Visiting Database Programmer/Application Developer School of Chemical Sciences  

E-Print Network [OSTI]

Visiting Database Programmer/Application Developer School of Chemical Sciences University professional as Visiting Database Programmer/Application Developer. This position reports to the Information administrative database environment (specifically Oracle and SQL Server). This is a visiting position, but may

Zimmerman, Steven C.

330

SPATIAL DATABASE MODELING WITH PICTOGRAMMIC LANGUAGES Yvan Bdard, Suzie Larrive  

E-Print Network [OSTI]

SPATIAL DATABASE MODELING WITH PICTOGRAMMIC LANGUAGES Yvan Bédard, Suzie Larrivée Dept of Geomatics Sciences Centre for Research in Geomatics Canada NSERC Industrial Research Chair in Geospatial Databases language extension, Spatial data modeling, Perceptory pictograms. DEFINITION "Spatial databases" consist

331

US Department of Energy Chernobyl Database  

SciTech Connect (OSTI)

The Chernobyl Database project is developing and maintaining an information to provide researchers with data and resource materials relating to the Chernobyl nuclear accident of April 1986. The system is the official United States repository for Chernobyl data. The system includes a collection of Chernobyl-related documents, a database of bibliographic references, and a collection of radiological measurements records. In addition, projects have been developed to make the resources more accessible and easy to use. These products include a personal-computer-based bibliographic search system (ChernoLit{trademark}), two printed bibliographies, and a personal- computer-based radiological measurements database system (ChernoDat).

Kennedy, R.A.; Mahaffey, J.A.; Smith, S.K.; Carr, F. Jr.

1992-05-01T23:59:59.000Z

332

Attributes for Causal Inference in Electronic Healthcare Databases Jenna Reps, Jonathan M. Garibaldi,  

E-Print Network [OSTI]

Attributes for Causal Inference in Electronic Healthcare Databases Jenna Reps, Jonathan M Spontaneous Reporting System (SRS) databases and Electronic Healthcare Databases (EHDs) are the databases

Aickelin, Uwe

333

Human retroviruses and AIDS 1994  

SciTech Connect (OSTI)

This compendium, including accompanying floppy diskettes, is the result of an effort to compile and rapidly publish all relevant molecular data concerning the human immunodeficiency viruses (HIV) and related retroviruses. The scope of the compendium and database is best summarized by the five parts it comprises: (I) Nucleic Acid Alignments and Sequences; (II) Amino Acid Alignments; (III) Analysis; (IV) Related Sequences; (V) Database communications.

Myers, G.; Korber, B. [Los Alamos National Lab., NM (United States); Wain-Hobson, S.; Jeang, Kuan-Teh; Henderson, L.E.; Pavlakis, G.N. [eds.

1995-01-01T23:59:59.000Z

334

EERE Project Management Center Database PIA, The Office of Energy...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

EERE Project Management Center Database PIA, The Office of Energy Efficiency and Renewable Energy (EERE) EERE Project Management Center Database PIA, The Office of Energy...

335

An Infrared Spectral Database for Detection of Gases Emitted...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Database for Detection of Gases Emitted by Biomass Burning. An Infrared Spectral Database for Detection of Gases Emitted by Biomass Burning. Abstract: We report the construction of...

336

automated database mediation: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

of database approach + Database Management System (DBMS) + Advantages of Using DBMS + Workers Adam, Salah 239 Mediated Homogenization Quantum Physics (arXiv) Summary:...

337

AVTA: 2012 Chevrolet Volt PHEV Downloadable Dynamometer Database...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

Chevrolet Volt PHEV Downloadable Dynamometer Database Reports AVTA: 2012 Chevrolet Volt PHEV Downloadable Dynamometer Database Reports The Vehicle Technologies Office's Advanced...

338

AVTA: 2012 Toyota Prius PHEV Downloadable Dynamometer Database...  

Energy Savers [EERE]

Toyota Prius PHEV Downloadable Dynamometer Database Reports AVTA: 2012 Toyota Prius PHEV Downloadable Dynamometer Database Reports The Vehicle Technologies Office's Advanced...

339

T-614: Cisco Unified Communications Manager Database Security...  

Energy Savers [EERE]

614: Cisco Unified Communications Manager Database Security Vulnerability T-614: Cisco Unified Communications Manager Database Security Vulnerability May 3, 2011 - 7:37am Addthis...

340

AVTA: 2010 Honda CR-Z Hybrid Downloadable Dynamometer Database...  

Energy Savers [EERE]

CR-Z Hybrid Downloadable Dynamometer Database Reports AVTA: 2010 Honda CR-Z Hybrid Downloadable Dynamometer Database Reports The Vehicle Technologies Office's Advanced Vehicle...

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


341

Database (Report) of U.S. CHP Installations Incorporating Thermal...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

Database (Report) of U.S. CHP Installations Incorporating Thermal Energy Storage (TES) andor Turbine Inlet Cooling (TIC), 2004 Database (Report) of U.S. CHP Installations...

342

Heat Flow Database Expansion for NGDS Data Development, Collection...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

Heat Flow Database Expansion for NGDS Data Development, Collection and Maintenance (SMU) Heat Flow Database Expansion for NGDS Data Development, Collection and Maintenance (SMU)...

343

Fault-tolerant distributed transactions for partitioned OLTP databases  

E-Print Network [OSTI]

This thesis presents Dtxn, a fault-tolerant distributed transaction system designed specifically for building online transaction processing (OLTP) databases. Databases have traditionally been designed as general purpose ...

Jones, Evan P. C. (Evan Philip Charles), 1981-

2012-01-01T23:59:59.000Z

344

The Tariff Analysis Project: A Database and Analysis Platform...  

Open Energy Info (EERE)

Tariff Analysis Project: A Database and Analysis Platform for Electricity Tariffs Jump to: navigation, search Tool Summary LAUNCH TOOL Name: The Tariff Analysis Project: A Database...

345

EM Develops Database for Efficient Solutions to Nuclear Cleanup...  

Broader source: Energy.gov (indexed) [DOE]

illustrate the benefits of the database. EM also shared the database with the UK's Nuclear Decommissioning Authority and the Canadian Nuclear Laboratories to identify remote...

346

The LBNL Water Heater Retail Price Database  

E-Print Network [OSTI]

Olson, and Stuart Chaitkin (LBNL). We also want to thank ourand Mithra Moezzi, also of LBNL. This work was supported byLBNL – 44749 The LBNL Water Heater Retail Price Database

Lekov, Alex; Glover, Julie; Lutz, Jim

2000-01-01T23:59:59.000Z

347

IFDB: Decentralized Information Flow Control for Databases  

E-Print Network [OSTI]

Numerous sensitive databases are breached every year due to bugs in applications. These applications typically handle data for many users, and consequently, they have access to large amounts of confidential information.

Schultz, David

348

6.893 Database Systems, Fall 2004  

E-Print Network [OSTI]

This course is designed to introduce graduate students to the foundations of database systems, focusing on basics such as the relational algebra and data model, query optimization, query processing, and transactions. This ...

Madden, Samuel R. (Samuel Ross), 1976-

349

GWIDD: Genome-wide protein docking database  

E-Print Network [OSTI]

Structural information on interacting proteins is important for understanding life processes at the molecular level. Genome-wide docking database is an integrated resource for structural studies of protein–protein interactions on the genome scale...

Kundrotas, Petras J.; Zhu, Zhengwei; Vasker, Ilya A.

2009-11-09T23:59:59.000Z

350

Enabling Geographical Queries to a Botanical Database   

E-Print Network [OSTI]

Conservation of the lowland savanna ecosystem in Belize Project (Defra 17-022) has created a database of savanna plant collections in the country. Some of the collections have accurate positional coordinates measured by GPS devices while the others...

Sato, Go

2011-11-25T23:59:59.000Z

351

Energy Citations Database (ECD) - Alerts Comments  

Office of Scientific and Technical Information (OSTI)

Alerts Comments If you have a question about Energy Citations Database Alerts, we recommend you check frequently asked questions. If your question still has not been answered or if...

352

Proposal for a High Energy Nuclear Database  

E-Print Network [OSTI]

Proposal for a High Energy Nuclear Database David A. Brown 1it requires the high-energy nuclear physics com- munity’s ?compilations of high-energy nuclear data for applications

Brown, David A.; Vogt, Ramona

2005-01-01T23:59:59.000Z

353

Towards Privacy Preserving of Forensic DNA Databases  

E-Print Network [OSTI]

Protecting privacy of individuals is critical for forensic genetics. In a kinship/identity testing, related DNA profiles between user's query and the DNA database need to be extracted. However, unrelated profiles cannot be revealed to each other...

Liu, Sanmin

2012-02-14T23:59:59.000Z

354

Concentrations of indoor pollutants database: User's manual  

SciTech Connect (OSTI)

This manual describes the computer-based database on indoor air pollutants. This comprehensive database alloys helps utility personnel perform rapid searches on literature related to indoor air pollutants. Besides general information, it provides guidance for finding specific information on concentrations of indoor air pollutants. The manual includes information on installing and using the database as well as a tutorial to assist the user in becoming familiar with the procedures involved in doing bibliographic and summary section searches. The manual demonstrates how to search for information by going through a series of questions that provide search parameters such as pollutants type, year, building type, keywords (from a specific list), country, geographic region, author's last name, and title. As more and more parameters are specified, the list of references found in the data search becomes smaller and more specific to the user's needs. Appendixes list types of information that can be input into the database when making a request. The CIP database allows individual utilities to obtain information on indoor air quality based on building types and other factors in their own service territory. This information is useful for utilities with concerns about indoor air quality and the control of indoor air pollutants. The CIP database itself is distributed by the Electric Power Software Center and runs on IBM PC-compatible computers.

Not Available

1992-05-01T23:59:59.000Z

355

Development of the downhole dynamometer database  

SciTech Connect (OSTI)

The Downhole Dynamometer Database is a compilation of test data collected with a set of five downhole tools built by Albert Engineering under contract to Sandia National Laboratories. The downhole dynamometer tools are memory tools deployed in the sucker rod string with sensors to measure pressure, temperature, load, and acceleration. The acceleration data is processed to yield position, so that a load vs. position dynagraph can be generated using data collected downhole. With five tools in the hole at one time, all measured data and computed dynagraphs from five different positions in the rod string are available. The purpose of the Database is to provide industry with a complete and high quality measurement of downhole sucker rod pumping dynamics. To facilitate use of the database, Sandia has developed a Microsoft Windows-based interface that functions as a visualizer and browser to the more than 40 MBytes of data. The interface also includes a data export feature to allow users to extract data from the database for use in their own programs. This paper includes a description of the downhole dynamometer tools, data collection program, database content, and a few illustrations of the data contained in the downhole dynamometer database.

Waggoner, J.R.; Mansure, A.

1997-02-01T23:59:59.000Z

356

Proposal for a High Energy Nuclear Database  

SciTech Connect (OSTI)

We propose to develop a high-energy heavy-ion experimental database and make it accessible to the scientific community through an on-line interface. This database will be searchable and cross-indexed with relevant publications, including published detector descriptions. Since this database will be a community resource, it requires the high-energy nuclear physics community's financial and manpower support. This database should eventually contain all published data from Bevalac and AGS to RHIC to CERN-LHC energies, proton-proton to nucleus-nucleus collisions as well as other relevant systems, and all measured observables. Such a database would have tremendous scientific payoff as it makes systematic studies easier and allows simpler benchmarking of theoretical models to a broad range of old and new experiments. Furthermore, there is a growing need for compilations of high-energy nuclear data for applications including stockpile stewardship, technology development for inertial confinement fusion and target and source development for upcoming facilities such as the Next Linear Collider. To enhance the utility of this database, we propose periodically performing evaluations of the data and summarizing the results in topical reviews.

Brown, David A.; Vogt, Ramona

2005-03-31T23:59:59.000Z

357

Managing and Querying Transaction-time Databases under Schema Evolution  

E-Print Network [OSTI]

problem of managing the history of database in- formation is now made more urgent and complex by fast evolution history. 1. INTRODUCTION The ability of archiving past database information and supporting when it comes to preservation of the database history. Converting the old database to a new one after

Zaniolo, Carlo

358

Triggers on Database Histories A. Prasad Sistla Ouri Wolfson  

E-Print Network [OSTI]

Triggers on Database Histories A. Prasad Sistla Ouri Wolfson Department of Electrical Engineering of the database state over time (i.e. the database history). For example, in securities trading, the system may to the database history. The following temporal trigger is one such example--- the value of attribute A increases

Wolfson, Ouri E.

359

Database System Concepts, 5th Ed. Silberschatz, Korth and Sudarshan  

E-Print Network [OSTI]

Overall Structure History of Database Systems #12;©Silberschatz, Korth and Sudarshan1.3Database SystemDatabase System Concepts, 5th Ed. ©Silberschatz, Korth and Sudarshan See www, Korth and Sudarshan1.2Database System Concepts - 5th Edition, May 23, 2005 Chapter 1: Introduction

Dragan, Feodor F.

360

MARS CLIMATE DATABASE v5.1 USER MANUAL  

E-Print Network [OSTI]

MARS CLIMATE DATABASE v5.1 USER MANUAL (ESTEC Contract 11369/95/NL/JG "Mars Climate Database for version 5.1 of the Mars Climate Database (MCD) de- veloped by LMD (Paris), AOPP (Oxford), Dept. Physics and the Centre National d'Etudes Spatiales. This is a database of atmospheric statistics compiled from Global Cli

Spiga, Aymeric

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


361

October 6, 1997 ITER L-Mode Con nement Database  

E-Print Network [OSTI]

October 6, 1997 ITER L-Mode Con nement Database S.M. Kaye and the ITER Con nement Database Working Group Abstract This paper describes the content of an L-mode database that has been compiled with data, and Tore-Supra. The database consists of a total of 2938 entries, 1881 of which are in the L-phase while

362

Data Preparation Process for the Buildings Performance Database  

E-Print Network [OSTI]

LBNL-6724E Data Preparation Process for the Buildings Performance Database Claudine Y. Custodio Performance Database (BPD) includes empirically measured data from a variety of data sources with varying data quality within the database and to ensure that all database entries have sufficient data

363

A Database of Invariant Rings Gregor Kemper, Elmar K  

E-Print Network [OSTI]

A Database of Invariant Rings Gregor Kemper, Elmar K Ë? ording, Gunter Malle, B. Heinrich Matzat, Denis Vogel, and Gabor Wiese CONTENTS 1. Introduction 2. Concepts of the Database 3. An Example Session/8­2 (``Invariantentheorie endlicher Gruppen''). We announce the creation of a database of invariant rings. This database

Malle, Gunter

364

Database System Concepts, 5th Ed. Silberschatz, Korth and Sudarshan  

E-Print Network [OSTI]

Database System Concepts, 5th Ed. ©Silberschatz, Korth and Sudarshan See www.db-book.com for conditions on re-use Chapter 7: Relational Database DesignChapter 7: Relational Database Design #12;©Silberschatz, Korth and Sudarshan7.2Database System Concepts - 5th Edition, Oct 5, 2006 Chapter 7: Relational

Dragan, Feodor F.

365

Insights from the downhole dynamometer database  

SciTech Connect (OSTI)

The Downhole Dynamometer Database is a compilation of test data collected with a set of five downhole tools built by Albert Engineering under contract to Sandia National Laboratories. The downhole dynamometer tools are memory tools deployed in the sucker rod string with sensors to measure pressure, temperature, load, and acceleration. The acceleration data is processed to yield position, so that a load vs. position dynagraph can be generated using data collected downhole. With five tools in the hole at one time, all measured data and computed dynagraphs from five different positions in the rod string are available. The purpose of the Database is to provide industry with a complete and high quality measurement of downhole sucker rod pumping dynamics. To facilitate use of the database, Sandia has developed a Microsoft Windows-based interface that functions as a visualizer and browser to the more than 40 MBytes of data. The interface also includes a data export feature to allow users to extract data from the database for use in their own programs. Following a brief description of the downhole dynamometer tools, data collection program, and database content, this paper will illustrate a few of the interesting and unique insights gained from the downhole data.

Waggoner, J.R.

1997-03-01T23:59:59.000Z

366

March 23, 2008 Databases: Practical DB Design 1 Practical Database Design  

E-Print Network [OSTI]

approach towards development of information system, called, Information System Development Life Cycle. #12 of Information Systems in Organizations + Why Organizations Use DB Systems + Information System Life Cycle System Life Cycle ... Database DBMS Users Users #12;March 23, 2008 Databases: Practical DB Design 8

Adam, Salah

367

A Common Database Interface (DBI) R-Databases Special Interest Group  

E-Print Network [OSTI]

) and database management systems (DBMS). The interface defines a small set of classes and methods similar;2 Introduction The database interface (DBI) separates the connectivity to the DBMS into a "front-end" and a "back-end". Applications use only the exposed "front-end" API. The facilities that communicate with specific DBMS (Oracle

Bain, Mike

368

ITER L-Mode Confinement Database  

SciTech Connect (OSTI)

This paper describes the content of an L-mode database that has been compiled with data from Alcator C-Mod, ASDEX, DIII, DIII-D, FTU, JET, JFT-2M, JT-60, PBX-M, PDX, T-10, TEXTOR, TFTR, and Tore-Supra. The database consists of a total of 2938 entries, 1881 of which are in the L-phase while 922 are ohmically heated (OH) only. Each entry contains up to 95 descriptive parameters, including global and kinetic information, machine conditioning, and configuration. The paper presents a description of the database and the variables contained therein, and it also presents global and thermal scalings along with predictions for ITER. The L-mode thermal confinement time scaling was determined from a subset of 1312 entries for which the thermal confinement time scaling was provided.

S.M. Kaye and the ITER Confinement Database Working Group

1997-10-01T23:59:59.000Z

369

The JANA Calibrations and Conditions Database API  

SciTech Connect (OSTI)

Calibrations and conditions databases can be accessed from within the JANA Event Processing framework through the API defined in its JCalibration base class. The API is designed to support everything from databases, to web services to flat files for the backend. A Web Service backend using the gSOAP toolkit has been implemented which is particularly interesting since it addresses many modern cybersecurity issues including support for SSL. The API allows constants to be retrieved through a single line of C++ code with most of the context, including the transport mechanism, being implied by the run currently being analyzed and the environment relieving developers from implementing such details.

David Lawrence

2010-07-01T23:59:59.000Z

370

Lessons Learned From Developing Reactor Pressure Vessel Steel Embrittlement Database  

SciTech Connect (OSTI)

Materials behaviors caused by neutron irradiation under fission and/or fusion environments can be little understood without practical examination. Easily accessible material information system with large material database using effective computers is necessary for design of nuclear materials and analyses or simulations of the phenomena. The developed Embrittlement Data Base (EDB) at ORNL is this comprehensive collection of data. EDB database contains power reactor pressure vessel surveillance data, the material test reactor data, foreign reactor data (through bilateral agreements authorized by NRC), and the fracture toughness data. The lessons learned from building EDB program and the associated database management activity regarding Material Database Design Methodology, Architecture and the Embedded QA Protocol are described in this report. The development of IAEA International Database on Reactor Pressure Vessel Materials (IDRPVM) and the comparison of EDB database and IAEA IDRPVM database are provided in the report. The recommended database QA protocol and database infrastructure are also stated in the report.

Wang, Jy-An John [ORNL

2010-08-01T23:59:59.000Z

371

Qunits: queried units in database search  

E-Print Network [OSTI]

Keyword search against structured databases has become a popular topic of investigation, since many users find structured queries too hard to express, and enjoy the freedom of a ``Google-like'' query box into which search terms can be entered. Attempts to address this problem face a fundamental dilemma. Database querying is based on the logic of predicate evaluation, with a precisely defined answer set for a given query. On the other hand, in an information retrieval approach, ranked query results have long been accepted as far superior to results based on boolean query evaluation. As a consequence, when keyword queries are attempted against databases, relatively ad-hoc ranking mechanisms are invented (if ranking is used at all), and there is little leverage from the large body of IR literature regarding how to rank query results. Our proposal is to create a clear separation between ranking and database querying. This divides the problem into two parts, and allows us to address these separately. The first tas...

Nandi, Arnab

2009-01-01T23:59:59.000Z

372

CEBAF Large Acceptance Spectrometer (CLAS) Physics Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

A username and password are required to access and search the entire database. However, the Overview page provides links to detailed data pages for each of the experiments available for public access. There are many experiments with data that the public can freely access.

373

Capturing Database Transformations for Big Data Analytics  

E-Print Network [OSTI]

of Houston DBMS #12;Organization · Introduction · Classification · Program · Case Study · Conclusions DBMS Transformations to Build Data Sets for Data Mining, Data & Knowledge Engineering (DKE), 2014, Elsevier. DBMS #12 for this project might remain in the database, using resources. DBMS #12;Motivation: Saving Work · Different users

Ordonez, Carlos

374

A Database in Every Sensor Nicolas Tsiftes  

E-Print Network [OSTI]

a database management system (DBMS), provid- ing a rich query interface to the flash storage of the node, we present Antelope, a complete DBMS for resource-constrained sen- sor devices, and a new flash indexing method called Max- Heap. Antelope, which to the best of our knowledge is the first DBMS

Dunkels, Adam

375

Knowledge Discovery in Spatial Databases Martin Ester  

E-Print Network [OSTI]

and their interactions with each other. Most companies, governmental agencies and scientific organizations use DBMS with ex­ isting DBMS. Thus, the second goal is to propose methods of efficiently supporting spatial data mining algorithms by a DBMS. Our approach centers around a new set of database primitives for mining

Ester, Martin

376

WORKLOAD ADAPTATION IN AUTONOMIC DATABASE MANAGEMENT SYSTEMS  

E-Print Network [OSTI]

in Autonomic DBMSs", Proceedings of the 2nd International Workshop on Self-Managing Database Systems (SMDB 2007 to meet its Service Level Objectives (SLOs). It is a challenge to adapt multiple workloads with complex scheduler that performs workload adaptation in a DBMS, as the test bed to prove the effectiveness

377

Exam revision Database Systems Lecture 18  

E-Print Network [OSTI]

revision Example (coursework 5) · {Film} {Certificate} is a non-trivial functional dependency · {Cinema(A,B,C), candidate keys (A,B) and (A,C), fd B C. #12;Exam revision Example (coursework 5) · Relation ListingExam revision Database Systems Lecture 18 Natasha Alechina #12;Exam revision In This Lecture · Exam

Alechina, Natasha

378

Exam revision Database Systems Lecture 18  

E-Print Network [OSTI]

,B) and (A,C), fd B C. #12;3 Exam revision Example (coursework 5) · Relation Listing is not in 2NF because1 Exam revision Database Systems Lecture 18 Natasha Alechina Exam revision In This Lecture · Exam format · Main topics · How to revise Exam revision Exam format · Answer three questions out of five

Alechina, Natasha

379

Hypercat : A Database for extragalactic astronomy  

E-Print Network [OSTI]

The Hypercat Database is developed at Observatoire de Lyon and is distributed on the WEB through different mirrors in Europe. The goal of Hypercat is to gather data necessary for studying the evolution of galaxies (dynamics and stellar contains) and particularly for providing a z=0 reference for these studies.

Ph. Prugniel; G. Maubon

1999-10-01T23:59:59.000Z

380

Interactive Database Access with Statistics and Graphics  

E-Print Network [OSTI]

DbAccess The Manual Interactive Database Access with Statistics and Graphics Version 2.1.1 D. M and graphical needs of NSTX Physicists. Flexible views and joins are possible, including options for complex SQL General Atomics (GA Plot Objects) adds extensive graphical and interactive capabilities (and documentation

Princeton Plasma Physics Laboratory

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


381

Community Connections Database (CCDB)Community Connections Database (CCDB) Instructions for Students (CSL-4S)Instructions for Students (CSL-4S)  

E-Print Network [OSTI]

Community Connections Database (CCDB)Community Connections Database (CCDB) Instructions for Students (CSL-4S)Instructions for Students (CSL-4S) The Community Connections Database (CCDB) allows Connections Database (CCDB) allows students to search for community service learning opportunities

382

Optimizing database-backed applications with query synthesis  

E-Print Network [OSTI]

Object-relational mapping libraries are a popular way for applications to interact with databases because they provide transparent access to the database using the same language as the application. Unfortunately, using ...

Cheung, Alvin K.

383

NOAA Atlas NESDIS 72 WORLD OCEAN DATABASE 2013  

E-Print Network [OSTI]

NOAA Atlas NESDIS 72 WORLD OCEAN DATABASE 2013 Timothy P. Boyer, John I. Antonov, Olga K. Baranova, World Ocean Database 2013. Sydney Levitus, Ed.; Alexey Mishonov, Technical Ed.; NOAA Atlas NESDIS 72........................................................................................................... 14 1.1.1. History

384

Human sciences The human sciences database contains approximately 254 academic  

E-Print Network [OSTI]

Human sciences The human sciences database contains approximately 254 academic journals and statistical reports on the following subjects: (comparative literature, theology, history and geography, education, psychology, arts, languages and Library Science) Social sciences The social sciences database

385

Novel applications of data mining methodologies to incident databases  

E-Print Network [OSTI]

Incident databases provide an excellent opportunity to study the repeated situations of incidents in the process industry. The databases give an insight into the situation which led to an incident, and if studied properly can help monitor...

Anand, Sumit

2006-08-16T23:59:59.000Z

386

Fear and desire in systems design : negotiating database usefulness  

E-Print Network [OSTI]

Databases are ubiquitous. They are used for a host of functions including coordination, decision making, and memory archiving. Despite their importance and ubiquity, databases continue to frustrate us, often departing from ...

Agrawal, Tanu

2008-01-01T23:59:59.000Z

387

Query execution in column-oriented database systems  

E-Print Network [OSTI]

There are two obvious ways to map a two-dimension relational database table onto a one-dimensional storage interface: store the table row-by-row, or store the table column-by-column. Historically, database system implementations ...

Abadi, Daniel J

2008-01-01T23:59:59.000Z

388

Query-based database policy assurance using semantic web technologies  

E-Print Network [OSTI]

In this thesis, we present a novel approach to database security which looks at queries instead of the database tables themselves. In doing so, we use a number of Semantic Web technologies to define rules, translate queries, ...

Soltren, José Hiram

2009-01-01T23:59:59.000Z

389

March 23, 2008 Databases: Information Systems 1 Information Systems  

E-Print Network [OSTI]

March 23, 2008 Databases: Information Systems 1 Information Systems #12;March 23, 2008 Databases: Information Systems 2 Objectives What is an Information System (IS) + Classification of Information Systems + Evolution of Information Systems + Information System Management + Performance Requirements of ISs + #12

Adam, Salah

390

Rocky Mountain Basins Produced Water Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

Historical records for produced water data were collected from multiple sources, including Amoco, British Petroleum, Anadarko Petroleum Corporation, United States Geological Survey (USGS), Wyoming Oil and Gas Commission (WOGC), Denver Earth Resources Library (DERL), Bill Barrett Corporation, Stone Energy, and other operators. In addition, 86 new samples were collected during the summers of 2003 and 2004 from the following areas: Waltman-Cave Gulch, Pinedale, Tablerock and Wild Rose. Samples were tested for standard seven component "Stiff analyses", and strontium and oxygen isotopes. 16,035 analyses were winnowed to 8028 unique records for 3276 wells after a data screening process was completed. [Copied from the Readme document in the zipped file available at http://www.netl.doe.gov/technologies/oil-gas/Software/database.html] Save the Zipped file to your PC. When opened, it will contain four versions of the database: ACCESS, EXCEL, DBF, and CSV formats. The information consists of detailed water analyses from basins in the Rocky Mountain region.

391

REALTIME DATABASE SYSTEMS: ARCHITECTURE AND TECHNIQUES  

E-Print Network [OSTI]

monitoring 175 13.3 ECA rule extended with temporal attributes 178 13.4 Response time in a real­time system using ECA paradigm. 182 14.1 A Real Time Database System 188 14.2 Maximum Age (MA) and Unapplied Update (UU) 192 14.3 Inter­arrival distribution of the stock price updates of G.E. on 94/1/3. 194 14

Ramamritham, Krithi

392

Accelerating semantic graph databases on commodity clusters  

SciTech Connect (OSTI)

We are developing a full software system for accelerating semantic graph databases on commodity cluster that scales to hundreds of nodes while maintaining constant query throughput. Our framework comprises a SPARQL to C++ compiler, a library of parallel graph methods and a custom multithreaded runtime layer, which provides a Partitioned Global Address Space (PGAS) programming model with fork/join parallelism and automatic load balancing over a commodity clusters. We present preliminary results for the compiler and for the runtime.

Morari, Alessandro; Castellana, Vito G.; Haglin, David J.; Feo, John T.; Weaver, Jesse R.; Tumeo, Antonino; Villa, Oreste

2013-10-06T23:59:59.000Z

393

Preparing a public database of radio sources  

E-Print Network [OSTI]

We have collected the largest existing set of radio source lists in machine-readable form: 320 tables with 1.75 million records. Only a minor fraction of these is accessible via public databases. We describe our plans to make this huge amount of heterogeneous data accessible in a homogeneous way via the World Wide Web, with reliable cross-identifications, and searchable by various observables.

H. Andernach; S. A. Trushkin; A. G. Gubanov; O. V. Verkhodanov; V. B. Titov; A. Micol

1996-07-22T23:59:59.000Z

394

Nama Database Wiki | Open Energy Information  

Open Energy Info (EERE)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data CenterFranconia, Virginia: Energy Resources Jump to:46 -Energieprojekte3Informationof Energy Calculator29 JumpNama Database Wiki Jump

395

National Solar Radiation Database | Open Energy Information  

Open Energy Info (EERE)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data CenterFranconia, Virginia: Energy Resources Jump to:46 -Energieprojekte3InformationofServices TMS Inc | OpenInformationDatabase, or

396

International Forest Policy Database | Open Energy Information  

Open Energy Info (EERE)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data CenterFranconia, Virginia: Energy Resources Jump to:46 - 429 Throttled (bot load)International Association ofInternationalPolicy Database

397

A database for the study of marine mammal behavior: Gap analysis, data standardization, and future directions  

E-Print Network [OSTI]

directly for copies of the database and bib- liography. RCommunication _____________ A Database for the Study ofAbstract—A relational database that contained published

Shaffer, S A; Costa, Daniel P

2006-01-01T23:59:59.000Z

398

THERMODYNAMIC TABLES FOR NUCLEAR WASTE ISOLATION, V.1: AQUEOUS SOLUTIONS DATABASE  

E-Print Network [OSTI]

Vol. I. Aq~leous Solutions Database D L S.1,. Philiips, F.V.Vol 1. Aqueous Solutions Database Sidney L. Phillips, FrankDatabase ..

Phillips, S.L.; Hale, F.V.; Silvester, L.F.

2008-01-01T23:59:59.000Z

399

Reliable and Adaptable Security Engineering for Database-Web Services  

E-Print Network [OSTI]

Reliable and Adaptable Security Engineering for Database-Web Services Martin Wimmer , Daniela,ehrnlech}@db.fmi.uni-passau.de Abstract. The situation in engineering security for Web services that access databases is as follows of sophisticated access control concepts for e-services. When engineering Web services that depend on databases

Kemper, Alfons

400

LESSONS LEARNED AND BEST PRACTICES DATABASE USER MANUAL  

E-Print Network [OSTI]

LESSONS LEARNED AND BEST PRACTICES DATABASE USER MANUAL OIA-OCA-0002, Rev. 0 Effective Date: June Lessons Learned and Best Practices Database User Manual RECORD OF REVISION Revision Number Date Approved.............................................................. 26 #12;OIA-OCA-0002, Rev. 0 Page 4 of 26 Lessons Learned and Best Practices Database User Manual 1

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


401

Handling Database Updates in Two-dimensional Temporal Logic  

E-Print Network [OSTI]

describing the history of the world, the database system can also execute temporal speci cations in the form a reference point or a reference time. If we apply these concepts to the description of databases, the history the history of the world (database), and action is to be executed upon the world in the present or future time

Finger, Marcelo

402

Analysing the Entire Wikipedia History with Database Supported Haskell  

E-Print Network [OSTI]

Analysing the Entire Wikipedia History with Database Supported Haskell George Giorgidze1 , Torsten the entire Wikipedia history. DSH is a novel high-level database query facility allowing for the for on our experience of using Database Supported Haskell (DSH) [4] for analysing the entire history

Grust, Torsten

403

Temporal Conditions and Integrity Constraints in Active Database Systems \\Lambda  

E-Print Network [OSTI]

database history. The evaluation algorithm is also an add­on component, executed on top of, and usingTemporal Conditions and Integrity Constraints in Active Database Systems \\Lambda A. Prasad Sistla, for specifying conditions and events in the rules for active database sys­ tem. This language permits

Wolfson, Ouri E.

404

Bridging Relational Database History and the Web: the XML Approach  

E-Print Network [OSTI]

Bridging Relational Database History and the Web: the XML Approach Fusheng Wang Integrated Data and queries, and make it easy to pub- lish database history to the Web. In this paper, we focus on the problem of preserving, publishing, and querying ef- ficiently the history of a relational database. Past research

Zaniolo, Carlo

405

Performance Modeling and Access Methods for Temporal Database Management Systems  

E-Print Network [OSTI]

implementation issues. Database systems with temporal support maintain history data on line together with current. Performance Modeling and Access Methods for Temporal Database Management Systems TR86-018 August. #12;Performance Modeling and Access Methods for Temporal Database Management Systems by Ilsoo Ahn

North Carolina at Chapel Hill, University of

406

Navigocorpus: A Database for Shipping Information A Methodological and  

E-Print Network [OSTI]

of Maritime History XXIII, 2 (2011) 241-262" #12;Jean-Pierre Dedieu, et al. the database on-line beginningNavigocorpus: A Database for Shipping Information ­ A Methodological and Technical Introduction and stored them in databases which are generally organized according to the nature of the sources used

Paris-Sud XI, Université de

407

Preserving and Querying Histories of XML-Published Relational Databases  

E-Print Network [OSTI]

Preserving and Querying Histories of XML-Published Relational Databases Fusheng Wang and Carlo the evolution history of such a view as yet another XML document, whereby the complete history of the database, and identify and select those which are best for representing and querying database histories. We show

Zaniolo, Carlo

408

Database System Concepts, 5th Ed. Silberschatz, Korth and Sudarshan  

E-Print Network [OSTI]

Database System Concepts, 5th Ed. ©Silberschatz, Korth and Sudarshan See www and Sudarshan2.2Database System Concepts - 5th Edition, Oct 5, 2006 Chapter 2: Relational ModelChapter 2: Relational Model Structure of Relational Databases Fundamental Relational-Algebra-Operations Additional

Dragan, Feodor F.

409

Banner Database Clone Request Form ETSU Office of Information Technology  

E-Print Network [OSTI]

Banner Database Clone Request Form ETSU Office of Information Technology 424 Roy S. Nicks Hall, Box Instance: Clone Destination Instance: PROD TSTH TSTH TEST TEST Requested Banner database clone dates: [ clone on/after date ] [ clone required by date ] Banner database clone special requests

Karsai, Istvan

410

Database Managament IS&M Option Mark Levene  

E-Print Network [OSTI]

Database Managament IS&M Option Mark Levene Email: m.levene@dcs.bbk.ac.uk Web: http://www.dcs.bbk.ac.uk/~mark/ Lecture Plan 1. Introduction to Databases 2. Data Modelling with the Entity-Relationship Model 3 and Referential Integrity 4. Querying a Relational Database (a) Querying a Single Table (b) Aggregating

Levene, Mark

411

SPIKE: a database of highly curated human signaling pathways  

E-Print Network [OSTI]

SPIKE: a database of highly curated human signaling pathways Arnon Paz1 , Zippora Brownstein1 Knowledge Engine; http:// www.cs.tau.ac.il/spike/) is a database for achieving this goal, containing highly on the nature of each interaction. To make database population and pathway comprehension straightforward

Avraham, Karen

412

Faculty Database User Instructions Spectral Fusion Designs Page 1  

E-Print Network [OSTI]

Faculty Database User Instructions Spectral Fusion Designs Page 1 Faculty, Staff, and Student Instructions Introduction The Faculty Database is a tool created by Spectral Fusion Designs (SFD faculty, staff, or graduate students must be added to the Faculty Database by departmental administrators

Chu, Xi

413

Database System Concepts, 5th Ed. Silberschatz, Korth and Sudarshan  

E-Print Network [OSTI]

Database System Concepts, 5th Ed. ©Silberschatz, Korth and Sudarshan See www.2Database System Concepts, 5th Edition, Oct 5. 2006 Chapter 4: Advanced SQLChapter 4: Advanced SQL SQL Data Constructs** Recursive Queries** Advanced SQL Features** #12;©Silberschatz, Korth and Sudarshan4.3Database

Dragan, Feodor F.

414

Database System Concepts, 5th Ed. Silberschatz, Korth and Sudarshan  

E-Print Network [OSTI]

Database System Concepts, 5th Ed. ©Silberschatz, Korth and Sudarshan See www;©Silberschatz, Korth and Sudarshan6.2Database System Concepts - 5th Edition, Oct 5, 2006 Chapter 6: Entity Design Issues Weak Entity Sets Extended E-R Features Design of the Bank Database Reduction to Relation

Dragan, Feodor F.

415

Calculating Very Rough Market Share Using the Canadian Business Database  

E-Print Network [OSTI]

Calculating Very Rough Market Share Using the Canadian Business Database If you cannot find market market share using the company information provided in the Canadian Business Database (CBD), an online - it should be considered a last resort for this information. STEP 1: ACCESS THE CANADIAN BUSINESS DATABASE 1a

Thompson, Michael

416

Biodiversity Database Developer/Programmer Academy of Natural Sciences, Philadelphia  

E-Print Network [OSTI]

Biodiversity Database Developer/Programmer Academy of Natural Sciences, Philadelphia (Position of Philadelphia seeks a database programmer who can develop desktop and web-based solutions for managing specimen), paleontology (fossils) and general invertebrates. Current databases hold more than 1 million records in various

Plotkin, Joshua B.

417

Database Connects Public to University of Nebraska Research  

E-Print Network [OSTI]

Database Connects Public to University of Nebraska Research By Steve Ress There's a wealth of water easier. An easily accessible and searchable database sponsored by the University of Nebraska Rachael Herpel, outreach and education specialist at the UNL Water Center. The database can be found

Nebraska-Lincoln, University of

418

Database Research: Achievements and Opportunities Into the 21st Century  

E-Print Network [OSTI]

Database Research: Achievements and Opportunities Into the 21st Century Avi Silberschatz, Mike Stonebraker, Jeff Ullman, editors Report of an NSF Workshop on the Future of Database Systems Research, May 26--27, 1995 1 1 Introduction In February of 1990, a group of database researchers met to examine the prospects

Ullman, Jeffrey D.

419

Development of a Series of National Coalbed Methane Databases  

E-Print Network [OSTI]

Development of a Series of National Coalbed Methane Databases Mohaghegh, S. D., Nunsavathu, U Growing Interest in Coalbed Methane ­ Elevated natural gas prices ­ Demand for clean energy sources DatabaseDatabase One Location Reservoir & Sorption Collection ­ 126 Coalbed Areas ­ 34 Parameters Ordered

Mohaghegh, Shahab

420

A Survey of Single-Database PIR: Techniques and Applications  

E-Print Network [OSTI]

A Survey of Single-Database PIR: Techniques and Applications Rafail Ostrovsky William E. Skeith III Abstract In this paper we survey the notion of Single-Database Private Information Re- trieval (PIR). The first Single-Database PIR was constructed in 1997 by Kushilevitz and Ostrovsky and since then Single

Ostrovsky, Rafail

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


421

A Survey of SingleDatabase PIR: Techniques and Applications #  

E-Print Network [OSTI]

A Survey of Single­Database PIR: Techniques and Applications # Rafail Ostrovsky + William E. Skeith (PIR). The first Single­Database PIR was constructed in 1997 by Kushilevitz and Ostrovsky and since then Single­Database PIR has emerged as an important cryp­ tographic primitive. For example, Single

422

A Survey of SingleDatabase PIR: Techniques and Applications  

E-Print Network [OSTI]

A Survey of Single­Database PIR: Techniques and Applications Rafail Ostrovsky # William E. Skeith (PIR). The first Single­Database PIR was constructed in 1997 by Kushilevitz and Ostrovsky and since then Single­Database PIR has emerged as an important cryp­ tographic primitive. For example, Single

Ostrovsky, Rafail

423

Data Quality of Native XML Databases in the Healthcare Domain  

E-Print Network [OSTI]

.0 [Database Management]: Security, integrity and protection; K.6.4 [System Management]: Quality assurance; J.3 are not foolproof. This report reviews work on data quality in both database and management research areas support database systems provide in giving a measure of the quality of the data they hold. This inducts

North, Siobhán

424

December 6, 1995 A MODEL FOR MATERIALS DATABASES  

E-Print Network [OSTI]

believe are the most closely related to future development of materials database management. Broadly advanced materials are unsuitable. 5. Interfaces provided by existing database management systemsDecember 6, 1995 A MODEL FOR MATERIALS DATABASES Gio Wiederhold Laie Caindec John McCarthy Ken

Wiederhold, Gio

425

Oracle Database DBFS Hierarchical Storage Overview  

SciTech Connect (OSTI)

The National Ignition Facility (NIF) at the Lawrence Livermore National Laboratory creates large numbers of images during each shot cycle for the analysis of optics, target inspection and target diagnostics. These images must be readily accessible once they are created and available for the 30 year lifetime of the facility. The Livermore Computing Center (LC) runs a High Performance Storage System (HPSS) that is capable of storing NIF's estimated 1 petabyte of diagnostic images at a fraction of what it would cost NIF to operate its own automated tape library. With Oracle 11g Release 2 database, it is now possible to create an application transparent, hierarchical storage system using the LC's HPSS. Using the Oracle DBMS-LOB and DBMS-DBFS-HS packages a SecureFile LOB can now be archived to storage outside of the database and accessed seamlessly through a DBFS 'link'. NIF has chosen to use this technology to implement a hierarchical store for its image based SecureFile LOBs. Using a modified external store and DBFS links, files are written to and read from a disk 'staging area' using Oracle's backup utility. Database external procedure calls invoke OS based scripts to manage a staging area and the transfer of the backup files between the staging area and the Lab's HPSS.

Rivenes, A

2011-07-25T23:59:59.000Z

426

MTBreg: The Database of Conditionally Regulated Proteins in Mycobacterium Tuberculosis  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

Proteins up- and down- regulated in Mycobacterium tuberculosis grown under conditions mimicking infection are included in this database. It also includes information on proteins that are regulated by selected transcription factors or other regulatory proteins. The literature data provided here is complimentary to the databases provided by Michael Strong that include recent TB computational functional linkages and the Prolinks Database by Peter Bowers. The experimental condition, the experimental dataset and a literature reference will be displayed, including links to the computationally linked proteins in the Prolinks Database and the entry in the Mycobacterium tuberculosis Structural Genomics Database.[Copied from information at http://www.doe-mbi.ucla.edu/Services/MTBreg/

Kaufman, Markus; Pal, Debnath; Eisenberg, David

427

Ceramic Technology Project database: September 1990 summary report  

SciTech Connect (OSTI)

Data generated within the Ceramic Technology Project (CTP) represent a valuable resource for both research and industry. The CTP database was created to provide easy access to this information in electronic and hardcopy forms by using a computerized database and by issuing periodic hardcopy reports on the database contents. This report is the sixth in a series of semiannual database summaries and covers recent additions to the database, including joined brazed specimen test data. It covers 1 SiC, 34 SiN, 10 whisker-reinforced SiN, 2 zirconia-toughened aluminas, 8 zirconias, and 34 joints.

Keyes, B.L.P.

1992-06-01T23:59:59.000Z

428

Service Description Unit Rate in $ Invoice Description Database Administration (1 to 600 MB) MB/Month 0.550 DATABASE 1-600 MB/MO  

E-Print Network [OSTI]

Service Description Unit Rate in $ Invoice Description Database Administration (1 to 600 MB) MB/Month 0.550 DATABASE 1-600 MB/MO Database Administration (601 to 950 MB) MB/Month 0.290 DATABASE 601-950 MB/MO Database Administration (951 to 3,000 MB) MB/Month 0.200 DATABASE 951-3,000 MB/MO Database

429

Service Description Unit Rate in $ Invoice Description Database Administration (1 to 600 MB) MB/Month 0.500 DATABASE 1-600 MB/MO  

E-Print Network [OSTI]

Service Description Unit Rate in $ Invoice Description Database Administration (1 to 600 MB) MB/Month 0.500 DATABASE 1-600 MB/MO Database Administration (601 to 950 MB) MB/Month 0.265 DATABASE 601-950 MB/MO Database Administration (951 to 3,000 MB) MB/Month 0.175 DATABASE 951-3,000 MB/MO Database

430

A database for The Geysers geothermal field  

SciTech Connect (OSTI)

In Fiscal Year 1985-1986 the Earth Sciences Division of Lawrence Berkeley Laboratory (LBL) began a multi-year project for SLC to organize and analyze the field data from The Geysers. In the first year, most of the work concentrated on the development of a comprehensive database for The Geysers, and conventional reservoir engineering analysis of the data. Essentially, all non-proprietary data for wells at The Geysers have been incorporated into the database, as well as proprietary data from wells located on State leases. In following years, a more detailed analysis of The Geysers data has been carried out. This report is a summary of the non- proprietary work performed in FY 1985--1986. It describes various aspects of the database and also includes: review sections on Field Development, Geology, Geophysics, Geochemistry and Reservoir Engineering. It should be emphasized that these background chapters were written in 1986, and therefore only summarize the information available at that time. The appendices contain individual plots of wellhead pressures, degree of superheat, steam flow rates, cumulative mass flows, injection rates and cumulative injection through 1988 for approximately 250 wells. All of the data contained in this report are non-proprietary, from State and non-State leases. The production/injection and heat flow data from the wells were obtained from the California State Division of Oil and gas (DOG) (courtesy of Dick Thomas). Most of the other data were obtained from SLC files in Sacramento (courtesy of Charles Priddy), or DOG files in Santa Rosa (courtesy of Ken Stelling). 159 refs., 23 figs., 3 tabs.

Bodvarsson, G.S.; Cox, B.L.; Fuller, P.; Ripperda, M.; Tulinius, H.; Witherspoon, P.A.; Goldstein, N.; Flexser, S.; Pruess, K. (Lawrence Berkeley Lab., CA (USA)); Truesdell, A. (Geological Survey, Menlo Park, CA (USA))

1989-09-01T23:59:59.000Z

431

Fire Protection Database | Department of Energy  

Office of Environmental Management (EM)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE:1 First Use of Energy for All Purposes (Fuel and Nonfuel),Feet) Year Jan Feb Mar Apr May Jun Jul(Summary) " ,"ClickPipelinesProvedDecember 2005DepartmentDecember U.S.Financial Statement:Fire Protection Database

432

Transmission/Nepa Database | Open Energy Information  

Open Energy Info (EERE)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data CenterFranconia, Virginia:FAQ < RAPID Jump to:Seadov Pty LtdSteen,LtdInformation Dixie Valley GeothermalTransmarkNepa Database <

433

Transport NAMA Database | Open Energy Information  

Open Energy Info (EERE)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data CenterFranconia, Virginia:FAQ < RAPID Jump to:Seadov Pty LtdSteen,LtdInformation Dixie ValleyLibrary <NAMA Database Jump to:

434

Current status of the CATS database  

E-Print Network [OSTI]

We describe the current status of CATS, a publicly accessible database (web-server http://cats.sao.ru) allowing one to search in hundreds of catalogs of astronomical objects discovered all along the electromagnetic spectrum. Our emphasis is mainly laid on catalogs of radio continuum sources observed from 30 to 15000 MHz, secondly on catalogs of objects such as radio and active stars, planetary nebulae, HII regions, supernova remnants (SNR), pulsars, nearby galaxies, AGN and quasars. CATS also includes the catalogs from the largest extragalactic surveys, like NVSS, FIRST, WENSS, VLSS, TXS, GB6, SUMSS, IRAS, 2MASS, SDSS, ROSAT, PGC, MCG, etc. In 2004 CATS comprised a total of $\\sim10^9$ records from over 400 catalogs in the radio, IR, optical and X-ray windows, including most of RATAN--600 catalogs. CATS is being expanded and updated, both with newly published catalogs as well as older ones which we have created in electronic form for the first time. We describe the principles of organization of the database of astrophysical catalogs and the main functions of CATS.

O. V. Verkhodanov; S. A. Trushkin; H. Andernach; V. N. Chernenkov

2007-05-21T23:59:59.000Z

435

Managing MEDLINE: A Comparison of a Native XML Database System with a Relational Database System  

E-Print Network [OSTI]

. The DTD (Document Type Definition) defines the integral structure of the XML document. It describes querying the database online, and in an effort to control load on the servers, NLM limits the number offers researchers to overcome the limitations of the query options offered by NLM's web interface

Madiraju, Praveen

436

Prolactin messenger ribonucleic acid concentrations throughout the ovine estrous cycle: Assessment relative to prolactin serum and pituitary amounts  

SciTech Connect (OSTI)

Prolactin (PRL) mRNA concentrations were assessed by nucleic acid hybridization assays in pituitaries of ewes representing the defined stages of the ovine estrous cycle. Concomitantly, pituitary and serum PRL concentrations were measured in these ewes using radioimmunoassays. It was observed that PRL serum, pituitary and mRNA concentrations tended to increase near the time of the gonadotropin preovulatory surge, particularly between 24 hrs before behavioral estrus to 5 hours after estrus. However, the changes in PRL mRNA, serum and pituitary concentrations were shown not to be statistically significant. These data suggest that PRL production during the sheep estrous cycle is maintained without dramatic changes in synthesis or secretion.

Landefeld, T.; Roulia, V.; Bagnell, T.; Ballard, T.; Levitan, I. (Univ. of Michigan, Ann Arbor (USA))

1991-01-01T23:59:59.000Z

437

Argonne Geothermal Geochemical Database v2.0  

SciTech Connect (OSTI)

A database of geochemical data from potential geothermal sources aggregated from multiple sources as of March 2010. The database contains fields for the location, depth, temperature, pH, total dissolved solids concentration, chemical composition, and date of sampling. A separate tab contains data on non-condensible gas compositions. The database contains records for over 50,000 wells, although many entries are incomplete. Current versions of source documentation are listed in the dataset.

Harto, Christopher

2013-05-22T23:59:59.000Z

438

Argonne Geothermal Geochemical Database v2.0  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

A database of geochemical data from potential geothermal sources aggregated from multiple sources as of March 2010. The database contains fields for the location, depth, temperature, pH, total dissolved solids concentration, chemical composition, and date of sampling. A separate tab contains data on non-condensible gas compositions. The database contains records for over 50,000 wells, although many entries are incomplete. Current versions of source documentation are listed in the dataset.

Harto, Christopher

439

FOA aimed at growing expansive database of Renewable Energy and...  

Open Energy Info (EERE)

FOA aimed at growing expansive database of Renewable Energy and Energy Efficiency Incentives and Policies Home > Groups > Utility Rate Graham7781's picture Submitted by...

440

Wind-Wildlife Impacts Literature Database (WILD)(Fact Sheet)...  

Office of Scientific and Technical Information (OSTI)

Impacts Literature Database (WILD), developed and maintained by the National Wind Technology Center (NWTC) at the National Renewable Energy Laboratory (NREL), is...

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


441

Webinar: What Can We Learn from Hydrogen Safety Event Databases?  

Broader source: Energy.gov [DOE]

Video recording of the Fuel Cell Technologies Office webinar, What Can We Learn from Hydrogen Safety Event Databases, originally presented on September 10, 2013.

442

Developing a Soil Property Database for the Oklahoma Mesonet.  

E-Print Network [OSTI]

??The objective of this study was to create a comprehensive database of soil hydraulic and physical properties of the Oklahoma Mesonet station soils. Replicate soil… (more)

Scott, Bethany

2012-01-01T23:59:59.000Z

443

Practical security for multi-user web application databases  

E-Print Network [OSTI]

Online web applications are continuously vulnerable to attacks on their users' data. Outside adversaries can gain unauthorized access by exploiting unknown vulnerabilities; curious or malicious database administrators can ...

Redfield, Catherine M. S

2012-01-01T23:59:59.000Z

444

autism genetic database: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

sensitive data. The security of the data depends on physical security, OS security and DBMS security. Database security can be compromised by obtaining sensitive data, changing...

445

africa research database: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

sensitive data. The security of the data depends on physical security, OS security and DBMS security. Database security can be compromised by obtaining sensitive data, changing...

446

anchoring proteins database: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

sensitive data. The security of the data depends on physical security, OS security and DBMS security. Database security can be compromised by obtaining sensitive data, changing...

447

antimicrobial peptide database: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

sensitive data. The security of the data depends on physical security, OS security and DBMS security. Database security can be compromised by obtaining sensitive data, changing...

448

adans database specification: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

sensitive data. The security of the data depends on physical security, OS security and DBMS security. Database security can be compromised by obtaining sensitive data, changing...

449

adverse reactions database: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

sensitive data. The security of the data depends on physical security, OS security and DBMS security. Database security can be compromised by obtaining sensitive data, changing...

450

Extracting Database Information from E-mail Messages  

E-Print Network [OSTI]

Cooper,R.L. Ali,S. 20th British National Conference on Databases, July 2003 pp 271-279 LNCS, Springer

Cooper, R.L.

451

Distributed Online Conditions Database of the BaBar Experiment  

SciTech Connect (OSTI)

This paper presents CDB - The distributed Conditions Database of the BaBar Experiment. CDB is the second major iteration of the database deployed in BaBar for production use as of October 2002. It replaced the original version of the database used through the first three years of the data taking. The new design and its implementation aims to improve the performance and scalability of the original database and addresses the emerging challenges of the distributed data production and analysis system of the Experiment.

Khan, A.; /Brunel U.; Gaponenko, I.A.; Brown, D.N.; /LBL, Berkeley

2011-11-21T23:59:59.000Z

452

aspergillus genome database: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

and avoid outdated data. Heiko Mller 11 Integrative database analysis in structural genomics CiteSeer Summary: Abstract (2 sentences) An important aspect of structural genomics...

453

Tri-Party Agreement databases, access mechanism and procedures  

SciTech Connect (OSTI)

This document contains the information required for the Washington State Department of Ecology (Ecology) and the US Environmental Protection Agency (EPA) to access databases related to the Hanford Federal Facility Agreement and Consent Order [also known as the Tri-Party Agreement (TPA)] (Ecology et al. 1992). It identifies the procedure required to obtain access to the Hanford computer networks and the TPA related databases. It addresses security requirements, access methods, database availability dates, database access procedures, and the minimum computer hardware and software configurations required to operate within the Hanford networks.

Brulotte, P.J.; Christensen, K.C.

1993-10-01T23:59:59.000Z

454

Standard Energy Efficiency Database Platform - 2013 BTO Peer...  

Energy Savers [EERE]

More Documents & Publications Buildings Performance Database - 2013 BTO Peer Review Commercial Buildings Integration Program Overview - 2013 BTO Peer Review Future Funding:...

455

anatomical database generation: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

of emotional speech databases. Ellen Douglas-Cowie; Nick Campbell; Roddy Cowie; Peter Roach 2003-01-01 16 In Proceedings of the International Conference on Logic Programming,...

456

Freedom of Information and Privacy Act Database PIA, Idaho Operations...  

Energy Savers [EERE]

Freedom of Information and Privacy Act Database PIA, Idaho Operations Office More Documents & Publications PIA - Security Clearance Work Tracking and Budget System TRAIN-PIA.pdf...

457

Multi databases in Health Care Networks  

E-Print Network [OSTI]

E-Health is a relatively recent term for healthcare practice supported by electronic processes and communication, dating back to at least 1999. E-Health is greatly impacting on information distribution and availability within the health services, hospitals and to the public. E-health was introduced as the death of telemedicine, because - in the context of a broad availability of medical information systems that can interconnect and communicate - telemedicine will no longer exist as a specific field. The same could also be said for any other traditional field in medical informatics, including information systems and electronic patient records. E-health presents itself as a common name for all such technological fields. In this paper we focuses in multi database by determined some sites and distributed it in Homogenous way. This will be followed by an illustrative example as related works. Finally, the paper concludes with general remarks and a statement of further work.

Salih, Nadir K; Sun, Mingrui

2011-01-01T23:59:59.000Z

458

Prokaryotic Genomes from Microbes Online Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

To describe the potential functions of genes, MicrobesOnline includes protein family analyses (from InterPro and COG), metabolic maps (from KEGG), links to research papers (from UniProt and PubMed), and operon predictions for every genome. To examine each gene's evolutionary history, MicrobesOnline includes precomputed phylogenetic trees for all the gene families. It displays gene trees with genomic context or it compares the gene tree to the species tree. The tools provided with MicrobesOnline allow users to: compute customized motifs, sequence alignments, and phylogenetic trees change expression patterns in metabolic maps annotate genes in various ways The database contains more than 430 genomes. A browse tree tool and a genome browser are available, along with specialized search capabilities. (Specialized Interface)

Alm, Eric J.; Huang, Katherine H.; Price, Morgan N.; Koche, Richard P.; Keller, Keith; Dubchak, Inna L.; Arkin, Adam P.

459

Biomass Feedstock Composition and Property Database  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The Office of Energy Efficiency and Renewable Energy's Biomass Program works with industry, academia and national laboratory partners on a balanced portfolio of research in biomass feedstocks and conversion technologies. Through research, development, and demonstration efforts geared at the development of integrated biorefineries, the Biomass Program is helping transform the nation's renewable and abundant biomass resources into cost competitive, high performance biofuels, bioproducts, and biopower.(From the Biomass Program's home page at http://www1.eere.energy.gov/biomass/) The Biomass Feedstock Composition and Property Database allows the user to choose from more than 150 types of biomass samples. The specialized interface then guides the user through choices within the sample (such as "Ash" as a choice in the "Hardwood" sample and displays tables based on choice of composition properties, structure properties, elemental properties, extractive properties, etc.

460

Los Alamos National Laboratory 4D Database  

SciTech Connect (OSTI)

4D is an integrated development platform - a single product comprised of the components you need to create and distribute professional applications. You get a graphical design environment, SQL database, a programming language, integrated PHP execution, HTTP server, application server, executable generator, and much more. 4D offers multi-platform development and deployment, meaning whatever you create on a Mac can be used on Windows, and vice-versa. Beyond productive development, 4D is renowned for its great flexibility in maintenance and modification of existing applications, and its extreme ease of implementation in its numerous deployment options. Your professional application can be put into production more quickly, at a lower cost, and will always be instantly scalable. 4D makes it easy, whether you're looking to create a classic desktop application, a client-server system, a distributed solution for Web or mobile clients - or all of the above!

Atencio, Julian J.

2014-05-02T23:59:59.000Z

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


461

CHIANTI-AN ATOMIC DATABASE FOR EMISSION LINES. XII. VERSION 7 OF THE DATABASE  

SciTech Connect (OSTI)

The CHIANTI spectral code consists of an atomic database and a suite of computer programs to calculate the optically thin spectrum of astrophysical objects and carry out spectroscopic plasma diagnostics. The database includes atomic energy levels, wavelengths, radiative transition probabilities, collision excitation rate coefficients, and ionization and recombination rate coefficients, as well as data to calculate free-free, free-bound, and two-photon continuum emission. Version 7 has been released, which includes several new ions, significant updates to existing ions, as well as Chianti-Py, the implementation of CHIANTI software in the Python programming language. All data and programs are freely available at http://www.chiantidatabase.org, while the Python interface to CHIANTI can be found at http://chiantipy.sourceforge.net.

Landi, E. [Department of Atmospheric, Oceanic and Space Sciences, University of Michigan, Ann Arbor, MI 48109 (United States); Del Zanna, G.; Mason, H. E. [Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA (United Kingdom); Young, P. R. [College of Science, George Mason University, 4400 University Drive, Fairfax, VA, 22030 (United States); Dere, K. P. [School of Physics, Astronomy and Computational Sciences, MS 6A2, George Mason University, 4400 University Drive, Fairfax, VA 22030 (United States)

2012-01-10T23:59:59.000Z

462

Smart Services for Ad Hoc Databases University of Washington  

E-Print Network [OSTI]

or resources. · The initial investment required to design and populate a database is also costly. Developing Capital estimated that 90% of all business data is maintained in spreadsheets [12]. Permission to copy data-base from lists of addresses of nearby schools, locations of resources (e.g., ambulances

463

TWRS information locator database system administrator`s manual  

SciTech Connect (OSTI)

This document is a guide for use by the Tank Waste Remediation System (TWRS) Information Locator Database (ILD) System Administrator. The TWRS ILD System is an inventory of information used in the TWRS Systems Engineering process to represent the TWRS Technical Baseline. The inventory is maintained in the form of a relational database developed in Paradox 4.5.

Knutson, B.J., Westinghouse Hanford

1996-09-13T23:59:59.000Z

464

DISTRIBUTED, WEB-BASED MICROSTRUCTURE DATABASE FOR BRAIN TISSUE  

E-Print Network [OSTI]

DISTRIBUTED, WEB-BASED MICROSTRUCTURE DATABASE FOR BRAIN TISSUE A Thesis by WONRYULL KOH Submitted-BASED MICROSTRUCTURE DATABASE FOR BRAIN TISSUE A Thesis by WONRYULL KOH Submitted to Texas A&M University in partial) __________________________ Ian S. Russell (Member) __________________________ Wei Zhao (Head of Department

465

Spatial Data Mining: Database Primitives, Algorithms and Efficient DBMS Support  

E-Print Network [OSTI]

- 1 - Spatial Data Mining: Database Primitives, Algorithms and Efficient DBMS Support Martin Ester: Spatial data mining algorithms heavily depend on the efficient processing of neighbor- hood relations of these concepts will allow a tight integration of spatial data mining algo- rithms with a spatial database

Ester, Martin

466

EDITOR'S CORNER HIVdb: A Database of the Structures of Human  

E-Print Network [OSTI]

EDITOR'S CORNER HIVdb: A Database of the Structures of Human Immunodeficiency Virus Protease Human be estimated at many hundreds, making HIV PR the most widely studied enzyme in the history of protein to creation of the Internet- based HIV PR Database (HIVdb).8 After 6 years spent on creating and curating

467

NOAA Atlas NESDIS 66 WORLD OCEAN DATABASE 2009  

E-Print Network [OSTI]

NOAA Atlas NESDIS 66 WORLD OCEAN DATABASE 2009 Timothy P. Boyer John I. Antonov Olga K. Baranova. Mishonov, T. D. O'Brien, D. Seidov, I. V. Smolyar, M. M. Zweng, 2009. World Ocean Database 2009. S. Levitus ................................................................................................. 18 1.1.1. History

468

An Adaptive Policy for Improved Timeliness in Secure Database Systems  

E-Print Network [OSTI]

An Adaptive Policy for Improved Timeliness in Secure Database Systems Sang H. Son * , Rasikan David. Multilevel security requirements introduce a new dimension to transaction processing in real­time database Timeliness, concurrency control, two­phase locking, non­interference, security, miss percentage 1

Son, Sang H.

469

DBDOC: Querying and Browsing Databases and Interrelated Documents  

E-Print Network [OSTI]

]: Database Administra- tion--Data warehouse and repository General Terms Management, Documentation, Design 1 to describe this structured data. Managing semi- structured sources, such as documents, text files, web pagesDBDOC: Querying and Browsing Databases and Interrelated Documents Carlos Garcia-Alvarado University

Ordonez, Carlos

470

Concurrency control in a fully replicated database environment  

E-Print Network [OSTI]

of the sites has a fully replicated copy of the database managed by a DBMS. The database consists of a number of named data items each having the time-stamp of the last transaction to update it. Att the messages concerned with this algorithm move in one...

Nath, Rajivendra

1992-01-01T23:59:59.000Z

471

Intelligent Databases: Old Challenges and New Opportunities \\Lambda  

E-Print Network [OSTI]

Department, University of California Los Angeles, CA 90024 zaniolo@cs.ucla.edu Abstract The evolution to the evolution of databases and information systems to statisfy said demands. In addition to all database­based specifications. In this paper, we review the evolution of the enabling technology and architectures of deductive

Zaniolo, Carlo

472

Flash Device Support for Database Management Philippe Bonnet  

E-Print Network [OSTI]

a DBMS to explicitly control IO behavior. We believe that these approaches are natural evolutions have a reference DBMS design nor a performance model for flash devices: database researchers devices should support database management. We ad- vocate that flash devices should provide DBMS with more

473

Scalable Database Access Technologies for ATLAS Distributed Computing  

E-Print Network [OSTI]

ATLAS event data processing requires access to non-event data (detector conditions, calibrations, etc.) stored in relational databases. The database-resident data are crucial for the event data reconstruction processing steps and often required for user analysis. A main focus of ATLAS database operations is on the worldwide distribution of the Conditions DB data, which are necessary for every ATLAS data processing job. Since Conditions DB access is critical for operations with real data, we have developed the system where a different technology can be used as a redundant backup. Redundant database operations infrastructure fully satisfies the requirements of ATLAS reprocessing, which has been proven on a scale of one billion database queries during two reprocessing campaigns of 0.5 PB of single-beam and cosmics data on the Grid. To collect experience and provide input for a best choice of technologies, several promising options for efficient database access in user analysis were evaluated successfully. We present ATLAS experience with scalable database access technologies and describe our approach for prevention of database access bottlenecks in a Grid computing environment.

A. Vaniachine; for the ATLAS Collaboration

2009-10-02T23:59:59.000Z

474

Quality Assurance Procedures for ModCat Database Code Files  

SciTech Connect (OSTI)

The Quality Assurance procedures used for the initial phase of the Model Catalog Project were developed to attain two objectives, referred to as “basic functionality” and “visualization.” To ensure the Monte Carlo N-Particle model input files posted into the ModCat database meet those goals, all models considered as candidates for the database are tested, revised, and re-tested.

Siciliano, Edward R.; Devanathan, Ram; Guillen, Zoe C.; Kouzes, Richard T.; Schweppe, John E.

2014-04-01T23:59:59.000Z

475

Great Lakes Hydrometeorological Station Directory Database and Internet Web Development  

E-Print Network [OSTI]

Great Lakes Hydrometeorological Station Directory Database and Internet Web Development Primary Investigator: Thomas Croley - NOAA GLERL (Emeritus) This project was completed in 2001 Overview A new directory in hydrometeorological data availability with in the Great Lakes. The new directory will consist of an updated database

476

Single Database Private Information Retrieval with Logarithmic Communication  

E-Print Network [OSTI]

]. Historically, the first 1dPIR scheme was proposed in [KO97], with its security based on the hardness database private information retrieval (1dPIR) is a cryptographic protocol between a database server, who (as otherwise the problem becomes trivial). In addition to its numerous applications [A01], 1dPIR

477

Single Database Private Information Retrieval Implies Oblivious Transfer  

E-Print Network [OSTI]

Tal Malkinz Rafail Ostrovskyx Abstract A Single-Database Private Information Retrieval PIR- munication complexity. We call a PIR protocol non-trivial if its total communication is strictly less than the size of the database. Non-trivial PIR is an important cryp- tographic primitive with many applications

Ostrovsky, Rafail

478

Preserving Access Privacy Over Large Databases Femi Olumofin  

E-Print Network [OSTI]

. The security of many such systems, such as Tor, relies on a model where the adversary does not have a global. Private information retrieval (PIR) schemes are designed to prevent an adversary controlling the database-of-the-art PIR schemes have a high computational overhead that makes them expensive for querying large databases

Goldberg, Ian

479

Single Database Private Information Retrieval with Logarithmic Communication  

E-Print Network [OSTI]

]. Historically, the first 1dPIR scheme was proposed in [KO97], with its security based on the hardness Single database private information retrieval (1dPIR) is a cryptographic protocol between a database to the user (as otherwise the problem becomes trivial). In addition to its numerous applications [A01], 1dPIR

480

SANDBOX: A VIRTUAL REALITY INTERFACE TO SCIENTIFIC DATABASES ANDREW JOHNSON  

E-Print Network [OSTI]

SANDBOX: A VIRTUAL REALITY INTERFACE TO SCIENTIFIC DATABASES by ANDREW JOHNSON DISSERTATION: Adviser Date #12; c COPYRIGHT BY ANDREW JOHNSON 1994 All Rights Reserved #12;Dedication I dedicate; Narendra Goel, John Norman, and Don Strebel for their insight into the FIFE database; and Larry Cathey

Johnson, Andrew

Note: This page contains sample records for the topic "nucleic acid database" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


481

Improving Mobile Database Access Over Wide-Area Networks Without  

E-Print Network [OSTI]

to compensate for weak connectivity. Its central organizing principle is that even a stale client replica can be used to reduce data transmission volume from a database server. The reduc- tion is achieved by using. This organizing principle allows Cedar to use an optimistic approach to solving the difficult problem of database

482

Diesel: Applying Privilege Separation to Database Access Adrienne Porter Felt  

E-Print Network [OSTI]

Diesel: Applying Privilege Separation to Database Access Adrienne Porter Felt UC Berkeley apf reviewers. We construct a system called Diesel, which implements data sep- aration by intercepting database queries and applying mod- ules' restrictions to the queries. We evaluate Diesel on three widely

Wagner, David

483

Diesel: Applying Privilege Separation to Database Adrienne Porter Felt  

E-Print Network [OSTI]

Diesel: Applying Privilege Separation to Database Access Adrienne Porter Felt Matthew Finifter Joel to lists, requires prior specific permission. #12;Diesel: Applying Privilege Separation to Database Access and code reviewers. We design and construct a system called Diesel, which implements data separation

Wagner, David

484

Abduction with Negation as Failure for Active Databases and Agents  

E-Print Network [OSTI]

Abduction with Negation as Failure for Active Databases and Agents Fariba Sadri and Francesca Toni suggested abductive logic programming as a suitable formalism to represent active databases and intelligent agents. In particular, abducibles and integrity constaints in abductive logic pro- grams can be used

Toni, Francesca

485

Updating a Biomedical Database Writing, Reading and Invisible Contribution*  

E-Print Network [OSTI]

Updating a Biomedical Database Writing, Reading and Invisible Contribution* David PONTILLE chargé part of biomedical research (Bowker 2000; Hine 2006). As a result of developments in molecular biology project on several biomedical databases in France and the issues involved in different forms

Paris-Sud XI, Université de

486

DOE technology information management system database study report  

SciTech Connect (OSTI)

To support the missions of the US Department of Energy (DOE) Special Technologies Program, Argonne National Laboratory is defining the requirements for an automated software system that will search electronic databases on technology. This report examines the work done and results to date. Argonne studied existing commercial and government sources of technology databases in five general areas: on-line services, patent database sources, government sources, aerospace technology sources, and general technology sources. First, it conducted a preliminary investigation of these sources to obtain information on the content, cost, frequency of updates, and other aspects of their databases. The Laboratory then performed detailed examinations of at least one source in each area. On this basis, Argonne recommended which databases should be incorporated in DOE`s Technology Information Management System.

Widing, M.A.; Blodgett, D.W.; Braun, M.D.; Jusko, M.J.; Keisler, J.M.; Love, R.J.; Robinson, G.L. [Argonne National Lab., IL (United States). Decision and Information Sciences Div.

1994-11-01T23:59:59.000Z

487

We analyze a set of three databases at different levels of aggregation: (a) a database of approximately 106  

E-Print Network [OSTI]

or global warming or renewable sources of energy) can dramatically impact the pattern of developmentWe analyze a set of three databases at different levels of aggregation: (a) a database levels of aggregation we find that the mean annual growth rates of publications is in- dependent

Stanley, H. Eugene

488

Extragalactic database. VII Reduction of astrophysical parameters  

E-Print Network [OSTI]

The Lyon-Meudon Extragalactic database (LEDA) gives a free access to the main astrophysical parameters for more than 100,000 galaxies. The most common names are compiled allowing users to recover quickly any galaxy. All these measured astrophysical parameters are first reduced to a common system according to well defined reduction formulae leading to mean homogeneized parameters. Further, these parameters are also transformed into corrected parameters from widely accepted models. For instance, raw 21-cm line widths are transformed into mean standard widths after correction for instrumental effect and then into maximum velocity rotation properly corrected for inclination and non-circular velocity. This paper presents the reduction formulae for each parameter: coordinates, morphological type and luminosity class, diameter and axis ratio, apparent magnitude (UBV, IR, HI) and colors, maximum velocity rotation and central velocity dispersion, radial velocity, mean surface brightness, distance modulus and absolute magnitude, and group membership. For each of these parameters intermediate quantities are given: galactic extinction, inclination, K-correction etc.. All these parameters are available from direct connexion to LEDA (telnet lmc.univ-lyon1.fr, login: leda, no passwd OR http://www-obs.univ-lyon1.fr/leda ) and distributed on a standard CD-ROM (PGC-ROM 1996) by the Observatoire de Lyon via the CNRS (mail to petit@obs.univ-lyon1.fr).

G. Paturel; H. Andernach; L. Bottinelli; H. Di Nella; N. Durand; R. Garnier; L. Gouguenheim; P. Lanoix; M. C. Marthinet; C. Petit; J. Rousseau; G. Theureau; I. Vauglin

1998-06-10T23:59:59.000Z

489

A New Heat Shock Protein That Binds Nucleic Acids* (Received for publication, August 20, 1998, and in revised form, September 28, 1998)  

E-Print Network [OSTI]

production of a number of proteins termed heat shock proteins (Hsps).1 Although heat shock pro- teins were Hsp15-P2 (5 - TCTTGCAGGATCCAGTTATTCACT-3 ), and Taq polymerase (Strat- agene). The PCR product g, 4 °C). All further steps were performed at 4 °C. The cell pellet was resuspended in cold buffer

Bardwell, James

490

Nucleic Acids Research, 2007, Vol. 35, Web Server issue W357W362 doi:10.1093/nar/gkm231  

E-Print Network [OSTI]

://pipe.scs.fsu.edu. To illustrate the utility of these web servers, cons-PPISP and DISPLAR predictions are used to construct of the web servers and illustrate their utility by a structural model, built from predictions of the web similar designs. The input in each case consists of data for a list of residues. In WESA, the list

Weston, Ken

491

Published online 26 November 2007 Nucleic Acids Research, 2008, Vol. 36, No. 2 451461 doi:10.1093/nar/gkm1067  

E-Print Network [OSTI]

September 7, 2007; Revised November 11, 2007; Accepted November 12, 2007 ABSTRACT The Chlorella virus RNA poxviruses, reoviruses, alphaviruses, baculoviruses, West Nile virus and Chlorella virus PBCV-1 encode

Perreault, Jean-Pierre

492

This is a pre-print of a manuscript that will appear in: Nucleic Acids Research, 2005, Vol 33, Oxford University Press.  

E-Print Network [OSTI]

Function Prediction Brett Poulin*, Duane Szafron, Russell Greiner, Roman Eisner and Paul Lu *poulin@cs.ualberta.ca BIOINFORMATICS I We use Markov chains as a pre-processing filter for HMM software (HMMER)[2], removing the most

Alberta, University of

493

Published online 11 August 2009 Nucleic Acids Research, 2009, Vol. 37, No. 18 61616173 doi:10.1093/nar/gkp597  

E-Print Network [OSTI]

. N. M. Glover1, * 1 Department of Biochemistry, University of Alberta, Edmonton, Alberta T6G 2H7 whom correspondence should be addressed. Tel: +1 780 492 2136; Fax: +1 780 492 0886; Email: mark.glover

Glover, Mark

494

Formation and Genotoxicity of Novel Oxidatively Generated Tandem DNA Lesions and N2-(1-carboxyethyl)-2'-deoxyguanosine  

E-Print Network [OSTI]

Nucleic Acids Res. 33, 1593-1603. von Sonntag, C. (1987) TheNucleic Acids Res. 33, 1593-1603. Liu, Z. J. , Gao, Y. , andNucleic Acids Res. 33, 1593-1603. Wang, Y. (2008) Bulky DNA

Jiang, Yong

2009-01-01T23:59:59.000Z

495

lexical database from readers -1 Behavioral Research Methods, Instruments and Computers, 36, 156-166.  

E-Print Network [OSTI]

2012 #12;lexical database from readers - 4 INTRODUCTION The history of lexicographical studies based, syllabus design and materials writing. Short history of French language lexical databases Concerninglexical database from readers - 1 Behavioral Research Methods, Instruments and Computers, 36, 156

Paris-Sud XI, Université de

496

Faculty Database Administrator Instructions Spectral Fusion Designs 8/13 Page 1  

E-Print Network [OSTI]

Faculty Database Administrator Instructions Spectral Fusion Designs ­ 8/13 Page 1 Table of Contents.................................................................................................................................4 Add a User to the Faculty Database...........................................................................................................................8 #12;Faculty Database Administrator Instructions Spectral Fusion Designs ­ 8/13 Page 2 Introduction

Chu, Xi

497

SDT: A Database Schema Design and Translation Tool, Reference Manual, Draft 4.1  

E-Print Network [OSTI]

Sciences Division SDT: A Database Schema Design andDE-AC03-76SF00098 :tl F' LB SDT A DATABASE SCHEMA DESIGN ANDof data", ACM Trans. on Database Systems 1,1 (March 1976),

Markowitz, V.M.

2008-01-01T23:59:59.000Z

498

The design and implementation of the buffer manager for an experimental relational database management system  

E-Print Network [OSTI]

Buffer management is an essential component of database management. This thesis presents a design and implementation of the buffer manager for an experimental relational database management system. The relationship and difference between database...

Li, Zaichun

1994-01-01T23:59:59.000Z

499

Upgrade of laser and electron beam welding database  

E-Print Network [OSTI]

The main purpose of this project was to fix existing issues and update the existing database holding parameters of laser-beam and electron-beam welding machines. Moreover, the database had to be extended to hold the data for the new machines that arrived recently at the workshop. As a solution - the database had to be migrated to Oracle framework, the new user interface (using APEX) had to be designed and implemented with the integration with the CERN web services (EDMS, Phonebook, JMT, CDD and EDH).

Furman, Magdalena

2014-01-01T23:59:59.000Z

500

A+M Collisional Databases in ALADDIN Format  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

ALADDIN (A Labelled Atomic Data Interface) is a database system developed in order to provide a standard and flexible format and interface for the exchange and management of atomic, molecular and plasma-material interaction data of interest to fusion research. As part of the Atomic and Molecular Data Information System (AMDIS), introduced by the IAEA Atomic and Molecular Data Unit, the ALADDIN interface is available on-line. Twelve databases from DOE and IAEA sources are available from the CFADC website under the heading A+M Collisional Databases.