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We encourage you to perform a real-time search of NLEBeta
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1

Microbial Genomics Data from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer (OSTI)

As of March 2008, The Joint Genome Institute has released 296 Prokaryotic microbial sites, with 216 in finished status.

2

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot August 13, 2012 -...

3

Joint Genome Institute (JGI) Projects at NERSC  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Genome Institute Joint Genome Institute (JGI) Joint Genome Institute (JGI) nicole-illumina-flowcell.jpg Key Challenges: Ensuring that there is a robust computational infrastructure for managing, storing and gleaning scientific insights from the torrent of data that constantly flows from the advanced sequencing platforms at the Department of Energy Joint Genome Institute (JGI). JGI sequencing capacity exceeds 40 billion DNA base pairs per year and is growing at a rate that exceeds computer hardware improvements, with exponential increases in computation and storage needed. JGI will generate about 1 petabyte of data in their first year as a NERSC partner; this is expected to double each year. Why it Matters: JGI is the primary production sequencing facility for the DOE. By revealing the genetic blueprint and fundamental principles that

4

The US Department of Energy Joint Genome Institute Microbial Genome Program  

E-Print Network (OSTI)

Institute A typical genome sequencing project AssemblyInstitute A typical genome sequencing project AssemblyJGI Microbial Sequencing US DOE Joint Genome Institute JGI

Lapidus, Alla

2005-01-01T23:59:59.000Z

5

DOE Joint Genome Institute: JGI's Susannah Tringe Receives Prestigious...  

NLE Websites -- All DOE Office Websites (Extended Search)

Energy (DOE) Office of Science Early Career Research Program has awarded a grant to DOE Joint Genome Institute scientist Susannah Green Tringe to conduct genomic studies of...

6

DOE Joint Genome Institute Completes Soybean Genome- Data Released to  

NLE Websites -- All DOE Office Websites (Extended Search)

Press Release: December 8, 2008 Press Release: December 8, 2008 DOE Joint Genome Institute Completes Soybean Genome- Data Released to Advance Biofuel, Food, & Feed Research WALNUT CREEK, CA- The U.S. Department of Energy Joint Genome Institute (DOE JGI) has released a complete draft assembly of the soybean (Glycine max) genetic code, making it widely available to the research community to advance new breeding strategies for one of the world's most valuable plant commodities. Soybean not only accounts for 70 percent of the world's edible protein, but also is an emerging feedstock for biodiesel production. Soybean is second only to corn as an agricultural commodity and is the leading U.S. agricultural export. DOE JGI's interest in sequencing the soybean centers on its use for biodiesel, a renewable, alternative fuel with the highest energy content of

7

DOE Joint Genome Institute: IMG ER Goes Primetime: Provides Expert...  

NLE Websites -- All DOE Office Websites (Extended Search)

that regulate our environment. Scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Biological Data Management and Technology Center...

8

Joint Genome Institute Progress Report 2002-2005  

SciTech Connect

Progress report covering activities at the DOE-Joint Genome Institute in Walnut Creek, California for the period 2002-2005.

Gilbert, David

2005-10-03T23:59:59.000Z

9

DOE Joint Genome Institute: Opening New Frontiers: First Volume...  

NLE Websites -- All DOE Office Websites (Extended Search)

in the spirit of his goal of providing "light to the obscure," the Department of Energy Joint Genome Institute (DOE JGI) has published the initial "volume" of the Genomic...

10

DOE Joint Genome Institute: Unraveling the Threads: Simplest cotton genome  

NLE Websites -- All DOE Office Websites (Extended Search)

December 19, 2012 December 19, 2012 Unraveling the Threads: Simplest cotton genome offers clues for fiber improvements From the stockings decorating mantles to the new outfits in display windows calling to shoppers, cotton is woven into the fabric of the holiday season. For bioenergy researchers, however, fiber composition matters more than color and texture as each cotton strand is composed of more than two dozen coils of cellulose, a target biomass for next-generation biofuels. In the December 20, 2012 edition of Nature, an international consortium of researchers from 31 institutions including a team from the U.S. Department of Energy Joint Genome Institute (DOE JGI) present a high-quality draft assembly of the simplest cotton (Gossypium raimondii) genome. Additionally,

11

DOE Joint Genome Institute: Soybean Genome Analysis Reveals Pathways for  

NLE Websites -- All DOE Office Websites (Extended Search)

January 13, 2010 January 13, 2010 Soybean Genome Analysis Reveals Pathways for Improving Biodiesel, Disease Resistance, and Reducing Waste Runoff WALNUT CREEK, CA-Soybean, one of the most important global sources of protein and oil, is now the first legume species with a published complete draft genome sequence. The sequence and its analysis appear in the January 14 edition of the journal Nature. The research team comprised 18 institutions, including the U.S. Department of Energy Joint Genome Institute (DOE JGI), the U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS), Purdue University and the University of North Carolina at Charlotte. The DOE, National Science Foundation, USDA and United Soybean Board supported the research. helix made of soybeans

12

DOE Joint Genome Institute 2008 Progress Report  

Science Conference Proceedings (OSTI)

While initially a virtual institute, the driving force behind the creation of the DOE Joint Genome Institute in Walnut Creek, California in the Fall of 1999 was the Department of Energy's commitment to sequencing the human genome. With the publication in 2004 of a trio of manuscripts describing the finished 'DOE Human Chromosomes', the Institute successfully completed its human genome mission. In the time between the creation of the Department of Energy Joint Genome Institute (DOE JGI) and completion of the Human Genome Project, sequencing and its role in biology spread to fields extending far beyond what could be imagined when the Human Genome Project first began. Accordingly, the targets of the DOE JGI's sequencing activities changed, moving from a single human genome to the genomes of large numbers of microbes, plants, and other organisms, and the community of users of DOE JGI data similarly expanded and diversified. Transitioning into operating as a user facility, the DOE JGI modeled itself after other DOE user facilities, such as synchrotron light sources and supercomputer facilities, empowering the science of large numbers of investigators working in areas of relevance to energy and the environment. The JGI's approach to being a user facility is based on the concept that by focusing state-of-the-art sequencing and analysis capabilities on the best peer-reviewed ideas drawn from a broad community of scientists, the DOE JGI will effectively encourage creative approaches to DOE mission areas and produce important science. This clearly has occurred, only partially reflected in the fact that the DOE JGI has played a major role in more than 45 papers published in just the past three years alone in Nature and Science. The involvement of a large and engaged community of users working on important problems has helped maximize the impact of JGI science. A seismic technological change is presently underway at the JGI. The Sanger capillary-based sequencing process that dominated how sequencing was done in the last decade is being replaced by a variety of new processes and sequencing instruments. The JGI, with an increasing number of next-generation sequencers, whose throughput is 100- to 1,000-fold greater than the Sanger capillary-based sequencers, is increasingly focused in new directions on projects of scale and complexity not previously attempted. These new directions for the JGI come, in part, from the 2008 National Research Council report on the goals of the National Plant Genome Initiative as well as the 2007 National Research Council report on the New Science of Metagenomics. Both reports outline a crucial need for systematic large-scale surveys of the plant and microbial components of the biosphere as well as an increasing need for large-scale analysis capabilities to meet the challenge of converting sequence data into knowledge. The JGI is extensively discussed in both reports as vital to progress in these fields of major national interest. JGI's future plan for plants and microbes includes a systematic approach for investigation of these organisms at a scale requiring the special capabilities of the JGI to generate, manage, and analyze the datasets. JGI will generate and provide not only community access to these plant and microbial datasets, but also the tools for analyzing them. These activities will produce essential knowledge that will be needed if we are to be able to respond to the world's energy and environmental challenges. As the JGI Plant and Microbial programs advance, the JGI as a user facility is also evolving. The Institute has been highly successful in bending its technical and analytical skills to help users solve large complex problems of major importance, and that effort will continue unabated. The JGI will increasingly move from a central focus on 'one-off' user projects coming from small user communities to much larger scale projects driven by systematic and problem-focused approaches to selection of sequencing targets. Entire communities of scientists working in a particular field, such as feeds

Gilbert, David

2009-03-12T23:59:59.000Z

13

DOE Joint Genome Institute: New Genomic Model Defines Microbes by  

NLE Websites -- All DOE Office Websites (Extended Search)

September 8, 2009 September 8, 2009 New Genomic Model Defines Microbes by Diet-Provides Tool for Tracking Environmental Change WALNUT CREEK, CA-In line with the U.S. Department of Energy (DOE) interest in characterizing the biotic factors involved in global carbon cycling, the DOE Joint Genome Institute (JGI) characterizes a diverse array of plants, microorganisms, and the communities in which they reside to inform options for reducing and stabilizing atmospheric greenhouse gases. Through a novel genomic approach detailed in the September 7 online edition and on the cover September 14 of the journal Proceedings of the National Academy of Sciences, an international team of scientists led by the University of New South Wales and the DOE JGI demonstrates how the microbial diversity of the oceans can be analyzed without necessarily

14

DOE Joint Genome Institute: Genome of Simplest Animal Reveals Ancient  

NLE Websites -- All DOE Office Websites (Extended Search)

21, 2008 21, 2008 Genome of Simplest Animal Reveals Ancient Lineage, Confounding Array of Complex Capabilities WALNUT CREEK, CA-As Aesop said, appearances are deceiving-even in life's tiniest critters. From first detection in the 1880s, clinging to the sides of an aquarium, to its recent characterization by the U.S. Department of Energy Joint Genome Institute (DOE JGI), a simple and primitive animal, Trichoplax adhaerens, appears to harbor a far more complex suite of capabilities than meets the eye. The findings, reported in the August 21 online edition of the journal Nature, establish a group of organisms as a branching point of animal evolution and identify sets of genes, or a "parts list," employed by organisms that have evolved along particular branches.

15

DOE Joint Genome Institute: Trillions Served: Massive, Complex...  

NLE Websites -- All DOE Office Websites (Extended Search)

the number of burgers served has eclipsed the billion mark, while the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) will now serve up trillions of nucleotides of...

16

DOE Joint Genome Institute: Preparing for a Thaw: How Arctic...  

NLE Websites -- All DOE Office Websites (Extended Search)

Research) To answer this question, researchers from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), the Earth Sciences Division (ESD) within Berkeley Lab, and the...

17

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Martinez, D. , et al. Genome sequencing and analysis of thegroup, the HudsonAlpha Genome Sequencing Center, will expandnext-genera- tion genome sequencing and add capabilities to

Gilbert, David

2009-01-01T23:59:59.000Z

18

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot August 13, 2012 - 2:33pm Addthis By developing a better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for them in times of drought. By developing a better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for them in times of drought. Charles Rousseaux Charles Rousseaux Senior Writer, Office of Science What Is A Weed It's also known as a mouse-ear cress. The scientific name is Arababidopsis thaliana.

19

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

biofuel production. Diatom Genome Helps Explain Their Success in Capturing Carbon Diatoms, mighty microscopic algae,

Gilbert, David

2009-01-01T23:59:59.000Z

20

DOE Joint Genome Institute: JGI & NERSC Partner for GenomicHigh...  

NLE Websites -- All DOE Office Websites (Extended Search)

April 12, 2010 JGI & NERSC Partner for Genomic High-performance Computing WALNUT CREEK, CA-The Department of Energy Joint Genome Institute (JGI) and the National Energy Research...

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


21

Illumina Production Sequencing at the DOE Joint Genome Institute - Workflow and Optimizations  

E-Print Network (OSTI)

Production Sequencing at DOE Joint Genome Institute –U.S. Department of Energy (DOE) Joint Genome Institute’s (DNA sequence to support the DOE mission areas of renewable

Tarver, Angela

2010-01-01T23:59:59.000Z

22

Today, DOE's Joint Genome Institute (a  

NLE Websites -- All DOE Office Websites (Extended Search)

characterizing the basic principles and relationships underlying living systems. Social Impact: Armed with the DNA sequence of the human genome, scientists will be able to...

23

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

proteins for biofuel production. Trends in Mi- crobiology,could help improve biofuel production. Diatom Genome Helpsa key target. Current biofuel production meth- ods, such as

Gilbert, David

2009-01-01T23:59:59.000Z

24

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Paterson, A. , et al. The Sorghum bicolor genome and thethe 730-million nucleotide Sorghum bicolor sequence, and thesoybean, eucalyp- tus, sorghum, foxtail millet, cassava,

Gilbert, David

2009-01-01T23:59:59.000Z

25

DOE Joint Genome Institute: Biofuel-Producing Bacteria, Insect Gut  

NLE Websites -- All DOE Office Websites (Extended Search)

June 29, 2009 June 29, 2009 Biofuel-Producing Bacteria, Insect Gut Microbes, ~ 70 other Projects Fill DOE Joint Genome Institute 2010 Pipeline WALNUT CREEK, CA-The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has selected 71 new genomic sequencing projects for its 2010 Community Sequencing Program (CSP)-a targeted sampling of the planet's biodiversity-to be characterized for bioenergy, climate, and environmental applications. JGI's Community Sequencing Program is the largest genomic sequencing effort in the world focused on nonmedical organisms, enabling scientists from universities and national laboratories to probe the hidden world of microbes and plants to tap nature's ingenuity for innovative solutions to the nation's major challenges in energy, climate, and environment. The

26

Seventh Annual DOE Joint Genome Institute User Meeting Sponsored By  

NLE Websites -- All DOE Office Websites (Extended Search)

Seventh Annual Seventh Annual DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 20-22, 2012 Walnut Creek Marriott Walnut Creek, California Contents Speaker Presentations .......................................................................................................... 1 Poster Presentations ........................................................................................................... 13 Attendees ............................................................................................................................ 83 Author Index ....................................................................................................................... 89 Abstracts alphabetical by speaker

27

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Genomics of cellulosic biofuels. Nature, 454 (7206):841-845,2008 Termite Bellies and Biofuels (Published in Smithsonian,in the quest for viable biofuels. An estimated 10,000 marine

Gilbert, David

2009-01-01T23:59:59.000Z

28

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

National Labora- tory (PNNL), and the HudsonAlpha InstituteLand JGI Paci?c Northwest National Laboratory (PNNL) Since2004, PNNL has collaborated with DOE JGI in the area of

Gilbert, David

2009-01-01T23:59:59.000Z

29

DOE Joint Genome Institute: Scientists Publish Complete Genetic Blueprint  

NLE Websites -- All DOE Office Websites (Extended Search)

January 28, 2009 January 28, 2009 Scientists Publish Complete Genetic Blueprint of Key Biofuels Crop WALNUT CREEK, CA-Scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and several partner institutions have published the sequence and analysis of the complete genome of sorghum, a major food and fodder plant with high potential as a bioenergy crop. The genome data will aid scientists in optimizing sorghum and other crops not only for food and fodder use, but also for biofuels production. The comparative analysis of the sorghum genome appears in the January 29 edition of the journal Nature. Prized for its drought resistance and high productivity, sorghum is currently the second most prevalent biofuels crop in the United States, behind corn. Grain sorghum produces the same amount of ethanol per bushel

30

DOE Joint Genome Institute: DOE JGI Releases Expanded Version of  

NLE Websites -- All DOE Office Websites (Extended Search)

28, 2009 28, 2009 DOE JGI Releases Expanded Version of Phytozome.net: Clearinghouse for Comparative Plant Genomics Data WALNUT CREEK, CA-An enhanced version of Phytozome.net, a web portal for comparative plant genomics geared to advance biofuel, food, feed, and fiber research, has been released by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). Phytozome provides a central "hub" for web access to a rapidly growing number of plant genomes, and includes tools for visualization of plant genomes and associated annotations, sequence analysis, and bulk, as well as targeted, plant data retrieval. The gene families available in Phytozome, defined at several evolutionarily significant epochs, provide a framework for the transfer of functional information to important biofuel and

31

DOE Joint Genome Institute: DNA of Uncultured Organisms Sequenced Using  

NLE Websites -- All DOE Office Websites (Extended Search)

21, 2009 21, 2009 DNA of Uncultured Organisms Sequenced Using Novel Single-Cell Approach Download a Podcast of this Release! WALNUT CREEK, CA-Scientists from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Bigelow Laboratory for Ocean Sciences have assembled high quality, contamination-free draft genomes of uncultured biodegrading microorganisms using a novel single cell genome sequencing approach. This proof of principle study, published in the April 23 edition of the journal PLoS One, offers researchers a new method to access and decipher the information embedded in genomes of interest with only minute quantities of DNA. "Most of the microbial genomes sequenced to date are derived from organisms cultured in the laboratory," said DOE JGI Director Eddy Rubin.

32

The US Department of Energy Joint Genome Institute Microbial Genome Program  

E-Print Network (OSTI)

Community Sequencing Program (CSP). 24 proposals accepted 10http://www.jgi.doe.gov/CSP/ US DOE Joint Genome InstituteGTL) Community Sequencing Program (CSP) JGI Internal Program

Lapidus, Alla

2005-01-01T23:59:59.000Z

33

Eukaryotic Genomics Data from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer (OSTI)

From the JGI webportal users can choose Eukaryotic genomes from a photo list, access the JGI FTP directories to download data files, use the Tree of Life navigation tool, or choose a genome and go directly to a website specific to that one genome. The individual sites include direct access to download sequence files, BLAST, search, view and navigate the genomic annotations.

34

DOE Joint Genome Institute: Next Gen Sequencing Technology Pinpoint  

NLE Websites -- All DOE Office Websites (Extended Search)

February 12, 2009 February 12, 2009 Next Gen Sequencing Technology Pinpoint "On-Off Switches" in Genomes WALNUT CREEK, CA-Scientists from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), Lawrence Berkeley National Laboratory, and the University of California, San Diego have developed a set of molecular tools that provide important insight into the complex genomes of multicellular organisms. The strategy promises to clarify the longstanding mystery of the role played by vast stretches of DNA sequence that do not code for the functional units-genes-that nevertheless may have a powerful regulatory influence. The research is described in the 12 February edition of the journal Nature. DOE bioenergy researchers have an interest in identifying these regulatory

35

DOE Joint Genome Institute: Establishing Standard Definitions for Genome  

NLE Websites -- All DOE Office Websites (Extended Search)

October 8, 2009 October 8, 2009 Establishing Standard Definitions for Genome Sequences Download a podcast of this release! WALNUT CREEK, CA-In 1996, researchers from major genome sequencing centers around the world convened on the island of Bermuda and defined a finished genome as a gapless sequence with a nucleotide error rate of one or less in 10,000 bases. This effectively set the quality target for the human genome effort and was quickly applied to other genome projects. If a genome sequence didn't meet this stringent criterion, it was simply considered a "draft." More than a decade later, researchers are finding that with the advent of the latest sequencing technologies the terms "draft" and "finished" are no longer sufficient to describe the varying levels of genome sequence

36

DOE Joint Genome Institute: Adaptable Button Mushroom Serves Up  

NLE Websites -- All DOE Office Websites (Extended Search)

8, 2012 8, 2012 Adaptable Button Mushroom Serves Up Biomass-Degrading Genes Critical to Managing the Planet's Carbon Stores The button mushroom occupies a prominent place in our diet and in the grocery store where it boasts a tasty multibillion-dollar niche, while in nature, Agaricus bisporus is known to decay leaf matter on the forest floor. Now, owing to an international collaboration of two-dozen institutions led by the French National Institute for Agricultural Research (INRA) and the U.S. Department of Energy Joint Genome Institute (DOE JGI), the full repertoire of A. bisporus genes has been determined. In particular, new work shows how its genes are actually deployed not only in leaf decay but also wood decay and in the development of fruiting bodies (the above ground part of the mushroom harvested for food). The work also

37

DOE Joint Genome Institute: Brown Tide Culprit Sequenced: Genome...  

NLE Websites -- All DOE Office Websites (Extended Search)

Culprit Sequenced: Genome of the First of Algal Bloom Species WALNUT CREEK, Calif.- Algae play key roles in the global carbon cycle, helping sequester significant amounts of...

38

DOE Joint Genome Institute: DOE JGI Announces 2011 Community Sequencing  

NLE Websites -- All DOE Office Websites (Extended Search)

October 4, 2010 October 4, 2010 Bigger is Better: DOE JGI Announces 2011 Community Sequencing Program Portfolio The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has selected 35 new genomic sequencing projects for its 2011 Community Sequencing Program (CSP)-a targeted sampling of the planet's biodiversity-to be characterized for bioenergy and environmental applications. A sample of CSP 2011 projects *[see photo credits below] Supported by the Office of Biological and Environmental Research in the DOE Office of Science, the DOE JGI's Community Sequencing Program enables scientists from universities and national laboratories around the world to probe the hidden world of microbes and plants for innovative solutions to the nation's major challenges in energy, climate, and environment. This

39

DOE Joint Genome Institute: Breaking down cellulose without blasting  

NLE Websites -- All DOE Office Websites (Extended Search)

4, 2011 4, 2011 Breaking down cellulose without blasting lignin: "Dry rot" genome offers lessons for biofuel pretreatment WALNUT CREEK, Calif.-Feared by realtors and homeowners alike, dry rot due to the fungus Serpula lacrymans causes millions of dollars worth of damage to homes and buildings around the world. This brown rot fungus' capacity to break down the cellulose in wood led to its selection for sequencing by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) in 2007, with the goal of identifying the enzymes involved in the degradation process and using the information to improve cellulosic biofuels production. Photo: A variant of Serpula lacrymans causes dry rot. (Dave Brown via Flickr/Creative Commons Attribution 2.0) As reported online July 14 in Science Express, an international team of

40

DOE Joint Genome Institute: Spikemoss Genome Offers New Paths...  

NLE Websites -- All DOE Office Websites (Extended Search)

5, 2011 Spikemoss Genome Offers New Paths for Biofuels Research--Bridges Plant Development Gap WALNUT CREEK, Calif.- It's not quite Christmas, but the DNA sequence of a small plant...

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


41

DOE Joint Genome Institute: Peach Genome Offers Insights into Breeding  

NLE Websites -- All DOE Office Websites (Extended Search)

March 24, 2013 March 24, 2013 Peach Genome Offers Insights into Breeding Strategies for Biofuels Crops Rapidly growing trees like poplars and willows are candidate "biofuel crops" from which it is expected that cellulosic ethanol and higher energy content fuels can be efficiently extracted. Domesticating these crops requires a deep understanding of the physiology and genetics of trees, and scientists are turning to long-domesticated fruit trees for hints. The relationship between a peach and a poplar may not be obvious at first glance, but to botanists both trees are part of the rosid superfamily, which includes not only fruit crops like apples, strawberries, cherries, and almonds, but many other plants as well, including rose that gives the superfamily its name.

42

DOE Joint Genome Institute: Model Microbial Community for Studying  

NLE Websites -- All DOE Office Websites (Extended Search)

October 22, 2009 October 22, 2009 Model Microbial Community for Studying Expanding Dead Zones Characterized WALNUT CREEK, CA-Among the many changes in the ocean is the expansion of oxygen-deficient or oxygen minimum zones (OMZs), also known as dead zones, which affect the processes by which carbon is captured and sequestered on the seafloor and alter the microbial activities that impact the rate and magnitude of ocean carbon sequestration. Despite the importance of these effects, very little is known about the metabolism of OMZ microbes and how they respond to environmental changes. In the Oct. 23 issue of the journal Science, researchers from the University of British Columbia and the U.S. Department of Energy Joint Genome Institute (DOE JGI) describe the metagenome of an abundant but

43

DOE Joint Genome Institute | U.S. DOE Office of Science (SC)  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute DOE Joint Genome Institute Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3251 F: (301)

44

Integrated Microbial Genomes (IMG) System from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer (OSTI)

The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and annotating genomes, genes and functions, individually or in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through quarterly releases. IMG is provided by the DOE-Joint Genome Institute (JGI) and is available from http://img.jgi.doe.gov. [Abstract from The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions; Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Natalia N. Ivanova and Nikos C. Kyrpides; Nucleic Acids Research, 2008, Vol. 36. (Database Issue) See also the companion system, Integrated Microbial Genomes with Microbiome Samples.

45

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

S, et al. Comparative genome sequencing of DrosophilaInternational Human Genome Sequencing Consortium. FinishingWhile NIH-funded genome sequencing activities largely

Gilbert, David

2005-01-01T23:59:59.000Z

46

doi:10.1093/nar/gkr947 The Genome Portal of the Department of Energy Joint Genome Institute  

E-Print Network (OSTI)

The Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility with massive-scale DNA sequencing and analysis capabilities dedicated to advancing genomics for bioenergy and environmental applications. Beyond generating tens of trillions of DNA bases annually, the Institute develops and maintains data management systems and specialized analytical capabilities to manage and interpret complex genomic data sets, and to enable an expanding community of users around the world to analyze these data in different contexts over the web. The JGI Genome Portal

Igor V. Grigoriev; Henrik Nordberg; Igor Shabalov; Andrea Aerts; Mike Cantor; David Goodstein; Alan Kuo; Simon Minovitsky; Roman Nikitin; Robin A. Ohm; Robert Otillar; Alex Poliakov; Igor Ratnere; Robert Riley; Tatyana Smirnova; Daniel Rokhsar; Inna Dubchak

2011-01-01T23:59:59.000Z

47

DOE Joint Genome Institute: Exploring Standards to Advance Microbial...  

NLE Websites -- All DOE Office Websites (Extended Search)

July 9, 2009 Exploring Standards to Advance Microbial Genomics WALNUT CREEK, CA-Microbes contribute to manifold human endeavors ranging from bioenergy to agriculture to medicine....

48

DOE Joint Genome Institute: Up from the Depths: How Bacteria...  

NLE Websites -- All DOE Office Websites (Extended Search)

to verify the predominant bacterial lineages capable of trapping carbon in this deep underwater region. "This study represents a pristine example for the use of single cell genome...

49

2012 U.S. Department of Energy: Joint Genome Institute: Progress Report  

Science Conference Proceedings (OSTI)

The mission of the U.S. Department of Energy Joint Genome Institute (DOE JGI) is to serve the diverse scientific community as a user facility, enabling the application of large-scale genomics and analysis of plants, microbes, and communities of microbes to address the DOE mission goals in bioenergy and the environment. The DOE JGI's sequencing efforts fall under the Eukaryote Super Program, which includes the Plant and Fungal Genomics Programs; and the Prokaryote Super Program, which includes the Microbial Genomics and Metagenomics Programs. In 2012, several projects made news for their contributions to energy and environment research.

Gilbert, David [DOE JGI Public Affairs Manager] [DOE JGI Public Affairs Manager

2013-01-01T23:59:59.000Z

50

DOE Joint Genome Institute: 2013 DOE JGI Community Sequencing...  

NLE Websites -- All DOE Office Websites (Extended Search)

transposon mutagenesis (TnSeq), a method of generating large sets of random mutations in target DNA. These techniques will allow the DOE JGI to study in greater depth the genomes...

51

DOE Joint Genome Institute. Relative Reference: Foxtail Millet Offers Clues  

NLE Websites -- All DOE Office Websites (Extended Search)

May 14, 2012 May 14, 2012 Relative Reference: Foxtail Millet Offers Clues for Assembling the Switchgrass Genome Arranging DNA fragments into a genome sequence that scientists can interpret is a challenge often compared to assembling a puzzle, except there is no box to provide an idea of what the picture is even supposed to be. Sometimes there's guidance in the form of other publicly-available DNA sequences from related organisms that can be used to guide the assembly process, but its usefulness depends on how closely related any two sequences are to one another. For example, a reference genome might be so distantly related from the one being assembled, it would be akin to comparing a Model-T to a contemporary hybrid car. Foxtail millet Photo: Foxtail millet (S. italica) panicle by Katrien Devos, University of

52

U.S Department of Energy Joint Genome Institute Progress Report  

NLE Websites -- All DOE Office Websites (Extended Search)

S Department of Energy S Department of Energy Joint Genome Institute Progress Report 2009 Representatives of the four DOE JGI genome programs (plant, fungal, metagenome, and microbe) grace the cover of this annual report. Three of the organisms were among the 81 projects selected in 2009 for the 2010 Community Sequencing Program portfolio. Photo credits, clockwise from bottom left: Brachypodium distachyon by Roy Kaltschmidt, LBNL; Amanita thiersii fungus by Joe McFarland; Cow rumen metagenome by Gemma Henderson, AgResearch; Soybeans by Roy Kaltschmidt, LBNL; Zymomonas mobilis Z4 by Katherine Pappas, University of Athens U.S Department of Energy Joint Genome Institute Progress Report 2009 DOE JGI Mission . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 Director's

53

DOE Joint Genome Institute: Same Fungus, Different Strains: A Comparative  

NLE Websites -- All DOE Office Websites (Extended Search)

3, 2011 3, 2011 Same Fungus, Different Strains: A Comparative Genomics Approach for Improved "Green" Chemical Production WALNUT CREEK, Calif.-Fungi play key roles in nature and are valued for their great importance in industry. Consider citric acid, a key additive in several foods and pharmaceuticals produced on a large-scale basis for decades with the help of the filamentous fungus Aspergillus niger. While A. niger is an integral player in the carbon cycle, it possesses an arsenal of enzymes that can be deployed in breaking down plant cell walls to free up sugars that can then be fermented and distilled into biofuel, a process being optimized by U.S. Department of Energy researchers. Susannah Tringe Photo: Aspergillus niger conidiospore by Kathie T. Hodges, Cornell.

54

DOE Joint Genome Institute: A DOE Office of Science User Facility of  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute DOE Joint Genome Institute Latest News R. irregularis December 20, 2013 A gluttonous plant reveals how its cellular power plant devours foreign DNA. Amborella trichopoda, a sprawling shrub that grows on just a single island in the remote South Pacific, is the only plant in its family and genus. It is also one of the oldest flowering plants, having branched off from others about 200 million years ago. more... R. irregularis November 25, 2013 How Scavenging Fungi Became a Plant's Best Friend. Glomeromycota is an ancient lineage of fungi that has a symbiotic relationship with roots that goes back nearly 420 million years to the earliest plants. More than two thirds of the world's plants depend on this soil-dwelling symbiotic fungus to survive, including critical agricultural crops such as wheat,

55

U.S. Department of Energy Joint Genome Institute Progress Report  

NLE Websites -- All DOE Office Websites (Extended Search)

U.S. Department of Energy Joint Genome Institute Progress Report Sequencing the world of possibilities for energy and the environment Table of Contents DOE JGI Mission ........................................................ 7 Director's Perspective.................................................... 8 DOE Mission Areas ................................................... 12 By the Numbers.......................................................... 14 User Map ............................................................ 15 Scientific Literature/Impact ................................ 16 DOE JGI Sequence Output .............................. 17 DOE JGI Team Science Realized ....................... 18 DOE JGI User Community ............................... 19 User Meeting 5 ...........................................................

56

Science Videos from DOE's Joint Genome Institute on YouTube  

DOE Data Explorer (OSTI)

DOE's Joint Genome Institute began posting lab-produced videos on YouTube in September of 2008. Many of JGI's YouTube videos are of speakers' presentations at meetings and workshops; others may be promotional or educational in nature. They are freely available to the public for viewing and can be interactively shared or commented on. Users can subscribe and be notified when new videos are posted to their specific area of interest.

57

JGI Visiting Scientist Program The DOE Joint Genome Institute Visiting Scientist Program (VSP)  

NLE Websites -- All DOE Office Websites (Extended Search)

Visiting Scientist Program Visiting Scientist Program The DOE Joint Genome Institute Visiting Scientist Program (VSP) provides an opportunity for researchers who are seeking to build upon their line of scientific inquiry by leveraging JGI experimental, computational, and personnel resources for genomic research and sequence-based science. Projects include de novo generation of genome data, assistance in interpreting and/or building on an existing data set, or the refining of new technology (e.g., single-cell genomics; metagenomics, etc.). Length of stay depends on complexity of the project being considered and availability of data and other resources. Investigators, post docs, and graduate students participating in approved JGI User Projects are also invited to apply for on-site access to JGI

58

DOE Joint Genome Institute: Genes from Tiny Algae Shed Light on Big Role  

NLE Websites -- All DOE Office Websites (Extended Search)

April 9, 2009 April 9, 2009 Genes from Tiny Algae Shed Light on Big Role Managing Carbon in World's Oceans & Coping with Environmental Change WALNUT CREEK, CA-Scientists from two-dozen research organizations led by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Monterey Bay Aquarium Research Institute (MBARI) have decoded genomes of two algal strains, highlighting the genes enabling them to capture carbon and maintain its delicate balance in the oceans. These findings, from a team led by Alexandra Z. Worden of MBARI and published in the April 10 edition of the journal Science, will illuminate cellular processes related to algae-derived biofuels being pursued by DOE scientists. The study sampled two geographically diverse isolates of the photosynthetic

59

Illumina Production Sequencing at the DOE Joint Genome Institute - Workflow and Optimizations  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy (DOE) Joint Genome Institute?s (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the DOE mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI?s Production Sequencing group, the Illumina Genome Analyzer pipeline has been established as one of three sequencing platforms, along with Roche/454 and ABI/Sanger. Optimization of the Illumina pipeline has been ongoing with the aim of continual process improvement of the laboratory workflow. These process improvement projects are being led by the JGI?s Process Optimization, Sequencing Technologies, Instrumentation& Engineering, and the New Technology Production groups. Primary focus has been on improving the procedural ergonomics and the technicians? operating environment, reducing manually intensive technician operations with different tools, reducing associated production costs, and improving the overall process and generated sequence quality. The U.S. DOE JGI was established in 1997 in Walnut Creek, CA, to unite the expertise and resources of five national laboratories? Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest ? along with HudsonAlpha Institute for Biotechnology. JGI is operated by the University of California for the U.S. DOE.

Tarver, Angela; Fern, Alison; Diego, Matthew San; Kennedy, Megan; Zane, Matthew; Daum, Christopher; Hack, Christopher; Tang, Eric; Deshpande, Shweta; Cheng, Jan-Fang; Roberts, Simon; Alexandre, Melanie; Harmon-Smith, Miranda; Lucas, Susan

2010-06-18T23:59:59.000Z

60

DOE Joint Genome Institute. Pulp NonFiction: Fungal Analysis Reveals Clues  

NLE Websites -- All DOE Office Websites (Extended Search)

March 22, 2012 March 22, 2012 Pulp NonFiction: Fungal Analysis Reveals Clues for Targeted Biomass Deconstruction Without fungi and microbes to break down dead trees and leaf litter in nature, the forest floor might look like a scene from TV's "Hoarders." Ceriporiopsis subvermispora mycelium on wood Photo: Scanning electron micrograph of Ceriporiopsis subvermispora mycelium on wood. (R. Blanchette, University of Minnesota) Massive-scale genome sequencing projects supported by the U.S. Department of Energy (DOE) and being carried out at the DOE Joint Genome Institute (JGI) highlight the importance of learning how the cellulose, hemicellulose and lignin that serve as a plant's infrastructure can be broken down by these forest organisms to extract needed nutrients. Among the fungi being

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


61

DOE Joint Genome Institute: A DOE Office of Science User Facility of  

NLE Websites -- All DOE Office Websites

MyJGISubmit ProposalsInternalEmergency InfoCareers MyJGISubmit ProposalsInternalEmergency InfoCareers JGI website People Go Genomes Project List User Programs Sequencing Informatics Systems Education News & Publications Events About Us JGI Home DOE Joint Genome Institute Latest News R. irregularis December 20, 2013 A gluttonous plant reveals how its cellular power plant devours foreign DNA. Amborella trichopoda, a sprawling shrub that grows on just a single island in the remote South Pacific, is the only plant in its family and genus. It is also one of the oldest flowering plants, having branched off from others about 200 million years ago. more... R. irregularis November 25, 2013 How Scavenging Fungi Became a Plant's Best Friend. Glomeromycota is an ancient lineage of fungi that has a symbiotic relationship with roots that

62

DOE Joint Genome Institute: Making up the gut microbiome is a host-driven  

NLE Websites -- All DOE Office Websites (Extended Search)

November 16, 2010 November 16, 2010 Making up the gut microbiome is a host-driven project Baking sourdough bread requires a starter, and so do mammalian guts, which are first colonized by microbial communities from the mother and then acquire more microbes over time. These gut microbial communities are important for maintaining health and combating disease, and it's why the Human Microbiome Project launched by the National Institutes of Health in 2008 is studying the microbial communities that populate the human body by sequencing them and assembling a reference catalog, a project that involves researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). G. beringei Photo: G. beringei by rbleib While the HMP was getting off the ground, DOE JGI collaborator Howard

63

Application of High Performance Computing to the DOE Joint Genomic...  

NLE Websites -- All DOE Office Websites (Extended Search)

Application of High Performance Computing to the DOE Joint Genomic Institute's Data Challenges January 25-26, 2010 DOE Joint Genome Institute, Walnut Creek, CA USA -by invitation...

64

DOE Joint Genome Institute: Tringe on Popular Science's "Brilliant 10"  

NLE Websites -- All DOE Office Websites (Extended Search)

6, 2011 6, 2011 Tringe on Popular Science's "Brilliant 10" List WALNUT CREEK, Calif.-Susannah Green Tringe of the DOE Joint Genome Institute (DOE JGI) has been named one of 2011's "Brilliant 10," the annual list compiled by Popular Science magazine of top young researchers. In adding her name to the list, which appears in the October issue, the magazine recognized her $2.5 million grant from the DOE Early Career Research Program to study the role of microbial communities in restored wetlands in the San Francisco Bay-Delta region of California and their impact on long-term carbon sequestration. Bigelow's Dashiell Masland working Photo: Tringe wading into the Brilliant 10 list The Popular Science Brilliant 10 recognizes scientists and researchers

65

Robotic Enrichment Processing of Roche 454 Titanium Emlusion PCR at the DOE Joint Genome Institute  

E-Print Network (OSTI)

of Roche 454 Titanium Emulsion PCR at the DOE Joint GenomeEnrichment of emulsion PCR product is the most laborious andand 2X Enrichment Emulsion PCR Emulsion Breaking Enhancing

Hamilton, Matthew

2010-01-01T23:59:59.000Z

66

DOE Joint Genome Institute: Mite-y Genomic Resources For Bioenergy Crop  

NLE Websites -- All DOE Office Websites (Extended Search)

23, 2011 23, 2011 Mite-y Genomic Resources For Bioenergy Crop Protection WALNUT CREEK/BERKELEY, Calif.-For a pest that isn't quite the size of a comma on a keyboard, the two-spotted spider mite can do a disproportionate amount of damage. These web-spinners extract the nutrients they need from leaves of more than a thousand different plant species, including bioenergy feedstocks and food staples. The cost of chemically controlling spider mites to counteract reduced harvest yields hovers around $1 billion annually, reflecting their significant economic impact. spider mite Photo: The web-spinning two-spotted spider mite was sequenced at the DOE JGI. (M. Grbic) With a 90-million nucleotide genome, the smallest of those that belong to the group of animals with external skeletons or arthropods, the two-spotted

67

DOE Joint Genome Institute: Beyond Genomics-DOE JGI leads method  

NLE Websites -- All DOE Office Websites (Extended Search)

September 20, 2010 September 20, 2010 Beyond Genomics-DOE JGI leads method validation effort in Metatranscriptomics Ultra-high throughput DNA sequencing platforms that allow researchers to sequence the genetic code of organisms at lightning speed for just pennies are enabling more focused genomic studies on a massive scale. One example involves the transcriptome, a tiny but complex fraction of the complete genetic sequence that is transcribed into different types of RNA molecules. These molecules provide researchers with information about what genes are turned on and off under various conditions, and what the functions of these genes are. Researchers focus on the messenger RNA (mRNA), which transfer the genetic information from the DNA to functional proteins. The bulk of cellular RNA

68

DOE Joint Genome Institute: Sentinel of Change: Water Flea Genome to  

NLE Websites -- All DOE Office Websites (Extended Search)

February 3, 2011 February 3, 2011 Sentinel of Change: Water Flea Genome to Improve Environmental Monitoring Capabilities WALNUT CREEK, Calif.-A tiny crustacean that has been used for decades to develop and monitor environmental regulations is the first of its kind to have its genetic code sequenced and analyzed-revealing the most gene-packed animal characterized to date. The information deciphered could help researchers develop and conduct real-time monitoring systems of the effects of environmental remediation efforts. Daphnia pulex (commonly called water flea) Photo: Dr. Jan Michels, Christian-Albrechts-University, Kiel Daphnia pulex (commonly called water flea) Considered a keystone species in freshwater ecosystems, the water flea, Daphnia pulex, is roughly the size of the equal sign on a keyboard. Its 200

69

Illumina GA IIx& HiSeq 2000 Production Sequenccing and QC Analysis Pipelines at the DOE Joint Genome Institute  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy (DOE) Joint Genome Institute's (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI's Production Sequencing group, a robust Illumina Genome Analyzer and HiSeq pipeline has been established. Optimization of the sesequencer pipelines has been ongoing with the aim of continual process improvement of the laboratory workflow, reducing operational costs and project cycle times to increases ample throughput, and improving the overall quality of the sequence generated. A sequence QC analysis pipeline has been implemented to automatically generate read and assembly level quality metrics. The foremost of these optimization projects, along with sequencing and operational strategies, throughput numbers, and sequencing quality results will be presented.

Daum, Christopher; Zane, Matthew; Han, James; Kennedy, Megan; San Diego, Matthew; Copeland, Alex; Li, Mingkun; Lucas, Susan

2011-01-31T23:59:59.000Z

70

First Annual U.S. Department of Energy Office of Science Joint Genome Institute User Meeting  

E-Print Network (OSTI)

relatives for genome sequencing (A. lyrata and CapsellaThis is our rationale for genome sequencing of a free-livingof de Novo Genome Sequencing with 454 Technology Stephen

Various

2006-01-01T23:59:59.000Z

71

Joint Institutes | ornl.gov  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Institutes SHARE Joint Institutes ORNL, in partnership with the Science Alliance of the University of Tennessee, Knoxville, has a number of cooperative ventures in science...

72

Joint Theory Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Program General Info Program General Info Registration Info Directions to Argonne Dynamics of Symmetry Breaking A Workshop sponsored by the ANL/UChicago Joint Theory Institute April 13-17, 2009 Argonne National Laboratory, IL The Joint Theory Institute (JTI) is a multi-disciplinary research institution jointly supported at the University of Chicago and Argonne National Laboratory to enhance collaborative research between both institutions in the broad area of theory. This year JTI sponsors a workshop the aim of which is to explore the dynamics of symmetry breaking in a broad range of systems from nuclear physics to string theory, using theoretical insights such as Dyson-Schwinger equations formalism, gauge/gravity duality and lattice QCD. We will focus on systems which exhibit dynamical symmetry breaking and will cover topics essential for understanding nonperturbative QCD and physics of quark-gluon plasma.

73

DOE Joint Genome Institute: DOE JGI Produces New QC Tool for Microbial  

NLE Websites -- All DOE Office Websites (Extended Search)

May 24, 2010 May 24, 2010 DOE JGI Produces New QC Tool for Microbial Genomes WALNUT CREEK, CA-More than a thousand microbial genomes have been sequenced at various sequencing centers in the past 15 years to better understand their roles in tasks ranging from bioenergy to health to environmental cleanup. Conservative estimates suggest roughly 10,000 microbial genomes will be publicly available within the next two years, but genomic standards have not caught up with the technological advances that have made the sequencing process faster and cheaper. As a result, the torrent of DNA sequences being released has varying levels of quality, which impacts researchers' ability to use this information. To assist in checking the quality of the microbial genomic DNA sequences generated before they are submitted to the federally funded public archive

74

DOE Joint Genome Institute: First Wild Grass Species and Model System for  

NLE Websites -- All DOE Office Websites (Extended Search)

February 10, 2010 February 10, 2010 First Wild Grass Species and Model System for Energy Crops Sequenced WALNUT CREEK, CA-As the U.S. Department of Energy (DOE) works toward developing sustainable sources of clean renewable energy, perennial grasses have emerged as major candidates for the commercial production of cellulosic biofuels from feedstocks. However, little is known about the specific biological traits of the grasses that might contribute to their usefulness for energy production, in part because such grasses typically have long lifecycles and possess large, complex genomes, making them difficult to study. Representative genomes for two of the three major subfamilies of grasses-those that include rice, maize, sorghum and sugar cane-have already been sequenced. Now in the February 11 edition of the journal

75

Cluster Overview of Archaeal Life (COAL) from the DOE Joint Genome Institute  

DOE Data Explorer (OSTI)

COAL is an acronym for Cluster Overview of Archaeal Life. The purpose of COAL is to visualize protein orthology and to relate orthology with additional information derived from their genomes. This information includes phylogeny, ecotype, metabolism, thermal preference and aerobicity. The protein orthology networks are also subclustered, when possible, using a bipartioning approach based on spectral clustering. COAL clusters are of three types; root, stem and leaf. Enter a cluster number into the Cluster box on the Main COAL page at http://coal.jgi-psf.org/coal/ and click Update. The cluster appears as a network of nodes (proteins) connected by edges representing the orthology. Various information about the cluster will be loaded below the applet, along with information of the individual proteins. Proteins can be highlighted according to the phylogenetic placement of their genomes. Currently, there are four categories of metadata in COAL, oxygen usage (e.g. aerobe, anaerobe), Metabolism (e.g. Chemoorganoheterotroph, Chemolithoautotroph), thermal preference (e.g. hyperthermophile, mesophile) and ecotype (e.g. marine, aquatic).[Taken with liberal editing from the COAL Help page.

76

DOE Joint Genome Institute: Fungal Map of Mutations Key to Increasing  

NLE Websites -- All DOE Office Websites (Extended Search)

September 1, 2009 September 1, 2009 Fungal Map of Mutations Key to Increasing Enzyme Production for Bioenergy Use Download a podcast of this release! WALNUT CREEK, CA-In half a century, one fungus has gone from being the bane of the Army quartermasters' existence in the Pacific to industry staple and someday, as part of the U.S. Department of Energy's mission to promote national energy security through clean, renewable energy development, a biofuel producers' best friend. Trichoderma reesei's makeover is due in part to scientific explorations that led to the development of mutant fungal strains that produce large quantities of biomass-degrading enzymes. T. reesei Image: T. reesei, courtesy of Irma Salovuori, VTT Biotechnology Now an international team of researchers led by scientists at the DOE Joint

77

JIBS | Joint Institute for Biological Sciences | ORNL  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Institute for Biological Sciences SHARE Joint Institute for Biological Sciences The Joint Institute of ORNL and the University of Tennessee has a single mission: to enable...

78

Joint Institute for High Temperatures  

National Nuclear Security Administration (NNSA)

Joint Institute for High Temperatures of Russian Academy of Sciences Moscow Institute of Physics and Technology Extended title Extended title Excited state of warm dense matter or Exotic state of warm dense matter or Novel form of warm dense matter or New form of plasma Three sources of generation similarity: solid state density, two temperatures: electron temperature about tens eV, cold ions keep original crystallographic positions, but electron band structure and phonon dispersion are changed, transient but steady (quasi-stationary for a short time) state of non-equilibrium, uniform plasmas (no reference to non-ideality, both strongly and weakly coupled plasmas can be formed) spectral line spectra are emitted by ion cores embedded in plasma environment which influences the spectra strongly,

79

Genomics, Gene Expression and Other Studies in Soybean Rust  

E-Print Network (OSTI)

Joint Genome Institute Genomics, Gene Expression and otherRust Martha Lucía Posada-Buitrago Ph.D Genomics DivisionEvolutionary Genomics DOE- Joint Genome Institute Lawrence

Posada-Buitrago, Martha Lucia

2005-01-01T23:59:59.000Z

80

Joint Institute for Neutron Sciences | ornl.gov  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Institute for Neutron Sciences SHARE Joint Institute for Neutron Sciences JINS is located on Chestnut Ridge within the 80-acre SNS site, part of Oak Ridge National...

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


81

DOE JGI Microbial Genomics & Metagenomics Workshops  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute Microbial Genomics & Metagenomics Workshops Walnut Creek, California The U.S. Department of Energy Joint Genome Institute (DOE JGI) will be offering...

82

Genomics, Gene Expression and Other Studies in Soybean Rust  

E-Print Network (OSTI)

by Christine Stone GENOME SEQUENCING PROJECT PhakopsoraUS DOE Joint Genome Institute DNA sequencing process LibraryUS DOE Joint Genome Institute DNA sequencing process Rolling

Posada-Buitrago, Martha Lucia

2005-01-01T23:59:59.000Z

83

Joint Global Change Research Institute | Open Energy Information  

Open Energy Info (EERE)

Global Change Research Institute Global Change Research Institute Jump to: navigation, search Logo: Joint Global Change Research Institute Name Joint Global Change Research Institute Agency/Company /Organization Pacific Northwest National Laboratory Sector Energy, Land Focus Area Energy Efficiency Topics Policies/deployment programs, Resource assessment, Pathways analysis Website http://www.globalchange.umd.ed References Global Change Research Institute [1] Abstract The Joint Global Change Research Institute (JGCRI) houses an interdisciplinary team dedicated to understanding the problems of global climate change and their potential solutions. Joint Institute staff bring decades of experience and expertise to bear in science, technology, economics, and policy. "The Joint Global Change Research Institute (JGCRI) houses an

84

Joint Quantum Institute Created by University of Maryland ...  

Science Conference Proceedings (OSTI)

... establishing the Joint Quantum Institute at the University of Maryland, College Park. Credit: Thai Nguyen, University of Maryland. ...

2012-02-29T23:59:59.000Z

85

Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute  

E-Print Network (OSTI)

Fuels: The Joint BioEnergy Institute Harvey W. Blanch †,‡,§,¶, * † Joint BioEnergy Institute, ‡ Department of Chemicalbiomass monomers. The Joint BioEnergy Institute (JBEI) is a

Blanch, Harvey

2010-01-01T23:59:59.000Z

86

The institutional needs of joint implementation projects  

SciTech Connect

In this paper, the authors discuss options for developing institutions for joint implementation (JI) projects. They focus on the tasks which are unique to JI projects or require additional institutional needs--accepting the project by the host and investor countries and assessing the project`s greenhouse gas (GHG) emission reduction or sequestration--and they suggest the types of institutions that would enhance their performance. The evaluation is based on four sets of governmental and international criteria for JI projects, the experiences of ten pilot JI projects, and the perspectives of seven collaborating authors from China, Egypt, India, Mexico, and Thailand, who interviewed relevant government and non-government staff involved in JI issue assessment in their countries. After examining the roles for potential JI institutions, they present early findings arguing for a decentralized national JI structure, which includes: (1) national governmental panels providing host country acceptance of proposed JI projects; (2) project parties providing the assessment data on the GHG reduction or sequestration for the projects; (3) technical experts calculating these GHG flows; (4) certified verification teams checking the GHG calculations; and (5) members of an international JI Secretariat training and certifying the assessors, as well as resolving challenges to the verifications. 86 refs.

Watt, E.; Sathaye, J. [Lawrence Berkeley Lab., CA (United States); Buen, O. de; Masera, O. [National Univ. of Mexico, Mexico City (Mexico); Gelil, I.A. [Organization of Energy Conservation and Planning, Cairo (Egypt); Ravindranath, N.H. [Indian Inst. of Science, Bangalore (India); Zhou, D.; Li, J. [Energy Research Inst., Beijing (China); Intarapravich, D. [Thailand Environmental Inst., Bangkok (Thailand)

1995-10-21T23:59:59.000Z

87

Joint Institute for Nanoscience Annual Report 2004  

Science Conference Proceedings (OSTI)

Due to the inherently interdisciplinary nature of nanoscience and nanotechnology, research in this arena is often significantly enhanced through creative cooperative activities. The Joint Institute for Nanoscience (JIN) is a venture of the University of Washington (UW) and Pacific Northwest National Laboratory (PNNL) to encourage and enhance high impact and high quality nanoscience and nanotechnology research that leverages the strengths and capabilities of both institutions, and to facilitate education in these areas. This report summarizes JIN award activities that took place during fiscal year 2004 and provides a historical list of JIN awardees, their resulting publications, and JIN-related meetings. Major portions of the JIN efforts and resources are dedicated to funding graduate students and postdoctoral research associates to perform research in collaborations jointly directed by PNNL staff scientists and UW professors. JIN fellowships are awarded on the basis of applications that include research proposals. They have been very successful in expanding collaborations between PNNL and UW, which have led to many excellent joint publications and presentations and enhanced the competitiveness of both institutions for external grant funding. JIN-based interactions are playing a significant role in creating new research directions and reshaping existing research programs at both the UW and PNNL. The JIN also co-sponsors workshops on Nanoscale Science and Technology, four of which have been held in Seattle and one in Richland. In addition to involving PNNL staff in various UW nanoscience courses and seminars, a National Science Foundation grant, Development of UW-PNL Collaborative Curriculums in Nano-Science and Technology, has allowed the development of three intensive short courses that are taught by UW faculty, PNNL staff, and faculty from other institutions, including Washington State University, the University of Idaho, Stanford University, and the University of Alaska. The JIN agreement recognizes that cooperation beyond UW and PNNL is highly valuable. Starting in early 2003, efforts were initiated to form a regional communication link called the Northwest Nanoscience and Nanotechnology Network (N4). In concept, N4 is a tool to encourage communication and help identify regional resources and nanoscience and technology activities.

Baer, Donald R.; Campbell, Charles

2005-02-01T23:59:59.000Z

88

Joint Institute for Nanoscience Annual Report 2003  

SciTech Connect

The Joint Institute for Nanoscience (JIN) is a cooperative venture of the University of Washington and Pacific Northwest National Laboratory to encourage and enhance high-impact and high-quality nanoscience and nanotechnology of all types. This first annual report for the JIN summarizes activities beginning in 2001 and ending at the close of fiscal year 2003 and therefore represents somewhat less than two years of activities. Major portions of the JIN resources are dedicated to funding graduate students and postdoctoral research associates to perform research in collaborations jointly directed by Pacific Northwest National Laboratory (PNNL) staff scientists and University of Washington (UW) professors. These fellowships were awarded on the basis of applications that included research proposals. JIN co-sponsors an annual Nanoscale Science and Technology Workshop held in Seattle. In addition to involving PNNL staff in various UW nanoscience courses and seminars, a National Science Foundation grant Development of UW-PNL Collaborative Curriculums in Nano-Science and Technology has allowed the development of three intensive short courses that are taught by UW faculty, PNNL staff, and faculty from other institutions, including Washington State University, the University of Idaho, Stanford University, and the University of Alaska. The initial JIN agreement recognized that expansion of cooperation beyond UW and PNNL would be highly valuable. Starting in early 2003, efforts were initiated to form a regional communication link called the Northwest Nanoscience and Nanotechnology Network (N?). In concept, N? is a tool to encourage communication and help identify regional resources and nanoscience and technology activities.

Baer, Donald R.; Campbell, Charles

2004-02-01T23:59:59.000Z

89

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

JGI Mission Areas Bioenergy Carbon Cycling BiogeochemistryJGI User Community DOE Bioenergy Research Center Sequencinginteractions with the DOE Bioenergy Research Centers, and

Gilbert, David

2009-01-01T23:59:59.000Z

90

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

digestion, could produce biogas—primarily methane and carbongasoline per day. When biogas is cleaned of its particulates

Gilbert, David

2009-01-01T23:59:59.000Z

91

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

soon be, targets of keen interest in the biofuels researchtarget. Current biofuel production meth- ods, such as corn-to-ethanol, are a valuable BIOFUELS

Gilbert, David

2009-01-01T23:59:59.000Z

92

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

into operating as a user facility, the DOE JGI modeleditself after other DOE user facilities, such as synchro-s approach to being a user facility is based on the concept

Gilbert, David

2009-01-01T23:59:59.000Z

93

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

ries Oak Ri a ato nt o DO me e DOE l labor amos, onAlph ar tio teg ac ana hem dP or B DOE m ogeoc ides in tional achesmanufacturer, or otherwise, does not necessarily constitute

Gilbert, David

2009-01-01T23:59:59.000Z

94

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

are potential raw materials for production of biofuels. TheRaw plant material, or dedicated bioenergy crops, can provide the starting point for mak- ing biofuels.

Gilbert, David

2009-01-01T23:59:59.000Z

95

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

B: Glossary Appendix C: CSP Sequencing Plans for 2009Community Sequencing Program (CSP). He is also responsibleand im- plemented the CSP which provides large- scale DNA

Gilbert, David

2009-01-01T23:59:59.000Z

96

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Thermoacidophilic proteins for biofuel production. Trends inthat could help improve biofuel production. Diatom Genomedoc/200809/termites) Biofuel’s Holy Grail: Shipworms? (

Gilbert, David

2009-01-01T23:59:59.000Z

97

The Joint BioEnergy Institute (JBEI): Developing New Biofuels by Overcoming Biomass Recalcitrance  

E-Print Network (OSTI)

010-9086-2 The Joint BioEnergy Institute (JBEI): DevelopingThe mission of the Joint BioEnergy Institute is to advanceJ. D. Keasling Joint BioEnergy Institute, 5885 Hollis St. ,

Scheller, Henrik Vibe; Singh, Seema; Blanch, Harvey; Keasling, Jay D.

2010-01-01T23:59:59.000Z

98

Joint Institute for Neutron Sciences | ornl.gov  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Institute for Neutron Sciences Joint Institute for Neutron Sciences SHARE Joint Institute for Neutron Sciences JINS is located on Chestnut Ridge within the 80-acre SNS site, part of Oak Ridge National Laboratory. The Joint Institute for Neutron Sciences (JINS) was founded as a collaborative effort between Oak Ridge National Laboratory (ORNL) and The University of Tennessee to promote the use of neutron scattering in various fields of research. Through worldwide collaborations between researchers of the biological and life sciences, energy sciences, polymer science, condensed matter physics and computational sciences, a synergistic consortium will be created at ORNL to elevate the field of neutron sciences to a new level of efficacy for industry, medicine and frontier research. The goal of JINS is to serve as a gateway for users of the Spallation

99

DOE Joint Genome Institute: Genome Signatures Enable Tracking...  

NLE Websites -- All DOE Office Websites (Extended Search)

into how photosynthetic organisms can be engineered to do what we want, such as make biofuels or other products, rather than what they typically do, which is grow and make...

100

Joint Hydraulic Institute/ASAP Letter of March 30th - Clarification...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Hydraulic InstituteASAP Letter of March 30th - Clarification of Point 2 Joint Hydraulic InstituteASAP Letter of March 30th - Clarification of Point 2 We would like to...

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


101

JGI - Distinguished Postdoctoral Fellow in Genomics  

NLE Websites -- All DOE Office Websites (Extended Search)

Distinguished Postdoctoral Fellow in Genomics The Department of Energy Joint Genome Institute (DOE JGI) in Walnut Creek, CA is soliciting Postdoctoral Fellows working in the...

102

Environmental genomics reveals a single species ecosystem deep within the Earth  

E-Print Network (OSTI)

Environmental genomics reveals a single species ecosystemMaterial for Environmental genomics reveals a single speciesTechnology Program, DOE Joint Genomics Institute, Berkeley,

Chivian, Dylan

2008-01-01T23:59:59.000Z

103

US-Japan Joint Institute for Fusion Theory Annual Report of Activities  

E-Print Network (OSTI)

US-Japan Joint Institute for Fusion Theory Annual Report of Activities April 1, 1992­March 31, 1993 objective of the US-Japan Joint Institute for Fusion Theory (JIFT) program is to advance the theoretical scientist long-term visits, 45 topical workshops, and 45 joint computational projects. The topics and also

Ito, Atsushi

104

US-Japan Joint Institute for Fusion Theory Annual Report of Activities  

E-Print Network (OSTI)

US-Japan Joint Institute for Fusion Theory Annual Report of Activities April 1, 1994­March 31, 1995), and the Joint Institute for Fusion Theory (JIFT). The objectives of the JIFT program are: (1) to advance (three from each country), and a fluctuating number of joint computational projects (on the order

Ito, Atsushi

105

REACLIB Database from the Joint Institute for Nuclear Astrophysics (JINA)  

DOE Data Explorer (OSTI)

The Joint Institute for Nuclear Astrophysics is NSF-funded, but four of DOE's National Laboratories are involved in the REACLIB database. The database is a large and important resource for nuclear reaction rates used in astrophysical model calculations. It contains multiple versions of each rate with one recommended rate and is continuously updated. Public REACLIB releases are available as libraries and represent snapshots of the database on a particular date. Users can also define their own libraries and make them public to document the rates they used. Users are not required to have an account to browse and download data. You will need an account only if you wish to create and manage your own libraries.

106

Communicating Genomics:GTL  

NLE Websites -- All DOE Office Websites (Extended Search)

Annual Annual DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 29-April 1, 2006 Embassy Suites Hotel and DOE Joint Genome Institute Walnut Creek, California iii Contents Agenda .................................................................................................................. iv Speaker Presentations . .........................................................................................1 Abtracts in order of presentation according to agenda (p. iv) Poster Presentations ..............................................................................................9 Posters alphabetical by first author. *Presenting author. Attendees...............................................................................................................75

107

DOE Joint Genome Institute: Tracking the Remnants of the Carbon...  

NLE Websites -- All DOE Office Websites (Extended Search)

Tracking the Remnants of the Carbon Cycle: How an Ancestral Fungus May Have Influenced Coal Formation For want of a nail, the nursery rhyme goes, a kingdom was lost. A similar,...

108

DOE Joint Genome Institute: DNA Sequencing Reveals Complex Microbial...  

NLE Websites -- All DOE Office Websites (Extended Search)

operates at higher than normal temperatures to help degrade terephthalate (TA) wastewater that results from the production of a raw chemical used to make many plastic...

109

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for...

110

DOE Joint Genome Institute: Formidable Fungal Force Counters...  

NLE Websites -- All DOE Office Websites (Extended Search)

applications, fungi provide a source of enzymes to catalyze such processes as generating biofuels from plant biomass. One large fungal group with such enzymes are the rust plant...

111

The DOE Joint Genome Institute Expands Capabilities via New Partnershi...  

NLE Websites -- All DOE Office Websites (Extended Search)

Expands Capabilities via New Partnerships With the publication last year of its strategic plan, "Forging the Future - A Ten-Year Strategic Vision" the U.S. Department of...

112

DOE Joint Genome Institute: Tiny Algae Shed Light on Photosynthesis...  

NLE Websites -- All DOE Office Websites (Extended Search)

children learn is the recipe for photosynthesis, combining carbon dioxide, water and solar energy to produce organic compounds. Many of the world's most important...

113

U.S. Department of Energy Joint Genome Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

areas indicate regions with more chlorophyll, while the blue regions designate xylem tissues involved in transporting water and nutrients. (Image by BESC researcher Shi-You...

114

DOE Joint Genome Institute: Breaking Biomass Better, DOE JGI...  

NLE Websites -- All DOE Office Websites (Extended Search)

12, 2010 Breaking Biomass Better: DOE JGI Sequences Wood Decaying Fungus to Advance Biofuels Prospects WALNUT CREEK, CA-One of the challenges in making cellulosic biofuels...

115

DOE Joint Genome Institute: Rot's Unique Wood Degrading Machinery...  

NLE Websites -- All DOE Office Websites (Extended Search)

February 5, 2009 Rot's Unique Wood Degrading Machinery to be Harnessed for Better Biofuels Production WALNUT CREEK, CA-An international team led by scientists from the U.S....

116

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

as a non-traditional user facility, the JGI is empoweringserve as a traditional user facility driven by DOE missionexperience running user facilities, it has become clear that

Gilbert, David

2005-01-01T23:59:59.000Z

117

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

APPENDIX B: 2005 & 2006 CSP DNA Sequencing Projects cont.+ Appendix B: 2005 and 2006 CSP DNA Sequencing Projects + +Community Sequencing Program (CSP) Traditionally, beyond its

Gilbert, David

2005-01-01T23:59:59.000Z

118

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

processes, and alternative energy production. Faster andin the areas of alternative energy production, car- bonsequestration, and alternative energy production. invaluable

Gilbert, David

2005-01-01T23:59:59.000Z

119

US-Japan Joint Institute for Fusion Theory Page 1 Annual Report of Activities for 1998-1999  

E-Print Network (OSTI)

US-Japan Joint Institute for Fusion Theory Page 1 Annual Report of Activities for 1998-1999 TO-01, Japan #12;US-Japan Joint Institute for Fusion Theory Page 2 Annual Report of Activities for 1998-1999 US-Japan Joint Institute for Fusion Theory Annual Report of Activities April 1, 1998­March 31, 1999 R. D

Ito, Atsushi

120

US-Japan Joint Institute for Fusion Theory Page 1 Annual Report of Activities for 1996-97  

E-Print Network (OSTI)

US-Japan Joint Institute for Fusion Theory Page 1 Annual Report of Activities for 1996-97 TO-01, Japan #12;US-Japan Joint Institute for Fusion Theory Page 2 Annual Report of Activities for 1996-97 US-Japan Joint Institute for Fusion Theory Annual Report of Activities April 1, 1996­March 31, 1997 R. D

Ito, Atsushi

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


121

Los Alamos National Laboratory: Bioscience Division: Genome Science...  

NLE Websites -- All DOE Office Websites (Extended Search)

areas. B-6 Teams Applications Bioinformatics Computational Finishing Project Management Sequencing Technology Focus on Research Links Resources Joint Genome Institute (JGI)...

122

Personnel | VIMSS - Virtual Institute for Microbial Stress and...  

NLE Websites -- All DOE Office Websites (Extended Search)

National Laboratory Email: KKeller@lbl.gov Phil Hugenholtz Microbial Ecology Program DOE Joint Genome Institute 2800 Mitchell Drive Bldg 400-404 Walnut Creek, CA 94598 USA...

123

Genomic Advances to Improve Biomass for Biofuels (Genomics and Bioenergy)  

DOE Green Energy (OSTI)

Lawrence Berkeley National Lab bioscientist Daniel Rokhsar discusses genomic advances to improve biomass for biofuels. He presented his talk Feb. 11, 2008 in Berkeley, California as part of Berkeley Lab's community lecture series. Rokhsar works with the U.S. Department of Energy's Joint Genome Institute and Berkeley Lab's Genomics Division.

Rokhsar, Daniel

2008-02-11T23:59:59.000Z

124

New Technique Improves Microbial Genome Assembly | U.S. DOE Office...  

Office of Science (SC) Website

FeedbackShare Page Click to enlarge photo. Enlarge Photo Image courtesy of DOE Joint Genome Institute (JGI), Roy Kaltschmidt DOE JGI researchers have helped develop a...

125

Perspectives on the institutional needs of joint implementation projects for China, Egypt, India, Mexico, and Thailand  

SciTech Connect

One avenue for reducing the net emissions of greenhouse gases (GHG) under the Framework Convention on Climate Change (FCCC) is the joint implementation (JI) of policies and projects to the Convention. Although debate on the practical aspects of JI projects is relatively young, it already includes issues concerning the ability of governments to accept JI projects as well as the project participants` capacity to monitor, evaluate, and verify the financial and GHG benefits. The focus of this paper is an in-depth, country-by-country analysis of current and conceivable institutions in potential host countries. To understand these concerns better, in August 1994 the authors asked colleagues in five developing countries to evaluate their countries` institutional capacity for JI projects. Their perspectives are presented here as individual country case studies. The five countries--Mexico, Egypt, Thailand, India, and China--were chosen because each has significant potential for JI projects.

Mabel, M.; Watt, E.; Sathaye, J. [eds.] [and others

1995-10-01T23:59:59.000Z

126

Molluscan Evolutionary Genomics  

E-Print Network (OSTI)

59179 Molluscan Evolutionary Genomics W. Brian Simison andBoore Molluscan Evolutionary Genomics W. Brian Simison andL. Boore Evolutionary Genomics Department, DOE Joint Genome

Simison, W. Brian

2010-01-01T23:59:59.000Z

127

JGI Fungal Genomics Program  

SciTech Connect

Genomes of energy and environment fungi are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 50 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such 'parts' suggested by comparative genomics and functional analysis in these areas are presented here

Grigoriev, Igor V.

2011-03-14T23:59:59.000Z

128

Communicating Genomics:GTL  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 24-26, 2010 Walnut Creek Marriott Walnut Creek, California iii Contents Speaker Presentations ......................................................................................... 1 Poster Presentations........................................................................................... 11 Attendees............................................................................................................. 67 Author Index ...................................................................................................... 75 iv Posters alphabetical by first author. *Presenting author 1 Speaker Presentations Abstracts alphabetical by speaker

129

Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute  

Science Conference Proceedings (OSTI)

Today, carbon-rich fossil fuels, primarily oil, coal, and natural gas, provide 85% of the energy consumed in the U.S. As world demand increases, oil reserves may become rapidly depleted. Fossil fuel use increases CO{sub 2} emissions and raises the risk of global warming. The high energy content of liquid hydrocarbon fuels makes them the preferred energy source for all modes of transportation. In the U.S. alone, transportation consumes >13.8 million barrels of oil per day and generates 0.5 gigatons of carbon per year. This release of greenhouse gases has spurred research into alternative, nonfossil energy sources. Among the options (nuclear, concentrated solar thermal, geothermal, hydroelectric, wind, solar, and biomass), only biomass has the potential to provide a high-energy-content transportation fuel. Biomass is a renewable resource that can be converted into carbon-neutral transporation fuels. Currently, biofuels such as ethanol are produced largely from grains, but there is a large, untapped resource (estimated at more than a billion tons per year) of plant biomass that could be utilized as a renewable, domestic source of liquid fuels. Well-established processes convert the starch content of the grain into sugars that can be fermented to ethanol. The energy efficiency of starch-based biofuels is however not optimal, while plant cell walls (lignocellulose) represent a huge untapped source of energy. Plant-derived biomass contains cellulose, which is more difficult to convert to sugars; hemicellulose, which contains a diversity of carbohydrates that have to be efficiently degraded by microorganisms to fuels; and lignin, which is recalcitrant to degradation and prevents cost-effective fermentation. The development of cost-effective and energy-efficient processes to transform lignocellulosic biomass into fuels is hampered by significant roadblocks, including the lack of specifically developed energy crops, the difficulty in separating biomass components, low activity of enzymes used to deconstruct biomass, and the inhibitory effect of fuels and processing byproducts on organisms responsible for producing fuels from biomass monomers. The Joint BioEnergy Institute (JBEI) is a U.S. Department of Energy (DOE) Bioenergy Research Center that will address these roadblocks in biofuels production. JBEI draws on the expertise and capabilities of three national laboratories (Lawrence Berkeley National Laboratory (LBNL), Sandia National Laboratories (SNL), and Lawrence Livermore National Laboratory (LLNL)), two leading U.S. universities (University of California campuses at Berkeley (UCB) and Davis (UCD)), and a foundation (Carnegie Institute for Science, Stanford) to develop the scientific and technological base needed to convert the energy stored in lignocellulose into transportation fuels and commodity chemicals. Established scientists from the participating organizations are leading teams of researchers to solve the key scientific problems and develop the tools and infrastructure that will enable other researchers and companies to rapidly develop new biofuels and scale production to meet U.S. transportation needs and to develop and rapidly transition new technologies to the commercial sector. JBEI's biomass-to-biofuels research approach is based in three interrelated scientific divisions and a technologies division. The Feedstocks Division will develop improved plant energy crops to serve as the raw materials for biofuels. The Deconstruction Division will investigate the conversion of this lignocellulosic plant material to sugar and aromatics. The Fuels Synthesis Division will create microbes that can efficiently convert sugar and aromatics into ethanol and other biofuels. JBEI's cross-cutting Technologies Division will develop and optimize a set of enabling technologies including high-throughput, chipbased, and omics platforms; tools for synthetic biology; multi-scale imaging facilities; and integrated data analysis to support and integrate JBEI's scientific program.

Blanch, Harvey; Adams, Paul; Andrews-Cramer, Katherine; Frommer, Wolf; Simmons, Blake; Keasling, Jay

2008-01-18T23:59:59.000Z

130

DOE Joint Genome Institute: A Microbiological "Template" for Mitigating  

NLE Websites -- All DOE Office Websites (Extended Search)

July 1, 2011 July 1, 2011 A Microbiological "Template" for Mitigating Methane Emissions WALNUT CREEK, Calif.-Carbon dioxide may be the most name-dropped greenhouse gas, but methane is 20 times more potent. In 2009, the U.S. Environmental Protection Agency calculated that 20 percent of the nation's human-related methane emissions were attributable to livestock digestive processes. In Australia, livestock emissions account for 12 percent of the country's total greenhouse gas emissions. Wallaby Photo:Wallaby, photo by Mehgan Murphy, Smithsonian's National Zoo. To understand how methane is produced in livestock, an international team of scientists including researchers at Australia's Commonwealth Scientific and Industrial Research Organisation (CSIRO) and the DOE JGI

131

DOE Joint Genome Institute: How Now, Inside the Cow: Nearly 30,000 Novel  

NLE Websites -- All DOE Office Websites (Extended Search)

January 27, 2011 January 27, 2011 How Now, Inside the Cow: Nearly 30,000 Novel Enzymes for Biofuel Production Improvements To download Cow Rumen data, go to: http://portal.nersc.gov/project/jgimg/CowRumenRawData/submission/ WALNUT CREEK, Calif.-Cows eat grass-this has been observed for eons. From this fibrous diet consisting mainly of the tough to degrade plant cell wall materials cellulose and hemicellulose, substances of no nutritional value to most animals, ruminants manage to extract all they need to nourish themselves, their progeny and their keepers. And now, the cow, or rather the network of organisms working unseen in the cow's forestomach or rumen, is providing researchers with vital information that may someday accelerate the large-scale deployment of biofuels. This will offer a

132

DOE Joint Genome Institute: Salt-loving Microbe Provides New Enzymes for  

NLE Websites -- All DOE Office Websites (Extended Search)

June 30, 2011 June 30, 2011 Salt-loving Microbe Provides New Enzymes for the Production of Next Gen Biofuels WALNUT CREEK, Calif.-In order to realize the full potential of advanced biofuels that are derived from non-food sources of lignocellulosic biomass-e.g., agricultural, forestry, and municipal waste, and crops such as poplar, switchgrass and miscanthus-new technologies that can efficiently and cost-effectively break down this biomass into simple sugars are required. Existing biomass pretreatment technologies are typically derived from the pulp and paper industry and rely on dilute acids and bases to break down the biomass. The treated biomass product is then exposed to biological catalysts, or enzymes, to liberate the sugars. Eddy Rubin and Tao Zhang Photo:Tao Zhang (left), and Eddy Rubin (right).

133

DOE Joint Genome Institute: Advancing Next Gen Biofuels by Turning Up the  

NLE Websites -- All DOE Office Websites (Extended Search)

October 2, 2011 October 2, 2011 Advancing Next Gen Biofuels by Turning Up the Heat on Biomass Pretreatment Processes WALNUT CREEK, Calif.-The nation's Renewable Fuels Standard calls for annual production of 36 billion gallons of biofuel by 2022. One of the biggest hurdles to achieving this goal lies in optimizing the multistep process involved in breaking down plant biomass and then converting it into fermentable sugars that can be refined into fuel for our transportation needs. To overcome this challenge, the U.S. Department of Energy supports several projects focused on identifying enzymes from fungi and microbes such as cellulases-that breakdown plant cell walls-and heat-tolerant industrial-strength host cell systems to drive these reactions. Photo: The thermophilic fungus M. thermophila

134

Video Presentations from the 2009 DOE Joint Genome Institute User Meeting  

DOE Data Explorer (OSTI)

•\tDiversity Generating Retroelements in Bacterial, Phage, and Plasmid Elements, Jeffrey Miller (UCLA) (36:11)

135

DOE Joint Genome Institute: Getting to the Root-Unearthing the  

NLE Websites -- All DOE Office Websites (Extended Search)

August 1, 2012 August 1, 2012 Getting to the Root- Unearthing the Plant-Microbe Quid Pro Quo While the flower may attract the bee and the admiring eye of the passerby, it is the unseen complex network of life below ground where the action is. The microbial community or microbiome that inhabits the rhizosphere and endosphere -the niches immediately surrounding and inside a plant's root-facilitates the shuttling of nutrients and information into and out of the roots within the soil matrix. This commerce, by enabling the plant to adapt to its immediate environment, contributes to plant health and growth, defense against pests, management of carbon and other elements for the enrichment of the soil, and even informs the plant's ability to sequester contaminants. These underground microbial activities have not

136

DOE Joint Genome Institute: Waves of Berkeley Lab Responders Deploy Omics  

NLE Websites -- All DOE Office Websites (Extended Search)

1, 2012 1, 2012 Waves of Berkeley Lab Responders Deploy Omics to Track Deepwater Horizon Oil Spill Cleanup Microbes In the aftermath of the Deepwater Horizon oil spill in the Gulf of Mexico two years ago, various strategies were deployed to prevent 4.9 million barrels of light crude oil from fouling the waters and reaching the shores. A team of Lawrence Berkeley National Laboratory (Berkeley Lab) researchers found that nature also played a role in the dispersal process as marine microbial communities responded to the oil plume that made its way from the wellhead at a depth of 5,000 feet to the surface of the water. "There was oil on the surface and oil below, but no oil in between," said microbial ecologist Terry Hazen, former head of the Ecology Department

137

Genomics of Energy and Environment, 2010: Video Presentations from the Fifth DOE Joint Genome Institute Annual User Meeting  

DOE Data Explorer (OSTI)

•\tThe Promise and Challenge of Producing Biofuel Feedstocks: An Ecological Perspective, Evan DeLucia

138

JGI - 2009 Genome Sequencing Targets  

NLE Websites -- All DOE Office Websites (Extended Search)

July 2, 2008 July 2, 2008 Pine Tree, Boat-Boring Bivalve "Bugs", Duck Weed, Oil-Producing Microalgae, Stinkbird Gut, 40 Others Top DOE Joint Genome Institute 2009 Genome Sequencing Targets WALNUT CREEK, CA-In the continuing effort to tap the vast, unexplored reaches of the earth's microbial and plant domains for bioenergy and environmental applications, the DOE Joint Genome Institute (DOE JGI) has announced its latest portfolio of DNA sequencing projects that it will undertake in the coming year. The 44 projects, culled from nearly 150 proposals received through the Community Sequencing Program (CSP), represent over 60 billion nucleotides of data to be generated through this biodiversity sampling campaign-roughly the equivalent of 20 human genomes. "The scientific and technological advances enabled by the information

139

Genomic Advances to Improve Biomass for Biofuels (LBNL Science at the Theater)  

DOE Green Energy (OSTI)

Lawrence Berkeley National Lab bioscientist Daniel Rokhsar discusses genomic advances to improve biomass for biofuels. He presented his talk Feb. 11, 2008 in Berkeley, California as part of Berkeley Lab's community lecture series. Rokhsar works with the U.S. Department of Energy's Joint Genome Institute and Berkeley Lab's Genomics Division.

Rokhsar, Daniel

2008-02-11T23:59:59.000Z

140

DOE JGI Secures Long-Term Lease on Production Genomics Facility  

NLE Websites -- All DOE Office Websites (Extended Search)

world's leading DNA sequencing centers in the DOE Joint Genome Institute," said Susan Rainey, Mayor of the City of Walnut Creek, Calif. "In our very own backyard, we can lay claim...

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


141

The Joint Institute for Strategic Energy Analysis is operated by the Alliance for Sustainable Energy, LLC, on behalf of the U.S. Department of Energy's  

E-Print Network (OSTI)

or transportation. The benefits generated by hybrid operation can include higher overall energy usage efficiencyThe Joint Institute for Strategic Energy Analysis is operated by the Alliance for Sustainable Energy, LLC, on behalf of the U.S. Department of Energy's National Renewable Energy Laboratory

142

Improving biofuel feedstocks by modifying xylan biosynthesis (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Jane Lau of the Joint BioEnergy Institute on "Improving biofuel feedstocks by modifying xylan biosynthesis" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

Lau, Jane [JBEI

2013-03-01T23:59:59.000Z

143

Microsoft PowerPoint - Microbial Genome and Metagenome Analysis Case Study (NERSC Workshop - May 7-8, 2009).ppt [Compatibility  

NLE Websites -- All DOE Office Websites (Extended Search)

Genome & Genome & Metagenome Analysis: Computational Challenges Natalia N. Ivanova * Nikos C. Kyrpides * Victor M. Markowitz ** * Genome Biology Program, Joint Genome Institute ** Lawrence Berkeley National Lab Microbial genome & metagenome analysis General aims Understand microbial life Apply to agriculture, bioremediation, biofuels, human health Specific aims include Specific aims include Predict biochemistry & physiology of organisms based on genome sequence Explain known biochemical & physiological properties Metabolic reconstruction * Ivanova & Lykidis (2009) Metabolic reconstruction. Encyclopedia of Microbiology, Elsevier: 607-621. 2 Genome sequence data size Now ~1,400 microbial genomes = 5.5 mil genes ~ 100 metagenomes samples

144

Genome Analyses and Supplement Data from the International Populus Genome Consortium (IPGC)  

DOE Data Explorer (OSTI)

The sequencing of the first tree genome, that of Populus, was a project initiated by the Office of Biological and Environmental Research in DOE’s Office of Science. The International Populus Genome Consortium (IPGC) was formed to help develop and guide post-sequence activities. The IPGC website, hosted at the Oak Ridge National Laboratory, provides draft sequence data as it is made available from DOE Joint Genome Institute, genome analyses for Populus, lists of related publications and resources, and the science plan. The data are available at http://www.ornl.gov/sci/ipgc/ssr_resource.htm.

International Populus Genome Consortium (IPGC)

145

Introduction to Metagenomics at DOE JGI: Program Overview and Program Informatics (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)  

Science Conference Proceedings (OSTI)

Susannah Tringe of the DOE Joint Genome Institute talks about the Program Overview and Program Informatics at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011

Tringe, Susannah [DOE JGI

2011-10-12T23:59:59.000Z

146

Algal Functional Annotation Tool from the DOE-UCLA Institute for Genomics and Proteomics  

DOE Data Explorer (OSTI)

The Algal Functional Annotation Tool is a bioinformatics resource to visualize pathway maps, identify enriched biological terms, or convert gene identifiers to elucidate biological function in silico. These types of analysis have been catered to support lists of gene identifiers, such as those coming from transcriptome gene expression analysis. By analyzing the functional annotation of an interesting set of genes, common biological motifs may be elucidated and a first-pass analysis can point further research in the right direction. Currently, the following databases have been parsed, processed, and added to the tool:

  • Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathways Database
  • MetaCyc Encyclopedia of Metabolic Pathways
  • Panther Pathways Database
  • Reactome Pathways Database
  • Gene Ontology
  • MapMan Ontology
  • KOG (Eukaryotic Clusters of Orthologous Groups)
  • Pfam
  • InterPro

Lopez, David

147

Opening Remarks from the Joint Genome Institute and Argonne Lab High Performance Computing Workshop (2010 JGI/ANL HPC Workshop)  

SciTech Connect

DOE JGI Director Eddy Rubin gives opening remarks at the JGI/Argonne High Performance Computing (HPC) Workshop on January 25, 2010.

Rubin, Eddy

2010-01-25T23:59:59.000Z

148

JGI Genomics and Bioinformatics for Undergraduate Educators Workshop |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

JGI Genomics and Bioinformatics for Undergraduate Educators JGI Genomics and Bioinformatics for Undergraduate Educators Workshop JGI Genomics and Bioinformatics for Undergraduate Educators Workshop March 23, 2013 3:00PM EDT to March 26, 2013 6:00PM EDT University of California The JGI will be holding the JGI Genomics and Bioinformatics for Undergraduate Educators Workshop in conjunction with the JGI User Meeting. The workshop will take place March 23-26, 2013 at the JGI. The DOE Joint Genome Institute's Education Program is providing opportunities for colleges and universities across the country to "interpret" bacterial genomes, such as those sequenced as part of the GEBA project, for analysis. This "Interpret a GEBA Genome" Education Program makes available a selection of recently sequenced genomes

149

DEVELOPMENT, INSTALLATION AND OPERATION OF THE MPC&A OPERATIONS MONITORING (MOM) SYSTEM AT THE JOINT INSTITUTE FOR NUCLEAR RESEARCH (JINR) DUBNA, RUSSIA  

Science Conference Proceedings (OSTI)

The Material Protection, Control and Accounting (MPC&A) Operations Monitoring (MOM) systems handling at the International Intergovernmental Organization - Joint Institute for Nuclear Research (JINR) is described in this paper. Category I nuclear material (plutonium and uranium) is used in JINR research reactors, facilities and for scientific and research activities. A monitoring system (MOM) was installed at JINR in April 2003. The system design was based on a vulnerability analysis, which took into account the specifics of the Institute. The design and installation of the MOM system was a collaborative effort between JINR, Brookhaven National Laboratory (BNL) and the U.S. Department of Energy (DOE). Financial support was provided by DOE through BNL. The installed MOM system provides facility management with additional assurance that operations involving nuclear material (NM) are correctly followed by the facility personnel. The MOM system also provides additional confidence that the MPC&A systems continue to perform effectively.

Kartashov,V.V.; Pratt,W.; Romanov, Y.A.; Samoilov, V.N.; Shestakov, B.A.; Duncan, C.; Brownell, L.; Carbonaro, J.; White, R.M.; Coffing, J.A.

2009-07-12T23:59:59.000Z

150

Complete genome sequence of Methanoculleus marisnigri type strain JR1  

SciTech Connect

Methanoculleus marisnigri Romesser et al. 1981 is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain, JR1, was isolated from anoxic sediments of the Black Sea. M. marisnigri is of phylogenetic interest because at the time the sequencing project began only one genome had previously been sequenced from the order Methanomicrobiales. We report here the complete genome sequence of M. marisnigri type strain JR1 and its annotation. This is part of a Joint Genome Institute 2006 Community Sequencing Program to sequence genomes of diverse Archaea.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Sieprawska-Lupa, Magdalena [University of Georgia, Athens, GA; Goltsman, Eugene [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Barry, Kerrie [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Brettin, Tom [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Hauser, Loren John [ORNL; Land, Miriam L [ORNL; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Whitman, W. B. [University of Georgia, Athens, GA; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute

2009-01-01T23:59:59.000Z

151

Complete genome sequence of Methanocorpusculum labreanum type strain Z  

Science Conference Proceedings (OSTI)

Methanocorpusculum labreanum is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain Z was isolated from surface sediments of Tar Pit Lake in the La Brea Tar Pits in Los Angeles, California. M. labreanum is of phylogenetic interest because at the time the sequencing project began only one genome had previously been sequenced from the order Methanomicrobiales. We report here the complete genome sequence of M. labreanum type strain Z and its annotation. This is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Sieprawska-Lupa, Magdalena [University of Georgia, Athens, GA; Goltsman, Eugene [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Barry, Kerrie [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Hauser, Loren John [ORNL; Land, Miriam L [ORNL; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Whitman, W. B. [University of Georgia, Athens, GA; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute

2009-01-01T23:59:59.000Z

152

Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic Bacterium Marinitoga piezophila KA3  

Science Conference Proceedings (OSTI)

Marinitoga piezophila KA3 is a thermophilic, anaerobic, chemoorganotrophic, sulfur-reducing bacterium isolated from the Grandbonum deep-sea hydrothermal vent site at the East Pacific Rise (13 degrees N, 2,630-m depth). The genome of M. piezophila KA3 comprises a 2,231,407-bp circular chromosome and a 13,386-bp circular plasmid. This genome was sequenced within Department of Energy Joint Genome Institute CSP 2010.

Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Han, James [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Teshima, Hazuki [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Vannier, Pauline [Ifremer, Plouzane, France; Oger, Phil [University of Lyon, France; Bartlett, Douglas [University of California, San Diego & La Jolla; Noll, Kenneth M [University of Connecticut, Storrs; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Jebbar, Mohamed [Ifremer, Plouzane, France

2012-01-01T23:59:59.000Z

153

Plethodontid salamander mitochondrial genomics: A parsimony evaluation of character conflict and implications for historical biogeography  

E-Print Network (OSTI)

Mitochondrial DNA; Genomics; Biogeography; Appalachia. 1.salamander mitochondrial genomics: A parsimony evaluation of1,2 Department of Evolutionary Genomics, DOE Joint Genome

Macey, J. Robert

2005-01-01T23:59:59.000Z

154

Genomic Speciation and Adaptation in Aquilegia (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Scott Hodges of the University of California, Santa Barbara gives a presentation on "Genomic Speciation and Adaptation in Aquilegia" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Hodges, Scott [University of California, Santa Barbara

2011-03-23T23:59:59.000Z

155

Genomics of Extinct and Endangered Species (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Stephen Shuster of Penn State University gives a presentation on "Genomics of Extinct and Endangered Species" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Shuster, Stephen [Penn State University

2011-03-23T23:59:59.000Z

156

JGI CSP Delivers First Moss Genome  

NLE Websites -- All DOE Office Websites (Extended Search)

13, 2007 13, 2007 DOE JGI Community Sequencing Program Delivers First Moss Genome WALNUT CREEK, CA--Messages from nearly a half-billion years ago, conveyed via the inventory of genes sequenced from a present-day moss, provide clues about the earliest colonization of dry land by plants. The U.S. Department of Energy Joint Genome Institute (DOE JGI) was among the leaders of an international effort uniting more than 40 institutions to complete the first genome sequencing project of a nonvascular land plant, the moss Physcomitrella patens. The team's insights into the code that enabled this seminal emergence and dominance of land by plants are published December 13 online in Science Express. Scanning electron micrograph of Physcomitrella patens gametophores (moss shoots).

157

Genomic Science | U.S. DOE Office of Science (SC)  

NLE Websites -- All DOE Office Websites (Extended Search)

Biological Biological Systems Science Division (BSSD) » Genomic Science Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building

158

Complete genome sequence of Ferroglobus placidus AEDII12DO  

Science Conference Proceedings (OSTI)

Ferroglobus placidus belongs to the order Archaeoglobales within the archaeal phylum Euryar- chaeota. Strain AEDII12DO is the type strain of the species and was isolated from a shallow marine hydrothermal system at Vulcano, Italy. It is a hyperthermophilic, anaerobic chemoli- thoautotroph, but it can also use a variety of aromatic compounds as electron donors. Here we describe the features of this organism together with the complete genome sequence and anno- tation. The 2,196,266 bp genome with its 2,567 protein-coding and 55 RNA genes was se- quenced as part of a DOE Joint Genome Institute Laboratory Sequencing Program (LSP) project.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Risso, Carla [University of Massachusetts, Amherst; Holmes, Dawn [University of Massachusetts, Amherst; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Thomas S [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Lovley, Derek [University of Massachusetts, Amherst; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

159

Complete genome sequence of Staphylothermus hellenicus P8T  

SciTech Connect

Staphylothermus hellenicus belongs to the order Desulfurococcales within the archaeal phy- lum Crenarchaeota. Strain P8T is the type strain of the species and was isolated from a shal- low hydrothermal vent system at Palaeochori Bay, Milos, Greece. It is a hyperthermophilic, anaerobic heterotroph. Here we describe the features of this organism together with the com- plete genome sequence and annotation. The 1,580,347 bp genome with its 1,668 protein- coding and 48 RNA genes was sequenced as part of a DOE Joint Genome Institute (JGI) La- boratory Sequencing Program (LSP) project.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Wirth, Reinhard [Universitat Regensburg, Regensburg, Germany; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Davenport, Karen W. [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

160

Rhodopseudomonas palustris genome project. Final report  

DOE Green Energy (OSTI)

Rhodopseudomonas palustris is a common soil and water bacterium that makes its living by converting sunlight to cellular energy and by absorbing atmospheric carbon dioxide and converting it to biomass. This microbe can also degrade and recycle components of the woody tissues of plants, wood being the most abundant polymer on earth. Because of its intimate involvement in carbon management and recycling, R. palustris was selected by the DOE Carbon Management Program to have its genome sequenced by the Joint Genome Institute (JGI). This award provided funds for the preparation of R. palustris genomic DNA which was then supplied to the JGI in sufficient amounts to enable the complete sequencing of the R. palustris genome. The PI also supplied the JGI with technical information about the molecular biology of R. palustris.

Harwood, Caroline S.

2000-11-22T23:59:59.000Z

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


161

Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b  

Science Conference Proceedings (OSTI)

Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physicochemical gradient. This genome was sequenced to be a comparative resource for the study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy s (DOE s) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

Vishnivetskaya, T. [University of Tennessee, Knoxville (UTK); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L [ORNL; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Tom [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Kathariou, Sophia [North Carolina State University; Ramaley, Robert F. [University of Nebraska Medical Center; Rodrigues, Debora F. [University of Houston, Houston; Hendrix, Christie [Yellowstone National Park; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; Tiedje, James M. [Michigan State University, East Lansing

2011-01-01T23:59:59.000Z

162

Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b  

Science Conference Proceedings (OSTI)

Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physico-chemical gradient. This genome was sequenced to be a comparative resource for study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy's (DOE) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

Vishnivetskaya, T. [University of Tennessee, Knoxville (UTK); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Thomas S [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Kathariou, Sophia [North Carolina State University; Ramaley, Robert F. [University of Nebraska Medical Center; Rodrigues, Debora F. [University of Houston, Houston; Hendrix, Christie [Yellowstone National Park; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; Tiedje, James M. [Michigan State University, East Lansing

2011-01-01T23:59:59.000Z

163

Complete genome sequence of Halopiger xanaduensis type strain (SH6T)  

SciTech Connect

Halopiger xanaduensis is the type species of the genus Halopiger and belongs to the euryarchaeal family Halobacteriaceae. H. xanaduensis strain SH-6, which is designated as the type strain, was isolated from the sediment of a salt lake in Inner Mongolia, Lake Shangmatala. Like other members of the family Halobacteriaceae, it is an extreme halophile requiring at least 2.5 M salt for growth. We report here the sequencing and annotation of the 4,355,268 bp genome, which includes one chromosome and three plasmids. This genome is part of a Joint Genome Institute (JGI) Community Sequencing Program (CSP) project to sequence diverse haloarchaeal genomes.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Tindall, Brian [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Han, James [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Teshima, Hazuki [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

164

Genomics of Plant-based Biofuels in the Journal Nature  

NLE Websites -- All DOE Office Websites (Extended Search)

3, 2008 3, 2008 DOE JGI Director Eddy Rubin Highlights the Genomics of Plant-based Biofuels in the Journal Nature WALNUT CREEK, CA-Genomics is accelerating improvements for converting plant biomass into biofuel-as an alternative to fossil fuel for the nation's transportation needs, reports Eddy Rubin, Director of the U.S. Department of Energy Joint Genome Institute (DOE JGI), in the August 14 edition of the journal Nature. In "Genomics of cellulosic biofuels," Rubin lays out a path forward for how emerging genomic technologies will contribute to a substantially different biofuels future as compared to the present corn-based ethanol industry-and in part mitigate the food-versus-fuel debate. The Nature Review is available for download (by subscription) at http://www.nature.com/.

165

ZipperDB: Predictions of Fibril-forming Segments within Proteins Identified by the 3D Profile Method (from the UCLA-DOE Institute for Genomics and Proteomics)  

DOE Data Explorer (OSTI)

ZipperDB contains predictions of fibril-forming segments within proteins identified by the 3D Profile Method. The UCLA-DOE Institute for Genomics and Proteomics has analyzed over 20,000 putative protein sequences for segments with high fibrillation propensity that could form a "steric zipper"ùtwo self-complementary beta sheets, giving rise to the spine of an amyloid fibril. The approach is unique in that structural information is used to evaluate the likelihood that a particular sequence can form fibrils. [copied with edits from http://www.doe-mbi.ucla.edu/]. In addition to searching the database, academic and non-profit users may also submit their protein sequences to the database.

Goldschmidt, L.; Teng, P.K.; Riek, R.; Eisenberg, D.

166

Genomic and Systems Biology Analyses of Social Behavior or Evolutionary Genomic Analyses of Insect Society: Eat, Drink, and Be Scary (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gene Robinson of the University of Illinois on "Genomic and Systems Biology Analyses of Social Behavior" at the 6th Annual Genomics of Energy & Environment Meeting on March 23, 2011

Robinson, Gene

2011-03-23T23:59:59.000Z

167

Pacific Northwest National Laboratory The Joint Global Change  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Pacific Northwest Pacific Northwest National Laboratory The Joint Global Change The Joint Global Change Research Institute Research Institute Nuclear Power and Stabilizing CO 2 Concentrations Jae Edmonds and Sonny Kim Nuclear Energy Research Advisory Committee Meeting April 15 and 16, 2002 Alexandria, VA Pacific Northwest National Laboratory 2 The Joint Global Change The Joint Global Change Research Institute Research Institute CLIMATE CHANGE Pacific Northwest National Laboratory 3 The Joint Global Change The Joint Global Change Research Institute Research Institute CLIMATE CHANGE Multiple gases * CO 2 (fossil fuel, land-use) * CH 4 (rice paddies, ruminant livestock, landfills, coal mining, oil and gas production, incomplete combustion) * N 2 O (nitrogen fertilizers, industrial processes, other??)

168

PNNL: About PNNL - Institutional Partnerships  

NLE Websites -- All DOE Office Websites (Extended Search)

whom we engage at the institutional level, inviting them to provide input into the Laboratory strategy. Joint Appointments To enable long term strategic collaborations with...

169

Association Genetics of Populus trichocarpa or Resequencing in Populus: Towards Genome Wide Association Genetics (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gerry Tuskan of Oak Ridge National Laboratory on "Resequencing in Populus: Towards Genome Wide Association Genetics" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Tuskan, Gerry

2011-03-23T23:59:59.000Z

170

Joint popping  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint popping Name: danb Status: NA Age: NA Location: NA Country: NA Date: Around 1993 Question: Why do your joints pop? For example, when I am walking my ankle always makes a...

171

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes  

E-Print Network (OSTI)

for Broad Institute Genome Sequencing and Analysis Programsequenced by the Mouse Genome Sequencing Consortium [49] andto the Chimp Genome Sequencing Consortium 2.1/panTro2

2013-01-01T23:59:59.000Z

172

Ceramic joints  

DOE Patents (OSTI)

Butt joints between materials having different coefficients of thermal expansion are prepared having a reduced probability of failure of stress facture. This is accomplished by narrowing/tapering the material having the lower coefficient of thermal expansion in a direction away from the joint interface and not joining the narrow-tapered surface to the material having the higher coefficient of thermal expansion.

Miller, Bradley J. (Worcester, MA); Patten, Jr., Donald O. (Sterling, MA)

1991-01-01T23:59:59.000Z

173

Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)  

SciTech Connect

Chromohalobacter salexigens is one of nine currently known species of the genus Chromoha- lobacter in the family Halomonadaceae. It is the most halotolerant of the so-called mod- erately halophilic bacteria currently known and, due to its strong euryhaline phenotype, it is an established model organism for prokaryotic osmoadaptation. C. salexigens strain 1H11T and Halomonas elongata are the first and the second members of the family Halomonada- ceae with a completely sequenced genome. The 3,696,649 bp long chromosome with a total of 3,319 protein-coding and 93 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2004.

Copeland, A [U.S. Department of Energy, Joint Genome Institute; O'Connor, Kathleen [Purdue University; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Berry, Kerrie W. [United States Department of Energy Joint Genome Institute; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Vargas, Carmen [University of Seville; Nieto, Joaquin J. [University of Seville; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Csonka, Laszlo N. [Purdue University; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

174

Institute for Advanced Studies  

NLE Websites -- All DOE Office Websites (Extended Search)

Institute for Advanced Studies Institute for Advanced Studies Institute for Advanced Studies NMC leverages the strengths of three research universities to build joint programs, develop strategic partnerships, provide common organization and facilities. Contact Leader TBD LANL Program Administrator Pam Hundley (505) 663-5453 Email Building regional partnerships in education, leveraging strengths of three research universities The Institute for Advanced Studies (IAS) works with the three New Mexico research universities (University of New Mexico, New Mexico Tech, and New Mexico State University) to develop research and educational collaborations and partnerships. To facilitate interactions between the universities and LANL, the three New Mexico schools established the New Mexico Consortium (NMC), a nonprofit

175

CI Announces Globus Genomics | Argonne National Laboratory  

NLE Websites -- All DOE Office Websites (Extended Search)

CI Announces Globus Genomics April 9, 2013 Tweet EmailPrint The ArgonneUniversity of Chicago Computation Institute has announced a new sequencing analysis service called Globus...

176

Soybean Rust, A Rising Star in Phytopathology  

E-Print Network (OSTI)

by Christine Stone Genome Sequencing Project Funded by theUS DOE Joint Genome Institute Sequencing at JGI Library (DOE Joint Genome Institute Fosmid sequencing Random fosmids

Posada-Buitrago, Martha Lucia

2005-01-01T23:59:59.000Z

177

Roya de la Soja: Una Nueva Amenaza  

E-Print Network (OSTI)

USDA-ARS-ERRC ) GENOME SEQUENCING PROJECT PhakopsoraUS DOE Joint Genome Institute DNA sequencing process LibraryUS DOE Joint Genome Institute DNA sequencing process Rolling

Posada-Buitrago, Martha Lucia

2005-01-01T23:59:59.000Z

178

NERSC and JGI Join Forces to Tackle Genomics HPC - NERSC Center News, Apr  

NLE Websites -- All DOE Office Websites (Extended Search)

NERSC and JGI Join NERSC and JGI Join Forces to Tackle Genomics HPC NERSC and JGI Join Forces to Tackle Genomics HPC April 19, 2010 A torrent of data has been flowing from the advanced sequencing platforms at the Department of Energy Joint Genome Institute (JGI), among the world's leading generators of DNA sequence information for bioenergy and environmental applications. Last year, JGI generated over one trillion nucleotide letters of genetic code for its various user programs, an eight-fold increase in productivity from 2008. This year JGI expects to sequence five-times more data than the previous year, producing more than a petabyte of data. Kathy Yelick and Eddy Rubin in front of Cray XT5 supercomputer NERSC Division Director Kathy Yelick (left) and JGI Director Eddy Rubin

179

Diatom Genome Helps Explain Their Great Diversity and Success in Trapping  

NLE Websites -- All DOE Office Websites (Extended Search)

5, 2008 5, 2008 Diatom Genome Helps Explain Their Great Diversity and Success in Trapping Excess Carbon in Oceans WALNUT CREEK, CA-Diatoms, mighty microscopic algae, have profound influence on climate, producing 20 percent of the oxygen we breathe by capturing atmospheric carbon and in so doing, countering the greenhouse effect. Since their evolutionary origins these photosynthetic wonders have come to acquire advantageous genes from bacterial, animal and plant ancestors enabling them to thrive in today's oceans. These findings, based on the analysis of the latest sequenced diatom genome, Phaeodactylum tricornutum, are published in 15 October edition of the journal Nature by an international team of researchers led by the U.S. Department of Energy Joint Genome Institute (DOE JGI) and the Ecole Normale Supérieure of

180

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)  

SciTech Connect

Desulfotomaculum ruminis Campbell and Postgate 1965 is a member of the large genus Desulfotomaculum which contains 30 species and is contained in the family Peptococcaceae. This species is of interest because it represents one of the few sulfate- reducing bacteria that have been isolated from the rumen. Here we describe the features of D. ruminis together with the complete genome sequence and annotation. The 3,969,014 bp long chromosome with a total of 3,901 protein-coding and 85 RNA genes is the second completed genome sequence of a type strain of the genus Desulfotomaculum to be pub- lished, and was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program 2009.

Spring, Stefan [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Visser, Michael [Wageningen University and Research Centre, The Netherlands; Lu, Megan [Los Alamos National Laboratory (LANL); Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Larimer, Frank W [ORNL; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Schaap, Peter J [Wageningen University and Research Centre, The Netherlands; Plugge, Caroline M. [Wageningen University and Research Centre, The Netherlands; Muyzer, Gerard [Universitate Amsterdam; Kuever, Jan [Bremen Institute for Materials Testing, Bremen, Germany; Pereira, Ines A. C. [Universidade Nova de Lisboa, Oeiras, Portugal; Parshina, Sofiya N. [Russian Academy of Sciences, Moscow; Bernier-Latmani, Rizlan [Ecole Polytechnique Federale de Lausanne, Switzerland; Stams, Alfons J. M. [Wageningen University and Research Centre, The Netherlands; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

2012-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


181

Joint Announcement  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Announcement Announcement Hurricane Relief on Federal Research Awards Updated October 5, 2005 Federal research agencies, the Office of Management and Budget (OMB), and the Office of Science and Technology Policy are coordinating activities with institutions and individuals in the Gulf region to restore the high quality of research, research training, and science education supported by Federal grants and other assistance awards. Some of the most important actions that can be taken to address resumption of research activities and to address critical research resources are being dealt with on a project by project basis. Individuals who have not been able contact their institution or organization are encouraged to do so, or to check their institution's

182

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Useful Links Useful Links Argonne National Laboratory Accelerator Sites Conferences Advanced Photon Source (APS) Argonne Wakefield Accelerator (AWA) Argonne Tandem Linear Accelerator System (ATLAS) High Energy Physics Division RIA (????) Link to JACoW (Joint Accelerator Conferences Website) Fermi National Accelerator Laboratory Fermilab-Argonne Collaboration Accelerator Physics Center Workshops Other Accelerator Institutes Energy Recovering Linacs Center for Advance Studies of Accelerators (Jefferson Labs) Center for Beam Physics (LBNL) Accelerator Test Facility (BNL) The Cockcroft Institute (Daresbury, UK) John Adams Institute (Rutherford, UK) ERL2009 to be held at Cornell ERL2007 ERL2005 DOE Laboratory with Accelerators Fermilab Stanford Linear Accelerator Center Brookhaven National Laboratory

183

Berkeley Lab A to Z Index: J  

NLE Websites -- All DOE Office Websites (Extended Search)

JBEI: Joint BioEnergy Institute JCAP: Joint Center for Artificial Photosynthesis JDEM: The Joint Dark Energy Mission JGI: Department of Energy Joint Genome Institute JHA...

184

Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control  

E-Print Network (OSTI)

divergent eukaryote. BMC Genomics 2004, 5: 79. 118. Peixotoet al. : Comparative genomics of the pathogenic ciliateand Environmental Genomics, J Craig Venter Institute, 9704

2011-01-01T23:59:59.000Z

185

WIPP - Joint Information Center  

NLE Websites -- All DOE Office Websites (Extended Search)

The Joint Information Center is located at 4021 National Parks Highway in Carlsbad, N.M. Joint Information Center In the unlikely event of an emergency, the WIPP Joint Information...

186

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation  

SciTech Connect

Background: The emergence of next generation sequencing (NGS) has provided the means for rapid and high throughput sequencing and data generation at low cost, while concomitantly creating a new set of challenges. The number of available assembled microbial genomes continues to grow rapidly and their quality reflects the quality of the sequencing technology used, but also of the analysis software employed for assembly and annotation. Methodology/Principal Findings: In this work, we have explored the quality of the microbial draft genomes across various sequencing technologies. We have compared the draft and finished assemblies of 133 microbial genomes sequenced at the Department of Energy-Joint Genome Institute and finished at the Los Alamos National Laboratory using a variety of combinations of sequencing technologies, reflecting the transition of the institute from Sanger-based sequencing platforms to NGS platforms. The quality of the public assemblies and of the associated gene annotations was evaluated using various metrics. Results obtained with the different sequencing technologies, as well as their effects on downstream processes, were analyzed. Our results demonstrate that the Illumina HiSeq 2000 sequencing system, the primary sequencing technology currently used for de novo genome sequencing and assembly at JGI, has various advantages in terms of total sequence throughput and cost, but it also introduces challenges for the downstream analyses. In all cases assembly results although on average are of high quality, need to be viewed critically and consider sources of errors in them prior to analysis. Conclusion: These data follow the evolution of microbial sequencing and downstream processing at the JGI from draft genome sequences with large gaps corresponding to missing genes of significant biological role to assemblies with multiple small gaps (Illumina) and finally to assemblies that generate almost complete genomes (Illumina+PacBio).

Mavromatis, K [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Brettin, Thomas S [ORNL; Quest, Daniel J [ORNL; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Clum, Alicia [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Cottingham, Robert W [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

187

Genomics of Climate Resilience (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Eldredge Bermingham of the Smithsonian Tropical Research Institute-Panama on "Genomics of climate resilience" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Bermingham, Eldredge [STRI-Panama

2013-03-27T23:59:59.000Z

188

Complete genome sequence of Tolumonas auensis type strain (TA 4T)  

Science Conference Proceedings (OSTI)

Tolumonas auensis Fischer-Romero et al. 1996 is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Oth- er than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4T is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292 bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008.

Chertkov, Olga [Los Alamos National Laboratory (LANL); Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Berry, Alison M [California Institute of Technology, University of California, Davis; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Spring, Stefan [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Beller, Harry R. [Lawrence Berkeley National Laboratory (LBNL); Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

189

Complete genome sequence of Tolumonas auensis type strain (TA 4T)  

Science Conference Proceedings (OSTI)

Tolumonas auensis (Fischer-Romero et al. 1996) is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Other than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4T is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292-bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008.

Chertkov, Olga; Copeland, Alex; Lucas1, Susa; Lapidus, Alla; Berry, KerrieW.; Detter, JohnC.; Glavina Del Rio, Tijana; Hammon, Nancy; Dalin, Eileen; Tice, Hope; Pitluck, Sam; Richardson, Paul; Bruce, David; Goodwin, Lynne; Han, Cliff; Tapia, Roxanne; Saunders, Elizabeth; Schmutz, Jeremy; Brettin, Thomas; Larimer, Frank; Land, Miriam; Hauser, Loren; Spring, Stefan; Rohde, Manfred; Kyrpides, NikosC.; Ivanova, Natalia; Göker, Markus; Beller, HarryR.; Klenk, Hans-Peter; Woyke, Tanja

2011-10-04T23:59:59.000Z

190

Low Dose Radiation Research Program: Genomic Instability and...  

NLE Websites -- All DOE Office Websites (Extended Search)

Genomic Instability and Low Dose Low Dose Rate Radiation. Authors: Lei Huang, Suzanne Grim, William F. Morgan Institutions: University of Maryland. Humans will always receive...

191

Functional Genomics | VIMSS - Virtual Institute for Microbial...  

NLE Websites -- All DOE Office Websites (Extended Search)

Cloning of Identified Pathways Cloning of Identified Pathways Diversa Corporation will apply a combination of advanced technologies, including large DNA insert cloning, biopanning,...

192

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations  

Science Conference Proceedings (OSTI)

Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006.

Bollmann, Annette [Miami University, Oxford, OH; Sedlacek, Christopher J [Miami University, Oxford, OH; Laanbroek, Hendrikus J [Netherlands Institute of Ecology (NIOO-KNAW); Suwa, Yuichi [Chuo University, Tokyo, Japan; Stein, Lisa Y [University of California, Riverside; Klotz, Martin G [University of Louisville, Louisville; Arp, D J [Oregon State University; Sayavedra-Soto, LA [Oregon State University; Lu, Megan [Los Alamos National Laboratory (LANL); Bruce, David [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Tapia, Roxanne [Los Alamos National Laboratory (LANL); Han, James [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Pennacchio, Len [U.S. Department of Energy, Joint Genome Institute; Nolan, Matt [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Huntemann, Marcel [U.S. Department of Energy, Joint Genome Institute; Deshpande, Shweta [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Chen, Amy [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Mavromatis, K [U.S. Department of Energy, Joint Genome Institute; Markowitz, Victor [U.S. Department of Energy, Joint Genome Institute; Szeto, Ernest [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL)

2013-01-01T23:59:59.000Z

193

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Mission Mission The mission of the Argonne Accelerator Institute is centered upon the following related goals: Locate next generation accelerator facilities in Northern Illinois Advance accelerator technology Oversee a selected, strategic, lab-wide, and acclaimed accelerator R&D portfolio In order to accomplish the above goals, the institute has established five objectives. These are coupled to programmatic objectives, and are dependent on each other, but they serve to identify important areas for the institute to focus its activities. Educate the "next generation" of accelerator physicists and engineers Work with area Universities to establish Joint Appointments and Adjunct Professorships Identify students Provide research opportunities at Argonne Work with the US Particle Accelerator School

194

Some Results of Joint Measurements of Aerosol Extinction of Solar...  

NLE Websites -- All DOE Office Websites (Extended Search)

Results of Joint Measurements of Aerosol Extinction of Solar Radiation on Horizontal and Slant Paths S. M. Sakerin, D. M. Kabanov, Yu. A. Pkhalagov, and V. N. Uzhegov Institute of...

195

Joint Announcement | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Announcement Joint Announcement Joint Announcement More Documents & Publications Comparing the Impacts of the 2005 and 2008 Hurricanes on U.S. Energy Infrastructure -...

196

PNNL: About PNNL - Joint Appointments  

NLE Websites -- All DOE Office Websites (Extended Search)

Yong Wang WSUPNNL Joint Appointee Yong Wang Named Fellow of American Chemical Society. Read the Full Article Joint Appointments The Joint Appointment Program is one means of...

197

Large displacement spherical joint  

DOE Patents (OSTI)

A new class of spherical joints has a very large accessible full cone angle, a property which is beneficial for a wide range of applications. Despite the large cone angles, these joints move freely without singularities.

Bieg, Lothar F. (Albuquerque, NM); Benavides, Gilbert L. (Albuquerque, NM)

2002-01-01T23:59:59.000Z

198

Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T)  

Science Conference Proceedings (OSTI)

Saccharomonospora azurea Runmao et al. 1987 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonosoras are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist and over-heated grain, where they might play a role in the primary degradation of plant material by attacking hemicellulose. They are Gram-negative staining organisms classified among the usually Gram-positive actinomycetes. Next to S. viridis, S. azurea is only the second member in the genus Saccharomonospora for with a completely sequenced type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence with project status 'permanent draft', and annotation. The 4,763,832 bp long chromosome with its 4,472 protein-coding and 58 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Held, Brittany [Los Alamos National Laboratory (LANL); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Brambilla, Evelyne-Marie [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

199

Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)  

SciTech Connect

Saccharomonospora marina Liu et al. 2010 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive staining, non-acid fast, and classify among the actinomycetes. Next to S. viridis and S. azurea, S. marina is the third member in the genus Saccharomonospora for with a completely sequenced (permanent draft status) type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Lu, Megan [Los Alamos National Laboratory (LANL); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Brambilla, Evelyne-Marie [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Li, Wen-Jun [Yunnan University, Kunming, China; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

200

Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon  

E-Print Network (OSTI)

The Joint Genome Institute’s Sorghum biocolor genome page. [T, Poliakov A, et al: The Sorghum bicolor genome and themonocotyledonous model) and Sorghum bicolor (sorghum). We

Tyler, Ludmila; Bragg, Jennifer N; Wu, Jiajie; Yang, Xiaohan; Tuskan, Gerald A; Vogel, John P

2010-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


201

Interoperability requirements for a South African joint command and control test facility  

Science Conference Proceedings (OSTI)

The South African National Defence Force is in the process of establishing a Joint Command and Control Test Facility at a National Research Institute. The goal with this facility is to provide an integrated environment for Joint Command and Control doctrine ... Keywords: architectures, interoperability requirements, joint command & control, service-orientated architectures, test facility

Willem H. le Roux

2008-06-01T23:59:59.000Z

202

Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park  

DOE Green Energy (OSTI)

Paenibacillus speciesY412MC10 was one of a number of organisms initially isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA. The isolate Y412MC10 was initially classified as a Geobacillus sp. based on its isolation conditions and similarity to other organisms isolated from hot springs at Yellowstone National Park. Comparison of 16 S rRNA sequences within the Bacillales indicated that Geobacillus sp.Y412MC10 clustered with Paenibacillus species and not Geobacillus; the 16S rRNA analysis indicated the organism was a strain of Paenibacillus lautus. Lucigen Corp. prepared genomic DNA and the genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute. The genome of Paenibacillus lautus strain Y412MC10 consists of one circular chromosome of 7,121,665 bp with an average G+C content of 51.2%. The Paenibacillus sp.Y412MC10 genome sequence was deposited at the NCBI in October 2009 (NC{_}013406). Comparison to other Paenibacillus species shows the organism lacks nitrogen fixation, antibiotic production and social interaction genes reported in other Paenibacilli. Over 25% of the proteins predicted by the Y412MC10 genome share no identity with the closest sequenced Paenibacillus species; most of these are predicted hypothetical proteins and their specific function in the environment is unknown.

Mead, David [University of Wisconsin, Madison; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Chertkov, Olga [Los Alamos National Laboratory (LANL); Zhang, Xiaojing [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Chang, Yun-Juan [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Brumm, Catherine [United States Department of Energy Joint Genome Institute; Hochstein, Rebecca [Lucigen Corporation, Middleton, Wisconsin; Schoenfeld, Thomas [Lucigen Corporation, Middleton, Wisconsin; Brumm, Phillip [University of Wisconsin, Madison

2012-01-01T23:59:59.000Z

203

Engineering Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Engineering Institute Engineering Institute Engineering Institute Engineering dynamics that include flight, vibration isolation for precision manufacturing, earthquake engineering, blast loading, signal processing, and experimental model analysis. Contact Leader, LANL Charles Farrar Email Leader, UCSD Michael Todd Email LANL Program Administrator Jutta Kayser (505) 663-5649 Email Collaboration for conducting mission-driven, multidisciplinary engineering research and recruiting, revitalization, and retention of current & future staff The Engineering Institute is a collaboration between LANL and the University of California at San Diego (UCSD) Jacobs School of Engineering, whose mission is to develop a comprehensive approach for conducting mission-driven, multidisciplinary engineering research

204

New Approaches and Technologies to Sequence de novo Plant reference Genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Jeremy Schmutz of the HudsonAlpha Institute for Biotechnology on "New approaches and technologies to sequence de novo plant reference genomes" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Schmutz, Jeremy [HudsonAlpha Institute

2013-03-01T23:59:59.000Z

205

Molluscan Evolutionary Genomics  

E-Print Network (OSTI)

Today’s high-throughput genome sequencing centers lack thecomplete nuclear genome sequencing, with several mollusksparticipation. The cost of genome sequencing is still very

Simison, W. Brian

2010-01-01T23:59:59.000Z

206

JGI Fungal Genomics Program  

E-Print Network (OSTI)

View Supports functional genomics, user data deposition andJGI Fungal Genomics Program Igor V. Grigoriev 1 DOE Jointof California. JGI Fungal Genomics Program Contact: Igor

Grigoriev, Igor V.

2011-01-01T23:59:59.000Z

207

JGI Fungal Genomics Program  

E-Print Network (OSTI)

JGI Fungal Genomics Program Igor V. Grigoriev 1 Lawrenceof California. JGI Fungal Genomics Program Contact: IgorJGI). Its key project, the Genomics Encyclopedia of Fungi,

Grigoriev, Igor V.

2012-01-01T23:59:59.000Z

208

Weather and Joints  

NLE Websites -- All DOE Office Websites (Extended Search)

Humidity and air pressure changes, which accompany changes in weather, can sometimes be felt in the human body, some people are affected more than others. Arthritis in joints...

209

Comments of the Joint Center for Political and Economic Studies |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Center for Political and Economic Studies Joint Center for Political and Economic Studies Comments of the Joint Center for Political and Economic Studies The Media and Technology Institute and the Climate Change Initiative at the Joint Center for Political and Economic Studies ("Joint Center")1 respectfully submit these comments in response to the United States Department of Energy's ("DoE") Request for Information regarding its implementation of the Smart Grid provisions of Federal Communications Commission's ("FCC") National Broadband Plan. Comments of the Joint Center for Political and Economic Studies More Documents & Publications Re: NBP RFI: Data Access Implementing the National Broadband Plan by Empowering Consumers and the Smart Grid: Data Access, Third Party Use, and Privacy- Request for

210

Institutional Controls  

NLE Websites -- All DOE Office Websites (Extended Search)

Institutional Controls Institutional Controls Many major Federal laws (e.g., Atomic Energy Act (AEA), Resource Conservation Recovery Act (RCRA), Comprehensive Environmental Response, Compensation and Liability Act (CERCLA)), Executive Orders, regulations and various other drivers influence the use of institutional controls at DOE sites. Some drivers directly authorize or require the use of institutional controls, while others do not. DOE also uses institutional controls when no specific statutory requirement exists to supplement active remediation, pollution control, public and resource protection, and physical security, or to bolster the integrity of engineered remedies. DOE and its predecessor agencies have conducted activities for over 50 years, using land ownership and access control, environmental monitoring and surveillance, and other tools to support protection efforts at operational and inactive facilities, including radioactive waste burial grounds.

211

Proceedings of 2009 KEPRI-EPRI Joint Superconductivity Conference  

Science Conference Proceedings (OSTI)

The Electric Power Research Institute (EPRI) and Korea Electric Power Research Institute (KEPRI) held the 2009 KEPRI-EPRI Joint Superconductivity Conference on November 1618, 2009 in Daejeon, Korea at KEPRIs facilities. The conference was the ninth in EPRIs series of annual superconductivity conferences. KEPRI, which is the research center of Korea Electric Power Corporation, cosponsored the event with EPRIs Superconductivity Program. The Korea Institute of Applied Superconductivity and Cryogenics was th...

2010-02-25T23:59:59.000Z

212

Articular human joint modelling  

Science Conference Proceedings (OSTI)

The work reported in this paper encapsulates the theories and algorithms developed to drive the core analysis modules of the software which has been developed to model a musculoskeletal structure of anatomic joints. Due to local bone surface and contact ... Keywords: 6DOF, Joint Modelling, Software, Tissue wrapping, bilateral, constraints, forced contact based articulation, unilateral

Ibrahim i. Esat; Neviman Ozada

2010-03-01T23:59:59.000Z

213

Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum  

Science Conference Proceedings (OSTI)

Undergraduate life sciences education needs an overhaul, as clearly described in the National Research Council of the National Academies publication BIO 2010: Transforming Undergraduate Education for Future Research Biologists. Among BIO 2010's top recommendations is the need to involve students in working with real data and tools that reflect the nature of life sciences research in the 21st century. Education research studies support the importance of utilizing primary literature, designing and implementing experiments, and analyzing results in the context of a bona fide scientific question in cultivating the analytical skills necessary to become a scientist. Incorporating these basic scientific methodologies in undergraduate education leads to increased undergraduate and post-graduate retention in the sciences. Toward this end, many undergraduate teaching organizations offer training and suggestions for faculty to update and improve their teaching approaches to help students learn as scientists, through design and discovery (e.g., Council of Undergraduate Research [www.cur.org] and Project Kaleidoscope [www.pkal.org]). With the advent of genome sequencing and bioinformatics, many scientists now formulate biological questions and interpret research results in the context of genomic information. Just as the use of bioinformatic tools and databases changed the way scientists investigate problems, it must change how scientists teach to create new opportunities for students to gain experiences reflecting the influence of genomics, proteomics, and bioinformatics on modern life sciences research. Educators have responded by incorporating bioinformatics into diverse life science curricula. While these published exercises in, and guidelines for, bioinformatics curricula are helpful and inspirational, faculty new to the area of bioinformatics inevitably need training in the theoretical underpinnings of the algorithms. Moreover, effectively integrating bioinformatics into courses or independent research projects requires infrastructure for organizing and assessing student work. Here, we present a new platform for faculty to keep current with the rapidly changing field of bioinformatics, the Integrated Microbial Genomes Annotation Collaboration Toolkit (IMG-ACT). It was developed by instructors from both research-intensive and predominately undergraduate institutions in collaboration with the Department of Energy-Joint Genome Institute (DOE-JGI) as a means to innovate and update undergraduate education and faculty development. The IMG-ACT program provides a cadre of tools, including access to a clearinghouse of genome sequences, bioinformatics databases, data storage, instructor course management, and student notebooks for organizing the results of their bioinformatic investigations. In the process, IMG-ACT makes it feasible to provide undergraduate research opportunities to a greater number and diversity of students, in contrast to the traditional mentor-to-student apprenticeship model for undergraduate research, which can be too expensive and time-consuming to provide for every undergraduate. The IMG-ACT serves as the hub for the network of faculty and students that use the system for microbial genome analysis. Open access of the IMG-ACT infrastructure to participating schools ensures that all types of higher education institutions can utilize it. With the infrastructure in place, faculty can focus their efforts on the pedagogy of bioinformatics, involvement of students in research, and use of this tool for their own research agenda. What the original faculty members of the IMG-ACT development team present here is an overview of how the IMG-ACT program has affected our development in terms of teaching and research with the hopes that it will inspire more faculty to get involved.

Ditty, Jayna L.; Kvaal, Christopher A.; Goodner, Brad; Freyermuth, Sharyn K.; Bailey, Cheryl; Britton, Robert A.; Gordon, Stuart G.; Heinhorst, Sabine; Reed, Kelynne; Xu, Zhaohui; Sanders-Lorenz, Erin R.; Axen, Seth; Kim, Edwin; Johns, Mitrick; Scott, Kathleen; Kerfeld, Cheryl A.

2011-08-01T23:59:59.000Z

214

These slides are updated on a monthly basis as soon as data are reasonably final for the preceding month. Hours worked are  

E-Print Network (OSTI)

Facilities are Offsite Joint Genome Institute Biofuels Life Sciences NERSC Operations Offices 0 5 SCALE

Eisen, Michael

215

JOINT ELECTRICAL & COMPUTER ENGINEERING AND  

E-Print Network (OSTI)

JOINT ELECTRICAL & COMPUTER ENGINEERING AND PHYSICS COLLOQUIUM "Speckle Statistics, Coherence confirmation of the increase in the well- defined polarization state of the output radiation. In the joint

216

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)  

SciTech Connect

Starkeya novella (Starkey 1934) Kelly et al. 2000 is a member of the family Xanthobacteraceae in the order Rhizobiales , which is thus far poorly characterized at the genome level. Cultures from this spe- cies are most interesting due to their facultatively chemolithoautotrophic lifestyle, which allows them to both consume carbon dioxide and to produce it. This feature makes S. novella an interesting model or- ganism for studying the genomic basis of regulatory networks required for the switch between con- sumption and production of carbon dioxide, a key component of the global carbon cycle. In addition, S. novella is of interest for its ability to grow on various inorganic sulfur compounds and several C1- compounds such as methanol. Besides Azorhizobium caulinodans, S. novella is only the second spe- cies in the family Xanthobacteraceae with a completely sequenced genome of a type strain. The cur- rent taxonomic classification of this group is in significant conflict with the 16S rRNA data. The ge- nomic data indicate that the physiological capabilities of the organism might have been underestimat- ed. The 4,765,023 bp long chromosome with its 4,511 protein-coding and 52 RNA genes was se- quenced as part of the DOE Joint Genome Institute Community Sequencing Program (CSP) 2008.

Kappler, Ulrike [University of Queensland, The, Brisbane, Queensland, Australia; Davenport, Karen W. [Los Alamos National Laboratory (LANL); Beatson, Scott [University of Queensland, The, Brisbane, Queensland, Australia; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Berry, Kerrie W. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Chang, Yun-Juan [ORNL; Jeffries, Cynthia [Oak Ridge National Laboratory (ORNL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

217

Fungal glycoside hydrolases for saccharification of lignocellulose: outlook for new discoveries fueled by genomics and functional studies  

DOE Green Energy (OSTI)

Genome sequencing of a variety of fungi is a major initiative currently supported by the Department of Energy’s Joint Genome Institute. Encoded within the genomes of many fungi are upwards of 200+ enzymes called glycoside hydrolases (GHs). GHs are known for their ability to hydrolyze the polysaccharide components of lignocellulosic biomass. Production of ethanol and “next generation” biofuels from lignocellulosic biomass represents a sustainable route to biofuels production. However this process has to become more economical before large scale operations are put into place. Identifying and characterizing GHs with improved properties for biomass degradation is a key factor for the development of cost effective processes to convert biomass to fuels and chemicals. With the recent explosion in the number of GH encoding genes discovered by fungal genome sequencing projects, it has become apparent that improvements in GH gene annotation processes have to be developed. This will enable more informed and efficient decision making with regard to selection and utilization of these important enzymes in bioprocess that produce fuels and chemicals from lignocellulosic feedstocks.

Jovanovic, Iva; Magnuson, Jon K.; Collart, Frank R.; Robbertse, Barbara; Adney, William S.; Himmel, Michael E.; Baker, Scott E.

2009-08-01T23:59:59.000Z

218

Using Partial Genomic Fosmid Libraries for Sequencing Complete Organellar Genomes  

E-Print Network (OSTI)

than total nuclear genome sequencing, making broaderavailable organellar genome sequencing methods, especiallyenables plastid genome sequencing from both parasitic and

McNeal, Joel R.; Leebens-Mack, James H.; Arumuganathan, K.; Kuehl, Jennifer V.; Boore, Jeffrey L.; dePamphilis, Claude W.

2005-01-01T23:59:59.000Z

219

Development of Genomic and Genetic Tools for Foxtail Millet, and Use of These Tools in the Improvement of Biomass Production for Bioenergy Crops  

DOE Green Energy (OSTI)

The overall aim of this research was to develop genomic and genetic tools in foxtail millet that will be useful in improving biomass production in bioenergy crops such as switchgrass, napier grass, and pearl millet. A variety of approaches have been implemented, and our lab has been primarily involved in genome analysis and quantitative genetic analysis. Our progress in these activities has been substantially helped by the genomic sequence of foxtail millet produced by the Joint Genome Institute (Bennetzen et al., in prep). In particular, the annotation and analysis of candidate genes for architecture, biomass production and flowering has led to new insights into the control of branching and flowering time, and has shown how closely related flowering time is to vegetative architectural development and biomass accumulation. The differences in genetic control identified at high and low density plantings have direct relevance to the breeding of bioenergy grasses that are tolerant of high planting densities. The developmental analyses have shown how plant architecture changes over time and may indicate which genes may best be manipulated at various times during development to obtain required biomass characteristics. This data contributes to the overall aim of significantly improving genetic and genomic tools in foxtail millet that can be directed to improvement of bioenergy grasses such as switchgrass, where it is important to maximize vegetative growth for greatest biomass production.

Doust, Andrew, N.

2011-11-11T23:59:59.000Z

220

Quantum Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Quantum Institute Quantum Institute Quantum Institute A new research frontier awaits! Our door is open and we thrive on mutually beneficial partnerships, collaborations that drive innovations and new technologies. Contact Leader Malcolm Boshier (505) 665-8892 Email Two of LANL's most successful quantum technology initiatives: quantum cryptography and the race for quantum computer The area of quantum information, science, and technology is rapidly evolving, with important applications in the areas of quantum cryptography, quantum computing, quantum metrology, and advanced quantum-based sensors, some of which are directly relevant to the Laboratory's national security mission. Mission Foster a vigorous intellectual environment at LANL Define and develop strategic thrusts Target and pursue funding opportunities

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221

High pressure ceramic joint  

DOE Patents (OSTI)

Many recuperators have components which react to corrosive gases and are used in applications where the donor fluid includes highly corrosive gases. These recuperators have suffered reduced life, increased service or maintenance, and resulted in increased cost. The present joint when used with recuperators increases the use of ceramic components which do not react to highly corrosive gases. Thus, the present joint used with the present recuperator increases the life, reduces the service and maintenance, and reduces the increased cost associated with corrosive action of components used to manufacture recuperators. The present joint is comprised of a first ceramic member, a second ceramic member, a mechanical locking device having a groove defined in one of the first ceramic member and the second ceramic member. The joint and the mechanical locking device is further comprised of a refractory material disposed in the groove and contacting the first ceramic member and the second ceramic member. The present joint mechanically provides a high strength load bearing joint having good thermal cycling characteristics, good resistance to a corrosive environment and good steady state strength at elevated temperatures. 4 figures.

Ward, M.E.; Harkins, B.D.

1993-11-30T23:59:59.000Z

222

High pressure ceramic joint  

DOE Patents (OSTI)

Many recuperators have components which react to corrosive gases and are used in applications where the donor fluid includes highly corrosive gases. These recuperators have suffered reduced life, increased service or maintenance, and resulted in increased cost. The present joint when used with recuperators increases the use of ceramic components which do not react to highly corrosive gases. Thus, the present joint used with the present recuperator increases the life, reduces the service and maintenance, and reduces the increased cost associated with corrosive action of components used to manufacture recuperators. The present joint is comprised of a first ceramic member, a second ceramic member, a mechanical locking device having a groove defined in one of the first ceramic member and the second ceramic member. The joint and the mechanical locking device is further comprised of a refractory material disposed in the groove and contacting the first ceramic member and the second ceramic member. The present joint mechanically provides a high strength load bearing joint having good thermal cycling characteristics, good resistance to a corrosive environment and good steady state strength at elevated temperatures.

Ward, Michael E. (Poway, CA); Harkins, Bruce D. (San Diego, CA)

1993-01-01T23:59:59.000Z

223

Operations capability improvement of a molecular biology laboratory in a high throughput genome sequencing center  

E-Print Network (OSTI)

The Broad Institute is a research collaboration of MIT, Harvard University and affiliated hospitals, and the Whitehead Institute for Biomedical Research. Its scientific mission is to "(1) create tools for genomic medicine ...

Vokoun, Matthew R. (Matthew Richard)

2005-01-01T23:59:59.000Z

224

Operational streamlining in a high-throughput genome sequencing center  

E-Print Network (OSTI)

Advances in medicine rely on accurate data that is rapidly provided. It is therefore critical for the Genome Sequencing platform of the Broad Institute of MIT and Harvard to continually strive to reduce cost, improve ...

Person, Kerry P. (Kerry Patrick)

2006-01-01T23:59:59.000Z

225

Genomics and Systems Biology  

NLE Websites -- All DOE Office Websites (Extended Search)

Genomics and Systems Biology LANL leads the world in computational finishing of microbial genomes Read caption + In 2013, Los Alamos scientist Richard Sayre and his team...

226

Bogoliubov Laboratory of Theoretical Physics JOINT INSTITUTE FOR NUCLEAR RESEARCH  

E-Print Network (OSTI)

role increasing the ``cold fusion'' probability in electronic molecules whose nuclear constituents have. Therefore, widths of such resonances giving a probability of a fusion of the nu­ clear constituents for the molecules LiD and H 2 O. There exists also a well­known exam­ ple [?] of muon catalyzed fusion of deuteron

227

Climate Models from the Joint Global Change Research Institute  

DOE Data Explorer (OSTI)

•\tEPIC - (aka WinEPIC) The Environmental Policy Integrated Climate (EPIC) Model is a process-based agricultural systems model composed of simulation components for weather, hydrology, nutrient cycling, pesticide fate, tillage, crop growth, soil erosion, crop and soil management and economics. Staff at PNNL have been involved in the development of this model by integrating new sub-models for soil carbon dynamics and nitrogen cycling.

228

Weather and Joints  

NLE Websites -- All DOE Office Websites (Extended Search)

Weather and Joints Weather and Joints Name: Brittany Location: N/A Country: N/A Date: N/A Question: Why do people feel the weather changin in their joints? Is it just a superstition? Replies: People feel weather changes in their bodies because storm systems are accompanied by lower air pressure. When a storm system is approaching the barometric pressure or air pressure will drop. Inside the body is air pressure also. The pressure inside the body is approximately 15 lbs per square inch. Normal air pressure on the outside is approximately the same. When both numbers are equal most people don't feel anything. However, when the low pressure system approaches or the air pressure drops, the pressure on the inside of the body is greater than outside and that air on the inside tries to get out because air flows from high pressure to low pressure. This causes swelling and discomfort in some people's joints, especially in the elderly or people who have suffered injuries to those areas (those areas are weakened somewhat due to the injury and less resistant to the changes in pressure).

229

INTEGRATED GENOME-BASED STUDIES OF SHEWANELLA ECOPHYSIOLOGY  

SciTech Connect

This project had as its goals the understanding of the ecophysiology of the genus Shewanella using various genomics approaches. As opposed to other programs involving Shewanella, this one branched out into the various areas in which Shewanella cells are active, and included both basic and applied studies. All of the work was, to some extent, related to the ability of the bacteria to accomplish electron exchange between the cell and solid state electron acceptors and/or electron donors, a process we call Extracellular Electron Transport, or EET. The major accomplishments related to several different areas: Basic Science Studies: 1. Genetics and genomics of nitrate reduction, resulting in elucidation of atypical nitrate reduction systems in Shewanella oneidensis (MR-1)[2]. 2. Influence of bacterial strain and growth conditions on iron reduction, showing that rates of reduction, extents of reduction, and the formation of secondary minerals were different for different strains of Shewanella [3,4,9]. 3. Comparative genomics as a tool for comparing metabolic capacities of different Shewanella strains, and for predicting growth and metabolism [6,10,15]. In these studies, collaboration with ORNL, PNNL, and 4. Basic studies of electron transport in strain MR-1, both to poised electrodes, and via conductive nanowires [12,13]. This included the first accurate measurements of electrical energy generation by a single cell during electrode growth [12], and the demonstration of electrical conductivity along the length of bacterial nanowires [13]. 5. Impact of surface charge and electron flow on cell movement, cell attachment, cell growth, and biofilm formation [7.18]. The demonstration that interaction with solid state electron acceptors resulted in increased motility [7] led to the description of a phenomenon called electrokinesis. The importance of this for biofilm formation and for electron flow was hypothesized by Nealson & Finkel [18], and is now under study in several laboratories. Applications: 1. Corrosion: Electron flow is often part of the corrosive process, and several studies were done in concert with this proposal with regard to the ability of EET-capable bacteria to enhance, inhibit, or detect corrosion. These included using EET-capable bacteria to detect corrosion in its earliest stages [5], to use corrosion-causing bacteria for the study of the microbe/mineral interface during corrosion [1], and to study the groups of microbes involved with corrosion of natural systems [19]. 2. Bioenergy and microbial fuel cells: The production of electricity by Shewanella was shown early in this program (several years ago) to be dependent on the genes for extracellular electron transport (EET), and applied work involved the testing of various strains and conditions for the optimization of current production by the shewanellae [11,14,16]. 3. Identification of shewanellae strains: Based on similarities seen in genomic comparisons, a rapid method was employed for distinguishing between shewanellae strains [17]. Interactions with other laboratories: This grant was an extension of a grant involving the so-called ?Shewanella Federation?, and as such, a number of our publications were joint with other members of this group. The groups included: 1. Pacific Northwest Laboratories ? 2. Oak Ridge National Labs 3. Michigan State University 4. University of Oklahoma 5. Naval Research Laboratory, Washington DC 6. Burnham Medical Research Institute, San Diego 7. J. Craig Venter Institute, San Diego Education: Graduate Students: Michael Waters, Ph.D. ? at NIST, Washington D.C. Lewis Hsu, Ph.D. ? at NRL, San Diego Howard Harris, Ph.D. ? Postdoc at University, France Everett Salas, Ph.D. ? Scientist at Chevron McLean, Jeffrey, Ph.D. ? Scientist at J. Craig Venter Institute McCrow, John, Ph.D. ? Scientist at J. Craig Venter Institute Postdocs: Mohamed El-Naggar ? Professor of Physics, USC Jinjun Kan ? Senior Researcher at Undergraduatges: During this year, we had three undergraduate researchers in the lab, each working on an aspect of this work, and each

NEALSON, KENNETH H.

2013-10-15T23:59:59.000Z

230

Rolling contact orthopaedic joint design  

E-Print Network (OSTI)

Arthroplasty, the practice of rebuilding diseased biological joints using engineering materials, is often used to treat severe arthritis of the knee and hip. Prosthetic joints have been created in a "biomimetic" manner to ...

Slocum, Alexander Henry, Jr

2013-01-01T23:59:59.000Z

231

JGI Partners  

NLE Websites -- All DOE Office Websites (Extended Search)

Partners The DOE Joint Genome Institute (DOE JGI) integrates the genomic capabilities of six partner institutions: Lawrence Berkeley National Laboratory, Lawrence Livermore...

232

Joint Outreach Task Group Former Workers Screening Program | Department of  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Joint Outreach Task Group Former Workers Screening Program Joint Outreach Task Group Former Workers Screening Program The Joint Outreach Task Group (JOTG) includes representatives from HSS, Department of Labor (DOL), the National Institute for Occupational Safety and Health (NIOSH), the Offices of the Ombudsman for DOL and NIOSH, and the DOE-funded FWP projects. The JOTG was established in 2009 under the premise that agencies/programs with common goals can work together by combining resources and coordinating outreach efforts. Each involved agency has a different mission, but the missions are complementary. By working together, the agencies are better able to serve the DOE workforce. The JOTG focuses on educating the former workers on the programs and resources available to them.

233

Double slotted socket spherical joint  

DOE Patents (OSTI)

A new class of spherical joints is disclosed. These spherical joints are capable of extremely large angular displacements (full cone angles in excess of 270.degree.), while exhibiting no singularities or dead spots in their range of motion. These joints can improve or simplify a wide range of mechanical devices.

Bieg, Lothar F. (Albuquerque, NM); Benavides, Gilbert L. (Albuquerque, NM)

2001-05-22T23:59:59.000Z

234

Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1T)  

Science Conference Proceedings (OSTI)

Polynucleobacter necessarius subsp. asymbioticus Hahn et al. 2009 is one of currently two subspecies of P. necessarius. While P. necessarius subsp. asymbioticus is a free-living bacterium, the closely related second subspecies, P. necessarius subsp. necessarius is an obligate endosymbiont living in the cytoplasm of freshwater ciliates of the genus Euplotes aediculatus. The two P. necessarius subspecies were the closest thus far reported phylogenetic neighbors that differ in their lifestyle as obligately free-living vs. obligate endosymbiontic, and they are the only members of the genus Polynucleobacter with completely sequenced genomes. The genome-sequenced strain represents a group of closely related strains not distinguishable by 16S rRNA, 16S-23S ITS or glnA sequences, which is persistent in the home habitat of the strain and frequently contributes > 10% of total bacterial numbers in water samples of the habitat. The 2,159,490 bp long chromosome with a total of 2,088 protein-coding and 48 RNA genes was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program 2006.

Meincke, Linda [Los Alamos National Laboratory (LANL); Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Berry, Kerrie W. [United States Department of Energy Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Wu, Qinglong L. [Austrian Academy of Sciences, Institute for Limnology, Mondsee, Austria; Pockl, Matthias [Austrian Academy of Sciences, Institute for Limnology, Mondsee, Austria; Hahn, Martin W. [Austrian Academy of Sciences, Institute for Limnology, Mondsee, Austria; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

2012-01-01T23:59:59.000Z

235

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)  

Science Conference Proceedings (OSTI)

Herpetosiphon aurantiacus Holt and Lewin 1968 is the type species of the genus Herpetosiphon, which in turn is the type genus of the family Herpetosiphonaceae, type family of the order Herpe- tosiphonales in the phylum Chloroflexi. H. aurantiacus cells are organized in filaments which can rapidly glide. The species is of interest not only because of its rather isolated position in the tree of life, but also because Herpetosiphon ssp. were identified as predators capable of facultative pre- dation by a wolf pack strategy and of degrading the prey organisms by excreted hydrolytic en- zymes. The genome of H. aurantiacus strain 114-95T is the first completely sequenced genome of a member of the family Herpetosiphonaceae. The 6,346,587 bp long chromosome and the two 339,639 bp and 99,204 bp long plasmids with a total of 5,577 protein-coding and 77 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2005.

Kiss, Hajnalka [Los Alamos National Laboratory (LANL); Nett, Markus [Hans Knöll Institute, Jena, Germany; Domin, Nicole [Hans Knöll Institute, Jena, Germany; Martin, Karin [Hans Knöll Institute, Jena, Germany; Maresca, Julia A. [Pennsylvania State University, University Park, PA; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Berry, Kerrie W. [United States Department of Energy Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Bryant, Donald A. [Pennsylvania State University, University Park, PA

2011-01-01T23:59:59.000Z

236

CGAL: computing genome assembly likelihoods  

E-Print Network (OSTI)

SM, Lei M, Li J, et al: Genome sequencing in microfabricatedDe novo bacterial genome sequencing: millions of very shortGenome assembly, evaluation, likelihood, sequencing.

Rahman, Atif; Pachter, Lior

2013-01-01T23:59:59.000Z

237

Genomics and the human genome project: implications for psychiatry  

E-Print Network (OSTI)

and psychosis: a convergent functional genomics approach.Physiology & Genomics, 4, 83–91. O LIPHANT , A. , B ARKER ,2004), 16(4), 294–300 Genomics and the Human Genome Project:

Kelsoe, J R

2004-01-01T23:59:59.000Z

238

Jet Joint Undertaking  

E-Print Network (OSTI)

Recent experience with the use of tritium fuel in the Tokamak Fusion Test Reactor and the Joint European Torus, together with progress in developing the technical design of the International Thermonuclear Experimental Reactor has expanded the technical knowledge base for tritium issues in fusion. This paper reports on an IEA workshop that brought together scientists and engineers to share experience and expertise on all fusion related tritium issues. Extensive discussion periods were devoted to exploring outstanding issues and identifying potential R&D avenues to address them. This paper summarizes the presentations, discussions and recommendations.

C H Skinner; C Gentile; J Hosea; D Mueller; P Coad; Abingdon Ox Ea; G Federici; Garching Germany; R Haange

1998-01-01T23:59:59.000Z

239

Comparative genomic workflow  

E-Print Network (OSTI)

his article describes a workflow for identifying conserved patterns in noncoding regions of vertebrate genomes, with an intention of investigating possible functions of the conserved regions. The annotations of genomes are ...

Rajapakse, Jagath

240

Jointly Sponsored Research Program  

DOE Green Energy (OSTI)

U.S. Department of Energy (DOE) Cooperative Agreement DE-FC26-98FT40321 funded through the Office of Fossil Energy and administered at the National Energy Technology Laboratory (NETL) supported the performance of a Jointly Sponsored Research Program (JSRP) at the Energy & Environmental Research Center (EERC) with a minimum 50% nonfederal cost share to assist industry in commercializing and effectively applying highly efficient, nonpolluting energy systems that meet the nation's requirements for clean fuels, chemicals, and electricity in the 21st century. The EERC in partnership with its nonfederal partners jointly performed 131 JSRP projects for which the total DOE cost share was $22,716,634 (38%) and the nonfederal share was $36,776,573 (62%). Summaries of these projects are presented in this report for six program areas: (1) resource characterization and waste management, (2) air quality assessment and control, (3) advanced power systems, (4) advanced fuel forms, (5) value-added coproducts, and (6) advanced materials. The work performed under this agreement addressed DOE goals for reductions in CO{sub 2} emissions through efficiency, capture, and sequestration; near-zero emissions from highly efficient coal-fired power plants; environmental control capabilities for SO{sub 2}, NO{sub x}, fine respirable particulate (PM{sub 2.5}), and mercury; alternative transportation fuels including liquid synfuels and hydrogen; and synergistic integration of fossil and renewable resources.

Everett A. Sondreal; John G. Hendrikson; Thomas A. Erickson

2009-03-31T23:59:59.000Z

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241

Metal to ceramic sealed joint  

DOE Patents (OSTI)

A metal to ceramic sealed joint which can withstand wide variations in temperature and maintain a good seal is provided for use in a device adapted to withstand thermal cycling from about 20 to about 1000 degrees C. The sealed joint includes a metal member, a ceramic member having an end portion, and an active metal braze forming a joint to seal the metal member to the ceramic member. The joint is positioned remote from the end portion of the ceramic member to avoid stresses at the ends or edges of the ceramic member. The sealed joint is particularly suited for use to form sealed metal to ceramic joints in a thermoelectric generator such as a sodium heat engine where a solid ceramic electrolyte is joined to metal parts in the system.

Lasecki, John V. (Livonia, MI); Novak, Robert F. (Farmington Hills, MI); McBride, James R. (Ypsilanti, MI)

1991-01-01T23:59:59.000Z

242

Metal to ceramic sealed joint  

DOE Patents (OSTI)

A metal to ceramic sealed joint which can withstand wide variations in temperature and maintain a good seal is provided for use in a device adapted to withstand thermal cycling from about 20 to about 1000 degrees C. The sealed joint includes a metal member, a ceramic member having an end portion, and an active metal braze forming a joint to seal the metal member to the ceramic member. The joint is positioned remote from the end portion of the ceramic member to avoid stresses at the ends or edges of the ceramic member. The sealed joint is particularly suited for use to form sealed metal to ceramic joints in a thermoelectric generator such as a sodium heat engine where a solid ceramic electrolyte is joined to metal parts in the system. 11 figures.

Lasecki, J.V.; Novak, R.F.; McBride, J.R.

1991-08-27T23:59:59.000Z

243

Genome in a Bottle Consortium  

Science Conference Proceedings (OSTI)

Genome in a Bottle Consortium. Summary: NIST has organized the "Genome in a Bottle Consortium" to develop the reference ...

2013-03-15T23:59:59.000Z

244

JOINT OFFICER MANAGEMENT PROGRAM PROCEDURES  

E-Print Network (OSTI)

implementation of the DOD Joint Officer Management (JOM) and Joint Qualification System (JQS) per references a through c. Reference a delegates the authority to the Chairman of the Joint Chiefs of Staff to establish and publish regulations and procedures to ensure compliance with the statutory and Department policy standards for DOD’s JOM program. 2. Cancellation. CJCSI 1330.02C, 24 February 2006, is cancelled. Required review of promotion selection board results policy guidance has been incorporated in this instruction.

References See Enclosure N; Responsibilities For

2008-01-01T23:59:59.000Z

245

Institutional 2-cells and Grothendieck institutions  

E-Print Network (OSTI)

. of Computer Science, University of Bremen, Germany Abstract. We propose to use Grothendieck institutions based specification, you want to prove a theorem, and hence want to see a list of its possible translations (along (co)comorphisms) into tool-supported institutions. Now even with a small diagram of institutions, the list can become quite

Mossakowski, Till - Deutschen Forschungszentrum für Künstliche Intelligenz & Fachbereich 3

246

CRUCIFORM CONTROL ROD JOINT  

DOE Patents (OSTI)

An invention is described which relates to nuclear reactor control rod components and more particularly to a joint between cruciform control rod members and cruciform control rod follower members. In one embodiment this invention provides interfitting crossed arms at adjacent ends of a control rod and its follower in abutting relation. This holds the members against relative opposite longitudinal movement while a compression member keys the arms against relative opposite rotation around a common axis. Means are also provided for centering the control rod and its follower on a common axis and for selectively releasing the control rod from its follower for the insertion of a replacement of the control rod and reuse of the follower. (AEC)

Thorp, A.G. II

1962-08-01T23:59:59.000Z

247

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Argonne Accelerator Institute: Mission The mission of the Argonne Accelerator Institute is centered upon the following related goals: Locate next generation accelerator facilities...

248

USDA and DOE Fund Genomics Projects For Bioenergy Fuels Research |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Fund Genomics Projects For Bioenergy Fuels Research Fund Genomics Projects For Bioenergy Fuels Research USDA and DOE Fund Genomics Projects For Bioenergy Fuels Research August 9, 2006 - 8:43am Addthis WASHINGTON, DC - Aug. 9, 2006 - Energy Secretary Samuel Bodman and Agriculture Secretary Mike Johanns today announced that the Department of Agriculture and the Department of Energy (DOE) have jointly awarded nine grants totaling $5.7 million for biobased fuels research that will accelerate the development of alternative fuel resources. Bodman commented, "These research projects build upon DOE's strategic investments in genomics, to accelerate scientific discovery and promote the development of alternative energy sources vital to America's energy and economic security." "To be a reliable renewable energy source, farmers and ranchers will need

249

Solar Energy Research Institute of Singapore | Open Energy Information  

Open Energy Info (EERE)

Institute of Singapore Institute of Singapore Jump to: navigation, search Name Solar Energy Research Institute of Singapore Place Singapore, Singapore Zip 117574 Sector Solar Product The research institute focuses on advanced technologies that specifically address the needs of the solar industry. It is run jointly by the National University of Singapore in partnership with the multi-agency Clean Energy Programme Office. References Solar Energy Research Institute of Singapore[1] LinkedIn Connections CrunchBase Profile No CrunchBase profile. Create one now! This article is a stub. You can help OpenEI by expanding it. Solar Energy Research Institute of Singapore is a company located in Singapore, Singapore . References ↑ "Solar Energy Research Institute of Singapore"

250

An integrative approach for genomic island prediction in Prokaryotic genomes  

Science Conference Proceedings (OSTI)

A genomic island (GI) is a segment of genomic sequence that is horizontally transferred from other genomes. The detection of genomic islands is extremely important to the medical research. Most of current computational approaches that use sequence composition ... Keywords: gene information, genomic islands, intergenic distance, sequence composition

Han Wang; John Fazekas; Matthew Booth; Qi Liu; Dongsheng Che

2011-05-01T23:59:59.000Z

251

2014 Joint Action Workshop | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

2014 Joint Action Workshop 2014 Joint Action Workshop January 12, 2014 8:00AM EST to January 14, 2014 5:00PM EST Palm Desert, California The Joint Action Workshop is an annual...

252

BMC Genomics BioMed Central  

E-Print Network (OSTI)

Software Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome

Vasily Tcherepanov; Angelika Ehlers; Chris Upton

2006-01-01T23:59:59.000Z

253

Genomics and Systems Biology  

NLE Websites -- All DOE Office Websites (Extended Search)

Genomics and Systems Biology Genomics and Systems Biology Genomics and Systems Biology Los Alamos scientists perform research in functional genomics and structural genomics, and applications for such work cover diverse fields such as energy, agriculture, and environmental cleanup. Get Expertise Babetta Marrone Biofuels Program Manager Email Cheryl Kuske DOE BER Biological System Science Division Program Manager Email Chris Detter Emerging Threats Program Manager: Email Rebecca McDonald Bioscience Communications Email "We were asked to build a rocket ship," said developer Joel Berendzen, "but instead we built a 10,000 mph motorcycle." - Sequedex team LANL leads the world in computational finishing of microbial genomes Protein research Read caption + In 2013, Los Alamos scientist Richard Sayre and his team genetically

254

Former Worker Program - Joint Outreach Task Group  

NLE Websites -- All DOE Office Websites (Extended Search)

Group Group Former Worker Medical Screening Program (FWP) The Joint Outreach Task Group (JOTG) includes representatives from HSS, Department of Labor (DOL), the National Institute for Occupational Safety and Health (NIOSH), the Offices of the Ombudsman for DOL and NIOSH, and the DOE-funded FWP projects. The JOTG was established in 2009 under the premise that agencies/programs with common goals can work together by combining resources and coordinating outreach efforts. Each involved agency has a different mission, but the missions are complementary. By working together, the agencies are better able to serve the DOE workforce. The JOTG focuses on educating the former workers on the programs and resources available to them. The JOTG has created a monthly calendar of community events to facilitate interagency and community involvement in these events.

255

Genome Sequence Databases (Overview): Sequencing and Assembly  

E-Print Network (OSTI)

complete microbial genome sequencing (you get what you payet al. (2005). Genome sequencing in open microfabricatedof problem solving in genome sequencing. Genome Research 8,

Lapidus, Alla L.

2009-01-01T23:59:59.000Z

256

Genome Analysis and Systems Modeling Group  

NLE Websites -- All DOE Office Websites (Extended Search)

(Microbial Genomes) Pipeline, Comprehensive Genome Analysis Pipeline Genome Channel, Java applet for the comprehensive sequence-based view of genomes. Grail, a tool for the...

257

JGI - Undergraduate Research in Functional Genomics  

NLE Websites -- All DOE Office Websites (Extended Search)

Education Microbial Genome Analysis Microbial Functional Genomics Undergraduate Research in Microbial Functional Genomics Genomics not only can answer questions about known genes,...

258

Genome Science/Technologies  

NLE Websites -- All DOE Office Websites (Extended Search)

Science & Innovation » Science & Innovation » Science & Engineering Capabilities » Bioscience: Bioenergy, Biosecurity, and Health » Environmental Microbiology » Genome Genome Science/Technologies Los Alamos using cutting-edge sequencing, finishing, and analysis, impact valuable genomic data. Get Expertise Cheryl Kuske DOE BER Biological System Science Division Program Manager Email Srinivas Iyer Bioscience Group Leader Email Momchilo Vuyisich Bioenergy and Biomedical Sciences Email Rebecca McDonald Bioscience Communications Email State-of-the art technology and extensive genomics expertise Protein research Read caption + Los Alamos National Laboratory graduate student, Patricia Langan, changes the properties of a green fluorescent protein in order to create new fluorescent protein variants.

259

Genome Science/Technologies  

NLE Websites -- All DOE Office Websites (Extended Search)

Momchilo Vuyisich Bioenergy and Biomedical Sciences Email Rebecca McDonald Bioscience Communications Email State-of-the art technology and extensive genomics expertise Protein...

260

JGI - Genomic Technologies  

NLE Websites -- All DOE Office Websites (Extended Search)

opportunities for technological access to our user services (including single cell genomics and DNA synthesis). Our Department serves at the interface between the Project...

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
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261

Petroleum Institute Scholarly Publications  

E-Print Network (OSTI)

Abu Dhabi The Petroleum Institute Scholarly Publications January 1st ­ December 31st 2007 #12;The Petroleum Institute Scholarly Publications January 1st ­ December 31st 2007 v #12;- 2 - Scholarly Publications 2007 | The Petroleum Institute #12;- 3 - Scholarly Publications 2007 | The Petroleum Institute

262

Washington Joint Aquatic Resources Permit Application (JARPA...  

Open Energy Info (EERE)

Washington Joint Aquatic Resources Permit Application (JARPA) Jump to: navigation, search OpenEI Reference LibraryAdd to library Legal Document- OtherOther: Washington Joint...

263

Joint SSRTNet/ALS-MES Workshop report  

E-Print Network (OSTI)

conclusion of his SRRTNet/ALS-MES Workshop presentation inJoint SSRTNet/ALS-MES Workshop This joint workshop broughtthe Advanced Light Source (ALS) Users’ Association Annual

Shuh, David; Van Hove, Michel

2001-01-01T23:59:59.000Z

264

JGI - The Facility  

NLE Websites -- All DOE Office Websites (Extended Search)

The Facility aerial photo of JGI The Joint Genome Institute (foreground) The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is located in the former Dow Chemical...

265

Joint probabilities and quantum cognition  

E-Print Network (OSTI)

In this paper we discuss the existence of joint probability distributions for quantum-like response computations in the brain. We do so by focusing on a contextual neural-oscillator model shown to reproduce the main features of behavioral stimulus-response theory. We then exhibit a simple example of contextual random variables not having a joint probability distribution, and describe how such variables can be obtained from neural oscillators, but not from a quantum observable algebra.

J. Acacio de Barros

2012-06-26T23:59:59.000Z

266

Joint probabilities and quantum cognition  

SciTech Connect

In this paper we discuss the existence of joint probability distributions for quantumlike response computations in the brain. We do so by focusing on a contextual neural-oscillator model shown to reproduce the main features of behavioral stimulus-response theory. We then exhibit a simple example of contextual random variables not having a joint probability distribution, and describe how such variables can be obtained from neural oscillators, but not from a quantum observable algebra.

Acacio de Barros, J. [Liberal Studies, 1600 Holloway Ave., San Francisco State University, San Francisco, CA 94132 (United States)

2012-12-18T23:59:59.000Z

267

Instituting an institute: go for it!  

Science Conference Proceedings (OSTI)

The University of New Hampshire set out to inaugurate a Faculty Instructional Technology Summer Institute (FITSI) addressing the pedagogical principles that support the successful integration of instructional technology into teaching and learning. After ... Keywords: design, educational technology, faculty development, institute, instructional technology, training

Michael Giordano; Laurel Warren Trufant

2002-11-01T23:59:59.000Z

268

Genomic analysis of mouse tumorigenesis  

E-Print Network (OSTI)

The availability of the human and mouse genome sequences has spurred a growing interest in analyzing mouse models of human cancer using genomic techniques. Comparative genomic studies on mouse and human tumors can be ...

Tam, Mandy Chi-Mun

2006-01-01T23:59:59.000Z

269

Enhancer Identification through Comparative Genomics  

E-Print Network (OSTI)

through Comparative Genomics Axel Visel, James Bristow andWalnut Creek, CA 94598 USA. Genomics Division, MS 84-171,Len A. Pennacchio, Genomics Division, One Cyclotron Road, MS

Visel, Axel; Bristow, James; Pennacchio, Len A.

2006-01-01T23:59:59.000Z

270

Spectrogram analysis of genomes  

Science Conference Proceedings (OSTI)

We perform frequency-domain analysis in the genomes of various organisms using tricolor spectrograms, identifying several types of distinct visual patterns characterizing specific DNA regions. We relate patterns and their frequency characteristics to ... Keywords: DNA spectrograms, frequency-domain analysis, genome analysis

David Sussillo; Anshul Kundaje; Dimitris Anastassiou

2004-01-01T23:59:59.000Z

271

Legume Crop Genomics  

Science Conference Proceedings (OSTI)

This book will present this technical theme in a manner that should help many readers answer the question, "What is genomics?" And finally, this book should help readers formulate an opinion on the question, "Why is genomic research needed?" Legume Crop Ge

272

Genome Properties Database  

DOE Data Explorer (OSTI)

The Genome Properties system consists of a suite of "Properties" which are carefully defined attributes of prokaryotic organisms whose status can be described by numerical values or controlled vocabulary terms for individual completely sequenced genomes. Evaluation of these properties may take place via manual curation or by computer algorithms (numerical calculations or rules-based assignment of controlled vocabulary terms). The Genome Properties system has been designed to capture the widest possible range of attributes and currently encompasses taxonomic terms, genometric calculations, metabolic pathways, systems of interacting macromolecular components and quantitative and descriptive experimental observations (phenotypes) from the literature. Wherever possible, Genome Properties are linked to traceable lines of evidence and links are provided to data for any genes which are part of this evidence. The primary source of evidence linking genes to properties is homology modelling using Hidden Markov Models (HMMs) from the TIGRFAMs and Pfam databases. (Taken from the Genome Properties Home Page)(Specialized Interface)

Haft, Daniel H.; Selengut, Jeremy D.; Brinkac, Lauren M.; Zafar, Nikhat; White, Owen

273

USDA and DOE to Coordinate Research of Plant and Microbial Genomics |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

to Coordinate Research of Plant and Microbial Genomics to Coordinate Research of Plant and Microbial Genomics USDA and DOE to Coordinate Research of Plant and Microbial Genomics January 17, 2006 - 10:39am Addthis -- Soybean DNA to be Decoded -- WASHINGTON - The U.S. Departments of Agriculture and Energy announced Monday they will share resources and coordinate the study of plant and microbial genomics, and the Department of Energy will tackle the sequencing of the soybean genome as the first project resulting from the agreement. "This agreement demonstrates a joint commitment to support high-quality genomics research and integrated projects to meet the nation's agriculture and energy challenges," said Dr. Colien Hefferan, administrator of USDA's Cooperative State Research, Extension and Economics Service (CSREES), who

274

Tackling the Triple-Threat Genome of Miscanthus x giganteus (2010 JGI User Meeting)  

Science Conference Proceedings (OSTI)

Steve Moose from the University of Illinois at Urbana-Champaign and the Energy Biosciences Institute on "Tackling the Triple-Threat Genome of Miscanthus x giganteus" on March 25, 2010 at the 5th Annual DOE JGI User Meeting

Moose, Steve

2010-03-25T23:59:59.000Z

275

Genome Bioinformatics Data from the University of California at Santa Cruz  

DOE Data Explorer (OSTI)

In addition to the sponsors listed in this citation, many additional institutions and individuals provided support and contributed data to this collection. A full listing is available on the website at http://genome.ucsc.edu/goldenPath/credits.html.

Consortium, ENCODE [Encyclopedia of DNA Elements

276

Why sequence cyanobacteria (Synechocystis) transcriptome?  

NLE Websites -- All DOE Office Websites (Extended Search)

Principal Investigators: Konstantinos Mavrommatis, DOE Joint Genome Institute Program: CSP 2010 Home > Sequencing > Why sequence cyanobacteria (Synechocystis) transcriptome...

277

The Neftemash closed joint-stock company  

Science Conference Proceedings (OSTI)

The Neftemash closed joint-stock company was created from the VNIIneftemash Scientific Production Association in the privatization process in the country. Members of the Neftemash Co. are listed. This group of members determined the basic activities of the Neftemash Co. as a multifunctional scientific production complex for designing and manufacturing modern equipment for oil and gas production and refining. By having highly qualified specialists, modern enterprises, test experience, and production capacity, this company is the leading organization in Russia and the Commonwealth of Independent States (CIS) for supplying oil and gas enterprises with petroleum equipment. The Neftemash Co. designs and produces drilling, geological prospecting, and petroleum production equipment and instrumentation. It designs oil and gas refining equipment and petrochemical equipment, equipment for processing coal and liquid fuels, including integrated automated production lines. It does fundamental and applied research in materials science, welding, and corrosion protection for oil and gas production and refining equipment. It designs ecologically safe equipment complexes for drilling wells and refining oil and gas. To a significant extent the petroleum industry in Russia was developed from the activity of the All-Union Scientific Research, Design, and Construction Institute for Petroleum Machinery. Equipment designed by the institute was used to explore, develop, and exploit oil and gas fields of western Siberia, the far north, and other petroleum regions of the country.

Umanchik, N.P.

1995-07-01T23:59:59.000Z

278

Analyzing genomic data: understanding the genome  

Science Conference Proceedings (OSTI)

The effort that led to the sequencing of the human genome ushered life sciences into a new era. One of the largest international scientific endeavors of the time delivered the genetic makeup of our species to the research community. Further international ... Keywords: Algorithmic Development, Biological Data Mining, Data Mining Software Tools

Xosé M. Fernández-Suárez

2012-03-01T23:59:59.000Z

279

APPOINTMENT OF A JOINT MEMBER New Appointment  

E-Print Network (OSTI)

APPOINTMENT OF A JOINT MEMBER Renewal: New Appointment: "A joint appointment reflects the active with an academic appointment in one academic unit may be given a joint appointment in another academic unit. ..." [Article 13.10.1] In the case of a new hire, where the intention is a Joint Appointment, there needs

Saskatchewan, University of

280

Towards the Perfect Genome Sequence (Opening Keynote) ( 7th Annual SFAF Meeting, 2012)  

Science Conference Proceedings (OSTI)

George Weinstock, associate director at the Genome Institute at Washington University, delivered the opening keynote "Towards the Perfect Genome Sequence" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Weinstock, George [Washington University

2012-06-01T23:59:59.000Z

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
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281

Institute /or ADVANCED STUDY  

E-Print Network (OSTI)

, and Stochasticity , David W. McLaughlin, Courant Institute; Waves in Random Media, George Papanicolaou, Stanford Their Properties from Nodes or Nodal Lines, Joyce McLaughlin, Rensselaer Polytechnic Institute; the graduate

282

JGI - Tanja Woyke  

NLE Websites -- All DOE Office Websites (Extended Search)

Tanja Woyke Igor Grigoriev Tanja Woyke, PhD Microbial Genomics Program Lead, DOE Joint Genome Institute Education Diploma in Biology, University of California,...

283

JGI's Pennacchio Wins Presidential Early Career Award  

NLE Websites -- All DOE Office Websites (Extended Search)

Department of Energy Joint Genome Institute (JGI) and senior staff scientist in the Genomics Division of Lawrence Berkeley National Laboratory, is among this year's recipients of...

284

Obama Administration Announces More Than $327 Million in Recovery...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

for DOE Joint Genome Institute, the world's largest genomic sequencing facility for non-medical, DOE mission-related research in bioenergy, climate, and environmental...

285

Structural Genomics | Biosciences Division  

NLE Websites -- All DOE Office Websites (Extended Search)

Chart Site Index Inside BIO BIO Safety About Argonne Midwest Center for Structural Genomics Andrzej Joachimiak Director Bldg: 202. Room: Q 118 E-mail: andrzejj@anl.gov Phone:...

286

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies  

E-Print Network (OSTI)

annotation and comparative genomics. Database (Oxford) 2009,et al. : Comparative genomics of the core and accessoryComparative genomics of the core and accessory genomes of 48

2013-01-01T23:59:59.000Z

287

The engineering institute of Los Alamos National Laboratory  

SciTech Connect

Los Alamos National Laboratory (LANL) and the University of California, San Diego (UCSD) have taken the unprecedented step of creating a collaborative, multi-disciplinary graduate education program and associated research agenda called the Engineering Institute. The mission of the Engineering Institute is to develop a comprehensive approach for conducting LANL mission-driven, multidisciplinary engineering research and to improve recruiting, revitalization, and retention of the current and future staff necessary to support the LANL' s national security responsibilities. The components of the Engineering Institute are (1) a joint LANL/UCSD degree program, (2) joint LANL/UCSD research projects, (3) the Los Alamos Dynamic Summer School, (4) an annual workshop, and (5) industry short courses. This program is a possible model for future industry/government interactions with university partners.

Farrar, Charles R [Los Alamos National Laboratory; Park, Gyuhae [Los Alamos National Laboratory; Cornwell, Phillip J [Los Alamos National Laboratory; Todd, Michael D [UCSD

2008-01-01T23:59:59.000Z

288

Jointly Sponsored Research Program Energy Related Research  

DOE Green Energy (OSTI)

Cooperative Agreement, DE-FC26-98FT40323, Jointly Sponsored Research (JSR) Program at Western Research Institute (WRI) began in 1998. Over the course of the Program, a total of seventy-seven tasks were proposed utilizing a total of $23,202,579 in USDOE funds. Against this funding, cosponsors committed $26,557,649 in private funds to produce a program valued at $49,760,228. The goal of the Jointly Sponsored Research Program was to develop or assist in the development of innovative technology solutions that will: (1) Increase the production of United States energy resources - coal, natural gas, oil, and renewable energy resources; (2) Enhance the competitiveness of United States energy technologies in international markets and assist in technology transfer; (3) Reduce the nation's dependence on foreign energy supplies and strengthen both the United States and regional economies; and (4) Minimize environmental impacts of energy production and utilization. Under the JSR Program, energy-related tasks emphasized enhanced oil recovery, heavy oil upgrading and characterization, coal beneficiation and upgrading, coal combustion systems development including oxy-combustion, emissions monitoring and abatement, coal gasification technologies including gas clean-up and conditioning, hydrogen and liquid fuels production, coal-bed methane recovery, and the development of technologies for the utilization of renewable energy resources. Environmental-related activities emphasized cleaning contaminated soils and waters, processing of oily wastes, mitigating acid mine drainage, and demonstrating uses for solid waste from clean coal technologies, and other advanced coal-based systems. Technology enhancement activities included resource characterization studies, development of improved methods, monitors and sensors. In general the goals of the tasks proposed were to enhance competitiveness of U.S. technology, increase production of domestic resources, and reduce environmental impacts associated with energy production and utilization. This report summarizes the accomplishments of the JSR Program.

Western Research Institute

2009-03-31T23:59:59.000Z

289

Joint Staff, and J-Directorate Directives”  

E-Print Network (OSTI)

1. Purpose a. To provide the process and procedures for handling the transition and reconciliation of USJFCOM issuances into CJCS/Joint Staff directives in accordance with (IAW) references a and b. b. For the purpose of this notice, the word “issuances ” refers to USJFCOM policy documents, and the word “directives ” refers to Joint Staff policy documents. 2. Cancellation. None. 3. Applicability. This notice applies to all Joint Staff personnel and to all U.S. Joint Forces Command (USJFCOM) directorates, organizations, or other subordinate activities transitioning to the Joint Staff. It does not apply to USJFCOM entities transitioning to organizations outside the Joint Staff.

Dom/sjs Cjcs Notice

2011-01-01T23:59:59.000Z

290

United States and France Sign Joint Statement on Civil Liability...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

United States and France Sign Joint Statement on Civil Liability for Nuclear Damage United States and France Sign Joint Statement on Civil Liability for Nuclear Damage Joint...

291

Joint Environmental Management System (EMS) | Department of Energy  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Environmental Management System (EMS) Joint Environmental Management System (EMS) Joint Environmental Management System (EMS) The environmental management system (EMS) has...

292

Scanned_Joint_Declaration_(Italian).pdf | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

JointDeclaration(Italian).pdf ScannedJointDeclaration(Italian).pdf ScannedJointDeclaration(Italian).pdf More Documents & Publications FTCP Face to Face Meeting - March 30,...

293

International Power Girasolar joint company | Open Energy Information  

Open Energy Info (EERE)

Girasolar joint company Jump to: navigation, search Name International Power Girasolar joint company Sector Solar Product Joint venture announced between US IPWG and...

294

Joint Outreach Task Group Former Workers Screening Program |...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Outreach Task Group Former Workers Screening Program Joint Outreach Task Group Former Workers Screening Program The Joint Outreach Task Group (JOTG) includes representatives...

295

2010_Nuclear_Security_Joint_Statement.pdf | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

NuclearSecurityJointStatement.pdf 2010NuclearSecurityJointStatement.pdf 2010NuclearSecurityJointStatement.pdf More Documents & Publications United States and France...

296

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

ICFA Beam Dynamics Mini-Workshop on DeflectingCrabbing Cavity Applications in Accelerators April 21-23, 2010, Cockcroft Institute, Daresbury Laboratory, Warrington, UK Sixth...

297

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Fermilab Collaboration Lee Teng Scholarship Program Useful Links Argonne Accelerator Institute: For Industrial Collaborators -- Working with Argonne This link is addressed to...

298

INSTITUTE OF COMPUTER SCIENCE  

E-Print Network (OSTI)

Institute of Computer Science, Academy of Sciences of the Czech Republic. Pod vod?renskou v 2, 182 07 Prague 8, Czech Republic. phone: (+420)266052083 ...

299

Data Management Group Joint Program in Transportation  

E-Print Network (OSTI)

Data Management Group Joint Program in Transportation University of Toronto System Access Request will the University of Toronto, the Joint Program in Transportation Data Management Group or any of its funding

Toronto, University of

300

Evolutionary Genomics of Life in (and from) the Sea  

E-Print Network (OSTI)

web Genomes Online NIH Genome Sequencing Input NIH GenomesAbstract High throughput genome sequencing centers that werefunding sources of genome sequencing in the United States,

Boore, Jeffrey L.

2009-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
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301

Essays on Institutions and Innovation  

E-Print Network (OSTI)

Organizational Structure of the National Institutes of HealthOrganizational Structure of the National Institutes of Health,

Hegde, Deepak

2010-01-01T23:59:59.000Z

302

Fueling the Future with Fungal Genomics  

E-Print Network (OSTI)

et al. 2008. Fungal genome sequencing and bioenergy. FungalCullen D, et al. 2008. Genome sequencing and analysis of theand lessons learned from genome sequencing. Methods Enzymol.

Grigoriev, Igor V.

2011-01-01T23:59:59.000Z

303

Requirements and standards for organelle genome databases  

E-Print Network (OSTI)

to the complete genome sequencing of many other organisms (guide the transition from human genome sequencing to being a04334; and Phakopsora genome sequencing direct funding).

Boore, Jeffrey L.

2006-01-01T23:59:59.000Z

304

VISTA - computational tools for comparative genomics  

E-Print Network (OSTI)

tools for comparative genomics Kelly A. Frazer 1 , LiorBerkeley, CA, 94720 Genomics Division, Lawrence Berkeleymultiple comparative genomics tools and provides users with

Frazer, Kelly A.; Pachter, Lior; Poliakov, Alexander; Rubin, Edward M.; Dubchak, Inna

2004-01-01T23:59:59.000Z

305

Fueling the Future with Fungal Genomics  

E-Print Network (OSTI)

JW. 2010. China's fungal genomics initiative: a whitepaper.and Saccharomycotina. BMC Genomics. 8, 325. Bailly J,Harnessing ectomycorrhizal genomics for ecological insights.

Grigoriev, Igor V.

2011-01-01T23:59:59.000Z

306

Classification Training Institute Catalog | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Classification Training Institute Catalog Classification Training Institute Catalog Enforcement Guidance Oversight Reporting Classification Classification Training Institute...

307

Optimization Online - Distributionally Robust Joint Chance ...  

E-Print Network (OSTI)

Aug 12, 2010 ... Abstract: We develop tractable semidefinite programming (SDP) based approximations for distributionally robust individual and joint chance ...

308

Alternative Transmission Technologies for Joint Planning Studies  

Science Conference Proceedings (OSTI)

This report describes a detailed analysis of joint transmission planning needs and capabilities, including an assessment of current research in the area. The report has value as a starting point and reference for transmission planners engaged in joint planning exercises because it focuses on technologies that could facilitate joint transmission planning of a bulk power grid. A joint planning exercise involves the collaboration of multiple transmission planning groups that may each have ...

2013-12-09T23:59:59.000Z

309

TMS/ASM Joint Distinguished Lectureship Award  

Science Conference Proceedings (OSTI)

Professional Honors and Awards Recipients of the TMS/ASM Joint Distinguished Lectureship Award. 2011, Subra Suresh. 2010, Mildred Dresselhaus.

310

JGI - Structural Genomics Program  

NLE Websites -- All DOE Office Websites (Extended Search)

Structural Genomics Program Structural Genomics Program The structural characterization of proteins of unknown function can be described as structural genomics, an approach in which structure determination by X-ray crystallography supplies key functional information. This is exemplified by studies of the carboxysome. The structures of the first carboxysome shell proteins (Kerfeld et al., Science 2005) confirmed earlier hypotheses that they are indeed the basic building blocks of the carboxysome shell; the quaternary structure and the higher order assemblies of the proteins in the crystals provided insight into how they assemble into shell facets. Likewise, our structure of the carboxysome component CsoS3 revealed that it was a member of the beta-carbonic family, despite having no detectable sequence homology at the level of primary structure

311

University of Toronto Joint Program in Transportation  

E-Print Network (OSTI)

University of Toronto Joint Program in Transportation Data Management Group GTA A.M. PEAK HOUR ­ Notation page i University of Toronto Joint Program in Transportation Data Management Group Preface the joint efforts of transportation planning staff of the Regional Municipalities of York, Peel, Durham

Toronto, University of

312

Joint News Release ELEVENTH ITER NEGOTIATIONS MEETING  

E-Print Network (OSTI)

Joint News Release ELEVENTH ITER NEGOTIATIONS MEETING CHENGDU , CHINA, 24OCTOBER 2005 Delegations of America met in CHENGDU on 24October 2005 to continue their work to reach agreement on the joint the project and its procurements, and the continuing joint drafting of the agreement on establishing

313

JOINT PROGRAM IN TRANSPORTATION UNIVERSITY OF TORONTO  

E-Print Network (OSTI)

JOINT PROGRAM IN TRANSPORTATION UNIVERSITY OF TORONTO 2001 TRANSPORTATION TOMORROW SURVEY not to participate) #12;JOINT PROGRAM IN TRANSPORTATION UNIVERSITY OF TORONTO 2001 TRANSPORTATION TOMORROW SURVEY Survey Area 2001 only 1996 only 1996 and 2001 1986, 1991, 1996 and 2001 #12;JOINT PROGRAM

Toronto, University of

314

Evaluation of Medium-Voltage Cable Joints  

Science Conference Proceedings (OSTI)

This research is a continuation of work evaluating performance of state-of-the-art joints. Three single-phase cold shrink joints and three "I"-type premolded separable connector joints were evaluated. Two of the separable connectors were rated 600 A and one was rated 900 A; both were installed on ethylene propylene rubber (EPR) 15-kV cables.

2006-09-27T23:59:59.000Z

315

Joint interaction with embedded concretions: joint loading congurations inferred from propagation paths  

E-Print Network (OSTI)

Joint interaction with embedded concretions: joint loading con®gurations inferred from propagation The interaction between propagating joints and embedded concretions in a Devonian black shale near Seneca Lake, NY, permits identi®cation of the loading con®gurations responsible for two joint sets of dierent ages striking

Engelder, Terry

316

INSTITUTES OF Registration  

E-Print Network (OSTI)

to the scheduled course. Sign up for: Date Laboratory Safety at the National Institutes of Health HIV Health and Safety Office of Research Services National Institutes of Health Tel: 301-496-3353 http of Occupational Health and Safety to provide annual refresher training for research laboratory personnel who may

Bandettini, Peter A.

317

Metal-ceramic joint assembly  

DOE Patents (OSTI)

A metal-ceramic joint assembly in which a brazing alloy is situated between metallic and ceramic members. The metallic member is either an aluminum-containing stainless steel, a high chromium-content ferritic stainless steel or an iron nickel alloy with a corrosion protection coating. The brazing alloy, in turn, is either an Au-based or Ni-based alloy with a brazing temperature in the range of 9500 to 1200.degree. C.

Li, Jian (New Milford, CT)

2002-01-01T23:59:59.000Z

318

Hydraulic fracturing of jointed formations  

DOE Green Energy (OSTI)

Measured by volume, North America's largest hydraulic fracturing operations have been conducted at Fenton Hill, New Mexico to create geothermal energy reservoirs. In the largest operation 21,000 m/sup 3/ of water were injected into jointed granitic rock at a depth of 3.5 km. Microearthquakes induced by this injection were measured with geophones placed in five wells drilled into, or very close, to the reservoir, as well as 11 surface seismometers. The large volume of rock over which the microearthquakes were distributed indicates a mechanism of hydraulic stimulation which is at odds with conventional fracturing theory, which predicts failure along a plane which is perpendicular to the least compressive earth stress. A coupled rock mechanics/fluid flow model provides much of the explanation. Shear slippage along pre-existing joints in the rock is more easily induced than conventional tensile failure, particularly when the difference between minimum and maximum earth stresses is large and the joints are oriented at angles between 30 and 60 degrees to the principal earth stresses, and a low viscosity fluid like water is injected. Shear slippage results in local redistribution of stresses, which allows a branching, or dendritic, stimulation pattern to evolve, in agreement with the patterns of microearthquake locations. These results are qualitatively similar to the controversial process known as ''Kiel'' fracturing, in which sequential injections and shut-ins are repeated to create dendritic fractures for enhanced oil and gas recovery. However, we believe that the explanation is shear slippage of pre-existing joints and stress redistribution, not proppant bridging and fluid blocking as suggested by Kiel. 15 refs., 10 figs.

Murphy, H.D.; Fehler, M.C.

1986-01-01T23:59:59.000Z

319

Mammalian comparative genomics and epigenomics  

E-Print Network (OSTI)

The human genome sequence can be thought of as an instruction manual for our species, written and rewritten over more than a billion of years of evolution. Taking a complete inventory of our genome, dissecting its genes ...

Mikkelsen, Tarjei Sigurd, 1978-

2009-01-01T23:59:59.000Z

320

Life Sciences & Genomics Division Diversity  

NLE Websites -- All DOE Office Websites (Extended Search)

Sciences & Genomics Diversity imagemap Workforce Diversity Action Plans title Diversity Committee Employment Opportunities Community Outreach Activities htmlempopps.html Read...

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


321

Malibu Joint Venture | Open Energy Information  

Open Energy Info (EERE)

Malibu Joint Venture Malibu Joint Venture Jump to: navigation, search Name Malibu Joint Venture Place Germany Sector Solar Product String representation "German utility ... e of next year." is too long. References Malibu Joint Venture[1] LinkedIn Connections CrunchBase Profile No CrunchBase profile. Create one now! This article is a stub. You can help OpenEI by expanding it. Malibu Joint Venture is a company located in Germany . References ↑ "Malibu Joint Venture" Retrieved from "http://en.openei.org/w/index.php?title=Malibu_Joint_Venture&oldid=348612" Categories: Clean Energy Organizations Companies Organizations Stubs What links here Related changes Special pages Printable version Permanent link Browse properties 429 Throttled (bot load) Error 429 Throttled (bot load)

322

Joint Environmental Management System (EMS) Declaration of Conformance...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Services Environmental Management System Joint Environmental Management System (EMS) Declaration of Conformance Joint Environmental Management System (EMS) Declaration of...

323

NATIONAL INSTITUTES OF HEALTH | National Cancer Institute LABORATORY OF PATHOLOGY  

E-Print Network (OSTI)

NATIONAL INSTITUTES OF HEALTH | National Cancer Institute LABORATORY OF PATHOLOGY National Cancer Institute (NCI) The Laboratory of Pathology, based in the NCI, provides clinical service in anatomic-scientists DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Cancer Institute, Center

324

Genome in a Bottle Consortium Workshop  

Science Conference Proceedings (OSTI)

Genome in a Bottle Consortium Workshop. Purpose: NIST ... well. Related Project(s): Genome in a Bottle Consortium. Details: ...

2013-08-13T23:59:59.000Z

325

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

AAI Home AAI Home Welcome Accelerators at Argonne Mission Organization History Document Collection Conferences & Workshops Beams and Applications Seminar Argonne-Fermilab Collaboration Lee Teng Scholarship Program Useful Links Organization The Argonne Accelerator Institute is a matrixed organization. Its members and fellows reside in programmatic Argonne divisions. The Institute reports to the Associate Laboratory Director for Photon Science), and the administrative functions of the Institute are within the PSC directorate. Director: Rodney Gerig Associate Director: Hendrik Weerts ( Director of High Energy Physics Division) Associate Director: Sasha Zholents (Director of Accelerator Systems Division) Associate Director: Robert Janssens ( Director of Argonne Physics Division)

326

Institute for Molecular Engineering doubles size of founding faculty with  

NLE Websites -- All DOE Office Websites (Extended Search)

News News Press Releases Feature Stories In the News Experts Guide Media Contacts Social Media Photos Videos Fact Sheets, Brochures and Reports Summer Science Writing Internship Giulia Galli is another joint appointment to Argonne and the University of Chicago's Institute for Molecular Engineering. Galli creates computational methods to design new materials for more efficient energy generation and to simulate the behavior of water. Click to enlarge. Giulia Galli is another joint appointment to Argonne and the University of Chicago's Institute for Molecular Engineering. Galli creates computational methods to design new materials for more efficient energy generation and to simulate the behavior of water. Click to enlarge. Cleland specializes in quantum computing, quantum communication and quantum sensors, all of which depend upon harnessing the peculiar properties of quantum mechanics, the physics that dominates the atomic world and has recently been shown to apply to macroscopic mechanical objects as well as electrical circuits. Pictured above is a quantum machine. Click to enlarge.

327

Institute of Metals Lecture  

Science Conference Proceedings (OSTI)

We will show that with the study of "Quantum Aerosols" we can gain insight into ... Dr. Yacaman has been a researcher of the Institute of Physics of UNAM, where ...

328

Summer Institute - Testimonials  

Science Conference Proceedings (OSTI)

... working with them, even if it was such a short time, and touring the institution ... With good luck, I will bring some of my students to tour this facility next ...

2012-12-28T23:59:59.000Z

329

EMPLOYERS STRATEGIES Correctional institutions  

E-Print Network (OSTI)

agencies Advocacy groups Federal, state and local government United Way agencies/local branches of national agencies Environmental advocacy groups Environmental periodicals Federal government Regional, stateEMPLOYERS STRATEGIES Correctional institutions Court systems Federal, state and local government

Escher, Christine

330

JGI - Intro to Genomics 1  

NLE Websites -- All DOE Office Websites (Extended Search)

An Introduction to Genomics: The Human Genome and Beyond An Introduction to Genomics: The Human Genome and Beyond 1 | 2 | 3 | 4 | Next>> What is genomics? THE HUMAN BODY consists of trillions of cells. Almost all contain an entire genome--the complete set of inherited genetic information encoded in our DNA. When humans reproduce, the parents' sperm and egg DNA combine to contribute a genome's worth of genetic information to the fertilized embryo. That same information is in each of the cells that eventually make up an organism. cell, DNA helix, and protein structure Some segments of DNA, called genes or "coding" DNA, contain the chemical recipe that determines particular traits; genetics is the study of the inheritance and function of these genes. Scientists now estimate that humans have about 30,000 genes, located along threadlike, tightly coiled

331

Argonne National Laboratory institutional plan FY 2002 - FY 2007.  

Science Conference Proceedings (OSTI)

The national laboratory system provides a unique resource for addressing the national needs inherent in the mission of the Department of Energy. Argonne, which grew out of Enrico Fermi's pioneering work on the development of nuclear power, was the first national laboratory and, in many ways, has set the standard for those that followed. As the Laboratory's new director, I am pleased to present the Argonne National Laboratory Institutional Plan for FY 2002 through FY 2007 on behalf of the extraordinary group of scientists, engineers, technicians, administrators, and others who are responsible for the Laboratory's distinguished record of achievement. Like our sister DOE laboratories, Argonne uses a multifaceted approach to advance U.S. R and D priorities. First, we assemble interdisciplinary teams of scientists and engineers to address complex problems. For example, our initiative in Functional Genomics will bring together biologists, computer scientists, environmental scientists, and staff of the Advanced Photon Source to develop complete maps of cellular function. Second, we cultivate specific core competencies in science and technology; this Institutional Plan discusses the many ways in which our core competencies support DOE's four mission areas. Third, we serve the scientific community by designing, building, and operating world-class user facilities, such as the Advanced Photon Source, the Intense Pulsed Neutron Source, and the Argonne Tandem-Linac Accelerator System. This Plan summarizes the visions, missions, and strategic plans for the Laboratory's existing major user facilities, and it explains our approach to the planned Rare Isotope Accelerator. Fourth, we help develop the next generation of scientists and engineers through educational programs, many of which involve bright young people in research. This Plan summarizes our vision, objectives, and strategies in the education area, and it gives statistics on student and faculty participation. Finally, we collaborate with other national laboratories, academia, and industry, both on scientific and engineering research and on the construction of major research facilities, such as the Spallation Neutron Source. This Plan describes some of the important collaborations currently under way. For more than 55 years, the University of Chicago has, as a public service, managed and operated Argonne under contract to the federal government. As a result, the Laboratory's research environment and performance have maintained a high standard of intellectual excellence and integrity, and the site--despite its age--is among the best maintained in the DOE complex. Currently, the University and Laboratory are strengthening their mutual ties at all levels, from student research and individual-investigator collaborations to joint appointments and strategic alliances. The Laboratory has also benefited greatly from its excellent relations with the state of Illinois, whose taxpayers have generously supported many scientific programs and facilities at Argonne. Because Argonne is a publicly funded institution operating under a performance-based contract, it is incumbent on us to conduct all our work and operate all our facilities cost-effectively and with distinction, while we maintain exemplary relations with the public (especially neighbors near the Illinois and Idaho sites); give the highest priority to the safety and health of our personnel and others on and near our site; protect the environment; and effectively implement security, counterintelligence, and export control measures. Our performance and plans in these areas are also discussed in this Plan.

Beggs, S. D.

2001-11-29T23:59:59.000Z

332

LANL Institutes - Institute of Geophysics and Planetary Physics  

NLE Websites -- All DOE Office Websites (Extended Search)

NEWS LIBRARY JOBS SITE MAP Emergency Maps Organization Goals Phone Search Science > LANL Institutes > Institute of Geophysics and Planetary Physics National Security Education...

333

JournalJoint Oceanographic Institutions for Deep Earth SamplingJoint Oceanographic Institutions for Deep Earth Sampling Vol. 25 No. 1-1999  

E-Print Network (OSTI)

properties of poly(2-ethyl-2-oxazoline) ­ Ayanna Bernard 17. Complex decision making in machine maintenance ­ Todd Spencer 35. Membranes for Olefin Paraffin Separations ­ Mita Das 36. High Aspect Ratio Mixed Matrix Membranes ­ JR Johnson 37. Cross-linkable Hollow Fiber Membranes for Natural Gas Purification

334

JournalJoint Oceanographic Institutions for Deep Earth SamplingJoint Oceanographic Institutions for Deep Earth Sampling Vol. 26 No. 1-2000  

E-Print Network (OSTI)

with the Kerguelen hot spot is indicated in light stipple, and lamprophyres as diamonds, as they have appeared) in Sep- tember 1999 to start the systems, check the status, and collect initial data. The initial as well as volcanic output is affected by the changes in the force system at the subduction interface

335

JournalJoint Oceanographic Institutions for Deep Earth SamplingJoint Oceanographic Institutions for Deep Earth Sampling Vol. 25 No. 2-1999  

E-Print Network (OSTI)

Network for the Smart Grid: Experi- mental System Architecture, Control Algorithms, Security- tacks. 15. "Distributed Intrusion Detection System in a Multi-Layer Network Architecture of Smart GridsIEEE TRANSACTIONS ON SMART GRID, VOL. 2, NO. 4, DECEMBER 2011 643 Guest Editorial Cyber, Physical

336

Genomics Division Home  

NLE Websites -- All DOE Office Websites (Extended Search)

PIs PIs Mark Biggin Jim Bristow Jan-Fang Cheng Inna Dubchak Suzanna Lewis Chris Mungall Len Pennacchio Eddy Rubin Axel Visel Divisional Information Support Staff Seminars Diversity Directory Contact Us The characterization and analysis of genome sequences from such diverse organisms as humans to the most primitive soil microbe represent a watershed opportunity for biology. The Genomics Division is taking advantage of this wealth of new information. While it is well known that DNA encodes the basic blue print of life, it is not known how best to interpret most of this information. To address this question, laboratories within the division are developing computational, biochemical, genetic, and imaging methods to decipher the complex sequence motifs that control RNA transcription, DNA replication, and chromosome structure. The Division is

337

JOINT APPENDICES 2005 BUILDING ENERGY  

E-Print Network (OSTI)

.47 is the American National Standards Institute document entitled "Gas-Fired Central Furnaces," 2001 (ANSI Z21-factor of the frame. Center of glass U-factor is not used in Title 24 compliance. CENTRAL FAN-INTEGRATED VENTILATION SYSTEM is a central forced air heating and/or cooling system which is intended to operate on a regular

338

Selection of stirling engine parameter and modes of joint operation with the Topaz II  

SciTech Connect

In addition to a high-temperature thermionic conversion cycle, application of a low-temperature machine cycle, such as the Stirling engine, is being considered. To select the optimum mode for joint operation of the Topaz II system and Stirling engine, output electric parameters are obtained as a function of thermal power released in the TFE fuel cores. The hydraulic diagram used for joint operation of the Topaz II and the Stirling engine is considered. Requirements to hydraulic characteristics of the Stirling engine heat exchanges are formulated. Scope of necessary modifications to mount the Stirling Engine on the Topaz II is estimated. {copyright} {ital 1996 American Institute of Physics.}

Kirillov, E.Y.; Ogloblin, B.G.; Shalaev, A.I. [Central Design Bureau of Machine Building, Krasnogvardeyskaya Square 3, St. Petersburg, (Russia) 195272

1996-03-01T23:59:59.000Z

339

Joint torsion of several commuting operators.  

E-Print Network (OSTI)

We introduce the notion of joint torsion for several commuting operators satisfying a Fredholm condition. This new secondary invariant takes values in the group of invertibles of a field. It is constructed by comparing determinants associated with different filtrations of a Koszul complex. Our notion of joint torsion generalizes the Carey-Pincus joint torsion of a pair of commuting Fredholm operators. As an example, under more restrictive invertibility assumptions, we show that the joint torsion recovers the multiplicative Lefschetz numbers. Furthermore, in the case of Toeplitz operators over the polydisc we provide a link between the joint torsion and the Cauchy integral formula. We will also consider the algebraic properties of the joint torsion. They include a cocycle property, a symmetry property, a triviality property and a multiplicativity property. The proof of these results relies on a quite general comparison theorem for vertical and horizontal torsion isomorphisms associated with certain diagrams of chain complexes.

Jens Kaad

340

A physical map of the papaya genome with integrated genetic map and genome sequence  

E-Print Network (OSTI)

As a part of the genome sequencing project, we constructed ational papaya whole genome sequencing may be carried out inframework to guide the genome sequencing of related species.

2009-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


341

Comparative genomic analysis of fungal genomes reveals intron-rich ancestors  

E-Print Network (OSTI)

remain debated. Genome sequencing and comparative analysisInternational Human Genome Sequencing Consortium: Finishingreinhardtii genome structure using large-scale sequencing of

Stajich, Jason E; Dietrich, Fred S; Roy, Scott W

2007-01-01T23:59:59.000Z

342

Mitochondrial genome sequences and comparative genomics of Phytophthora ramorum and P. sojae  

E-Print Network (OSTI)

sequences and comparative genomics of Phytophthora ramorumAnnotation and comparative genomics - Annotation of codingtools for comparative genomics. Nuc Acids Res July 1:32:

Martin, Frank N.; Douda, Bensasson; Tyler, Brett M.; Boore, Jeffrey L.

2007-01-01T23:59:59.000Z

343

Coral Reef Genomics: Developing tools for functional genomics of coral symbiosis  

E-Print Network (OSTI)

Coral Reef Genomics: Developing toolsfor functional genomics of coral symbiosis Jodi SCHWARZ 1 ,symbiosis functional genomics cDNA microarray ABSTRACT

Schwarz, Jodi; Brokstein, Peter; Manohar, Chitra; Coffroth, Mary Alice; Szmant, Alina; Medina, Monica

2008-01-01T23:59:59.000Z

344

Transcriptomic and Metagenomic Exploration of Agave Drought and Stress Tolerance  

E-Print Network (OSTI)

Energy Joint Genome Institute, Walnut Creek, CA Genomics Division, Lawrence Berkeley National Lab, Berkeley, CA CINVESTAV, Irapuato, Guanajuato, MexicoEnergy Joint Genome Institute, Walnut Creek, CA 2 Genomics Division, Lawrence Berkeley National Lab, Berkeley, CA 3 CINVESTAV, Irapuato, Guanajuato, Mexico

Gross, Stephen

2013-01-01T23:59:59.000Z

345

Agave Transcriptomes and microbiomes for bioenergy research  

E-Print Network (OSTI)

Energy Joint Genome Institute, Walnut Creek, CA Genomics Division, Lawrence Berkeley National Lab, Berkeley, CA CINVESTAV, Irapuato, Guanajuato, MexicoEnergy Joint Genome Institute, Walnut Creek, CA 2 Genomics Division, Lawrence Berkeley National Lab, Berkeley, CA 3 CINVESTAV, Irapuato, Guanajuato, Mexico

Gross, Stephen

2013-01-01T23:59:59.000Z

346

NIST Joint Cloud and Big Data Workshop  

Science Conference Proceedings (OSTI)

NIST Joint Cloud and Big Data Workshop. Purpose: ... The second and third days of the workshop focused on the intersection of Cloud and Big Data. ...

2013-01-31T23:59:59.000Z

347

Joint Outreach Task Group Calendar: September 2013  

Energy.gov (U.S. Department of Energy (DOE))

Joint Outreach Task Group (JOTG)has created a monthly calendar of community events to facilitate interagency and community involvement in these events. September 2013

348

U.S.-Japan Joint Statement  

NLE Websites -- All DOE Office Websites (Extended Search)

Release August 7, 2003 2003817 STATEMENT BY PHILIP T. REEKER, DEPUTY SPOKESMAN Joint Statement of The United States and Japan on High-Level Consultations on Climate Change...

349

A ”JOINT+MARGINAL” APPROACH TO PARAMETRIC ...  

E-Print Network (OSTI)

the cost vector (of the objective function to optimize) are random variables with joint distribution ?, some bounds on the expected optimal value have been ...

350

High-temperature brazed ceramic joints  

DOE Patents (OSTI)

High-temperature joints formed from metallized ceramics are disclosed wherein the metal coatings on the ceramics are vacuum sputtered thereon.

Jarvinen, Philip O. (Amherst, NH)

1986-01-01T23:59:59.000Z

351

Joint minimization with alternating Bregman proximity operators  

E-Print Network (OSTI)

Dec 28, 2004 ... Joint minimization with alternating Bregman proximity operators. H. H. Bauschke (hbauschk ***at*** uoguelph.ca) P. L. Combettes (plc ***at*** ...

352

Joint Actinide Shock Physics Experimental Research | National...  

National Nuclear Security Administration (NNSA)

Home > About Us > Our Programs > Defense Programs > Office of Research, Development, Test Capabilities and Evaluation > Office of Research and Development > Facilities > Joint...

353

Collaborations and Joint R&D  

Collaborations and Joint R&D. R&D Collaborations Map. These stories highlight some of the ways Argonne has worked with industrial companies to improve processes ...

354

USDA-DOE Make Available $4 Million for Biomass Genomics Research |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

USDA-DOE Make Available $4 Million for Biomass Genomics Research USDA-DOE Make Available $4 Million for Biomass Genomics Research USDA-DOE Make Available $4 Million for Biomass Genomics Research October 12, 2006 - 9:08am Addthis ST. LOUIS, MO -- The U.S. Departments of Energy and Agriculture (DOE and USDA) today announced $4 million for bio-based fuels research that will accelerate the development of alternative fuels. The departments issued a solicitation for research proposals for new plant feedstock genomics research projects. Dr. Raymond L. Orbach, DOE Under Secretary for Science, made the announcement at Advancing Renewable Energy: An American Rural Renaissance, a conference jointly hosted by the two agencies in St. Louis. "We are seeking to accelerate research breakthroughs that contribute towards making biofuels a cost-effective alternative to fossil fuels, with

355

Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy April 23, 2012 - 2:25pm Addthis The governments of the United States of America and the Republic of Iraq reaffirmed their commitment to joint cooperation in the areas of oil production and export, natural gas, electricity, and critical energy infrastructure protection during the inaugural meeting of the Joint Coordinating Committee (JCC) on Energy on April 23, 2012. This meeting, held at the U.S. Department of Energy, was co-chaired by Iraqi Deputy Prime Minister for Energy Dr. Hussain Al Shahristani and U.S. Deputy Secretary of Energy Daniel Poneman and Special Envoy and Coordinator for International Energy Affairs at the U.S. Department of State Ambassador

356

Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy April 23, 2012 - 2:25pm Addthis The governments of the United States of America and the Republic of Iraq reaffirmed their commitment to joint cooperation in the areas of oil production and export, natural gas, electricity, and critical energy infrastructure protection during the inaugural meeting of the Joint Coordinating Committee (JCC) on Energy on April 23, 2012. This meeting, held at the U.S. Department of Energy, was co-chaired by Iraqi Deputy Prime Minister for Energy Dr. Hussain Al Shahristani and U.S. Deputy Secretary of Energy Daniel Poneman and Special Envoy and Coordinator for International Energy Affairs at the U.S. Department of State Ambassador

357

Integrated Genome-Based Studies of Shewanella Ecophysiology  

SciTech Connect

Integration of bioinformatics and experimental techniques was applied to mapping and characterization of the key components (pathways, enzymes, transporters, regulators) of the core metabolic machinery in Shewanella oneidensis and related species with main focus was on metabolic and regulatory pathways involved in utilization of various carbon and energy sources. Among the main accomplishments reflected in ten joint publications with other participants of Shewanella Federation are: (i) A systems-level reconstruction of carbohydrate utilization pathways in the genus of Shewanella (19 species). This analysis yielded reconstruction of 18 sugar utilization pathways including 10 novel pathway variants and prediction of > 60 novel protein families of enzymes, transporters and regulators involved in these pathways. Selected functional predictions were verified by focused biochemical and genetic experiments. Observed growth phenotypes were consistent with bioinformatic predictions providing strong validation of the technology and (ii) Global genomic reconstruction of transcriptional regulons in 16 Shewanella genomes. The inferred regulatory network includes 82 transcription factors, 8 riboswitches and 6 translational attenuators. Of those, 45 regulons were inferred directly from the genome context analysis, whereas others were propagated from previously characterized regulons in other species. Selected regulatory predictions were experimentally tested. Integration of this analysis with microarray data revealed overall consistency and provided additional layer of interactions between regulons. All the results were captured in the new database RegPrecise, which is a joint development with the LBNL team. A more detailed analysis of the individual subsystems, pathways and regulons in Shewanella spp included bioinfiormatics-based prediction and experimental characterization of: (i) N-Acetylglucosamine catabolic pathway; (ii)Lactate utilization machinery; (iii) Novel NrtR regulator of NAD biosynthesis; (iv) HexR-controlled global regulon in central metabolism. In addition to numerous specific findings contributing to basic understanding of ecophysiology and evolution of Shewanella, the key components of the integrative genomic methodology of general utility for the community were optimized, validated and disseminated.

Andrei L. Osterman, Ph.D.

2012-12-17T23:59:59.000Z

358

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

AAI Home AAI Home Welcome Accelerators at Argonne Mission Organization History Document Collection Conferences & Workshops Beams and Applications Seminar Argonne-Fermilab Collaboration Lee Teng Scholarship Program Useful Links Argonne Accelerator Institute In 2006, Argonne Laboratory Director Robert Rosner formed the AAI as a focal point for accelerator initiatives. The institute works to utilize Argonne's extensive accelerator resources, to enhance existing facilities, to determine the future of accelerator development and construction, and to oversee a dynamic and acclaimed accelerator physics portfolio. More Information for: Members * Students Industrial Collaborators - Working with Argonne Link to: Accelerators for America's Future Upcoming Events and News 4th International Particle Accelerator Conference (IPAC'13)

359

The Rational Design of Security Institutions: Effects of Institutional Design on Institutional Performance .  

E-Print Network (OSTI)

??Based on the assumption that security institutions are designed rationally, I study the variations in design schemes and their possible effects on institutional performance. Military… (more)

Tandon, Aakriti A.

2012-01-01T23:59:59.000Z

360

Biofluid lubrication for artificial joints  

E-Print Network (OSTI)

This research investigated biofluid lubrication related to artificial joints using tribological and rheological approaches. Biofluids studied here represent two categories of fluids, base fluids and nanostructured biofluids. Base fluids were studied through comparison of synthetic fluids (simulated body fluid and hyaluronic acid) as well as natural biofluids (from dogs, horses, and humans) in terms of viscosity and fluid shear stress. The nano-structured biofluids were formed using molecules having well-defined shapes. Understanding nano-structured biofluids leads to new ways of design and synthesis of biofluids that are beneficial for artificial joint performance. Experimental approaches were utilized in the present research. This includes basic analysis of biofluids’ property, such as viscosity, fluid shear stress, and shear rate using rheological experiments. Tribological investigation and surface characterization were conducted in order to understand effects of molecular and nanostructures on fluid lubrication. Workpiece surface structure and wear mechanisms were investigated using a scanning electron microscope and a transmission electron microscope. The surface topography was examined using a profilometer. The results demonstrated that with the adding of solid additives, such as crown ether or fullerene acted as rough as the other solids in the 3-body wear systems. In addition, the fullerene supplied low friction and low wear, which designates the lubrication purpose of this particular particle system. This dissertation is constructed of six chapters. The first chapter is an introduction to body fluids, as mentioned earlier. After Chapter II, it examines the motivation and approach of the present research, Chapter III discusses the experimental approaches, including materials, experimental setup, and conditions. In Chapter IV, lubrication properties of various fluids are discussed. The tribological properties and performance nanostructured biofluids are discussed in Chapter V, followed by summary and conclusions in Chapter VI.

Pendelton, Alice Mae

2008-12-01T23:59:59.000Z

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


361

Stockholm Environment Institute (SEI) | Open Energy Information  

Open Energy Info (EERE)

Stockholm Environment Institute (SEI) (Redirected from Stockholm Environment Institute) Jump to: navigation, search Logo: Stockholm Environment Institute Name Stockholm Environment...

362

Institutional Research & Development | National Nuclear Security...  

National Nuclear Security Administration (NNSA)

& Technology Programs > Office of Advanced Simulation and Computing and Institutional R&D Programs > Institutional Research & Development Institutional Research & Development...

363

Computational methods and analyses in comparative genomics and epigenomics  

E-Print Network (OSTI)

promise of comparative genomics in mammals. Science, 286,homology relationships. Genomics, Dehal, P. and Boore, J.to plant comparative genomics. Genome Research, 13(5), 999–

Peng, Qian

2012-01-01T23:59:59.000Z

364

Salt Stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics approach  

E-Print Network (OSTI)

2002. Integrating cancer genomics and proteomics in theWeb site for comparative genomics. Genome Res 15:1015-22.Hildenborough: An integrated genomics approach. Aindrila

Mukhopadhyay, Aindrila

2010-01-01T23:59:59.000Z

365

Single Cell Whole Genome Amplification  

NLE Websites -- All DOE Office Websites (Extended Search)

Single Cell Whole Genome Amplification Single Cell Whole Genome Amplification of Uncultivated Organisms Mircea Podar , Martin Keller , and Philip Hugenholtz (* ü ) Abstract Whole genome amplification of single cells is emerging as a powerful technique for accessing the genomes of individual members of microbial communi- ties without the complication of identifying the source of sequence data posed by shotgun sequencing of environmental samples (metagenomics). This method holds particular promise for the molecular unveiling of uncultivated organisms that com- prise the bulk of the microbial diversity and functionality on our planet. 1 Introduction Over the last two decades, it has become increasingly apparent that microbial diversity

366

ORNL Genome Analysis Pipeline - Eukaryotic  

NLE Websites -- All DOE Office Websites (Extended Search)

Grail (Microbial Gene Prediction System Internet Link) GrailEXP Genome Analysis Pipeline DomainParser PROSPECT (PROtein Structure Prediction and Evaluation Computer...

367

genome109280 634..641  

NLE Websites -- All DOE Office Websites (Extended Search)

(http: www.phytozome.net), Selaginella moellendorffii (http:www. phytozome.net), Sorghum bicolor (http:genome.jgi-psf.org Sorbi1), Vitis vinifera (http:...

368

Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans  

E-Print Network (OSTI)

PLoS BIOLOGY Population Genomics: Whole-Genome Analysis ofwww.plosbiology.org Population Genomics of D. simulans Table11 | e310 Population Genomics of D. simulans Table S15. GO

2007-01-01T23:59:59.000Z

369

High temperature ceramic/metal joint structure  

DOE Patents (OSTI)

A high temperature turbine engine includes a hybrid ceramic/metallic rotor member having ceramic/metal joint structure. The disclosed joint is able to endure higher temperatures than previously possible, and aids in controlling heat transfer in the rotor member.

Boyd, Gary L. (Tempe, AZ)

1991-01-01T23:59:59.000Z

370

LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan To address the challenges associated with pursuing commercial nuclear power plant operations beyond 60 years, the U.S. Department of Energy's (DOE) Office of Nuclear Energy (NE) and the Electric Power Research Institute (EPRI) have established separate but complementary research and development programs: DOE-NE's Light Water Reactor Sustainability (LWRS) Program and EPRI's Long-Term Operations (LTO) Program. To ensure that a proper linkage is maintained between the programs, DOE-NE and EPRI executed a Memorandum of Understanding in late 2010 to "establish guiding principles under which research activities (between LWRS and LTO) could be

371

LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan To address the challenges associated with pursuing commercial nuclear power plant operations beyond 60 years, the U.S. Department of Energy's (DOE) Office of Nuclear Energy (NE) and the Electric Power Research Institute (EPRI) have established separate but complementary research and development programs: DOE-NE's Light Water Reactor Sustainability (LWRS) Program and EPRI's Long-Term Operations (LTO) Program. To ensure that a proper linkage is maintained between the programs, DOE-NE and EPRI executed a Memorandum of Understanding in late 2010 to "establish guiding principles under which research activities (between LWRS and LTO) could be

372

Activities of the U.S.-Japan Safety Monitor Joint Working Group  

SciTech Connect

This paper documents the activities of the US-Japan exchange in the area of personnel safety at magnetic and laser fusion experiments. A near-miss event with a visiting scientist to the US in 1992 was the impetus for forming the Joint Working Group on Fusion Safety. This exchange has been under way for over ten years and has provided many safety insights for both US and Japanese facility personnel at national institutes and at universities. The background and activities of the Joint Working Group are described, including the facilities that have been visited for safety walkthroughs, the participants from both countries, and the main safety issues examined during visits. Based on these visits, some operational safety ideas to enhance experiment safety are given. The near-term future plans of the Safety Monitor Joint Working Group are also discussed.

Savercool, R.L. [General Atomics (United States); Cadwallader, L.C. [Idaho National Engineering and Environmental Laboratory (United States)

2005-05-15T23:59:59.000Z

373

Integrated Joint Actuator for Serpentine Robots  

E-Print Network (OSTI)

Abstract—Serpentine robots, also sometimes called “snake robots, ” are slender, multisegmented vehicles designed to provide greater mobility than conventional wheeled or tracked robots. Serpentine robots are typically comprised of three or more rigid segments connected by two or three degrees of freedom joints. The segments typically have powered wheels, tracks, or legs to propel the vehicle forward; the joints may be powered or unpowered. We have developed a joint actuator system that is highly optimized for use in serpentine robots. This article first presents an analysis of the particular requirements for joint actuators in serpentine robots. We then compare existing actuators against those requirements and show that pneumatic bellows are ideally suited for this application. Following this analysis, this paper introduces our fully functional, pneumatically operated actuation system that is efficiently integrated in the space occupied by a joint. This system,

Grzegorz Granosik; Johann Borenstein; Senior Member

2005-01-01T23:59:59.000Z

374

Human Genome Program Image Gallery (from genomics.energy.gov)  

DOE Data Explorer (OSTI)

This collection contains approximately 240 images from the genome programs of DOE's Office of Science. The images are divided into galleries related to biofuels research, systems biology, and basic genomics. Each image has a title, a basic citation, and a credit or source. Most of the images are original graphics created by the Genome Management Information System (GMIS). GMIS images are recognizable by their credit line. Permission to use these graphics is not needed, but please credit the U.S. Department of Energy Genome Programs and provide the website http://genomics.energy.gov. Other images were provided by third parties and not created by the U.S. Department of Energy. Users must contact the person listed in the credit line before using those images. The high-resolution images can be downloaded.

375

Indo-US Joint Clean Energy Research and Development Center: Budget Form  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Indo-US Joint Clean Energy Research and Development Indo-US Joint Clean Energy Research and Development Center: Budget Application Form Instructions:  Indian consortia should complete Section I  Each Indian consortia partner should individually fill in Section II  The Budget Summary in Section III should be filled in collectively by the consortia partners and the same information should be reflected in point 7(Section I) of the application form SECTION I 1. Title of the Proposal: 2. Area: 3. Date submitted: 4. Lead Institution and Principal Investigator (name, address, e-mail, phone numbers): (i) India: (ii) US: 5. Consortia partners' contact information: Name of the Partnering Institution Address (Street address, State, Country, Zip

376

Closing Keynote Presentation on the Genomics of Energy and the Environment (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Steve Benner, a distinguished chemist at the Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology, provides the closing keynote address for the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Benner, Stephen [Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology

2012-03-22T23:59:59.000Z

377

Genome Majority Vote (GMV), Version 0.x  

NLE Websites -- All DOE Office Websites (Extended Search)

Genome Majority Vote (GMV), Version 0.x Genome Majority Vote (GMV), Version 0.x The pipeline runs PRODIGAL gene predictions on all genomes, runs pan-reciprocal BLAST, and...

378

The evolution of genome size in ants  

E-Print Network (OSTI)

for future whole-genome sequencing projects. Page 1 of 9 (genotyping to whole-genome sequencing [1-3]. The genomeconsideration for whole-genome sequencing programs, our

Tsutsui, Neil D; Suarez, Andrew V; Spagna, Joseph C; Johnston, J Spencer

2008-01-01T23:59:59.000Z

379

One Bacterial Cell, One Complete Genome  

E-Print Network (OSTI)

Bader JS, et al. (2005) Genome sequencing in microfabricatedDR (2006) Whole-genome re-sequencing. Curr Opin Genet DevSingle cell MDA and genome sequencing The yellow portion of

Woyke, Tanja

2010-01-01T23:59:59.000Z

380

Rearrangement Phylogeny of Genomes in Contig Form  

Science Conference Proceedings (OSTI)

There has been a trend in increasing phylogenetic coverage for genome sequencing while decreasing the sequencing coverage for each genome. With lower coverage, there is an increasing number of genomes being published in contig form. Rearrangement algorithms, ...

Adriana Muñoz; David Sankoff

2009-04-01T23:59:59.000Z

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


381

Tissue sampling and standards for vertebrate genomics  

E-Print Network (OSTI)

and standards for vertebrate genomics. GigaScience 2012 1:8.transition to conservation genomics. TIG 2010, 26:177–187.Siemens DH: Ecological genomics––changing perspectives on

2012-01-01T23:59:59.000Z

382

PLATCOM: a platform for computational comparative genomics  

E-Print Network (OSTI)

The exponential accumulation of genomic sequence data demands systematic analysis of genetic information and requires use of various computational approaches to handle such huge sets of genomic data. Comparative genomics,

Kwangmin Choi; Jeong-hyeon Choi; Amit Saple; Zhiping Wang; Jason Lee; Sun Kim

2005-01-01T23:59:59.000Z

383

Genome Halving by Block Interchange  

E-Print Network (OSTI)

We address the problem of finding the minimal number of block interchanges (exchange of two intervals) required to transform a duplicated linear genome into a tandem duplicated linear genome. We provide a formula for the distance as well as a polynomial time algorithm for the sorting problem.

Thomas, Antoine; Varré, Jean-Stéphane

2011-01-01T23:59:59.000Z

384

United States-Japan Joint Nuclear Energy Action Plan | Department...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

United States-Japan Joint Nuclear Energy Action Plan United States-Japan Joint Nuclear Energy Action Plan An outline on the United States and Japan's joint nuclear energy action...

385

U.S.-Brazil Strategic Energy Dialogue Joint Report | Department...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Brazil Strategic Energy Dialogue Joint Report U.S.-Brazil Strategic Energy Dialogue Joint Report First Joint Report to Presidents on U.S.-Brazil Strategic Energy Dialogue.pdf More...

386

Transportation Institutional Plan  

SciTech Connect

This Institutional Plan is divided into three chapters. Chapter 1 provides background information, discusses the purposes of the Plan and the policy guidance for establishing the transportation system, and describes the projected system and the plans for its integrated development. Chapter 2 discusses the major participants who must interact to build the system. Chapter 3 suggests mechanisms for interaction that will foster wide participation in program planning and implementation and provides a framework for managing and resolving the issues related to development and operation of the transportation system. A list of acronyms and a glossary are included for the reader's convenience. Also included in this Plan are four appendices. Of particular importance is Appendix A, which includes detailed discussion of specific transportation issues. Appendices B, C, and D provide supporting material to assist the reader in understanding the roles of the involved institutions.

1986-08-01T23:59:59.000Z

387

Human Genome Research: Decoding DNA  

NLE Websites -- All DOE Office Websites (Extended Search)

Human Genome Research: Decoding DNA Human Genome Research: Decoding DNA Resources with Additional Information Charles DeLisi As head of DOE's Office of Health and Environmental Research, Charles DeLisi played a pivotal role in proposing and initiating the Human Genome Program in 1986. The U.S. Department of Energy (DOE) has historically been active in supporting human genome research. On September 10, 2003, Secretary of Energy Spencer Abraham presented the Secretary's Gold Award to Aristides Patrinos and Francis Collins for their leadership of the government's Human Genome Project. At DOE's Office of Science, Dr. Patrinos is the Associate Director for Biological and Environmental Research. He has been a researcher at the department's Oak Ridge National Laboratory and Brookhaven National Laboratory.

388

Sealed joint structure for electrochemical device  

DOE Patents (OSTI)

Several members make up a joint in a high-temperature electrochemical device, wherein the various members perform different functions. The joint is useful for joining multiple cells (generally tubular modules) of an electrochemical device to produce a multi-cell segment-in-series stack for a solid oxide fuel cell, for instance. The joint includes sections that bond the joining members to each other; one or more seal sections that provide gas-tightness, and sections providing electrical connection and/or electrical insulation between the various joining members. A suitable joint configuration for an electrochemical device has a metal joint housing, a first porous electrode, a second porous electrode, separated from the first porous electrode by a solid electrolyte, and an insulating member disposed between the metal joint housing and the electrolyte and second electrode. One or more brazes structurally and electrically connects the first electrode to the metal joint housing and forms a gas tight seal between the first electrode and the second electrode.

Tucker, Michael C; Jacobson, Craig P; De Jonghe, Lutgard C; Visco, Steven J

2013-05-21T23:59:59.000Z

389

Small Modular Fast Reactor Design Description Joint Effort  

NLE Websites -- All DOE Office Websites (Extended Search)

July 1, 2005 ANL-SMFR-1 July 1, 2005 ANL-SMFR-1 Small Modular Fast Reactor Design Description Joint Effort by Argonne National Laboratory (ANL) Commissariat a l'Energie Atomique (CEA) and Japan Nuclear Cycle Development Institute (JNC) Project Leaders Y. I. Chang and C. Grandy, ANL P. Lo Pinto, CEA M. Konomura, JNC Technical Contributors ANL: J. Cahalan, F. Dunn, M. Farmer, S. Kamal, L. Krajtl, A. Moisseytsev, Y. Momozaki, J. Sienicki, Y. Park, Y. Tang, C. Reed, C. Tzanos, S. Wiedmeyer, and W. Yang CEA: P. Allegre, J. Astegiano, F. Baque, L. Cachon, M. S. Chenaud, J-L Courouau, Ph. Dufour, J. C. Klein, C. Latge, C. Thevenot, and F. Varaine JNC: M. Ando, Y. Chikazawa, M. Nagamura, Y. Okano, Y. Sakamoto,

390

Joint InSynC-INCREASE Workshop 2010  

NLE Websites -- All DOE Office Websites (Extended Search)

Home Agenda Organizing Committee Workshop Contacts Home Agenda Organizing Committee Workshop Contacts Joint InSynC-INCREASE Workshop July 14-16, 2010 About INCREASE The Interdisciplinary Consortium for Research and Educational Access in Science and Engineering (INCREASE) is an organization to promote research in Historically Black Colleges and Universities (HBCUs) and other minority-serving institutions (MSIs), involving utilization of national user facilities - in particular, the National Synchrotron Light Source (NSLS) at Brookhaven National Laboratory - as well as to facilitate education and research training, especially for members of minority groups: African-Americans, Hispanics, and women. About InSynC The InSynC program enables high school teachers and students to gain remote access to experimenting with synchrotron beamtime through a competitive,

391

Institution Name Institution Name Address Place Zip Notes Website Region  

Open Energy Info (EERE)

Institute for the Built Environment CSU Institute for the Built Institute for the Built Environment CSU Institute for the Built Environment Oval Drive Fort Collins Colorado http www ibe colostate edu Rockies Area Colorado Renewable Energy Collaboratory Colorado Renewable Energy Collaboratory th Street Suite Denver Colorado http www coloradocollaboratory org Rockies Area Colorado School of Mines Colorado Energy Research Institute Colorado School of Mines Colorado Energy Research Institute Illinois Street Golden Colorado http www ceri mines org Rockies Area Denver University International Institute for Environment and Enterprise Denver University International Institute for Environment and Enterprise S University Blvd Denver Colorado http www du edu enviro Research htm Rockies Area EverSealed Windows Inc EverSealed Windows Inc Interlocken Drive Evergreen

392

Draft Genome Sequence  

NLE Websites -- All DOE Office Websites (Extended Search)

Draft Draft Genome Sequence of Serratia sp. Strain ATCC 39006, a Model Bacterium for Analysis of the Biosynthesis and Regulation of Prodigiosin, a Carbapenem, and Gas Vesicles Peter C. Fineran, a Marina C. Iglesias Cans, a Joshua P. Ramsay, b Nabil M. Wilf, b Desiree Cossyleon, a Matthew B. McNeil, a Neil R. Williamson, b Rita E. Monson, b S. Anette Becher, c Jo-Ann L. Stanton, d Kim Brügger, e Steven D. Brown, f George P. C. Salmond b Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand a ; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom b ; AgResearch Ltd., Invermay Agricultural Centre, Mosgiel, New Zealand c ; Department of Anatomy, University of Otago, Dunedin, New Zealand d ; EASIH, University of Cambridge, Addenbrooke's Hospital, Cambridge, United Kingdom e ; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge,

393

Yeast Ancestral Genome Reconstructions - CECM - Simon Fraser ...  

E-Print Network (OSTI)

on eukaryotic nuclear genomes are based on parsimony (some statistical methods have been used on mitochondrial or bacterial genomes, see Darling et al.

394

BMC Genomics BioMed Central  

E-Print Network (OSTI)

Research article What can you do with 0.1 × genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)

David A Rasmussen; Mohamed Af Noor

2009-01-01T23:59:59.000Z

395

Joint Electrical Utilities (Iowa) | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Electrical Utilities (Iowa) Joint Electrical Utilities (Iowa) Joint Electrical Utilities (Iowa) < Back Eligibility Investor-Owned Utility Local Government Municipal/Public Utility Rural Electric Cooperative Tribal Government Utility Savings Category Alternative Fuel Vehicles Hydrogen & Fuel Cells Buying & Making Electricity Water Home Weatherization Solar Wind Program Info State Iowa Program Type Environmental Regulations Provider Iowa Utilities Board Cities may establish utilities to acquire existing electric generating facilities or distribution systems. Acquisition, in this statute, is defined as city involvement, and includes purchase, lease, construction, reconstruction, extension, remodeling, improvement, repair, and equipping of the facility. This chapter does not limit the powers or authority of

396

United States and Japan Sign Joint Nuclear Energy Action Plan...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Japan Sign Joint Nuclear Energy Action Plan to Promote Nuclear Energy Cooperation United States and Japan Sign Joint Nuclear Energy Action Plan to Promote Nuclear Energy...

397

Joint Maintenance Status Report of Potomac Electric Power Company...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Maintenance Status Report of Potomac Electric Power Company amd PJM Interconnection, LLC Joint Maintenance Status Report of Potomac Electric Power Company amd PJM...

398

Enjoy The Benefits of Joint ASM/TMS Chapter Membership  

Science Conference Proceedings (OSTI)

Enjoy The Benefits of Joint ASM/TMS Chapter Membership. There are many benefits of being a part of the Joint ASM/TMS Student Program—scholarships, ...

399

EA-1945: Northern Mid-Columbia Joint Project; Grant, Douglas...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

5: Northern Mid-Columbia Joint Project; Grant, Douglas, and Chelan Counties, Washington EA-1945: Northern Mid-Columbia Joint Project; Grant, Douglas, and Chelan Counties,...

400

Second National Report for the Joint Convention on the Safety...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Second National Report for the Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management Second National Report for the Joint...

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


401

Fracture Mechanics of Solder Joint under Mechanical Fatigue  

Science Conference Proceedings (OSTI)

Structural similarities in solder joint used in these studies yet varying locations of cracking site suggest that fracture in solder joint is affected greatly by a subtle ...

402

United States -Japan Joint Nuclear Energy Action Plan | Department...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

United States -Japan Joint Nuclear Energy Action Plan United States -Japan Joint Nuclear Energy Action Plan President Bush of the United States and Prime Minister Koizumi of Japan...

403

OMB and CEQ Joint Memorandum on Environmental Collaboration and...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

OMB and CEQ Joint Memorandum on Environmental Collaboration and Conflict Resolution OMB and CEQ Joint Memorandum on Environmental Collaboration and Conflict Resolution This Office...

404

Fourth National Report for the Joint Convention on the Safety...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Fourth National Report for the Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management Fourth National Report for the Joint...

405

Projects Selected for Funding Under the Joint NYSERDA / DOE Energy...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Projects Selected for Funding Under the Joint NYSERDA DOE Energy Storage Initiative Projects Selected for Funding Under the Joint NYSERDA DOE Energy Storage Initiative New York...

406

Transcript of March 4, 2011 Joint Public Meeting | Department...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Transcript of March 4, 2011 Joint Public Meeting Transcript of March 4, 2011 Joint Public Meeting Official Transcript of Proceedings - Nuclear Regulatory Commission Transcript of...

407

TMS/ASM Joint Commission on Metallurgical Transactions  

Science Conference Proceedings (OSTI)

TMS/ASM Joint Commission on Metallurgical Transactions. The function of the Joint Commission is as follows: Consistent with the Purpose and Scope of ...

408

Third National Report for the Joint Convention on the Safety...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Third National Report for the Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management Third National Report for the Joint...

409

Joint Urban 2003: Indoor Measurements Final Data Report  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Urban 2003: Indoor Measurements Final Data Report Title Joint Urban 2003: Indoor Measurements Final Data Report Publication Type Report Year of Publication 2004 Authors...

410

National Report Joint Convention on the Safety of Spent Fuel...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

National Report Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management National Report Joint Convention on the Safety of Spent...

411

US - Brazil Binational Energy Working Group Joint Action Plan...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

US - Brazil Binational Energy Working Group Joint Action Plan US - Brazil Binational Energy Working Group Joint Action Plan brazilactionplan7202010.pdf More Documents &...

412

Secretary Bodman, Director Rumyantsev Issue Joint Statement on...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Bodman, Director Rumyantsev Issue Joint Statement on Bratislava Nuclear Security Initiatives Secretary Bodman, Director Rumyantsev Issue Joint Statement on Bratislava Nuclear...

413

Institute for Scientific Computing Research Annual Report for Fiscal Year 2003  

SciTech Connect

The University Relations Program (URP) encourages collaborative research between Lawrence Livermore National Laboratory (LLNL) and the University of California campuses. The Institute for Scientific Computing Research (ISCR) actively participates in such collaborative research, and this report details the Fiscal Year 2003 projects jointly served by URP and ISCR.

Keyes, D; McGraw, J

2004-02-12T23:59:59.000Z

414

List of all HEP Institutions  

NLE Websites -- All DOE Office Websites (Extended Search)

Top 500 Top 500 HEP and Astrophysics Institutions by Country This document lists the 500 major high-energy physics and astrophysics institutions, sorted by country. Each listing will show a [SPIRES Entry] which gives the full address and phone/fax/url of the institution in addition to links to papers in HEP and people in HEPNAMES. The [Home page], where known, takes you directly to the departmental home page. Alternatively try our INSTITUTIONS search page. This list of the top 500 institutions is chosen by the number of papers from each institution in the past 5 years. Click here for the full list of HEP institutions. Please send any comments, corrections, updates or information on new institutions to: inst@slac.stanford.edu. Last modified at 17:12:32 on 06/30/04.

415

Nome Joint Utility Systems | Open Energy Information  

Open Energy Info (EERE)

Joint Utility Systems Joint Utility Systems Jump to: navigation, search Name Nome Joint Utility Systems Place Alaska Utility Id 13642 Utility Location Yes Ownership M NERC Location AK Operates Generating Plant Yes Activity Generation Yes Activity Transmission Yes References EIA Form EIA-861 Final Data File for 2010 - File1_a[1] LinkedIn Connections CrunchBase Profile No CrunchBase profile. Create one now! This article is a stub. You can help OpenEI by expanding it. Utility Rate Schedules Grid-background.png Electrical Charge Residential Power Cost Equalization Average Rates Residential: $0.3600/kWh Commercial: $0.3310/kWh References ↑ "EIA Form EIA-861 Final Data File for 2010 - File1_a" Retrieved from "http://en.openei.org/w/index.php?title=Nome_Joint_Utility_Systems&oldid=411195

416

Climate Leaders Joint Venture | Open Energy Information  

Open Energy Info (EERE)

Leaders Joint Venture Leaders Joint Venture Jump to: navigation, search Name Climate Leaders' Joint Venture Place Dallas, Texas Product Tudor Investment and Camco International have partnered to create Climate Leaders' Joint Venture. They will have inital working capital of USD 10m, with Camco owning 60%. Coordinates 32.778155°, -96.795404° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":32.778155,"lon":-96.795404,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

417

The Joint Airport Weather Studies Project  

Science Conference Proceedings (OSTI)

The Joint Airport Weather Studies (JAWS) Project will investigate the microburst event, having 2–10 km spatial and 2–10 min temporal scales, at Denver's Stapleton International Airport during the summer of 1982. JAWS applications and technology ...

John McCarthy; James W. Wilson; T. Theodore Fujita

1982-01-01T23:59:59.000Z

418

ELEMENTS OF JOINT DESIGN FOR WELDING  

SciTech Connect

The design of joints which are to be fusion welded by any of the arc or gas processes is discussed. The designs are applicable to either manual or machine welding. (A.C.)

Koopman, K.H.

1958-06-01T23:59:59.000Z

419

Predictability of Seasonal Precipitation Using Joint Probabilities  

Science Conference Proceedings (OSTI)

This paper tests whether seasonal mean precipitation is predictable using a new method that estimates and analyzes joint probabilities. The new estimation method is to partition the globe into boxes, pool all data within the box to estimate a ...

M. Tugrul Yilmaz; Timothy DelSole

2010-04-01T23:59:59.000Z

420

Three New Manufacturing Innovation Institutes  

Science Conference Proceedings (OSTI)

... $200 million across five Federal agencies – Defense, Energy, Commerce, NASA ... a pilot institute headquartered in Youngstown, Ohio, the President ...

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


421

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Fermilab Collaboration Fermilab Collaboration Lee Teng Scholarship Program Useful Links The Argonne Accelerator Institute Historical Document Collection Document Access Guide The documents in this collection are held in several repositories, some of which have restricted access. This guide explains the different types of access, and specifies the access levels for each repository. Repositories Name Access Argonne National Laboratory Document Open Access Argonne Research Library Hard Copy Only Beam Dynamics Newsletter Open Access DOE Information Bridge Open Access IEEE Xplore Library Subscription Required JACoW Open Access Journal of Applied Physics Subscription Required Nuclear Instruments & Methods in Physics Research, Section A Subscription Required Physical Review A Subscription Required

422

Human genome. 1993 Program report  

SciTech Connect

The purpose of this report is to update the Human Genome 1991-92 Program Report and provide new information on the DOE genome program to researchers, program managers, other government agencies, and the interested public. This FY 1993 supplement includes abstracts of 60 new or renewed projects and listings of 112 continuing and 28 completed projects. These two reports, taken together, present the most complete published view of the DOE Human Genome Program through FY 1993. Research is progressing rapidly toward 15-year goals of mapping and sequencing the DNA of each of the 24 different human chromosomes.

Not Available

1994-03-01T23:59:59.000Z

423

Draft Transportation Institutional Plan  

SciTech Connect

The Department of Energy recognizes that the success of its program to develop and implement a national system for nuclear waste management and disposal depends on broad-based public understanding and acceptance. While each program element has its particular sensitivity, the transportation of the waste may potentially affect the greatest number of people, and accordingly is highly visible and potentially issue-laden. Therefore, the Office of Civilian Radioactive Waste Management has developed this Transportation Institutional Plan to lay the foundation for interaction among all interested parties for the purpose of identifying and resolving issues of concern. The Plan is divided into four chapters. Chapter 1 provides bachground information and discusses the purpose of the Plan and the policy guidance for establishing the transportation system. Chapter 2 introduces the major participants who must interact to build both the system itself and the consensus philosophy that is essential for effective operations. Chapter 3 suggests mechanisms for interaction that will ensure wide participation in program planning and implementation. And, finally, Chapter 4 suggests a framework for managing and resolving the issues related to development and operation of the transportation system. A list of acronyms and a glossary are included for the reader's convenience. The Plan's appendices provide supporting material to assist the reader in understanding the roles of the involved institutions. 4 figs., 1 tab.

1985-09-01T23:59:59.000Z

424

A meeting of the minds on the genome project  

SciTech Connect

There has been some resentment over the the rapidly expanding budget for the Human Genome Project. The genome project is budgeted at nearly $90 million at NIH and $46 million at DOE. Some critics believe this is not being fair to other research efforts. There has also been some differences in opinion in the project's research plans. Bernard Davis of Harvard Medical School supports the first goal of the genome project, mapping the human chromosomes, and thinks sequencing model organisms is a good idea. However, he can't see the value in working out every nucleotide base in the human genome. But, once it was impressed upon Davis that no one is contemplating all-out sequencing for at least 5 years, and even then only if the cost comes down, he endorsed the current plan to map and partially sequence complementary DNAs, or expressed genes. Another skeptic, Don Brown of Carnegie Institution, is opposed to the way the project is organised. Brown's biggest objection is to targeted research, especially the creation of centers to carry out specific research tasks.

Pool, R.

1990-11-09T23:59:59.000Z

425

Information entropy based methods for genome comparison  

Science Conference Proceedings (OSTI)

A plethora of biologically useful information lies obscured in the genomes of organisms. Encoded within the genome of an organism is the information about its evolutionary history. Evolutionary signals are scattered throughout the genome. Bioinformatics ... Keywords: clustering, genome comparison, segmentation, sequence alignment, shannon entropy

Mehul Jani; Rajeev K. Azad

2013-05-01T23:59:59.000Z

426

Genomic Aspects of Research Involving Polyploid Plants  

Science Conference Proceedings (OSTI)

Almost all extant plant species have spontaneously doubled their genomes at least once in their evolutionary histories, resulting in polyploidy which provided a rich genomic resource for evolutionary processes. Moreover, superior polyploid clones have been created during the process of crop domestication. Polyploid plants generated by evolutionary processes and/or crop domestication have been the intentional or serendipitous focus of research dealing with the dynamics and consequences of genome evolution. One of the new trends in genomics research is to create synthetic polyploid plants which provide materials for studying the initial genomic changes/responses immediately after polyploid formation. Polyploid plants are also used in functional genomics research to study gene expression in a complex genomic background. In this review, we summarize the recent progress in genomics research involving ancient, young, and synthetic polyploid plants, with a focus on genome size evolution, genomics diversity, genomic rearrangement, genetic and epigenetic changes in duplicated genes, gene discovery, and comparative genomics. Implications on plant sciences including evolution, functional genomics, and plant breeding are presented. It is anticipated that polyploids will be a regular subject of genomics research in the foreseeable future as the rapid advances in DNA sequencing technology create unprecedented opportunities for discovering and monitoring genomic and transcriptomic changes in polyploid plants. The fast accumulation of knowledge on polyploid formation, maintenance, and divergence at whole-genome and subgenome levels will not only help plant biologists understand how plants have evolved and diversified, but also assist plant breeders in designing new strategies for crop improvement.

Yang, Xiaohan [ORNL; Ye, Chuyu [ORNL; Tschaplinski, Timothy J [ORNL; Wullschleger, Stan D [ORNL; Tuskan, Gerald A [ORNL

2011-01-01T23:59:59.000Z

427

Synthetic Genomics: Options for Governance  

E-Print Network (OSTI)

Gene and genome synthesis, that is, constructing long stretches of DNA from constituent chemicals, provides scientists with new and unparalleled capabilities both for understanding biology and for using it for beneficial ...

Garfinkel, Michele

2007-10-17T23:59:59.000Z

428

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence  

E-Print Network (OSTI)

and physical maps, genome sequencing, marker-assistedof scaffolds during genome sequencing. To use RJs in SNPallows for deep genome coverage sequencing, a prerequisite

2011-01-01T23:59:59.000Z

429

Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute  

E-Print Network (OSTI)

research into alternative, nonfossil energy sources. Among the options (nuclear, concentrated solar thermal, geothermal, hydroelectric,

Blanch, Harvey

2010-01-01T23:59:59.000Z

430

Higher Mahler measures (joint with Nobushige Kurokawa (Tokyo Institute of Technology),  

E-Print Network (OSTI)

://www.math.ualberta.ca/~mlalin Zetas and Limit Laws in Okinawa 2008 (j/w Kurokawa, Ochiai) Lal´in (U of A) Higher Mahler measures

Lalín, Matilde

431

The Joint BioEnergy Institute (JBEI): Developing New Biofuels by Overcoming Biomass Recalcitrance  

E-Print Network (OSTI)

to develop more sustainable energy sources is furthermorefor developing sustainable and renewable energy sources. For

Scheller, Henrik Vibe; Singh, Seema; Blanch, Harvey; Keasling, Jay D.

2010-01-01T23:59:59.000Z

432

The Joint BioEnergy Institute (JBEI): Developing New Biofuels by Overcoming Biomass Recalcitrance  

E-Print Network (OSTI)

New Biofuels by Overcoming Biomass Recalcitrance Henrik Vibeenergy stored in plant biomass. The papers in this volumefeedstocks development and biomass deconstruction. Keywords

Scheller, Henrik Vibe; Singh, Seema; Blanch, Harvey; Keasling, Jay D.

2010-01-01T23:59:59.000Z

433

Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute  

E-Print Network (OSTI)

transporation fuels. Currently, biofuels such as ethanol areefficiency of starch-based biofuels is however not optimal,address these roadblocks in biofuels production. JBEI draws

Blanch, Harvey

2010-01-01T23:59:59.000Z

434

The Joint BioEnergy Institute (JBEI): Developing New Biofuels by Overcoming Biomass Recalcitrance  

E-Print Network (OSTI)

JD (2009) Producing biofuels using polyketide synthases.JBEI): Developing New Biofuels by Overcoming Biomassthe next-generation of biofuels— liquid fuels derived from

Scheller, Henrik Vibe; Singh, Seema; Blanch, Harvey; Keasling, Jay D.

2010-01-01T23:59:59.000Z

435

Joint Hydraulic Institute/ASAP Letter of March 30th - Clarification of Point #2  

Energy.gov (U.S. Department of Energy (DOE))

We would like to clarify point #2 in the referenced letter, which addressed potential energy conservation standards for residential circulators.

436

Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute  

E-Print Network (OSTI)

Biomass as Feedstock for a Bioen- ergy and Bioproducts Industry: The Technical Feasibil-ity of a Billion-Ton Annual Supply,

Blanch, Harvey

2010-01-01T23:59:59.000Z

437

Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute  

E-Print Network (OSTI)

Berkeley, California 94720, ¿ Sandia National Laboratories,California 94305, and †† Sandia National Laboratories,National Laboratory (LBNL), Sandia National Laboratories (

Blanch, Harvey

2010-01-01T23:59:59.000Z

438

The Joint BioEnergy Institute (JBEI): Developing New Biofuels by Overcoming Biomass Recalcitrance  

E-Print Network (OSTI)

HScheller@lbl.gov S. Singh Sandia National Laboratories,National Laboratory, and Sandia National Laboratories work

Scheller, Henrik Vibe; Singh, Seema; Blanch, Harvey; Keasling, Jay D.

2010-01-01T23:59:59.000Z

439

Administrative Review of the Joint Institute for the Study of the Atmosphere and Oceans (JISAO)  

E-Print Network (OSTI)

for intellectual property protection and control through the UW TechTransfer office. The JISAO director and administrator are responsible for managing this process, in collaboration with the UW TechTransfer office

Rigor, Ignatius G.

440

Joint sets that enhance production from Middle and  

E-Print Network (OSTI)

E&P NOTE Joint sets that enhance production from Middle and Upper Devonian gas shales joint sets (J1 and J2 sets) as observed in outcrop, core, and borehole images. These joints formed close thermal matura- tion of organic matter. When present together, earlier J1 joints are crosscut by later J2

Engelder, Terry

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


441

NRDC and Sierra Club Joint Petition November 14, 2011  

E-Print Network (OSTI)

1 NRDC and Sierra Club Joint Petition November 14, 2011 JOINT PETITION OF THE NATURAL RESOURCES the Natural Resources Defense Council (NRDC) and Sierra Club jointly file this petition to request;2 NRDC and Sierra Club Joint Petition November 14, 2011 SB 1368 was signed into law on September 29, 2006

442

Institutional analysis for energy policy  

SciTech Connect

This report summarizes principles, techniques, and other information for doing institutional analyses in the area of energy policy. The report was prepared to support DOE's Regional Issues Identification and Assessment (RIIA) program. RIIA identifies environmental, health, safety, socioeconomic, and institutional issues that could accompany hypothetical future scenarios for energy consumption and production on a regional basis. Chapter 1 provides some theoretical grounding in institutional analysis. Chapter 2 provides information on constructing institutional maps of the processes for bringing on line energy technologies and facilities contemplated in RIIA scenarios. Chapter 3 assesses the institutional constraints, opportunities, and impacts that affect whether these technologies and facilities would in fact be developed. Chapters 4 and 5 show how institutional analysis can support use of exercises such as RIIA in planning institutional change and making energy policy choices.

Morris, F.A.; Cole, R.J.

1980-07-01T23:59:59.000Z

443

Joint spacing criterion for equivalent continuum model  

Science Conference Proceedings (OSTI)

Currently, the Yucca Mountain Site Characterization Project is investigating the feasibility of the disposal of high-level radioactive waste in the unsaturated Topopah Spring formation. The Topopah Spring formation is a heavily fractured, predominantly vertically jointed, welded tuff, and the potential disposal area is cut by the Ghost Dance fault and bounded by several other faults structures. The joints in the tuff and the faults may have an impact on the emplacement drift or borehole stability, as well as on the movement of fluids through the rock mass. The design of the repository drifts and layout, the waste emplacement scheme, and the thermomechanical performance of the rock mass will be analyzed using various numerical models. These models may be based on different assumptions regarding the representation of the fracture behavior under given applied stresses, and will range from discrete models where individual mechanically active fractures are treated distinctly, to continuum models where the joint behavior is smeared over a representative volume. There is always the question of applicability of a model with respect to a given material domain to be analyzed. For the mechanical analysis of the rock mass response around a repository drift, the applicability of an equivalent continuum model is dependent on the joint spacing in the rock mass. Considering the joint spacings that may be encountered at the potential repository site, a ratio of joint spacing to the planned drift diameter may be adopted as a criterion for evaluating the applicability of the Compliant Joint Model (CJM) in the Yucca Mountain Site Characterization Project. In this paper, this criterion is established by reviewing basic continuum concepts and numerical approximation implications used to build the CJM and by examining rock mass conditions that may be encountered at the potential Yucca Mountain repository site.

Tsai, F.C.

1995-12-31T23:59:59.000Z

444

Qualification of the Joints for ITER Central Solenoid  

SciTech Connect

The ITER Central Solenoid has 36 interpancake joints, 12 bus joints, and 12 feeder joints in the magnet. The joints are required to have resistance below 4 nOhm at 45 kA at 4.5 K. The US ITER Project Office developed two different types of interpancake joints with some variations in details in order to find a better design, qualify the joints, and establish a fabrication process. We built and tested four samples of the sintered joints and two samples with butt-bonded joints (a total of eight joints). Both designs met the specifications. Results of the joint development, test results, and selection of the baseline design are presented and discussed in the paper.

Martovetsky, Nicolai N [ORNL; Berryhill, Adam B [Cryomagnetics, Inc.; Kenney, Steven J [ORNL

2012-01-01T23:59:59.000Z

445

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Welcome Welcome In 2006, Argonne laboratory director Robert Rosner formed the AAI as a focal point for accelerator initiatives. The institute works to utilize Argonne's extensive accelerator resources, to enhance existing facilities, to determine the future of accelerator development and construction, and to oversee a dynamic and acclaimed accelerator physics portfolio. I invite you to look around the content of this web site. Accelerators at Argonne describes our rich heritage in this field, particularly with respect to the development and support of user facilities. Initiatives describes the things we are hoping to do, and Research & Development discusses our research portfolio. If you are a graduate or undergraduate student wishing to pursue a career in accelerator science or technology, please see Educational

446

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

ZGS -- Zero Gradient Synchrotron (operation: 1963 - 1979) ZGS -- Zero Gradient Synchrotron (operation: 1963 - 1979) The ZGS was a 12 GeV weak-focusing proton synchrotron. It was the first high energy physics accelerator located between the U.S. coasts. The ZGS was also the first synchrotron to accelerate spin polarized protons and the first to use H-minus injection. Other noteworthy features of the ZGS program were the large number of university-based users and the pioneering development of large superconducting magnets for bubble chambers and beam transport. References - Document Access Guide History of the ZGS, Argonne, 1979, American Institute of Physics, AIP Conference Proceedings No. 60 (1980). (Located in the Argonne Research Library) High Energy Physics at Argonne National Laboratory, A. Crewe, R.

447

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

The Argonne Accelerator History Document Collection The Argonne Accelerator History Document Collection The Argonne Accelerator Institute (AAI) has established a special collection of archived documents which describe notable Argonne accelerator work of the past 50 years. A list of such Argonne Accelerator Projects is given below. Each project is described briefly, with links to archived documents in this collection. This collection includes important Argonne accelerator documents which may have become difficult to locate, as well as ones which have broad scope. In keeping with its historical purpose, this collection only covers work done 10 or more years ago. Many of the listed documents are available online. We hope to make more of them available online in the future. [For several of the projects, interesting additional online documents can be found by

448

Low Dose Radiation Research Program: Induction of Genomic Instability in  

NLE Websites -- All DOE Office Websites (Extended Search)

Induction of Genomic Instability in vivo by Low Doses of 137Cs y Induction of Genomic Instability in vivo by Low Doses of 137Cs y rays, Authors: K. Rithidech1, E.B. Whorton2, M. Tungjai1, E. Ar-Bab1, S.R. Simon1, M. Tawde3 and C.W. Anderson3. Institutions: 1Pathology Department, Stony Brook University, NY 11794-8691, USA, 2University of Texas Medical Branch at Galveston, TX 77550-1047,3Biology Department, Brookhaven National Laboratory, Upton, NY 11973-5000. Information on potential health hazards of radiation at doses below or equal to the level traditionally requiring human radiation protection (less than or equal to 10 cGy) is currently lacking. It is therefore important to characterize early and subsequent in vivo biological response induced by low doses of ionizing radiation because such data should provide information that can help determine whether radiation at this dose level

449

DOE Solar Decathlon: New York Institute of Technology: Instituting  

NLE Websites -- All DOE Office Websites (Extended Search)

New York Institute of Technology's solar house in its permanent location at the U.S. Merchant Marine Academy. New York Institute of Technology's solar house in its permanent location at the U.S. Merchant Marine Academy. Enlarge image Green Machine/Blue Space relies on a hydrogen fuel cell to convert and store energy collected by the house's photovoltaic system. (Courtesy of Kevin Rodgers/U.S. Merchant Marine Academy) Who: New York Institute of Technology What: Green Machine/ Blue Space Where: U.S. Merchant Marine Academy 300 Steamboat Road Kings Point, NY 11024 Map This House Public tours: Not available Solar Decathlon 2005 New York Institute of Technology: Instituting Technology New York Institute of Technology partnered with the U.S. Merchant Marine Academy to develop a solar-powered house for the U.S. Department of Energy Solar Decathlon 2005. The house, called Green Machine/Blue Space, was

450

Institution Name Institution Name Address Place Zip Notes Website Region  

Open Energy Info (EERE)

Institution Name Institution Name Address Place Zip Notes Website Region Institution Name Institution Name Address Place Zip Notes Website Region ARCH Venture Partners Texas ARCH Venture Partners Texas Bridgepoint Parkway Bldg Suite Austin Texas http www archventure com Texas Area ARCH Venture Partners Washington ARCH Venture Partners Washington Second Avenue Suite Seattle Washington http www archventure com Pacific Northwest Area African Wind Energy Association South Africa African Wind Energy Association South Africa South Africa http www afriwea org en south africa htm Alternative Energy Institute Alternative Energy Institute russell long blvd Canyon Texas http www windenergy org Texas Area Applied Process Engineering Laboratory Applied Process Engineering Laboratory Hills Street Suite Richland Washington http www apel org

451

Stockholm Environment Institute (SEI) | Open Energy Information  

Open Energy Info (EERE)

Stockholm Environment Institute (SEI) Jump to: navigation, search Logo: Stockholm Environment Institute Name Stockholm Environment Institute Address Kraftriket 2B, SE-106 91 Place...

452

Honda Research Institute | Open Energy Information  

Open Energy Info (EERE)

Name Honda Research Institute Place Mountain View, California Sector Biofuels, Solar Product California-based research institute of Honda. The institute conducts research into...

453

Form:Research Institution | Open Energy Information  

Open Energy Info (EERE)

Research Institution Jump to: navigation, search Add a Research or Development Institution Input your research or development institution name below to add to the registry. If your...

454

Handbook on dynamics of jointed structures.  

Science Conference Proceedings (OSTI)

The problem of understanding and modeling the complicated physics underlying the action and response of the interfaces in typical structures under dynamic loading conditions has occupied researchers for many decades. This handbook presents an integrated approach to the goal of dynamic modeling of typical jointed structures, beginning with a mathematical assessment of experimental or simulation data, development of constitutive models to account for load histories to deformation, establishment of kinematic models coupling to the continuum models, and application of finite element analysis leading to dynamic structural simulation. In addition, formulations are discussed to mitigate the very short simulation time steps that appear to be required in numerical simulation for problems such as this. This handbook satisfies the commitment to DOE that Sandia will develop the technical content and write a Joints Handbook. The content will include: (1) Methods for characterizing the nonlinear stiffness and energy dissipation for typical joints used in mechanical systems and components. (2) The methodology will include practical guidance on experiments, and reduced order models that can be used to characterize joint behavior. (3) Examples for typical bolted and screw joints will be provided.

Ames, Nicoli M.; Lauffer, James P.; Jew, Michael D.; Segalman, Daniel Joseph; Gregory, Danny Lynn; Starr, Michael James; Resor, Brian Ray

2009-07-01T23:59:59.000Z

455

Partnering Institution Name Partnering Institution Name Place Type  

Open Energy Info (EERE)

Partnering Institution Name Partnering Institution Name Place Type Partnering Institution Name Partnering Institution Name Place Type of Partnership Partner Center Partner Year Partner Description Link Technologies Technologies North Lexington Massachusetts Incubator National Center for Photovoltaics M M St Paul Minnesota CRADA http www nrel gov pv pv manufacturing html A O Smith A O Smith Milwaukee Wisconsin Test Evaluation Partner Electricity Resources Building Systems Integration A123Systems A123Systems Watertown Massachusetts CRADA Transportation Technologies and Systems http www nrel gov news press html AAON AAON Tulsa Oklahoma Test Evaluation Partner Electricity Resources Building Systems Integration AQUA Products AQUA Products Prosperity South Carolina Test Evaluation Partner Electricity Resources Building Systems Integration

456

Qualification of the Joints for the ITER Central Solenoid  

SciTech Connect

The ITER Central Solenoid has 36 interpancake joints, 12 bus joints, and 12 feeder joints in the magnet. The joints are required to have resistance below 4 nOhm at 45 kA at 4.5 K. The US ITER Project Office developed two different types of interpancake joints with some variations in details in order to find a better design, qualify the joints, and establish a fabrication process. We built and tested four samples of the sintered joints and two samples with butt-bonded joints (a total of eight joints). Both designs met the specifications. Results of the joint development, test results, and selection of the baseline design are presented and discussed in the paper. The ITER Central Solenoid (CS) consists of six modules. Each module is composed of six wound hexapancakes and one quadrapancake. The multipancakes are connected electrically and hydraulically by in-line interpancake joints. The joints are located at the outside diameter (OD) of the module. Cable in conduit conductor (CICC) high-current joints are critical elements in the CICC magnets. In addition to low resistivity, the CS joints must fit a space envelope equivalent to the regular conductor cross section and must have low hydraulic impedance and enough structural strength to withstand the hoop and compressive forces during operation, including cycling. This paper is the continuation of the work reported on the intermodule joints.

Martovetsky, N; Berryhill, A; Kenney, S

2011-09-01T23:59:59.000Z

457

Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches  

E-Print Network (OSTI)

SK, Bonanno JB. Structural genomics. Methods Biochem AnalMizuguchi K. Structural genomics: an overview. Prog BiophysSE. A tour of structural genomics. Nat Rev Genet 2001;2(10):

Chandonia, John-Marc; Brenner, Steven E.

2004-01-01T23:59:59.000Z

458

Lawrence Livermore and Rensselaer Polytechnic Institute scientists set a  

NLE Websites -- All DOE Office Websites (Extended Search)

6 6 For immediate release: 04/30/2013 | NR-13-04-06 Lawrence Livermore and Rensselaer Polytechnic Institute scientists set a new simulation speed record on the Sequoia supercomputer Donald B Johnston, LLNL, (925) 423-4902, johnston19@llnl.gov Printer-friendly Lawrence Livermore scientists, from left, David Jefferson and Peter Barnes. Photo by Laura Schulz and Meg Epperly/LLNL High Resolution Image Computer scientists at Lawrence Livermore National Laboratory (LLNL) and Rensselaer Polytechnic Institute have set a high performance computing speed record that opens the way to the scientific exploration of complex planetary-scale systems. In a paper to be published in May, the joint team will announce a record-breaking simulation speed of 504 billion events per second on LLNL's

459

Order and disorder in columnar joints  

E-Print Network (OSTI)

Columnar joints are three-dimensional fracture networks that form in cooling basalt and several other media. The network organizes itself into ordered, mostly hexagonal columns. The same pattern can be observed on a smaller scale in desiccating starch. We show how surface boundary conditions in the desiccation of starch affect the formation of columnar joints. Under constant drying power conditions, we find a power law dependence of columnar cross-sectional area with depth, while under constant drying rate conditions this coarsening is eventually halted. Discontinuous transitions in pattern scale can be observed under constant external conditions, which may prompt a reinterpretation of similar transitions found in basalt. Starch patterns are statistically similar to those found in basalt, suggesting that mature columnar jointing patterns contain inherent residual disorder, but are statistically scale invariant.

Lucas Goehring; Stephen W. Morris

2005-01-03T23:59:59.000Z

460

CALIFORNIA INSTITUTE OF TECHNOLOGY APPLICATION CHECKLIST  

E-Print Network (OSTI)

CALIFORNIA INSTITUTE OF TECHNOLOGY APPLICATION CHECKLIST Applicants are encouraged to submit Testing Service to the California Institute of Technology (Institutional Code 4034) Requested Code 23087 California Institute of Technology Pasadena, CA 91125 Note: DO NOT send your

Greer, Julia R.

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


461

Human Genome Education Program  

Science Conference Proceedings (OSTI)

The funds from the DOE Human Genome Program, for the project period 2/1/96 through 1/31/98, have provided major support for the curriculum development and field testing efforts for two high school level instructional units: Unit 1, ''Exploring Genetic Conditions: Genes, Culture and Choices''; and Unit 2, ''DNA Snapshots: Peaking at Your DNA''. In the original proposal, they requested DOE support for the partial salary and benefits of a Field Test Coordinator position to: (1) complete the field testing and revision of two high school curriculum units, and (2) initiate the education of teachers using these units. During the project period of this two-year DOE grant, a part-time Field-Test Coordinator was hired (Ms. Geraldine Horsma) and significant progress has been made in both of the original proposal objectives. Field testing for Unit 1 has occurred in over 12 schools (local and non-local sites with diverse student populations). Field testing for Unit 2 has occurred in over 15 schools (local and non-local sites) and will continue in 12-15 schools during the 96-97 school year. For both curricula, field-test sites and site teachers were selected for their interest in genetics education and in hands-on science education. Many of the site teachers had no previous experience with HGEP or the unit under development. Both of these first-year biology curriculum units, which contain genetics, biotechnology, societal, ethical and cultural issues related to HGP, are being implemented in many local and non-local schools (SF Bay Area, Southern California, Nebraska, Hawaii, and Texas) and in programs for teachers. These units will reach over 10,000 students in the SF Bay Area and continues to receive support from local corporate and private philanthropic organizations. Although HGEP unit development is nearing completion for both units, data is still being gathered and analyzed on unit effectiveness and student learning. The final field testing result from this analysis will contribute to the final revisions of each unit during the second-year of this grant.

Richard Myers; Lane Conn

2000-05-01T23:59:59.000Z

462

Joint Press Release TWELFTH ITER NEGOTIATION MEETING  

E-Print Network (OSTI)

@mail.most.gov.cn India Institute for Plasma Research Bhat, Gandhinagar 382428 Prof. P.K. Kaw Kaw@ipr.res.in Japan 12

463

Institute for Plasma Research - TMS  

Science Conference Proceedings (OSTI)

VISIT THE JOM COVER GALLERY. BACK TO RESULTS. SEARCH AGAIN. Institute for Plasma Research. Division - FCIPT, B-15-17/P, GIDC, • Electronics zone, ...

464

WIPP - Passive Institutional Controls (PICs)  

NLE Websites -- All DOE Office Websites (Extended Search)

Energy has developed a program for the development of Passive Institutional Controls to alert future generations to the potential hazards of intersecting the Waste Isolation Pilot...

465

Institutional Plan FY 2003 - 2007  

E-Print Network (OSTI)

III. LABORATORY STRATEGIC PLAN DOE Program Focus on ResultsInstitutional Plan addresses the strategic goals of DOE andbelow does not support those elements of the strategic plan

Chartock, Michael; Hansen, Todd

2002-01-01T23:59:59.000Z

466

Genomics.energy.gov--genome programs of the U.S. Department of...  

NLE Websites -- All DOE Office Websites (Extended Search)

in environmental-waste cleanup, energy production, carbon cycling, and biotechnology. Genomics Image Gallery Visit this site for free downloadable, high-resolution, genomics...

467

NATIONAL INSTITUTES OF HEALTH National Institutes of Health  

E-Print Network (OSTI)

OF HEALTH AND HUMAN SERVICES FY 2002 #12;TABLE OF CONTENTS VOLUME 1 Foreword of an Interdisciplinary Approach.................................17 Section III: Department of Health and Human ServicesNATIONAL INSTITUTES OF HEALTH National Institutes of Health Strategic Research Plan and Budget

Bandettini, Peter A.

468

Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity  

E-Print Network (OSTI)

management of the genome sequencing. References Altschul,species revealed the core genome, sequencing of 12 isolatesrevealed by ongoing genome sequencing projects. Although

Walker, C.B.

2010-01-01T23:59:59.000Z

469

Genome Project Standards in a New Era of Sequencing  

E-Print Network (OSTI)

for clone- based human genome sequencing, this finishing20850, USA  Human Genome Sequencing Center, Baylor College USA  HudsonAlpha Genome Sequencing Center, HudsonAlpha 

Hostetler, J.

2010-01-01T23:59:59.000Z

470

Complete genome sequence of Desulfomicrobium baculatum type strain (XT)  

E-Print Network (OSTI)

is deposited in Genome sequencing and annotation Genomeof Life, GEBA Table 2. Genome sequencing project informationand DNA isolation Genome sequencing and assembly tions to

Copeland, Alex

2010-01-01T23:59:59.000Z

471

Genomic Sequencing of Single Microbial Cells from Environmental Samples  

E-Print Network (OSTI)

as function of the genome sequencing effort. AdditionalYJ, Chen Z, et al. : Genome sequencing in microfabricatedof whole genome amplification and sequencing. Mechanical

Ishoey, Thomas

2010-01-01T23:59:59.000Z

472

Genomic analysis of high pressure adaptation in deep sea bacteria  

E-Print Network (OSTI)

This makes the genome sequencing project of Carnobacteriumpiezophile to undergo genome sequencing. Investigation intoMarine Microbial Genome Sequencing project. The initial

Stratton, Taylor Kristen

2008-01-01T23:59:59.000Z

473

Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)  

E-Print Network (OSTI)

with type strain genome sequencing projects registered inResearch, Braunschweig) Genome sequencing and annotationthe complete Table 2. Genome sequencing project information

Clum, Alicia

2010-01-01T23:59:59.000Z

474

Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum  

E-Print Network (OSTI)

Page Incorporating Genomics and Bioinformatics across the2007) Discovering Genomics, Proteomics, and Bioinformatics,2003) Public access for teaching genomics, proteomics, and

Ditty, Jayna L.

2012-01-01T23:59:59.000Z

475

Genomes containing Duplicates are Hard to compare ... - CECM  

E-Print Network (OSTI)

and other genomic markers are common in genomes, due to several evolutionary . mechanisms, like gene duplication or whole genomes duplications [San01].

476

Dissection of Plant Defense Mechanisms Using Chemical and Molecular Genomics  

E-Print Network (OSTI)

of auxins by a chemical genomics approach." Journal ofadvances in chemical genomics." Current Medicinal Chemistrymolecular and chemical genomics." Phytopathology 97(7): S58-

Rodriguez-Salus, Melinda Sue

2012-01-01T23:59:59.000Z

477

Validation in Genomics: CpG Island Methylation Revisited  

E-Print Network (OSTI)

analysis. In: Functional Genomics: Methods and Protocols, M.Segal: Validation in Genomics: CpG Island Methylationpackage and applications to genomics. Bioinformatics and

Segal, Mark R

2006-01-01T23:59:59.000Z

478

Comparative genomics and evolution of eukaryotic phospholipid biosynthesis  

E-Print Network (OSTI)

S. Banfi and B. Franco, Genomics 55 (1999) 68-77. F. Simmer,Comparative genomics and evolution of eukaryoticwork utilizes comparative genomics and phylogenetics for

Lykidis, Athanasios

2006-01-01T23:59:59.000Z

479

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper  

E-Print Network (OSTI)

Potnis et al. : Comparative genomics reveals diversity amongtomato and pepper. BMC Genomics Submit your next manuscriptpv. syringae Potnis et al. BMC Genomics 2011, 12:146 http://

2011-01-01T23:59:59.000Z

480

Genomics of emerging infectious disease: A PLoS collection.  

E-Print Network (OSTI)

Origins and evolutionary genomics of the 2009 swine-originan Infectious Diseases Genomics Project predict and preventRavel J (2009) The role of genomics in the identification,

Eisen, Jonathan A; MacCallum, Catriona J

2009-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "joint genome institute" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


481

TOPSAN: a collaborative annotation environment for structural genomics.  

E-Print Network (OSTI)

environment for structural genomics Dana Weekes 1† , S Srihigh-throughput structural genomics centers, despite theirbeing determined by structural genomics centers and high-

Weekes, Dana; Krishna, S; Bakolitsa, Constantina; Wilson, Ian A; Godzik, Adam; Wooley, John

2010-01-01T23:59:59.000Z

482

Application of Statistical Methods to Integrative Analysis of Genomic Data  

E-Print Network (OSTI)

in functional genomics . . . . . . . . . . . . . . . . . 1.3throughput technologies in genomics and proteomics promotesElizabeth A. Winzeler. “Genomics, gene expression and DNA

Kim, Kyung Pil

2013-01-01T23:59:59.000Z

483

CONTEXTUAL ROADMAP: Policy Institute Visibility, Presence, Impact  

E-Print Network (OSTI)

. STIP: Program in Science, Technology, and Innovation Policy (joint effort of EI2 and School of Public

Li, Mo

484

Joint Urban 2003: Study Overview And Instrument Locations  

SciTech Connect

Quality-assured meteorological and tracer data sets are vital for establishing confidence that indoor and outdoor dispersion models used to simulate dispersal of potential toxic agents in urban atmospheres are giving trustworthy results. The U.S. Department of Defense-Defense Threat Reduction Agency and the U.S. Department of Homeland Security joined together to conduct the Joint Urban 2003 atmospheric dispersion study to provide this critically-needed high-resolution dispersion data. This major urban study was conducted from June 28 through July 31, 2003, in Oklahoma City, Oklahoma, with the participation of over 150 scientists and engineers from over 20 U.S. and foreign institutions. The Joint Urban 2003 lead scientist was Jerry Allwine (Pacific Northwest National Laboratory) who oversaw study design, logistical arrangements and field operations with the help of Joe Shinn (Lawrence Livermore National Laboratory), Marty Leach (Lawrence Livermore National Laboratory), Ray Hosker (Atmospheric Turbulence and Diffusion Division), Leo Stockham (Northrop Grumman Information Technology) and Jim Bowers (Dugway Proving Grounds). This report gives a brief overview of the field campaign, describing the scientific objectives, the dates of the intensive observation periods, and the instruments deployed. The data from this field study is available to the scientific community through an on-line database that is managed by Dugway Proving Ground. This report will be included in the database to provide its users with some general information about the field study, and specific information about the instrument coordinates. Appendix A of this document provides the definitive record of the instrument locations during this field campaign, and Appendix B lists all the study principal investigators and participants.

Allwine, K Jerry; Flaherty, Julia E.

2006-08-16T23:59:59.000Z

485

D.: Genome halving with an outgroup  

E-Print Network (OSTI)

Abstract: Some genomes are known to have incurred a genome doubling (tetraploidization) event in their evo lutionary history, and this is reflected today in patterns of duplicated segments scattered throughout their chromosomes. These duplications may be used as data to “halve ” the genome, i.e. to reconstruct the an cestral genome at the moment of tetraploidization, but the solution is often highly non- unique. To resolve this problem, we adapt the genome halving algorithm of El-Mabrouk and Sankoff to take account of an external reference genome. We apply this to reconstruct the tetraploid ancestor of maize, using either rice or sorghum as the reference.

Chunfang Zheng; Qian Zhu; David Sankoff

2006-01-01T23:59:59.000Z

486

JGI - Ray Turner  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute Education Bachelor of Science Finance, University of Utah Masters of Science Financial Management, Naval Postgraduate School Awards and Service...

487

Berkeley Lab National User Facilities  

NLE Websites -- All DOE Office Websites (Extended Search)

(Energy Sciences Network) Joint Genome Institute The Molecular Foundry National Center for Electron Microscopy (NCEM) National Energy Research Scientific Computing Center (NERSC)...

488

Additional national laboratories  

NLE Websites -- All DOE Office Websites (Extended Search)

(Idaho Falls, ID) JGI Joint Genome Institute (Walnut Creek, CA) KCP - ALBQ Kansas City Plant (Albuquerque, NM) KCP Kansas City Plant (Kansas City, MO) LIGO Hanford...

489

JGI - Susannah Tringe  

NLE Websites -- All DOE Office Websites (Extended Search)

Tringe Susannah Tringe Susannah Green Tringe, Ph.D Metagenome Program Lead, DOE Joint Genome Institute Education AB, Physics, Harvard University, Cambridge, MA (summa cum...

490

Brand Guidelines Introduction  

NLE Websites -- All DOE Office Websites (Extended Search)

Introduction The new Joint Genome Institute logo takes an evolutionary step into the future, while staying true to the strength of its past. It possesses smooth, flowing lines...

491

JGI - Directions  

NLE Websites -- All DOE Office Websites (Extended Search)

Directions Address DOE Joint Genome Institute 2800 Mitchell Drive Walnut Creek, CA 94598 From Oakland Airport Follow Airport exit signs onto AIRPORT DR. Turn RIGHT onto HEGENBERGER...

492

2013 NUFO Annual Meeting  

NLE Websites -- All DOE Office Websites (Extended Search)

by the six user facilities at LBNL: the Advanced Light Source, The Molecular Foundry, the Joint Genome Institute, the National Center for Electron Microscopy, ESNet and NERSC....

493

JGI Progress Report  

NLE Websites -- All DOE Office Websites (Extended Search)

Progress Report report cover The 2012 DOE Joint Genome Institute Progress Report, highlighting the achievements of the previous year, has been released and can be downloaded here....

494

JGI - Ergonomics  

NLE Websites -- All DOE Office Websites (Extended Search)

Ergonomics at DOE JGI U.S. Department of Energy (DOE) Joint Genome Institute (JGI) Ergonomics Program aims to address ergonomics risks in the laboratories. Laboratory Ergonomics...

495

OSCARS Case Study  

NLE Websites -- All DOE Office Websites (Extended Search)

Feedback: info@es.net OSCARS Case Study OSCARS Virtual Circuits Extend JGI Network Capacity The Challenge In February 2010, the Joint Genome Institute (JGI) at Lawrence Berkeley...

496

NERSC Nick Balthaser NERSC Storage Systems Group  

NLE Websites -- All DOE Office Websites (Extended Search)

Introduction to HPSS at NERSC Nick Balthaser NERSC Storage Systems Group nabalthaser@lbl.gov Joint Genome Institute, Walnut Creek, CA Feb 10, 2011 * NERSC Archive Technologies...

497

JGI - Sequencing  

NLE Websites -- All DOE Office Websites (Extended Search)

Sequencing Product Offerings Statistics Sequencing Plans Educational Resources MyJGI: Information for Collaborators The Department of Energy's Joint Genome Institute (DOE JGI)...

498

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata  

E-Print Network (OSTI)

constantly monitoring genome sequencing projects worldwideas part of the Whole Genome Sequencing (WGS) project.large scale microbial genome sequencing programs have been

Liolios, Konstantinos

2008-01-01T23:59:59.000Z

499

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata  

E-Print Network (OSTI)

large-scale microbial genome sequencing initiatives, e.g. ,in the history of genome sequencing projects: the completedfor publication of genome sequencing projects require the

Liolios, Konstantinos

2010-01-01T23:59:59.000Z

500

Archipelagos Institute of Marine Conservation  

E-Print Network (OSTI)

Page 1 Archipelagos Institute of Marine Conservation www.archipelago.gr VOLUNTEER RESEARCHER GUIDE of Marine Conservation. As an Archipelagos volunteer researcher, you are expected to abide by these policies. Introduction Archipelagos, Institute of Marine Conservation is a Greek, non-profit, non- governmental