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Sample records for link biological systems

  1. Navigation Links Biology News

    E-Print Network [OSTI]

    Espinosa, Horacio D.

    Navigation Links Biology News Medicine News Biology Products Medicine Products Biology Definition Medicine Definition Biology Technology Medicine Technology Biology Dictionary Medicine Dictionary Biology Navigation Medical Navigation MHOME >> BIOLOGY >> NEWS Single-cell transfection tool enables added control

  2. computational modeling of biological systems

    E-Print Network [OSTI]

    $author.value

    Faculty. Faculty listing for "computational modeling of biological systems" ... Research Interests: computational modeling of biological systems.

  3. Gelation in Multiple Link Systems

    E-Print Network [OSTI]

    Kazumi Suematsu

    2005-10-24

    Within the framework of the random distribution assumption of cyclic bonds, the theory of gelation is extended to mixing systems of the R-Ag + R-Bf-g model, which is expected to have wider application such as micell formations in biological systems. We derive the gel point expression of this biologically interesting new system.

  4. Systems biology approach to bioremediation

    E-Print Network [OSTI]

    Chakraborty, R.

    2013-01-01

    aspects of the systems biology approach (metagenomics withthe use of a number of sytems biology parameters can revealRL, Banfield JF: Systems Biology: functional analysis of

  5. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology LANL leads the world in computational finishing of microbial genomes Read caption + In 2013, Los Alamos scientist Richard Sayre and his team...

  6. Home Biology Medicine Technology Products News Definition Dictionary Movies Links Whole Site Goog

    E-Print Network [OSTI]

    Chiao, Jung-Chih

    Home Biology Medicine Technology Products News Definition Dictionary Movies Links Search RSS Whole Site Goog Navigation Links Biology News Medicine News Biology Products Medicine Products Biology Definition Medicine Definition Biology Technology Medicine Technology Biology Dictionary Medicine Dictionary

  7. 7th Annual Systems Biology Symposium: Systems Biology and Engineering

    SciTech Connect (OSTI)

    Galitski, Timothy P.

    2008-04-01

    Systems biology recognizes the complex multi-scale organization of biological systems, from molecules to ecosystems. The International Symposium on Systems Biology has been hosted by the Institute for Systems Biology in Seattle, Washington, since 2002. The annual two-day event gathers the most influential researchers transforming biology into an integrative discipline investingating complex systems. Engineering and application of new technology is a central element of systems biology. Genome-scale, or very small-scale, biological questions drive the enigneering of new technologies, which enable new modes of experimentation and computational analysis, leading to new biological insights and questions. Concepts and analytical methods in engineering are now finding direct applications in biology. Therefore, the 2008 Symposium, funded in partnership with the Department of Energy, featured global leaders in "Systems Biology and Engineering."

  8. Nutritional systems biology of type 2 diabetes

    E-Print Network [OSTI]

    Zhao, Y; Barrere-Cain, RE; Yang, X

    2015-01-01

    HF (2015) Circadian systems biology in Metazoa. BriefingsNutritional systems biology: defini- tions and approaches.PAPER Nutritional systems biology of type 2 diabetes Yuqi

  9. Home Biology Medicine Technology Products News Definition Dictionary Movies Links Tags Search RSS Whole Site Google Search

    E-Print Network [OSTI]

    Espinosa, Horacio D.

    Home Biology Medicine Technology Products News Definition Dictionary Movies Links Tags Search RSS Whole Site Google Search Navigation Links Biology News Medicine News Biology Products Medicine Products Biology Definition Medicine Definition Biology Technology Medicine Technology Biology Dictionary Medicine

  10. Modular design of biological systems

    E-Print Network [OSTI]

    Norville, Julie Erin, 1980-

    2012-01-01

    The focus of my research is the development of technology for building compound biological systems from simpler pieces. I designed BioScaffold parts, a family of variable regions that can be inserted into a DNA sequence ...

  11. Monte Carlo simulation in systems biology

    E-Print Network [OSTI]

    Schellenberger, Jan

    2010-01-01

    2 The history of Monte Carlo Sampling in Systems Biology 1.1simulation tools: the systems biology workbench and biospiceCellular and Molecular Biology. ASM Press, Washington

  12. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformation Current HABFESOpportunities NuclearlongGeneral Tables The GeneralGenomeGenomics

  13. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would likeUniverse (Journalvivo Low-Dose Low LET Ionizing Radiation Exposure:

  14. Systems biology approach to bioremediation

    SciTech Connect (OSTI)

    Chakraborty, R.; Wu, C. H.; Hazen, T. C.

    2012-01-01

    Bioremediation has historically been approached as a ?black box? in terms of our fundamental understanding. Thus it succeeds and fails, seldom without a complete understanding of why. Systems biology is an integrated research approach to study complex biological systems, by investigating interactions and networks at the molecular, cellular, community, and ecosystem level. The knowledge of these interactions within individual components is fundamental to understanding the dynamics of the ecosystem under investigation. Understanding and modeling functional microbial community structure and stress responses in environments at all levels have tremendous implications for our fundamental understanding of hydrobiogeochemical processes and the potential for making bioremediation breakthroughs and illuminating the ?black box?.

  15. Renewable Hydrogen Production from Biological Systems

    Broader source: Energy.gov (indexed) [DOE]

    Hydrogen Production from Biological Systems Matthew Posewitz Colorado School of Mines DOE Biological Hydrogen Production Workshop September 24 th , 2013 H 2 production PSIIPSI...

  16. Adjustable link for kinematic mounting systems

    DOE Patents [OSTI]

    Hale, L.C.

    1997-07-01

    An adjustable link for kinematic mounting systems is disclosed. The adjustable link is a low-cost, passive device that provides backlash-free adjustment along its single constraint direction and flexural freedom in all other directions. The adjustable link comprises two spheres, two sockets in which the spheres are adjustable retain, and a connection link threadly connected at each end to the spheres, to provide a single direction of restraint and to adjust the length or distance between the sockets. Six such adjustable links provide for six degrees of freedom for mounting an instrument on a support. The adjustable link has applications in any machine or instrument requiring precision adjustment in six degrees of freedom, isolation from deformations of the supporting platform, and/or additional structural damping. The damping is accomplished by using a hollow connection link that contains an inner rod and a viscoelastic separation layer between the two. 3 figs.

  17. Adjustable link for kinematic mounting systems

    DOE Patents [OSTI]

    Hale, Layton C. (Livermore, CA)

    1997-01-01

    An adjustable link for kinematic mounting systems. The adjustable link is a low-cost, passive device that provides backlash-free adjustment along its single constraint direction and flexural freedom in all other directions. The adjustable link comprises two spheres, two sockets in which the spheres are adjustable retain, and a connection link threadly connected at each end to the spheres, to provide a single direction of restraint and to adjust the length or distance between the sockets. Six such adjustable links provide for six degrees of freedom for mounting an instrument on a support. The adjustable link has applications in any machine or instrument requiring precision adjustment in six degrees of freedom, isolation from deformations of the supporting platform, and/or additional structural damping. The damping is accomplished by using a hollow connection link that contains an inner rod and a viscoelastic separation layer between the two.

  18. SYSTEMS BIOLOGY Accurate information transmission

    E-Print Network [OSTI]

    Tsimring, Lev S.

    SYSTEMS BIOLOGY Accurate information transmission through dynamic biochemical signaling networks) and variability in cellular states (extrinsic noise) degrade information transmitted through signaling networks-induced information loss. In the extracellular signal­regulated kinase (ERK), calcium (Ca2+ ), and nuclear factor

  19. Computational Modelling in Systems and Synthetic Biology

    E-Print Network [OSTI]

    Romero-Campero, Francisco J.

    modules Networks Cells Colonies Systems Biology and Synthetic Biology #12;Stochasticity is important processes. Executable semantics. o Modularity in cellular systems, especially in gene regulatory networks been successfully applied. Monika Heiner, David Gilbert, Robin Donaldson. Petri Nets for Systems

  20. Systems biology of the cardiac hypoxia response in Drosophila

    E-Print Network [OSTI]

    Feala, Jacob Daniel

    2008-01-01

    in Molecular Systems Biology , volume 3, article number 99,appear in Molecular Systems Biology. The dissertation authoret al. (2003) The systems biology markup language (SBML): a

  1. Systems biology of Microbial Communities

    SciTech Connect (OSTI)

    Navid, A; Ghim, C; Fenley, A; Yoon, S; Lee, S; Almaas, E

    2008-04-11

    Microbes exist naturally in a wide range of environments, spanning the extremes of high acidity and high temperature to soil and the ocean, in communities where their interactions are significant. We present a practical discussion of three different approaches for modeling microbial communities: rate equations, individual-based modeling, and population dynamics. We illustrate the approaches with detailed examples. Each approach is best fit to different levels of system representation, and they have different needs for detailed biological input. Thus, this set of approaches is able to address the operation and function of microbial communities on a wide range of organizational levels.

  2. REVIEW ARTICLE Profile likelihood in systems biology

    E-Print Network [OSTI]

    Timmer, Jens

    REVIEW ARTICLE Profile likelihood in systems biology Clemens Kreutz1,2 , Andreas Raue1,3 , Daniel for Advanced Studies (FRIAS), University of Freiburg, Germany 3 Institute of Bioinformatics and Systems Biology of Freiburg, Germany 5 BIOSS Centre for Biological Signalling Studies, University of Freiburg, Germany

  3. Experiment design for systems biology

    E-Print Network [OSTI]

    Apgar, Joshua Farley

    2009-01-01

    Mechanism-based chemical kinetic models are increasingly being used to describe biological signaling. Such models serve to encapsulate current understanding of pathways and to enable insight into complex biological processes. ...

  4. Systems Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ORNL brings together multidisciplinary expertise and special facilities in genomics, computational biology, plant sciences, microbiology, microbial ecology, biophysics,...

  5. Systems Biology | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ORNL brings together multidisciplinary expertise and special facilities in genomics, computational biology, plant sciences, microbiology, microbial ecology, biophysics,...

  6. A CONSTRAINED OBJECT APPROACH TO SYSTEMS BIOLOGY

    E-Print Network [OSTI]

    Krovi, Venkat

    A CONSTRAINED OBJECT APPROACH TO SYSTEMS BIOLOGY by Manu Pushpendran September 2006 A thesis towards Dr. Daniel Fischer for allowing me to audit his course on Computational Biology which helped me gain significant insights on many biological terms. Special thanks to Dr. Gokul Das from Roswell Park

  7. THE EMERGENCE OF MEANING IN BIOLOGICAL SYSTEMS

    E-Print Network [OSTI]

    THE EMERGENCE OF MEANING IN BIOLOGICAL SYSTEMS THESIS SUBMITTED FOR THE DEGREE OF "DOCTOR OF MEANING IN BIOLOGICAL SYSTEMS THESIS SUBMITTED FOR THE DEGREE OF "DOCTOR OF PHILOSOPHY" BY URI HERSHBERG and what its functions are. Likewise we study the immune system as an example of cognitive perception

  8. Engineering Inspired from biological systems, nanotechnology (and

    E-Print Network [OSTI]

    Chemical Engineering Inspired from biological systems, nanotechnology (and more recently at Northeastern University in Boston. His research explores the use of nanotechnology in numerous applications

  9. Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology

    E-Print Network [OSTI]

    Ussery, David W.

    Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology Visualisation of Large Amounts of Data Dave Ussery 27 February, 2008 #12;Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology #12;Comparative Microbial Genomics group

  10. Method of measurement in biological systems

    DOE Patents [OSTI]

    Turteltaub, K.W.; Vogel, J.S.; Felton, J.S.; Gledhill, B.L.: Davis, J.C.; Stanker, L.H.

    1993-05-11

    A method is disclosed of quantifying molecules in biological substances, comprising: selecting a biological host in which radioisotopes are present in concentrations equal to or less than those in the ambient biosphere; preparing a long-lived radioisotope labeled reactive chemical specie; administering the chemical specie to the biological host in doses sufficiently low to avoid significant overt damage to the biological system; allowing a period of time to elapse sufficient for dissemination and interaction of the chemical specie with the host throughout the biological system of the host; isolating a reacted fraction of the biological substance from the host in a manner sufficient to avoid contamination of the substance from extraneous sources; converting the fraction of biological substance by suitable means to a material which efficiently produces charged ions in at least one of several possible ion sources without introduction of significant isotopic fractionation; and measuring the radioisotope concentration in the material by means of direct isotopic counting.

  11. Complexity and Systems Biology of Microbial Biofuels

    E-Print Network [OSTI]

    Rand, David

    Complexity and Systems Biology of Microbial Biofuels 20-24 June 2011 (All and issues Theme: Biofuel systems and issues (Chair: Nigel Burroughs) 13 (Bielefeld) Biofuels from algae- challenges for industrial levels

  12. Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology

    E-Print Network [OSTI]

    Langmead, Christopher James

    Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology Alexandre Donz. The dynamics of biological processes are often modeled as systems of nonlinear ordinary differential equations problem for nonlinear dynamical systems. That is, for systems of nonlinear ordinary differential equations

  13. Modular languages for systems and synthetic biology 

    E-Print Network [OSTI]

    Pedersen, Michael

    2010-01-01

    Systems biology is a rapidly growing field which seeks a refined quantitative understanding of organisms, particularly studying how molecular species such as metabolites, proteins and genes interact in cells to form the ...

  14. Nov. 21, 1999 Neutron Irradiation Tests of an S-LINK-over-G-link System

    E-Print Network [OSTI]

    Nov. 21, 1999 Neutron Irradiation Tests of an S-LINK-over-G-link System K. Anderson, J. Pilcher, H and was carefully monitored. 2. Neutron Source Characteristics The test was performed at the National Institute, MD 1. Objective This note describes neutron irradiation tests of an S-LINK [1] source card (LSC

  15. Importance of systems biology in engineering microbes for biofuel...

    Office of Scientific and Technical Information (OSTI)

    Importance of systems biology in engineering microbes for biofuel production Citation Details In-Document Search Title: Importance of systems biology in engineering microbes for...

  16. Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress...

    Office of Scientific and Technical Information (OSTI)

    Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses Citation Details In-Document Search Title: Systems biology analysis of Zymomonas mobilis ZM4 ethanol...

  17. Method of measurement in biological systems

    DOE Patents [OSTI]

    Turteltaub, Kenneth W. (Livermore, CA); Vogel, John S. (Union City, CA); Felton, James S. (Danville, CA); Gledhill, Barton L. (Alamo, CA); Davis, Jay C. (Livermore, CA); Stanker, Larry H. (Livermore, CA)

    1993-05-11

    Disclosed is a method of quantifying molecules in biological substances, comprising: a. selecting a biological host in which radioisotopes are present in concentrations equal to or less than those in the ambient biosphere, b. preparing a long-lived radioisotope labeled reactive chemical specie, c. administering said chemical specie to said biological host in doses sufficiently low to avoid significant overt damage to the biological system thereof, d. allowing a period of time to elapse sufficient for dissemination and interaction of said chemical specie with said host throughout said biological system of said host, e. isolating a reacted fraction of the biological substance from said host in a manner sufficient to avoid contamination of said substance from extraneous sources, f. converting said fraction of biological substance by suitable means to a material which efficiently produces charged ions in at least one of several possible ion sources without introduction of significant isotopic fractionation, and, g. measuring the radioisotope concentration in said material by means of direct isotopic counting.

  18. Method of measurement in biological systems

    DOE Patents [OSTI]

    Turteltaub, Kenneth W. (Livermore, CA); Vogel, John S. (Union City, CA); Felton, James S. (Danville, CA); Gledhill, Barton L. (Alamo, CA); Davis, Jay C. (Livermore, CA)

    1994-01-01

    Disclosed is a method of quantifying molecules in biological substances comprising: a. selecting a biological host in which radioisotopes are present in concentrations equal to or less than those in the ambient biosphere, b. preparing a long-lived radioisotope labeled reactive chemical specie, c. administering said chemical specie to said biological host in doses sufficiently low to avoid significant overt damage to the biological system thereof, d. allowing a period of time to elapse sufficient for dissemination and interaction of said chemical specie with said host throughout said biological system of said host, e. isolating a reacted fraction of the biological substance from said host in a manner sufficient to avoid contamination of said substance from extraneous sources, f. converting said fraction of biological substance by suitable means to a material which efficiently produces charged ions in at least one of several possible ion sources without introduction of significant isotopic fractionation, and, g. measuring the radioisotope concentration in said material by means of direct isotopic counting.

  19. Method of measurement in biological systems

    DOE Patents [OSTI]

    Turteltaub, K.W.; Vogel, J.S.; Felton, J.S.; Gledhill, B.L.; Davis, J.C.

    1994-12-27

    Disclosed is a method of quantifying molecules in biological substances comprising: a. selecting a biological host in which radioisotopes are present in concentrations equal to or less than those in the ambient biosphere, b. preparing a long-lived radioisotope labeled reactive chemical specie, c. administering the chemical specie to the biological host in doses sufficiently low to avoid significant overt damage to the biological system, d. allowing a period of time to elapse sufficient for dissemination and interaction of the chemical specie with the host throughout the biological system of the host, e. isolating a reacted fraction of the biological substance from the host in a manner sufficient to avoid contamination of the substance from extraneous sources, f. converting the fraction of biological substance by suitable means to a material which efficiently produces charged ions in at least one of several possible ion sources without introduction of significant isotopic fractionation, and, g. measuring the radioisotope concentration in the material by means of direct isotopic counting. 5 figures.

  20. Document creation, linking, and maintenance system

    DOE Patents [OSTI]

    Claghorn, Ronald (Pasco, WA)

    2011-02-15

    A document creation and citation system designed to maintain a database of reference documents. The content of a selected document may be automatically scanned and indexed by the system. The selected documents may also be manually indexed by a user prior to the upload. The indexed documents may be uploaded and stored within a database for later use. The system allows a user to generate new documents by selecting content within the reference documents stored within the database and inserting the selected content into a new document. The system allows the user to customize and augment the content of the new document. The system also generates citations to the selected content retrieved from the reference documents. The citations may be inserted into the new document in the appropriate location and format, as directed by the user. The new document may be uploaded into the database and included with the other reference documents. The system also maintains the database of reference documents so that when changes are made to a reference document, the author of a document referencing the changed document will be alerted to make appropriate changes to his document. The system also allows visual comparison of documents so that the user may see differences in the text of the documents.

  1. Symbolic Systems Biology: Theory and Methods, Jones and Bartlett Publishers 2010 On Statecharts for Biology

    E-Print Network [OSTI]

    Harel, David

    Symbolic Systems Biology: Theory and Methods, Jones and Bartlett Publishers 2010 On Statecharts for Biology Jasmin Fisher and David Harel Biology as Reactivity One of the central issues in software decade or so, we and others have carried out work on viewing biological systems as reactive systems

  2. Systems Biology of Organs on a Chip John Wikswo

    E-Print Network [OSTI]

    Wikswo, John

    1 Systems Biology of Organs on a Chip John Wikswo Fall, 2013 Undergraduates: PHYS 240 01 and BME 290B -- SpTp: Systems Biology Graduate students: PHYS 326 Theoretical and Experimental Systems Biology BME 395C -- SpTp: Systems Biology Meeting times: 2:35 ­ 3:50 Tuesdays and Thursdays, SC6837

  3. Edinburgh Research Explorer A framework for evolutionary systems biology

    E-Print Network [OSTI]

    Millar, Andrew J.

    Edinburgh Research Explorer A framework for evolutionary systems biology Citation for published version: Loewe, L 2009, 'A framework for evolutionary systems biology' BMC Systems Biology, vol 3, 27., 10 Systems Biology Publisher Rights Statement: © 2009 Loewe; licensee BioMed Central Ltd. This is an Open

  4. Integrating systems biology models and biomedical ontologies

    E-Print Network [OSTI]

    Hoehndorf, Robert; Dumontier, Michel; Gennari, John H.; Wimalaratne, Sarala; de Bono, Bernard; Cook, Daniel L.; Gkoutos, Georgios V.

    2011-08-11

    Integrating systems biology models and biomedical ontologies Robert Hoehndorf1*, Michel Dumontier2,3, John H Gennari4, Sarala Wimalaratne5, Bernard de Bono5, Daniel L Cook6,7 and Georgios V Gkoutos1 Abstract Background: Systems biology is an approach... in yeast [19] and includes a compartment anno- tated with Nucleus that contains, among others, the spe- cies G1, G2, S and M annotated with G1 phase, G2 phase, S phase and M phase, respectively. Within the model, the amounts of these species can be either 0...

  5. The Science Institutes at Yale's West Campus Chemical Biology Cancer Biology Energy Sciences Microbial Diversity Nanobiology Systems Biology

    E-Print Network [OSTI]

    The Science Institutes at Yale's West Campus Chemical Biology Cancer Biology Energy Sciences Microbial Diversity Nanobiology Systems Biology The Chemical Biology Institute at Yale's West Campus #12 and molecular assem- blies, large and small, to address challenging problems in health, energy

  6. Adding Links in Energy.gov Content Management System

    Broader source: Energy.gov [DOE]

    For Office of Energy Efficiency and Renewable Energy (EERE) websites, to add a link in the Energy.gov Drupal content management system (CMS), follow these steps.

  7. Computational Challenges in Systems Biology Allison P. Heatha

    E-Print Network [OSTI]

    Kavraki, Lydia E.

    Computational Challenges in Systems Biology Allison P. Heatha , Lydia E. Kavrakia,b,c a Department computational and experimental approaches to provide a system level understanding of biologi- cal function. Initial forays into computational systems biology have focused on a variety of biological networks

  8. Systems Biology of the JAK-STAT signalling pathway

    E-Print Network [OSTI]

    Timmer, Jens

    Systems Biology of the JAK-STAT signalling pathway Jens Timmer Center for Systems Biology Center of Freiburg http://www.fdm.uni-freiburg.de/jeti/ 1 #12;Outline · Systems Biology · JAK-STAT pathway of the Epo receptor · A dynamical model for JAK-STAT pathway · Observing the unobservable · In silico biology

  9. Biochemistry & Molecular Biology Department of Environmental and Biomolecular Systems

    E-Print Network [OSTI]

    Chapman, Michael S.

    Biochemistry & Molecular Biology Department of Environmental and Biomolecular Systems Program Requirement Checklists Fall 2007 ­ Summer 2008 Master of Science ­ Biochemistry and Molecular Biology.............................................................2 Doctor of Philosophy ­ Biochemistry and Molecular Biology

  10. Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would likeUniverseIMPACTThousand CubicResourcelogo and-E C H2015TrayDevices - Useful Links

  11. Computational systems biology and in silico modeling of the

    E-Print Network [OSTI]

    Borenstein, Elhanan

    Computational systems biology and in silico modeling of the human microbiome Elhanan Borenstein Professor at the Santa Fe Institute. His research interests include computational and evolutionary systems is a complex biological system with numerous interacting components across multiple organizational levels

  12. Method for photo-altering a biological system to improve biological effect

    DOE Patents [OSTI]

    Hill, Richard A. (Irvine, CA); Doiron, Daniel R. (Santa Ynez, CA); Crean, David H. (Santa Barbara, CA)

    2000-08-01

    Photodynamic therapy is a new adjunctive therapy for filtration surgery that does not use chemotherapy agents or radiation, but uses pharmacologically-active sensitizing compounds to produce a titratable, localized, transient, post operative avascular conjunctiva. A photosensitizing agent in a biological system is selectively activated by delivering the photosensitive agent to the biological system and laser activating only a spatially selected portion of the delivered photosensitive agent. The activated portion of the photosensitive agent reacts with the biological system to obtain a predetermined biological effect. As a result, an improved spatial disposition and effectuation of the biological effect by the photosensitive agent in the biological system is achieved.

  13. Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D Ew A

  14. Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would likeUniverseIMPACTThousand CubicResourcelogo and-E C H2015TrayDevices -

  15. KPFM and PFM of Biological Systems

    SciTech Connect (OSTI)

    Rodriguez, Brian [University College, Dublin; Kalinin, Sergei V [ORNL

    2011-01-01

    Surface potentials and electrostatic interactions in biological systems are a key element of cellular regulation and interaction. Examples include cardiac and muscular activity, voltage-gated ion channels, protein folding and assembly, and electroactive cells and electrotransduction. The coupling between electrical, mechanical, and chemical signals and responses in cellular systems necessitates the development of tools capable of measuring the distribution of charged species, surface potentials, and mechanical responses to applied electrical stimuli and vice versa, ultimately under physiological conditions. In this chapter, applications of voltage-modulated atomic force microscopy (AFM) methods including Kelvin probe force microscopy (KPFM) and piezoresponse force microscopy (PFM) to biological systems are discussed. KPFM is a force-sensitive non-contact or intermittent-contact mode AFM technique that allows electrostatic interactions and surface potentials to be addressed. Beyond long-range electrostatic interactions, the application of bias can lead to a mechanical response, e.g., due to linear piezoelectric coupling in polar biopolymers or via more complex electrotransduction and redox pathways in other biosystems. The use and development of PFM, based on direct electromechanical detection, to biological systems will also be addressed. The similarities and limitations of measuring surface potentials and electromechanical coupling in solution will be outlined.

  16. Simulation Methods for Optimal Experimental Design in Systems Biology

    E-Print Network [OSTI]

    Timmer, Jens

    Simulation Methods for Optimal Experimental Design in Systems Biology D. Faller Freiburg Center of a biological system, the authors conducted quantitative dynamic experiments from which the system structure and the parameters have to be deduced. Since biological systems have to cope with different environmental conditions

  17. Complex biological and bio-inspired systems

    SciTech Connect (OSTI)

    Ecke, Robert E [Los Alamos National Laboratory

    2009-01-01

    The understanding and characterization ofthe fundamental processes of the function of biological systems underpins many of the important challenges facing American society, from the pathology of infectious disease and the efficacy ofvaccines, to the development of materials that mimic biological functionality and deliver exceptional and novel structural and dynamic properties. These problems are fundamentally complex, involving many interacting components and poorly understood bio-chemical kinetics. We use the basic science of statistical physics, kinetic theory, cellular bio-chemistry, soft-matter physics, and information science to develop cell level models and explore the use ofbiomimetic materials. This project seeks to determine how cell level processes, such as response to mechanical stresses, chemical constituents and related gradients, and other cell signaling mechanisms, integrate and combine to create a functioning organism. The research focuses on the basic physical processes that take place at different levels ofthe biological organism: the basic role of molecular and chemical interactions are investigated, the dynamics of the DNA-molecule and its phylogenetic role are examined and the regulatory networks of complex biochemical processes are modeled. These efforts may lead to early warning algorithms ofpathogen outbreaks, new bio-sensors to detect hazards from pathomic viruses to chemical contaminants. Other potential applications include the development of efficient bio-fuel alternative-energy processes and the exploration ofnovel materials for energy usages. Finally, we use the notion of 'coarse-graining,' which is a method for averaging over less important degrees of freedom to develop computational models to predict cell function and systems-level response to disease, chemical stress, or biological pathomic agents. This project supports Energy Security, Threat Reduction, and the missions of the DOE Office of Science through its efforts to accurately model biological systems at the molecular and cellular level. The project's impact encompasses applications to biofuels, to novel sensors and to materials with broad use for energy or threat reduction. The broad, interdisciplinary approach of CNLS offers the unparalleled strength of combining science backgrounds and expertise -a unique and important asset in attacking the complex science of biological organisms. This approach also allows crossfertilization, with concepts and techniques transferring across field boundaries.

  18. Incorporating Optics into a Coupled Physical-Biological Forecasting System in the Monterey Bay

    E-Print Network [OSTI]

    Boss, Emmanuel S.

    Incorporating Optics into a Coupled Physical-Biological Forecasting System in the Monterey Bay Fei://www.marine.maine.edu/~eboss/index.html http://ourocean.jpl.nasa.gov/ LONG-TERM GOALS Modeling and predicting ocean optical properties for coastal waters requires linking optical properties with the physical, chemical, and biological processes

  19. Progress in Biophysics and Molecular Biology 97 (2008) 115157 Scale relativity theory and integrative systems biology

    E-Print Network [OSTI]

    Nottale, Laurent

    2008-01-01

    Progress in Biophysics and Molecular Biology 97 (2008) 115­157 Review Scale relativity theory and integrative systems biology: 2 Macroscopic quantum-type mechanics Laurent Nottalea,b , Charles Auffrayb Meudon, France b Functional Genomics and Systems Biology for Health, UMR 7091-LGN, CNRS/Pierre & Marie

  20. Fast Concurrent Dynamic Linking for an Adaptive Operating System

    E-Print Network [OSTI]

    Walpole, Jonathan

    Fast Concurrent Dynamic Linking for an Adaptive Operating System Crispin Cowan, Tito Autrey operating system is one that can adapt to some particular circumstance to gain some functional or perfor due to the cost of inter-process protection barriers. Commercial operating systems that can e ciently

  1. The Science Institutes at Yale's West Campus Energy Sciences Cancer Biology Chemical Biology Microbial Diversity Nanobiology Systems Biology

    E-Print Network [OSTI]

    Microbial Diversity Nanobiology Systems Biology The Energy Sciences Institute at Yale's West Campus #12The Science Institutes at Yale's West Campus Energy Sciences Cancer Biology Chemical Biology;#12;T he need for cheap, abundant energy is among the defining issues of our time. In the twentieth

  2. The Science Institutes at Yale's West Campus Nanobiology Cancer Biology Chemical Biology Energy Sciences Microbial Diversity Systems Biology

    E-Print Network [OSTI]

    The Science Institutes at Yale's West Campus Nanobiology Cancer Biology Chemical Biology Energy Sciences Microbial Diversity Systems Biology The Nanobiology Institute at Yale's West Campus #12;#12;I n energy. The potential for discovery is extraordinary. Yale scientists are exploring a new frontier within

  3. Title of dissertation: NONLINEAR DYNAMICS IN BIOLOGICAL SYSTEMS

    E-Print Network [OSTI]

    Anlage, Steven

    ABSTRACT Title of dissertation: NONLINEAR DYNAMICS IN BIOLOGICAL SYSTEMS: ACTIN NETWORKS AND GENE in several cases. #12;NONLINEAR DYNAMICS IN BIOLOGICAL SYSTEMS: ACTIN NETWORKS AND GENE NETWORKS by Andrew Department of Physics Two problems in biological systems are studied: (i) experiments in microscale

  4. Modeling biological systems using Petri nets wimbos@gmail.com

    E-Print Network [OSTI]

    Theune, Mariët

    to Petri nets, they allow for different abstraction levels, making it possible to model biological networksModeling biological systems using Petri nets Wim Bos wimbos@gmail.com ABSTRACT Petri Nets (PNs) biological systems, or networks. As a lot of extensions to PNs exist, it is possible to model different

  5. Lessons Learned from Quantitative Dynamical Modeling in Systems Biology

    E-Print Network [OSTI]

    Timmer, Jens

    Lessons Learned from Quantitative Dynamical Modeling in Systems Biology Andreas Raue1,2 *. , Marcel of Physics, University of Freiburg, Freiburg, Germany, 2 Institute of Computational Biology, Helmholtz Center, Munich, Germany, 3 Systems Biology of Signal Transduction, German Cancer Research Center

  6. Some new directions in control theory inspired by systems biology

    E-Print Network [OSTI]

    Sontag, Eduardo

    Some new directions in control theory inspired by systems biology E.D. Sontag Abstract: This paper new theoretical problems arise naturally when addressing questions in the field of systems biology are in the midst of revolutionary developments in the biological sciences. Literally each day brings new dis

  7. Assessing computational methods and science policy in systems biology

    E-Print Network [OSTI]

    Castillo, Andrea R. (Andrea Redwing)

    2009-01-01

    In this thesis, I discuss the development of systems biology and issues in the progression of this science discipline. Traditional molecular biology has been driven by reductionism with the belief that breaking down a ...

  8. Cross-Linking and Mass Spectrometry Methodologies to Facilitate Structural Biology: Finding a Path through the Maze

    SciTech Connect (OSTI)

    Merkley, Eric D.; Cort, John R.; Adkins, Joshua N.

    2013-09-01

    Multiprotein complexes, rather than individual proteins, make up a large part of the biological macromolecular machinery of a cell. Understanding the structure and organization of these complexes is critical to understanding cellular function. Chemical cross-linking coupled with mass spectrometry is emerging as a complementary technique to traditional structural biology methods and can provide low-resolution structural information for a multitude of purposes, such as distance constraints in computational modeling of protein complexes. In this review, we discuss the experimental considerations for successful application of chemical cross-linking-mass spectrometry in biological studies and highlight three examples of such studies from the recent literature. These examples (as well as many others) illustrate the utility of a chemical cross-linking-mass spectrometry approach in facilitating structural analysis of large and challenging complexes.

  9. Theory: Biological systems organize to maximize entropy production subject to information and biophysicochemical constraints.

    E-Print Network [OSTI]

    Vallino, Joseph J.

    Theory: Biological systems organize to maximize entropy production subject to information: biological systems store information within their metagenome. Therefore, we propose that abiotic systems that biological systems with greater information content will have higher entropy production rates than biological

  10. Using Systems Biology Approaches to Elucidate the Mechanisms of Arsenic Reduction in Shewanella Sp. ANA-3

    E-Print Network [OSTI]

    Watson, Ruth Pamela Tilus

    2015-01-01

    Towards environmental systems biology of Shewanella. Nature2009). Comparative systems biology across an evolutionaryfor sequence count data. Genome Biology 11, R106–R106. doi:

  11. The BioASP Library: ASP Solutions for Systems Biology

    E-Print Network [OSTI]

    Schaub, Torsten

    The BioASP Library: ASP Solutions for Systems Biology Martin Gebser, Arne K¨onig, Torsten Schaub--Today's molecular biology is confronted with enor- mous amounts of data, generated by new high-throughput tech- nologies, along with an increasing number of biological models available over web repositories. This poses

  12. The Evolutionary Systems Biology Team Synthetic Biology/Citizen Science Post-doctoral position

    E-Print Network [OSTI]

    The Evolutionary Systems Biology Team Synthetic Biology/Citizen Science Post-doctoral position We in citizen science projects.The post-doc will join the extended CRI lab that includes synthetic and systems-sourcing, DIY approaches and gamification as part of a new European- funded project, Citizen CyberLab - a three

  13. "Creating computational models of biological systems to better combat

    E-Print Network [OSTI]

    Zhigilei, Leonid V.

    "Creating computational models of biological systems to better combat dangerous pathogens and human of Biomedical Engineering University of Virginia Charlottesville, VA 434.924.8195 Computational Systems Biology system in biofuel and nutraceutical production. With the aid of computational techniques, we can predict

  14. Genomics and Systems Biology of Tuberculosis (2009 JGI User Meeting)

    ScienceCinema (OSTI)

    Galagan, James

    2011-04-25

    James Galagan from the Broad Institute spoke about the "Genomics and Systems Biology of TB" on March 26, 2009 during the 4th Annual User Meeting

  15. Linking Automated Data Analysis and Visualization with Applications in Developmental Biology and High-Energy Physics

    SciTech Connect (OSTI)

    Ruebel, Oliver

    2009-12-01

    Knowledge discovery from large and complex collections of today's scientific datasets is a challenging task. With the ability to measure and simulate more processes at increasingly finer spatial and temporal scales, the increasing number of data dimensions and data objects is presenting tremendous challenges for data analysis and effective data exploration methods and tools. Researchers are overwhelmed with data and standard tools are often insufficient to enable effective data analysis and knowledge discovery. The main objective of this thesis is to provide important new capabilities to accelerate scientific knowledge discovery form large, complex, and multivariate scientific data. The research covered in this thesis addresses these scientific challenges using a combination of scientific visualization, information visualization, automated data analysis, and other enabling technologies, such as efficient data management. The effectiveness of the proposed analysis methods is demonstrated via applications in two distinct scientific research fields, namely developmental biology and high-energy physics.Advances in microscopy, image analysis, and embryo registration enable for the first time measurement of gene expression at cellular resolution for entire organisms. Analysis of high-dimensional spatial gene expression datasets is a challenging task. By integrating data clustering and visualization, analysis of complex, time-varying, spatial gene expression patterns and their formation becomes possible. The analysis framework MATLAB and the visualization have been integrated, making advanced analysis tools accessible to biologist and enabling bioinformatic researchers to directly integrate their analysis with the visualization. Laser wakefield particle accelerators (LWFAs) promise to be a new compact source of high-energy particles and radiation, with wide applications ranging from medicine to physics. To gain insight into the complex physical processes of particle acceleration, physicists model LWFAs computationally. The datasets produced by LWFA simulations are (i) extremely large, (ii) of varying spatial and temporal resolution, (iii) heterogeneous, and (iv) high-dimensional, making analysis and knowledge discovery from complex LWFA simulation data a challenging task. To address these challenges this thesis describes the integration of the visualization system VisIt and the state-of-the-art index/query system FastBit, enabling interactive visual exploration of extremely large three-dimensional particle datasets. Researchers are especially interested in beams of high-energy particles formed during the course of a simulation. This thesis describes novel methods for automatic detection and analysis of particle beams enabling a more accurate and efficient data analysis process. By integrating these automated analysis methods with visualization, this research enables more accurate, efficient, and effective analysis of LWFA simulation data than previously possible.

  16. Quantum integrable systems. Quantitative methods in biology

    E-Print Network [OSTI]

    Giovanni Feverati

    2011-01-19

    Quantum integrable systems have very strong mathematical properties that allow an exact description of their energetic spectrum. From the Bethe equations, I formulate the Baxter "T-Q" relation, that is the starting point of two complementary approaches based on nonlinear integral equations. The first one is known as thermodynamic Bethe ansatz, the second one as Kl\\"umper-Batchelor-Pearce-Destri- de Vega. I show the steps toward the derivation of the equations for some of the models concerned. I study the infrared and ultraviolet limits and discuss the numerical approach. Higher rank integrals of motion can be obtained, so gaining some control on the eigenvectors. After, I discuss the Hubbard model in relation to the N = 4 supersymmetric gauge theory. The Hubbard model describes hopping electrons on a lattice. In the second part, I present an evolutionary model based on Turing machines. The goal is to describe aspects of the real biological evolution, or Darwinism, by letting evolve populations of algorithms. Particularly, with this model one can study the mutual transformation of coding/non coding parts in a genome or the presence of an error threshold. The assembly of oligomeric proteins is an important phenomenon which interests the majority of proteins in a cell. I participated to the creation of the project "Gemini" which has for purpose the investigation of the structural data of the interfaces of such proteins. The objective is to differentiate the role of amino acids and determine the presence of patterns characterizing certain geometries.

  17. Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark

    E-Print Network [OSTI]

    Ussery, David W.

    Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark Burkholderia Pan-genomics Dave Ussery Max Planck Institut fur Terrestrial Microbiology Marburg, Germany 26 May, 2008 - or - What can we learn from more than 50 sequenced genomes? #12;Comparative Microbial Genomics

  18. Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark

    E-Print Network [OSTI]

    Ussery, David W.

    Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark E. coli pangenomics - or - How to compare hundreds of E. coli genomes Fuzzy Dave Ussery Ullevĺl Universitetssykehus Oslo, Norway Wednesday, 10 December, 2008 #12;Comparative Microbial Genomics group Centerfor

  19. Micromechanics of engineered and biological systems G K ANANTHASURESH1

    E-Print Network [OSTI]

    Giri, Ranjit K.

    are microsystems (microelectromechanical systems ­ MEMS), microfluidic devices, and biological cells. Mechanics: microsystems (microelectromechanical systems ­ MEMS ­ as they are popularly known), microfluidics, and bio' rather than `MEMS' because the latter is restrictive as it only conveys mechanical and electrical aspects

  20. REU MENTORS & THEIR RESEARCH PROJECTS JONATHAN ARNOLD (Genetics) systems biology of the biological clock

    E-Print Network [OSTI]

    Arnold, Jonathan

    , innate defense mechanisms, and genome stability. djgarf@bmb.uga.edu TONY GLYNN (USDA) ­ Fungal genomics). Evolutionary systems biology, comparative genomics, protein structure, function and evolution. kannan & Institute of Bioinformatics) Microbial comparative genomics, prokaryotic genome composition, structure

  1. Chemical Genetics: Elucidating Biological Systems with Small-Molecule Compounds

    E-Print Network [OSTI]

    Nghiem, Paul

    Chemical Genetics: Elucidating Biological Systems with Small-Molecule Compounds Masaoki Kawasumi1 and Paul Nghiem1,2 Chemical genetics employs diverse small-molecule compounds to elucidate biological chemical genetic approach, whereas the reverse approach involves small molecules targeting a single protein

  2. Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAudits & InspectionsBeryllium andSamplerBiological Imaging byU.S.

  3. Optimal control for biological movement systems

    E-Print Network [OSTI]

    Li, Weiwei

    2006-01-01

    discrete time nonlinear dynamical system with state variablecontrol of nonlinear dynamical systems. We illustrated itsConsider the nonlinear dynamical system described by the

  4. The common ground of genomics and systems biology

    E-Print Network [OSTI]

    Conesa, Ana; Mortazavi, Ali

    2014-01-01

    8/S2. Authors’ details Genomics of Gene Expression Lab,systems biology. Annu Rev. Genomics Hum. Genet 2001, 2:343-projection strategies. Genomics 2008, 92(6):373-83. 31.

  5. BE568: Computational Systems Biology of Human SPRING 2014

    E-Print Network [OSTI]

    Vajda, Sandor

    , proteomic analysis, next-generation sequencing, machine learning, #12;elementary genetics relevant to disease mechanisms, systems biology of disease, diagnosis, prognosis, personalized medicine or network based drug design. The course also aims to teach

  6. Computational Proteomics: High-throughput Analysis for Systems Biology

    SciTech Connect (OSTI)

    Cannon, William R.; Webb-Robertson, Bobbie-Jo M.

    2007-01-03

    High-throughput (HTP) proteomics is a rapidly developing field that offers the global profiling of proteins from a biological system. The HTP technological advances are fueling a revolution in biology, enabling analyses at the scales of entire systems (e.g., whole cells, tumors, or environmental communities). However, simply identifying the proteins in a cell is insufficient for understanding the underlying complexity and operating mechanisms of the overall system. Systems level investigations are relying more and more on computational analyses, especially in the field of proteomics generating large-scale global data.

  7. Systems Biology Approaches and Applications in Obesity, Diabetes, and Cardiovascular Diseases

    E-Print Network [OSTI]

    Meng, Q; Mäkinen, VP; Luk, H; Yang, X

    2013-01-01

    studies and systems biology: together at last. Trends Genet:pro- teomics and network biology. Annu Rev Biochem. 2012;81:genomics- and network- driven systems biology approaches for

  8. On the complete determination of biological systems

    E-Print Network [OSTI]

    Church, George M.

    projects to create computational models that are, in some sense, complete. However, the details of what that contribute to the engineering, reverse-engineering or modification of a system). The defining feature advances in medicine, biotechnology and basic research. Moreover, systems level descriptions promise

  9. Biological optimization systems for enhancing photosynthetic efficiency and methods of use

    DOE Patents [OSTI]

    Hunt, Ryan W; Chinnasamy, Senthil; Das, Keshav C; Rolim de Mattos, Erico

    2014-02-25

    The present disclosure relates to biological optimization systems for enhancing photosynthetic efficiency and methods of use.

  10. Application of Modern Filtering Techniques for 3D Localisation in Biological and Robotic Systems

    E-Print Network [OSTI]

    Application of Modern Filtering Techniques for 3D Localisation in Biological and Robotic Systems Application of Modern Filtering Techniques for 3D Localisation in Biological and Robotic Systems Kudah C system . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 2.2 Robotic system

  11. NREL's early demonstration of"systems biochemistry" links traditional and emerging biochemistry with modern

    E-Print Network [OSTI]

    NREL's early demonstration of"systems biochemistry" links traditional and emerging biochemistry to be an early demonstration of systems biochemistry that can join together traditional and emerging biochemistry

  12. Request for Travel Funds for Systems Radiation Biology Workshop

    SciTech Connect (OSTI)

    Barcellos-Hoff, Mary Helen

    2014-03-22

    The 3rd International Systems Radiation Biology Workshop brought together the major European, US and Japanese research programs on radiation risk as well as selected experts representing systems biological approaches to discuss how the new methodologies could be best exploited for low dose research. A significant part of the workshop was devoted to discussions organised as breakout group sessions. To facilitate discussions number of participants was limited to 60 persons. To achieve the goals of this symposium in this international conference, support from DOE is vital. Hence, this proposal requested support in the amount of $15,000 to cover the travel expenses of international experts and radiation biology scientists from the United States. This supporting mechanism was clearly identified to the selected US participants as a conference support award from the DOE (See attached PDF). The workshop was an outstanding opportunity to strengthen interactions between leading experts in the emerging areas of radiation sciences, and will also provide opportunities for younger scientists to meet with experts and discuss their results. This workshop was designed to endorse active engagement in international collaboration. A major objective of this conference was to effectively communicate research results, in order to ensure that current thinking reflects sound science of radiation biology. Further, this international event addressed the use and success of scientific initiatives in radiation biology for policymakers, standard-setters, and the general public.

  13. Environmental Noise and Nonlinear Relaxation in Biological Systems

    E-Print Network [OSTI]

    B. Spagnolo; D. Valenti; S. Spezia; L. Curcio; N. Pizzolato; A. A. Dubkov; A. Fiasconaro; D. Persano Adorno; P. Lo Bue; E. Peri; S. Colazza

    2011-12-17

    We analyse the effects of environmental noise in three different biological systems: (i) mating behaviour of individuals of \\emph{Nezara viridula} (L.) (Heteroptera Pentatomidae); (ii) polymer translocation in crowded solution; (iii) an ecosystem described by a Verhulst model with a multiplicative L\\'{e}vy noise.

  14. Systems Biology Knowledgebase for a New Era in Biology A Genomics:GTL Report from the May 2008 Workshop

    SciTech Connect (OSTI)

    Gregurick, S.; Fredrickson, J. K.; Stevens, R.

    2009-03-01

    Biology has entered a systems-science era with the goal to establish a predictive understanding of the mechanisms of cellular function and the interactions of biological systems with their environment and with each other. Vast amounts of data on the composition, physiology, and function of complex biological systems and their natural environments are emerging from new analytical technologies. Effectively exploiting these data requires developing a new generation of capabilities for analyzing and managing the information. By revealing the core principles and processes conserved in collective genomes across all biology and by enabling insights into the interplay between an organism's genotype and its environment, systems biology will allow scientific breakthroughs in our ability to project behaviors of natural systems and to manipulate and engineer managed systems. These breakthroughs will benefit Department of Energy (DOE) missions in energy security, climate protection, and environmental remediation.

  15. Enabling a Systems Biology Knowledgebase with Gaggle and Firegoose

    SciTech Connect (OSTI)

    Baliga, Nitin S.

    2014-12-12

    The overall goal of this project was to extend the existing Gaggle and Firegoose systems to develop an open-source technology that runs over the web and links desktop applications with many databases and software applications. This technology would enable researchers to incorporate workflows for data analysis that can be executed from this interface to other online applications. The four specific aims were to (1) provide one-click mapping of genes, proteins, and complexes across databases and species; (2) enable multiple simultaneous workflows; (3) expand sophisticated data analysis for online resources; and enhance open-source development of the Gaggle-Firegoose infrastructure. Gaggle is an open-source Java software system that integrates existing bioinformatics programs and data sources into a user-friendly, extensible environment to allow interactive exploration, visualization, and analysis of systems biology data. Firegoose is an extension to the Mozilla Firefox web browser that enables data transfer between websites and desktop tools including Gaggle. In the last phase of this funding period, we have made substantial progress on development and application of the Gaggle integration framework. We implemented the workspace to the Network Portal. Users can capture data from Firegoose and save them to the workspace. Users can create workflows to start multiple software components programmatically and pass data between them. Results of analysis can be saved to the cloud so that they can be easily restored on any machine. We also developed the Gaggle Chrome Goose, a plugin for the Google Chrome browser in tandem with an opencpu server in the Amazon EC2 cloud. This allows users to interactively perform data analysis on a single web page using the R packages deployed on the opencpu server. The cloud-based framework facilitates collaboration between researchers from multiple organizations. We have made a number of enhancements to the cmonkey2 application to enable and improve the integration within different environments, and we have created a new tools pipeline for generating EGRIN2 models in a largely automated way.

  16. Booly : a new data integration platform for systems biology

    E-Print Network [OSTI]

    Do, Long Hoang

    2010-01-01

    for enabling conceptual biology. Bioinformatics 2005, 21for data integration in biology. Trends Biotechnol 1999, 17(the unification of biology. The Gene Ontology Consortium.

  17. Biology

    E-Print Network [OSTI]

    Bailey, Charlotte M

    Nightty Enrichment} is a FREE tutoring program to neip students succeed in ?rst year. Biology science courses. CUSINE offers eyening tutoring right in your own ...

  18. Biological Computation as the Revolution of Complex Engineered Systems

    E-Print Network [OSTI]

    Gómez-Cruz, Nelson Alfonso

    2011-01-01

    Provided that there is no theoretical frame for complex engineered systems (CES) as yet, this paper claims that bio-inspired engineering can help provide such a frame. Within CES bio-inspired systems play a key role. The disclosure from bio-inspired systems and biological computation has not been sufficiently worked out, however. Biological computation is to be taken as the processing of information by living systems that is carried out in polynomial time, i.e., efficiently; such processing however is grasped by current science and research as an intractable problem (for instance, the protein folding problem). A remark is needed here: P versus NP problems should be well defined and delimited but biological computation problems are not. The shift from conventional engineering to bio-inspired engineering needs bring the subject (or problem) of computability to a new level. Within the frame of computation, so far, the prevailing paradigm is still the Turing-Church thesis. In other words, conventional engineering...

  19. Efficient Bayesian estimates for discrimination among topologically different systems biology models

    E-Print Network [OSTI]

    Hagen, David Robert

    A major effort in systems biology is the development of mathematical models that describe complex biological systems at multiple scales and levels of abstraction. Determining the topology—the set of interactions—of a ...

  20. Use of the Classroom Management Link System (CMLS) Across Multiple Classrooms

    E-Print Network [OSTI]

    Lee, Steven W.; Shepard, Courtney

    2013-08-01

    The purpose of this study was to determine the effect of the Classroom Management Link System (CMLS) across classrooms using a multiple baseline design. CMLS is a preventive system that uses rule development, self-monitoring, goal setting...

  1. Separation of noise from distortion for high-speed optical fiber system link budgeting

    E-Print Network [OSTI]

    Hui, Rongqing; Vaziri, M.; Zhou, J.; O'Sullivan, M.

    1999-07-01

    In optical transmission systems and networks with in-line optical amplifiers, system performance degradations caused by random noise and optical path distortions are usually thought to he inseparable, which makes link performance evaluation...

  2. Biological Micro-Electrical Mechanical Systems Micro-electrical mechanical systems (MEMS) created new

    E-Print Network [OSTI]

    Hill, Wendell T.

    Biological Micro-Electrical Mechanical Systems (bioMEMS) Micro-electrical mechanical systems (MEMS beginning to be explored. bioMEMS combine the potential of cell-sized systems with the advantages in cutting edge research in bioMEMS to revolutionize mechanized drug discovery processes, non- invasive

  3. Research Positions in Big Data Computational Biology Department of Computational and Systems Biology

    E-Print Network [OSTI]

    Benos, Takis

    Research Positions in Big Data Computational Biology Department of Computational and clinical data related to melanoma and chronic lung diseases. The ideal, and will have research experience in computational biology. 2. One Data Scientist

  4. Tools and reference standards supporting the engineering and evolution of synthetic biological systems

    E-Print Network [OSTI]

    Kelly, Jason R. (Jason Robert)

    2008-01-01

    Biological engineers have constructed a number of multi-part synthetic biological systems that conduct logical operations on input signals, produce oscillatory output signals, store memory, or produce desired products. ...

  5. Earth System Modeling Facility: Linking Climate to Cal-(IT)2 and OptIPuter

    E-Print Network [OSTI]

    Rose, Michael R.

    Earth System Modeling Facility: Linking Climate to Cal-(IT)2 and OptIPuter Charlie Zender in quantitatively-based environmental planning. #12;1. Overview Present: 1. Earth System Modeling Facility (ESMF) 2 and Planning #12;2. Earth System Modeling Facility (ESMF) Background: In 2003, NSF, UCI, & IGPP awarded $1.3M

  6. A Dynamical Systems Analysis of the Data Assimilation Linked Ecosystem Carbon (DALEC) Models

    E-Print Network [OSTI]

    Skeldon, Anne C.

    A Dynamical Systems Analysis of the Data Assimilation Linked Ecosystem Carbon (DALEC) Models Anna M make it ever more important to understand the processes involved in Earth systems, such as the carbon with it the ability to perform ever- more detailed studies of the Earth system and its components. Such studies help

  7. Computational and Systems Biology DOI: 10.1039/b921381n

    E-Print Network [OSTI]

    Babu, M. Madan

    Computational and Systems Biology DOI: 10.1039/b921381n Over the last few decades, we have all in this themed issue of Molecular BioSystems entitled ``Computational and Systems Biology''. The excitement contains papers that use contemporary computational and systems approaches that involve analysis

  8. Biologically-based signal processing system applied to noise removal for signal extraction

    DOE Patents [OSTI]

    Fu, Chi Yung; Petrich, Loren I.

    2004-07-13

    The method and system described herein use a biologically-based signal processing system for noise removal for signal extraction. A wavelet transform may be used in conjunction with a neural network to imitate a biological system. The neural network may be trained using ideal data derived from physical principles or noiseless signals to determine to remove noise from the signal.

  9. Colouring Space -A Coloured Framework for Spatial Modelling in Systems Biology

    E-Print Network [OSTI]

    Gilbert, David

    , hy- brid Petri nets, spatial modelling, biomolecular networks, Systems Biology, BioModel Engineering- tributes of dynamic systems using coloured Petri nets and show how it can be applied to biological systems for the uncoloured family of Petri net classes. Keywords: Coloured Petri nets, qualitative, stochastic, continuous

  10. Parameter Discovery for Stochastic Computational Models in Systems Biology Using Bayesian Model

    E-Print Network [OSTI]

    Parameter Discovery for Stochastic Computational Models in Systems Biology Using Bayesian Model--Parameterized probabilistic complex computational (P2 C2 ) models are increasingly used in computational systems biology to study biochemical and physiological systems. A key challenge is to build mechanistic P2 C2 models

  11. Systems Biology in Prokaryote - Eukaryote Symbiosis | Stanford Synchrotron

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservationBio-Inspired Solar Fuel Production 1:PhysicsSyndicated Content SystemRadiation

  12. Embedded calibration system for the DIII-D Langmuir probe analog fiber optic links

    SciTech Connect (OSTI)

    Watkins, J. G. [Sandia National Laboratories, Livermore, California (United States); Rajpal, R.; Mandaliya, H. [Institute for Plasma Research, Bhat, Gandhinagar, Gujarat (India); Watkins, M.; Boivin, R. L. [General Atomics, San Diego, California (United States)

    2012-10-15

    This paper describes a generally applicable technique for simultaneously measuring offset and gain of 64 analog fiber optic data links used for the DIII-D fixed Langmuir probes by embedding a reference voltage waveform in the optical transmitted signal before every tokamak shot. The calibrated data channels allow calibration of the power supply control fiber optic links as well. The array of fiber optic links and the embedded calibration system described here makes possible the use of superior modern data acquisition electronics in the control room.

  13. The OME Framework for genome-scale systems biology

    SciTech Connect (OSTI)

    Palsson, Bernhard O.; Ebrahim, Ali; Federowicz, Steve

    2014-12-19

    The life sciences are undergoing continuous and accelerating integration with computational and engineering sciences. The biology that many in the field have been trained on may be hardly recognizable in ten to twenty years. One of the major drivers for this transformation is the blistering pace of advancements in DNA sequencing and synthesis. These advances have resulted in unprecedented amounts of new data, information, and knowledge. Many software tools have been developed to deal with aspects of this transformation and each is sorely needed [1-3]. However, few of these tools have been forced to deal with the full complexity of genome-scale models along with high throughput genome- scale data. This particular situation represents a unique challenge, as it is simultaneously necessary to deal with the vast breadth of genome-scale models and the dizzying depth of high-throughput datasets. It has been observed time and again that as the pace of data generation continues to accelerate, the pace of analysis significantly lags behind [4]. It is also evident that, given the plethora of databases and software efforts [5-12], it is still a significant challenge to work with genome-scale metabolic models, let alone next-generation whole cell models [13-15]. We work at the forefront of model creation and systems scale data generation [16-18]. The OME Framework was borne out of a practical need to enable genome-scale modeling and data analysis under a unified framework to drive the next generation of genome-scale biological models. Here we present the OME Framework. It exists as a set of Python classes. However, we want to emphasize the importance of the underlying design as an addition to the discussions on specifications of a digital cell. A great deal of work and valuable progress has been made by a number of communities [13, 19-24] towards interchange formats and implementations designed to achieve similar goals. While many software tools exist for handling genome-scale metabolic models or for genome-scale data analysis, no implementations exist that explicitly handle data and models concurrently. The OME Framework structures data in a connected loop with models and the components those models are composed of. This results in the first full, practical implementation of a framework that can enable genome-scale design-build-test. Over the coming years many more software packages will be developed and tools will necessarily change. However, we hope that the underlying designs shared here can help to inform the design of future software.

  14. System-Level Design: A Missing Link? Durward K. Sobek, II

    E-Print Network [OSTI]

    Sobek II, Durward K.

    the market and develop many styling alternatives. All gradually eliminate alternatives until a final design1 System-Level Design: A Missing Link? Durward K. Sobek, II Department of Mechanical and Industrial; however, from a design process standpoint, the differences are relatively few. 2 All carmakers study

  15. Linking Satellite Ammonia Retrievals with the AIRPACT Air Quality Modeling System.

    E-Print Network [OSTI]

    Collins, Gary S.

    Linking Satellite Ammonia Retrievals with the AIRPACT Air Quality Modeling System. 1 Ayrton Bryan program under grant number 0754990 Introduction Ammonia (NH3) is an important atmospheric pollutant to retrieve ammonia spectra and derive nadir profiles. AIRPACT (Air Indicator Report for Public Awareness

  16. Chalmers Publication Library Evaluation of Link Adaptation Methods in Multi-User OFDM Systems with

    E-Print Network [OSTI]

    Chalmers Publication Library Evaluation of Link Adaptation Methods in Multi-User OFDM Systems with Imperfect Channel State Information This document has been downloaded from Chalmers Publication Library (CPL Publication Library (CPL) offers the possibility of retrieving research publications produced at Chalmers

  17. Analysis and design of high frequency link power conversion systems for fuel cell power conditioning 

    E-Print Network [OSTI]

    Song, Yu Jin

    2005-11-01

    simulations and experiments, and their trade-offs are described in detail using mathematical evaluation approach. The third study proposes a current-fed high frequency link direct dc-ac converter suitable for residential fuel cell power systems. The high...

  18. Amino : a domestic system for synthetic biology and continuous culturing

    E-Print Network [OSTI]

    Legault, Julie, S.M. Massachusetts Institute of Technology

    2015-01-01

    With the ability to transfer a trait from one creature to another purposefully, synthetic biology is advancing across unforeseen domains. From algae cells that convert carbon dioxide to fuel, biocementation bacteria to ...

  19. The Need for Biological Computation System Models | GE Global...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    2012.10.09 Hello everyone, I'm Maria Zavodszky and I work in the Computational Biology and Biostatistics Lab at GE Global Research in Niskayuna, New York. This being our...

  20. Improving Power System Modeling. A Tool to Link Capacity Expansion and Production Cost Models

    SciTech Connect (OSTI)

    Diakov, Victor; Cole, Wesley; Sullivan, Patrick; Brinkman, Gregory; Margolis, Robert

    2015-11-01

    Capacity expansion models (CEM) provide a high-level long-term view at the prospects of the evolving power system. In simulating the possibilities of long-term capacity expansion, it is important to maintain the viability of power system operation in the short-term (daily, hourly and sub-hourly) scales. Production-cost models (PCM) simulate routine power system operation on these shorter time scales using detailed load, transmission and generation fleet data by minimizing production costs and following reliability requirements. When based on CEM 'predictions' about generating unit retirements and buildup, PCM provide more detailed simulation for the short-term system operation and, consequently, may confirm the validity of capacity expansion predictions. Further, production cost model simulations of a system that is based on capacity expansion model solution are 'evolutionary' sound: the generator mix is the result of logical sequence of unit retirement and buildup resulting from policy and incentives. The above has motivated us to bridge CEM with PCM by building a capacity expansion - to - production cost model Linking Tool (CEPCoLT). The Linking Tool is built to onset capacity expansion model prescriptions onto production cost model inputs. NREL's ReEDS and Energy Examplar's PLEXOS are the capacity expansion and the production cost models, respectively. Via the Linking Tool, PLEXOS provides details of operation for the regionally-defined ReEDS scenarios.

  1. Enhanced visible and near-infrared capabilities of the JET mirror-linked divertor spectroscopy system

    SciTech Connect (OSTI)

    Lomanowski, B. A. Sharples, R. M.; Meigs, A. G.; Conway, N. J.; Zastrow, K.-D.; Heesterman, P.; Kinna, D. [EURATOM Collaboration: JET-EFDA Team

    2014-11-15

    The mirror-linked divertor spectroscopy diagnostic on JET has been upgraded with a new visible and near-infrared grating and filtered spectroscopy system. New capabilities include extended near-infrared coverage up to 1875 nm, capturing the hydrogen Paschen series, as well as a 2 kHz frame rate filtered imaging camera system for fast measurements of impurity (Be II) and deuterium D?, D?, D? line emission in the outer divertor. The expanded system provides unique capabilities for studying spatially resolved divertor plasma dynamics at near-ELM resolved timescales as well as a test bed for feasibility assessment of near-infrared spectroscopy.

  2. On Mechanical Transitions in Biologically Motivated Soft Matter Systems

    E-Print Network [OSTI]

    Fogle, Craig Alton

    2015-01-01

    3.3 . . . . . 3.D Review of the statistical mechanics ofJ. Rehner. “Statistical Mechanics of Cross-Linked PolymerJ. Rehner. “Statistical Mechanics of Cross-Linked Polymer

  3. APPALACHIAN LABORATORY CHESAPEAKE BIOLOGICAL LABORATORY HORN POINT LABORATORY AN INSTITUTION OF THE UNIVERSITY SYSTEM OF MARYLAND

    E-Print Network [OSTI]

    Boynton, Walter R.

    APPALACHIAN LABORATORY CHESAPEAKE BIOLOGICAL LABORATORY HORN POINT LABORATORY AN INSTITUTION. of Budget and Management Please fax this form to: 410-333-7122 UMCES Agency #12;APPALACHIAN LABORATORY CHESAPEAKE BIOLOGICAL LABORATORY HORN POINT LABORATORY AN INSTITUTION OF THE UNIVERSITY SYSTEM OF MARYLAND

  4. December 1, 2014 TO: Department Chairs in the College of Engineering, Biological Systems Engineering,

    E-Print Network [OSTI]

    Sheridan, Jennifer

    Engineering, Chemistry, Computer Sciences, Geoscience, Mathematics, Physics, and Statistics Dean's OfficeDecember 1, 2014 TO: Department Chairs in the College of Engineering, Biological Systems of Engineering FROM: Ian M. Robertson, Dean RE: Harvey Spangler Award for Technology Enhanced Instruction

  5. DOE Systems Biology Knowledgebase (KBASE) (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Arkin, Adam [LBNL

    2013-01-15

    Adam Arkin from Berkeley Lab on the DOE Systems Biology Knowledgebase (KBASE) at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

  6. DOE Systems Biology Knowledgebase (KBASE) (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Arkin, Adam [LBNL] [LBNL

    2012-03-21

    Adam Arkin from Berkeley Lab on the DOE Systems Biology Knowledgebase (KBASE) at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

  7. Techniques for Probing the Processes by Which Microwaves Interact with Chemical and Biological Systems 

    E-Print Network [OSTI]

    Kay, Philip E

    2007-01-01

    Microwave heating is a relatively mature field and is theoretically well understood. However, recently there has been debate as to whether microwaves can interact with chemical and biological systems by means other than ...

  8. Building the DOE Systems Biology Knowledgebase (KBase) ( 7th Annual SFAF Meeting, 2012)

    ScienceCinema (OSTI)

    Brettin, Tom [Oak Ridge National Laboratory

    2013-03-22

    Tom Brettin on "Building the DOE Systems Biology Knowledgebase (KBase)" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

  9. Linking home energy rating systems with energy efficiency financing: Progress on national and state programs

    SciTech Connect (OSTI)

    Farhar, B.C.; Collins, N.E.; Walsh, R.W.

    1996-10-01

    In 1991 and early 1992, the U.S. Department of Energy (DOE), in cooperation with the U.S. Department of Housing and Urban Development (HUD), established a National Collaborative on Home Energy Rating Systems (HERS) and Energy Efficient Mortgages (EEMs). The Collaborative's purpose was to involve stakeholders at a national policy level to develop a plan leading the nation toward a voluntary system linking HERS with EEMs. The National Renewable Energy Laboratory (NREL) coordinated the National Collaborative's meetings for DOE. Composed of representatives from 25 stakeholder organizations, the Collaborative, after some 14 meetings, reached consensus on two documents, both published by NREL in mg 1992: A National Program for Energy-Efficient Mortgages and Home Energy Rating Systems: A Blueprint for Action and Going National with HERS and EEMs: Issues and Impacts, The Collected Papers of the National Collaborative.

  10. A Systems Biology Approach to Infectious Disease Research: Innovating the Pathogen-Host Research Paradigm

    SciTech Connect (OSTI)

    Aderem, Alan; Adkins, Joshua N.; Ansong, Charles; Galagan, James; Kaiser, Shari; Korth, Marcus J.; Law, G. L.; McDermott, Jason E.; Proll, Sean; Rosenberger, Carrie; Schoolnik, Gary; Katze, Michael G.

    2011-02-01

    The 20th century was marked by extraordinary advances in our understanding of microbes and infectious disease, but pandemics remain, food and water borne illnesses are frequent, multi-drug resistant microbes are on the rise, and the needed drugs and vaccines have not been developed. The scientific approaches of the past—including the intense focus on individual genes and proteins typical of molecular biology—have not been sufficient to address these challenges. The first decade of the 21st century has seen remarkable innovations in technology and computational methods. These new tools provide nearly comprehensive views of complex biological systems and can provide a correspondingly deeper understanding of pathogen-host interactions. To take full advantage of these innovations, the National Institute of Allergy and Infectious Diseases recently initiated the Systems Biology Program for Infectious Disease Research. As participants of the Systems Biology Program we think that the time is at hand to redefine the pathogen-host research paradigm.

  11. 7.91J / 7.36J / 20.490J Foundations of Computational and Systems Biology, Spring 2004

    E-Print Network [OSTI]

    Burge, Christopher

    Serving as an introduction to computational biology, this course emphasizes the fundamentals of nucleic acid and protein sequence analysis, structural analysis, and the analysis of complex biological systems. The principles ...

  12. Method And System For Examining Biological Materials Using Low Power Cw Excitation Raman Spectroscopy.

    DOE Patents [OSTI]

    Alfano, Robert R. (Bronx, NY); Wang, Wubao (Flushing, NY)

    2003-05-06

    A method and system for examining biological materials using low-power cw excitation Raman spectroscopy. A low-power continuous wave (cw) pump laser beam and a low-power cw Stokes (or anti-Stokes) probe laser beam simultaneously illuminate a biological material and traverse the biological material in collinearity. The pump beam, whose frequency is varied, is used to induce Raman emission from the biological material. The intensity of the probe beam, whose frequency is kept constant, is monitored as it leaves the biological material. When the difference between the pump and probe excitation frequencies is equal to a Raman vibrational mode frequency of the biological material, the weak probe signal becomes amplified by one or more orders of magnitude (typically up to about 10.sup.4 -10.sup.6) due to the Raman emission from the pump beam. In this manner, by monitoring the intensity of the probe beam emitted from the biological material as the pump beam is varied in frequency, one can obtain an excitation Raman spectrum for the biological material tested. The present invention may be applied to in the in vivo and/or in vitro diagnosis of diabetes, heart disease, hepatitis, cancers and other diseases by measuring the characteristic excitation Raman lines of blood glucose, cholesterol, serum glutamic oxalacetic transaminase (SGOT)/serum glutamic pyruvic transaminase (SGPT), tissues and other corresponding Raman-active body constituents, respectively.

  13. Renewable Hydrogen Production from Biological Systems | Department of

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on Delicious RankADVANCED MANUFACTURINGEnergy BillsNo. 195 - Oct.

  14. A Systems Biology Platform for Characterizing Regulatory and Metabolic

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield Municipal GasAdministrationTechnicalTechnicalScience.gov

  15. Comparative systems biology across an evolutionary gradient within the

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfate Reducing BacteriaConnect Collider Tests of the

  16. Modular microfluidic system for biological sample preparation (Patent) |

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfate Reducing(JournalspectroscopyReport)Fermentative Activity

  17. Spontaneous Neural Firing in Biological & Artificial Neural Systems Christian R. Huyck and Richard Bowles

    E-Print Network [OSTI]

    Huyck, Chris

    Spontaneous Neural Firing in Biological & Artificial Neural Systems Christian R. Huyck and Richard of spontaneous neural activation may actually improve the system. Spontaneous neural firing can attenuate neural for a long period (relative to their normal firing rate), typically several milliseconds. When a neuron has

  18. Bond Computing Systems: a Biologically Inspired and High-level Dynamics Model for Pervasive Computing

    E-Print Network [OSTI]

    Dang, Zhe

    Bond Computing Systems: a Biologically Inspired and High-level Dynamics Model for Pervasive their com- putation power and verification problems. Among other results, we show that the computing power) techniques for pervasive computing systems. At a high-level, there are at least two views in modeling

  19. Bond Computing Systems: a Biologically Inspired and High-level Dynamics Model for Pervasive Computing

    E-Print Network [OSTI]

    Dang, Zhe

    Bond Computing Systems: a Biologically Inspired and High-level Dynamics Model for Pervasive. Targeting at modeling the high-level dynamics of pervasive comput- ing systems, we introduce Bond Computing are regular, and study their computation power and verification problems. Among other results, we show

  20. Thermodynamics for Systems Biology Peter Salamon, Anna Salamon, and Andrzej Konopka

    E-Print Network [OSTI]

    Salamon, Peter

    1 Thermodynamics for Systems Biology Peter Salamon, Anna Salamon, and Andrzej Konopka Department to thermodynamics designed specifically for the needs of the systems biologist. It departs from modern treatments of the subject that have to do with modeling, i.e. to communicate thermodynamics as a body of worldviews, methods

  1. Exploring the free-energy landscapes of biological systems with steered molecular dynamics

    E-Print Network [OSTI]

    Chen, Liao Y.

    1 Exploring the free-energy landscapes of biological systems with steered molecular dynamics fluctuation-dissipation-theorem (BD -FDT) to accurately compute the free-energy profiles for several compute the free-energy profiles for all the afore-listed systems that represent various important aspects

  2. A Systems Biology Platform for Characterizing Regulatory and Metabolic

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield MunicipalTechnicalInformation4563 LLNL(Technical Report) |(Conference)Resilience toArticle)

  3. Importance of systems biology in engineering microbes for biofuel

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfate Reducing(Journal Article)lasers(Journal Article) |SciTechphysicalNH3Report)whole

  4. Importance of systems biology in engineering microbes for biofuel

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfate Reducing(Journal Article)lasers(Journal Article) |SciTechphysicalNH3Report)wholeproduction

  5. Modular microfluidic system for biological sample preparation (Patent) |

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfate Reducing(JournalspectroscopyReport)Fermentative ActivitySciTech Connect Modular microfluidic

  6. Edinburgh Research Explorer Computational models in systems biology

    E-Print Network [OSTI]

    Millar, Andrew J.

    called process algebras and Petri nets offer alternative ways of constructing computational systems networks in an abstract way that is independent of particular mathe- matical techniques of analysis. Access

  7. IntegromeDB: an integrated system and biological search engine

    E-Print Network [OSTI]

    Baitaluk, Michael; Kozhenkov, Sergey; Dubinina, Yulia; Ponomarenko, Julia

    2012-01-01

    Wright A: Searching the Deep Web. CACM 2008, 51(10):14-15.a semantic, graph based, ‘deep web’ data integration systemIntegromeDB to tap into the Deep Web, the portion of the web

  8. Nonlinear stochastic system identification techniques for biological tissues/

    E-Print Network [OSTI]

    Chen, Yi, S.M. Massachusetts Institute of Technology

    2010-01-01

    This research develops a device capable of measuring the nonlinear dynamic mechanical properties of human tissue in vivo. The enabling technology is the use of nonlinear stochastic system identification techniques in ...

  9. Phys 597A: Graphs and Networks in Systems Biology

    E-Print Network [OSTI]

    Albert, Réka

    systems have an underlying network topology · nodes: routers, hosts · edges: wires, cables, wireless Q Q: What is the nature of edges? Internet, router level Internet, domain level #12;Map

  10. Optimal Size for Maximal Energy Efficiency in Information Processing of Biological Systems Due to Bistability

    E-Print Network [OSTI]

    Zhang, Chi; Wang, Long-Fei; Yue, Yuan; Yu, Lian-Chun

    2015-01-01

    Energy efficiency is closely related to the evolution of biological systems and is important to their information processing. In this paper, we calculated the excitation probability of a simple model of a bistable biological unit in response to pulsatile inputs, and its spontaneous excitation rate due to noise perturbation. Then we analytically calculated the mutual information, energy cost, and energy efficiency of an array of these bistable units. We found that the optimal number of units could maximize this array's energy efficiency in encoding pulse inputs, which depends on the fixed energy cost. We conclude that demand for energy efficiency in biological systems may strongly influence the size of these systems under the pressure of natural selection.

  11. Biology is the study of life. Biologists analyze how systems function in organisms at the cellular and molecular levels

    E-Print Network [OSTI]

    Saldin, Dilano

    Biology is the study of life. Biologists analyze how systems function in organisms at the cellular and public sectors. People with degrees in biology are needed in areas as diverse as farming, food processing, and the environment, as well as in the biomedical and biotechnology fields. A degree in biology can also be used

  12. System for monitoring an industrial or biological process

    DOE Patents [OSTI]

    Gross, K.C.; Wegerich, S.W.; Vilim, R.B.; White, A.M.

    1998-06-30

    A method and apparatus are disclosed for monitoring and responding to conditions of an industrial process. Industrial process signals, such as repetitive manufacturing, testing and operational machine signals, are generated by a system. Sensor signals characteristic of the process are generated over a time length and compared to reference signals over the time length. The industrial signals are adjusted over the time length relative to the reference signals, the phase shift of the industrial signals is optimized to the reference signals and the resulting signals output for analysis by systems such as SPRT. 49 figs.

  13. System for monitoring an industrial or biological process

    DOE Patents [OSTI]

    Gross, Kenneth C. (Argonne, IL); Wegerich, Stephan W. (Argonne, IL); Vilim, Rick B. (Argonne, IL); White, Andrew M. (Skokie, IL)

    1998-01-01

    A method and apparatus for monitoring and responding to conditions of an industrial process. Industrial process signals, such as repetitive manufacturing, testing and operational machine signals, are generated by a system. Sensor signals characteristic of the process are generated over a time length and compared to reference signals over the time length. The industrial signals are adjusted over the time length relative to the reference signals, the phase shift of the industrial signals is optimized to the reference signals and the resulting signals output for analysis by systems such as SPRT.

  14. Coherent and Noncoherent Photonic Communications in Biological Systems

    E-Print Network [OSTI]

    S. Mayburov

    2009-09-14

    The possible mechanisms of communications between distant bio-systems by means of optical and UV photons are studied. It is argued that their main production mechanism is owed to the biochemical reactions, occurring during the cell division.. In the proposed model the bio-systems perform such communications, radiating the photons in form of short periodic bursts, which were observed experimentally for fish and frog eggs1. For experimentally measured photon rates the communication algorithm is supposedly similar to the exchange of binary encoded data in computer net via optical channels

  15. Optimiziing the laboratory monitoring of biological wastewater-purification systems

    SciTech Connect (OSTI)

    S.V. Gerasimov [OAO Koks, Kemerovo (Russian Federation)

    2009-05-15

    Optimization of the laboratory monitoring of biochemical wastewater-treatment systems at coke plants is considered, for the example of OAO Koks. By adopting a methodological approach to determine the necessary data from chemical analysis, it is possible to reduce the time, labor, and materials required for monitoring, without impairing the purification process or compromising the plant's environmental policies.

  16. Smart Sensing Strategies: Insights from a Biological Active Sensing System

    E-Print Network [OSTI]

    Nelson, Mark E.

    of smart sensing systems in diverse engineering applications. Certain freshwater fish from South America and Africa, known as weakly electric fish, use self-generated electrical energy to actively probe their environment. The fish emit millivolt-level electrical discharges and detect microvolt-level voltage

  17. Method And System For Examining Biological Materials Using Low Power Cw Excitation Raman Spectroscopy.

    DOE Patents [OSTI]

    Alfano, Robert R. (Bronx, NY); Wang, Wubao (Flushing, NY)

    2000-11-21

    A method and system for examining biological materials using low-power cw excitation Raman spectroscopy. In accordance with the teachings of the invention, a low-power continuous wave (cw) pump laser beam and a low-power cw Stokes (or anti-Stokes) probe laser beam simultaneously illuminate a biological material and traverse the biological material in collinearity. The pump beam, whose frequency is varied, is used to induce Raman emission from the biological material. The intensity of the probe beam, whose frequency is kept constant, is monitored as it leaves the biological material. When the difference between the pump and probe excitation frequencies is equal to a Raman vibrational mode frequency of the biological material, the weak probe signal becomes amplified by one or more orders of magnitude (typically up to about 10.sup.4 -10.sup.6) due to the Raman emission from the pump beam. In this manner, by monitoring the intensity of the probe beam emitted from the biological material as the pump beam is varied in frequency, one can obtain an excitation Raman spectrum for the biological material tested. The present invention may be applied to in the in vivo and/or in vitro diagnosis of diabetes, heart disease, hepatitis, cancers and other diseases by measuring the characteristic excitation Raman lines of blood glucose, cholesterol, serum glutamic oxalacetic transaminase (SGOT)/serum glutamic pyruvic tansaminase (SGPT), tissues and other corresponding Raman-active body constituents, respectively. For example, it may also be used to diagnose diseases associated with the concentration of Raman-active constituents in urine, lymph and saliva It may be used to identify cancer in the breast, cervix, uterus, ovaries and the like by measuring the fingerprint excitation Raman spectra of these tissues. It may also be used to reveal the growing of tumors or cancers by measuring the levels of nitric oxide in tissue.

  18. Economic analysis of the daylight-linked lighting control system in office buildings

    SciTech Connect (OSTI)

    Yang, In-Ho; Nam, Eun-Ji [Department of Architectural Engineering, College of Engineering, Dongguk University, 26-3, Pil-dong, Chung-gu, Seoul 100-715 (Korea)

    2010-08-15

    The objective of this study is to perform an economic analysis of the daylight-linked automatic on/off lighting control system installed for the purpose of energy savings in office buildings. For this, a building was chosen as a typical example, and the energy cost was calculated by using the daylight and building energy analysis simulation. When the lighting control was utilized, an economic analysis was performed using a payback period that was calculated by comparing the initial cost of installing the lighting control system with the annual energy cost which was reduced thanks to the application of the lighting control. The results showed that the lighting energy consumption, when the lighting control was applied, was reduced by an average of 30.5% compared with the case that there was not lighting control applied. Also, the result for total energy consumption showed that, when lighting control was applied, this was reduced by 8.5% when the glazing ratio was 100%, 8.2% for 80%, and 7.6% for 60% when compared to non-application. The payback period was analyzed in terms of the number of floors in a building; 10 floors, 20 floors, 30 floors, and 40 floors. Hence, the building with 40 floors and glazing ratio 100% resulted in the shortest payback period of 8.8 years, the building with 10 floors and glazing ratio 60% resulted in the longest period of 12.7 years. In other words, the larger the glazing ratio and the number of building floors are, the shorter the payback period is. (author)

  19. Toward Systems Biology in Brown Algae to Explore Acclimation and Adaptation to the Shore Environment

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Toward Systems Biology in Brown Algae to Explore Acclimation and Adaptation to the Shore,2 Catherine Boyen,1,2 and Anne Siegel4,5 Abstract Brown algae belong to a phylogenetic lineage distantly siliculosus as a model organism for brown algae has represented a framework in which several omics techniques

  20. Building the "Popper Machine": A Necessary Research Goal for Systems Biology

    E-Print Network [OSTI]

    Breitling, Rainer

    Building the "Popper Machine": A Necessary Research Goal for Systems Biology Rainer Breitling Plant that they require further formalization and automation, including (1) standardized and comprehensive representation of experimental evidence used for model building, addressing issues of reliability and consistency, (2) model

  1. Proposed Renewal of the Harvard/MIT DOE GTL Systems Biology Center 2007-2012

    E-Print Network [OSTI]

    Church, George M.

    Proposed Renewal of the Harvard/MIT DOE GTL Systems Biology Center 2007-2012 CONTENTS I1 of Metabolic Analysis Models and Evolution S6: Genomic structure, metagenomics, horizontal gene transfer-SysBio renewal proposal is configured to either stand alone with existing collaborations or to potentially act

  2. 8 Prospects for Biological Carbon Sinks in Greenhouse Gas Emissions Trading Systems

    E-Print Network [OSTI]

    8 Prospects for Biological Carbon Sinks in Greenhouse Gas Emissions Trading Systems John Reilly1. With emissions trading, emitters who found they could cheaply reduce their emissions might have allowances- ing Australia, Canada, Japan and Russia. This group also pushed strongly for inter- national emissions

  3. Final report for Conference Support Grant "From Computational Biophysics to Systems Biology - CBSB12"

    SciTech Connect (OSTI)

    Hansmann, Ulrich H.E.

    2012-07-02

    This report summarizes the outcome of the international workshop �From Computational Biophysics to Systems Biology (CBSB12)� which was held June 3-5, 2012, at the University of Tennessee Conference Center in Knoxville, TN, and supported by DOE through the Conference Support Grant 120174. The purpose of CBSB12 was to provide a forum for the interaction between a data-mining interested systems biology community and a simulation and first-principle oriented computational biophysics/biochemistry community. CBSB12 was the sixth in a series of workshops of the same name organized in recent years, and the second that has been held in the USA. As in previous years, it gave researchers from physics, biology, and computer science an opportunity to acquaint each other with current trends in computational biophysics and systems biology, to explore venues of cooperation, and to establish together a detailed understanding of cells at a molecular level. The conference grant of $10,000 was used to cover registration fees and provide travel fellowships to selected students and postdoctoral scientists. By educating graduate students and providing a forum for young scientists to perform research into the working of cells at a molecular level, the workshop adds to DOE's mission of paving the way to exploit the abilities of living systems to capture, store and utilize energy.

  4. Beyond reductionism: metabolic circularity as a guiding vision for a real biology of systems

    E-Print Network [OSTI]

    Beyond reductionism: metabolic circularity as a guiding vision for a real biology of systems Athel advances, for example for creating artificial life or for taking biotechnology beyond the level and metabolome is conceptually artificial--however useful it may be in practice--as the proteome is part

  5. Biologically inspired artificial haircell sensors Today's engineering systems, such as machines, vehicles, robots, medical devices, home

    E-Print Network [OSTI]

    Valero-Cuevas, Francisco

    of polymer MEMS to enable simple sensor packaging and sensor-electronics integration. Short Bio: Chang LiuTitle: Biologically inspired artificial haircell sensors Abstract: Today's engineering systems, such as machines, vehicles, robots, medical devices, home appliances and entertainment devices, are often sensor

  6. Interaction of biological systems with static and ELF electric and magnetic fields

    SciTech Connect (OSTI)

    Anderson, L.E.; Kelman, B.J.; Weigel, R.J. (eds.)

    1987-01-01

    Although background levels of atmospheric electric and geomagnetic field levels are extremely low, over the past several decades, human beings and other life forms on this planet have been subjected to a dramatically changing electromagnetic milieu. An exponential increase in exposure to electromagnetic fields has occurred, largely because of such technological advances as the growth of electrical power generation and transmission systems, the increased use of wireless communications, and the use of radar. In addition, electromagnetic field generating devices have proliferated in industrial plants, office buildings, homes, public transportation systems, and elsewhere. Although significant increases have occurred in electromagnetic field strenghths spanning all frequency ranges, this symposium addresses only the impact of these fields at static and extremely low frequencies (ELF), primarily 50 and 60 Hz. This volume contains the proceedings of the symposium entitled /open quotes/Interaction of biological systems with static and ELF electric and magnetic fields/close quotes/. The purpose of the symposium was to provide a forum for discussions of all aspects of research on the interaction of static and ELF electromagnetic fields with biological systems. These systems include simple biophysical models, cell and organ preparations, whole animals, and man. Dosimetry, exposure system design, and artifacts in ELF bioeffects research were also addressed, along with current investigations that examine fundamental mechanisms of interactions between the fields and biological processes. Papers are indexed separately.

  7. EDITOR OF CONFERENCE PROCEEDINGS: 17. Health Monitoring of Structural and Biological Systems 2011 , Ed. T. Kundu, Pub.

    E-Print Network [OSTI]

    Wong, Pak Kin

    EDITOR OF CONFERENCE PROCEEDINGS: 17. Health Monitoring of Structural and Biological Systems 2011/NDE, March 7-10, 2011, San Diego, California, Vol. 7984, 2011 16. Health Monitoring of Structural 9780819475558, 2009. 14. Health Monitoring of Structural and Biological Systems 2008 , Ed. T. Kundu, Pub. SPIE

  8. Nanoscale Electromechanics of Ferroelectric and Biological Systems: A New Dimension in Scanning Probe Microscopy

    SciTech Connect (OSTI)

    Kalinin, Sergei V [ORNL; Rodriguez, Brian J [ORNL; Jesse, Stephen [ORNL; Karapetian, Edgar [ORNL; Mirman, B [Suffolk University, Boston; Eliseev, E. A. [National Academy of Science of Ukraine, Kiev, Ukraine; Morozovska, A. N. [National Academy of Science of Ukraine, Kiev, Ukraine

    2007-01-01

    Functionality of biological and inorganic systems ranging from nonvolatile computer memories and microelectromechanical systems to electromotor proteins and cellular membranes is ultimately based on the intricate coupling between electrical and mechanical phenomena. In the past decade, piezoresponse force microscopy (PFM) has been established as a powerful tool for nanoscale imaging, spectroscopy, and manipulation of ferroelectric and piezoelectric materials. Here, we give an overview of the fundamental image formation mechanism in PFM and summarize recent theoretical and technological advances. In particular, we show that the signal formation in PFM is complementary to that in the scanning tunneling microscopy (STM) and atomic force microscopy (AFM) techniques, and we discuss the implications. We also consider the prospect of extending PFM beyond ferroelectric characterization for quantitative probing of electromechanical behavior in molecular and biological systems and high-resolution probing of static and dynamic polarization switching processes in low-dimensional ferroelectric materials and heterostructures.

  9. Investigating asparagine-linked protein glycosylation in eukaryotic and prokaryotic systems

    E-Print Network [OSTI]

    Weerapana, Eranthie

    2006-01-01

    N-linked protein glycosylation is characterized by the formation of a -glycosylamine linkage to an asparagine residue within the Asn-Xaa-Ser/Thr consensus sequence. This modification is found in organisms from eukaryotic, ...

  10. Investigation of asparagine-linked glycosylation in archaeal and bacterial systems

    E-Print Network [OSTI]

    Larkin, Angelyn (Angelyn Kathryne)

    2011-01-01

    Asparagine-linked protein glycosylation entails the stepwise assembly of an oligosaccharide onto a polyisoprenyl diphosphate carrier, followed by the en bloc transfer of the glycan onto acceptor proteins by oligosaccharyl ...

  11. Frontiers of Plant Cell Biology: Signals and Pathways, System-Based Approaches 22nd Symposium in Plant Biology (University of California-Riverside)

    SciTech Connect (OSTI)

    Minorsky, Peter V.

    2003-06-01

    The symposium ''Frontiers of Plant Cell Biology: Signals and Pathways, Systems-Based Approaches'' was held January 15-18, 2003 at the Riverside Convention Center in Riverside, California. The host organization for the symposium was the Center for Plant Cell Biology (CEPCEB) at the University of California, Riverside (UCR). The meeting, focusing on systems-based approaches to plant cell biology research, was the first of this kind in the field of plant biology. The speakers and nearly 100 posters placed emphasis on recent developments in plant cellular biology and molecular genetics, particularly those employing emerging genomic tools, thereby sharing the most current knowledge in the field and stimulating future advances. In attendance were many well-established scientists and young investigators who approach plant cell biology from different but complementary conceptual and technical perspectives. Indeed, many disciplines are converging in the field of cell biology, producing synergies that will enable plant scientists to determine the function of gene products in the context of living cells in whole organisms. New, cross-disciplinary collaborations, as well as the involvement of computer scientists and chemists in plant biology research, are likely additional outcomes of the symposium. The program included 39 invited session speakers and workshop/panel speakers. Sessions were convened on the following themes: Cell-Cell Communication; Protein Trafficking; Cell Surface, Extracellular Matrix and Cell Wall; Signal Transduction; Signal Transduction and Proteosome; and Systems-Based Approaches to Plant Cell Biology. Workshops on Chemical Genetics and Visual Microscopy were also presented. Abstracts from each of the speaker presentations, as well as the posters presented at the meeting were published in a program booklet given to the 239 faculty members, researchers, postdoctoral scientists and graduate students in attendance. The booklet thus serves as a reference for symposium attendees to locate additional information about a topic of their particular interest and to contact other investigators. In addition, an article reviewing the symposium by science writer Peter V. Minorsky appeared in the June 2003 issue of Plant Physiology, a special issue devoted to systems-based approaches in the study of the model plant Arabidopsis (article submitted as part of this Final Technical Report).

  12. Theory in Biology Computational

    E-Print Network [OSTI]

    Goldbeter, Albert

    Magazine R601 Theory in Biology Computational biology: A propagating wave of interest Albert Goldbeter Systems biology, computational biology, integrative biology... many names are being used and tendency to take a global view of problems in biology. This field is not entirely novel, but what is clear

  13. Biological optimization systems for enhancing photosynthetic efficiency and methods of use

    DOE Patents [OSTI]

    Hunt, Ryan W.; Chinnasamy, Senthil; Das, Keshav C.; de Mattos, Erico Rolim

    2012-11-06

    Biological optimization systems for enhancing photosynthetic efficiency and methods of use. Specifically, methods for enhancing photosynthetic efficiency including applying pulsed light to a photosynthetic organism, using a chlorophyll fluorescence feedback control system to determine one or more photosynthetic efficiency parameters, and adjusting one or more of the photosynthetic efficiency parameters to drive the photosynthesis by the delivery of an amount of light to optimize light absorption of the photosynthetic organism while providing enough dark time between light pulses to prevent oversaturation of the chlorophyll reaction centers are disclosed.

  14. EIA - Natural Gas Pipeline System - Links to U.S. Natural Gas Pipeline

    Gasoline and Diesel Fuel Update (EIA)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of Natural GasAdjustments (Billion Cubic Feet) Wyoming963 1.969Central Region About U.S. Natural Gas Pipelines -

  15. Grid-Interactive Electric Vehicle DC-Link Photovoltaic Charging System -

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would likeUniverse (Journalvivo Low-Dose Lowď‚— We wantInvestigations Committee

  16. Experimental proposal for testing the Emergence of Environment Induced (EIN) Classical Selection rules with Biological Systems

    E-Print Network [OSTI]

    Thomas Durt

    2010-03-14

    According to the so-called Quantum Darwinist approach, the emergence of "classical islands" from a quantum background is assumed to obey a (selection) principle of maximal information. We illustrate this idea by considering the coupling of two oscillators (modes). As our approach suggests that the classical limit could have emerged throughout a long and progressive Evolution mechanism, it is likely that primitive living organisms behave in a "more quantum", "less classical" way than more evolved ones. This brings us to seriously consider the possibility to measure departures from classicality exhibited by biological systems. We describe an experimental proposal the aimed at revealing the presence of entanglement in the biophotonic radiation emitted by biological sources.

  17. Global Trees: A Framework for Linked Data Structures on Distributed Memory Parallel Systems

    SciTech Connect (OSTI)

    Larkins, D. B.; Dinan, James S.; Krishnamoorthy, Sriram; Parthasarathy, Srinivasan; Rountev, Atanas; Sadayappan, Ponnuswamy

    2008-11-17

    This paper describes the Global Trees (GT) system that provides a multi-layered interface to a global address space view of distributed tree data structures, while providing scalable performance on distributed memory systems. The Global Trees system utilizes coarse-grained data movement to enhance locality and communication efficiency. We describe the design and implementation of GT, illustrate its use in the context of a gravitational simulation application, and provide experimental results that demonstrate the effectiveness of the approach. The key benefits of using this system include efficient sharedmemory style programming of distributed trees, tree-specific optimizations for data access and computation, and the ability to customize many aspects of GT to optimize application performance.

  18. Synthetic Biology and the U.S. Biotechnology Regulatory System: Challenges and Options

    SciTech Connect (OSTI)

    Carter, Sarah R.; Rodemeyer, Michael; Garfinkel, Michele S.; Friedman, Robert M

    2014-05-01

    Synthetic Biology and the U.S. Biotechnology Regulatory System: Challenges and Options Sarah R. Carter, Ph.D., J. Craig Venter Institute; Michael Rodemeyer, J.D., University of Virginia; Michele S. Garfinkel, Ph.D., EMBO; Robert M. Friedman, Ph.D., J. Craig Venter Institute In recent years, a range of genetic engineering techniques referred to as “synthetic biology” has significantly expanded the tool kit available to scientists and engineers, providing them with far greater capabilities to engineer organisms than previous techniques allowed. The field of synthetic biology includes the relatively new ability to synthesize long pieces of DNA from chemicals, as well as improved methods for genetic manipulation and design of genetic pathways to achieve more precise control of biological systems. These advances will help usher in a new generation of genetically engineered microbes, plants, and animals. The JCVI Policy Center team, along with researchers at the University of Virginia and EMBO, examined how well the current U.S. regulatory system for genetically engineered products will handle the near-term introduction of organisms engineered using synthetic biology. In particular, the focus was on those organisms intended to be used or grown directly in the environment, outside of a contained facility. The study concludes that the U.S. regulatory agencies have adequate legal authority to address most, but not all, potential environmental, health and safety concerns posed by these organisms. Such near-term products are likely to represent incremental changes rather than a marked departure from previous genetically engineered organisms. However, the study also identified two key challenges for the regulatory system, which are detailed in the report. First, USDA’s authority over genetically engineered plants depends on the use of an older engineering technique that is no longer necessary for many applications. The shift to synthetic biology and other newer genetic engineering techniques will leave many engineered plants without any pre-market regulatory review. Second, the number and diversity of engineered microbes for commercial use will increase in the near future, challenging EPA’s resources, expertise, and perhaps authority to regulate them. For each of these challenges, the report sets out a series of options, including an analysis of the advantages and disadvantages of each option from a variety of perspectives, for policy makers to consider. Policy responses will depend on the trade-offs chosen among competing considerations. This report, funded by the Department of Energy with additional funds from the Alfred P. Sloan Foundation, is the result of a two-year process that included interviews, commissioned background papers, discussions, and two workshops that sought input from a wide range of experts, including U.S. federal agency regulators, legal and science policy experts, representatives from the biotechnology indus¬try, and non-governmental organiza¬tions. This cross-section of views informed this report, but the conclusions are solely those of the authors. An Executive Summary, full Report, and background papers are available at: http://www.jcvi.org/cms/research/projects/synthetic-biology-and-the-us-biotechnology-regulatory-system/overview/

  19. Indoor Air Nuclear, Biological, and Chemical Health Modeling and Assessment System

    SciTech Connect (OSTI)

    Stenner, Robert D.; Hadley, Donald L.; Armstrong, Peter R.; Buck, John W.; Hoopes, Bonnie L.; Janus, Michael C.

    2001-03-01

    Indoor air quality effects on human health are of increasing concern to public health agencies and building owners. The prevention and treatment of 'sick building' syndrome and the spread of air-borne diseases in hospitals, for example, are well known priorities. However, increasing attention is being directed to the vulnerability of our public buildings/places, public security and national defense facilities to terrorist attack or the accidental release of air-borne biological pathogens, harmful chemicals, or radioactive contaminants. The Indoor Air Nuclear, Biological, and Chemical Health Modeling and Assessment System (IA-NBC-HMAS) was developed to serve as a health impact analysis tool for use in addressing these concerns. The overall goal was to develop a user-friendly fully functional prototype Health Modeling and Assessment system, which will operate under the PNNL FRAMES system for ease of use and to maximize its integration with other modeling and assessment capabilities accessible within the FRAMES system (e.g., ambient air fate and transport models, water borne fate and transport models, Physiologically Based Pharmacokinetic models, etc.). The prototype IA-NBC-HMAS is designed to serve as a functional Health Modeling and Assessment system that can be easily tailored to meet specific building analysis needs of a customer. The prototype system was developed and tested using an actual building (i.e., the Churchville Building located at the Aberdeen Proving Ground) and release scenario (i.e., the release and measurement of tracer materials within the building) to ensure realism and practicality in the design and development of the prototype system. A user-friendly "demo" accompanies this report to allow the reader the opportunity for a "hands on" review of the prototype system's capability.

  20. "Development of an Integrated EMSL MS and NMR Metabolic Flux Analysis Capability In Support of Systems Biology

    E-Print Network [OSTI]

    fluxes using stable isotope labeling and either nuclear magnetic resonance (NMR) or mass spectrometry (MS research in systems biology and metabolic engineering. It will allow us to provide a complete package

  1. Systems biology analysis of Escherichia coli for discovery and metabolic engineering

    E-Print Network [OSTI]

    Orth, Jeffrey David

    2012-01-01

    the unification of biology. The Gene Ontology Consortium.cellular and molecular biology. 2nd ed. 1996, ASM Press:Journal of Theoretical Biology, 1993. 165(4): p. 503- Feist,

  2. Systems Biology Approaches Investigating Cardiac Epigenome Dynamics in Heart Hypertrophy and Failure

    E-Print Network [OSTI]

    Chen, Haodong

    2013-01-01

    reviews. Molecular cell biology 11, 264–75 (2010). Cairns,structural & molecular biology 18, 107–14 Li, G. et al.data. PLoS computational biology 5, e1000598 (2009).

  3. Minor in Marine Biology Minor in Marine Biology

    E-Print Network [OSTI]

    Chen, Tsuhan

    Minor in Marine Biology Minor in Marine Biology General Goals of the Minor in Marine Biology About who choose the Minor in Marine Biology will learn about the biology, evolution and ecology of organisms that inhabit these environments and the ecological processes linking them. Marine biology draws

  4. A NEW ACCRETION DISK AROUND THE MISSING LINK BINARY SYSTEM PSR J1023+0038

    SciTech Connect (OSTI)

    Patruno, A.; Archibald, A. M.; Hessels, J. W. T.; Bassa, C. G.; Janssen, G. H.; Bogdanov, S.; Stappers, B. W.; Lyne, A. G.; Kaspi, V. M.; Tendulkar, S.

    2014-01-20

    PSR J1023+0038 is an exceptional system for understanding how slowly rotating neutron stars are spun up to millisecond rotational periods through accretion from a companion star. Observed as a radio pulsar from 2007-2013, optical data showed that the system had an accretion disk in 2000/2001. Starting at the end of 2013 June, the radio pulsar has become undetectable, suggesting a return to the previous accretion-disk state, where the system more closely resembles an X-ray binary. In this Letter we report the first targeted X-ray observations ever performed of the active phase and complement them with UV/optical and radio observations collected in 2013 October. We find strong evidence that indeed an accretion disk has recently formed in the system and we report the detection of fast X-ray changes spanning about two orders of magnitude in luminosity. No radio pulsations are seen during low flux states in the X-ray light curve or at any other times.

  5. ECEN 720 High-Speed Links: Circuits and Systems Lab1 -Transmission Lines

    E-Print Network [OSTI]

    Palermo, Sam

    transmission line terminations are required to eliminate any reflections. In this lab, the characteristics and usage of basic transmission line model and its termination will be practiced. A time System using Partial Differential Equation The transmission line can be described as series resistance

  6. A simple production-consumption system This note is for SB200, "A systems approach to biology". It provides more details of the analysis

    E-Print Network [OSTI]

    Gunawardena, Jeremy

    A simple production-consumption system This note is for SB200, "A systems approach to biology". It provides more details of the analysis of the production-consumption system that was done in the first to one of the TAs. I explained in class how the production-consumption system leads to the differential

  7. Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail. (Conference)Feedback System inStatusandArticle)SystemSystem(Journal Article) |

  8. Towards Composing Data Aware Systems Biology Workflows on Cloud Platforms: A MeDICi-based Approach

    SciTech Connect (OSTI)

    Gorton, Ian; Liu, Yan; Yin, Jian; Kulkarni, Anand V.; Wynne, Adam S.

    2011-09-08

    Cloud computing is being increasingly adopted for deploying systems biology scientific workflows. Scientists developing these workflows use a wide variety of fragmented and competing data sets and computational tools of all scales to support their research. To this end, the synergy of client side workflow tools with cloud platforms is a promising approach to share and reuse data and workflows. In such systems, the location of data and computation is essential consideration in terms of quality of service for composing a scientific workflow across remote cloud platforms. In this paper, we describe a cloud-based workflow for genome annotation processing that is underpinned by MeDICi - a middleware designed for data intensive scientific applications. The workflow implementation incorporates an execution layer for exploiting data locality that routes the workflow requests to the processing steps that are colocated with the data. We demonstrate our approach by composing two workflowswith the MeDICi pipelines.

  9. Final Report - Phylogenomic tools and web resources for the Systems Biology Knowledgebase

    SciTech Connect (OSTI)

    Sjolander, Kimmen

    2014-11-07

    The major advance during this last reporting period (8/15/12 to present) is our release of data on the PhyloFacts website: phylogenetic trees, multiple sequence alignments and other data for protein families are now available for download from http://phylogenomics.berkeley.edu/data/. This project as a whole aimed to develop high-throughput functional annotation systems that exploit information from protein 3D structure and evolution to provide highly precise inferences of various aspects of gene function, including molecular function, biological process, pathway association, Pfam domains, cellular localization and so on. We accomplished these aims by developing and testing different systems on a database of protein family trees: the PhyloFacts Phylogenomic Encyclopedia (at http://phylogenomics.berkeley.edu/phylofacts/ ).

  10. How sulphate-reducing microorganisms cope with stress: Lessons from systems biology

    SciTech Connect (OSTI)

    Zhou, J.; He, Q.; Hemme, C.L.; Mukhopadhyay, A.; Hillesland, K.; Zhou, A.; He, Z.; Nostrand, J.D. Van; Hazen, T.C.; Stahl, D.A.; Wall, J.D.; Arkin, A.P.

    2011-04-01

    Sulphate-reducing microorganisms (SRMs) are a phylogenetically diverse group of anaerobes encompassing distinct physiologies with a broad ecological distribution. As SRMs have important roles in the biogeochemical cycling of carbon, nitrogen, sulphur and various metals, an understanding of how these organisms respond to environmental stresses is of fundamental and practical importance. In this Review, we highlight recent applications of systems biology tools in studying the stress responses of SRMs, particularly Desulfovibrio spp., at the cell, population, community and ecosystem levels. The syntrophic lifestyle of SRMs is also discussed, with a focus on system-level analyses of adaptive mechanisms. Such information is important for understanding the microbiology of the global sulphur cycle and for developing biotechnological applications of SRMs for environmental remediation, energy production, biocorrosion control, wastewater treatment and mineral recovery.

  11. Magnetophoretic bead trapping in a high-flowrate biological detection system.

    SciTech Connect (OSTI)

    Galambos, Paul C.; Hopkins, Matthew Morgan; Rahimian, Kamayar; Martin, James Ellis; Anderson, G. Ronald; Clem, Paul Gilbert; Rohwer, Lauren Elizabeth Shea; Lemp, Thomas; Derzon, Mark Steven; James, Conrad D.

    2005-03-01

    This report contains the summary of the 'Magnetophoretic Bead Trapping in a High-Flowrate Biological Detection System' LDRD project 74795. The objective of this project is to develop a novel biodetection system for high-throughput sample analysis. The chief application of this system is in detection of very low concentrations of target molecules from a complex liquid solution containing many different constituents--some of which may interfere with identification of the target molecule. The system is also designed to handle air sampling by using an aerosol system (for instance a WESP - Wet Electro-Static Precipitator, or an impact spray system) to get air sample constituents into the liquid volume. The system described herein automatically takes the raw liquid sample, whether air converted or initially liquid matrix, and mixes in magnetic detector beads that capture the targets of interest and then performs the sample cleanup function, allowing increased sensitivity and eliminating most false positives and false negatives at a downstream detector. The surfaces of the beads can be functionalized in a variety of ways in order to maximize the number of targets to be captured and concentrated. Bacteria and viruses are captured using antibodies to surface proteins on bacterial cell walls or viral particle coats. In combination with a cell lysis or PCR (Polymerase Chain Reaction), the beads can be used as a DNA or RNA probe to capture nucleic acid patterns of interest. The sample cleanup capability of this system would allow different raw biological samples, such as blood or saliva to be analyzed for the presence of different infectious agents (e.g. smallpox or SARS). For future studies, we envision functionalizing bead surfaces to bind to chemical weapons agents, radio-isotopes, and explosives. The two main objectives of this project were to explore methods for enhancing the mixing of the capture microspheres in the sample, and to develop a novel high-throughput magnetic microsphere trap. We have developed a novel technique using the magnetic capture microspheres as 'stirrer bars' in a fluid sample to enhance target binding to the microsphere surfaces. We have also made progress in developing a polymer-MEMS electromagnet for trapping magnetic spheres in a high-flowrate fluid format.

  12. Linear domain interactome and biological function of anterior gradient 2 

    E-Print Network [OSTI]

    Lawrence, Melanie Laura Alexandra

    2013-11-29

    The Anterior Gradient 2 (AGR2) protein has been implicated in a variety of biological systems linked to cancer and metastasis, tamoxifen-induced drug resistance, pro-inflammatory diseases like IBD and asthma, and limb ...

  13. Ultrashort pulse high repetition rate laser system for biological tissue processing

    DOE Patents [OSTI]

    Neev, Joseph (Laguna Beach, CA); Da Silva, Luiz B. (Danville, CA); Matthews, Dennis L. (Moss Beach, CA); Glinsky, Michael E. (Livermore, CA); Stuart, Brent C. (Fremont, CA); Perry, Michael D. (Livermore, CA); Feit, Michael D. (Livermore, CA); Rubenchik, Alexander M. (Livermore, CA)

    1998-01-01

    A method and apparatus is disclosed for fast, efficient, precise and damage-free biological tissue removal using an ultrashort pulse duration laser system operating at high pulse repetition rates. The duration of each laser pulse is on the order of about 1 fs to less than 50 ps such that energy deposition is localized in a small depth and occurs before significant hydrodynamic motion and thermal conduction, leading to collateral damage, can take place. The depth of material removed per pulse is on the order of about 1 micrometer, and the minimal thermal and mechanical effects associated with this ablation method allows for high repetition rate operation, in the region 10 to over 1000 Hertz, which, in turn, achieves high material removal rates. The input laser energy per ablated volume of tissue is small, and the energy density required to ablate material decreases with decreasing pulse width. The ablation threshold and ablation rate are only weakly dependent on tissue type and condition, allowing for maximum flexibility of use in various biological tissue removal applications. The use of a chirped-pulse amplified Titanium-doped sapphire laser is disclosed as the source in one embodiment.

  14. Ultrashort pulse high repetition rate laser system for biological tissue processing

    DOE Patents [OSTI]

    Neev, J.; Da Silva, L.B.; Matthews, D.L.; Glinsky, M.E.; Stuart, B.C.; Perry, M.D.; Feit, M.D.; Rubenchik, A.M.

    1998-02-24

    A method and apparatus are disclosed for fast, efficient, precise and damage-free biological tissue removal using an ultrashort pulse duration laser system operating at high pulse repetition rates. The duration of each laser pulse is on the order of about 1 fs to less than 50 ps such that energy deposition is localized in a small depth and occurs before significant hydrodynamic motion and thermal conduction, leading to collateral damage, can take place. The depth of material removed per pulse is on the order of about 1 micrometer, and the minimal thermal and mechanical effects associated with this ablation method allows for high repetition rate operation, in the region 10 to over 1000 Hertz, which, in turn, achieves high material removal rates. The input laser energy per ablated volume of tissue is small, and the energy density required to ablate material decreases with decreasing pulse width. The ablation threshold and ablation rate are only weakly dependent on tissue type and condition, allowing for maximum flexibility of use in various biological tissue removal applications. The use of a chirped-pulse amplified Titanium-doped sapphire laser is disclosed as the source in one embodiment. 8 figs.

  15. Designing Biological Systems for Sustainability and Programmed Environmental Interface (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Silver, Pam [Harvard University

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Pam Silver of Harvard University gives a presentation on "Designing Biological Systems for Sustainability and Programmed Environmental Interface" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  16. Designing Biological Systems for Sustainability and Programmed Environmental Interface (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Silver, Pam [Harvard University] [Harvard University

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Pam Silver of Harvard University gives a presentation on "Designing Biological Systems for Sustainability and Programmed Environmental Interface" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  17. Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses

    SciTech Connect (OSTI)

    Yang, Shihui; Pan, Chongle; Tschaplinski, Timothy J; Hurst, Gregory {Greg} B; Engle, Nancy L; Zhou, Wen; Dam, Phuongan; Xu, Ying; Dice, Lezlee T; Davison, Brian H; Brown, Steven D

    2013-01-01

    Zymomonas mobilis ZM4 is a capable ethanogenic bacterium with high ethanol productivity and high level of ethanol tolerance. Previous studies indicated that several stress-related proteins and changes in the ZM4 membrane lipid composition may contribute to ethanol tolerance. However, the molecular mechanisms of ethanol stress response have not been elucidated fully. In this study, ethanol stress responses were investigated using systems biology tools. Medium supplementation with an initial 47.3 g/L (6% v/v) ethanol reduced Z. mobilis ZM4 glucose consumption, growth rate and ethanol productivity compared to that of untreated controls. Metabolomic profiling showed that ethanol-treated ZM4 cells accumulated greater amounts of glycerol during the entire fermentation process, which may indicate an important role for this metabolite. A proteomic analysis of early exponential growth identified about one thousand proteins, or approximately 56% of the predicted ZM4 proteome. Proteins related to metabolism and stress response such as chaperones and key regulators were more abundant in the early ethanol stress condition. Transcriptomic studies indicated the response of ZM4 to ethanol is dynamic, complex and involves many genes from all the different functional categories. There were fewer genes significantly differentially expressed in the exponential phase compared to that of stationary phase and early stationary phase. Most down-regulated genes were related to translation and ribosome biogenesis, while the ethanol-upregulated genes were mostly related to cellular processes and metabolism. Correlations among the transcriptomics, proteomics and metabolism were examined and among significantly expressed genes or proteins, we observe higher correlation coefficients when fold-change values are higher. This systems biology study elucidates key Z. mobilis ZM4 metabolites, genes and proteins that form the foundation of its distinctive physiology and its multifaceted response to ethanol stress.

  18. Quantum Biology

    E-Print Network [OSTI]

    Alessandro Sergi

    2009-07-11

    A critical assessment of the recent developments of molecular biology is presented. The thesis that they do not lead to a conceptual understanding of life and biological systems is defended. Maturana and Varela's concept of autopoiesis is briefly sketched and its logical circularity avoided by postulating the existence of underlying {\\it living processes}, entailing amplification from the microscopic to the macroscopic scale, with increasing complexity in the passage from one scale to the other. Following such a line of thought, the currently accepted model of condensed matter, which is based on electrostatics and short-ranged forces, is criticized. It is suggested that the correct interpretation of quantum dispersion forces (van der Waals, hydrogen bonding, and so on) as quantum coherence effects hints at the necessity of including long-ranged forces (or mechanisms for them) in condensed matter theories of biological processes. Some quantum effects in biology are reviewed and quantum mechanics is acknowledged as conceptually important to biology since without it most (if not all) of the biological structures and signalling processes would not even exist. Moreover, it is suggested that long-range quantum coherent dynamics, including electron polarization, may be invoked to explain signal amplification process in biological systems in general.

  19. On linking an Earth system model to the equilibrium carbon representation of an economically optimizing land use model

    SciTech Connect (OSTI)

    Bond-Lamberty, Benjamin; Calvin, Katherine V.; Jones, Andrew D.; Mao, Jiafu; Patel, Pralit L.; Shi, Xiaoying; Thomson, Allison M.; Thornton, Peter E.; Zhou, Yuyu

    2014-01-01

    Human activities are significantly altering biogeochemical cycles at the global scale, posing a significant problem for earth system models (ESMs), which may incorporate static land-use change inputs but do not actively simulate policy or economic forces. One option to address this problem is a to couple an ESM with an economically oriented integrated assessment model. Here we have implemented and tested a coupling mechanism between the carbon cycles of an ESM (CLM) and an integrated assessment (GCAM) model, examining the best proxy variables to share between the models, and quantifying our ability to distinguish climate- and land-use-driven flux changes. CLM’s net primary production and heterotrophic respiration outputs were found to be the most robust proxy variables by which to manipulate GCAM’s assumptions of long-term ecosystem steady state carbon, with short-term forest production strongly correlated with long-term biomass changes in climate-change model runs. By leveraging the fact that carbon-cycle effects of anthropogenic land-use change are short-term and spatially limited relative to widely distributed climate effects, we were able to distinguish these effects successfully in the model coupling, passing only the latter to GCAM. By allowing climate effects from a full earth system model to dynamically modulate the economic and policy decisions of an integrated assessment model, this work provides a foundation for linking these models in a robust and flexible framework capable of examining two-way interactions between human and earth system processes.

  20. Efficiency, Robustness and Stochasticity of Gene Regulatory Networks in Systems Biology: lambda Switch as a Working Example

    E-Print Network [OSTI]

    X. Zhu; L. Yin; L. Hood; D. Galas; P. Ao

    2006-02-09

    Phage lambda is one of the most studied biological models in modern molecular biology. Over the past 50 years quantitative experimental knowledge on this biological model has been accumulated at all levels: physics, chemistry, genomics, proteomics, functions, and more. All its components have been known to a great detail. The theoretical task has been to integrate its components to make the organism working quantitatively in a harmonic manner. This would test our biological understanding and would lay a solid fundamental for further explorations and applications, an obvious goal of systems biology. One of the outstanding challenges in doing so has been the so-called stability puzzle of lambda switch: the biologically observed robustness and its difficult mathematical reconstruction based on known experimental values. In this chapter we review the recent theoretical and experimental efforts on tackling this problem. An emphasis is put on the minimum quantitative modeling where a successful numerical agreement between experiments and modeling has been achieved. A novel method tentatively named stochastic dynamical structure analysis emerged from such study is also discussed within a broad modeling perspective.

  1. A Comprehensive Collection of Systems Biology Data Characterizing the Host Response to Viral Infection

    SciTech Connect (OSTI)

    Aevermann, Brian; Pickett, Brett E.; Kumar, Sanjeev; Klem, Edward B.; Agnihothram, Sudhakar; Askovich, Peter S.; Bankhead, Armand; Bolles, Meagan; Carter, Victoria; Chang, Jean H.; Clauss, Therese RW; Dash, Pradyot; Diercks, Alan H.; Eisfeld, Amie J.; Ellis, Amy L.; Fan, Shufang; Ferris, Martin T.; Gralinski, Lisa; Green, Richard; Gritsenko, Marina A.; Hatta, Masato; Heegel, Robert A.; Jacobs, Jon M.; Jeng, Sophia; Josset, Laurence; Kaiser, Shari M.; Kelly, Sarah; Law, Gale L.; Li, Chengjun; Li, Jiangning; Long, Casey; Luna, Maria L.; Matzke, Melissa M.; McDermott, Jason E.; Menachery, Vineet; Metz, Thomas O.; Mitchell, Hugh D.; Monroe, Matthew E.; Navarro, Garnet; Neumann, Gabriele; Podyminogin, Rebecca L.; Purvine, Samuel O.; Rosenberger, Carrie; Sanders, Catherine J.; Schepmoes, Athena A.; Shukla, Anil K.; Sims, Amy; Sova, Pavel; Tam, Vincent C.; Tchitchek, Nicholas; Thomas, Paul G.; Tilton, Susan C.; Totura, Allison L.; Wang, Jing; Webb-Robertson, Bobbie-Jo M.; Wen, Ji; Weiss, Jeffrey M.; Yang, Feng; Yount, Boyd; Zhang, Qibin; Mcweeney, Shannon K.; Smith, Richard D.; Waters, Katrina M.; Kawaoka, Yoshihiro; Baric, Ralph; Aderem, Alan; Katze, Michael G.; Scheuermann, Richard H.

    2014-10-14

    The Systems Biology for Infectious Diseases Research program was established by the U.S. National Institute of Allergy and Infectious Diseases to investigate host-pathogen interactions at a systems level. This program generated 47 transcriptomic and proteomic datasets from 30 studies that investigate in vivo and in vitro host responses to viral infections. Human pathogens in the Orthomyxoviridae and Coronaviridae families, especially pandemic H1N1 and avian H5N1 influenza A viruses and severe acute respiratory syndrome coronavirus (SARS-CoV), were investigated. Study validation was demonstrated via experimental quality control measures and meta-analysis of independent experiments performed under similar conditions. Primary assay results are archived at the GEO and PeptideAtlas public repositories, while processed statistical results together with standardized metadata are publically available at the Influenza Research Database (www.fludb.org) and the Virus Pathogen Resource (www.viprbrc.org). By comparing data from mutant versus wild-type virus and host strains, RNA versus protein differential expression, and infection with genetically similar strains, these data can be used to further investigate genetic and physiological determinants of host responses to viral infection.

  2. A comprehensive collection of systems biology data characterizing the host response to viral infection

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Aevermann, Brian D.; Pickett, Brett E.; Kumar, Sanjeev; Klem, Edward B.; Agnihothram, Sudhakar; Askovich, Peter S.; Bankhead, Armand; Bolles, Meagan; Carter, Victoria; Chang, Jean H.; et al

    2014-10-14

    The Systems Biology for Infectious Diseases Research program was established by the U.S. National Institute of Allergy and Infectious Diseases to investigate host-pathogen interactions at a systems level. This program generated 47 transcriptomic and proteomic datasets from 30 studies that investigate in vivo and in vitro host responses to viral infections. Human pathogens in the Orthomyxoviridae and Coronaviridae families, especially pandemic H1N1 and avian H5N1 influenza A viruses and severe acute respiratory syndrome coronavirus (SARS-CoV), were investigated. Study validation was demonstrated via experimental quality control measures and meta-analysis of independent experiments performed under similar conditions. Primary assay results are archivedmore »at the GEO and PeptideAtlas public repositories, while processed statistical results together with standardized metadata are publically available at the Influenza Research Database (www.fludb.org) and the Virus Pathogen Resource (www.viprbrc.org). As a result, by comparing data from mutant versus wild-type virus and host strains, RNA versus protein differential expression, and infection with genetically similar strains, these data can be used to further investigate genetic and physiological determinants of host responses to viral infection.« less

  3. A comprehensive collection of systems biology data characterizing the host response to viral infection

    SciTech Connect (OSTI)

    Aevermann, Brian D.; Pickett, Brett E.; Kumar, Sanjeev; Klem, Edward B.; Agnihothram, Sudhakar; Askovich, Peter S.; Bankhead, Armand; Bolles, Meagan; Carter, Victoria; Chang, Jean H.; Clauss, Therese R. W.; Dash, Pradyot; Diercks, Alan H.; Eisfeld, Amie J.; Ellis, Amy L.; Fan, Shufang; Ferris, Martin T.; Gralinski, Lisa; Green, Richard; Gritsenko, Marina A.; Hatta, Masato; Heegel, Robert A.; Jacobs, Jon M.; Jeng, Sophia; Josset, Laurence; Kaiser, Shari M.; Kelly, Sarah; Law, Gale Lynn; Li, Chengjun; Li, Jiangning; Long, Casey; Luna, Maria L.; Matzke, Melissa M.; McDermott, Jason E.; Menachery, Vineet; Metz, Thomas O.; Mitchell, Hugh D.; Monroe, Matthew E.; Navarro, Garnet; Neumann, Gabriele; Podyminogin, Rebecca L.; Purvine, Samuel O.; Rosenberger, Carrie; Sanders, Catherine J.; Schepmoes, Athena A.; Shukla, Anil K.; Sims, Amy; Sova, Pavel; Tam, Vincent C.; Tchitchek, Nicholas; Thomas, Paul G.; Tilton, Susan C.; Totura, Allison L.; Wang, Jing; Webb-Robertson, Bobbie-Jo M.; Wen, Ji; Weiss, Jeffrey M.; Yang, Feng; Yount, Boyd; Zhang, Qibin; Mcweeney, Shannon K.; Smith, Richard D.; Waters, Katrina M.; Kawaoka, Yoshihiro; Baric, Ralph; Aderem, Alan; Katze, Michael G.; Scheuermann, Richard H.

    2014-10-14

    The Systems Biology for Infectious Diseases Research program was established by the U.S. National Institute of Allergy and Infectious Diseases to investigate host-pathogen interactions at a systems level. This program generated 47 transcriptomic and proteomic datasets from 30 studies that investigate in vivo and in vitro host responses to viral infections. Human pathogens in the Orthomyxoviridae and Coronaviridae families, especially pandemic H1N1 and avian H5N1 influenza A viruses and severe acute respiratory syndrome coronavirus (SARS-CoV), were investigated. Study validation was demonstrated via experimental quality control measures and meta-analysis of independent experiments performed under similar conditions. Primary assay results are archived at the GEO and PeptideAtlas public repositories, while processed statistical results together with standardized metadata are publically available at the Influenza Research Database (www.fludb.org) and the Virus Pathogen Resource (www.viprbrc.org). As a result, by comparing data from mutant versus wild-type virus and host strains, RNA versus protein differential expression, and infection with genetically similar strains, these data can be used to further investigate genetic and physiological determinants of host responses to viral infection.

  4. Extracting information from biological networks

    E-Print Network [OSTI]

    Chindelevitch, Leonid Alexandrovich

    2010-01-01

    Systems biology, the study of biological systems in a holistic manner, has been catalyzed by a dramatic improvement in experimental techniques, coupled with a constantly increasing availability of biological data. The ...

  5. Model-driven metabolic engineering of Escherichia coli : a systems biology approach

    E-Print Network [OSTI]

    Feist, Adam Michael

    2008-01-01

    discovery 36 and for understanding of complex biological processes. Predictive modelsModel-aided gap-filling and discovery will aid in this process (

  6. Integrated Omics in Systems Biology: The New Frontier for Environmental Biotechnology

    E-Print Network [OSTI]

    Hazen, Terry C.

    2008-01-01

    biology Comparative Genomics Metabolomics DNA Microarraysand Environmental Research, Genomics Program:GTL throughINSTITUTE FOR ENVIRONMENTAL GENOMICS UNIVERSITY OF OKLAHOMA

  7. Contributions to the Theory of Thermostated Systems II: Least Dissipation of Helmholtz Free Energy in Nano-Biology

    E-Print Network [OSTI]

    Ronald F. Fox

    2015-03-12

    In this paper, we develop further the theory of thermostated systems along the lines of our earlier paper. Two results are highlighted: 1) in the Markov limit of the contracted description, a least dissipation of Helmholtz free energy principle is established; and 2) a detailed account of the appropriateness of this principle for nano-biology, including the evolution of life, is presented.

  8. Marine Biology

    E-Print Network [OSTI]

    Zaffino, Kyle

    2013-01-01

    this  door. ”   Marine  Biology   I  joined  the  military  RIVERSIDE   Marine  Biology   A Thesis submitted in partialBiology                                                                                                                        

  9. Geo-Information Systems for the Middle EastGeoArabia, Vol. 5, No. 2, 2000 Gulf PetroLink, Bahrain

    E-Print Network [OSTI]

    295 Geo-Information Systems for the Middle EastGeoArabia, Vol. 5, No. 2, 2000 Gulf PetroLink, Bahrain Design and Development of Information Systems for the Geosciences: An Application to the Middle are developing a comprehensive Solid Earth Information System (SEIS). The complex nature of the solid earth

  10. System and method for preconcentrating, identifying, and quantifying chemical and biological substances

    DOE Patents [OSTI]

    Yu, Conrad M. (Antioch, CA); Koo, Jackson C. (San Ramon, CA)

    2000-01-01

    A system and method for preconcentrating, identifying, and quantifying chemical and biological substances is disclosed. An input valve directs a first volume of a sample gas to a surface acoustic wave (SAW) device. The SAW device preconcentrates and detects a mass of a substance within the sample gas. An output valve receives a second volume of the sample gas containing the preconcentrated substance from the SAW device and directs the second volume to a gas chromatograph (GC). The GC identifies the preconcentrated substance within the sample gas. A shunt valve exhausts a volume of the sample gas equal to the first volume minus the second volume away from the SAW device and the GC. The method of the present invention includes the steps of opening an input valve for passing a first volume of a sample gas to a SAW device; preconcentrating and detecting a mass of a substance within the sample gas using the SAW device; opening an output valve for passing a second volume of the sample gas containing the preconcentrated substance to a gas chromatograph (GC); and then identifying the preconcentrated substance within the sample gas using the GC.

  11. Department of Energy's Biological and Environmental Research Strategic Data Roadmap for Earth System Science

    SciTech Connect (OSTI)

    Williams, Dean N.; Palanisamy, Giri; Shipman, Galen; Boden, Thomas A.; Voyles, Jimmy W.

    2014-04-25

    Rapid advances in experimental, sensor, and computational technologies and techniques are driving exponential growth in the volume, acquisition rate, variety, and complexity of scientific data. This wealth of scientifically meaningful data has tremendous potential to lead to scientific discovery. However, to achieve scientific breakthroughs, these data must be exploitable—they must be analyzed effectively and efficiently and the results shared and communicated easily within the wider Department of Energy’s (DOE’s) Biological and Environmental Research (BER) Climate and Environmental Sciences Division (CESD) community. The explosion in data complexity and scale makes these tasks exceedingly difficult to achieve, particularly given that an increasing number of disciplines are working across techniques, integrating simulation and experimental or observational results (see Table 5 in Appendix 2). Consequently, we need new approaches to data management, analysis, and visualization that provide research teams with easy-to-use and scalable end-to-end solutions. These solutions must facilitate (and where feasible, automate and capture) every stage in the data lifecycle (shown in Figure 1), from collection to management, annotation, sharing, discovery, analysis, and visualization. In addition, the core functionalities are the same across climate science communities, but they require customization to adapt to specific needs and fit into research and analysis workflows. To this end, the mission of CESD’s Data and Informatics Program is to integrate all existing and future distributed CESD data holdings into a seamless and unified environment for the acceleration of Earth system science.

  12. Controlling Across Complex Networks Emerging links between networks and control

    E-Print Network [OSTI]

    & Computer Engineering Department MSC01 1100 1 University of New Mexico Albuquerque, NM 87131-0001 USA as biology, computer science, physics, and social science. Networks thus provide the means to understand, by considering the impact of link capacity, latency, and packet loss on control systems [2, 1

  13. Cool Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAuditsClusterInformationContract Management Princeton16,558.1Cool Links Cool

  14. Related Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail.Theory ofDid youOxygen Generation |Publications TheGashome / Related Links Institute

  15. Relevant Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail.Theory ofDid youOxygen Generation |Publications TheGashome / Related Links

  16. Links - SRSCRO

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail.Theory ofDid you notHeat PumpsTechnologies |LibraryCenterCenterLinks Berkeleylinks

  17. MIDC: Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would likeUniverseIMPACTThousandReport) | SciTech ConnectFuture3,LastMICKEY Small IceLinks

  18. New wholesale power market design using linked forward markets : a study for the DOE energy storage systems program.

    SciTech Connect (OSTI)

    Silva Monroy, Cesar Augusto; Loose, Verne William; Ellison, James F.; Elliott, Ryan Thomas; Byrne, Raymond Harry; Guttromson, Ross; Tesfatsion, Leigh S.

    2013-04-01

    This report proposes a reformulation of U.S. ISO/RTO-managed wholesale electric power mar- kets for improved reliability and e ciency of system operations. Current markets do not specify or compensate primary frequency response. They also unnecessarily limit the participation of new technologies in reserve markets and o er insu cient economic inducements for new capacity invest- ment. In the proposed market reformulation, energy products are represented as physically-covered rm contracts and reserve products as physically-covered call option contracts. Trading of these products is supported by a backbone of linked ISO/RTO-managed forward markets with planning horizons ranging from multiple years to minutes ahead. A principal advantage of this reformulation is that reserve needs can be speci ed in detail, and resources can o er the services for which they are best suited, without being forced to conform to rigid reserve product de nitions. This should improve the business case for electric energy storage and other emerging technologies to provide reserve. In addition, the facilitation of price discovery should help to ensure e cient energy/reserve procurement and adequate levels of new capacity investment.

  19. In vivo robotics: the automation of neuroscience and other intact-system biological fields

    E-Print Network [OSTI]

    Forest, Craig R.

    Robotic and automation technologies have played a huge role in in vitro biological science, having proved critical for scientific endeavors such as genome sequencing and high-throughput screening. Robotic and automation ...

  20. Physical, Chemical & Biological Processes of the Environment A Systems Approach to Solving Environmental Problems

    E-Print Network [OSTI]

    drilling for oil in the Great Lakes or Is fracking an environmental risk? 16 3 Biological sciences, pathogens, road salt or lead in drinking water. 22 17 Physical sciences: Water cycle and hydrology. 23 19

  1. Nanoparticle systems that exploit host biology for diagnosis and treatment of disease

    E-Print Network [OSTI]

    Lin, Kevin (Kevin Yu-Ming)

    2014-01-01

    Over the past 30 years, advances in nanotechnology have generated a multitude of nanostructures exhibiting a breadth of physical, chemical, and biological properties that have tremendous potential to improve the detection ...

  2. Development and evaluation of a lignite-stillage carrier system for application and study of biological control agents 

    E-Print Network [OSTI]

    Jones, Richard Worth

    1983-01-01

    Approved as to style and content by: (Chairman of Committee) (Member) (Member) (Head of Department) December 1983 ABSTRACT Development and Evaluation of a Lignite-Sti liege Carrier System for Application and Study of Biological Agents. (December 1983.... The carrier system consisted of lignite granules amended with thin liquid sti llage. This carrier system supported fungal propagule production as high as 2. 0 x 10g propagules/g carrier. Thin liquid sti llage supported the production of 4. 0-4. 5 mg of g...

  3. 2003 Synthetic Biology study

    E-Print Network [OSTI]

    Endy, Drew

    2007-08-14

    Biology is a technology for processing information, materials, and energy. As a technology platform, biological systems provide access to artifacts and processes across a range of scales (e.g., the ribosome is a programmable ...

  4. Performance of a New PIC Receiver for the reverse link of a DS-CDMA System in a Rayleigh Fading Channel

    E-Print Network [OSTI]

    Lee, Jae Hong

    Performance of a New PIC Receiver for the reverse link of a DS-CDMA System in a Rayleigh Fading and A WGN. For the CDMA system a new parallel inter- ference cancellation (PIC) receiver with an adaptive (MF) out- puts. The BER of the proposed PIC receiver is ob- tained by simulation and compared

  5. Biological Science courses BE 513 Molecuar and Celluar Biology

    E-Print Network [OSTI]

    Fang-Yen, Christopher

    Biological Science courses BE 513 Molecuar and Celluar Biology BE 555 Nanoscale Systems Biology. BIOM 501 Mechanisms of Disease and Therapeutic BIOM 600 Cell Biology BMB 508 Molecular Biophysics I BMB 509 Macromolecular Biophysics II BMB 567 Bioinorganic Chemistry BMB 590 Biological Physics BMB 614

  6. Training Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservationBio-Inspired Solar FuelTechnologyTel:FebruaryEIA's Today8TopoTowardsListTraining

  7. HELPFUL LINKS

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformation Current HABFESOpportunitiesNERSCGrid-based29 1.921 1.892 1.887HDFViewHelpful

  8. MSDS Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCentermillion toMSDS on the internet The Office of Occupational

  9. Linking Ecological Function and Ecosystem Service Values of Estaurine Habitat Types Associated with a Barrier Island System 

    E-Print Network [OSTI]

    Francis, Jeffrey Michael

    2012-12-10

    for the provision of ecosystem services. This study is designed to model each habitat type in an effort to explicitly link the major estuarine habitat types of Mustang Island (oyster reefs, seagrass meadows, and intertidal salt marsh) to their contribution...

  10. Lechowicz, M.J., 2001. Phenology. In the Encyclopedia of Global Environmental Change, Volume 2. The Earth System:biological and ecological dimensions of global environmental

    E-Print Network [OSTI]

    Lechowicz, Martin J.

    Lechowicz, M.J., 2001. Phenology. In the Encyclopedia of Global Environmental Change, Volume 2. The Earth System:biological and ecological dimensions of global environmental change. Wiley, London. Phenology Martin J. Lechowicz Department of Biology McGill University Montréal, Québec, CANADA Phenology

  11. Faculty Links - Links - Cyclotron Institute

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformation Current HABFES OctoberEvan Racah861 ANNUAL|FacilityAbout » Facts,Faculty

  12. A Biological Global Positioning System: Considerations for Tracking Stem Cell Behaviors in the Whole Body

    E-Print Network [OSTI]

    Li, Shengwen Calvin; Tachiki, Lisa May; Luo, Jane; Dethlefs, Brent A.; Chen, Zhongping; Loudon, William G.

    2010-01-01

    human airway using a microelectromechanical system endoscopethree- dimensional microelectromechanical endoscopic sweptof a rotational microelectromechanical system probe. Optics

  13. 1834 IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, VOL. 22, NO. 11, NOVEMBER 2011 Analysis of Link Lifetimes and Neighbor

    E-Print Network [OSTI]

    Yao, Zhongmei

    , Senior Member, IEEE Abstract--Several models of user churn, resilience, and link lifetime have recently restricted to the successor of the failed zone in the DHT space. To understand neighbor churn Churn. ! 1 INTRODUCTION RESILIENCE of distributed peer-to-peer (P2P) networks under user churn has

  14. Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Uervirojnangkoorn, Monarin; Zeldin, Oliver B.; Lyubimov, Artem Y.; Hattne, Johan; Brewster, Aaron S.; Sauter, Nicholas K.; Brunger, Axel T.; Weis, William I.

    2015-03-17

    There is considerable potential for X-ray free electron lasers (XFELs) to enable determination of macromolecular crystal structures that are difficult to solve using current synchrotron sources. Prior XFEL studies often involved the collection of thousands to millions of diffraction images, in part due to limitations of data processing methods. We implemented a data processing system based on classical post-refinement techniques, adapted to specific properties of XFEL diffraction data. When applied to XFEL data from three different proteins collected using various sample delivery systems and XFEL beam parameters, our method improved the quality of the diffraction data as well as themore »resulting refined atomic models and electron density maps. Moreover, the number of observations for a reflection necessary to assemble an accurate data set could be reduced to a few observations. These developments will help expand the applicability of XFEL crystallography to challenging biological systems, including cases where sample is limited.« less

  15. Proactive investigation of hydrocarbons released into a linked groundwater-surfacewater hydrologic system: Chevron Estero Marine Terminal

    SciTech Connect (OSTI)

    Tormey, D.; Waldron, J.; Culbertson, D.

    1996-12-31

    When regulatory concern is high, it is critical to address potential ecological impacts early, and hence {open_quotes}close the door{close_quotes} on further unnecessary studies, as illustrated by the Chevron Estero Marine Terminal case study. Cutter stock (diesel-like hydrocarbons) leaked from a facility sump, reached the water table, and migrated laterally an unknown distance. Media reports led to heightened public and regulatory concern, and the information gap led to worst-case assumptions about the extent and impact of the release to the biota of a nearby creek (Toro Creek). Chevron undertook a rapid assessment with two goals: define the extent of cutter stock in soil and groundwater, and close the door on expensive biological studies of Toro Creek. The assessment consisted of installing a large number of small-diameter soil borings and temporary well points, monitor wells, and analyzing soil, groundwater, and hydraulic gradient. The information gap was very rapidly filled with the following comprehensive picture: (1) the cutter stock had mixed with heavy crude oil, was highly adsorptive to soil and practically insoluble in water; (2) the cutter stock had not reached Toro Creek; (3) Toro Creek is always a losing stream, hydraulically connected to groundwater beneath the Chevron facility; (4) the groundwater basin is isolated by bedrock boundaries. Early attention to Toro Creek and the Pacific Ocean, and open communication with concerned agencies effectively limited the investigation to soil and water.

  16. Coherence and Decoherence in Biological Systems: Principles of Noise Assisted Transport and the Origin of Long-lived Coherences

    E-Print Network [OSTI]

    A. W. Chin; S. F. Huelga; M. B. Plenio

    2012-03-15

    The quantum dynamics of transport networks in the presence of noisy environments have recently received renewed attention with the discovery of long-lived coherences in different photosynthetic complexes. This experimental evidence has raised two fundamental questions: Firstly, what are the mechanisms supporting long-lived coherences and secondly, how can we assess the possible functional role that the interplay of noise and quantum coherence might play in the seemingly optimal operation of biological systems under natural conditions? Here we review recent results, illuminate them at the hand of two paradigmatic systems, the Fenna-Matthew-Olson (FMO) complex and the light harvesting complex LHII, and present new progress on both questions. In particular we introduce the concept of the phonon antennae and discuss the possible microscopic origin or long-lived electronic coherences.

  17. Development and Applications Of Photosensitive Device Systems To Studies Of Biological And Organic Materials

    SciTech Connect (OSTI)

    Gruner, Sol

    2012-01-20

    The primary focus of the grant is the development of new x-ray detectors for biological and materials work at synchrotron sources, especially Pixel Array Detectors (PADs), and the training of students via research applications to problems in biophysics and materials science using novel x-ray methods. This Final Progress Report provides a high-level overview of the most important accomplishments. These major areas of accomplishment include: (1) Development and application of x-ray Pixel Array Detectors; (2) Development and application of methods of high pressure x-ray crystallography as applied to proteins; (3) Studies on the synthesis and structure of novel mesophase materials derived from block co-polymers.

  18. Electro-mechanical energy conversion system having a permanent magnet machine with stator, resonant transfer link and energy converter controls

    DOE Patents [OSTI]

    Skeist, S. Merrill; Baker, Richard H.

    2006-01-10

    An electro-mechanical energy conversion system coupled between an energy source and an energy load comprising an energy converter device including a permanent magnet induction machine coupled between the energy source and the energy load to convert the energy from the energy source and to transfer the converted energy to the energy load and an energy transfer multiplexer to control the flow of power or energy through the permanent magnetic induction machine.

  19. EFFECTS OF POLLUTANTS ON BIOLOGICAL SYSTEMS. CHAPTER FROM THE ENERGY AND ENVIRONMENT DIVISION ANNUAL REPORT 1979

    E-Print Network [OSTI]

    Authors, Various

    2010-01-01

    tion of paint," in Progress in Organic Coatings, J. -60 (organic coatings from aqueous systems is widely used, for example, to paint

  20. Preparation of a Magnetically Switchable Bioelectrocatalytic System Employing Cross-Linked Enzyme Aggregates in Magnetic Mesocellular Carbon Foam

    SciTech Connect (OSTI)

    Lee, Jinwoo; Lee, Dohun; Oh, Eunkeu; Kim, Jaeyun; Kim, Young-Pil; Jin, Sunmi; Kim, Hak Sung; Hwang, Yosun; Kwak, Ja Hun; Park, Je-Geun; Shin, Chae-Ho; Kim, Jungbae; Hyeon, Taeghwan

    2005-11-18

    Nanostructured magnetic materials (NMMs)[1] have attracted much attention recently because of their broad biotechnological applications including support matrices for enzyme immobilization,[2] immunoassays,[3] drug delivery,[4] and biosensors.[ 5] Specifically, the easy separation and controlled placement of NMMs by means of an external magnetic field enables their application in the development of immobilized enzyme processes[2] and the construction of magnetically controllable bio-electrocatalytic systems.[5, 6] Herein, we demonstrate the use of immobilized enzymes in NMMs for magnetically switchable bio-electrocatalysis.

  1. Identification of Transition-Based Models of Biological Systems using Logic Programming

    E-Print Network [OSTI]

    New South Wales, University of

    the identification of: pure Petri nets; extended Petri nets; networks that re-use sub-nets; network from data Sydney 2052, Australia #12;Abstract Transition systems like Petri nets have been widely used to model networks and to capture the dynamics of system behaviour. To date, these models have mostly been specified

  2. Inverse problems in systems biology This article has been downloaded from IOPscience. Please scroll down to see the full text article.

    E-Print Network [OSTI]

    Schuster, Peter

    ]. The experimental data base for systems biology comes from various high-throughput technologies applied in fields, consideration of the interplay between the parts of systems is indispensable for analyzing, modeling experimental techniques and computational methods in order to construct predictive models. Both in building

  3. Protein-Folding Landscapes in Multi-Chain Systems Major Classification: Biological Sciences

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield MunicipalTechnical Report:Speeding accessby aLEDSpeeding accessSpeedingPATENTS-Protein-Folding

  4. Biological Systems Science Division (BSSD) | U.S. DOE Office of Science

    Office of Science (SC) Website

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power AdministrationRobust,Field-effectWorkingLosThe 26thI D- 6 0GrantsThe LifeAtomic,Benjamin D.Betsythe(SC)

  5. Integrated Omics in Systems Biology: The New Frontier for Environmental Biotechnology

    SciTech Connect (OSTI)

    Hazen, Terry C.

    2008-08-12

    Environmental biotechnology encompasses a wide range of characterization, monitoring and control for bioenergy and bioremediation technologies that are based on biological processes. Recent breakthroughs in our understanding of biogeochemical processes and genomics are leading to exciting new and cost effective ways to monitor and manipulate the environment and potentially produce bioenergy fuels as we also cleanup the environment. Indeed, our ability to sequence an entire microbial genome in just a few hours is leading to similar breakthroughs in characterizing proteomes, metabolomes, phenotypes, and fluxes for organisms, populations, and communities. Understanding and modeling functional microbial community structure and stress responses in subsurface environments has tremendous implications for our fundamental understanding of biogeochemistry and the potential for making biofuel breakthroughs. Monitoring techniques that inventory and monitor terminal electron acceptors and electron donors, enzyme probes that measure functional activity in the environment, functional genomic microarrays, phylogenetic microarrays, metabolomics, proteomics, and quantitative PCR are also being rapidly adapted for studies in environmental biotechnology. Integration of all of these new high throughput techniques using the latest advances in bioinformatics and modeling will enable break-through science in environmental biotechnology. A review of these techniques with examples from field studies and lab simulations will be discussed.

  6. Physical, Chemical & Biological Processes of the Environment A Systems Approach to Solving Environmental Problems

    E-Print Network [OSTI]

    the environment and human health 3 September 1 No class (Labor Day) 4 3 Human health and ecological risk an environmental or human health risk? 19 8 Concepts of biosphere systems 20 10 The photosynthetic reaction and its

  7. Biological and environmental efficiency of high producing dairy systems through application of life cycle analysis 

    E-Print Network [OSTI]

    Ross, Stephen Alexander

    2014-11-27

    Dairy production systems are an important global contributor to anthropogenic greenhouse gas (GHG) emissions including methane (CH4), nitrous oxide (N2O) and carbon dioxide (CO2). Due to the role GHG play in climate ...

  8. A Study to Determine the Biological Feasibility of a New Fish-Tagging System : Annual Report 1998-1999.

    SciTech Connect (OSTI)

    Downing, Sandra L.; Prentice, Earl F.; Peterson, Bradley W.; Nunnallee, Edmund P.; Jonasson, Bruce F.

    2000-09-01

    This report covers our work during 1998 and 1999 (FY99) on a project to expand and improve technology for passive-integrated-transponder tags (PIT tags) throughout the Columbia River Basin. The National Marine Fisheries Service (NMFS) in cooperation with the Bonneville Power Administration (BPA) conducted the work. Timely and accurate information derived from PIT-tag technology is increasingly critical to resource stakeholders in assessing the effectiveness of efforts to enhance survival of juvenile and adult salmonids. Continued development of PIT-tag technology will enable researchers and fisheries managers to address issues expressed in the NMFS biological opinions for operation of the Federal Columbia River Power System (FCRPS) and the proposed Snake River Recovery Plan. The FY99 work was divided into individual projects that are covered separately in this report.

  9. Cryoelectron Microscopy as a Functional Instrument for Systems Biology, Structural Analysis & Experimental Manipulations with Living Cells. A comprehensive review of the current works

    E-Print Network [OSTI]

    Oleg V. Gradov; Margaret A. Gradova

    2015-01-18

    The aim of this paper is to give an introductory review of the cryoelectron microscopy as a complex data source for the most of the system biology branches, including the most perspective non-local approaches known as "localomics" and "dynamomics". A brief summary of various cryoelectron mi-croscopy methods and corresponding system biological ap-proaches is given in the text. The above classification can be considered as a useful framework for the primary comprehen-sions about cryoelectron microscopy aims and instrumental tools. We do not discuss any of these concepts in details, but merely point out that their methodological complexity follows only from the structure-functional complexity of biological systems which are investigated in this manner. We also postu-late that one can employ some of the cryoelectron microscopic techniques not only for observation, but also for modification and structural refunctionalization of some biological and similar soft matter objects and microscopic samples. In other worlds, we start with the cryoelectron microscopy as a tool for the sys-tem biology and progress to its applying as an instrument for system biology and functional biomimetics; i.e. "system cryobi-ology" goes over into "synthetic cryobiology" or "cryogenic biomimetics". All these conclusions can be deduced from the most recent works of the latest years, including just submitted foreign papers. This article provides an up-to-date description of the conceptual basis for the novel view on the computational cryoelectron microscopy (in silico) approaches and the data mining principles which lie at the very foundation of modern structural analysis and reconstruction.

  10. Studying chemical reactions in biological systems with MBN Explorer: implementation of molecular mechanics with dynamical topology

    E-Print Network [OSTI]

    Sushko, Gennady B; Verkhovtsev, Alexey V; Volkov, Sergey N; Solov'yov, Andrey V

    2015-01-01

    The concept of molecular mechanics force field has nowadays been widely accepted for studying various processes in biomolecular systems. In this paper we suggest a modification for the standard CHARMM force field, that permits simulations of systems with dynamically changing molecular topologies. The implementation of the modified force field was carried out in the popular program MBN Explorer, and, to support the development, in this paper we provide several case studies where dynamical topology is necessary. In particular, it is shown, that the modified molecular mechanics force field can be applied for studying processes where rupture of chemical bonds plays an essential role, e.g., in irradiation or collision induced damage, transformation and fragmentation processes involving biomolecular systems.

  11. OFFICE OF BIOLOGICAL AND ENVIRONMENTAL RESEARCH Climate and Earth System Modeling

    E-Print Network [OSTI]

    and their interactions with climate under conditions of increasing atmospheric carbon dioxide (CO2 ), we need to develop-analyses of terrestrial ecosystem manipulations of carbon dioxide, warming, nutrients, soil moisture, and tree cover benchmarking system that leverages a growing collection of laboratory, field, and remote sensing data

  12. A PLL-Based Frequency Shift Measurement System for Chemical and Biological Sensing 

    E-Print Network [OSTI]

    Torke, William

    2012-02-14

    while the other assembly contains commercially available PLL and MCU devices, as well as various other discrete components. When mated together, a PLL-based frequency synthesizer is realized, the output frequency of which is ~4.5 GHz. The system is used...

  13. NATIONAL CENTRE FOR BIOLOGICAL SCIENCES Annual Maintenance Contract for Electrical Systems in

    E-Print Network [OSTI]

    Udgaonkar, Jayant B.

    Maintenance Contract for Electrical systems including substations in Mandara hostel-CB site, NCBS : Rs.47,729.00 4. COST OF TENDER DOCUMENT : Rs. 500/- 5. SALE PERIOD : 13/12/2013 TO 23/12/2013 6. TIME:________________DATE:____________ __________________________________ FOR A SUM OF RS. ________________ TOWARDS __________________________________THE COST OF TENDER DOCUMENT

  14. Biology and management of insect pests in North American intensively managed hardwood forest systems.

    SciTech Connect (OSTI)

    Coyle, David R.; Nebeker, T., E.; Hart, E., R.; Mattson, W., J.

    2005-01-01

    Annu. Rev. Entomol. 50:1-29. Abstract Increasing demand for wood and wood products is putting stress on traditional forest production areas, leading to long-term economic and environmental concerns. Intensively managed hardwood forest systems (IMHFS), grown using conventional agricultural as well as forestry methods, can help alleviate potential problems in natural forest production areas. Although IMHFS can produce more biomass per hectare per year than natural forests, the ecologically simplified, monocultural systems may greatly increase the crops susceptibility to pests. Species in the genera Populus and Salix comprise the greatest acreage in IMHFS in North America, but other species, including Liquidambar styracifua and Platanus occidentalis, are also important. We discuss life histories, realized and potential damage, and management options for the most economically infuential pests that affect these hardwood species. The substantial inherent challenges associated with pest management in the monocultural environments created by IMHFS are reviewed. Finally, we discuss ways to design IMHFS that may reduce their susceptibility to pests, increase their growth and productivity potential, and create a more sustainable environment.

  15. D.E. Berg, M.A. Rumsey, J.R. Zayas, "Hardware and Software Developments for the Accurate Time-Linked Data Acquisition System", 2000 ASME Wind Energy Symposium, AIAA/ASME, 2000.

    E-Print Network [OSTI]

    -Linked Data Acquisition System", 2000 ASME Wind Energy Symposium, AIAA/ASME, 2000. HARDWARE AND SOFTWARE DEVELOPMENTS FOR THE ACCURATE TIME-LINKED DATA ACQUISITION SYSTEM* Dale E. Berg, Mark A. Rumsey Wind Energy Corporation Albuquerque, New Mexico Abstract Wind-energy researchers at Sandia National Laboratories have

  16. Systems Biology Model of Interactions Between Tissue Growth Factors and DNA Damage Pathways: Low Dose Response and Cross-Talk in TGFbeta and ATM Signaling

    SciTech Connect (OSTI)

    O'Neill, Peter; Anderson, Jennifer

    2014-10-02

    The etiology of radiation carcinogenesis has been described in terms of aberrant changes that span several levels of biological organization. Growth factors regulate many important cellular and tissue functions including apoptosis, differentiation and proliferation. A variety of genetic and epigenetic changes of growth factors have been shown to contribute to cancer initiation and progression. It is known that cellular and tissue damage to ionizing radiation is in part initiated by the production of reactive oxygen species, which can activate cytokine signaling, and the DNA damage response pathways, most notably the ATM signaling pathway. Recently the transforming growth factor ? (TGF?) pathway has been shown to regulate or directly interact with the ATM pathway in the response to radiation. The relevance of this interaction with the ATM pathway is not known although p53 becomes phosphorylated and DNA damage responses are involved. However, growth factor interactions with DNA damage responses have not been elucidated particularly at low doses and further characterization of their relationship to cancer processes is warranted. Our goal will be to use a systems biology approach to mathematically and experimentally describe the low dose responses and cross-talk between the ATM and TGF? pathways initiated by low and high LET radiation. We will characterize ATM and TGF? signaling in epithelial and fibroblast cells using 2D models and ultimately extending to 3D organotypic cell culture models to begin to elucidate possible differences that may occur for different cell types and/or inter-cellular communication. We will investigate the roles of the Smad and Activating transcription factor 2 (ATF2) proteins as the potential major contributors to cross- talk between the TGF? and ATM pathways, and links to cell cycle control and/or the DNA damage response, and potential differences in their responses at low and high doses. We have developed various experimental approaches to apply to these problems using confocal microscopy and flow cytometry to detail changes at low dose/dose-rate in order to understand individual cell responses, and will establish our mathematical models based on the experimental findings resulting from changes in DNA repair, apoptosis and proliferation.

  17. Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Glass, N Louise [UC Berkeley

    2013-01-25

    N. Louise Glass from the University of California, Berkeley, presents a talk titled "Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

  18. Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Glass, N Louise [UC Berkeley] [UC Berkeley

    2012-03-22

    N. Louise Glass from the University of California, Berkeley, presents a talk titled "Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

  19. ENGINEERING GRaduatE PRoGRams Biological SyStemS engineering Biomedical engineering chemical engineering civil and environmental engineering

    E-Print Network [OSTI]

    California at Davis, University of

    ENGINEERING GRaduatE PRoGRams Biological SyStemS engineering § Biomedical engineering § chemical engineering § civil and environmental engineering computer Science § electrical and computer engineering § materialS Science and engineering mechanical and aeronautical engineering § tranSportation technology

  20. JMLR: Workshop and Conference Proceedings 1: 112-121 Machine Learning in Systems Biology Event based text mining for integrated network construction

    E-Print Network [OSTI]

    Gent, Universiteit

    based text mining for integrated network construction Yvan Saeys yvan.saeys@psb.ugent.be Sofie Van Systems Biology, VIB Department of Molecular Genetics, University of Ghent 9052, Gent, Belgium Editor entities. Text mining techniques have been increasingly useful to extract such information from

  1. Protective link for superconducting coil

    DOE Patents [OSTI]

    Umans, Stephen D. (Belmont, MA)

    2009-12-08

    A superconducting coil system includes a superconducting coil and a protective link of superconducting material coupled to the superconducting coil. A rotating machine includes first and second coils and a protective link of superconducting material. The second coil is operable to rotate with respect to the first coil. One of the first and second coils is a superconducting coil. The protective link is coupled to the superconducting coil.

  2. BioFrameNet: A FrameNet Extension to the Domain of Molecular Biology

    E-Print Network [OSTI]

    Dolbey, Andrew

    2009-01-01

    Walter. 2002. Molecular Biology of the Cell. 4 th Edition.Natural Language Processing and Systems Biology. Artificialand Tools for Systems Biology: 147­174. Werner Dubitzky and

  3. FRAMES-2.0 Software System: Linking to the Groundwater Modeling System (GMS) RT3D and MT3DMS Models

    SciTech Connect (OSTI)

    Whelan, Gene; Castleton, Karl J.; Pelton, Mitch A.

    2007-08-08

    Linkages to the Groundwater Modeling System have been developed at Pacific Northwest National Laboratory to enable the Nuclear Regulatory Commission (NRC) to more realistically assess the risk to the public of radioactive contaminants at NRC-licensed sites. Common software tools presently in use are limited in that they cannot assess contaminant migration through complex natural environments. The purpose of this initiative is to provide NRC with a licensing safety-analysis tool with sufficient power, flexibility, and utility that it can serve as the primary software platform for analyzing the hazards associated with licensing actions at those “complex” sites at which the traditional tools are inappropriate. As a tool designed to realistically approximate prospective doses to the public, this initiative addresses NRC’s safety-performance goal by confirming that licensing actions do not result in undue risk to the public.

  4. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    and structural genomics, and applications for such work cover diverse fields such as energy, agriculture, and environmental cleanup. Get Expertise Babetta Marrone Biofuels...

  5. The confluence of digital design/fabrication and biological principles : systematic knowledge transfer for the development of integrated architectural systems

    E-Print Network [OSTI]

    Sharif, Shani

    2010-01-01

    In the last century, many of the developed computational theories and methods have been inspired by biological principles. The design generation methods, originating from these theories, along with the advances in digital ...

  6. Development of an Implementation Plan Related to Biological Opinion on Operation of the Federal Columbia River Power System ; Step 1: Review and Critique of Implementation Plans.

    SciTech Connect (OSTI)

    Neitzel, Duane A.; Bunn, Amoret

    2000-12-01

    The Draft Biological Opinion on Operation of the Federal Columbia River Power System calls for the development of 1- and 5-year implementation plans. These plans will provide the roadmap for planning and subsequent implementation of actions intended to meet specific performance standards (i.e., biological objectives) in a timely manner. To develop implementation plans the key tasks and sequences of steps must be determined. Those responsible for specific tasks must be identified and they must understand what they need to do. There must be assurances that the resources (human, physical, and fiscal) to complete the tasks are available. Motivation and incentive systems should be set up. Systems to coordinate efforts and guide activity must be devised and installed. An information management system must be designed to manage and analyze data and ensure that appropriate data are collected. This will aid managers in assessing whether individual activities or actions are tracking with stated goals and objectives. Training programs to improve managerial and worker capability in making and implementing plans should be designed. Managerial leadership to guide the efforts of all individuals in achieving the goals of the anadromous and resident fish recovery must be developed. It is the entire process of managing fish recovery in relationship to the Biological Opinion that will guide, coordinate, motivate, and control work and determine the effectiveness and efficiency of plan implementation.

  7. Biological Safety

    Broader source: Energy.gov [DOE]

    The DOE's Biological Safety Program provides a forum for the exchange of best practices, lessons learned, and guidance in the area of biological safety. This content is supported by the Biosurety Executive Team. The Biosurety Executive Team is a DOE-chartered group. The DOE Office of Worker Safety and Health Policy provides administrative support for this group. The group identifies biological safety-related issues of concern to the DOE and pursues solutions to issues identified.

  8. Recorded Lessons Links

    E-Print Network [OSTI]

    math

    2013-04-24

    MA 15400 Online Lessons Links. Spring 2013. PP = PowerPoint. Boiler Cast Link = A recording of that days class. (this link will take you to all of the recordings).

  9. Energy Efficiency Links

    U.S. Energy Information Administration (EIA) Indexed Site

    Energy Efficiency Organizations Energy Efficiency Organizations Release Date: October 1999 Last Updated: Septembert 2009 EIA Links Disclaimer: These pages contain hypertext links...

  10. Optimization Online Links

    E-Print Network [OSTI]

    Optimization Online Links. Optimization related societies. Mathematical Optimization Society · SIAM · INFORMS. Optimization related journals. Mathematical ...

  11. Petri net modelling of biological Claudine Chaouiya

    E-Print Network [OSTI]

    Breitling, Rainer

    Petri net modelling of biological networks Claudine Chaouiya Submitted: 31st March 2007; Received into the functioning of complex biological networks. In this context, Petri nets (PNs) have recently emerged of the computational systems biology. Keywords: dynamical modelling; Petri nets; biological networks INTRODUCTION

  12. National Laboratory] Basic Biological Sciences(59) Biological...

    Office of Scientific and Technical Information (OSTI)

    Achievements of structural genomics Terwilliger, Thomas C. Los Alamos National Laboratory Basic Biological Sciences(59) Biological Science Biological Science Abstract Not...

  13. Vibrations, Quanta and Biology

    E-Print Network [OSTI]

    S. F. Huelga; M. B. Plenio

    2013-06-27

    Quantum biology is an emerging field of research that concerns itself with the experimental and theoretical exploration of non-trivial quantum phenomena in biological systems. In this tutorial overview we aim to bring out fundamental assumptions and questions in the field, identify basic design principles and develop a key underlying theme -- the dynamics of quantum dynamical networks in the presence of an environment and the fruitful interplay that the two may enter. At the hand of three biological phenomena whose understanding is held to require quantum mechanical processes, namely excitation and charge transfer in photosynthetic complexes, magneto-reception in birds and the olfactory sense, we demonstrate that this underlying theme encompasses them all, thus suggesting its wider relevance as an archetypical framework for quantum biology.

  14. Ising-link Quantum Gravity

    E-Print Network [OSTI]

    Tom Fleming; Mark Gross; Ray Renken

    1994-01-04

    We define a simplified version of Regge quantum gravity where the link lengths can take on only two possible values, both always compatible with the triangle inequalities. This is therefore equivalent to a model of Ising spins living on the links of a regular lattice with somewhat complicated, yet local interactions. The measure corresponds to the natural sum over all 2^links configurations, and numerical simulations can be efficiently implemented by means of look-up tables. In three dimensions we find a peak in the ``curvature susceptibility'' which grows with increasing system size. However, the value of the corresponding critical exponent as well as the behavior of the curvature at the transition differ from that found by Hamber and Williams for the Regge theory with continuously varying link lengths.

  15. Biological preconcentrator

    DOE Patents [OSTI]

    Manginell, Ronald P. (Albuquerque, NM); Bunker, Bruce C. (Albuquerque, NM); Huber, Dale L. (Albuquerque, NM)

    2008-09-09

    A biological preconcentrator comprises a stimulus-responsive active film on a stimulus-producing microfabricated platform. The active film can comprise a thermally switchable polymer film that can be used to selectively absorb and desorb proteins from a protein mixture. The biological microfabricated platform can comprise a thin membrane suspended on a substrate with an integral resistive heater and/or thermoelectric cooler for thermal switching of the active polymer film disposed on the membrane. The active polymer film can comprise hydrogel-like polymers, such as poly(ethylene oxide) or poly(n-isopropylacrylamide), that are tethered to the membrane. The biological preconcentrator can be fabricated with semiconductor materials and technologies.

  16. Detter, John C. [Los Alamos National Laboratory] Basic Biological

    Office of Scientific and Technical Information (OSTI)

    State of the Art for Autonomous Detection Systems using Genomic Sequencing Detter, John C. Los Alamos National Laboratory Basic Biological Sciences(59) Biological Science...

  17. Biomimetics Engineering from Biology

    E-Print Network [OSTI]

    Agogino, Alice M.

    Biomimetics or Engineering from Biology Hari Dharan Department of Mechanical Engineering University" ­ copying only? !!"Biologically-Inspired Design" !!"Engineering from Biology" Definition !!It is not "biology for engineers". !!It is not "imitating" or "copying" biology. !!It is not "reverse

  18. Carbon Cycling and Biosequestration Integrating Biology and Climate Through Systems Science Report from the March 2008 Workshop

    SciTech Connect (OSTI)

    Graber, J.; Amthor, J.; Dahlman, R.; Drell, D.; Weatherwax, S.

    2008-12-01

    One of the most daunting challenges facing science in the 21st Century is to predict how Earth's ecosystems will respond to global climate change. The global carbon cycle plays a central role in regulating atmospheric carbon dioxide (CO{sub 2}) levels and thus Earth's climate, but our basic understanding of the myriad of tightly interlinked biological processes that drive the global carbon cycle remains limited at best. Whether terrestrial and ocean ecosystems will capture, store, or release carbon is highly dependent on how changing climate conditions affect processes performed by the organisms that form Earth's biosphere. Advancing our knowledge of biological components of the global carbon cycle is thus crucial to predicting potential climate change impacts, assessing the viability of climate change adaptation and mitigation strategies, and informing relevant policy decisions. Global carbon cycling is dominated by the paired biological processes of photosynthesis and respiration. Photosynthetic plants and microbes of Earth's land-masses and oceans use solar energy to transform atmospheric CO{sub 2} into organic carbon. The majority of this organic carbon is rapidly consumed by plants or microbial decomposers for respiration and returned to the atmosphere as CO{sub 2}. Coupling between the two processes results in a near equilibrium between photosynthesis and respiration at the global scale, but some fraction of organic carbon also remains in stabilized forms such as biomass, soil, and deep ocean sediments. This process, known as carbon biosequestration, temporarily removes carbon from active cycling and has thus far absorbed a substantial fraction of anthropogenic carbon emissions.

  19. Gravitational and Space Biology 18(2) June 2005 11 WORMS IN SPACE? A MODEL BIOLOGICAL DOSIMETER

    E-Print Network [OSTI]

    Baillie, David

    is available about the biological consequences of solar flares. Biological systems are not simply passive about up-coming meetings, abstracts, in- house publications, researchers' contact information

  20. Millersvilie Find this handbook electronically on the Biology

    E-Print Network [OSTI]

    Hardy, Christopher R.

    BIOLOGY STUDENT HANDBOOK 2014-2015 Millersvilie University Find this handbook electronically on the Biology homepage (www.millersville.edu/biology/) under "Quick Links". #12;Welcome! Welcome this Biology Student Handbook. We hope that you will find this handbook useful throughout your career

  1. Wind Power Link

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Wind Power Links These other web sites may provide additional information of interest: American Wind Energy Association Idaho Department of Energy Wind Power Information Utah...

  2. Transactions Dynamic Article Links

    E-Print Network [OSTI]

    Govindjee

    of the water splitting reaction.2 We summarize below the steps that precede biological oxi- dation of water The water oxidizing complex, tyrosine 161 and the surrounding amino acids (Top).5 The location of tyrosine 161, water molecules and CaMn4O5 cluster in Photosystem II (Bottom).5 The top image was made with VMD

  3. Biological Engineering integrates life sciences

    E-Print Network [OSTI]

    Chen, Tsuhan

    of biological systems. Biological Engineering impacts the well-being of humans, plants, and animals through and global challenges such as ensuring safe and sustainable food and energy supplies, protecting natural agencies. Products of their efforts help ensure a safe and adequate supply of food and water, create new

  4. A firmware implementation of a Quad HOLA S-LINK to PCI Express interface for use in the ATLAS Trigger DAQ system

    E-Print Network [OSTI]

    Slenders, Daniel

    2014-01-01

    The firmware for a PCI Express interface card with four on-board high-speed optical S-LINKS (FILAREXPRESS) has been developed. This was done for an Altera Stratix II GX FPGA. Furthermore, detection of the available channels through a pull-up resistor and a readout of the on-board temperature sensor were implemented.

  5. Biological Mass Spectrometry and Shotgun Proteomics of Microbial Systems: Methods for studying microbial physiology from isolates to environmental communities

    SciTech Connect (OSTI)

    Dill, Brian; Young, Jacque C; Carey, Patricia A; Verberkmoes, Nathan C

    2010-01-01

    Microbial ecology is currently experiencing a renaissance spurred by the rapid development of molecular techniques and omics technologies in particular. As never before, these tools have allowed researchers in the field to produce a massive amount of information through in situ measurements and analysis of natural microbial communities, both vital approaches to the goal of unraveling the interactions of microbes with their environment and with one another. While genomics can provide information regarding the genetic potential of microbes, proteomics characterizes the primary end-stage product, proteins, thus conveying functional information concerning microbial activity. Advances in mass spectrometry instrumentation and methodologies, along with bioinformatic approaches, have brought this analytic chemistry technique to relevance in the biological realm due to its powerful applications in proteomics. Mass spectrometry-enabled proteomics, including bottom-up and top-down approaches, is capable of supplying a wealth of biologically-relevant information, from simple protein cataloging of the proteome of a microbial community to identifying post-translational modifications of individual proteins.

  6. What rough beast? Synthetic Biology and the Future of Biosecurity

    E-Print Network [OSTI]

    Mohr, Scott C.

    Synthetic biology seeks to create modular biological parts that can be assembled into useful devices, allowing the modification of biological systems with greater reliability, at lower cost, with greater speed, and by a ...

  7. DEPARTMENT OF BIOLOGY AND MARINE BIOLOGY

    E-Print Network [OSTI]

    Olszewski Jr., Edward A.

    DEPARTMENT OF BIOLOGY AND MARINE BIOLOGY GRADUATE PROGRAM REVIEW 2000-2007 #12;i TABLE OF CONTENTS ....................................................................... 389 #12;ii EXECUTIVE SUMMARY The Department of Biology and Marine Biology contributes importantly). The department began offering the Master of Science in Marine Biology in 1980, and the Master of Science

  8. Relaxed laser control of uncooled multiple-input and multiple-output dense wavelength-division multiplexing systems for low power consumption data communication links

    E-Print Network [OSTI]

    von Lindeiner, J. B.; Ingham, J. D.; Penty, R. V.; White, I. H.

    2014-01-01

    [2] and therefore may not be sustainable as the number of links required grows. 2 Currently, the 100 Gigabit Ethernet (GbE) standard defines physical layer port types (100GBASE-LR4 and 100GBASE-ER4) that use Coarse Wavelength... generation standards are likely to be based on an architecture with architecture [4, 5]. Despite allowing for the introduction of new modulation formats to improve spectral efficiency and transmission distance, future Ethernet standards...

  9. Biology reflective assessment curriculum

    E-Print Network [OSTI]

    Bayley, Cheryl Ann

    2011-01-01

    Penick, J. E. (1998). Biology: A community context. Newof a standards-based high school biology curriculum.The American Biology Teacher Li, J. , Klahr, D. , & Siler,

  10. Preparing for Transfer Biological Engineering

    E-Print Network [OSTI]

    Walter, M.Todd

    Preparing for Transfer Majors: Biological Engineering Chemical Engineering Civil Engineering Computer Science Electrical & Computer Engineering Engineering Physics Environmental Engineering Information Science, Systems, & Technology Materials Science & Engineering Mechanical Engineering Operations

  11. Preparing for Transfer Biological Engineering

    E-Print Network [OSTI]

    Walter, M.Todd

    Preparing for Transfer Majors: Biological Engineering Biomedical Engineering* Chemical Engineering Civil Engineering Computer Science Electrical & Computer Engineering Engineering Physics Environmental Engineering Information Science, Systems, & Technology Materials Science & Engineering Mechanical Engineering

  12. Location linked information

    E-Print Network [OSTI]

    Mankins, Matthew William David, 1975-

    2003-01-01

    This work builds an infrastructure called Location Linked Information that offers a means to associate digital information with public, physical places. This connection creates a hybrid virtual/physical space, called glean ...

  13. Development of a Model, Metal-reducing Microbial Community for a System Biology Level Assessment of Desulfovibrio vulgaris as part of a Community

    SciTech Connect (OSTI)

    Elias, Dwayne; Schadt, Christopher; Miller, Lance; Phelps, Tommy; Brown, S. D.; Arkin, Adam; Hazen, Terry; Drake, Megin; Yang, Z.K.; Podar, Mircea

    2010-05-17

    One of the largest experimental gaps is between the simplicity of pure cultures and the complexity of open environmental systems, particularly in metal-contaminated areas. These microbial communities form ecosystem foundations, drive biogeochemical processes, and are relevant for biotechnology and bioremediation. A model, metal-reducing microbial community was constructed as either syntrophic or competitive to study microbial cell to cell interactions, cell signaling and competition for resources. The microbial community was comprised of the metal-reducing Desulfovibrio vulgaris Hildenborough and Geobacter sulfurreducens PCA. Additionally, Methanococcus maripaludis S2 was added to study complete carbon reduction and maintain a low hydrogen partial pressure for syntrophism to occur. Further, considerable work has been published on D. vulgaris and the D. vulgaris/ Mc. maripaludis co-culture both with and without stress. We are extending this work by conducting the same stress conditions on the model community. Additionally, this comprehensive investigation includes physiological and metabolic analyses as well as specially designed mRNA microarrays with the genes for all three organisms on one slide so as to follow gene expression changes in the various cultivation conditions as well as being comparable to the co- and individual cultures. Further, state-of -the-art comprehensive AMT tag proteomics allows for these comparisons at the protein level for a systems biology assessment of a model, metal-reducing microbial community. Preliminary data revealed that lactate oxidation by D. vulgaris was sufficient to support both G. sulfurreducens and M. maripaludis via the excretion of H2 and acetate. Fumarate was utilized by G. sulfurreducens and reduced to succinate since neither of the other two organisms can reduce fumarate. Methane was quantified, suggesting acetate and H2 concentrations were sufficient for M. maripaludis. Steady state community cultivation will allow for a comprehensive, system biology level analysis of a metal-reducing microbial community.

  14. A Study to Determine the Biological Feasibility of a New Fish Tagging System : Annual Report 1990-1993.

    SciTech Connect (OSTI)

    Prentice, Earl F.; Maynard, D.J.; Downing, S.L. (and others)

    1994-01-01

    In 1983, the National Marine Fisheries Service (NMFS) began a multiyear cooperative research program with the Bonneville Power Administration (BPA) to evaluate a new miniaturized identification system that could be used with salmonids. The system is referred to as the passive-integrated-transponder (PIT) tagging and interrogation system. The program has focused on determining the effects of PIT tags on juvenile and adult salmonids, as well as the development and evaluation of tagging and interrogation methods. Earlier results of the program have been reported in annual reports and journal articles cited in this report. This report covers the work per formed from 1990 through 1993. For convenience, the report is divided into three sections: (1) Interrogation and separation systems at Columbia River Basin dams; (2) Systems development and evaluation; and (3) Information and technology transfer.

  15. Biological and Environmental Research

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAudits & InspectionsBeryllium andSamplerBiological Imaging by

  16. Biological Sciences http://www.clas.wayne.edu/biology/

    E-Print Network [OSTI]

    Finley Jr., Russell L.

    Biological Sciences http://www.clas.wayne.edu/biology/ Divisions: Evolutionary and Organismal Biology Molecular Biology and Biotechnology Cellular, Developmental, and Neurobiology #12;Biological Sciences http://www.clas.wayne.edu/biology/ · Cell Biology and Cytogenetics (Beningo, Tucker, Greenberg

  17. arXiv:q-bio/0607031v1[q-bio.NC]20Jul2006 From Systems Biology to Dynamical

    E-Print Network [OSTI]

    Tóth, János

    ´oth Department of Analysis, Institute of Mathematics, Faculty of Sciences, Budapest University of Technology with microscopic details. It might be interpreted as the renaissance of cybernetics [1] and of system theory [2

  18. Genomic and Systems Biology Analyses of Social Behavior or Evolutionary Genomic Analyses of Insect Society: Eat, Drink, and Be Scary (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Robinson, Gene

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gene Robinson of the University of Illinois on "Genomic and Systems Biology Analyses of Social Behavior" at the 6th Annual Genomics of Energy & Environment Meeting on March 23, 2011

  19. The Encyclopedia of Systems Biology and OMICS (first presentation) and The ISA Infrastructure for Multi-omics Data (second presentation) (GSC8 Meeting)

    SciTech Connect (OSTI)

    Kolker, Eugene; Sansone, Susanna

    2011-09-11

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Eugene Kolker from Seattle Children's Hospital briefly discusses "The Encyclopedia of Systems Biology and OMICS," followed by Susanna Sansone from the EBI on "The ISA Infrastructure for multi-omics data" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 11, 2009.

  20. The Encyclopedia of Systems Biology and OMICS (first presentation) and The ISA Infrastructure for Multi-omics Data (second presentation) (GSC8 Meeting)

    ScienceCinema (OSTI)

    Kolker, Eugene [Seattle Children's Hospital]; Sansone, Susanna [EBI

    2011-04-28

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Eugene Kolker from Seattle Children's Hospital briefly discusses "The Encyclopedia of Systems Biology and OMICS," followed by Susanna Sansone from the EBI on "The ISA Infrastructure for multi-omics data" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 11, 2009.

  1. Genomic and Systems Biology Analyses of Social Behavior or Evolutionary Genomic Analyses of Insect Society: Eat, Drink, and Be Scary (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Robinson, Gene

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gene Robinson of the University of Illinois on "Genomic and Systems Biology Analyses of Social Behavior" at the 6th Annual Genomics of Energy & Environment Meeting on March 23, 2011

  2. New Optical Link Technologies for HEP Experiments

    E-Print Network [OSTI]

    P. Delurgio; W. Fernando; B. Salvachua; D. Lopez; R. Stanek; D. Underwood

    2011-09-30

    As a concern with the reliability and mass of current optical links in LHC experiments, we are investigating CW lasers and light modulators as an alternative to VCSELs. In addition we are developing data links in air, utilizing steering by MEMS mirrors and optical feedback paths for the control loop. Laser, modulator, and lens systems used are described, as well as two different electronic systems for a free space steering feedback loop. Our prototype system currently operates at 1.25 Gb/s, but could be upgraded. This link works over distances of order meters. Such links might enable one to move communication lasers (e.g. VCSELs) and optical fibers out of tracking detectors, for reasons such as reliability and power consumption. Some applications for free space data links, such as local triggering and data readout and trigger-clock distribution and links for much longer distances are also discussed.

  3. ARM - Quick Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Comments?govInstrumentsnoaacrnBarrow, Alaska OutreachCalendarPress Releases Related2 Science TeamLinks Related

  4. Resources & Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

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  5. Links - 88-Inch Cyclotron

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail.Theory ofDid you notHeat PumpsTechnologies |LibraryCenterCenterLinks Berkeley Lab

  6. Links - Cyclotron Institute

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

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  7. Nuclear Data Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJessework usesofPublications64NewsroomNontoxicAdministrationLinks to Other

  8. Related Links - Hanford Site

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservation of Fe(II) by Carbon-RichProtonAbout UsRegional companies eye growthRelated Links

  9. Links (pbl/contracts)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would likeUniverseIMPACTThousand CubicResourcelogo and-E C H2015TrayDevices - Useful LinksDOE

  10. Stress and Telomere Biology: A Lifespan Perspective

    E-Print Network [OSTI]

    2013-01-01

    10.1016/j.psyneuen.2013.03.010. Stress and Telomere Biology:we provided evidence that stress-related telomere erosionvery early in life. Prenatal stress exposure was linked to

  11. Response Operators for Markov Processes in a Finite State Space: Radius of Convergence and Link to the Response Theory for Axiom A Systems

    E-Print Network [OSTI]

    Valerio Lucarini

    2015-06-23

    Using straightforward linear algebra we derive response operators describing the impact of small perturbations to finite state Markov processes. The results can be used for studying empirically constructed - e.g. from observations or through coarse graining of model simulations - finite state approximation of statistical mechanical systems. Recent results concerning the convergence of the statistical properties of finite state Markov approximation of the full asymptotic dynamics on the SRB measure in the limit of finer and finer partitions of the phase space are suggestive of some degree of robustness of the obtained results in the case of Axiom A system. Our findings give closed formulas for the linear and nonlinear response theory at all orders of perturbation and provide matrix expressions that can be directly implemented in any coding language, plus providing bounds on the radius of convergence of the perturbative theory. In particular, we relate the convergence of the response theory to the rate of mixing of the unperturbed system. One can use the formulas obtained for finite state Markov processes to recover previous findings obtained on the response of continuous time Axiom A dynamical systems to perturbations, by considering the generator of time evolution for the measure and for the observables.

  12. The porous media model for the hydraulic system of a conifer tree: linking sap flux data to1 transpiration rate2

    E-Print Network [OSTI]

    Soatto, Stefano

    hydraulic system but also11 requires a direct estimation of its properties. Our proposed PM model play a dominant role in controlling CO2 uptake and4 partitioning of net radiation between latent-atmosphere flux measurement networks6 and free air CO2 enrichment (FACE) experiments require a quantitative

  13. OBESITY ACALIFORNIA LINKED STATUSREPORT

    E-Print Network [OSTI]

    Ullrich, Paul

    OBESITY ACALIFORNIA LINKED STATUSREPORT CANCERS 1 9 8 8 - 2 0 0 9 SearchingforCauses&Cures CALIFORNIA CANCER REGISTRY CALIFORNIA DEPARTMENT OF PUBLIC HEALTH KEN MADDY #12;#12;SearchingforCauses&Cures was supported by the California Department of Public Health as part of the statewide cancer reporting pro- gram

  14. Biology 3515/Chemistry 3515 Biological Chemistry Laboratory

    E-Print Network [OSTI]

    Simons, Jack

    Biology 3515/Chemistry 3515 Biological Chemistry Laboratory Spring 2013 (Draft Syllabus, 23 August 2012) Course Description and Objectives: This course is intended for students who have taken Biology and function, particularly for enzymes. Prerequisites: Biology 3510 or Chemistry 3510 Instructor: David P

  15. System Integration -A Major Step toward Lab on Sin et al. Journal of Biological Engineering 2011, 5:6

    E-Print Network [OSTI]

    Wong, Pak Kin

    such as the domination of surface forces over inertial forces, the laminar nature of fluid flow, fast ther- mal to fully realize the potential of microfluidics. In this article, we review several promising system investigating the behavior and the manipulation of small amounts of fluids with characteristic length scales

  16. The transition phase in Nova Muscae 1998, the dust formation in classical novae and a possible link to intermediate polar systems

    E-Print Network [OSTI]

    A. Retter; W. Liller; G. Garradd

    1999-05-28

    We present results of continuous CCD photometry of Nova Muscae 1998 during 17 nights obtained mainly during the transition phase in the light curve of the young nova. We discovered a periodical oscillation with the period 0.16930 day. This result is important for understanding this peculiar stage in the light curve of certain classical novae. We also note a possible connection between the transition / dust phase in nova light curves and intermediate polar systems.

  17. Loop Quantum Theory Applied to Biology and Nonlinear Whole Biology

    E-Print Network [OSTI]

    Yi-Fang Chang

    2008-01-02

    The loop quantum theory, which constitutes a very small discontinuous space, as new method is applied to biology. The model of protein folding and lungs is proposed. In the model, some known results are used, and four approximate conclusions are obtained: their structures are quantized, their space regions are finite, various singularities correspond to folding and crossed points, and different types of catastrophe exist. Further, based on the inseparability and correlativity of the biological systems, the nonlinear whole biology is proposed, and four basic hypotheses are formed. It may unify reductionism and holism, structuralism and functionalism. Finally, the medical meaning of the theory is discussed briefly.

  18. Block-oriented nonlinear system identification using semidenite programming

    E-Print Network [OSTI]

    Han, Younghee

    2012-01-01

    systems in robotics, mechatronics, biological, and chemicalsystems in robotics, mechatronics, biological and chemical

  19. Missing Links Issue 2 

    E-Print Network [OSTI]

    Multiple Contributors

    1999-01-01

    things out, okay?" Jim kept his hands on Blair's shoulders, rubbing gently but not putting any pressure on him. Staying in his embrace was Blair's decision. "I think I'd like that." He reached up, kissed Jim's lips, letting his tongue slide across.... And those views could make or break him. If only Jim under- . stood. 5 MISSING LINKS 2 He put the laptop back in his room, the lap desk under his bed where boxes of his possessions took up residence. In the week since their argument in the police...

  20. CAMD Nanofabrication Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D B L OBransenBusiness networkingFleetPuget Dr.Home :: Research

  1. CAMD Nanofabrication Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

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  2. ARM - Related Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Comments?govInstrumentsnoaacrnBarrow, Alaska OutreachCalendarPress Releases Related2ActRecovery Act

  3. AlumniLink

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

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  4. Bisfuel links - EFRC

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAudits & InspectionsBerylliumBiomimetic Dye Molecules

  5. Bisfuel links - Photosynthesis tag

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

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  6. Bisfuel links - Presentations

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

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  7. Bisfuel links - Professional organizations

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  8. Bisfuel links - Research centers

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  9. Bisfuel links - Seminars

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  10. Bisfuel links - Video

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  11. Comments on: Links

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  12. WIPP - Related Links

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  13. Nuclear Data Links

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    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration wouldMass map shinesSolarNewsusceptometer under pressure |Cafés November 12,|NuT

  14. Page 11, Links

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  15. A-Z Link

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  16. astro_links.dvi

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power AdministrationRobust,Field-effectWorkingLos Alamos verifiesValidation ofUV-RSS SpectralGOESashleye1February 12,

  17. Helpful Links - Hanford Site

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  18. Helpful Links - Hanford Site

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

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  19. Link Alpha A

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E F G H

  20. Link Alpha B

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E F G Hb

  1. Link Alpha C

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E F G

  2. Link Alpha D

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E F Gd A

  3. Link Alpha E

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E F Gd

  4. Link Alpha F

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E F Gdf

  5. Link Alpha G

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E F Gdfg

  6. Link Alpha H

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E F

  7. Link Alpha I

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Fi A B

  8. Link Alpha J

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Fi A

  9. Link Alpha K

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Fi Ak

  10. Link Alpha L

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Fi Akl

  11. Link Alpha M

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Fi

  12. Link Alpha N

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Fin A

  13. Link Alpha O

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Fin Ao

  14. Link Alpha P

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Fin

  15. Link Alpha Q

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Finq A

  16. Link Alpha R

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Finq

  17. Link Alpha S

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Finqs

  18. Link Alpha T

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E Finqst

  19. Link Alpha V

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D E

  20. Link Alpha W

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D Ew A B C

  1. Link Alpha Y

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D Ew A B

  2. Link Alpha Z

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse BergkampCenter (LMI-EFRC) ProximityCenterLee Facultya A B C D Ew A Bz

  3. Related Links - Hanford Site

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservation of Fe(II) by Carbon-RichProtonAbout UsRegional companies eye growthRelated

  4. Linking the Catawba Sustainability Center to

    E-Print Network [OSTI]

    Buehrer, R. Michael

    Linking the Catawba Sustainability Center to the Local Food System 2015 PREPARED BY: THE VIRGINIA TECH OFFICE OF ECONOMIC DEVELOPMENT #12;Linking the Catawba Sustainability Center to the Local Food visioning, and performance management and benchmarking studies. OED faculty and staff who contributed

  5. Deposition of Biological Aerosols on HVAC Heat Exchangers

    E-Print Network [OSTI]

    on biological contamination on HVAC coils. Muyshondt et al. (1998) discuss the HVAC system as both a source

  6. Quantum physics meets biology

    E-Print Network [OSTI]

    Markus Arndt; Thomas Juffmann; Vlatko Vedral

    2009-11-01

    Quantum physics and biology have long been regarded as unrelated disciplines, describing nature at the inanimate microlevel on the one hand and living species on the other hand. Over the last decades the life sciences have succeeded in providing ever more and refined explanations of macroscopic phenomena that were based on an improved understanding of molecular structures and mechanisms. Simultaneously, quantum physics, originally rooted in a world view of quantum coherences, entanglement and other non-classical effects, has been heading towards systems of increasing complexity. The present perspective article shall serve as a pedestrian guide to the growing interconnections between the two fields. We recapitulate the generic and sometimes unintuitive characteristics of quantum physics and point to a number of applications in the life sciences. We discuss our criteria for a future quantum biology, its current status, recent experimental progress and also the restrictions that nature imposes on bold extrapolations of quantum theory to macroscopic phenomena.

  7. Fish, F. E. 1999. Performance constraints on the maneuverability of flexible and rigid biological systems. Pp. 394-406. In: Proceedings of the Eleventh International Symposium on Unmanned Untethered

    E-Print Network [OSTI]

    Fish, Frank

    394 Fish, F. E. 1999. Performance constraints on the maneuverability of flexible and rigid CONSTRAINTS ON THE MANEUVERABILITY OF FLEXIBLE AND RIGID BIOLOGICAL SYSTEMS. Frank E. Fish Department possessed by fish and marine mammals have been shown to permit high levels of performance with respect

  8. Biological Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail.Theory of raregovAboutRecovery ActTools toBadging, BadgeBecomingReactions Probing

  9. CRITICAL REVIEW OF BIOLOGY AND CONTROL OF OYSTER DRILLS

    E-Print Network [OSTI]

    CRITICAL REVIEW OF BIOLOGY AND CONTROL OF OYSTER DRILLS Urosalpinx and Eupleura Marine Biological L, Farley, Director Critical Review of Biology and Control of Oyster Drills UROSALPINX and EUPLEURA 17 General 17 Nervous System 20 Circulatory System 20 Locomotory System 21 Drilling and Feeding

  10. Biology vs Physics Compare and contrast the situation

    E-Print Network [OSTI]

    Morante, Silvia

    Biology vs Physics Compare and contrast the situation "Complex" structures governed by (as yet-linearity, chaos · Disordered systems Glasses, Spin glasses key-words: frustration, disorder · Biological systems shouldn't become as complicated as the system itself! The key questions about modelling in Biology

  11. Genome Biology 2004, 5:R43 commentreviewsreportsdepositedresearchrefereedresearchinteractionsinformation

    E-Print Network [OSTI]

    Wetenschappen, Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, 3001 Heverlee (Leuven), Belgium. Current literature indices of selected public biological resources in a flexible text-mining system designed towards of selected public biological resources in a flexible text-mining system designed towards the analysis

  12. BIOSCIENCE COMPUTING AND THE ROLE OF COMPUTATIONAL SIMULATION IN BIOLOGY

    E-Print Network [OSTI]

    Clack, Christopher D.

    Chapter 1 BIOSCIENCE COMPUTING AND THE ROLE OF COMPUTATIONAL SIMULATION IN BIOLOGY Christopher D and Biology, drawing inspiration from Biology to solve Computer Sci- ence challenges and simultaneously using new bio-inspired adaptive software to model and simulate biological systems. This Chapter first

  13. MAJOR CONFORMED CONTRACTS LINKS Site/Project Contract Link Idaho

    Office of Environmental Management (EM)

    MAJOR CONFORMED CONTRACTS LINKS SiteProject Contract Link Idaho Idaho Cleanup Project http:www.id.doe.govdoeidICPContractICPContract.htm Advance Mixed Waste Treatment http:...

  14. Multilevel DC link inverter

    DOE Patents [OSTI]

    Su, Gui-Jia

    2003-06-10

    A multilevel DC link inverter and method for improving torque response and current regulation in permanent magnet motors and switched reluctance motors having a low inductance includes a plurality of voltage controlled cells connected in series for applying a resulting dc voltage comprised of one or more incremental dc voltages. The cells are provided with switches for increasing the resulting applied dc voltage as speed and back EMF increase, while limiting the voltage that is applied to the commutation switches to perform PWM or dc voltage stepping functions, so as to limit current ripple in the stator windings below an acceptable level, typically 5%. Several embodiments are disclosed including inverters using IGBT's, inverters using thyristors. All of the inverters are operable in both motoring and regenerating modes.

  15. Splicing bioinformatics to biology

    E-Print Network [OSTI]

    Black, Douglas L; Graveley, Brenton R

    2006-01-01

    Splicing bioinformatics to biology Douglas L Black* andand Developmental Biology, University of Connecticut Health26 May 2006 Genome Biology 2006, 7:317 (doi:10.1186/gb-2006-

  16. On Biology as an Emergent Science

    E-Print Network [OSTI]

    H. Pierre Noyes

    2007-05-31

    Biology is considered here as an "emergent science" in the sense of Anderson and of Laughlin and Pines. It is demonstrated that a straightforward mathematical definition of "biological system" is useful in showing how biology differs in structure from the lower levels in Anderson's "More is Different" hierarchy. Using cells in a chemostat as a paradigmatic exemplar of a biological system, it is found that a coherent collection of metabolic pathways through a single cell in the chemostat also satisfies the proposed definition of a biological system. This provides a theoretical and mathematical underpinning for Young's fundamental model of biological organization and integration. Evidence for the therapeutic efficacy of Young's method of analysis is provided by preliminary results of clinical trials of a specific application of Young's model to the treatment of cancer cachexia.

  17. Statistical methods to infer biological interactions

    E-Print Network [OSTI]

    Tucker, George Jay

    2014-01-01

    Biological systems are extremely complex, and our ability to experimentally measure interactions in these systems is limited by inherent noise. Technological advances have allowed us to collect unprecedented amounts of raw ...

  18. Microfluidics for quantitative biology

    E-Print Network [OSTI]

    Adler, Micha

    2012-01-01

    CALIFORNIA, SAN DIEGO Microfluidics for Quantitative BiologyChapter 1: Microfluidics.………………………………………………………..… 1 1.1OF THE DISSERTATION Microfluidics for Quantitative Biology

  19. Plant Vascular Biology 2010

    SciTech Connect (OSTI)

    Ding, Biao

    2014-11-17

    This grant supported the Second International Conference on Plant Vascular Biology (PVB 2010) held July 24-28, 2010 on the campus of Ohio State University, Columbus, Ohio. Biao Ding (Ohio State University; OSU) and David Hannapel (Iowa State University; ISU) served as co-chairs of this conference. Biao Ding served as the local organizer. PVB is defined broadly here to include studies on the biogenesis, structure and function of transport systems in plants, under conditions of normal plant growth and development as well as of plant interactions with pathogens. The transport systems cover broadly the xylem, phloem, plasmodesmata and vascular cell membranes. The PVB concept has emerged in recent years to emphasize the integrative nature of the transport systems and approaches to investigate them.

  20. Linking Humans and Systems in Nuclear Power

    SciTech Connect (OSTI)

    Jacques Hugo

    2013-02-01

    Traditional engineering methods do not make provision for the integration of human considerations, while traditional human factors methods do not scale well to the complexity of large-scale nuclear power plant projects. Although the need for up-to-date human factors engineering processes and tools is recognised widely in industry, so far no formal guidance has been developed. This article proposes such a framework.

  1. Electrostatic thin film chemical and biological sensor

    DOE Patents [OSTI]

    Prelas, Mark A. (Columbia, MO); Ghosh, Tushar K. (Columbia, MO); Tompson, Jr., Robert V. (Columbia, MO); Viswanath, Dabir (Columbia, MO); Loyalka, Sudarshan K. (Columbia, MO)

    2010-01-19

    A chemical and biological agent sensor includes an electrostatic thin film supported by a substrate. The film includes an electrostatic charged surface to attract predetermined biological and chemical agents of interest. A charge collector associated with said electrostatic thin film collects charge associated with surface defects in the electrostatic film induced by the predetermined biological and chemical agents of interest. A preferred sensing system includes a charge based deep level transient spectroscopy system to read out charges from the film and match responses to data sets regarding the agents of interest. A method for sensing biological and chemical agents includes providing a thin sensing film having a predetermined electrostatic charge. The film is exposed to an environment suspected of containing the biological and chemical agents. Quantum surface effects on the film are measured. Biological and/or chemical agents can be detected, identified and quantified based on the measured quantum surface effects.

  2. Is the Kinetoplast DNA a Percolating Network of Linked Rings at its Critical Point?

    E-Print Network [OSTI]

    Davide Michieletto; Davide Marenduzzo; Enzo Orlandini

    2015-05-14

    In this work we present a computational study of the Kinetoplast genome, modelled as a large number of semiflexible unknotted loops, which are allowed to link with each other. As the DNA density increases, the systems shows a percolation transition between a gas of unlinked rings and a network of linked loops which spans the whole system. Close to the percolation transition, we find that the mean valency of the network, i.e. the average number of loops which are linked to any one loop, is around 3 as found experimentally for the Kinetoplast DNA. Even more importantly, by simulating the digestion of the network by a restriction enzyme, we show that the distribution of oligomers, i.e. structures formed by a few loops which remain linked after digestion, quantitatively matches experimental data obtained from gel electrophoresis, provided that the density is, once again, close to the percolation transition. With respect to previous work, our analysis builds on a reduced number of assumptions, yet can still fully explain the experimental data. Our findings suggest that the Kinetoplast DNA can be viewed as a network of linked loops positioned very close to the percolation transition, and we discuss the possible biological implications of this remarkable fact.

  3. PIPELINES AS COMMUNICATION NETWORK LINKS

    SciTech Connect (OSTI)

    Kelvin T. Erickson; Ann Miller; E. Keith Stanek; C.H. Wu; Shari Dunn-Norman

    2005-03-14

    This report presents the results of an investigation into two methods of using the natural gas pipeline as a communication medium. The work addressed the need to develop secure system monitoring and control techniques between the field and control centers and to robotic devices in the pipeline. In the first method, the pipeline was treated as a microwave waveguide. In the second method, the pipe was treated as a leaky feeder or a multi-ground neutral and the signal was directly injected onto the metal pipe. These methods were tested on existing pipeline loops at UMR and Batelle. The results reported in this report indicate the feasibility of both methods. In addition, a few suitable communication link protocols for this network were analyzed.

  4. Tobacco mosaic virus: A biological building block for micro/nano...

    Office of Scientific and Technical Information (OSTI)

    Tobacco mosaic virus: A biological building block for micronanobio systems Citation Details In-Document Search Title: Tobacco mosaic virus: A biological building block for micro...

  5. Biology & Biomedical Sciences ACADEMIC PROGRAM

    E-Print Network [OSTI]

    Gereau, Robert W. IV

    Biology & Biomedical Sciences ACADEMIC PROGRAM GUIDELINES Programs in Cell & Molecular Biology Developmental, Regenerative and Stem Cell Biology Molecular Cell Biology Molecular Genetics & Genomics Molecular Microbiology & Microbial Pathogenesis #12;PAGE 2 GUIDELINES TO THE PROGRAMS IN CELL AND MOLECULAR BIOLOGY

  6. Chemistry meets biology in colitis-associated carcinogenesis

    E-Print Network [OSTI]

    Mangerich, Aswin

    The intestine comprises an exceptional venue for a dynamic and complex interplay of numerous chemical and biological processes. Here, multiple chemical and biological systems, including the intestinal tissue itself, its ...

  7. The living commons : a spatial theory for biological design

    E-Print Network [OSTI]

    Telhan, Orkan

    2013-01-01

    Biological design is as ancient as human civilization. For thousands of years, living systems and natural processes have been manipulated by humans and their biological outcomes have been customized for different purposes. ...

  8. Boston University Physics Colloquium Microscale propulsion in biological and

    E-Print Network [OSTI]

    Mohanty, Raj

    Boston University Physics Colloquium Microscale propulsion in biological and engineered systems biological locomotion and engineered propulsion. In the first example, we examine swimming microorganisms the microstructure. In the second example, we examine engineered magnetic artificial microswimmers which can

  9. Controlling Across Complex Networks Emerging links between networks and control

    E-Print Network [OSTI]

    , and Electrical Engineering University of New Mexico, Albuquerque NM 87131. Sandia National Laboratories communication network infrastructure into our designs; for example, we now consider the impact of link capacity as biology, computer science, physics, and social science. In such a context, networks provide a principled

  10. Thermodynamics and Relativity: Possible Consequences of their Close Link

    E-Print Network [OSTI]

    Jean-Louis Tane

    2008-05-25

    The first part of this paper is a summary of a hypothesis previously advanced, suggesting the existence of a close link between thermodynamics and relativity. The second part is a preliminary comment about some possible consequences in the fields of physics, astronomy and biology.

  11. Soft switched high frequency ac-link converter 

    E-Print Network [OSTI]

    Balakrishnan, Anand Kumar

    2009-05-15

    Variable frequency drives typically have employed dc voltage or current links for power distribution between the input and output converters and as a means to temporarily store energy. The dc link based power conversion systems have several inherent...

  12. Office of Biological and Environmental Research

    E-Print Network [OSTI]

    levels) ·Research Programs - Climate and Earth System Modeling (~$78) - Atmospheric Systems Research-scale, long-term field studies Process modeling with ties to earth- system models Funding to universities Sciences Fusion Energy Sciences Advanced Scientific Computing Research Nuclear Physics Biological Systems

  13. Mathematical Biology 3 Jurgen Jost

    E-Print Network [OSTI]

    Arnold, Anton

    Mathematical Biology 3 J¨urgen Jost Max Planck Institute for Mathematics in the Sciences Leipzig, Germany Mathematical Biology 3 ­ p. 1 #12;Biological networks In biology, we find many examples of interacting elements: Mathematical Biology 3 ­ p. 2 #12;Biological networks In biology, we find many examples

  14. Commercial Fisheries Biological Laboratory

    E-Print Network [OSTI]

    Bureau of Commercial Fisheries Biological Laboratory Oxford, Maryland #12;Chart of the Tred Avon River, showing the location of the BCF Biological Laboratory and the orientation of this area modern laboratories for chem- ical, histological, microbiological, and physiological re- search

  15. Chemistry & Biology Brief Communication

    E-Print Network [OSTI]

    Zhao, Huimin

    Chemistry & Biology Brief Communication Cloning, IL 61801, USA 3Department of Chemistry 4Department of Chemical and Biomolecular Engineering

  16. Links

    Broader source: Energy.gov [DOE]

    More Legal Research ResourcesEnergy Law NetLegal Citation Style GuideNuclear Regulatory LegislationOpen CRSPublic Library of LawTreatiesU.S. Code Classification TablesU.S. Congressional Documents...

  17. Computational Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Computational Biology SHARE Computational Biology Computational Biology research encompasses many important aspects including molecular biophysics for bio-energy, genetic level...

  18. A Central Theory of Biology

    E-Print Network [OSTI]

    Torday, JS

    2015-01-01

    JS, Rehan VK. Evolutionary biology, cell–cell communication6] Torday JS. Evolutionary Biology Redux. Pers Biol Med 56,explanations in evolutionary biology. Hist Philos Life Sci

  19. Todd Newberry: Professor of Biology

    E-Print Network [OSTI]

    Newberry, Andrew Todd; Jarrell, Randall; Regional History Project, UCSC Library

    2006-01-01

    Todd Newberry, Professor of Biology: Cowell College page 12Jarrell: Why’s that? Todd Newberry, Professor of Biology:Biology Board page 14 Newberry: Well, besides the

  20. HARVARD UNIVERSITY CHEMICAL BIOLOGY

    E-Print Network [OSTI]

    Church, George M.

    HARVARD UNIVERSITY CHEMICAL BIOLOGY PHD PROGRAM 2013-2014 Student Handbook #12;Program Contacts at the beginning of each semester. Laboratory Rotations Students in the Chemical Biology Program are expected an interest in having Chemical Biology Program Students in their labs. Students may rotate in the labs

  1. BIOLOGY SEMINAR PROMOTION LECTURE

    E-Print Network [OSTI]

    Shlizerman, Eli

    BIOLOGY SEMINAR PROMOTION LECTURE 12:00 PM SEMINAR HITCHCOCK HALL 132 REFRESHMENTS SERVED IN FOYER, November 24, 2014 "Life is flux" Dr. Jennifer Nemhauser Associate Professor Department of Biology drawn from molecular genetics, genomics, physiology and synthetic biology to build new tools to study

  2. Synthetic approaches to understanding biological constraints

    E-Print Network [OSTI]

    Velenich, Andrea

    Microbes can be readily cultured and their genomes can be easily manipulated. For these reasons, laboratory systems of unicellular organisms are increasingly used to develop and test theories about biological constraints, ...

  3. Artificial ciliary bundles with nano fiber tip links

    E-Print Network [OSTI]

    Asadnia, Mohsen; Miao, Jianmin; Triantafyllou, Michael

    2015-01-01

    Mechanosensory ciliary bundles in fishes are the inspiration for carefully engineered artificial flow sensors. We report the development of a new class of ultrasensitive MEMS flow sensors that mimic the intricate morphology of the ciliary bundles, including the stereocilia, tip links, and the cupula, and thereby achieve threshold detection limits that match the biological example. An artificial ciliary bundle is achieved by fabricating closely-spaced arrays of polymer micro-pillars with gradiating heights. Tip links that form the fundamental sensing elements are realized through electrospinning aligned PVDF piezoelectric nano-fibers that link the distal tips of the polymer cilia. An optimized synthesis of hyaluronic acid-methacrylic anhydride hydrogel that results in properties close to the biological cupula, together with drop-casting method are used to form the artificial cupula that encapsulates the ciliary bundle. In testing, fluid drag force causes the ciliary bundle to slide, stretching the flexible nan...

  4. Introduction to the Use of Link Analysis

    E-Print Network [OSTI]

    Kunkle, Tom

    Introduction to the Use of Link Analysis by Web Search Engines Amy Langville Carl Meyer Department 1960s Salton's SMART system 1989 Berner-Lee's WWW #12;the pre-1998 Web Yahoo · hierarchies of sites about Web Search Today · "It's not my homepage, but it might as well be. I use it to ego-surf. I use

  5. Related Links | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on Delicious Rank EERE: Alternative FuelsofProgram: Report Appendices |ProjectKnowRedoxRelated Links Related Links Since

  6. BIOLOGY, B.S. WITH TEACHER CERTIFICATE Biology (BIOT)

    E-Print Network [OSTI]

    Hamburger, Peter

    BIOLOGY, B.S. WITH TEACHER CERTIFICATE Biology (BIOT) (Fall 2015-Summer 2016) IPFW Residency/Gen Ed Biology BS Core/Supporting Courses (64 credits) *Note: 3.0 GPA required in Biology Core 21800 Genetics & Molecular Biology ______ 4 BIOL 21900 Principles of Functional Biology ______ 3 BIOL

  7. Biological Safety | Department of Energy

    Broader source: Energy.gov (indexed) [DOE]

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of Natural GasAdjustmentsShirleyEnergyTher i n c i p a l De p uBUSEnergy||slideshow explains theVersatileBiological

  8. Balanced link for dry coal extrusion pumps

    DOE Patents [OSTI]

    Bebejian, Maral

    2013-10-22

    A link which defines a link body that includes a multiple of link plates integral with a link body, the link body disposed at least partially forward of a forward edge of the multiple of link plates.

  9. Applications of microfluidics in chemical biology Douglas B Weibel1

    E-Print Network [OSTI]

    Prentiss, Mara

    Applications of microfluidics in chemical biology Douglas B Weibel1 and George M Whitesides2 This review discusses the application of microfluidics in chemical biology. It aims to introduce the reader to microfluidics, describe characteristics of microfluidic systems that are useful in studying chemical biology

  10. The Climate Impacts LINK Project

    E-Print Network [OSTI]

    Feigon, Brooke

    The Climate Impacts LINK Project The Climatic Research Unit, University of East Anglia Funded by the UK Department of the Environment, Transport and the Regions, Contract Ref EPG 1/1/68 The Climate Impacts LINK Project: Applying Results from the Hadley Centre's Climate Change Experiments for Climate

  11. Invasion Biology Mark A. Davis

    E-Print Network [OSTI]

    Davis, Mark A.

    Invasion Biology Mark A. Davis 2 biology 2 MarkA.DavisInvasionBiology2 1 With the exception of climate change, biological invasions have probably received more attention during the past ten years than on the subject, Invasion Biology provides a comprehensive and up-to-date review of the science of biological

  12. Reversibly immobilized biological materials in monolayer films on electrodes

    DOE Patents [OSTI]

    Weaver, P.F.; Frank, A.J.

    1993-05-04

    Methods and techniques are described for reversibly binding charged biological particles in a fluid medium to an electrode surface. The methods are useful in a variety of applications. The biological materials may include microbes, proteins, and viruses. The electrode surface may consist of reversibly electroactive materials such as polyvinylferrocene, silicon-linked ferrocene or quinone.

  13. Reversibly immobilized biological materials in monolayer films on electrodes

    DOE Patents [OSTI]

    Weaver, Paul F. (Golden, CO); Frank, Arthur J. (Lakewood, CO)

    1993-01-01

    Methods and techniques are described for reversibly binding charged biological particles in a fluid medium to an electrode surface. The methods are useful in a variety of applications. The biological materials may include microbes, proteins, and viruses. The electrode surface may consist of reversibly electroactive materials such as polyvinylferrocene, silicon-linked ferrocene or quinone.

  14. Technoeconomic Boundary Analysis of Biological Pathways to Hydrogen Production

    Fuel Cell Technologies Publication and Product Library (EERE)

    Report documenting the biological and engineering characteristics of five algal and bacterial hydrogen production systems selected by DOE and NREL for evaluation.

  15. Technoeconomic Boundary Analysis of Biological Pathways to Hydrogen Production

    SciTech Connect (OSTI)

    James, B. D.; Baum, G. N.; Perez, J.; Baum, K. N.

    2009-09-01

    Report documenting the biological and engineering characteristics of five algal and bacterial hydrogen production systems selected by DOE and NREL for evaluation.

  16. March 2014 Most Viewed Documents for Biology And Medicine | OSTI...

    Office of Scientific and Technical Information (OSTI)

    4 Most Viewed Documents for Biology And Medicine Science Subject Feed Carbon Dioxide Sequestering Using Microalgal Systems Daniel J. Stepan; Richard E. Shockey; Thomas A. Moe; Ryan...

  17. July 2013 Most Viewed Documents for Biology And Medicine | OSTI...

    Office of Scientific and Technical Information (OSTI)

    July 2013 Most Viewed Documents for Biology And Medicine Science Subject Feed Carbon Dioxide Sequestering Using Microalgal Systems Daniel J. Stepan; Richard E. Shockey; Thomas A....

  18. Biological detector and method

    DOE Patents [OSTI]

    Sillerud, Laurel; Alam, Todd M; McDowell, Andrew F

    2014-04-15

    A biological detector includes a conduit for receiving a fluid containing one or more magnetic nanoparticle-labeled, biological objects to be detected and one or more permanent magnets or electromagnet for establishing a low magnetic field in which the conduit is disposed. A microcoil is disposed proximate the conduit for energization at a frequency that permits detection by NMR spectroscopy of whether the one or more magnetically-labeled biological objects is/are present in the fluid.

  19. Biological detector and method

    DOE Patents [OSTI]

    Sillerud, Laurel; Alam, Todd M; McDowell, Andrew F

    2013-02-26

    A biological detector includes a conduit for receiving a fluid containing one or more magnetic nanoparticle-labeled, biological objects to be detected and one or more permanent magnets or electromagnet for establishing a low magnetic field in which the conduit is disposed. A microcoil is disposed proximate the conduit for energization at a frequency that permits detection by NMR spectroscopy of whether the one or more magnetically-labeled biological objects is/are present in the fluid.

  20. RELATED LINKS Photos: Solar & Wind

    E-Print Network [OSTI]

    RELATED LINKS Photos: Solar & Wind Power for the Home Photos: Energy Efficiency for the Home Photos of Architects (AIA) Home Design Trends Survey for the second quarter of 2009 that focused on emerging home

  1. Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Atmospheric Sciences Materials Science and Engineering Mathematics Physics Environment Safety and Health More Science Home | Science & Discovery | More Science | Biology SHARE...

  2. Related Links | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on Delicious Rank EERE: Alternative Fuels Data CenterFinancialInvesting inServicesRecovery Act » RecoveryRelated Links

  3. Micro/nanofabricated environments for synthetic biology

    SciTech Connect (OSTI)

    Collier, Pat [ORNL; Simpson, Michael L [ORNL

    2011-01-01

    A better understanding of how confinement, crowding and reduced dimensionality modulate reactivity and reaction dynamics will aid in the rational and systematic discovery of functionality in complex biological systems. Artificial micro- and nanofabricated structures have helped elucidate the effects of nanoscale spatial confinement and segregation on biological behavior, particularly when integrated with microfluidics, through precise control in both space and time of diffusible signals and binding interactions. Examples of nanostructured interfaces for synthetic biology include the development of cell-like compartments for encapsulating biochemical reactions, nanostructured environments for fundamental studies of diffusion, molecular transport and biochemical reaction kinetics, and regulation of biomolecular interactions as functions of micro- and nanofabricated topological constraints.

  4. BACHELOR OF SCIENCE BIOLOGY ECOLOGY & EVOLUTIONARY BIOLOGY OPTION

    E-Print Network [OSTI]

    Kemp, Brian M.

    BACHELOR OF SCIENCE ­ BIOLOGY ECOLOGY & EVOLUTIONARY BIOLOGY OPTION A Bachelor of Science degree hours must be upper division coursework. A B.S. in Biology requires a minimum of 19 semester hours of core BIOLOGY courses (BIOLOGY 106, 107, 301, 372 and 405 or 403). An additional 21 semester hours

  5. Biology and Marine Biology Research Areas and Assistantship Application

    E-Print Network [OSTI]

    Olszewski Jr., Edward A.

    1 Biology and Marine Biology Research Areas and Assistantship Application Name: LAST FIRST MIDDLE and Marine Biology faculty members will accept graduate students to work in the general research areas listed Next Page Revised 3/08 850 #12;2 Biology and Marine Biology Statement of Interest Statement of Interest

  6. Molecular Mechanism of Biological Proton Transport

    SciTech Connect (OSTI)

    Pomes, R.

    1998-09-01

    Proton transport across lipid membranes is a fundamental aspect of biological energy transduction (metabolism). This function is mediated by a Grotthuss mechanism involving proton hopping along hydrogen-bonded networks embedded in membrane-spanning proteins. Using molecular simulations, the authors have explored the structural, dynamic, and thermodynamic properties giving rise to long-range proton translocation in hydrogen-bonded networks involving water molecules, or water wires, which are emerging as ubiquitous H{sup +}-transport devices in biological systems.

  7. Integrated Biological Control

    SciTech Connect (OSTI)

    JOHNSON, A.R.

    2003-10-09

    Biological control is any activity taken to prevent, limit, clean up, or remediate potential environmental, health and safety, or workplace quality impacts from plants, animals, or microorganisms. At Hanford the principal emphasis of biological control is to prevent the transport of radioactive contamination by biological vectors (plants, animals, or microorganisms), and where necessary, control and clean up resulting contamination. Other aspects of biological control at Hanford include industrial weed control (e.g.; tumbleweeds), noxious weed control (invasive, non-native plant species), and pest control (undesirable animals such as rodents and stinging insects, and microorganisms such as molds that adversely affect the quality of the workplace environment). Biological control activities may be either preventive (a priori) or in response to existing contamination spread (a posteriori). Surveillance activities, including ground, vegetation, flying insect, and other surveys, and a priori control actions, such as herbicide spraying and placing biological barriers, are important in preventing radioactive contamination spread. If surveillance discovers that biological vectors have spread radioactive contamination, a posteriori control measures, such as fixing contamination, followed by cleanup and removal of the contamination to an approved disposal location are typical response functions. In some cases remediation following the contamination cleanup and removal is necessary. Biological control activities for industrial weeds, noxious weeds and pests have similar modes of prevention and response.

  8. Links - MST - UW Plasma Physics

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail.Theory ofDid you notHeat PumpsTechnologies |LibraryCenterCenterLinks Berkeley

  9. NREL: Energy Analysis - Related Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJessework usesof EnergyY-12 NationalNOHydrogenWebmasterRelated Links Here

  10. Links | National Nuclear Security Administration

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would likeUniverseIMPACTThousand CubicResourcelogo and-E C H2015TrayDevices - UsefulLinks

  11. Science Faculty Department of Biology

    E-Print Network [OSTI]

    Richner, Heinz

    Science Faculty Department of Biology Zoological Institute Community Ecology 1 December 2006 Hans-Sigrist-Symposium: Biological Invasions Hans-Sigrist-Stiftung 9.00 Prof. Dr. David M Richardson (Centre for Invasion Biology. Dr. Bruno Baur (Conservation Biology, Department of Integrative Biology, University of Basel

  12. RELATED LINKS Green Technology for

    E-Print Network [OSTI]

    , energy efficiency continues to be the primary factor driving the green building movement, squaring Congress considers how to encourage more energy-efficient construction, it must keep affordability in mindRELATED LINKS Green Technology for 2009: See the Photos Green Building: Getting Past the Media Hype

  13. Useful Weather Links Nolan Doesken

    E-Print Network [OSTI]

    Collett Jr., Jeffrey L.

    Useful Weather Links Nolan Doesken Odie Bliss Colorado Climate Center Presented at ProfessionalAgMet (Colorado Agricultural Meteorological Network) · http://www.coagmet.com Weather data for agriculture #12://www.hprcc.unl.edu/index.php #12;BLM / Forest Service Remote Automated Weather Stations ­ RAWS · http://www.fs.fed.us/raws/ #12

  14. Deflating Wireless Link Basem Shihada

    E-Print Network [OSTI]

    Shihada, Basem

    Deflating Wireless Link Buffers Basem Shihada CEMSE, KAUST #12;Computing and Networking Trends to as computer classes) form, evolve and may eventually die out. Ubiquitous high-speed wireless connectivity is a must. Dense, small-range wireless access points (AP) will become more important than today. Spectrum

  15. North Pacific Gyre Oscillation links ocean climate and ecosystem E. Di Lorenzo,1

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    North Pacific Gyre Oscillation links ocean climate and ecosystem change E. Di Lorenzo,1 N Pacific Gyre Oscillation links ocean climate and ecosystem change, Geophys. Res. Lett., 35, L08607, doi:10 to explain physical and biological fluctuations in the Northeast Pacific Ocean [Lynn et al., 1998; Lavaniegos

  16. Cross-linked structure of network evolution

    SciTech Connect (OSTI)

    Bassett, Danielle S.; Wymbs, Nicholas F.; Grafton, Scott T.; Porter, Mason A.; CABDyN Complexity Centre, University of Oxford, Oxford, OX1 1HP ; Mucha, Peter J.; Department of Applied Physical Sciences, University of North Carolina, Chapel Hill, North Carolina 27599

    2014-03-15

    We study the temporal co-variation of network co-evolution via the cross-link structure of networks, for which we take advantage of the formalism of hypergraphs to map cross-link structures back to network nodes. We investigate two sets of temporal network data in detail. In a network of coupled nonlinear oscillators, hyperedges that consist of network edges with temporally co-varying weights uncover the driving co-evolution patterns of edge weight dynamics both within and between oscillator communities. In the human brain, networks that represent temporal changes in brain activity during learning exhibit early co-evolution that then settles down with practice. Subsequent decreases in hyperedge size are consistent with emergence of an autonomous subgraph whose dynamics no longer depends on other parts of the network. Our results on real and synthetic networks give a poignant demonstration of the ability of cross-link structure to uncover unexpected co-evolution attributes in both real and synthetic dynamical systems. This, in turn, illustrates the utility of analyzing cross-links for investigating the structure of temporal networks.

  17. COLLEGE OF ENGINEERING Biological Engineering

    E-Print Network [OSTI]

    Walter, M.Todd

    COLLEGE OF ENGINEERING Biological Engineering Undergraduate Class of 2013 Post-Graduation Report The Department Biological and Environmental Engineering (BEE) offers a bachelor degree program in Biological Engineering and a bachelor degree program in Environmental Engineering. Cornell Career Services surveys

  18. Biological Conversion of Sugars To Hydrocarbons | Department...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Biological Conversion of Sugars To Hydrocarbons Biological Conversion of Sugars To Hydrocarbons PDF explaining the biological process of bioenergy Biological Conversion of Sugars...

  19. Related Links | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on Delicious RankADVANCED MANUFACTURINGEnergy BillsNo. 195 - Oct. 7,DOERTIRegulatory and Financial ReformRelated

  20. Related Links | Department of Energy

    Energy Savers [EERE]

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on DeliciousMathematicsEnergyInterested PartiesBuildingBudgetFinancial OpportunitiesofRegulatoryFiscal YearRelated

  1. Related Links | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on Delicious Rank EERE: Alternative FuelsofProgram: Report Appendices |ProjectKnowRedox

  2. Work with Biological Materials

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Work with Biological Materials Print Planning A complete Experiment Safety Sheet (ESS) is required before work can be done at the ALS. This ESS is either a part of the proposal...

  3. Lead exposures and biological responses in military weapons systems: Aerosol characteristics and acute lead effects among US Army artillerymen: Final report

    SciTech Connect (OSTI)

    Bhattacharyya, M.H.; Stebbings, J.H.; Peterson, D.P.; Johnson, S.A.; Kumar, R.; Goun, B.D.; Janssen, I.; Trier, J.E.

    1993-03-01

    This study was to determine the concentration and chemical nature of lead (Pb) aerosols produced during the firing of artillery and to determine the exposures and biological responses of crew members exposed to lead aerosols during such firing. The concentrations of lead-containing aerosols at crew positions depended on wind conditions, with higher concentrations when firing into a head wind. Aerosol concentrations were highest in the muzzle blast zone. Concentrations of lead in the blood of crew members rose during the first 12 days of exposure to elevated airborne lead concentrations and then leveled off. There was no rapid decrease in blood lead concentrations after completion of firing. Small decreases in hematocrit and small increases in free erythrocyte porphyrin were correlated with increasing exposure to airborne lead. These changes were reversed by seven weeks after firing. Changes in nerve conduction velocity had borderline statistical significance to airborne lead exposure. In measuring nerve conduction velocity, differences in skin temperature must be taken into account.

  4. Biological Hydrogen Production Workshop | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on Delicious Rank EERE: Alternative FuelsofProgram:Y-12Power, IncBio Centers Announcementand Fuel CellsBiological Hydrogen

  5. Biology Mathematics Connection Program Integrating Mathematics and Biology Program

    E-Print Network [OSTI]

    Biology Mathematics Connection Program Integrating Mathematics and Biology Program BMC pioneered a series of instructional modules for use in high school mathematics and biology classrooms to highlight the interconnections between the mathematical and biological sciences. IMB follows up by developing the BMC modules

  6. Marine Biology Is Marine Biology right for me?

    E-Print Network [OSTI]

    Martin, Ralph R.

    Marine Biology Is Marine Biology right for me? If you have an interest in learning about life in the sea then Marine Biology may be a good option for you. You will need good time management skills a marine biology degree are wide-ranging and provide a good basis for employment in almost any sector

  7. Stochastic Resonance: from climate to biology

    E-Print Network [OSTI]

    Roberto Benzi

    2007-02-05

    In this paper I will review some basic aspects of the mechanism of stochastic resonance. Stochastic resonance was first introduced as a possible mechanism to explain long term climatic variation. Since then, there have been many applications of stochastic resonance in physical and biological systems. I will show that in complex system, stochastic resonance can substantially change as a function of the ``system complexity''. Also, I will briefly mention how to apply stochastic resonance for the case of Brownian motors.

  8. AlumniLink: January 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D B L O O D S TAPropane Texas LawCaseforClass ofZoltán Alumni

  9. AlumniLink: July 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D B L O O D S TAPropane Texas LawCaseforClass ofZoltán Alumni

  10. AlumniLink: June 2014

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D B L O O D S TAPropane Texas LawCaseforClass ofZoltán Alumni

  11. AlumniLink: March 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D B L O O D S TAPropane Texas LawCaseforClass ofZoltán Alumni

  12. AlumniLink: May 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D B L O O D S TAPropane Texas LawCaseforClass ofZoltán Alumni

  13. AlumniLink: November 2014

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D B L O O D S TAPropane Texas LawCaseforClass ofZoltán Alumni

  14. AlumniLink: September 2014

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D B L O O D S TAPropane Texas LawCaseforClass ofZoltán Alumni

  15. AlumniLink: September 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D B L O O D S TAPropane Texas LawCaseforClass ofZoltán Alumni

  16. Biosafety Links | Argonne National Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D B L O OLaura|BilayerBiomimetic Dye Molecules for

  17. links | netl.doe.gov

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservationBio-Inspired SolarAboutXu Named|Got Solitons? S andia's JuanLearn more about

  18. TAMU Websites - Links - Cyclotron Institute

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservationBio-Inspired Solar Fuel Production 1:PhysicsSyndicated Contentwo2 TABLE OFTAMU

  19. Beryllium Related Links - Hanford Site

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAudits & InspectionsBeryllium and Chronic BerylliumProgramProgram

  20. Bisfuel links - Arizona State University

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAudits & InspectionsBerylliumBiomimetic Dye Molecules foresBird

  1. Bisfuel links - Department of Energy

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAudits & InspectionsBerylliumBiomimetic Dye Molecules foresBirdDepartment

  2. Bisfuel links - Solar energy news

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAudits & InspectionsBerylliumBiomimetic DyeResearch centersSeminarsSolar

  3. Related Links | Department of Energy

    Broader source: Energy.gov (indexed) [DOE]

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of Natural GasAdjustmentsShirleyEnergy AEnergyPresidentialThis 3-DMarch 9, 2015Watchdog |

  4. EIA - Related Links for Transportation

    Gasoline and Diesel Fuel Update (EIA)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of Natural GasAdjustments (Billion Cubic Feet) Wyoming963 1.969Central Region About U.S. Natural Gas

  5. Website Policies / Important Links | DOEpatents

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield Municipal GasAdministrationTechnicalTechnicalScience.gov App Find science

  6. Website Policies / Important Links | sciencecinema

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield Municipal GasAdministrationTechnicalTechnicalScience.gov App Find scienceWebsite Policies /

  7. Links | National Nuclear Security Administration

    National Nuclear Security Administration (NNSA)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield Municipal GasAdministration Medal01 Sandia NationalSecurityNuclearH-canyon |I 14/%2A1/%2AField

  8. Department of Energy Idaho - Links

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail.Theory ofDid you not find what you were looking for?DelegationsInside ID Inside

  9. Website Policies / Important Links | Geothermal

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power AdministrationRobust,Field-effectWorking WithTelecentricN AProject AssessmentWe Webcam for NewH-7 PadWebsite

  10. astro_links2.dvi

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power AdministrationRobust,Field-effectWorkingLos Alamos verifiesValidation ofUV-RSS SpectralGOESashleye1February

  11. LTS Related Links - Hanford Site

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would likeUniverseIMPACTThousand CubicResource andfirstDevice UW Madison Line

  12. Compiling & Linking | Argonne Leadership Computing Facility

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAuditsCluster Compatibilitydefault SignEnvironmentAprilCompiler System

  13. EEO Links | National Nuclear Security Administration

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would like submit theCovalentLaboratory |SectorforOXFORD ICP-DRIE SystemCareersr EEOLinks |

  14. Coding analysis of the IS-95A reverse link 

    E-Print Network [OSTI]

    Amin, Noor Rajib

    1999-01-01

    The IS-95A reverse link CDMA system is analyzed from a channel coding point of view. Analytical performance is derived for the Viterbi decoder to perform hard decision decoding. A dual-max decoding metric is suggested to ...

  15. Biology & Biomedical Sciences ACADEMIC PROGRAM

    E-Print Network [OSTI]

    Gereau, Robert W. IV

    Biology & Biomedical Sciences ACADEMIC PROGRAM GUIDELINES Programs in Cell & Molecular Biology Molecular Microbiology & Microbial Pathogenesis Overview of the Programs in Cell and Molecular Biology Graduate training in Cell and Molecular Biology at Washington University is offered by the Programs in Cell

  16. POSITION ANNOUNCEMENT Insect Molecular Biology

    E-Print Network [OSTI]

    Ishida, Yuko

    POSITION ANNOUNCEMENT Insect Molecular Biology 03/21/2014 POSITION: Research Associate LOCATION in entomology, biochemistry, molecular biology and/or toxicology; extensive research experience in entomology, biochemistry, cell biology and/or molecular biology; excellent organizational, and written and interpersonal

  17. Biological Macromolecular Structures Data from the RCSB Protein Data Bank (RCSB PDB)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    The Research Collaboratory for Structural Bioinformatics (RCSB) is a non-profit consortium that works to improve understanding of the function of biological systems through the study of the 3-D structure of biological macromolecules. The RCSB PDB is one of three sites serving as deposition, data processing, and distribution sites of the Protein Data Bank Archive. Each site provides its own view of the primary data, thus providing a variety of tools and resources for the global community. RCSB is also the official keeper for the PDB archive, with sole access authority to the PDB archive directory structure and contents. The RCSB PDB Information Portal for Biological Macromolecular Structures offers online tools for search and retrieval, for visualizing structures, for depositing, validating, or downloading data, news and highlights, a discussion forum, and links to other areas of related research. The PDB archive is a repository of atomic coordinates and other information describing proteins and other important biological macromolecules. Structural biologists use methods such as X-ray crystallography, NMR spectroscopy, and cryo-electron microscopy to determine the location of each atom relative to each other in the molecule. They then deposit this information, which is then annotated and publicly released into the archive by the wwPDB. Results can be viewed as 3-D images or models.

  18. Research in thermal biology: Burning questions for coldwater stream fishes

    SciTech Connect (OSTI)

    McCullough, Dr. Dale [University of California, Berkeley; Bartholow, Dr. John [U.S. Department of Fish and Wildlife; Jager, Yetta [ORNL; al., et. [Various Institutes

    2009-01-01

    With the increasing appreciation of global warming impacts on ecological systems in addition to the myriad of land management effects on water quality, the number of literature citations dealing with the effects of water temperature on freshwater fish has escalated in the past decade. Given the many biological scales at which water temperature effects have been studied and the growing need to integrate knowledge from multiple disciplines of thermal biology to fully protect beneficial uses, we held that a survey of the most promising recent developments and an expression of some of the remaining unanswered questions with significant management implications would best be approached collectively by a diverse research community. We have identified five specific topic areas of renewed research where new techniques and critical thought could benefit coldwater stream fishes (particularly salmonids): molecular, organism, population/species, community and ecosystem, and policy issues in water quality. Our hope is that information gained through examination of recent research fronts linking knowledge at various scales will prove useful in managing water quality at a basin level to protect fish populations and whole ecosystems. Standards of the past were based largely on incipient lethal and optimum growth rate temperatures for fish species, while future standards should consider all integrated thermal impacts to the organism and ecosystem.

  19. An improved understanding of fluorescent Zn(II) sensors and their uses in biological settings

    E-Print Network [OSTI]

    Wong, Brian Alexander

    2009-01-01

    Chapter 1. An Introduction to Fluorescent Zn(II) Sensors and Their Applications in Biological Systems This chapter opens with an overview of the numerous roles of zinc in biology, with an emphasis on labile Zn(II), that ...

  20. Characterization and Control of Biological Microrobots

    E-Print Network [OSTI]

    magnetic system is five orders-of-magnitude less than the propulsion force gener- ated by the flagellum proposed for propulsion: extracting energy from an ex- ternal magnetic field [4], or extracting energy from of Magnetotactic Bacterium (MTB) which can be considered as a biological microrobot. Magnetic dipole moment

  1. Exploring the Business Link Opportunity: Transmission & Clean...

    Office of Environmental Management (EM)

    Exploring the Business Link Opportunity: Transmission & Clean Energy Development in the West Exploring the Business Link Opportunity: Transmission & Clean Energy Development in the...

  2. Related Links | National Nuclear Security Administration

    National Nuclear Security Administration (NNSA)

    About Us Our Programs Defense Programs Future Science & Technology Programs Advanced Simulation and Computing and Institutional R&D Programs Related Links Related Links...

  3. ORIGINAL ARTICLES Behavior of Charged Particles in a Biological Cell

    E-Print Network [OSTI]

    Halgamuge, Malka N.

    form: September 29, 2010 Abstract Exposure to electromagnetic fields is a research area that has are vectors) in a magnetic field B is always perpendicular to v and B (Popp, 1994). The biological effects of electromagnetic fields (EMF) are limited by the position of the biological system with respect to the field

  4. Fish Biology Introduction

    E-Print Network [OSTI]

    Jochem, Frank J.

    Lab 10: Fish Biology Introduction The effective management of fish populations requires knowledge of the growth rate of the fish. This requires determination of the age of fish to develop a relationship between the size and age of fish. For an inventory, this information provides insights to evaluate the potential

  5. Chemistry & Biology Brief Communication

    E-Print Network [OSTI]

    Herschlag, Dan

    . In each of these cases the native hydroxyl group interacts with a purine exocy- clic amine. Our resultsChemistry & Biology Brief Communication 20 -Fluoro Substituents Can Mimic Native 20 -Hydroxyls signature for tertiary interac- tions between 20 -hydroxyl groups and exocyclic amino groups within RNA

  6. Chemistry & Biology Perspective

    E-Print Network [OSTI]

    Williams, Loren

    Chemistry & Biology Perspective The Origin of RNA and ``My Grandfather's Axe'' Nicholas V. Hud,1 *Correspondence: hud@gatech.edu http://dx.doi.org/10.1016/j.chembiol.2013.03.012 The origin of RNA is one

  7. Chemistry and Chemical Biology

    E-Print Network [OSTI]

    Linhardt, Robert J.

    /polymeric materials for electronics or energy storage, and polyelectrolyte membranes for fuel cell applications. http projects in emerging fields of science and technology that lie at the intersection between chemistry Biology at Rensselaer invites applications from students interested in pursuing a Ph.D. degree

  8. Biological Engineering 2014-2015 BIOLOGICAL ENGINEERING PROGRAM PROGRESS FORM

    E-Print Network [OSTI]

    Walter, M.Todd

    Biological Engineering 2014-2015 8 BIOLOGICAL ENGINEERING PROGRAM PROGRESS FORM Applies to students Calculus for Engineers I* MATH 1910 (4) ______ _____ _____ Calculus for Engineers II* MATH 1920 (4) ______ _____ _____ Engineering Math* (Differential Equations) MATH 2930 (4) ______ _____ _____ Engineering Math* (Linear Algebra

  9. A View to the FutureBERKELEY LAB 2005/2006 REPORT A Note from the Director / 2 Energy Technologies and Environmental Solutions / 4 Living Systems and Quantitative Biology / 8 Frontiers in Nanoscience / 12 Exploring Matter and Energy in the Universe / 16

    E-Print Network [OSTI]

    Knowles, David William

    A View to the FutureBERKELEY LAB 2005/2006 REPORT #12;A Note from the Director / 2 Energy Technologies and Environmental Solutions / 4 Living Systems and Quantitative Biology / 8 Frontiers in Nanoscience / 12 Exploring Matter and Energy in the Universe / 16 X-Ray and Ultrafast Science / 20 Advanced

  10. Biology 472 Spring 2009 Biology of Amphibians and Reptiles

    E-Print Network [OSTI]

    Jackson, Kate

    Biology 472 Spring 2009 1 Biology of Amphibians and Reptiles Dr. Kate Jackson Office: Science 200 E Encyclopedia of Reptiles and Amphibians. Oxford University Press. (2) Stebbins, R. and R. T. Peterson. 2003 of assorted herps (from labs). #12;Biology 472 Spring 2009 2 · ...know how to access primary sources

  11. Modular Information Hiding and Type-Safe Linking for C

    E-Print Network [OSTI]

    Hicks, Michael

    , CMOD, software reliability. Ç 1 INTRODUCTION MODULE systems allow large programs to be constructed from the reliability of software [32]. While full-featured module systems are part of many modern languages (such as MLModular Information Hiding and Type-Safe Linking for C Saurabh Srivastava, Student Member, IEEE

  12. NREL Reveals Links Among Climate Control, Battery Life,

    E-Print Network [OSTI]

    , but also auxiliary systems like heating and air conditioning. These climate-control loads can reduceNREL Reveals Links Among Climate Control, Battery Life, and Electric Vehicle Range Researchers the climate-control systems of plug-in electric vehicles and the distances these vehicles can travel

  13. BACHELOR OF SCIENCE BIOLOGY GENERAL OPTION

    E-Print Network [OSTI]

    Kemp, Brian M.

    * OR 201 Physics 4 hrs. PHYSICS 102* OR 202 Physics 4 hrs. General Biology Option Requirements: CellBACHELOR OF SCIENCE ­ BIOLOGY GENERAL OPTION A Bachelor of Science degree from Washington State Requirements: Grade BIOLOGY 106 General Biology 4 hrs. BIOLOGY 107 General Biology 4 hrs. BIOLOGY 301 General

  14. Modular architecture in biological networks

    E-Print Network [OSTI]

    Ramachandran, Gopal (Gopal Sebastian)

    2007-01-01

    In the past decade, biology has been revolutionized by an explosion in the availability of data. Translating this new wealth of information into meaningful biological insights and clinical breakthroughs will require a ...

  15. Feedstock Supply System Design and Economics for Conversion of Lignocellulosic Biomass to Hydrocarbon Fuels: Conversion Pathway: Biological Conversion of Sugars to Hydrocarbons The 2017 Design Case

    SciTech Connect (OSTI)

    Kevin Kenney; Kara G. Cafferty; Jacob J. Jacobson; Ian J Bonner; Garold L. Gresham; William A. Smith; David N. Thompson; Vicki S. Thompson; Jaya Shankar Tumuluru; Neal Yancey

    2013-09-01

    The U.S. Department of Energy promotes the production of a range of liquid fuels and fuel blendstocks from lignocellulosic biomass feedstocks by funding fundamental and applied research that advances the state of technology in biomass collection, conversion, and sustainability. As part of its involvement in this program, the Idaho National Laboratory (INL) investigates the feedstock logistics economics and sustainability of these fuels. Between 2000 and 2012, INL conducted a campaign to quantify the economics and sustainability of moving biomass from standing in the field or stand to the throat of the biomass conversion process. The goal of this program was to establish the current costs based on conventional equipment and processes, design improvements to the current system, and to mark annual improvements based on higher efficiencies or better designs. The 2012 programmatic target was to demonstrate a delivered biomass logistics cost of $35/dry ton. This goal was successfully achieved in 2012 by implementing field and process demonstration unit-scale data from harvest, collection, storage, preprocessing, handling, and transportation operations into INL’s biomass logistics model. Looking forward to 2017, the programmatic target is to supply biomass to the conversion facilities at a total cost of $80/dry ton and on specification with in-feed requirements. The goal of the 2017 Design Case is to enable expansion of biofuels production beyond highly productive resource areas by breaking the reliance of cost-competitive biofuel production on a single, abundant, low-cost feedstock. If this goal is not achieved, biofuel plants are destined to be small and/or clustered in select regions of the country that have a lock on low-cost feedstock. To put the 2017 cost target into perspective of past accomplishments of the cellulosic ethanol pathway, the $80 target encompasses total delivered feedstock cost, including both grower payment and logistics costs, while meeting all conversion in-feed quality targets. The 2012 $35 programmatic target included only logistics costs with a limited focus on biomass quality

  16. Environmental Biology | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    microbiology, biogeochemistry, molecular biology, molecular dynamics, bioinformatics, genomics, neutron science, chemistry, and computing-and spans multiple scales, from the...

  17. Abengoa Mojave Final Biological Opinion

    Broader source: Energy.gov [DOE]

    Biological Opinion on Mojave Solar, LLC's Mojave Solar Project, San Bernardino County, California (8-8-11-F-3)

  18. DBBS Alumni 1977 to 2011 Carl Parker, Ph.D. Molecular Biology Lab of Dr. Robert Roeder

    E-Print Network [OSTI]

    Gereau, Robert W. IV

    .D. Molecular Biology Lab of Dr. Rosalind R. Kornfeld David Cox, Ph.D. Evolutionary Biology and Ecology Lab. Valeriote Alfonso Gonzalez Noriega, Ph.D. Cellular, Developmental, & Systemic Biology Lab of Dr. William W. Barbara G. Pickard 1981 James Bartles, Ph.D. Molecular Biology Lab of Dr. William A. Frazier Stewart

  19. Biological particle identification apparatus

    DOE Patents [OSTI]

    Salzman, Gary C. (Los Alamos, NM); Gregg, Charles T. (Los Alamos, NM); Grace, W. Kevin (Los Alamos, NM); Hiebert, Richard D. (Los Alamos, NM)

    1989-01-01

    An apparatus and method for making multiparameter light scattering measurements from suspensions of biological particles is described. Fourteen of the sixteen Mueller matrix elements describing the particles under investigation can be substantially individually determined as a function of scattering angle and probing radiations wavelength, eight elements simultaneously for each of two apparatus configurations using an apparatus which incluees, in its simplest form, two polarization modulators each operating at a chosen frequency, one polarizer, a source of monochromatic electromagnetic radiation, a detector sensitive to the wavelength of radiation employed, eight phase-sensitive detectors, and appropriate electronics. A database of known biological particle suspensions can be assembled, and unknown samples can be quickly identified once measurements are performed on it according to the teachings of the subject invention, and a comparison is made with the database.

  20. Proportional Relationships in Biology

    E-Print Network [OSTI]

    Lega, Joceline

    Proportional Relationships in Biology #12;Bell Ringer... 1) Are 2/3 and 6/12 proportional? 1) No; 6/12 = 1/2 ! 2/3 2) Are 2/3 and 10/15 proportional? 1) Yes; 2/3 = (2*5)/(3*5) = 10/15 3) Are 2/3 and 4/9 proportional? 1) No; both are simplified #12;Proportional Shapes · What does it mean for two shapes