National Library of Energy BETA

Sample records for geology faults folds

  1. Mechanical Models of Fault-Related Folding

    SciTech Connect (OSTI)

    Johnson, A. M.

    2003-01-09

    The subject of the proposed research is fault-related folding and ground deformation. The results are relevant to oil-producing structures throughout the world, to understanding of damage that has been observed along and near earthquake ruptures, and to earthquake-producing structures in California and other tectonically-active areas. The objectives of the proposed research were to provide both a unified, mechanical infrastructure for studies of fault-related foldings and to present the results in computer programs that have graphical users interfaces (GUIs) so that structural geologists and geophysicists can model a wide variety of fault-related folds (FaRFs).

  2. Boullier The fault zone geology 1 Fault zone geology: lessons from drilling through the Nojima and 1

    E-Print Network [OSTI]

    Boyer, Edmond

    Boullier The fault zone geology 1 Fault zone geology: lessons from active faults with the aim of 11 learning about the geology of the fault all 18 their objectives, have still contributed to a better geological

  3. Can flat-ramp-flat fault geometry be inferred from fold shape?: A comparison of kinematic and mechanical folds

    E-Print Network [OSTI]

    Savage, Heather M.

    in the suprajacent fold shapes. Differences between the kinematic and mechanical fault-fold relationships highlight rights reserved. Keywords: Fault-bend folding; Mechanical models; Kinematic models; Fault geometry and mechanical models have been used to analyze fault-cored folds. Kinematic models, which balance the geometry

  4. Folds above angular fault bends: mechanical constraints for backlimb trishear kinematic models 

    E-Print Network [OSTI]

    Zhang, Li

    2004-11-15

    for the degree of MASTER OF SCIENCE Approved as to style and content by: Judith S. Chester (Chair of Committee) Frederick M. Chester (Member) Charles P. Aubeny (Member) Andrew Hajash Jr. (Head of Department) August 2003 Major Subject: Geology iii ABSTRACT Folds... above Angular Fault Bends: Mechanical Constraints for Backlimb Trishear Kinematic Models. (August 2003) Li Zhang, B.E.; M.S., Southwest Petroleum Institute, P.R.China Chair of Advisory Committee: Dr. Judith S. Chester The backlimb trishear velocity eld...

  5. Interplay between faulting and base level in the development of Himalayan frontal fold topography

    E-Print Network [OSTI]

    Interplay between faulting and base level in the development of Himalayan frontal fold topography] Fold topography preserves a potentially accessible record of the structure and evolution of an underlying thrust fault system, provided we understand the factors that shape that topography. Here we

  6. GEOLOGIC NOTE Fault linkage and graben

    E-Print Network [OSTI]

    Fossen, Haakon

    . Schultz $ Geomechanics-Rock Fracture Group, Department of Geological Sciences and Engineering/172 (1982), and his Ph.D. in geomechanics from Purdue University (1987). He worked at the Lunar

  7. Brittle Fault Chronology of New York City (NYC) Charles Merguerian, Geology Department, Hofstra University, Hempstead, NY 11549

    E-Print Network [OSTI]

    Merguerian, Charles

    Brittle Fault Chronology of New York City (NYC) Charles Merguerian, Geology Department, Hofstra This Abstract: Merguerian, Charles, 2004a, Brittle fault chronology of New York City (NYC): Geological Society

  8. The effects of lithology and initial fault angle in physical models of fault-propagation folds 

    E-Print Network [OSTI]

    McLain, Christopher Thomas

    2001-01-01

    with a weak brittle layer that deforms by faulting and fracturing (dried pottery clay simulates an interbedded siliciclastic unit). The models were deformed in a triaxial deformation rig at confining pressure of 50 Mpa at room temperature. Each model...

  9. STRATIGRAPHY, STRUCTURAL GEOLOGY, AND DUCTILE-AND BRITTLE FAULTS OF NEW YORK CITY

    E-Print Network [OSTI]

    Merguerian, Charles

    STRATIGRAPHY, STRUCTURAL GEOLOGY, AND DUCTILE- AND BRITTLE FAULTS OF NEW YORK CITY Charles in the 1800's and 1900's, the bedrock geology of the New York City area was mapped in systematic detail author of the United States Geological Survey New York City Folio (#83) published in 1902, outlined

  10. submitted to Geophys. J. Int. Imaging quasi vertical geologic faults with earthquake data

    E-Print Network [OSTI]

    Roytburd, Victor

    . Faults are boundaries between geologic structures, such as tectonic plates, and are located in earthquake is of considerable interest. The applications include imaging of salt flanks in hydrocarbon exploration and imaging

  11. U.S.Geological Survey Grant No. 01HQGR0018 EARTHQUAKE POTENTIAL OF MAJOR FAULTS OFFSHORE SOUTHERN CALIFORNIA

    E-Print Network [OSTI]

    Goldfinger, Chris

    U.S.Geological Survey Grant No. 01HQGR0018 EARTHQUAKE POTENTIAL OF MAJOR FAULTS OFFSHORE SOUTHERN;U.S.Geological Survey Grant No. 01HQGR0018 EARTHQUAKE POTENTIAL OF MAJOR FAULTS OFFSHORE SOUTHERN Major active faults offshore southern California are poorly known with respect to slip-rates and seismic

  12. Merguerian, Charles, 1994a, Stratigraphy, structural geology, and ductile-and brittle faults of the New York City area, p. 49-56 in Hanson, G. N., chm., Geology of Long Island

    E-Print Network [OSTI]

    Merguerian, Charles

    Merguerian, Charles, 1994a, Stratigraphy, structural geology, and ductile- and brittle faults with Abstracts, 165 p. STRATIGRAPHY, STRUCTURAL GEOLOGY, AND DUCTILE- AND BRITTLE FAULTS OF THE NEW YORK CITY of the stratigraphy and structure of the region and has delineated a number of ductile- and brittle faults. The belt

  13. Kinematics of fault-related folding derived from a sandbox experiment Sylvain Bernard,1,2

    E-Print Network [OSTI]

    Avouac, Jean-Philippe

    be used to determine incremental defor- mation associated with active folds [e.g., Rockwell et al., 1988

  14. Relationship of compaction bands in Utah to Laramide fault-related folding Richard A. Schultz

    E-Print Network [OSTI]

    Geomechanics--Rock Fracture Group, Department of Geological Sciences and Engineering/172, University of Nevada localization in rock that can impede subsurface uid ow and thus are also important to groundwater and petroleum

  15. Geologic Map and GIS Data for the Tuscarora Geothermal Area

    SciTech Connect (OSTI)

    Faulds, James E.

    2013-12-31

    Tuscarora—ESRI Geodatabase (ArcGeology v1.3): - Contains all the geologic map data, including faults, contacts, folds, unit polygons, and attitudes of strata and faults. - List of stratigraphic units and stratigraphic correlation diagram. - Detailed unit descriptions of stratigraphic units. - Five cross?sections. - Locations of production, injection, and monitor wells. - 3D model constructed with EarthVision using geologic map data, cross?sections, drill?hole data, and geophysics (model not in the ESRI geodatabase).

  16. Conditions during syntectonic vein formation in the footwall of the Absaroka thrust fault of the Idaho-Wyoming-Utah fold and thrust belt 

    E-Print Network [OSTI]

    Lambert, George Randall

    1993-01-01

    Results. . Isotope Thermometry . FRACTURE MECHANICS . Analysis Procedure and Results DISCUSSION . Thrust Faulting and Overburden Temperatures. Geothermal Gradient Constraints. Twtn Creek Formation Fluid Flow? Closed system. Open System. . tv vt...C. The lithostatic and hydrostatic thermobartc gradients were calculated using a 26 MPa/km hthostatic gradient, a 10 MPa/km hydrostatic gradient and a 25oC/km geothermal gradient. The present mean surface temperature in this portion of the Idaho-Wyoming-Utah fold...

  17. Geologic Map and GIS Data for the Wabuska Geothermal Area

    SciTech Connect (OSTI)

    Hinz, Nick

    2013-09-30

    Wabuska—ESRI geodatabase (ArcGeology v1.3): - Contains all the geologic map data, including faults, contacts, folds, veins, dikes, unit polygons, and attitudes of strata. - List of stratigraphic units and stratigraphic correlation diagram. - One cross?section.

  18. Geological Engineering Geological Engineering

    E-Print Network [OSTI]

    Wehlau, David

    1 Geological Engineering l 1 Geological Engineering www.geol.ca Queen's Geological Engineering Vicki Remenda, PEng ­ GEOENG Head Department of Geological Sciences and Geological Engineering Miller Hall Welcome to... Orientation CLASS OF 2018 What is Geological Engineering ? Geological Engineering

  19. Geologic Maps Geology 200

    E-Print Network [OSTI]

    Kammer, Thomas

    Geologic Maps Geology 200 Geology for Environmental Scientists #12;Geologic Map of the US #12;Symbols found on geologic maps #12;Horizontal Strata #12;Geologic map of part of the Grand Canyon. Each color represents a different formation. #12;Inclined Strata #12;Dome #12;Geologic map of the Black Hills

  20. Folding Photons

    SciTech Connect (OSTI)

    Gregg, B. A.; van de Lagemaat, J.

    2012-05-01

    Scientists have shown that wrinkles and folds can be used to maximize the absorption of low-energy photons by efficiently redirecting them into a thin absorbing film. This inexpensive technique for structuring photonic substrates could be used to increase the efficiency of many organic photovoltaic cells.

  1. Project EARTH-13-SHELLJC1: Polygonal faults and de-watering of mudrocks during early burial

    E-Print Network [OSTI]

    Henderson, Gideon

    Geology. 28, 1593-1610. Goulty, N.J. 2008. Geomechanics of polygonal fault systems: a review. Petroleum

  2. Fault finder

    DOE Patents [OSTI]

    Bunch, Richard H. (1614 NW. 106th St., Vancouver, WA 98665)

    1986-01-01

    A fault finder for locating faults along a high voltage electrical transmission line. Real time monitoring of background noise and improved filtering of input signals is used to identify the occurrence of a fault. A fault is detected at both a master and remote unit spaced along the line. A master clock synchronizes operation of a similar clock at the remote unit. Both units include modulator and demodulator circuits for transmission of clock signals and data. All data is received at the master unit for processing to determine an accurate fault distance calculation.

  3. Late Cenozoic partitioning of oblique plate convergence in the Zagros fold-and-thrust belt (Iran)

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Late Cenozoic partitioning of oblique plate convergence in the Zagros fold-and-thrust belt (Iran 2 May 2006. [1] The NW trending Zagros fold-and-thrust belt is affected by two major dextral faults operating at the rear of the belt has become partitioned along the newly formed Main Recent Fault

  4. Aerial photographic interpretation of lineaments and faults in late cenozoic deposits in the Eastern part of the Benton Range 1:100,000 quadrangle and the Goldfield, Last Chance Range, Beatty, and Death Valley Junction 1:100,000 quadrangles, Nevada and California

    SciTech Connect (OSTI)

    Reheis, M.C.; Noller, J.S.

    1991-09-01

    Lineaments and faults in Quaternary and late Tertiary deposits in the southern part of the Walker Lane are potentially active and form patterns that are anomalous with respect to the typical fault patterns in most of the Great Basin. Little work has been done to identify and characterize these faults, with the exception of those in the Death Valley-Furnace Creek (DVFCFZ) fault system and those in and near the Nevada Test Site. Four maps at a scale of 1:100,000 summarize the existing knowledge about these lineaments and faults based on extensive aerial-photo interpretation, limited field investigations, and published geologic maps. The lineaments and faults in all four maps can be divided geographically into two groups. The first group includes west- to north-trending lineaments and faults associated with the DVFCFZ and with the Pahrump fault zone in the Death Valley Junction quadrangle. The second group consists of north- to east-northeast-trending lineaments and faults in a broad area that lies east of the DVFCFZ and north of the Pahrump fault zone. Preliminary observations of the orientations and sense of slip of the lineaments and faults suggest that the least principle stress direction is west-east in the area of the first group and northwest-southeast in the area of the second group. The DVFCFZ appears to be part of a regional right-lateral strike-slip system. The DVFCFZ steps right, accompanied by normal faulting in an extensional zone, to the northern part of the Walker Lane a the northern end of Fish Lake Valley (Goldfield quadrangle), and appears to step left, accompanied by faulting and folding in a compressional zone, to the Pahrump fault zone in the area of Ash Meadows (Death Valley Junction quadrangle). 25 refs.

  5. Seismic behaviour of the Dead Sea fault along Araba valley, Y. Klinger,1,

    E-Print Network [OSTI]

    Avouac, Jean-Philippe

    rue Lafayette, F-75480 Paris cedex 10, France 4 Department of Geology, University of Jordan, Amman-lateral strike-slip fault. South of the Dead Sea basin, the Wadi Araba fault extends over 160 km to the Gulf the fault except around the Dead Sea and Gulf of Aqaba, where the fault splays into complex pull-apart basin

  6. Deep drilling phase of the Pen Brand Fault Program

    SciTech Connect (OSTI)

    Stieve, A.

    1991-05-15

    This deep drilling activity is one element of the Pen Branch Fault Program at Savannah River Site (SRS). The effort will consist of three tasks: the extension of wells PBF-7 and PBF-8 into crystalline basement, geologic and drilling oversight during drilling operations, and the lithologic description and analysis of the recovered core. The drilling program addresses the association of the Pen Branch fault with order fault systems such as the fault that formed the Bunbarton basin in the Triassic.

  7. 1 Geological Sciences GEOLOGICAL SCIENCES

    E-Print Network [OSTI]

    Vertes, Akos

    1 Geological Sciences GEOLOGICAL SCIENCES Geological sciences' faculty members are engaged in research on the geology and paleontology of the Appalachian and Rocky mountains, Asia and elsewhere. They collaborate with scientists from the U.S. Geological Survey and other international organizations. Research

  8. Hydrologic and geologic aspects of low-level radioactive-waste site management. [Shallow land burial at Oak Ridge

    SciTech Connect (OSTI)

    Cutshall, N.H.; Vaughan, N.D.; Haase, C.S.; Olsen, C.R.; Huff, D.D.

    1982-01-01

    Hydrologic and geologic site characterization is a critical phase in development of shallow land-burial sites for low-level radioactive-waste disposal, especially in humid environments. Structural features such as folds, faults, and bedding and textural features such as formation permeability, porosity, and mineralogy all affect the water balance and water movement and, in turn, radionuclide migration. Where these features vary over short distance scales, detailed mapping is required in order to enable accurate model predictions of site performance and to provide the basis for proper design and planning of site-disposal operations.

  9. Origami DNA model Mountain fold

    E-Print Network [OSTI]

    Csürös, Miklós

    Origami DNA model Mountain fold Solid lines are "mountains" and are to be folded away from you with the peak pointing towards you. 1. Fold all solid lines going lengthwise down the page into "mountain folds fold 2. Fold all dashed lines going lengthwise down the page into "valley folds". Mountain folds along

  10. Quaternary geologic and geomorphic framework for neotectonic analysis of the northeastern Franklin Mountains, El Paso, Texas 

    E-Print Network [OSTI]

    Scherschel, Craig A.

    1995-01-01

    The Quaternary geology and geomorphology of a 45 km2 area along the northeastern Franklin Mountains near El Paso, Texas was characterized as part of a paleoseismic evaluation of the East Franklin Mountains fault. The East Franklin Mountains fault...

  11. YOUNG GEOLOGY GEOLOGY OF THE

    E-Print Network [OSTI]

    Seamons, Kent E.

    YOUNG GEOLOGY UNIVERSITY May, 1962 GEOLOGY OF THE SOUTHERN WASATCH MOUNTAINS AND VICIN~IM,UTAH C O ....................J. Keith Rigby 80 Economic Geology of North-Central Utah ...,............... Kcnneth C.Bdodc 85 Rod Log ........................Lehi F. Hintze, J. Ka# Ri&, & ClydeT. Hardy 95 Geologic Map of Southern

  12. Protein folding tames chaos

    E-Print Network [OSTI]

    Xia, Kelin

    2013-01-01

    Protein folding produces characteristic and functional three-dimensional structures from unfolded polypeptides or disordered coils. The emergence of extraordinary complexity in the protein folding process poses astonishing challenges to theoretical modeling and computer simulations. The present work introduces molecular nonlinear dynamics (MND), or molecular chaotic dynamics, as a theoretical framework for describing and analyzing protein folding. We unveil the existence of intrinsically low dimensional manifolds (ILDMs) in the chaotic dynamics of folded proteins. Additionally, we reveal that the transition from disordered to ordered conformations in protein folding increases the transverse stability of the ILDM. Stated differently, protein folding reduces the chaoticity of the nonlinear dynamical system, and a folded protein has the best ability to tame chaos. Additionally, we bring to light the connection between the ILDM stability and the thermodynamic stability, which enables us to quantify the disorderli...

  13. Motion and evolution of the Chaochou Fault, Southern Taiwan 

    E-Print Network [OSTI]

    Hassler, Lauren E.

    2005-11-01

    The Chaochou Fault (CCF) is both an important lithologic boundary and a significant topographic feature in the Taiwan orogenic belt. It is the geologic boundary between the Slate Belt to the east, and the Western Foothills to the west. Although...

  14. Curvilinear gullies, lobate deposits and fractures, and their implications for the geologic evolution and hydration of Vesta

    E-Print Network [OSTI]

    Scully, Jennifer Eva

    2015-01-01

    scale rheology of the Zagros fold belt, Iran. Geology, 39(the ridges that make up the Zagros fold belt, as viewed inProvince (Figure 4-13) and Zagros fold belt (Figure 4-14),

  15. Measuring and Modeling Fault Density for Plume-Fault Encounter Probability Estimation

    SciTech Connect (OSTI)

    Jordan, P.D.; Oldenburg, C.M.; Nicot, J.-P.

    2011-05-15

    Emission of carbon dioxide from fossil-fueled power generation stations contributes to global climate change. Storage of this carbon dioxide within the pores of geologic strata (geologic carbon storage) is one approach to mitigating the climate change that would otherwise occur. The large storage volume needed for this mitigation requires injection into brine-filled pore space in reservoir strata overlain by cap rocks. One of the main concerns of storage in such rocks is leakage via faults. In the early stages of site selection, site-specific fault coverages are often not available. This necessitates a method for using available fault data to develop an estimate of the likelihood of injected carbon dioxide encountering and migrating up a fault, primarily due to buoyancy. Fault population statistics provide one of the main inputs to calculate the encounter probability. Previous fault population statistics work is shown to be applicable to areal fault density statistics. This result is applied to a case study in the southern portion of the San Joaquin Basin with the result that the probability of a carbon dioxide plume from a previously planned injection had a 3% chance of encountering a fully seal offsetting fault.

  16. Detection and extraction of fault surfaces in 3D seismic data Israel Cohen1

    E-Print Network [OSTI]

    Cohen, Israel

    for seismic interpretation. INTRODUCTION Fault surfaces are common subterranean structures that are asso that are unrelated to faults. Furthermore, creating a consistent geological interpretation from large 3D-seismicDetection and extraction of fault surfaces in 3D seismic data Israel Cohen1 , Nicholas Coult2

  17. Geology of the Yucca Mountain Region, Chapter in Stuckless, J.S., ED., Yucca Mountain, Nevada - A Proposed Geologic Repository for High-Level Radioactive Waste

    SciTech Connect (OSTI)

    J.S. Stuckless; D. O'Leary

    2006-09-25

    Yucca Mountain has been proposed as the site for the Nation's first geologic repository for high-level radioactive waste. This chapter provides the geologic framework for the Yucca Mountain region. The regional geologic units range in age from late Precambrian through Holocene, and these are described briefly. Yucca Mountain is composed dominantly of pyroclastic units that range in age from 11.4 to 15.2 Ma. The proposed repository would be constructed within the Topopah Spring Tuff, which is the lower of two major zoned and welded ash-flow tuffs within the Paintbrush Group. The two welded tuffs are separated by the partly to nonwelded Pah Canyon Tuff and Yucca Mountain Tuff, which together figure prominently in the hydrology of the unsaturated zone. The Quaternary deposits are primarily alluvial sediments with minor basaltic cinder cones and flows. Both have been studied extensively because of their importance in predicting the long-term performance of the proposed repository. Basaltic volcanism began about 10 Ma and continued as recently as about 80 ka with the eruption of cones and flows at Lathrop Wells, approximately 10 km south-southwest of Yucca Mountain. Geologic structure in the Yucca Mountain region is complex. During the latest Paleozoic and Mesozoic, strong compressional forces caused tight folding and thrust faulting. The present regional setting is one of extension, and normal faulting has been active from the Miocene through to the present. There are three major local tectonic domains: (1) Basin and Range, (2) Walker Lane, and (3) Inyo-Mono. Each domain has an effect on the stability of Yucca Mountain.

  18. Algorithmic folding complexity

    E-Print Network [OSTI]

    Cardinal, Jean

    2009-01-01

    How do we most quickly fold a paper strip (modeled as a line) to obtain a desired mountain-valley pattern of equidistant creases (viewed as a binary string)? Define the folding complexity of a mountain-valley string as the ...

  19. Colorado Regional Faults

    SciTech Connect (OSTI)

    Hussein, Khalid

    2012-02-01

    Citation Information: Originator: Earth Science &Observation Center (ESOC), CIRES, University of Colorado at Boulder Originator: Colorado Geological Survey (CGS) Publication Date: 2012 Title: Regional Faults Edition: First Publication Information: Publication Place: Earth Science & Observation Center, Cooperative Institute for Research in Environmental Science, University of Colorado, Boulder Publisher: Earth Science &Observation Center (ESOC), CIRES, University of Colorado at Boulder Description: This layer contains the regional faults of Colorado Spatial Domain: Extent: Top: 4543192.100000 m Left: 144385.020000 m Right: 754585.020000 m Bottom: 4094592.100000 m Contact Information: Contact Organization: Earth Science &Observation Center (ESOC), CIRES, University of Colorado at Boulder Contact Person: Khalid Hussein Address: CIRES, Ekeley Building Earth Science & Observation Center (ESOC) 216 UCB City: Boulder State: CO Postal Code: 80309-0216 Country: USA Contact Telephone: 303-492-6782 Spatial Reference Information: Coordinate System: Universal Transverse Mercator (UTM) WGS’1984 Zone 13N False Easting: 500000.00000000 False Northing: 0.00000000 Central Meridian: -105.00000000 Scale Factor: 0.99960000 Latitude of Origin: 0.00000000 Linear Unit: Meter Datum: World Geodetic System 1984 (WGS ’984) Prime Meridian: Greenwich Angular Unit: Degree Digital Form: Format Name: Shape file

  20. Fold and thrust partitioning in a contracting fold belt: Insights from the 1931 Mach earthquake in Baluchistan

    E-Print Network [OSTI]

    Bilham, Roger

    models of the earthquake cycle in this fold and thrust belt suggest that slip on the frontal thrust fault is $5 mm/yr. Hence the minimum renewal time between earthquakes with 1.2-m mean displacement should is taken into account the minimum renewal time may exceed 2000 years. Citation: Szeliga, W., R. Bilham, D

  1. Is there a discrepancy between geological and geodetic slip rates along the San

    E-Print Network [OSTI]

    Sandwell, David T.

    Is there a discrepancy between geological and geodetic slip rates along the San Andreas Fault of Oceanography, University of California, San Diego, La Jolla, California, USA, 2 Department of Geology along the San Andreas Fault System (SAFS), based on elastic half-space models, show a discrepancy

  2. Bulletin of the Seismological Society of America, Vol. 94, No. 2, pp. 747752, April 2004 Activity of the Offshore NewportInglewood Rose Canyon Fault Zone,

    E-Print Network [OSTI]

    Shearer, Peter

    Activity of the Offshore Newport­Inglewood Rose Canyon Fault Zone, Coastal Southern California, from Relocated Microseismicity by Lisa B. Grant and Peter M. Shearer Abstract An offshore zone of faulting faults and Quaternary folds have been imaged by seismic reflection profiling along the offshore fault

  3. For permission to copy, contact editing@geosociety.org 2004 Geological Society of America594

    E-Print Network [OSTI]

    stratigraphy in the western equatorial region of Mars based on thrust fault­related fold topography. In this paper, we show how mechanical stratigraphy can be inferred from the topography of thrust fault- flow and ejecta lithologic sequences. Keywords: thrust fault, wrinkle ridge, to- E-mail: chriso

  4. Geology Major www.geology.pitt.edu/undergraduate/geology.html

    E-Print Network [OSTI]

    Jiang, Huiqiang

    Geology Major www.geology.pitt.edu/undergraduate/geology.html Revised: 03/2013 Geology is a scientific discipline that aims to understand every aspect of modern and ancient Earth. A degree in geology the field of geology, environmental and geotechnical jobs exist for people with BS degrees. A master

  5. High resolution, shallow seismic reflection survey of the Pen Branch fault

    SciTech Connect (OSTI)

    Stieve, A.

    1991-05-15

    The purpose of this project, at the Savannah River River Site (SRS) was to acquire, process, and interpret 28 km (17.4 miles) of high resolution seismic reflection data taken across the trace of the Pen Branch fault and other suspected, intersecting north-south trending faults. The survey was optimized for the upper 300 ft of geologic strata in order to demonstrate the existence of very shallow, flat lying horizons, and to determine the depth of the fault or to sediments deformed by the fault. Field acquisition and processing parameters were selected to define small scale spatial variability and structural features in the vicinity of the Pen Branch fault leading to the definition and the location of the Pen Branch fault, the shallowest extent of the fault, and the quantification of the sense and magnitude of motion. Associated geophysical, borehole, and geologic data were incorporated into the investigation to assist in the determination of optimal parameters and aid in the interpretation.

  6. Merguerian, Charles, 1996b, Evidence for post-glacial surface faulting in New York City. The dynamic relationship between earthquakes and movement on reactivated faults

    E-Print Network [OSTI]

    Merguerian, Charles

    Merguerian, Charles, 1996b, Evidence for post-glacial surface faulting in New York City in New York City (abs.): Geological Society of America Abstracts with Programs, v. 28, no. 3, p. 81

  7. Simulations of Protein Folding

    E-Print Network [OSTI]

    Michael Cahill; Mark Fleharty; Kevin Cahill

    1999-09-17

    We have developed a simple, phenomenological, Monte-Carlo code that predicts the three-dimensional structure of globular proteins from the DNA sequences that define them. We have applied this code to two small proteins, the villin headpiece (1VII) and cole1 rop (1ROP). Our code folds both proteins to within 5 A rms of their native structures.

  8. INVERSE PROTEIN FOLDING, HIERARCHICAL OPTIMISATION

    E-Print Network [OSTI]

    Halligan, Daniel

    INVERSE PROTEIN FOLDING, HIERARCHICAL OPTIMISATION AND TIE KNOTS Thomas M. A. Fink st. john Introduction 3 1.1 Inverse Protein Folding 3 1.2 Hierarchical Optimisation 5 1.3 Tie Knots 6 1.4 Schematic Organisation 6 1.5 Publications 9 2 Protein Folding, Inverse Protein Folding and Energy Landscapes 10 2

  9. Structure and evolution of the active fold and thrust belt of southwestern Taiwan using GPS geodesy 

    E-Print Network [OSTI]

    Hickman, John Bibb

    1999-01-01

    Using GPS and published geologic data, we have crographics. investigated the current deformation rates and local kinematic relationships for the southern region of the Taiwan fold-thrust belt. The GPS measurements suggest complex motions across...

  10. Protein folding and cosmology

    E-Print Network [OSTI]

    P. F. Gonzalez-Diaz; C. L. Siguenza

    1997-06-04

    Protein denaturing induced by supercooling is interpreted as a process where some or all internal symmetries of the native protein are spontaneously broken. Hence, the free-energy potential corresponding to a folding-funnel landscape becomes temperature-dependent and describes a phase transition. The idea that deformed vortices could be produced in the transition induced by temperature quenching, from native proteins to unfolded conformations is discussed in terms of the Zurek mechanism that implements the analogy between vortices, created in the laboratory at low energy, and the cosmic strings which are thought to have been left after symmetry breaking phase transitions in the early universe. An experiment is proposed to test the above idea which generalizes the cosmological analogy to also encompass biological systems and push a step ahead the view that protein folding is a biological equivalent of the big bang.

  11. Protein folding and heteropolymers

    E-Print Network [OSTI]

    T. Garel; H. Orland; E. Pitard

    1997-06-12

    We present a statistical mechanics approach to the protein folding problem. We first review some of the basic properties of proteins, and introduce some physical models to describe their thermodynamics. These models rely on a random heteropolymeric description of these non random biomolecules. Various kinds of randomness are investigated, and the connection with disordered systems is discussed. We conclude by a brief study of the dynamics of proteins.

  12. Microstructures and Rheology of a Limestone-Shale Thrust Fault 

    E-Print Network [OSTI]

    Wells, Rachel Kristen

    2011-02-22

    AND RHEOLOGY OF A LIMESTONE-SHALE THRUST FAULT A Thesis by RACHEL KRISTEN WELLS Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE December... 2010 Major Subject: Geology MICROSTRUCTURES AND RHEOLOGY OF A LIMESTONE-SHALE THRUST FAULT A Thesis by RACHEL KRISTEN WELLS Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment...

  13. Geological flows

    E-Print Network [OSTI]

    Yu. N. Bratkov

    2008-11-19

    In this paper geology and planetology are considered using new conceptual basis of high-speed flow dynamics. Recent photo technics allow to see all details of a flow, 'cause the flow is static during very short time interval. On the other hand, maps and images of many planets are accessible. Identity of geological flows and high-speed gas dynamics is demonstrated. There is another time scale, and no more. All results, as far as the concept, are new and belong to the author. No formulae, pictures only.

  14. Effects of burial history, rock ductility and recovery magnitude on inversion of normal faulted strata 

    E-Print Network [OSTI]

    Kuhle, Nathan John

    2001-01-01

    , and distributed fracturing and folding. The relative contribution of these mechanisms depends on the relative ductility of the rock and magnitude of inversion. Reverse slip on the normal fault and distributed fracturing occur during early stages of inversion...

  15. Optimal fault location 

    E-Print Network [OSTI]

    Knezev, Maja

    2008-10-10

    sequence of events newly obtained recording belongs. Software prototype of the proposed automated fault location analysis is developed using Java programming language. Fault location analysis is automatically triggered by appearance of new event files in a...

  16. Heavy oil reservoirs in the Tulare Fold Belt, Cymric-McKittrick fields, Kern County, California

    SciTech Connect (OSTI)

    Farley, T. (Chevron U.S.A., Bakersfield, CA (USA))

    1990-05-01

    The Tulare fold belt is a series of asymmetric, generally northeast-verging anticlines and synclines in the Pliocene-Pleistocene Tulare Formation that trend northwestward through the Cymric-McKittrick fields. Anticlines within the deformed belt generally originated as fault propagation folds above decollements, the most important of which is the regional decollement on top of the Amnicola sand, the basal Tulare unit. The Amnicola decollement is the northeast subsurface extension of the McKittrick thrust, a low-angle fault that has displaced the Miocene Antelope shale over the Pliocene San Joaquin Formation and locally over the Tulare Formation. The Amnicola decollement is itself deformed by folding related to a younger, deeper decollement near the base of the San Joaquin Formation that merges westward with the Amnicola decollement and defines a zone of faulting associated with the McKittrick thrust Heavy oil reservoirs in the Tulare Formation are currently undergoing active development by thermal recovery techniques. In general, the geometry of heavy oil reservoirs is determined by location within the Tulare fold belt combined with the position of a subhorizontal fluid level trap that forms the updip limit of fluid-saturated rock Reservoir geometry is complicated by complex local structure, discontinuous stratigraphy, and partial depletion of heavy oil reservoirs by fluid withdrawal due to gravity drainage. Proper resolution of fold geometry, fault geometry, and position of the fluid level trap is crucial to the design and monitoring of thermal recovery projects within the Tulare fold belt.

  17. Recurrent faulting and petroleum accumulation, Cat Creek Anticline, central Montana

    SciTech Connect (OSTI)

    Nelson, W.J. (Illinois State Geological Survey, Champaign (United States))

    1991-06-01

    The Cat Creek anticline, scene of central Montana's first significant oil discovery, is underlain by a south-dipping high-angle fault (Cat Creek fault) that has undergone several episodes of movement with opposite sense of displacement. Borehole data suggest that the Cat Creek fault originated as a normal fault during Proterozoic rifting concurrent with deposition of the Belt Supergroup. Reverse faulting took place in Late Cambrian time, and again near the end of the Devonian Period. The Devonian episode, coeval with the Antler orogeny, raised the southern block several hundred feet. The southern block remained high through Meramecian time, then began to subside. Post-Atokan, pre-Middle Jurassic normal faulting lowered the southern block as much as 1,500 ft. During the Laramide orogeny (latest Cretaceous-Eocene) the Cat Creek fault underwent as much as 4,000 ft of reverse displacement and a comparable amount of left-lateral displacement. The Cat Creek anticline is a fault-propagation fold; en echelon domes and listric normal faults developed along its crest in response to wrenching. Oil was generated mainly in organic-rich shales of the Heath Formation (upper Chesterian Series) and migrated upward along tectonic fractures into Pennsylvanian, Jurassic, and Cretaceous reservoir rocks in structural traps in en echelon domes. Production has been achieved only from those domes where structural closure was retained from Jurassic through Holocene time.

  18. Folding and binding Editorial overview

    E-Print Network [OSTI]

    is on the study of how protein folding, unfolding and aggregation reactions commence, and on the study of California, Berkeley. Her lab focuses on studies of protein folding and dynamics. Currently she­based kinetics. Much of the progress that has been made in the past fifty years in the study of protein folding

  19. Computer Simulations of Protein Folding

    E-Print Network [OSTI]

    Sorin, Eric J.

    CHAPTER 8 Computer Simulations of Protein Folding VIJAY S. PANDE , ERIC J. SORIN , CHRISTOPHER D, CA 94305, USA 8.1 Introduction: Goals and Challenges of Simulating Protein Folding Computer as well as recent applications of this methodology. 8.1.1 Simulating Protein Folding Proteins play

  20. Petaflop Computing for Protein Folding

    E-Print Network [OSTI]

    Izaguirre, Jesús A.

    "SIAM01p 2000/12/4 page 1 Petaflop Computing for Protein Folding Shannon K. Kuntz, Richard C. Murphy, Michael T. Niemier, Jesus Izaguirre, and Peter M. Kogge 1 Introduction Protein Folding the protein folding problem, while Silicon Graphics has been continually working to produce more powerful

  1. Theoretical Perspectives on Protein Folding

    E-Print Network [OSTI]

    Thirumalai, Devarajan

    Theoretical Perspectives on Protein Folding D. Thirumalai,1 Edward P. O'Brien,2 Greg Morrison,3 Understanding how monomeric proteins fold under in vitro conditions is crucial to describing their functions remains to be done to solve the protein folding problem in the broadest sense. 159 Annu.Rev.Biophys.2010

  2. Protein folding in the ER.

    SciTech Connect (OSTI)

    Stevens, F. J.; Argon, Y.; Biosciences Division; Univ. of Chicago

    1999-10-01

    The endoplasmic reticulum (ER) is a major protein folding compartment for secreted, plasma membrane and organelle proteins. Each of these newly-synthesized polypeptides folds in a deterministic process, affected by the unique conditions that exist in the ER. An understanding of protein folding in the ER is a fundamental biomolecular challenge at two levels. The first level addresses how the amino acid sequence programs that polypeptide to efficiently arrive at a particular fold out of a multitude of alternatives, and how different sequences obtain similar folds. At the second level are the issues introduced by folding not in the cytosol, but in the ER, including the risk of aggregation in a molecularly crowded environment, accommodation of post-translational modifications and the compatibility with subsequent intracellular trafficking. This review discusses both the physicochemical and cell biological constraints of folding, which are the challenges that the ER molecular chaperones help overcome.

  3. Multilayered folding with voids

    E-Print Network [OSTI]

    Timothy Dodwell; Giles Hunt; Mark Peletier; Chris Budd

    2011-05-24

    In the deformation of layered materials such as geological strata, or stacks of paper, mechanical properties compete with the geometry of layering. Smooth, rounded corners lead to voids between the layers, while close packing of the layers results in geometrically-induced curvature singularities. When voids are penalized by external pressure, the system is forced to trade off these competing effects, leading to sometimes striking periodic patterns. In this paper we construct a simple model of geometrically nonlinear multi-layered structures under axial loading and pressure confinement, with non-interpenetration conditions separating the layers. Energy minimizers are characterized as solutions of a set of fourth-order nonlinear differential equations with contact-force Lagrange multipliers, or equivalently of a fourth-order free-boundary problem. We numerically investigate the solutions of this free boundary problem, and compare them with the periodic solutions observed experimentally.

  4. Multilayered folding with voids

    E-Print Network [OSTI]

    Dodwell, Timothy; Peletier, Mark; Budd, Chris

    2011-01-01

    In the deformation of layered materials such as geological strata, or stacks of paper, mechanical properties compete with the geometry of layering. Smooth, rounded corners lead to voids between the layers, while close packing of the layers results in geometrically-induced curvature singularities. When voids are penalized by external pressure, the system is forced to trade off these competing effects, leading to sometimes striking periodic patterns. In this paper we construct a simple model of geometrically nonlinear multi-layered structures under axial loading and pressure confinement, with non-interpenetration conditions separating the layers. Energy minimizers are characterized as solutions of a set of fourth-order nonlinear differential equations with contact-force Lagrange multipliers, or equivalently of a fourth-order free-boundary problem. We numerically investigate the solutions of this free boundary problem, and compare them with the periodic solutions observed experimentally.

  5. GEOLOGY, B.S.G. GEOLOGY OPTION

    E-Print Network [OSTI]

    Hamburger, Peter

    GEOLOGY, B.S.G. GEOLOGY OPTION (Fall 2015-Summer 2016) IPFW Residency Requirements: ____ 32 credits GEOLOGY BSG CORE COURSES (66 credits) *Note: grades of C- or better required in GEOL courses/2.0 GPA ______ 3 - 5 Credits in Geology or Geography with Laboratory (Select 1 of the following): ___3 GEOL G103

  6. Theoretical Perspectives on Protein Folding

    E-Print Network [OSTI]

    D. Thirumalai; Edward P. O'Brien; Greg Morrison; Changbong Hyeon

    2010-07-18

    Understanding how monomeric proteins fold under in vitro conditions is crucial to describing their functions in the cellular context. Significant advances both in theory and experiments have resulted in a conceptual framework for describing the folding mechanisms of globular proteins. The experimental data and theoretical methods have revealed the multifaceted character of proteins. Proteins exhibit universal features that can be determined using only the number of amino acid residues (N) and polymer concepts. The sizes of proteins in the denatured and folded states, cooperativity of the folding transition, dispersions in the melting temperatures at the residue level, and time scales of folding are to a large extent determined by N. The consequences of finite N especially on how individual residues order upon folding depends on the topology of the folded states. Such intricate details can be predicted using the Molecular Transfer Model that combines simulations with measured transfer free energies of protein building blocks from water to the desired concentration of the denaturant. By watching one molecule fold at a time, using single molecule methods, the validity of the theoretically anticipated heterogeneity in the folding routes, and the N-dependent time scales for the three stages in the approach to the native state have been established. Despite the successes of theory, of which only a few examples are documented here, we conclude that much remains to be done to solve the "protein folding problem" in the broadest sense.

  7. 3D/4D MODELLING, VISUALIZATION AND INFORMATION FRAMEWORKS: CURRENT U.S. GEOLOGICAL SURVEY PRACTICE

    E-Print Network [OSTI]

    -slip scenarios; · Geologic models to define, assess, and bound resources and/or lithologic properties (water, oil frameworks and tectonic models to assess past tectonic displacements, earthquake potential, and fault properties) and also describe the methods and te

  8. Scale dependencies in structural analysis as illustrated by chevron folds along the Beartooth Front, Wyoming 

    E-Print Network [OSTI]

    Cook, Robert Annan

    1972-01-01

    of fracture sets found in folded layered rocks and their relationship with fold axis (modified from Stearns, 1968) ~ . 30 Kinking of laminae structures along set 4, fractures in shale . . . . . . . . . . . 31 lla, b, and c. Photographs of typical arcuate... are also under this category. The ductility is assessed by the intensity of layer descrip- tion from fractures and faults. The materials previously mentioned are nearly free of such structures. This ab- sence is not only true for the center...

  9. Mesozoic and Cenozoic tectonics of the Mre Trndelag Fault Complex, central Norway: constraints from new apatite

    E-Print Network [OSTI]

    Torsvik, Trond Helge

    Mesozoic and Cenozoic tectonics of the Møre Trøndelag Fault Complex, central Norway: constraints.H. Gabrielsen c,2 a Geological Survey of Norway, Leiv Erikssons vei 39, N-7491 Trondheim, Norway b Faculty Geological Institute, University of Bergen, Allegt. 41, N-5007, Bergen, Norway Available online 17 April 2004

  10. Graphene folding on flat substrates

    SciTech Connect (OSTI)

    Chen, Xiaoming; Zhao, Yadong; Ke, Changhong, E-mail: cke@binghamton.edu [Department of Mechanical Engineering, State University of New York at Binghamton, Binghamton, New York 13902 (United States); Zhang, Liuyang; Wang, Xianqiao [College of Engineering, University of Georgia, Athens, Georgia 30602 (United States)

    2014-10-28

    We present a combined experimental-theoretical study of graphene folding on flat substrates. The structure and deformation of the folded graphene sheet are experimentally characterized by atomic force microscopy. The local graphene folding behaviors are interpreted based on nonlinear continuum mechanics modeling and molecular dynamics simulations. Our study on self-folding of a trilayer graphene sheet reports a bending stiffness of about 6.57?eV, which is about four times the reported values for monolayer graphene. Our results reveal that an intriguing free sliding phenomenon occurs at the interlayer van der Waals interfaces during the graphene folding process. This work demonstrates that it is a plausible venue to quantify the bending stiffness of graphene based on its self-folding conformation on flat substrates. The findings reported in this work are useful to a better understanding of the mechanical properties of graphene and in the pursuit of its applications.

  11. Fault simulation and test generation for small delay faults 

    E-Print Network [OSTI]

    Qiu, Wangqi

    2007-04-25

    Delay faults are an increasingly important test challenge. Traditional delay fault models are incomplete in that they model only a subset of delay defect behaviors. To solve this problem, a more realistic delay fault model has been developed which...

  12. Compact intermediates in RNA folding

    SciTech Connect (OSTI)

    Woodson, S.A. (JHU)

    2011-12-14

    Large noncoding RNAs fold into their biologically functional structures via compact yet disordered intermediates, which couple the stable secondary structure of the RNA with the emerging tertiary fold. The specificity of the collapse transition, which coincides with the assembly of helical domains, depends on RNA sequence and counterions. It determines the specificity of the folding pathways and the magnitude of the free energy barriers to the ensuing search for the native conformation. By coupling helix assembly with nascent tertiary interactions, compact folding intermediates in RNA also play a crucial role in ligand binding and RNA-protein recognition.

  13. A Handbook for Geology Students Why study Geology?.............................................................................................3

    E-Print Network [OSTI]

    Thaxton, Christopher S.

    1 A Handbook for Geology Students #12;2 Contents Why study Geology ..................................................................................7 Why Appalachian Geology?................................................................................10 Geology Faculty and Staff

  14. Merguerian, Charles, 1986c, The bedrock geology of New York City (abs.): Abstracts with Programs, Symposium on The Geology of Southern New York, Hofstra University, p. 8.

    E-Print Network [OSTI]

    Merguerian, Charles

    Merguerian, Charles, 1986c, The bedrock geology of New York City (abs.): Abstracts with Programs, Symposium on The Geology of Southern New York, Hofstra University, p. 8. Detailed mapping and sampling, and NW trends. Recent seismicity in southeastern New York has refocused attention on these faults

  15. PHYSICAL GEOLOGY LABORATORY MANUAL

    E-Print Network [OSTI]

    Merguerian, Charles

    PHYSICAL GEOLOGY LABORATORY MANUAL Geology 001 Eleventh Edition by Professors Charles Merguerian and J Bret Bennington Department of Geology Hofstra University © 2010 #12;ii Table of Contents Lab and Find Out More about Geology at Hofstra Email: Geology professors can be contacted via Email: Full

  16. Effect of faulting on ground-water movement in the Death Valley region, Nevada and California

    SciTech Connect (OSTI)

    Faunt, C.C.

    1997-12-31

    This study characterizes the hydrogeologic system of the Death Valley region, an area covering approximately 100,000 square kilometers. The study also characterizes the effects of faults on ground-water movement in the Death Valley region by synthesizing crustal stress, fracture mechanics,a nd structural geologic data. The geologic conditions are typical of the Basin and Range Province; a variety of sedimentary and igneous intrusive and extrusive rocks have been subjected to both compressional and extensional deformation. Faulting and associated fracturing is pervasive and greatly affects ground-water flow patterns. Faults may become preferred conduits or barriers to flow depending on whether they are in relative tension, compression, or shear and other factors such as the degree of dislocations of geologic units caused by faulting, the rock types involved, the fault zone materials, and the depth below the surface. The current crustal stress field was combined with fault orientations to predict potential effects of faults on the regional ground-water flow regime. Numerous examples of fault-controlled ground-water flow exist within the study area. Hydrologic data provided an independent method for checking some of the assumptions concerning preferential flow paths. 97 refs., 20 figs., 5 tabs.

  17. Solar system fault detection

    DOE Patents [OSTI]

    Farrington, R.B.; Pruett, J.C. Jr.

    1984-05-14

    A fault detecting apparatus and method are provided for use with an active solar system. The apparatus provides an indication as to whether one or more predetermined faults have occurred in the solar system. The apparatus includes a plurality of sensors, each sensor being used in determining whether a predetermined condition is present. The outputs of the sensors are combined in a pre-established manner in accordance with the kind of predetermined faults to be detected. Indicators communicate with the outputs generated by combining the sensor outputs to give the user of the solar system and the apparatus an indication as to whether a predetermined fault has occurred. Upon detection and indication of any predetermined fault, the user can take appropriate corrective action so that the overall reliability and efficiency of the active solar system are increased.

  18. Solar system fault detection

    DOE Patents [OSTI]

    Farrington, Robert B. (Wheatridge, CO); Pruett, Jr., James C. (Lakewood, CO)

    1986-01-01

    A fault detecting apparatus and method are provided for use with an active solar system. The apparatus provides an indication as to whether one or more predetermined faults have occurred in the solar system. The apparatus includes a plurality of sensors, each sensor being used in determining whether a predetermined condition is present. The outputs of the sensors are combined in a pre-established manner in accordance with the kind of predetermined faults to be detected. Indicators communicate with the outputs generated by combining the sensor outputs to give the user of the solar system and the apparatus an indication as to whether a predetermined fault has occurred. Upon detection and indication of any predetermined fault, the user can take appropriate corrective action so that the overall reliability and efficiency of the active solar system are increased.

  19. Principles of Historical Geology Geology 331

    E-Print Network [OSTI]

    Kammer, Thomas

    Unconformity #12;Application of the Principles of Historical Geology. What is present on the seismic cross geologist to understand stratigraphy and make correlations. #12;#12;William Smith's Geologic Map of England

  20. QUEEN'S UNIVERSITY GEOLOGICAL SCIENCES AND GEOLOGICAL ENGINEERING

    E-Print Network [OSTI]

    Sedimentology dalrymple@geol.queensu.ca Dr. M. Diederichs (Sabb Jan 15-July 15) Eng Geology; Geomech; Structural) Engineering Geology; Geohazards jhutchin@geol.queensu.ca Dr. N. James Sedimentology james@geol.queensu.ca Dr

  1. Fast events in protein folding

    SciTech Connect (OSTI)

    Woodruff, W.; Callender, R.; Causgrove, T.; Dyer, R.; Williams, S.

    1996-04-01

    The primary objective of this work was to develop a molecular understanding of how proteins achieve their native three-dimensional (folded) structures. This requires the identification and characterization of intermediates in the protein folding process on all relevant timescales, from picoseconds to seconds. The short timescale events in protein folding have been entirely unknown. Prior to this work, state-of-the-art experimental approaches were limited to milliseconds or longer, when much of the folding process is already over. The gap between theory and experiment is enormous: current theoretical and computational methods cannot realistically model folding processes with lifetimes longer than one nanosecond. This unique approach to employ laser pump-probe techniques that combine novel methods of laser flash photolysis with time-resolved vibrational spectroscopic probes of protein transients. In this scheme, a short (picosecond to nanosecond) laser photolysis pulse was used to produce an instantaneous pH or temperature jump, thereby initiating a protein folding or unfolding reaction. Structure-specific, time-resolved vibrational probes were then used to identify and characterize protein folding intermediates.

  2. Transient fault modeling and fault injection simulation 

    E-Print Network [OSTI]

    Yuan, Xuejun

    1996-01-01

    An accurate transient fault model is presented in this thesis. A 7-term exponential current upset model is derived from the results of a device-level, 3-dimensional, single-event-upset simulation. A curve-fitting algorithm is used to extract...

  3. The Wallula fault and tectonic framework of south-central Washington, as interpreted from magnetic and gravity anomalies

    SciTech Connect (OSTI)

    Blakely, Richard J.; Sherrod, Brian; Weaver, Craig; Wells, Ray E.; Rohay, Alan C.

    2014-06-11

    Magnetic and gravity data, collected in south-central Washington near the Yakima Fold and Thrust Belt (YFTB) are used to model upper crustal structure, the extent of the late Columbia River Basalt flow named the Ice Harbor member, the vertical conduits (dikes) that the Ice Harbor erupted from, and whether the dikes are offset or affected by faulting on the Wallula Fault zone.

  4. Effective potentials for Folding Proteins

    E-Print Network [OSTI]

    Nan-yow Chen; Zheng-Yao Su; Chung-Yu Mou

    2006-01-28

    A coarse-grained off-lattice model that is not biased in any way to the native state is proposed to fold proteins. To predict the native structure in a reasonable time, the model has included the essential effects of water in an effective potential. Two new ingredients, the dipole-dipole interaction and the local hydrophobic interaction, are introduced and are shown to be as crucial as the hydrogen bonding. The model allows successful folding of the wild-type sequence of protein G and may have provided important hints to the study of protein folding.

  5. Development of Hydrologic Characterization Technology of Fault Zones

    SciTech Connect (OSTI)

    Karasaki, Kenzi; Onishi, Tiemi; Wu, Yu-Shu

    2008-03-31

    Through an extensive literature survey we find that there is very limited amount of work on fault zone hydrology, particularly in the field using borehole testing. The common elements of a fault include a core, and damage zones. The core usually acts as a barrier to the flow across it, whereas the damage zone controls the flow either parallel to the strike or dip of a fault. In most of cases the damage zone isthe one that is controlling the flow in the fault zone and the surroundings. The permeability of damage zone is in the range of two to three orders of magnitude higher than the protolith. The fault core can have permeability up to seven orders of magnitude lower than the damage zone. The fault types (normal, reverse, and strike-slip) by themselves do not appear to be a clear classifier of the hydrology of fault zones. However, there still remains a possibility that other additional geologic attributes and scaling relationships can be used to predict or bracket the range of hydrologic behavior of fault zones. AMT (Audio frequency Magneto Telluric) and seismic reflection techniques are often used to locate faults. Geochemical signatures and temperature distributions are often used to identify flow domains and/or directions. ALSM (Airborne Laser Swath Mapping) or LIDAR (Light Detection and Ranging) method may prove to be a powerful tool for identifying lineaments in place of the traditional photogrammetry. Nonetheless not much work has been done to characterize the hydrologic properties of faults by directly testing them using pump tests. There are some uncertainties involved in analyzing pressure transients of pump tests: both low permeability and high permeability faults exhibit similar pressure responses. A physically based conceptual and numerical model is presented for simulating fluid and heat flow and solute transport through fractured fault zones using a multiple-continuum medium approach. Data from the Horonobe URL site are analyzed to demonstrate the proposed approach and to examine the flow direction and magnitude on both sides of a suspected fault. We describe a strategy for effective characterization of fault zone hydrology. We recommend conducting a long term pump test followed by a long term buildup test. We do not recommend isolating the borehole into too many intervals. We do recommend ensuring durability and redundancy for long term monitoring.

  6. Protein Folding Sculpting Evolutionary Change

    E-Print Network [OSTI]

    Lindquist, Susan

    Our work suggests that the forces that govern protein folding exert a profound effect on how genotypes are translated into phenotypes and that this in turn has strong effects on evolutionary processes. Molecular chaperones, ...

  7. Introduction to Grid computing Protein folding

    E-Print Network [OSTI]

    Boyar, Joan

    Introduction to Grid computing Protein folding Protein folding is an extremely hot topic in medical research these days, unfortunately protein folding is extremely computationally demanding and requires a huge supercomputer to fold even the simplest proteins. Luckily the task of calculating protein foldings

  8. Regional Geologic Map

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Lane, Michael

    2013-06-28

    Shaded relief base with Hot Pot project area, generalized geology, selected mines, and major topographic features

  9. Regional Geologic Map

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Lane, Michael

    Shaded relief base with Hot Pot project area, generalized geology, selected mines, and major topographic features

  10. GEOLOGY (GEOL) Robinson Foundation

    E-Print Network [OSTI]

    Dresden, Gregory

    177Geology GEOLOGY (GEOL) Robinson Foundation PROFESSOR HARBOR ASSOCIATE PROFESSORS KNAPP, CONNORS ASSISTANT PROFESSORS GREER, RAHL MAJORS BACHELOR OF SCIENCE A major in geology leading to a Bachelor of Science degree consists of 50 credits as follows: 1. Geology 160, 185, 211, 311, 330, 350

  11. Characterization of protein folding intermediates

    SciTech Connect (OSTI)

    Kim, P.S.

    1986-01-01

    The three-dimensional structure of a protein is encoded in its linear sequence of amino acids. Studies of protein folding are aimed at understanding the nature of this code which translates one-dimensional information to three-dimensions. It is now well-established that protein folding intermediates exist and can be populated significantly under some conditions. A method to characterize kinetic folding intermediates is described. The method takes advantage of the decrease in exchange rates between amide protons (i.e., peptide backbone NH) and solvent water protons, when the amide proton is involved in structure. The feasibility of using amide proton exchange to pulse-label proteins during folding has been demonstrated using (/sup 3/H)-H/sub 2/O. The results with ribonuclease A (RNase A) support a framework model for folding, in which the secondary structure of a protein is formed before tertiary structure changes are complete. Extension of these studies using NMR should permit characterization of early secondary structure folding frameworks.

  12. Mechanical characteristics of folds in Upper Cretaceous strata in the Disturbed Belt of northwestern Montana 

    E-Print Network [OSTI]

    Gilbert, Pat Kader

    1974-01-01

    MECHANICAL CHARACTERISTICS OF FOLDS IN UPPER CRETACEOUS STRATA IN THE DISTURBED BELT OF NORTHWESTERN MONTANA A Thesis by PAT KADER GILBERT Submitted to the Graduate College of Texas A&M University in partial fulfillment of the requirements... for the degree of MASTER OF SCIENCE May 1974 Major Subject: Geology MECHANICAL CHARACTERISTICS OF FOLDS IN UPPER CRETACEOUS STRATA IN THE DISTURBED BELT OF NORTHWESTERN MONTANA A Thesis by PAT KADER GILBERT Approved as to style and content by: (Chairman...

  13. A motion planning approach to protein folding 

    E-Print Network [OSTI]

    Song, Guang

    2004-09-30

    Protein folding is considered to be one of the grand challenge problems in biology. Protein folding refers to how a protein's amino acid sequence, under certain physiological conditions, folds into a stable close-packed ...

  14. A Novel Topology for Representing Protein Folds

    E-Print Network [OSTI]

    Segal, Mark R

    2009-01-01

    1993). Cooperativity in protein-folding kinetics. Proc NatlVoelz VA. (2007). The protein folding problem: when will itMS, Weikl TR. (2008). The protein folding problem. Annu Rev

  15. 2006 Geological Society of America. For permission to copy, contact Copyright Permissions, GSA, or editing@geosociety.org. Geology; October 2006; v. 34; no. 10; p. 837840; doi: 10.1130/G22610.1; 3 figures; 1 table. 837

    E-Print Network [OSTI]

    ; 1 table. 837 Fault dating in the Canadian Rocky Mountains: Evidence for late Cretaceous and early, California 94025, USA ABSTRACT Fault rocks from the classic Rocky Mountain foreland fold-and-thrust belt of upper-crustal kinematics and regional tectonic analysis of ancient orogens. Keywords: Rocky Mountains

  16. Search for: "protein folding" | DOE PAGES

    Office of Scientific and Technical Information (OSTI)

    protein folding" Find + Advanced Search Advanced Search All Fields: "protein folding" Title: Full Text: Bibliographic Data: Creator Author: Name Name ORCID Search Authors...

  17. SciTech Connect: "protein folding"

    Office of Scientific and Technical Information (OSTI)

    protein folding" Find + Advanced Search Term Search Semantic Search Advanced Search All Fields: "protein folding" Semantic Semantic Term Title: Full Text: Bibliographic Data:...

  18. Using Vertical Rock Uplift Patterns to Constrain the Three-Dimensional Fault Configuration in the Los Angeles Basin

    E-Print Network [OSTI]

    Kurapov, Alexander

    Using Vertical Rock Uplift Patterns to Constrain the Three-Dimensional Fault Configuration of geologic uplift patterns with results of three-dimensional mechanical models provides constraints in the northern Los Angeles basin, California. The modeled uplift matches well the geologic pattern of uplift as

  19. Evaluation of the location and recency of faulting near prospective surface facilities in Midway Valley, Nye County, Nevada

    SciTech Connect (OSTI)

    Swan, F.H.; Wesling, J.R.; Angell, M.M.; Thomas, A.P.; Whitney, J.W.; Gibson, J.D.

    2002-01-17

    Evaluation of surface faulting that may pose a hazard to prospective surface facilities is an important element of the tectonic studies for the potential Yucca Mountain high-level radioactive waste repository in southwestern Nevada. For this purpose, a program of detailed geologic mapping and trenching was done to obtain surface and near-surface geologic data that are essential for determining the location and recency of faults at a prospective surface-facilities site located east of Exile Hill in Midway Valley, near the eastern base of Yucca Mountain. The dominant tectonic features in the Midway Valley area are the north- to northeast-trending, west-dipping normal faults that bound the Midway Valley structural block-the Bow Ridge fault on the west side of Exile Hill and the Paint-brush Canyon fault on the east side of the valley. Trenching of Quaternary sediments has exposed evidence of displacements, which demonstrate that these block-bounding faults repeatedly ruptured the surface during the middle to late Quaternary. Geologic mapping, subsurface borehole and geophysical data, and the results of trenching activities indicate the presence of north- to northeast-trending faults and northwest-trending faults in Tertiary volcanic rocks beneath alluvial and colluvial sediments near the prospective surface-facilities site. North to northeast-trending faults include the Exile Hill fault along the eastern base of Exile Hill and faults to the east beneath the surficial deposits of Midway Valley. These faults have no geomorphic expression, but two north- to northeast-trending zones of fractures exposed in excavated profiles of middle to late Pleistocene deposits at the prospective surface-facilities site appear to be associated with these faults. Northwest-trending faults include the West Portal and East Portal faults, but no disruption of Quaternary deposits by these faults is evident. The western zone of fractures is associated with the Exile Hill fault. The eastern zone of fractures is within Quaternary alluvial sediments, but no bedrock was encountered in trenches and soil pits in this part of the prospective surface facilities site; thus, the direct association of this zone with one or more bedrock faults is uncertain. No displacement of lithologic contacts and soil horizons could be detected in the fractured Quaternary deposits. The results of these investigations imply the absence of any appreciable late Quaternary faulting activity at the prospective surface-facilities site.

  20. Development of Hydrologic Characterization Technology of Fault Zones -- Phase I, 2nd Report

    SciTech Connect (OSTI)

    Karasaki, Kenzi; Onishi, Tiemi; Black, Bill; Biraud, Sebastien

    2009-03-31

    This is the year-end report of the 2nd year of the NUMO-LBNL collaborative project: Development of Hydrologic Characterization Technology of Fault Zones under NUMO-DOE/LBNL collaboration agreement, the task description of which can be found in the Appendix 3. Literature survey of published information on the relationship between geologic and hydrologic characteristics of faults was conducted. The survey concluded that it may be possible to classify faults by indicators based on various geometric and geologic attributes that may indirectly relate to the hydrologic property of faults. Analysis of existing information on the Wildcat Fault and its surrounding geology was performed. The Wildcat Fault is thought to be a strike-slip fault with a thrust component that runs along the eastern boundary of the Lawrence Berkeley National Laboratory. It is believed to be part of the Hayward Fault system but is considered inactive. Three trenches were excavated at carefully selected locations mainly based on the information from the past investigative work inside the LBNL property. At least one fault was encountered in all three trenches. Detailed trench mapping was conducted by CRIEPI (Central Research Institute for Electric Power Industries) and LBNL scientists. Some intriguing and puzzling discoveries were made that may contradict with the published work in the past. Predictions are made regarding the hydrologic property of the Wildcat Fault based on the analysis of fault structure. Preliminary conceptual models of the Wildcat Fault were proposed. The Wildcat Fault appears to have multiple splays and some low angled faults may be part of the flower structure. In parallel, surface geophysical investigations were conducted using electrical resistivity survey and seismic reflection profiling along three lines on the north and south of the LBNL site. Because of the steep terrain, it was difficult to find optimum locations for survey lines as it is desirable for them to be as straight as possible. One interpretation suggests that the Wildcat Fault is westerly dipping. This could imply that the Wildcat Fault may merge with the Hayward Fault at depth. However, due to the complex geology of the Berkeley Hills, multiple interpretations of the geophysical surveys are possible. iv An effort to construct a 3D GIS model is under way. The model will be used not so much for visualization of the existing data because only surface data are available thus far, but to conduct investigation of possible abutment relations of the buried formations offset by the fault. A 3D model would be useful to conduct 'what if' scenario testing to aid the selection of borehole drilling locations and configurations. Based on the information available thus far, a preliminary plan for borehole drilling is outlined. The basic strategy is to first drill boreholes on both sides of the fault without penetrating it. Borehole tests will be conducted in these boreholes to estimate the property of the fault. Possibly a slanted borehole will be drilled later to intersect the fault to confirm the findings from the boreholes that do not intersect the fault. Finally, the lessons learned from conducting the trenching and geophysical surveys are listed. It is believed that these lessons will be invaluable information for NUMO when it conducts preliminary investigations at yet-to-be selected candidate sites in Japan.

  1. Characteristics of displacement transfer zones associated with thrust faults / by Arthur Francis Xavier O'Keefe 

    E-Print Network [OSTI]

    O'Keefe, Arthur Francis Xavier

    1980-01-01

    CHARAC 'ERZSTZCS OF DZSPLACENENT TRANSFER 'ZONES ASSOCIATED WI H THRUST FAULTS A Thesis by ARTHUR FRANCIS XAVIER O&HEEFE Submitted to the Graduate College of Texas AlkM University in partial fulfillment of the requirement for the degree... of NASTER OF SCIENCE August 1990 Idaho or Subrent: Geology CHARACTERISTICS QF DISPLACEMENT TRANSFER ZONES ASSOCIATED NITS THRUST FAULTS A Thesis by ARTHUR FRANCIS XAVIER 0 'KEEFE Approved ss to style and content by: (Co-chairman of' Commi. tee...

  2. The detection of high impedance faults using random fault behavior 

    E-Print Network [OSTI]

    Carswell, Patrick Wayne

    1988-01-01

    and cleared by conventional overcurrent devices. Examples of high impedance fault scenarios include broken conductors and grounded conductors as is the case with tree faults. Most high impedance fault situations occur on the power distribution system due... of the most promising proposals are presented and commented upon as to their weaknesses and limitations if implemented on an actual power distribution system. A new algorithm is developed which attempts to detect the presence of a high impedance fault...

  3. Dominant Pathways in Protein Folding

    E-Print Network [OSTI]

    P. Faccioli; M. Sega; F. Pederiva; H. Orland

    2006-07-27

    We present a method to investigate the kinetics of protein folding on a long time-scale and the dynamics underlying the formation of secondary and tertiary structures during the entire reaction. The approach is based on the formal analogy between thermal and quantum diffusion: by writing the solution of the Fokker-Planck equation for the time-evolution of a protein in a viscous heat-bath in terms of a path integral, we derive a Hamilton-Jacobi variational principle from which we are able to compute the most probable pathway of folding. The method is applied to the folding of the Villin Headpiece Subdomain, in the framework of a Go-model. We have found that, in this model, the transition occurs through an initial collapsing phase driven by the starting coil configuration and a later rearrangement phase, in which secondary structures are formed and all computed paths display strong similarities. This method is completely general, does not require the prior knowledge of any reaction coordinate and represents an efficient tool to perfom ab-initio simulations of the entire folding process with available computers.

  4. Simultaneous Alignment and Folding of Protein Sequences

    E-Print Network [OSTI]

    Devadas, Srinivas

    Simultaneous Alignment and Folding of Protein Sequences J´er^ome Waldisp¨uhl1,2 , Charles W. O techniques are widely applicable to many more protein families. partiFold-Align is available at http://partiFold.csail.mit.edu. 1 Introduction The consensus fold of two proteins is their common minimum energy structure, given

  5. Disulfide-Linked Protein Folding Pathways

    E-Print Network [OSTI]

    Bardwell, James

    Disulfide-Linked Protein Folding Pathways Bharath S. Mamathambika1,3 and James C. Bardwell2,3, 1 of protein folding is difficult because it involves the identification and characterization of folding to protein folding in vitro and in vivo. 211 Click here for quick links to Annual Reviews content online

  6. ACCEPTED MANUSCRIPT Fold interaction and wavelength selection

    E-Print Network [OSTI]

    Kaus, Boris

    with the Fars region of the Zagros fold-and-thrust belt including a large range of fold aspect ratio, such as the Makran, appear to be dominated by thrusting, whereas others such as the Simply Folded Belt at Zagros is active which amplifies sufficiently fast. In the Zagros Simply Folded Belt, they argued that weak

  7. Fault tolerant linear actuator

    DOE Patents [OSTI]

    Tesar, Delbert

    2004-09-14

    In varying embodiments, the fault tolerant linear actuator of the present invention is a new and improved linear actuator with fault tolerance and positional control that may incorporate velocity summing, force summing, or a combination of the two. In one embodiment, the invention offers a velocity summing arrangement with a differential gear between two prime movers driving a cage, which then drives a linear spindle screw transmission. Other embodiments feature two prime movers driving separate linear spindle screw transmissions, one internal and one external, in a totally concentric and compact integrated module.

  8. Computer hardware fault administration

    DOE Patents [OSTI]

    Archer, Charles J. (Rochester, MN); Megerian, Mark G. (Rochester, MN); Ratterman, Joseph D. (Rochester, MN); Smith, Brian E. (Rochester, MN)

    2010-09-14

    Computer hardware fault administration carried out in a parallel computer, where the parallel computer includes a plurality of compute nodes. The compute nodes are coupled for data communications by at least two independent data communications networks, where each data communications network includes data communications links connected to the compute nodes. Typical embodiments carry out hardware fault administration by identifying a location of a defective link in the first data communications network of the parallel computer and routing communications data around the defective link through the second data communications network of the parallel computer.

  9. GEOLOGY 619 ADVANCED PETROLEUM GEOLOGY Wayne M. Ahr, Professor, CPG

    E-Print Network [OSTI]

    GEOLOGY 619 ­ ADVANCED PETROLEUM GEOLOGY Wayne M. Ahr, Professor, CPG Draft v.1 ­ October, 2008 Advanced Petroleum Geology is designed for graduate students in geology, geophysics, and engineering. This course differs from Geology 404 ­ Petroleum Geology ­ by its more rigorous treatment of subject matter

  10. Geologic Maps and Structures Name ______________________________ Geology 100 Harbor section

    E-Print Network [OSTI]

    Harbor, David

    Geologic Maps and Structures Name ______________________________ Geology 100 ­ Harbor section The objectives of this lab are for you to learn the basic geologic structures in 3-D and to develop some facility in interpreting the nature of geologic structures from geologic maps and geologic cross sections. A big part

  11. BRIGHAM YOUNG UNIVERSITY GEOLOGY STUDIES

    E-Print Network [OSTI]

    Seamons, Kent E.

    #12;BRIGHAM YOUNG UNIVERSITY GEOLOGY STUDIES Volume 33, Part 1 CONTENTS Tertiary Geologic History Geology of the Deadman Canyon 7112-Minute Quadrangle, Carbon County, Utah, Utah. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .James Douglas Smith 135 Geology

  12. Polymer Uncrossing and Knotting in Protein Folding, and Their Role in Minimal Folding Pathways

    E-Print Network [OSTI]

    Plotkin, Steven S.

    Polymer Uncrossing and Knotting in Protein Folding, and Their Role in Minimal Folding Pathways Ali induce dominant pathway mechanisms in protein folding. Citation: Mohazab AR, Plotkin SS (2013) Polymer Uncrossing and Knotting in Protein Folding, and Their Role in Minimal Folding Pathways. PLoS ONE 8(1): e53642

  13. Protein folding using contact maps

    E-Print Network [OSTI]

    Michele Vendruscolo; Eytan Domany

    1999-01-21

    We present the development of the idea to use dynamics in the space of contact maps as a computational approach to the protein folding problem. We first introduce two important technical ingredients, the reconstruction of a three dimensional conformation from a contact map and the Monte Carlo dynamics in contact map space. We then discuss two approximations to the free energy of the contact maps and a method to derive energy parameters based on perceptron learning. Finally we present results, first for predictions based on threading and then for energy minimization of crambin and of a set of 6 immunoglobulins. The main result is that we proved that the two simple approximations we studied for the free energy are not suitable for protein folding. Perspectives are discussed in the last section.

  14. Early Cretaceous suturing of the Alisitos volcanic arc to North America and the role of the Ancestral Agua Blanca Fault in the Western Peninsular Ranges of Baja

    E-Print Network [OSTI]

    Wetmore, Paul H.

    of the Ancestral Agua Blanca Fault in the Western Peninsular Ranges of Baja California, Mexico Helge Alsleben1 California. A dramatic break in the geology between these two arcs occurs across the ancestral Agua Blanca oblique shear zone, located ~2 km south of the active Agua Blanca fault. The aABF lies within a coeval

  15. Significance of recurrent fault movement at Grays Point quarry, southeast Missouri

    SciTech Connect (OSTI)

    Diehl, S.F.; Throckmorton, C.K. ); Clendenin, C.W. )

    1993-03-01

    Geologic relationships indicate recurrent movement on a fault exposed at Grays Point, MO. Faulting offsets Middle-Late Ordovician Plattin Group, Decorah Group, Kimmswick Limestone, and Maquoketa Group strata. In plan, the fault is characterized by a relatively narrow zone (30--70 m) of northeast-striking fault slices associated with a northwest-striking zone of right-stepping en echelon fractures. This systematic fracture-fault array identifies right-lateral strike-slip movement. A vertically offset basal Decorah Group contact shows 22 m of down-to-the-southeast dip slip, which indicates a component of oblique slip. Oldest recognizable movement on the fault is evidenced by Maquoketa Group strata that fill a northeast-striking, wedge-shaped synform. Post-Ordovician movement along an adjacent subvertical fault displaces part of this synform 300 m right laterally. In thin section, the northwest-striking fracture set shows a polyphase history of deformation indicated by cataclastic textures and intrusion of carbonate-rich fluids. Three periods of movement occurred: (1) initial fracturing sealed by authigenic mineral cements; (2) renewed fracturing associated with recrystallization of sub-rounded clasts; and (3) subsequent brecciation marked by angular clasts and filling of fractures and vugs. Each successive fluid intrusion is characterized by an increase in grain size of the authigenic cement. The fault is subparallel to the regional, northeast-striking English Hill fault system. Polyphase oblique-slip deformation suggests that the fault, like others in southeastern Missouri, is a reactivated Late Proterozoic-Cambrian zone of weakness. Initial fault reactivation occurred during Middle-Late Ordovician as opposed to Devonian, as commonly interpreted for southeast Missouri. Multiple authigenic mineral cements imply that fluids may have been an important factor influencing the fault's tendency to be reactivated.

  16. Folding pathway of a lattice model for protein folding Vijay S. Pande1

    E-Print Network [OSTI]

    Croquette, Vincent

    Folding pathway of a lattice model for protein folding Vijay S. Pande1 and Daniel S. Rokhsar1 principles that describe protein folding, then one might expect them to apply to simplified models

  17. Investigating Protein Folding and Function by Manipulating Rare and Partially-Folded Conformations

    E-Print Network [OSTI]

    Horner, Geoffrey Ashworth

    2010-01-01

    Are there pathways for protein folding. J Chim Phys, 1968.p. Dobson, C.M. , Protein folding and misfolding. Nature,Bai, Y. , et al. , Protein folding intermediates: native-

  18. Investigating Protein Folding and Function by Manipulating Rare and Partially-Folded Conformations

    E-Print Network [OSTI]

    Horner, Geoffrey Ashworth

    2010-01-01

    Z. Zhou, and Y. Bai, A protein folding pathway with multipleintermediate state in protein folding by a hydrophobicAre there pathways for protein folding. J Chim Phys, 1968.

  19. The Influence of fold and fracture development on reservoir behavior of the Lisburne Group of northern Alaska

    SciTech Connect (OSTI)

    Wesley K. Wallace; Catherine L. Hanks; Jerry Jensen: Michael T. Whalen; Paul Atkinson; Joseph Brinton; Thang Bui; Margarete Jadamec; Alexandre Karpov; John Lorenz; Michelle M. McGee; T.M. Parris; Ryan Shackleton

    2004-07-01

    The Carboniferous Lisburne Group is a major carbonate reservoir unit in northern Alaska. The Lisburne is folded and thrust faulted where it is exposed throughout the Brooks Range, but is relatively undeformed in areas of current production in the subsurface of the North Slope. The objectives of this study were to develop a better understanding of four major aspects of the Lisburne: (1) The geometry and kinematics of folds and their truncation by thrust faults. (2) The influence of folding on fracture patterns. (3) The influence of deformation on fluid flow. (4) Lithostratigraphy and its influence on folding, faulting, fracturing, and reservoir characteristics. Symmetrical detachment folds characterize the Lisburne in the northeastern Brooks Range. In contrast, Lisburne in the main axis of the Brooks Range is deformed into imbricate thrust sheets with asymmetrical hangingwall anticlines and footwall synclines. The Continental Divide thrust front separates these different structural styles in the Lisburne and also marks the southern boundary of the northeastern Brooks Range. Field studies were conducted for this project during 1999 to 2001 in various locations in the northeastern Brooks Range and in the vicinity of Porcupine Lake, immediately south of the Continental Divide thrust front. Results are summarized below for the four main subject areas of the study.

  20. Simultaneous alignment and folding of protein sequences

    E-Print Network [OSTI]

    Waldispuhl, Jerome

    Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding problems. We presentpartiFold-Align, the first ...

  1. Topology to geometry in protein folding: -Lactoglobulin

    E-Print Network [OSTI]

    Berry, R. Stephen

    Topology to geometry in protein folding: -Lactoglobulin Ariel Ferna´ndez* , Andre´s Colubri , and R angles and at the -carbon atoms of the peptide backbone dominate protein folding. Next in importance

  2. Introduzione alle Proteine e al Protein Folding

    E-Print Network [OSTI]

    Giannozzi, Paolo

    Chapter 4 Introduzione alle Proteine e al Protein Folding 4.1 Proteine: propriet`a strutturali Le protein folding `e il cosiddetto modello HP, nel quale a ogni amino acido `e assegnata l'etichetta di

  3. Geologic Map and Cross Sections of the McGinness Hills Geothermal Area - GIS Data

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Faulds, James E.

    2013-12-31

    Geologic map data in shapefile format that includes faults, unit contacts, unit polygons, attitudes of strata and faults, and surficial geothermal features. 5 cross?sections in Adobe Illustrator format. Comprehensive catalogue of drill?hole data in spreadsheet, shapefile, and Geosoft database formats. Includes XYZ locations of well heads, year drilled, type of well, operator, total depths, well path data (deviations), lithology logs, and temperature data. 3D model constructed with EarthVision using geologic map data, cross?sections, drill?hole data, and geophysics.

  4. Geologic Map and Cross Sections of the McGinness Hills Geothermal Area - GIS Data

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Faulds, James E.

    Geologic map data in shapefile format that includes faults, unit contacts, unit polygons, attitudes of strata and faults, and surficial geothermal features. 5 cross?sections in Adobe Illustrator format. Comprehensive catalogue of drill?hole data in spreadsheet, shapefile, and Geosoft database formats. Includes XYZ locations of well heads, year drilled, type of well, operator, total depths, well path data (deviations), lithology logs, and temperature data. 3D model constructed with EarthVision using geologic map data, cross?sections, drill?hole data, and geophysics.

  5. Shallow structure from a seismic reflection profile across the Borah Peak, Idaho, fault scarp

    E-Print Network [OSTI]

    Miller, Richard D.; Steeples, Don W.

    1986-09-01

    A short 12-fold CDP seismic-reflection survey was performed along the road to Doublespring Pass across the fault scarp formed by the October 28, 1983, magnitude-7.3, Idaho earthquake. This high-resolution reflection survey was conducted to determine...

  6. Evaluating the Effectiveness of Fault Tolerance in Replicated Database Management Systems

    E-Print Network [OSTI]

    -Olaf.Hvasshovd@idi.ntnu.no Abstract Database management systems (DBMS) achieve high availabilityand faulttolerance usuallyby of this study is two-fold. It eval- uates the effectiveness of DBMS fault tolerance in the pres- ence on database integrity, performance, and availability on a replicated DBMS, ClustRa[6], in the presence

  7. Structural geology of the Henneberry Ridge area, Beaverhead County, Montana 

    E-Print Network [OSTI]

    Coryell, Jeffrey John

    1983-01-01

    of Advisory Committee: Dr. John H. Spang The advancement of a thrust system toward the craton can occasionally result in a "mixing" of foreland and thrust belt styles of deformation due to the large displacement on the thrusts. Structures associated... periods. Fig. 5--Location of Rocky Moutain Foreland and easternmast extent of Frontal Fold and Thrust Belt. . . . . . . . , . . . . . 29 Fig. 6--Photographs showing major faults in study area. . . . . Fig. 7--Block diagram of a window into a duplex...

  8. Environmental Geology Major www.geology.pitt.edu/uprogs.html

    E-Print Network [OSTI]

    Jiang, Huiqiang

    Environmental Geology Major www.geology.pitt.edu/uprogs.html Revised: 04/2004 Environmental geology in environmental geology provides the diverse skills required to work in many different employment settings issues. Within the field of geology, environmental and geotechnical jobs exist for people with BS degrees

  9. Department of Geology and Geological Engineering University of Mississippi Announces

    E-Print Network [OSTI]

    Elsherbeni, Atef Z.

    Department of Geology and Geological Engineering University of Mississippi Announces Krista Pursuing a degree within the Geology & Geological Engineering department Record of financial need the University of Mississippi with a Bachelor of Science degree in geological engineering in 1982. After earning

  10. Geologic Maps and Structures Name ______________________________ Geology 100 Harbor section

    E-Print Network [OSTI]

    Harbor, David

    Geologic Maps and Structures Name ______________________________ Geology 100 ­ Harbor section Read Ch. 7 before you begin. The objectives of this lab are for you to learn the basic geologic structures in 3-D and to develop some facility in interpreting the nature of geologic structures from geologic

  11. Simultaneous Alignment and Folding of Protein Sequences

    E-Print Network [OSTI]

    Will, Sebastian

    Simultaneous Alignment and Folding of Protein Sequences J´er^ome Waldisp¨uhl1,2 , Charles W. O-homology proteins. In this work, we present partiFold-Align, the first algorithm for simultaneous alignment and consensus folding of unaligned protein sequences; the algorithm's complexity is poly- nomial in time

  12. UNCORRECTED 3 Protein folding: Then and now

    E-Print Network [OSTI]

    Dokholyan, Nikolay V.

    UNCORRECTED PROOF 1 2 Review 3 Protein folding: Then and now 4 Yiwen Chen 1 , Feng Ding 1 , Huifen 8 9 Abstract 10 Over the past three decades the protein folding field has undergone monumental changes. Originally a purely academic question, how 11 a protein folds has now become vital

  13. 272 Dispatch Protein folding: Chaperones get Hip

    E-Print Network [OSTI]

    Craig, Elizabeth A

    272 Dispatch Protein folding: Chaperones get Hip Thomas Ziegelhoffer, Jill L. Johnson and Elizabeth the complexity of the Hsp70 `chaperone machine' that mediates early steps of protein folding in cells. Address of protein folding and translocation through their ability to recognize non-native conformations of proteins

  14. Approximate Inference and Protein-Folding

    E-Print Network [OSTI]

    Weiss, Yair

    Approximate Inference and Protein-Folding Chen Yanover and Yair Weiss School of Computer Science Side-chain prediction is an important subtask in the protein-folding problem. We show that #12;nding algorithms, including a widely used protein-folding software (SCWRL). 1 Introduction Inference in graphical

  15. Atomistic Protein Folding Simulations on the

    E-Print Network [OSTI]

    Zhigilei, Leonid V.

    Atomistic Protein Folding Simulations on the Submillisecond Time Scale Using Worldwide Distributed Abstract: Atomistic simulations of protein folding have the potential to be a great complement. Biopolymers 68: 91­109, 2003 Keywords: atomistic protein folding; microsecond time scale; computer hardware

  16. EXPLORING PROTEIN FOLDING TRAJECTORIES USING GEOMETRIC SPANNERS

    E-Print Network [OSTI]

    Guibas, Leonidas J.

    EXPLORING PROTEIN FOLDING TRAJECTORIES USING GEOMETRIC SPANNERS D. RUSSEL and L. GUIBAS Computer of secondary and tertiary structures as the protein folds. 1 Introduction There has been extensive work understanding of protein folding by studying their ensemble behaviors. Most currently used methods

  17. Protein folding: not just another optimization

    E-Print Network [OSTI]

    Karplus, Kevin

    Protein folding: not just another optimization problem Kevin Karplus karplus of California, Santa Cruz protein-folding: not just opt ­ p.1/68 #12;Outline of Talk What is Bioinformatics initio" methods Contact prediction protein-folding: not just opt ­ p.2/68 #12;What is Bioinformatics

  18. Protein-Folding Dynamics: Overview of Molecular

    E-Print Network [OSTI]

    Zhigilei, Leonid V.

    Protein-Folding Dynamics: Overview of Molecular Simulation Techniques Harold A. Scheraga, Mey folding in silico. Although just a few years ago the dynamic be- havior of a protein molecule could models of proteins now make it possible to study protein- folding pathways from completely unfolded

  19. Stress and fault rock controls on fault zone hydrology, Coso...

    Open Energy Info (EERE)

    fault zone hydrology, Coso geothermal field, CA Abstract In crystalline rock of the Coso Geothermal Field, CA, fractures are the primary source of permeability. At reservoir...

  20. Interseismic Strain Localization in the San Jacinto Fault Zone ERIC O. LINDSEY,1

    E-Print Network [OSTI]

    Fialko, Yuri

    . SAHAKIAN,1 YURI FIALKO,1 YEHUDA BOCK,1 SYLVAIN BARBOT,2 and THOMAS K. ROCKWELL 3 Abstract--We investigate the past 120 years. The fault segment near Anza has not ruptured for more than 200 years (ROCKWELL et al geologic, geodetic, and seismic studies (ROCKWELL et al. 1990; LISOWSKI et al. 1991; ALLAM and BEN

  1. The Missing Sinks: Slip Localization in Faults, Damage Zones, and the Seismic Energy Budget

    E-Print Network [OSTI]

    Abercrombie, Rachel E.

    remain relatively thin for all sizes of rupture. Any energy consumed by dissipative processes? There must be a suite of geological pro- cesses that consume the bulk of this energy. Seismologists commonly217 The Missing Sinks: Slip Localization in Faults, Damage Zones, and the Seismic Energy Budget Zoe

  2. Fault interaction near Hollister, California

    SciTech Connect (OSTI)

    Mavko, G.M.

    1982-09-10

    A numerical model is used to study fault stress slip near Hollister, California. The geometrically complex system of interacting faults, including the San Andreas, Calaveras, Sargent, and Busch faults, is approximated with a two-dimensional distribution of short planar fault segments in an elastic medium. The steady stress and slip rate are simulated by specifying frictional strength and stepping the remote stress ahead in time. The resulting computed fault stress is roughly proportional to the observed spatial density of small earthquakes, suggesting that the distinction between segments characterized by earthquakes and those with aseismic creep results, in part, from geometry. A nonsteady simulation is made by introducing, in addition, stress drops for individual moderate earthquakes. A close fit of observed creep with calculated slip on the Calaveras and San Andreas faults suggests that many changes in creep rate (averaged over several months) are caused by local moderate earthquakes. In particular, a 3-year creep lag preceding the August 6, 1979, Coyote Lake earthquake on the Calaveras fault seems to have been a direct result of the November 28, 1974, Thanksgiving Day earthquake on the Busch fault. Computed lags in slip rate preceding some other moderate earthquakes in the area are also due to earlier earthquakes. Although the response of the upper 1 km of the fault zone may cause some individual creep events and introduce delays in others, the long-term rate appears to reflect deep slip.

  3. Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native Structures*

    E-Print Network [OSTI]

    Istrail, Sorin

    Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known technique to study protein folding pathways of several small proteins and obtained encouraging results. In this pa- per, we describe how our motion planning framework can be used to study protein folding kinetics

  4. Protein Folding Trajectories Analysis: Summarization, Event Detection and Consensus Partial Folding Pathway

    E-Print Network [OSTI]

    Yang, Hui

    Protein Folding Trajectories Analysis: Summarization, Event Detection and Consensus Partial Folding in protein folding trajectories. We pro- pose an approach that employs the simplicity of contact maps and po- tentially cure diseases caused by misfolding. The protein folding problem is therefore one

  5. Computational investigations of folded self-avoiding walks related to protein folding

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Computational investigations of folded self-avoiding walks related to protein folding Jacques M, protein folding, protein structure prediction 1. Introduction Self-avoiding walks (SAWs) have been studied, 9], authors of this manuscript have investigated some dynamic protein folding models. They have

  6. A review of recent advances in ab initio protein folding by the Folding@home project

    E-Print Network [OSTI]

    A review of recent advances in ab initio protein folding by the Folding@home project William Ito molecular simulations of protein folding. Thanks to engineering innovations like a Graphical Processing Unit power, allowing it to simulate longer and more complex protein folding mechanisms than ever before

  7. REMOTE SENSING GEOLOGICAL SURVEY

    E-Print Network [OSTI]

    sensing data used in CPRM geologic projects Future perspective: the Spectral Library of Geological Survey Pesquisa de Recursos Minerais (CPRM) is a state-owned company that carries out the functions of Brazil ­ CPRM #12;Examples of use of LANDSAT imagery in CPRM projects Field works planning ­ Enhancement

  8. Topological Solitons and Folded Proteins

    E-Print Network [OSTI]

    M. N. Chernodub; Shuangwei Hu; Antti J. Niemi

    2010-03-23

    We propose that protein loops can be interpreted as topological domain-wall solitons. They interpolate between ground states that are the secondary structures like alpha-helices and beta-strands. Entire proteins can then be folded simply by assembling the solitons together, one after another. We present a simple theoretical model that realizes our proposal and apply it to a number of biologically active proteins including 1VII, 2RB8, 3EBX (Protein Data Bank codes). In all the examples that we have considered we are able to construct solitons that reproduce secondary structural motifs such as alpha-helix-loop-alpha-helix and beta-sheet-loop-beta-sheet with an overall root-mean-square-distance accuracy of around 0.7 Angstrom or less for the central alpha-carbons, i.e. within the limits of current experimental accuracy.

  9. Fault current limiter

    DOE Patents [OSTI]

    Darmann, Francis Anthony

    2013-10-08

    A fault current limiter (FCL) includes a series of high permeability posts for collectively define a core for the FCL. A DC coil, for the purposes of saturating a portion of the high permeability posts, surrounds the complete structure outside of an enclosure in the form of a vessel. The vessel contains a dielectric insulation medium. AC coils, for transporting AC current, are wound on insulating formers and electrically interconnected to each other in a manner such that the senses of the magnetic field produced by each AC coil in the corresponding high permeability core are opposing. There are insulation barriers between phases to improve dielectric withstand properties of the dielectric medium.

  10. Fault Current Limiters

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on Delicious Rank EERE:FinancingPetroleum12, 2015Executive Order14, 20111,FYDepartment of5 NovemberFarms to FuelFault

  11. GEOLOGY & GEOPHYSICS 2014-2015

    E-Print Network [OSTI]

    Bermúdez, José Luis

    GEOLOGY & GEOPHYSICS 2014-2015 Graduate Student Handbook - 1 · Geology & Geophysics Core Values - 2 · A Message from the Graduate Advisor - 3 · Department Organizations - 60 · Departmental Executive Committee - 61 · Geology& Geophysics Development Advisory Council

  12. Protein-Folding Landscapes in Multi-Chain Systems

    E-Print Network [OSTI]

    Cellmer, Troy; Bratko, Dusan; Prausnitz, John M.; Blanch, Harvey

    2005-01-01

    a common approach to studying protein folding in isolationto investigate protein folding in the presence of multipleProtein-Folding Landscapes in Multi-Chain Systems Major

  13. On the rough folding landscape of green fluorescent protein

    E-Print Network [OSTI]

    Andrews, Benjamin Thomas

    2008-01-01

    W. A. (2004). The protein folding 'speed limit'. CurrentG. (1997). Theory of protein folding: the energy landscapeenergy landscape of protein folding: a synthesis. Proteins

  14. Protein-folding via divide-and-conquer optimization

    E-Print Network [OSTI]

    Oliva, Ricardo; Crivelli, Silvia; Meza, Juan

    2004-01-01

    Protein-folding vianumerical optimization Protein folding via divide-and-premise brings the protein-folding problem into the realm of

  15. Extending the theoretical framework of protein folding dynamics

    E-Print Network [OSTI]

    Yang, Sichun

    2006-01-01

    Stochastic Dynamics on a Protein Folding Energy Landscape .and J. N. Onuchic. Protein folding funnels: kinetic pathwaysthe energy landscape of protein folding. Proteins: Struct.

  16. Elucidating amyloid ?-protein folding and assembly: A multidisciplinary approach

    E-Print Network [OSTI]

    2006-01-01

    dynamics approach to protein folding and aggregation.study of amyloid ?-protein folding and oligomerization.nucleation of amyloid ?-protein folding. Proc. Natl. Acad.

  17. Folding amphipathic helices into membranes: Amphiphilicity trumps hydrophobicity

    E-Print Network [OSTI]

    Fernández-Vidal, Mónica; Jayasinghe, Sajith; Ladokhin, Alexey S; White, Stephen H

    2007-01-01

    C. (1999). Membrane protein folding and stability: PhysicalA. S. & Hristova, K. (1998). Protein folding in membranes:Mutational analysis of protein folding and stability. In

  18. On the rough folding landscape of green fluorescent protein

    E-Print Network [OSTI]

    Andrews, Benjamin Thomas

    2008-01-01

    H. (2008). Understanding protein folding: small proteins inmultiple pathways of protein folding. Chem Biol 2, 255-60.Polymer principles and protein folding. Protein Sci 8, 1166-

  19. Intermediates and the folding of proteins L and G

    E-Print Network [OSTI]

    Brown, Scott; Head-Gordon, Teresa

    2008-01-01

    unifying mechanism for protein folding? [Review]. Trends incoordinate for protein folding. Journal of Chemical PhysicsIntermediates can accelerate protein folding. Proceedings of

  20. Extending the theoretical framework of protein folding dynamics

    E-Print Network [OSTI]

    Yang, Sichun

    2006-01-01

    Stochastic Dynamics on a Protein Folding Energy Landscape .and J. N. Onuchic. Protein folding funnels: kinetic pathwaysand T. Head-Gordon. Protein folding by distributed computing

  1. Chapter 14 Geology and Soils

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    in bold and acronyms are defined in Chapter 32, Glossary and Acronyms. Chapter 14 Geology and Soils This chapter describes existing geological and soil conditions in the...

  2. Optimized Fault Location Final Project Report

    E-Print Network [OSTI]

    Optimized Fault Location Final Project Report Power Systems Engineering Research Center A National Engineering Research Center Optimized Fault Location Concurrent Technologies Corporation Final Project Report

  3. On Leakage from Geologic Storage Reservoirs of CO2

    SciTech Connect (OSTI)

    Pruess, Karsten

    2006-02-14

    Large amounts of CO2 would need to be injected underground to achieve a significant reduction of atmospheric emissions. The large areal extent expected for CO2 plumes makes it likely that caprock imperfections will be encountered, such as fault zones or fractures, which may allow some CO2 to escape from the primary storage reservoir. Leakage of CO2 could also occur along wellbores. Concerns with escape of CO2 from a primary geologic storage reservoir include (1) acidification of groundwater resources, (2) asphyxiation hazard when leaking CO2 is discharged at the land surface, (3) increase in atmospheric concentrations of CO2, and (4) damage from a high-energy, eruptive discharge (if such discharge is physically possible). In order to gain public acceptance for geologic storage as a viable technology for reducing atmospheric emissions of CO2, it is necessary to address these issues and demonstrate that CO2 can be injected and stored safely in geologic formations.

  4. Protein Vivisection Reveals Elusive Intermediates in Folding

    SciTech Connect (OSTI)

    Zheng, Zhongzhou; Sosnick, Tobin R. (UC)

    2010-05-25

    Although most folding intermediates escape detection, their characterization is crucial to the elucidation of folding mechanisms. Here, we outline a powerful strategy to populate partially unfolded intermediates: A buried aliphatic residue is substituted with a charged residue (e.g., Leu {yields} Glu{sup -}) to destabilize and unfold a specific region of the protein. We applied this strategy to ubiquitin, reversibly trapping a folding intermediate in which the {beta}5-strand is unfolded. The intermediate refolds to a native-like structure upon charge neutralization under mildly acidic conditions. Characterization of the trapped intermediate using NMR and hydrogen exchange methods identifies a second folding intermediate and reveals the order and free energies of the two major folding events on the native side of the rate-limiting step. This general strategy may be combined with other methods and have broad applications in the study of protein folding and other reactions that require trapping of high-energy states.

  5. Observer-based fault detection for nuclear reactors

    E-Print Network [OSTI]

    Li, Qing, 1972-

    2001-01-01

    This is a study of fault detection for nuclear reactor systems. Basic concepts are derived from fundamental theories on system observers. Different types of fault- actuator fault, sensor fault, and system dynamics fault ...

  6. BS in GEOLOGY (694022) MAP Sheet Department of Geological Sciences

    E-Print Network [OSTI]

    Seamons, Kent E.

    351 Mineralogy Geol 352 Petrology Geol 370 Sedimentology and Stratigraphy Geol 375 Structural Geology

  7. DMBC: Web Planning & Layouts Above the Fold

    E-Print Network [OSTI]

    Stowell, Michael

    DMBC: Web Planning & Layouts Above the Fold · Website width · Website Height · Important content · From an Image Web Layouts Photoshop · Canvas Size · Guide Lines · Shapes #12;· Text (Lorem Ipsum

  8. Arc fault detection system

    DOE Patents [OSTI]

    Jha, Kamal N. (Bethel Park, PA)

    1999-01-01

    An arc fault detection system for use on ungrounded or high-resistance-grounded power distribution systems is provided which can be retrofitted outside electrical switchboard circuits having limited space constraints. The system includes a differential current relay that senses a current differential between current flowing from secondary windings located in a current transformer coupled to a power supply side of a switchboard, and a total current induced in secondary windings coupled to a load side of the switchboard. When such a current differential is experienced, a current travels through a operating coil of the differential current relay, which in turn opens an upstream circuit breaker located between the switchboard and a power supply to remove the supply of power to the switchboard.

  9. Arc fault detection system

    DOE Patents [OSTI]

    Jha, K.N.

    1999-05-18

    An arc fault detection system for use on ungrounded or high-resistance-grounded power distribution systems is provided which can be retrofitted outside electrical switchboard circuits having limited space constraints. The system includes a differential current relay that senses a current differential between current flowing from secondary windings located in a current transformer coupled to a power supply side of a switchboard, and a total current induced in secondary windings coupled to a load side of the switchboard. When such a current differential is experienced, a current travels through a operating coil of the differential current relay, which in turn opens an upstream circuit breaker located between the switchboard and a power supply to remove the supply of power to the switchboard. 1 fig.

  10. 460:410--Field Geology COURSE INFORMATION

    E-Print Network [OSTI]

    sedimentology, stratigraphy, and structural geology. Students gain skills in geologic mapping on air: Structural Geology AND Stratigraphy or Sedimentary Geology; OR permission of instructors IV. Instructors 21 Aug Museum: Quiz; lectures and exercises on Fundy basin geology; stratigraphy & depositional

  11. Insights into fold growth using fold-related joint patterns and mechanical stratigraphy

    E-Print Network [OSTI]

    Savage, Heather M.

    Insights into fold growth using fold-related joint patterns and mechanical stratigraphy Heather M Available online 17 September 2010 Keywords: Sheep Mountain Anticline Joint pattern Mechanical stratigraphy, we integrate mechanical stratigraphy with joint pattern analysis to determine relative timing

  12. Hot Pot Detail - Evidence of Quaternary Faulting

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Lane, Michael

    2013-06-27

    Compilation of published data, field observations and photo interpretation relevant to Quaternary faulting at Hot Pot.

  13. Hot Pot Detail - Evidence of Quaternary Faulting

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Lane, Michael

    Compilation of published data, field observations and photo interpretation relevant to Quaternary faulting at Hot Pot.

  14. STATISTICAL ANALYSIS OF PROTEIN FOLDING KINETICS

    E-Print Network [OSTI]

    Dinner, Aaron

    STATISTICAL ANALYSIS OF PROTEIN FOLDING KINETICS AARON R. DINNER New Chemistry Laboratory for Protein Folding: Advances in Chemical Physics, Volume 120. Edited by Richard A. Friesner. Series Editors Experimental and theoretical studies have led to the emergence of a unified general mechanism for protein

  15. Thermodynamics of Protein Folding Erik Sandelin

    E-Print Network [OSTI]

    Sandelin, Erik

    Thermodynamics of Protein Folding and Design Erik Sandelin Department of Theoretical Physics Lund Sölvegatan 14A 223 62 LUND September 2000 Erik Sandelin Thermodynamics of Protein Folding and Design sequence-independent local interactions which are found to strongly influence the thermodynamics

  16. Control of folding by gravity and matrix thickness: Implications for large-scale folding

    E-Print Network [OSTI]

    Podladchikov, Yuri

    and the Zagros Mountains but does control folding in central Asia. Applicability conditions of viscous and thin

  17. Fan-fold shielded electrical leads

    DOE Patents [OSTI]

    Rohatgi, R.R.; Cowan, T.E.

    1996-06-11

    Disclosed are fan-folded electrical leads made from copper cladded Kapton, for example, with the copper cladding on one side serving as a ground plane and the copper cladding on the other side being etched to form the leads. The Kapton is fan folded with the leads located at the bottom of the fan-folds. Electrical connections are made by partially opening the folds of the fan and soldering, for example, the connections directly to the ground plane and/or the lead. The fan folded arrangement produces a number of advantages, such as electrically shielding the leads from the environment, is totally non-magnetic, and has a very low thermal conductivity, while being easy to fabricate. 3 figs.

  18. Cooperative Tertiary Interaction Network Guides RNA Folding

    SciTech Connect (OSTI)

    Behrouzi, Reza; Roh, Joon Ho; Kilburn, Duncan; Briber, R.M.; Woodson, Sarah A.

    2013-04-08

    Noncoding RNAs form unique 3D structures, which perform many regulatory functions. To understand how RNAs fold uniquely despite a small number of tertiary interaction motifs, we mutated the major tertiary interactions in a group I ribozyme by single-base substitutions. The resulting perturbations to the folding energy landscape were measured using SAXS, ribozyme activity, hydroxyl radical footprinting, and native PAGE. Double- and triple-mutant cycles show that most tertiary interactions have a small effect on the stability of the native state. Instead, the formation of core and peripheral structural motifs is cooperatively linked in near-native folding intermediates, and this cooperativity depends on the native helix orientation. The emergence of a cooperative interaction network at an early stage of folding suppresses nonnative structures and guides the search for the native state. We suggest that cooperativity in noncoding RNAs arose from natural selection of architectures conducive to forming a unique, stable fold.

  19. Fan-fold shielded electrical leads

    DOE Patents [OSTI]

    Rohatgi, Rajeev R. (Mountain View, CA); Cowan, Thomas E. (Livermore, CA)

    1996-01-01

    Fan-folded electrical leads made from copper cladded Kapton, for example, with the copper cladding on one side serving as a ground plane and the copper cladding on the other side being etched to form the leads. The Kapton is fan folded with the leads located at the bottom of the fan-folds. Electrical connections are made by partially opening the folds of the fan and soldering, for example, the connections directly to the ground plane and/or the lead. The fan folded arrangement produces a number of advantages, such as electrically shielding the leads from the environment, is totally non-magnetic, and has a very low thermal conductivity, while being easy to fabricate.

  20. BS in GEOLOGY: Environmental Geology Emphasis (694029) MAP Sheet Department of Geological Sciences

    E-Print Network [OSTI]

    Seamons, Kent E.

    Mineralogy Geol 352 Petrology Geol 370 Sedimentology and Stratigraphy Geol 375 Structural Geology Geol 410

  1. Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and

    E-Print Network [OSTI]

    Latombe, Jean-Claude

    Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics for studying protein folding kinetics. It uses the recently intro- duced Stochastic Roadmap Simulation (SRS validate the SRS method and indicate its potential as a general tool for studying protein folding kinetics

  2. Fault-tolerant TCP mechanisms 

    E-Print Network [OSTI]

    Satapati, Suresh Kumar

    2000-01-01

    While fault-tolerance is supported by a variety of critical services that can be accessed over the Internet, they are not robust in that they are oblivious of the impact of their tolerant mechanisms on the service they ...

  3. A fluvial record of active fault-propagation folding, Salsomaggiore anticline, northern Apennines, Italy

    E-Print Network [OSTI]

    Pazzaglia, Frank J.

    terraces [e.g., Rockwell et al., 1988; Molnar et al., 1994; Benedetti et al., 2000; Lave´ and Avouac, 2000

  4. Modeling the shortening history of a fault tip fold using structural and geomorphic records of deformation

    E-Print Network [OSTI]

    Avouac, Jean-Philippe

    [Rockwell et al., 1988; Lave´ and Avouac, 2000; Benedetti et al., 2000; Thompson et al., 2002]. At deeper

  5. Multiple folding pathways of proteins with shallow knots and co-translational folding

    E-Print Network [OSTI]

    Chwastyk, Mateusz

    2015-01-01

    We study the folding process in the shallowly knotted protein MJ0366 within two variants of a structure-based model. We observe that the resulting topological pathways are much richer than identified in previous studies. In addition to the single knot-loop events, we find novel, and dominant, two-loop mechanisms. We demonstrate that folding takes place in a range of temperatures and the conditions of most successful folding are at temperatures which are higher than those required for the fastest folding. We also demonstrate that nascent conditions are more favorable to knotting than off-ribosome folding.

  6. Model Components of the Certification Framework for Geologic Carbon Sequestration Risk Assessment

    SciTech Connect (OSTI)

    Oldenburg, Curtis M.; Bryant, Steven L.; Nicot, Jean-Philippe; Kumar, Navanit; Zhang, Yingqi; Jordan, Preston; Pan, Lehua; Granvold, Patrick; Chow, Fotini K.

    2009-06-01

    We have developed a framework for assessing the leakage risk of geologic carbon sequestration sites. This framework, known as the Certification Framework (CF), emphasizes wells and faults as the primary potential leakage conduits. Vulnerable resources are grouped into compartments, and impacts due to leakage are quantified by the leakage flux or concentrations that could potentially occur in compartments under various scenarios. The CF utilizes several model components to simulate leakage scenarios. One model component is a catalog of results of reservoir simulations that can be queried to estimate plume travel distances and times, rather than requiring CF users to run new reservoir simulations for each case. Other model components developed for the CF and described here include fault characterization using fault-population statistics; fault connection probability using fuzzy rules; well-flow modeling with a drift-flux model implemented in TOUGH2; and atmospheric dense-gas dispersion using a mesoscale weather prediction code.

  7. Internal structure of the Kern Canyon Fault, California: a deeply exhumed strike-slip fault 

    E-Print Network [OSTI]

    Neal, Leslie Ann

    2002-01-01

    Deformation and mineral alteration adjacent to a 2 km long segment of the Kern Canyon fault near Lake Isabella, California are studied to characterize the internal structure of the fault zone and to understand the development of fault structure...

  8. Protein Folding as a Physical Stochastic Process

    E-Print Network [OSTI]

    Kerson Huang

    2007-07-17

    We model protein folding as a physical stochastic process as follows. The unfolded protein chain is treated as a random coil described by SAW (self-avoiding walk). Folding is induced by hydrophobic forces and other interactions, such as hydrogen bonding, which can be taken into account by imposing conditions on SAW. The resulting model is termed CSAW (conditioned self-avoiding walk. Conceptually, the mathematical basis is a generalized Langevin equation. In practice, the model is implemented on a computer by combining SAW and Monte Carlo. To illustrate the flexibility and capabilities of the model, we consider a number of examples, including folding pathways, elastic properties, helix formation, and collective modes.

  9. Sandia Energy - PV Arc-Fault and Ground Fault Detection and Mitigation...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Program Home Stationary Power Energy Conversion Efficiency Solar Energy Photovoltaics PV Systems Reliability PV Arc-Fault and Ground Fault Detection and Mitigation Program PV...

  10. SMALL, GEOLOGICALLY COMPLEX RESERVOIRS CAN BENEFIT FROM RESERVOIR SIMULATION

    SciTech Connect (OSTI)

    Richard E. Bennett

    2002-06-24

    The Cascade Sand zone of the Mission-Visco Lease in the Cascade Oil field of Los Angeles County, California, has been under water flood since 1970. Increasing water injection to increase oil production rates was being considered as an opportunity to improve oil recovery. However, a secondary gas cap had formed in the up-dip portion of the reservoir with very low gas cap pressures, creating concern that oil could be displaced into the gas cap resulting in the loss of recoverable oil. Therefore, injecting gas into the gas cap to keep the gas cap pressurized and restrict the influx of oil during water injection was also being considered. Further, it was recognized that the reservoir geology in the gas cap area is very complex with numerous folding and faulting and thus there are potential pressure barriers in several locations throughout the reservoir. With these conditions in mind, there were concerns regarding well to well continuity in the gas cap, which could interfere with the intended repressurization impact. Concerns about the pattern of gas flow from well to well, the possibilities of cycling gas without the desired increased pressure, and the possible loss of oil displaced into the gas cap resulted in the decision to conduct a gas tracer survey in an attempt to better define inter-well communication. Following the gas tracer survey, a reservoir model would be developed to integrate the findings of the gas tracer survey, known geologic and reservoir data, and historic production data. The reservoir model would be used to better define the reservoir characteristics and provide information that could help optimize the waterflood-gas injection project under consideration for efficient water and gas injection management to increase oil production. However, due to inadequate gas sampling procedures in the field and insufficiently developed laboratory analytical techniques, the laboratory was unable to detect the tracer in the gas samples taken. At that point, focus on, and an expansion of the scope of the reservoir simulation and modeling effort was initiated, using DOE's BOAST98 (a visual, dynamic, interactive update of BOAST3), 3D, black oil reservoir simulation package as the basis for developing the reservoir model. Reservoir characterization, modeling, and reservoir simulation resulted in a significant change in the depletion strategy. Information from the reservoir characterization and modeling effort indicate that in-fill drilling and relying on natural water influx from the aquifer could increase remaining reserves by 125,000 barrels of oil per well, and that up to 10 infill wells could be drilled in the field. Through this scenario, field production could be increased two to three times over the current 65 bopd. Based on the results of the study, permits have been applied for to drill a directional infill well to encounter the productive zone at a high angle in order to maximize the amount of pay and reservoirs encountered.

  11. Pen Branch fault program: Consolidated report on the seismic reflection surveys and the shallow drilling

    SciTech Connect (OSTI)

    Stieve, A.L.; Stephenson, D.E.; Aadland, R.K.

    1991-03-23

    The Pen Branch fault was identified in the subsurface at the Savannah River Site (SRS) in 1989 based upon interpretation of earlier seismic reflection surveys and other geologic investigations (Seismorgraph Services Incorp., 1973; Chapman and DiStefano, 1989; Snipes, Fallaw and Price, 1989). A program was initiated at that time to determine the capability of the fault to release seismic energy (Price and others, 1989) as defined in the Nuclear Regulatory Commission regulatory guidelines, 10 CFR 100 Appendix A. This report presents the results of the Pen Branch fault investigation based on data acquired from seismic reflection surveys and shallow drilling across the fault completed at this time. The Earth Science Advisory Committee (ESAC) has reviewed the results of these investigations and unanimously agrees with the conclusion of Westinghouse Savannah River Company (WSRC) that the Pen Branch fault is a non-capable fault. ESAC is a committee of 12 earth science professionals from academia and industry with the charter of providing outside peer review of SRS geotechnical, seismic, and ground water modeling programs.

  12. Cotranslational folding of deeply knotted proteins

    E-Print Network [OSTI]

    Chwastyk, Mateusz

    2015-01-01

    Proper folding of deeply knotted proteins has a very low success rate even in structure-based models which favor formation of the native contacts but have no topological bias. By employing a structure-based model, we demonstrate that cotranslational folding on a model ribosome may enhance the odds to form trefoil knots for protein YibK without any need to introduce any non-native contacts. The ribosome is represented by a repulsive wall that keeps elongating the protein. On-ribosome folding proceeds through a a slipknot conformation. We elucidate the mechanics and energetics of its formation. We show that the knotting probability in on-ribosome folding is a function of temperature and that there is an optimal temperature for the process. Our model often leads to the establishment of the native contacts without formation of the knot.

  13. Inverse Folding of RNA Pseudoknot Structures

    E-Print Network [OSTI]

    Gao, James Z M; Reidys, Christian M

    2010-01-01

    Background: RNA exhibits a variety of structural configurations. Here we consider a structure to be tantamount to the noncrossing Watson-Crick and \\pairGU-base pairings (secondary structure) and additional cross-serial base pairs. These interactions are called pseudoknots and are observed across the whole spectrum of RNA functionalities. In the context of studying natural RNA structures, searching for new ribozymes and designing artificial RNA, it is of interest to find RNA sequences folding into a specific structure and to analyze their induced neutral networks. Since the established inverse folding algorithms, {\\tt RNAinverse}, {\\tt RNA-SSD} as well as {\\tt INFO-RNA} are limited to RNA secondary structures, we present in this paper the inverse folding algorithm {\\tt Inv} which can deal with 3-noncrossing, canonical pseudoknot structures. Results: In this paper we present the inverse folding algorithm {\\tt Inv}. We give a detailed analysis of {\\tt Inv}, including pseudocodes. We show that {\\tt Inv} allows to...

  14. Mutagenic effects on protein folding and stability

    E-Print Network [OSTI]

    Anderson, Thomas Anthony, 1973-

    2002-01-01

    Knowing how sequence information dictates the formation of protein structure is critical for accurate prediction of structure, for de novo protein design, and for understanding protein folding and misfolding. Based on ...

  15. DMBC: Web Planning & Layouts Above the Fold

    E-Print Network [OSTI]

    Stowell, Michael

    DMBC: Web Planning & Layouts Above the Fold · · Website Heig Website width ht Important content - lipsum.com) Media Placeholders g & Organization · · Triad C C S· hades · Custom F Web Layouts Photosho

  16. Critical Issues Geologic mapping

    E-Print Network [OSTI]

    Polly, David

    , and productive cooperation with many other organizations all combine to enhance the IGS-bed methane, and geothermal energy. The IGS's important sources of information--geologic maps, rock and core technologies of energy production, such as integrated gasification combined cycle systems and underground coal

  17. Toward a Theory on the Stability of Protein Folding: Challenges for Folding Models

    E-Print Network [OSTI]

    Walter Simmons; Joel L. Weiner

    2011-12-28

    We adopt the point of view that analysis of the stability of the protein folding process is central to understanding the underlying physics of folding. Stability of the folding process means that many perturbations do not disrupt the progress from the random coil to the native state. In this paper we explore the stability of folding using established methods from physics and mathematics. Our result is a preliminary theory of the physics of folding. We suggest some tests of these ideas using folding simulations. We begin by supposing that folding events are related in some way to mechanical waves on the molecule. We adopt an analytical approach to the physics which was pioneered by M.V. Berry, (in another context), based upon mathematics developed mainly by R. Thom and V.I. Arnold. We find that the stability of the folding process can be understood in terms of structures known as caustics, which occur in many kinds of wave phenomena. The picture that emerges is that natural selection has given us a set of protein molecules which have mechanical waves that propagate according to several mathematically specific restrictions. Successful simulations of folding can be used to test and constrain these wave motions. With some additional assumptions the theory explains or is consistent with a number of experimental facts about folding. We emphasize that this wave-based approach is fundamentally different from energy-based approaches.

  18. A phenomenological model of protein folding

    E-Print Network [OSTI]

    Danielsson, Ulf H; Niemi, Antti J

    2009-01-01

    We construct a phenomenological effective field theory model that describes the universality class of biologically active single-strand proteins. The model allows both for an explicit construction of native state protein conformations, and a dynamical description of protein folding and unfolding processes. The model reveals a connection between homochirality and protein collapse, and enables the theoretical investigation of various other aspects of protein folding even in the case of very long polypeptide chains where other methods are not available.

  19. Hierarchical Protein Folding Pathways: A Computational Study of Protein Fragments

    E-Print Network [OSTI]

    Haspel, Nurit

    Hierarchical Protein Folding Pathways: A Computational Study of Protein Fragments Nurit Haspel,1 folding model. The model postulates that protein folding is a hierarchical top-down pro- cess. The basic words: protein folding; building blocks; pro- tein structure prediction; hierarchical folding; protein

  20. Predicting Protein Folding Mohammed J. Zaki, Vinay Nadimpally, Deb

    E-Print Network [OSTI]

    Zaki, Mohammed Javeed

    Predicting Protein Folding Pathways Mohammed J. Zaki, Vinay Nadimpally, Deb Bardhan, Chris Bystroff 1. Predicting Protein Folding Pathways Summary. A structured folding pathway, which is a time ordered sequence of folding events, plays an important role in the protein folding process and hence

  1. DYNAMIC INVARIANTS IN PROTEIN FOLDING PATHWAYS REVEALED BY TENSOR ANALYSIS

    E-Print Network [OSTI]

    Langmead, Christopher James

    DYNAMIC INVARIANTS IN PROTEIN FOLDING PATHWAYS REVEALED BY TENSOR ANALYSIS Arvind Ramanathan Lane a spatio-temporal analysis of protein folding pathways. We applied our method to folding simulations of how a protein folds into its functionally relevant conformations. Protein folding pathways span over

  2. FROM GENETIC CODING TO PROTEIN FOLDING Jean-Luc Jestin

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    FROM GENETIC CODING TO PROTEIN FOLDING Jean-Luc Jestin ABSTRACT A discrete classical mechanics (DCM of the genetic code. A DCM model for protein folding allows a set of folding nuclei to be derived for each. A PROTEIN FOLDING MODEL Let us consider the following protein folding model. A chemical group of mass m

  3. Data Analysis of Villin Headpiece Subdomain Folding Simulations.

    E-Print Network [OSTI]

    seeks to understand the process of protein folding by analyzing the vast amount of data generated while simulating the folding of the villin headpiece. Introduction Protein folding has been called one proteins unlike homology or threading based approaches. Protein folding studies the folding trajectory

  4. Protein Folding: A Perspective From Statistical Physics

    E-Print Network [OSTI]

    Jinzhi Lei; Kerson Huang

    2010-02-26

    In this paper, we introduce an approach to the protein folding problem from the point of view of statistical physics. Protein folding is a stochastic process by which a polypeptide folds into its characteristic and functional 3D structure from random coil. The process involves an intricate interplay between global geometry and local structure, and each protein seems to present special problems. We introduce CSAW (conditioned self-avoiding walk), a model of protein folding that combines the features of self-avoiding walk (SAW) and the Monte Carlo method. In this model, the unfolded protein chain is treated as a random coil described by SAW. Folding is induced by hydrophobic forces and other interactions, such as hydrogen bonding, which can be taken into account by imposing conditions on SAW. Conceptually, the mathematical basis is a generalized Langevin equation. To illustrate the flexibility and capabilities of the model, we consider several examples, including helix formation, elastic properties, and the transition in the folding of myoglobin. From the CSAW simulation and physical arguments, we find a universal elastic energy for proteins, which depends only on the radius of gyration $R_{g}$ and the residue number $N$. The elastic energy gives rise to scaling laws $R_{g}\\sim N^{\

  5. Geology and Geophysics 454: Engineering Geology Spring Semester, 2015, 3.0 Units

    E-Print Network [OSTI]

    1 Geology and Geophysics 454: Engineering Geology Spring Semester, 2015: "Engineering Geology" by Perry Rahn, or "Practical Engineering Geology" by Steve Hencher Class Themes This class emphasizes a modern approach to engineering geology

  6. The Lapworth Museum of Geology

    E-Print Network [OSTI]

    Birmingham, University of

    The Lapworth Museum of Geology www.lapworth.bham.ac.uk www.bham.ac.uk Events The Lapworth Lectures take place on evenings during University term time. These lectures are on a wide range of geological geological topics, usually based around collections in the museum. These provide an opportunity to see

  7. DEPARTMENT OF GEOLOGY & GEOPHYSICS UNDERGRADUATE

    E-Print Network [OSTI]

    DEPARTMENT OF GEOLOGY & GEOPHYSICS UNDERGRADUATE SURVIVAL MANUAL 2014-2015 SCHOOL OF OCEAN & EARTH SCIENCE & TECHNOLOGY UNIVERSITY OF HAWAI`I AT MNOA Updated January 2015 #12;INTRODUCTION 1 Geology OF GEOLOGY & GEOPHYSICS _ 2 Who We Are _ 2 Where To Get Help _ 2 POLICIES, PROCEDURES & REQUIREMENTS 3

  8. GEOLOGY, September 2010 823 INTRODUCTION

    E-Print Network [OSTI]

    Demouchy, Sylvie

    GEOLOGY, September 2010 823 INTRODUCTION Deformations around transpressive plate boundaries numerical models constrained by global positioning system (GPS) observations and Geology, September 2010; v. 38; no. 9; p. 823­826; doi: 10.1130/G30963.1; 3 figures; 1 table. © 2010 Geological Society

  9. Exploring zipping and assembly as a protein folding principle

    E-Print Network [OSTI]

    Voelz, Vince A; Dill, Ken A

    2007-01-01

    and the mechanism of protein folding. Ann Rev Biochem 1982;Baldwin RL. How does protein folding get started? TRENDS inNucleation mechanisms in protein folding. Current Opinion in

  10. Increasing Stability Reduces Conformational Heterogeneity in a Protein Folding

    E-Print Network [OSTI]

    Increasing Stability Reduces Conformational Heterogeneity in a Protein Folding Intermediate, the results show that protein folding intermediates are ensembles of different structural forms direct experi- mental evidence in support of a basic tenet of energy landscape theory for protein folding

  11. Exploring zipping and assembly as a protein folding principle

    E-Print Network [OSTI]

    Voelz, Vince A; Dill, Ken A

    2007-01-01

    C. Are there pathways for protein folding? Journal de Chimieand the mechanism of protein folding. Ann Rev Biochem 1982;Baldwin RL. How does protein folding get started? TRENDS in

  12. THE UNIVERSITY OF CHICAGO CHARACTERIZATION OF PROTEIN FOLDING INTERMEDIATES

    E-Print Network [OSTI]

    Sosnick, Tobin R.

    THE UNIVERSITY OF CHICAGO CHARACTERIZATION OF PROTEIN FOLDING INTERMEDIATES FOR DELINEATION ............................................................................................................ 1 1.1 Why study protein folding .............................................................................. 3 1.2.1 How fast should a protein fold ........................................................... 3

  13. Protein folding using contact maps Michele Vendruscolo and Eytan Domany

    E-Print Network [OSTI]

    Domany, Eytan

    Protein folding using contact maps Michele Vendruscolo and Eytan Domany Department of Physics 26 I. INTRODUCTION Computational approaches to protein folding are divided into two main categories protein fold prediction. Contact maps are a particularly manageable representation of protein structure

  14. Predicting Protein Folding Kinetics via Temporal Logic Model Checking: Extended

    E-Print Network [OSTI]

    Langmead, Christopher James

    Predicting Protein Folding Kinetics via Temporal Logic Model Checking: Extended Abstract Abstract. We present a novel approach for predicting protein folding kinetics using techniques from checking. We tested our method on 19 test proteins. The quantitative predictions regarding folding rates

  15. September 2012 BASIN RESEARCH AND ENERGY GEOLOGY

    E-Print Network [OSTI]

    Suzuki, Masatsugu

    September 2012 BASIN RESEARCH AND ENERGY GEOLOGY STATE UNIVERSITY OF NEW YORK at BINGHAMTON research programs in geochemistry, sedimentary geology, or Earth surface processes with the potential the position, visit the Geological Sciences and Environmental Studies website (www.geology

  16. Sensor Fault Detection and Isolation System 

    E-Print Network [OSTI]

    Yang, Cheng-Ken

    2014-08-01

    The purpose of this research is to develop a Fault Detection and Isolation (FDI) system which is capable to diagnosis multiple sensor faults in nonlinear cases. In order to lead this study closer to real world applications ...

  17. NETL Report format template

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    United States Government or any agency thereof. Cover Illustration: Faults, folds, and salt in the northern Gulf of Mexico Basin. Structural geology plays an important role in the...

  18. Establishing MICHCARB, a geological carbon sequestration research...

    Office of Scientific and Technical Information (OSTI)

    Western Michigan University 58 GEOSCIENCES Geological carbon sequestration Enhanced oil recovery Characterization of oil, gas and saline reservoirs Geological carbon...

  19. Fault Models for Quantum Mechanical Switching Networks

    E-Print Network [OSTI]

    Jacob Biamonte; Jeff S. Allen; Marek A. Perkowski

    2010-01-19

    The difference between faults and errors is that, unlike faults, errors can be corrected using control codes. In classical test and verification one develops a test set separating a correct circuit from a circuit containing any considered fault. Classical faults are modelled at the logical level by fault models that act on classical states. The stuck fault model, thought of as a lead connected to a power rail or to a ground, is most typically considered. A classical test set complete for the stuck fault model propagates both binary basis states, 0 and 1, through all nodes in a network and is known to detect many physical faults. A classical test set complete for the stuck fault model allows all circuit nodes to be completely tested and verifies the function of many gates. It is natural to ask if one may adapt any of the known classical methods to test quantum circuits. Of course, classical fault models do not capture all the logical failures found in quantum circuits. The first obstacle faced when using methods from classical test is developing a set of realistic quantum-logical fault models. Developing fault models to abstract the test problem away from the device level motivated our study. Several results are established. First, we describe typical modes of failure present in the physical design of quantum circuits. From this we develop fault models for quantum binary circuits that enable testing at the logical level. The application of these fault models is shown by adapting the classical test set generation technique known as constructing a fault table to generate quantum test sets. A test set developed using this method is shown to detect each of the considered faults.

  20. Topologies to geometries in protein folding: Hierarchical and nonhierarchical scenarios

    E-Print Network [OSTI]

    Berry, R. Stephen

    Topologies to geometries in protein folding: Hierarchical and nonhierarchical scenarios Ariel Ferna presents a method to portray protein folding dynamics at a coarse resolution, based on a pattern

  1. Protein Folding: A New Geometric Analysis

    E-Print Network [OSTI]

    Walter A. Simmons; Joel L. Weiner

    2008-09-11

    A geometric analysis of protein folding, which complements many of the models in the literature, is presented. We examine the process from unfolded strand to the point where the strand becomes self-interacting. A central question is how it is possible that so many initial configurations proceed to fold to a unique final configuration. We put energy and dynamical considerations temporarily aside and focus upon the geometry alone. We parameterize the structure of an idealized protein using the concept of a ribbon from differential geometry. The deformation of the ribbon is described by introducing a generic twisting Ansatz. The folding process in this picture entails a change in shape guided by the local amino acid geometry. The theory is reparamaterization invariant from the start, so the final shape is independent of folding time. We develop differential equations for the changing shape. For some parameter ranges, a sine-Gordon torsion soliton is found. This purely geometric waveform has properties similar to dynamical solitons. Namely: A threshold distortion of the molecule is required to initiate the soliton, after which, small additional distortions do not change the waveform. In this analysis, the soliton twists the molecule until bonds form. The analysis reveals a quantitative relationship between the geometry of the amino acids and the folded form.

  2. High temperature superconducting fault current limiter

    DOE Patents [OSTI]

    Hull, J.R.

    1997-02-04

    A fault current limiter for an electrical circuit is disclosed. The fault current limiter includes a high temperature superconductor in the electrical circuit. The high temperature superconductor is cooled below its critical temperature to maintain the superconducting electrical properties during operation as the fault current limiter. 15 figs.

  3. High temperature superconducting fault current limiter

    DOE Patents [OSTI]

    Hull, John R. (Hinsdale, IL)

    1997-01-01

    A fault current limiter (10) for an electrical circuit (14). The fault current limiter (10) includes a high temperature superconductor (12) in the electrical circuit (14). The high temperature superconductor (12) is cooled below its critical temperature to maintain the superconducting electrical properties during operation as the fault current limiter (10).

  4. Exploring the mechanisms of protein folding

    E-Print Network [OSTI]

    Xu, Ji; Ren, Ying; Li, Jinghai

    2013-01-01

    Neither of the two prevalent theories, namely thermodynamic stability and kinetic stability, provides a comprehensive understanding of protein folding. The thermodynamic theory is misleading because it assumes that free energy is the exclusive dominant mechanism of protein folding, and attributes the structural transition from one characteristic state to another to energy barriers. Conversely, the concept of kinetic stability overemphasizes dominant mechanisms that are related to kinetic factors. This article explores the stability condition of protein structures from the viewpoint of meso-science, paying attention to the compromise in the competition between minimum free energy and other dominant mechanisms. Based on our study of complex systems, we propose that protein folding is a meso-scale, dissipative, nonlinear and non-equilibrium process that is dominated by the compromise between free energy and other dominant mechanisms such as environmental factors. Consequently, a protein shows dynamic structures,...

  5. Toward a Theory on the Stability of Protein Folding: Challenges for Folding Models

    E-Print Network [OSTI]

    Simmons, Walter

    2011-01-01

    We adopt the point of view that analysis of the stability of the protein folding process is central to understanding the underlying physics of folding. Stability of the folding process means that many perturbations do not disrupt the progress from the random coil to the native state. In this paper we explore the stability of folding using established methods from physics and mathematics. Our result is a preliminary theory of the physics of folding. We suggest some tests of these ideas using folding simulations. We begin by supposing that folding events are related in some way to mechanical waves on the molecule. We adopt an analytical approach to the physics which was pioneered by M.V. Berry, (in another context), based upon mathematics developed mainly by R. Thom and V.I. Arnold. We find that the stability of the folding process can be understood in terms of structures known as caustics, which occur in many kinds of wave phenomena. The picture that emerges is that natural selection has given us a set of prot...

  6. CSAW: a dynamical model of protein folding

    E-Print Network [OSTI]

    Kerson Huang

    2006-01-12

    CSAW (conditioned self-avoiding walk) is a model of protein folding that combines SAW (self-avoiding walk) with Monte-Carlo. It simulates the Brownian motion of a chain molecule in the presence of interactions, both among chain residues, and with the environment. In a first model that includes the hydrophobic effect and hydrogen bonding, a chain of 30 residues folds into a native state with stable secondary and tertiary structures. The process starts with a rapid collapse into an intermediate "molten globule", which slowly decays into the native state afer a relatively long quiescent period. The behavior of the radius of gyration mimics experimental data.

  7. Nonlinear conformation of secondary protein folding

    E-Print Network [OSTI]

    Januar, M; Handoko, L T

    2012-01-01

    A model to describe the mechanism of conformational dynamics in secondary protein based on matter interactions is proposed. The approach deploys the lagrangian method by imposing certain symmetry breaking. The protein backbone is initially assumed to be nonlinear and represented by the Sine-Gordon equation, while the nonlinear external bosonic sources is represented by $\\phi^4$ interaction. It is argued that the nonlinear source induces the folding pathway in a different way than the previous work with initially linear backbone. Also, the nonlinearity of protein backbone decreases the folding speed.

  8. Resistance proof, folding-inhibitor drugs

    E-Print Network [OSTI]

    R. Broglia; G. Tiana; R. Berera

    2002-10-09

    Conventional drugs work, as a rule, by inhibiting the enzymatic activity of specific proteins, capping their active site. In this paper we present a model of non- conventional drug design based on the inhibiting effects small peptides obtained from segments of the protein itself have on the folding ability of the system. Such peptides attach to the newly expressed (unfolded) protein and inhibit its folding, inhibition which cannot be avoided but through mutations which in any case denaturate the enzyme. These peptides, or their mimetic molecules, can be used as effective alternative drugs to those already available, displaying the advantage of not suffering from the upraise of resistence.

  9. Circular permutant GFP insertion folding reporters

    DOE Patents [OSTI]

    Waldo, Geoffrey S. (Santa Fe, NM); Cabantous, Stephanie (Los Alamos, NM)

    2011-06-14

    Provided are methods of assaying and improving protein folding using circular permutants of fluorescent proteins, including circular permutants of GFP variants and combinations thereof. The invention further provides various nucleic acid molecules and vectors incorporating such nucleic acid molecules, comprising polynucleotides encoding fluorescent protein circular permutants derived from superfolder GFP, which polynucleotides include an internal cloning site into which a heterologous polynucleotide may be inserted in-frame with the circular permutant coding sequence, and which when expressed are capable of reporting on the degree to which a polypeptide encoded by such an inserted heterologous polynucleotide is correctly folded by correlation with the degree of fluorescence exhibited.

  10. Circular permutant GFP insertion folding reporters

    DOE Patents [OSTI]

    Waldo, Geoffrey S. (Santa Fe, NM); Cabantous, Stephanie (Los Alamos, NM)

    2008-06-24

    Provided are methods of assaying and improving protein folding using circular permutants of fluorescent proteins, including circular permutants of GFP variants and combinations thereof. The invention further provides various nucleic acid molecules and vectors incorporating such nucleic acid molecules, comprising polynucleotides encoding fluorescent protein circular permutants derived from superfolder GFP, which polynucleotides include an internal cloning site into which a heterologous polynucleotide may be inserted in-frame with the circular permutant coding sequence, and which when expressed are capable of reporting on the degree to which a polypeptide encoded by such an inserted heterologous polynucleotide is correctly folded by correlation with the degree of fluorescence exhibited.

  11. Circular permutant GFP insertion folding reporters

    DOE Patents [OSTI]

    Waldo, Geoffrey S; Cabantous, Stephanie

    2013-02-12

    Provided are methods of assaying and improving protein folding using circular permutants of fluorescent proteins, including circular permutants of GFP variants and combinations thereof. The invention further provides various nucleic acid molecules and vectors incorporating such nucleic acid molecules, comprising polynucleotides encoding fluorescent protein circular permutants derived from superfolder GFP, which polynucleotides include an internal cloning site into which a heterologous polynucleotide may be inserted in-frame with the circular permutant coding sequence, and which when expressed are capable of reporting on the degree to which a polypeptide encoded by such an inserted heterologous polynucleotide is correctly folded by correlation with the degree of fluorescence exhibited.

  12. Circular permutant GFP insertion folding reporters

    DOE Patents [OSTI]

    Waldo, Geoffrey S.; Cabantous, Stephanie

    2013-04-16

    Provided are methods of assaying and improving protein folding using circular permutants of fluorescent proteins, including circular permutants of GFP variants and combinations thereof. The invention further provides various nucleic acid molecules and vectors incorporating such nucleic acid molecules, comprising polynucleotides encoding fluorescent protein circular permutants derived from superfolder GFP, which polynucleotides include an internal cloning site into which a heterologous polynucleotide may be inserted in-frame with the circular permutant coding sequence, and which when expressed are capable of reporting on the degree to which a polypeptide encoded by such an inserted heterologous polynucleotide is correctly folded by correlation with the degree of fluorescence exhibited.

  13. DNA Nanomechanical Switches under Folding Kinetics Control

    E-Print Network [OSTI]

    Meller, Amit

    DNA Nanomechanical Switches under Folding Kinetics Control Virgile Viasnoff,, Amit Meller operate at equilibrium under changes in solution composition. We propose an alternative DNA switch design after heat denaturation drives the switch to its lowest energy conformation, while rapid cooling (>100

  14. Solvent-induced forces in protein folding

    SciTech Connect (OSTI)

    Ben-Naim, A. (Hebrew Univ., Jerusalem (Israel))

    1990-08-23

    The solvent-induced forces between various groups on the protein are examined. It is found that the intramolecular hydrophilic forces are likely to be the strongest forces mediated through the solvent. It is argued that these are probably the most important solvent-induced driving forces in the process of protein folding.

  15. Critical aspects of hierarchical protein folding

    E-Print Network [OSTI]

    Alex Hansen; Mogens H. Jensen; Kim Sneppen; Giovanni Zocchi

    1998-01-13

    We argue that the first order folding transitions of proteins observed at physiological chemical conditions end in a critical point for a given temperature and chemical potential of the surrounding water. We investigate this critical point using a hierarchical Hamiltonian and determine its universality class. This class differs qualitatively from those of other known models.

  16. Folded-path optical analysis gas cell

    DOE Patents [OSTI]

    Carangelo, R.M.; Wright, D.D.

    1995-08-08

    A folded-path gas cell employs an elliptical concave mirror in confronting relationship to two substantially spherical concave mirrors. At least one of the spherical mirrors, and usually both, are formed with an added cylindrical component to increase orthogonal foci coincidence and thereby to increase the radiation energy throughput characteristic of the cell. 10 figs.

  17. Folded-path optical analysis gas cell

    DOE Patents [OSTI]

    Carangelo, Robert M. (Glastonbury, CT); Wright, David D. (Vershire, VT)

    1995-01-01

    A folded-path gas cell employs an elliptical concave mirror in confronting relationship to two substantially spherical concave mirrors. At least one of the spherical mirrors, and usually both, are formed with an added cylindrical component to increase orthogonal focii coincidence and thereby to increase the radiation energy throughput characteristic of the cell.

  18. Polypeptide chain collapse and protein folding Jayant B. Udgaonkar

    E-Print Network [OSTI]

    Review Polypeptide chain collapse and protein folding Jayant B. Udgaonkar National Centre is an integral component of a protein folding reaction. In this review, exper- imental characterization solvent [2]. A distinctive physical feature of any protein folding reaction is the greater than 3-fold

  19. Cellular mechanisms of membrane protein folding William R Skach

    E-Print Network [OSTI]

    Cai, Long

    Cellular mechanisms of membrane protein folding William R Skach The membrane protein­folding. This Perspective will focus on emerging evidence that the RTC functions as a protein-folding machine that restricts. The process of polytopic (multispanning) membrane protein folding can be viewed as a series of sequential

  20. Optimization of a Microfluidic Mixer for Studying Protein Folding Kinetics

    E-Print Network [OSTI]

    Santiago, Juan G.

    Optimization of a Microfluidic Mixer for Studying Protein Folding Kinetics David E. Hertzog with numerical simulations to minimize the mixing time of a microfluidic mixer developed for protein folding reported continuous flow mixer for protein folding. Fast events in protein folding often occur

  1. Nonlinear dynamics of secondary protein folding Natalia G. Berloff

    E-Print Network [OSTI]

    Nonlinear dynamics of secondary protein folding Natalia G. Berloff Department of Applied field varies. Pacs: 87.15.-v, 87.15By, 05.45.-a, 41.20Jb Keywords: Folding pathway, protein folding interaction and hydrophobic effects. The most common shapes of the protein folding are alpha () and beta

  2. COMMUNICATION First Principles Prediction of Protein Folding Rates

    E-Print Network [OSTI]

    Goddard III, William A.

    COMMUNICATION First Principles Prediction of Protein Folding Rates Derek A. Debe and William A studies have demonstrated that many small, single-domain proteins fold via simple two-state kinetics. We. # 1999 Academic Press Keywords: protein folding; kinetics; diffusion; fold topology; nucleation

  3. Protein folding by zipping and assembly S. Banu Ozkan*

    E-Print Network [OSTI]

    Southern California, University of

    Protein folding by zipping and assembly S. Banu Ozkan* , G. Albert Wu* , John D. Chodera, CA, May 2, 2007 (received for review April 13, 2006) How do proteins fold so quickly? Some denatured proteins fold to their native structures in only microseconds, on average, implying that there is a folding

  4. Automated Discovery of Structural Signatures of Protein Fold and Function

    E-Print Network [OSTI]

    Muggleton, Stephen H.

    Automated Discovery of Structural Signatures of Protein Fold and Function Marcel Turcotte1 sys- tematically for protein fold signatures, we have explored the use of Inductive Logic Programming fold. The work showed that signatures of protein folds exist, about half of rules discov- ered

  5. Geological Hazards Labs Spring 2010

    E-Print Network [OSTI]

    Chen, Po

    Geological Hazards Labs Spring 2010 TA: En-Jui Lee (http://www.gg.uwyo.edu/ggstudent/elee8/site - An Indispensible Tool in Hazard Planning 3 26/1; 27/1 Lab 2: Geologic Maps - Mapping the Hazards 4 2/2; 3/2 Lab 3: Population - People at Risk 5 9/2; 10/2 Lab 4: Plate Tectonics - Locating Geologic Hazards 6 16/2; 17/2 Lab 5

  6. Heteropolymer Folding 9 1. C. Gh'elis and J. Yon, Protein Folding (Academic, New York, 1982).

    E-Print Network [OSTI]

    Roma "La Sapienza", Università di

    Heteropolymer Folding 9 References 1. C. Gh'elis and J. Yon, Protein Folding (Academic, New York, editor, The Protein Folding Problem (Westview, Boulder, 1984).. 5. N. Gâ??o, Annu. Rev. Biophys. Bioeng. 12 for Protein Folding, Europhys. Lett. 6, 307 (1988). 14. G. Iori, E. Marinari, G. Parisi and M. V. Struglia

  7. Engineering geology and geohydrology of the Burkeville Confining System northeast of Conroe, Texas 

    E-Print Network [OSTI]

    Daniel, Joseph Hawkins

    1988-01-01

    Units Structure General. Faults Salt Domes Subsidence. Geologic History Regional Setting. Environment of Deposition. Geohydrology Chronology of Selected Studies. Summary of Investigations Water Well Data 9 9 13 16 16 17 17 17 19 25... of the Texas Coastal Plain was reviewed by Baker in 1979. Digital models were developed for the Chicot and Evangeline Aquifers by Carr and others (1985). Summary of Investigations The early ground-water studies were directed primarily at the stratigraphy...

  8. Detailed Geophysical Fault Characterization in Yucca Flat, Nevada Test Site, Nevada

    SciTech Connect (OSTI)

    Theodore H. Asch; Donald Sweetkind; Bethany L. Burton; Erin L. Wallin

    2009-02-10

    Yucca Flat is a topographic and structural basin in the northeastern part of the Nevada Test Site (NTS) in Nye County, Nevada. Between the years 1951 and 1992, 659 underground nuclear tests took place in Yucca Flat; most were conducted in large, vertical excavations that penetrated alluvium and the underlying Cenozoic volcanic rocks. Radioactive and other potential chemical contaminants at the NTS are the subject of a long-term program of investigation and remediation by the U.S. Department of Energy (DOE), National Nuclear Security Administration, Nevada Site Office, under its Environmental Restoration Program. As part of the program, the DOE seeks to assess the extent of contamination and to evaluate the potential risks to humans and the environment from byproducts of weapons testing. To accomplish this objective, the DOE Environmental Restoration Program is constructing and calibrating a ground-water flow model to predict hydrologic flow in Yucca Flat as part of an effort to quantify the subsurface hydrology of the Nevada Test Site. A necessary part of calibrating and evaluating a model of the flow system is an understanding of the location and characteristics of faults that may influence ground-water flow. In addition, knowledge of fault-zone architecture and physical properties is a fundamental component of the containment of the contamination from underground nuclear tests, should such testing ever resume at the Nevada Test Site. The goal of the present investigation is to develop a detailed understanding of the geometry and physical properties of fault zones in Yucca Flat. This study was designed to investigate faults in greater detail and to characterize fault geometry, the presence of fault splays, and the fault-zone width. Integrated geological and geophysical studies have been designed and implemented to work toward this goal. This report describes the geophysical surveys conducted near two drill holes in Yucca Flat, the data analyses performed, and the integrated interpretations developed from the suite of geophysical methodologies utilized in this investigation. Data collection for this activity started in the spring of 2005 and continued into 2006. A suite of electrical geophysical surveys were run in combination with ground magnetic surveys; these surveys resulted in high-resolution subsurface data that portray subsurface fault geometry at the two sites and have identified structures not readily apparent from surface geologic mapping, potential field geophysical data, or surface effects fracture maps.

  9. Geological Problems in Radioactive Waste Isolation: Second Worldwide Review

    E-Print Network [OSTI]

    2010-01-01

    W PROGRAMME Geological characterization prior to repositoryShort-term Characterization Program Geological Formations toexisting geological information, site characterization and

  10. Montana State University 1 Geology Option

    E-Print Network [OSTI]

    Maxwell, Bruce D.

    Montana State University 1 Geology Option The Geology Option is a degree program designed and private sectors in fields such as petroleum geology, mining geology, seismology (including earthquake and volcanic risk assessment), hydrology (surface and ground water) natural-hazard geology, environmental clean

  11. WSU B.S. Geology Curriculum (structural)

    E-Print Network [OSTI]

    Berdichevsky, Victor

    WSU B.S. Geology Curriculum Geology GEL 3300 (structural) GEL 3400 (sed/strat) Geology Elective 1 Geology Elective 2 Yr 1 Yr 2 Yr 3 Yr 4 PHY 2130/31 MAT 2010 PHY 2140/41 CHEM 1220/30 MAT 1800 Cognates GEL 5593 (writing intensive) GEL 3160 (petrology) GEL 3650 (field camp) Geology Elective 3 GEL 2130

  12. A simple theory of protein folding kinetics

    E-Print Network [OSTI]

    Pande, Vijay S

    2010-01-01

    We present a simple model of protein folding dynamics that captures key qualitative elements recently seen in all-atom simulations. The goals of this theory are to serve as a simple formalism for gaining deeper insight into the physical properties seen in detailed simulations as well as to serve as a model to easily compare why these simulations suggest a different kinetic mechanism than previous simple models. Specifically, we find that non-native contacts play a key role in determining the mechanism, which can shift dramatically as the energetic strength of non-native interactions is changed. For protein-like non-native interactions, our model finds that the native state is a kinetic hub, connecting the strength of relevant interactions directly to the nature of folding kinetics.

  13. Inverse folding of RNA pseudoknot structures

    E-Print Network [OSTI]

    Gao, James Z M; Reidys, Christian M

    2009-01-01

    Results: In this paper we present the inverse folding algorithm {\\tt inv} as well as two applications. We give a detailed analysis of {\\tt inv}, including pseudocodes. The algorithm is freely available at \\url{http://www.combinatorics.cn/cbpc/inv.html}. We show, using 3-noncrossing nonplanar RNA pseudoknot structures as an example, that {\\tt inv} allows to design specific 3-noncrossing RNA structures. Furthermore we use {\\tt inv} for estimating the distance of the neutral networks. Conclusions: The algorithm {\\tt inv} extends inverse folding capabilities to RNA pseudoknot structures. In comparison with {\\tt RNAinverse} it uses new ideas, for instance by taking sets of competing structures into consideration. As a result, {\\tt inv} is able to find novel sequences even for RNA secondary structures.

  14. Area balance and strain in an extensional fault system: Strategies for improved oil recovery in fractured chalk, Gilbertown Field, southwestern Alabama. Annual report, March 1996--March 1997

    SciTech Connect (OSTI)

    Pashin, J.C.; Raymond, D.E.; Rindsberg, A.K.; Alabi, G.G.; Groshong, R.H.

    1997-08-01

    Gilbertown Field is the oldest oil field in Alabama and produces oil from chalk of the Upper Cretaceous Selma Group and from sandstone of the Eutaw Formation along the southern margin of the Gilbertown fault system. Most of the field has been in primary recovery since establishment, but production has declined to marginally economic levels. This investigation applies advanced geologic concepts designed to aid implementation of improved recovery programs. The Gilbertown fault system is detached at the base of Jurassic salt. The fault system began forming as a half graben and evolved in to a full graben by the Late Cretaceous. Conventional trapping mechanisms are effective in Eutaw sandstone, whereas oil in Selma chalk is trapped in faults and fault-related fractures. Burial modeling establishes that the subsidence history of the Gilbertown area is typical of extensional basins and includes a major component of sediment loading and compaction. Surface mapping and fracture analysis indicate that faults offset strata as young as Miocene and that joints may be related to regional uplift postdating fault movement. Preliminary balanced structural models of the Gilbertown fault system indicate that synsedimentary growth factors need to be incorporated into the basic equations of area balance to model strain and predict fractures in Selma and Eutaw reservoirs.

  15. GEOLOGY, December 2009 1115 INTRODUCTION

    E-Print Network [OSTI]

    Törnqvist, Torbjörn E.

    for land movements is to use geological data. Salt- marsh sedimentary sequences enable the recon- struction-based approaches, because subtle tectonic effects are incorporated into both the geological and 20th century rates., 2005; Church et al., 2008). It is widely accepted that the tectonic component along the passive marg

  16. The coarsening of folds in hanging drapes

    E-Print Network [OSTI]

    Peter Bella; Robert V. Kohn

    2015-07-29

    We consider the elastic energy of a hanging drape -- a thin elastic sheet, pulled down by the force of gravity, with fine-scale folding at the top that achieves approximately uniform confinement. This example of energy-driven pattern formation in a thin elastic sheet is of particular interest because the length scale of folding varies with height. We focus on how the minimum elastic energy depends on the physical parameters. As the sheet thickness vanishes, the limiting energy is due to the gravitational force and is relatively easy to understand. Our main accomplishment is to identify the "scaling law" of the correction due to positive thickness. We do this by (i) proving an upper bound, by considering the energies of several constructions and taking the best; (ii) proving an ansatz-free lower bound, which agrees with the upper bound up to a parameter-independent prefactor. The coarsening of folds in hanging drapes has also been considered in the recent physics literature, using a self-similar construction whose basic cell has been called a "wrinklon." Our results complement and extend that work, by showing that self-similar coarsening achieves the optimal scaling law in a certain parameter regime, and by showing that other constructions (involving lateral spreading of the sheet) do better in other regions of parameter space. Our analysis uses a geometrically linear F\\"{o}ppl-von K\\'{a}rm\\'{a}n model for the elastic energy, and is restricted to the case when Poisson's ratio is zero.

  17. Fault-tolerant dynamic task graph scheduling

    SciTech Connect (OSTI)

    Kurt, Mehmet C.; Krishnamoorthy, Sriram; Agrawal, Kunal; Agrawal, Gagan

    2014-11-16

    In this paper, we present an approach to fault tolerant execution of dynamic task graphs scheduled using work stealing. In particular, we focus on selective and localized recovery of tasks in the presence of soft faults. We elicit from the user the basic task graph structure in terms of successor and predecessor relationships. The work stealing-based algorithm to schedule such a task graph is augmented to enable recovery when the data and meta-data associated with a task get corrupted. We use this redundancy, and the knowledge of the task graph structure, to selectively recover from faults with low space and time overheads. We show that the fault tolerant design retains the essential properties of the underlying work stealing-based task scheduling algorithm, and that the fault tolerant execution is asymptotically optimal when task re-execution is taken into account. Experimental evaluation demonstrates the low cost of recovery under various fault scenarios.

  18. Collateral damage: Evolution with displacement of fracture distribution and secondary fault strands in fault damage zones

    E-Print Network [OSTI]

    Savage, Heather M.; Brodsky, Emily E.

    2011-01-01

    E. McCallum (1999), Reservoir damage around faults: OutcropSkar (2005), Controls on damage zone asymmetry of a normal2007), The evolution of the damage zone with fault growth in

  19. A fault location approach for fuzzy fault section estimation on radial distribution feeders 

    E-Print Network [OSTI]

    Andoh, Kwame Sarpong

    2000-01-01

    Locating the faulted section of a distribution system is a difficult task because of lack of accurate system models and the presence of uncertainty in the data used for estimating the fault section. Many of the methods used to account...

  20. Seismoelectric Imaging of a Shallow Fault System Employing Fault Guided Waves 

    E-Print Network [OSTI]

    Cohrs, Frelynn Joseph Reese

    2012-07-16

    . The seismic data revealed dispersive energy packets, indicative of guided waves, within the fault zone and absent in the surrounding lithologies. The seismoelectric data was able to produce comparable signals in the fault zone showing guided waves....

  1. Realistic fault modeling and quality test generation of combined delay faults 

    E-Print Network [OSTI]

    Thadhlani, Ajaykumar A

    2001-01-01

    With increasing operating speed and shrinking technology, timing defects in integrated circuits are becoming increasingly important. The well established stuck-at-fault model is not sufficient because it is a static fault model and does not account...

  2. Geology and Geophysics 303: Structural Geology Fall Semester, 2015, 3.0 Units

    E-Print Network [OSTI]

    Geology and Geophysics 303: Structural Geology Fall Semester, 2015, 3.0 Units Lectures: MW 10 Geology: An Introduction, by Pollard and Martel (PM) Basic Methods of Structural Geology, by Marshak geologic structures depends largely on how we perceive them. Few geologic structures form by trivially

  3. Evolution: Geology and climate drive diversification

    E-Print Network [OSTI]

    Gillespie, RG; Roderick, GK

    2014-01-01

    on 7 May 2014. EVO LU TI O N Geology and climate driveIslands exemplify how geology and climate can interact toevents, the dynamics of geology and climate can be powerful

  4. GEOLOGY AND FRACTURE SYSTEM AT STRIPA

    E-Print Network [OSTI]

    Olkiewicz, O.

    2010-01-01

    of underground test site •• 1.5 Regional bedrock geology.Stripa mine, sub-till geology in the immediate mine area.Fig. 2.1 Stripa mine, sub-till geology in the immediate mine

  5. Geology, Environmental Science, Geography, Environmental Management

    E-Print Network [OSTI]

    Goodman, James R.

    2011 Geology, Environmental Science, Geography, Environmental Management Postgraduate Handbook #12 Environmental Management 14 Environmental Science 18 Geography 22 Geographic Information Science 26 Geology, Applied Geology and Geoscience 30 Course descriptions 36 Masters and PhD programmes 52 The Masters

  6. Earthquake Nucleation on Geometrically Complex Faults

    E-Print Network [OSTI]

    Fang, Zijun

    2009-01-01

    Preseismic fault slip and earthquake prediction, J. Geophys.Day, The 1999 Izmit, Turkey, earthquake: A 3D dynamic stresstransfer model of intra-earthquake triggering, Bull.

  7. Earthquake Nucleation on Geometrically Complex Faults

    E-Print Network [OSTI]

    Fang, Zijun

    2009-01-01

    fault slip and earthquake prediction, J. Geophys. Res. , [implications for an earthquake prediction field monitoringpredictions of hypocenter location and occurrence time of earthquakes,

  8. Accurate resistive bridge fault modeling, simulation, and test generation 

    E-Print Network [OSTI]

    Sar-Dessai, Vijay Ramesh

    1999-01-01

    Resistive bridging faults in CMOS combinational circuits are studied in this work. Bridging faults are modeled using HSPICE circuit simulation of the various types of bridging faults that can occur in CMOS combinational ...

  9. Earthquake behavior and structure of oceanic transform faults

    E-Print Network [OSTI]

    Roland, Emily Carlson

    2012-01-01

    Oceanic transform faults that accommodate strain at mid-ocean ridge offsets represent a unique environment for studying fault mechanics. Here, I use seismic observations and models to explore how fault structure affects ...

  10. Fault Intersection | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTIONRobertsdale, AlabamaETEC GmbHFarinello Geothermal Power Station JumpFaroeFaulk County,Fault

  11. Fault Mapping | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTIONRobertsdale, AlabamaETEC GmbHFarinello Geothermal Power Station JumpFaroeFaulk County,FaultMapping

  12. Intermediates and the folding of proteins L and G

    E-Print Network [OSTI]

    Brown, Scott; Head-Gordon, Teresa

    2008-01-01

    a unifying mechanism for protein folding? [Review]. TrendsOn the transition coordinate for protein folding. Journal ofMonoclonal Antibodies. Protein Science 6(1), 99-108. Strang,

  13. Why are MD simulated protein folding times wrong? Dmitry Nerukh

    E-Print Network [OSTI]

    Nerukh, Dmitry

    Why are MD simulated protein folding times wrong? Dmitry Nerukh Unilever Centre for Molecular.ac.uk The question of significant deviations of protein folding times simulated using molecular dynamics from

  14. On the Kinematics of Protein Folding SEAN CAHILL,1

    E-Print Network [OSTI]

    Cahill, Kevin

    On the Kinematics of Protein Folding SEAN CAHILL,1 MICHAEL CAHILL,2 KEVIN CAHILL3 1 Department words: protein folding; homology modeling; loops; Monte Carlo; kinematics; wriggling Three Kinematic

  15. Protein Folding Simulation in CCP Luca Bortolussi1

    E-Print Network [OSTI]

    Bortolussi, Luca

    Protein Folding Simulation in CCP Luca Bortolussi1 , Alessandro Dal Pal`u1 , Agostino Dovier1 as the protein folding. This problem is fundamental for biological and pharmaceutical research. Currently

  16. New Crystal Structures Lift Fog around Protein Folding

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    may have found a new way to modify protein-folding activities. For example, engineering the nucleotide-sensing loop so that it promotes the desired rate of protein folding...

  17. Computational and experimental investigations of forces in protein folding 

    E-Print Network [OSTI]

    Schell, David Andrew

    2005-02-17

    Properly folded proteins are necessary for all living organisms. Incorrectly folded proteins can lead to a variety of diseases such as Alzheimer?s Disease or Bovine Spongiform Encephalitis (Mad Cow Disease). Understanding ...

  18. Experimental and Computational Studies on Protein Folding, Misfolding and Stability 

    E-Print Network [OSTI]

    Wei, Yun

    2010-07-14

    Proteins need fold to perform their biological function. Thus, understanding how proteins fold could be the key to understanding life. In the first study, the stability and structure of several !-hairpin peptide variants derived from the C...

  19. West Virginia University Geology 404, Geology Field Camp

    E-Print Network [OSTI]

    Kammer, Thomas

    , Stratigraphy-Sedimentation. Grades: Grades are based on field exercises. The final grade is based on the maps to describe and log stratigraphic sequences of sedimentary rocks. 2. To learn how to construct geologic maps

  20. Geologic simulation model for a hypothetical site in the Columbia Plateau. [AEGIS

    SciTech Connect (OSTI)

    Petrie, G.M.; Zellmer, J.T.; Lindberg, J.W.; Foley, M.G.

    1981-04-01

    This report describes the structure and operation of the Assessment of Effectiveness of Geologic Isolation Systems (AEGIS) Geologic Simulation Model, a computer simulation model of the geology and hydrology of an area of the Columbia Plateau, Washington. The model is used to study the long-term suitability of the Columbia Plateau Basalts for the storage of nuclear waste in a mined repository. It is also a starting point for analyses of such repositories in other geologic settings. The Geologic Simulation Model will aid in formulating design disruptive sequences (i.e. those to be used for more detailed hydrologic, transport, and dose analyses) from the spectrum of hypothetical geological and hydrological developments that could result in transport of radionuclides out of a repository. Quantitative and auditable execution of this task, however, is impossible without computer simulation. The computer simulation model aids the geoscientist by generating the wide spectrum of possible future evolutionary paths of the areal geology and hydrology, identifying those that may affect the repository integrity. This allows the geoscientist to focus on potentially disruptive processes, or series of events. Eleven separate submodels are used in the simulation portion of the model: Climate, Continental Glaciation, Deformation, Geomorphic Events, Hydrology, Magmatic Events, Meteorite Impact, Sea-Level Fluctuations, Shaft-Seal Failure, Sub-Basalt Basement Faulting, and Undetected Features. Because of the modular construction of the model, each submodel can easily be replaced with an updated or modified version as new information or developments in the state of the art become available. The model simulates the geologic and hydrologic systems of a hypothetical repository site and region for a million years following repository decommissioning. The Geologic Simulation Model operates in both single-run and Monte Carlo modes.

  1. Conversion of the Bryan Mound geological site characterization reports to a three-dimensional model.

    SciTech Connect (OSTI)

    Stein, Joshua S.; Rautman, Christopher Arthur

    2005-04-01

    The Bryan Mound salt dome, located near Freeport, Texas, is home to one of four underground crude oil-storage facilities managed by the U. S. Department of Energy Strategic Petroleum Reserve (SPR) Program. Sandia National Laboratories, as the geotechnical advisor to the SPR, conducts site-characterization investigations and other longer-term geotechnical and engineering studies in support of the program. This report describes the conversion of two-dimensional geologic interpretations of the Bryan Mound site into three-dimensional geologic models. The new models include the geometry of the salt dome, the surrounding sedimentary units, mapped faults, and the 20 oil-storage caverns at the site. This work provides an internally consistent geologic model of the Bryan Mound site that can be used in support of future work.

  2. How paper folds: bending with local constraints

    E-Print Network [OSTI]

    Jemal Guven; Martin Michael Mueller

    2007-12-06

    A variational framework is introduced to describe how a surface bends when it is subject to local constraints on its geometry. This framework is applied to describe the patterns of a folded sheet of paper. The unstretchability of paper implies a constraint on the surface metric; bending is penalized by an energy quadratic in mean curvature. The local Lagrange multipliers enforcing the constraint are identified with a conserved tangential stress that couples to the extrinsic curvature of the sheet. The framework is illustrated by examining the deformation of a flat sheet into a generalized cone.

  3. Geomechanical effects on CO{sub 2} leakage through fault zones during large-scale underground injection

    SciTech Connect (OSTI)

    Rinaldi, A.P.; Rutqvist, J.; Cappa, F.

    2013-09-01

    The importance of geomechanics—including the potential for faults to reactivate during large scale geologic carbon sequestration operations—has recently become more widely recognized. However, notwithstanding the potential for triggering notable (felt) seismic events, the potential for buoyancy-driven CO{sub 2} to reach potable groundwater and the ground surface is actually more important from public safety and storage-efficiency perspectives. In this context, this work extends the previous studies on the geomechanical modeling of fault responses during underground carbon dioxide injection, focusing on the short-term integrity of the sealing caprock, and hence on the potential for leakage of either brine or CO{sub 2} to reach the shallow groundwater aquifers during active injection. We consider stress/strain-dependent permeability and study the leakage through the fault zone as its permeability changes during a reactivation, also causing seismicity. We analyze several scenarios related to the volume of CO{sub 2} injected (and hence as a function of the overpressure), involving both minor and major faults, and analyze the profile risks of leakage for different stress/strain-permeability coupling functions. We conclude that whereas it is very difficult to predict how much fault permeability could change upon reactivation, this process can have a significant impact on the leakage rate. Moreover, our analysis shows that induced seismicity associated with fault reactivation may not necessarily open up a new flow path for leakage. Results show a poor correlation between magnitude and amount of fluid leakage, meaning that a single event is generally not enough to substantially change the permeability along the entire fault length. Consequently, even if some changes in permeability occur, this does not mean that the CO{sub 2} will migrate up along the entire fault, breaking through the caprock to enter the overlying aquifer.

  4. A Fault Oblivious Extreme-Scale Execution Environment

    SciTech Connect (OSTI)

    McKie, Jim

    2014-11-20

    The FOX project, funded under the ASCR X-stack I program, developed systems software and runtime libraries for a new approach to the data and work distribution for massively parallel, fault oblivious application execution. Our work was motivated by the premise that exascale computing systems will provide a thousand-fold increase in parallelism and a proportional increase in failure rate relative to today’s machines. To deliver the capability of exascale hardware, the systems software must provide the infrastructure to support existing applications while simultaneously enabling efficient execution of new programming models that naturally express dynamic, adaptive, irregular computation; coupled simulations; and massive data analysis in a highly unreliable hardware environment with billions of threads of execution. Our OS research has prototyped new methods to provide efficient resource sharing, synchronization, and protection in a many-core compute node. We have experimented with alternative task/dataflow programming models and shown scalability in some cases to hundreds of thousands of cores. Much of our software is in active development through open source projects. Concepts from FOX are being pursued in next generation exascale operating systems. Our OS work focused on adaptive, application tailored OS services optimized for multi ? many core processors. We developed a new operating system NIX that supports role-based allocation of cores to processes which was released to open source. We contributed to the IBM FusedOS project, which promoted the concept of latency-optimized and throughput-optimized cores. We built a task queue library based on distributed, fault tolerant key-value store and identified scaling issues. A second fault tolerant task parallel library was developed, based on the Linda tuple space model, that used low level interconnect primitives for optimized communication. We designed fault tolerance mechanisms for task parallel computations employing work stealing for load balancing that scaled to the largest existing supercomputers. Finally, we implemented the Elastic Building Blocks runtime, a library to manage object-oriented distributed software components. To support the research, we won two INCITE awards for time on Intrepid (BG/P) and Mira (BG/Q). Much of our work has had impact in the OS and runtime community through the ASCR Exascale OS/R workshop and report, leading to the research agenda of the Exascale OS/R program. Our project was, however, also affected by attrition of multiple PIs. While the PIs continued to participate and offer guidance as time permitted, losing these key individuals was unfortunate both for the project and for the DOE HPC community.

  5. Investigation of active faulting at the Emigrant Peak fault in Nevada using shallow seismic reflection and ground penetrating radar

    E-Print Network [OSTI]

    Christie, Michael Wayne

    2007-12-18

    The objective of this study was to assess fault displacement, off-fault deformation, and alluvial fan stratigraphy at the Emigrant Peak fault zone (EPFZ) in Fish Lake Valley, Nevada utilizing shallow seismic reflection (SSR) and ground penetrating...

  6. Evaluation of faulting characteristics and ground acceleration associated with recent movement along the Meers Fault, Southwestern Oklahoma 

    E-Print Network [OSTI]

    Burrell, Richard Dennis

    1997-01-01

    being cited as responsible for the Meers Fault scarp. Earthquakes of magnitude 7 to 8 occurring in conjunction with recent reactivation of the fault have been calculated. However, evidence found within the Wichita Mountains just south of the fault...

  7. Improving Distribution System Reliability Through Risk-base Doptimization of Fault Management and Improved Computer-based Fault Location 

    E-Print Network [OSTI]

    Dong, Yimai

    2013-11-07

    regulation on power quality. Optimization in fault management tasks has the potential of improving system reliability by reducing the duration and scale of outages caused by faults through fast fault isolation and service restoration. The research reported...

  8. Protein folding: Then and now Yiwen Chen 1

    E-Print Network [OSTI]

    Dokholyan, Nikolay V.

    Review Protein folding: Then and now Yiwen Chen 1 , Feng Ding 1 , Huifen Nie 1 , Adrian W decades the protein folding field has undergone monumental changes. Originally a purely academic question, how a protein folds has now become vital in understanding diseases and our abilities to rationally

  9. Author's personal copy Protein folding: Then and now

    E-Print Network [OSTI]

    Dokholyan, Nikolay V.

    Author's personal copy Review Protein folding: Then and now Yiwen Chen 1 , Feng Ding 1 , Huifen Nie Available online 8 June 2007 Abstract Over the past three decades the protein folding field has undergone monumental changes. Originally a purely academic question, how a protein folds has now become vital

  10. Predicting Protein Folding Kinetics via Temporal Logic Model Checking

    E-Print Network [OSTI]

    Predicting Protein Folding Kinetics via Temporal Logic Model Checking Christopher James Langmead award from the U.S. Department of Energy. #12;Keywords: protein folding, model checking, temporal logic #12;Abstract We present a novel approach for predicting protein folding kinetics using techniques from

  11. Modeling Protein Folding Pathways Christopher Bystroff, Yu Shao

    E-Print Network [OSTI]

    Bystroff, Chris

    Modeling Protein Folding Pathways Christopher Bystroff, Yu Shao Dept of Biology Rensselaer Polytechnic Institute, Troy, NY. e-mail:{bystrc, shaoy}@rpi.edu Summary Proteins fold through a series of intermediate states called a pathway. Protein folding pathways have been modeled using either simulations

  12. Protein Folding Simulation by Two-Stage Optimization

    E-Print Network [OSTI]

    Will, Sebastian

    Protein Folding Simulation by Two-Stage Optimization A. Dayem Ullah1 , L. Kapsokalivas1 , M. Mann2 propose a two-stage optimization approach for protein folding simulation in the FCC lattice, inspired from procedure based on simulated annealing alone. 1 Introduction The question of how proteins fold and whether

  13. Protein Folding Challenge and Theoretical Computer Science Somenath Biswas

    E-Print Network [OSTI]

    Biswas, Somenath

    Protein Folding Challenge and Theoretical Computer Science Somenath Biswas Department of Computer the chain of amino acids that defines a protein. The protein folding problem is: given a sequence of amino to use an efficient algorithm to carry out protein folding. The atoms in a protein molecule attract each

  14. Evolutionary Monte Carlo for protein folding simulations Faming Lianga)

    E-Print Network [OSTI]

    Liang, Faming

    Evolutionary Monte Carlo for protein folding simulations Faming Lianga) Department of Statistics to simulations of protein folding on simple lattice models, and to finding the ground state of a protein. In all structures in protein folding. The numerical results show that it is drastically superior to other methods

  15. Combinatorial Problems on Strings with Applications to Protein Folding

    E-Print Network [OSTI]

    Newman, Alantha

    Combinatorial Problems on Strings with Applications to Protein Folding Alantha Newman MIT San Jose, CA 95120, USA ruhl@almaden.ibm.com Abstract We consider the problem of protein folding in linear time. 1 Introduction We consider the problem of protein folding in the HP model on the three

  16. A Complete and Effective Move Set for Simplified Protein Folding

    E-Print Network [OSTI]

    Whitesides, Sue

    A Complete and Effective Move Set for Simplified Protein Folding Neal Lesh Mitsubishi Electric­13, 2003, Berlin, Germany. Copyright 2003 ACM 1-58113-635-8/03/0004 ...$5.00. Keywords protein folding, it captures the main features of the protein folding prob- lem. This problem is NP-complete, and hence

  17. Protein folding with stochastic L-systems Gemma Danks1

    E-Print Network [OSTI]

    Stepney, Susan

    Protein folding with stochastic L-systems Gemma Danks1 , Susan Stepney1 and Leo Caves1 1 University-like structures. Models of protein folding vary in complexity and the amount of prior knowledge they contain). The energy landscape theory of protein folding (Onuchic et al., 1997) predicts a rugged funnel-like energy

  18. Femtomole Mixer for Microsecond Kinetic Studies of Protein Folding

    E-Print Network [OSTI]

    Michalet, Xavier

    Femtomole Mixer for Microsecond Kinetic Studies of Protein Folding David E. Hertzog,, Xavier a microfluidic mixer for studying protein folding and other reactions with a mixing time of 8 µs and sample) measurements of single-stranded DNA. We also demon- strate the feasibility of measuring fast protein folding

  19. MATHEMATICAL MODELS OF PROTEIN FOLDING Daniel B. Dix

    E-Print Network [OSTI]

    Dix, Daniel B.

    MATHEMATICAL MODELS OF PROTEIN FOLDING Daniel B. Dix Department of Mathematics University of South Carolina Abstract. We present an elementary introduction to the protein folding problem directed toward, and biological problem, protein folding can also be precisely formulated as a set of mathematics problems. We

  20. Thermodynamics of Protein Folding from Coarse-Grained Models' Perspectives

    E-Print Network [OSTI]

    Janke, Wolfhard

    8 Thermodynamics of Protein Folding from Coarse-Grained Models' Perspectives Michael Bachmann applications. In this lecture, we focus on the anal- ysis of mesoscopic models for protein folding, aggregation for a more universal description of the notoriously difficult problem of protein fold- ing. In this approach

  1. Steiner Minimal Trees, Twist Angles, and the Protein Folding Problem

    E-Print Network [OSTI]

    Smith, J. MacGregor

    Steiner Minimal Trees, Twist Angles, and the Protein Folding Problem J. MacGregor Smith, Yunho Jang. These properties should be ultimately useful in the ab ini- tio protein folding prediction. Proteins 2007;66:889­ 902. VVC 2006 Wiley-Liss, Inc. Key words: Steiner trees; twist angles; protein fold- ing; side chain

  2. Author's personal copy Protein folding in confined and crowded environments

    E-Print Network [OSTI]

    Weston, Ken

    Author's personal copy Review Protein folding in confined and crowded environments Huan-Xiang Zhou protein folding in cellular environments. Theories based on considerations of excluded volumes predict disparate effects on protein folding stability for confinement and crowding: confinement can stabilize

  3. Polymer Collapse, Protein Folding, and the Percolation Threshold

    E-Print Network [OSTI]

    Meirovitch, Hagai

    Polymer Collapse, Protein Folding, and the Percolation Threshold HAGAI MEIROVITCH University (Macromolecules 1989, 22, 3986­3997) to study protein folding, where H and P are the hydrophobic and polar amino; computer simulation; collapse transition; protein folding Introduction The behavior of dilute polymer

  4. John von Neumann Institute for Computing Monte Carlo Protein Folding

    E-Print Network [OSTI]

    Hsu, Hsiao-Ping

    John von Neumann Institute for Computing Monte Carlo Protein Folding: Simulations of Met://www.fz-juelich.de/nic-series/volume20 #12;#12;Monte Carlo Protein Folding: Simulations of Met-Enkephalin with Solvent-Accessible Area difficulties in applying Monte Carlo methods to protein folding. The solvent-accessible area method, a popular

  5. COMMUNICATION Are Residues in a Protein Folding Nucleus

    E-Print Network [OSTI]

    Dai, Yang

    COMMUNICATION Are Residues in a Protein Folding Nucleus Evolutionarily Conserved? Yan Yuan Tseng is the hallmark of life. It is important to understand how protein folding and evolution influence each other in protein folding nucleus as measured by experi- mental f-value and selection pressure as measured by v

  6. Self-folding miniature elastic electric devices Shuhei Miyashita1

    E-Print Network [OSTI]

    Wood, Robert

    , inspired by Origami art work and protein folding, have been exploited for the con- struction of various folds using global heating [9]. Whitney et al developed m-scale robots based on pop- up methods [10], and Abel et al presented a theoretical fra- mework for designing pop-up parallel folds [11]. Techniques

  7. Protein Folding in Contact Map Space Eytan Domany

    E-Print Network [OSTI]

    Domany, Eytan

    Protein Folding in Contact Map Space Eytan Domany Department of Physics of Complex Systems to the free energy is unable to stabilize the native fold of a single protein against a set of carefully dimensional structure determines the biological function of a protein. The pro­ tein folding problem, i

  8. Distribution of Protein Folds in the Three Superkingdoms of Life

    E-Print Network [OSTI]

    Distribution of Protein Folds in the Three Superkingdoms of Life Yuri I. Wolf,1,4 Steven E. Brenner Pharmacology and Biological Chemistry, Northwestern University, Chicago, Illinois 60611 USA A sensitive protein-fold. In the completely sequenced genomes, folds could be automatically identified for 20%­30% of the proteins, with 3

  9. Folding simulations of small proteins Seung-Yeon Kima

    E-Print Network [OSTI]

    Lee, Jooyoung

    Folding simulations of small proteins Seung-Yeon Kima , Julian Leeb , Jooyoung Leea,* a School Abstract Understanding how a protein folds is a long-standing challenge in modern science. We have used an optimized atomistic model (united- residue force field) to simulate folding of small proteins of various

  10. Folding energy landscape and network dynamics of small globular proteins

    E-Print Network [OSTI]

    Berry, R. Stephen

    Folding energy landscape and network dynamics of small globular proteins Naoto Horia , George for review September 17, 2008) The folding energy landscape of proteins has been suggested to be funnel coordinates Proteins fold on large-dimensional energy landscapes through myriads of conformations. One energy

  11. Protein Folding in the Endoplasmic Reticulum Ineke Braakman1

    E-Print Network [OSTI]

    Hebert, Daniel N.

    Protein Folding in the Endoplasmic Reticulum Ineke Braakman1 and Daniel N. Hebert2 1 Cellular Correspondence: i.braakman@uu.nl; dhebert@biochem.umass.edu In this article, wewill cover the folding of proteins­trans isomerase families. We will conclude with the perspective of the folding protein: a comparison

  12. Structure Learning for Generative Models of Protein Fold Families

    E-Print Network [OSTI]

    Structure Learning for Generative Models of Protein Fold Families Sivaraman Balakrishnan composition of the proteins within a fold family are widely used in science and engineering. Existing composition of the proteins within a fold family provide insights into the constraints that govern structure

  13. Direct Molecular Dynamics Observation of Protein Folding Transition State Ensemble

    E-Print Network [OSTI]

    Stanley, H. Eugene

    Direct Molecular Dynamics Observation of Protein Folding Transition State Ensemble Feng Ding for the interpretation of experimental results and understanding of protein folding mechanics, which has at- tracted, 1999; Guerois and Serrano, 2000) have been proposed to predict the transition states in protein folding

  14. Folding simulations of a three-stranded antiparallel -sheet peptide

    E-Print Network [OSTI]

    Caflisch, Amedeo

    for review May 11, 2000) Protein folding is a grand challenge of the postgenomic era. In this paper, 58 in general for antiparallel -sheets with short turns. protein folding energy landscape implicit solvation model Theoretical and experimental studies have provided insights into the protein folding process (1

  15. PeriodicitiesinSequenceResidueHydropathyandtheImplicationsonProteinFolds Nancy Zhang

    E-Print Network [OSTI]

    Brutlag, Doug

    1 PeriodicitiesinSequenceResidueHydropathyandtheImplicationsonProteinFolds Nancy Zhang March, 2000 algorithms is that there are hidden variables effecting the protein folding mechanism and explain why it is crucial to a protein's fold. In section III, I will explain how the Fourier transform

  16. Polymer uncrossing and knotting in protein folding, and their role in minimal folding pathways

    E-Print Network [OSTI]

    Ali R. Mohazab; Steven S. Plotkin

    2012-11-30

    We introduce a method for calculating the extent to which chain non-crossing is important in the most efficient, optimal trajectories or pathways for a protein to fold. This involves recording all unphysical crossing events of a ghost chain, and calculating the minimal uncrossing cost that would have been required to avoid such events. A depth-first tree search algorithm is applied to find minimal transformations to fold $\\alpha$, $\\beta$, $\\alpha/\\beta$, and knotted proteins. In all cases, the extra uncrossing/non-crossing distance is a small fraction of the total distance travelled by a ghost chain. Different structural classes may be distinguished by the amount of extra uncrossing distance, and the effectiveness of such discrimination is compared with other order parameters. It was seen that non-crossing distance over chain length provided the best discrimination between structural and kinetic classes. The scaling of non-crossing distance with chain length implies an inevitable crossover to entanglement-dominated folding mechanisms for sufficiently long chains. We further quantify the minimal folding pathways by collecting the sequence of uncrossing moves, which generally involve leg, loop, and elbow-like uncrossing moves, and rendering the collection of these moves over the unfolded ensemble as a multiple-transformation "alignment". The consensus minimal pathway is constructed and shown schematically for representative cases of an $\\alpha$, $\\beta$, and knotted protein. An overlap parameter is defined between pathways; we find that $\\alpha$ proteins have minimal overlap indicating diverse folding pathways, knotted proteins are highly constrained to follow a dominant pathway, and $\\beta$ proteins are somewhere in between. Thus we have shown how topological chain constraints can induce dominant pathway mechanisms in protein folding.

  17. PERSPECTIVES Deep Earthquakes: A Fault Too Big?

    E-Print Network [OSTI]

    Stein, Seth

    PERSPECTIVES Deep Earthquakes: A Fault Too Big? Seth Stein Because deep Earth processes are inacces. Recent results for the mys- terious deep earthquakes that occur to depths greater than 600 km is that large deep earthquakes (1-3) seem to have occurred on faults larger than ex- pected from the competing

  18. INDUCTION MOTOR FAULT DIAGNOSTIC AND MONITORING METHODS

    E-Print Network [OSTI]

    Povinelli, Richard J.

    INDUCTION MOTOR FAULT DIAGNOSTIC AND MONITORING METHODS by Aderiano M. da Silva, B.S. A Thesis;i Abstract Induction motors are used worldwide as the "workhorse" in industrial applications material. However, induction motor faults can be detected in an initial stage in order to prevent

  19. Sensor Fault Diagnosis Using Principal Component Analysis 

    E-Print Network [OSTI]

    Sharifi, Mahmoudreza

    2010-07-14

    The purpose of this research is to address the problem of fault diagnosis of sensors which measure a set of direct redundant variables. This study proposes: 1. A method for linear senor fault diagnosis 2. An analysis of isolability and detectability...

  20. Physiochemical Evidence of Faulting Processes and Modeling of Fluid in Evolving Fault Systems in Southern California

    SciTech Connect (OSTI)

    Boles, James [Professor

    2013-05-24

    Our study targets recent (Plio-Pleistocene) faults and young (Tertiary) petroleum fields in southern California. Faults include the Refugio Fault in the Transverse Ranges, the Ellwood Fault in the Santa Barbara Channel, and most recently the Newport- Inglewood in the Los Angeles Basin. Subsurface core and tubing scale samples, outcrop samples, well logs, reservoir properties, pore pressures, fluid compositions, and published structural-seismic sections have been used to characterize the tectonic/diagenetic history of the faults. As part of the effort to understand the diagenetic processes within these fault zones, we have studied analogous processes of rapid carbonate precipitation (scaling) in petroleum reservoir tubing and manmade tunnels. From this, we have identified geochemical signatures in carbonate that characterize rapid CO2 degassing. These data provide constraints for finite element models that predict fluid pressures, multiphase flow patterns, rates and patterns of deformation, subsurface temperatures and heat flow, and geochemistry associated with large fault systems.

  1. Introduction to protein folding for physicists

    E-Print Network [OSTI]

    Pablo Echenique

    2007-05-13

    The prediction of the three-dimensional native structure of proteins from the knowledge of their amino acid sequence, known as the protein folding problem, is one of the most important yet unsolved issues of modern science. Since the conformational behaviour of flexible molecules is nothing more than a complex physical problem, increasingly more physicists are moving into the study of protein systems, bringing with them powerful mathematical and computational tools, as well as the sharp intuition and deep images inherent to the physics discipline. This work attempts to facilitate the first steps of such a transition. In order to achieve this goal, we provide an exhaustive account of the reasons underlying the protein folding problem enormous relevance and summarize the present-day status of the methods aimed to solving it. We also provide an introduction to the particular structure of these biological heteropolymers, and we physically define the problem stating the assumptions behind this (commonly implicit) definition. Finally, we review the 'special flavor' of statistical mechanics that is typically used to study the astronomically large phase spaces of macromolecules. Throughout the whole work, much material that is found scattered in the literature has been put together here to improve comprehension and to serve as a handy reference.

  2. Self-triggering superconducting fault current limiter

    DOE Patents [OSTI]

    Yuan, Xing (Albany, NY); Tekletsadik, Kasegn (Rexford, NY)

    2008-10-21

    A modular and scaleable Matrix Fault Current Limiter (MFCL) that functions as a "variable impedance" device in an electric power network, using components made of superconducting and non-superconducting electrically conductive materials. The matrix fault current limiter comprises a fault current limiter module that includes a superconductor which is electrically coupled in parallel with a trigger coil, wherein the trigger coil is magnetically coupled to the superconductor. The current surge doing a fault within the electrical power network will cause the superconductor to transition to its resistive state and also generate a uniform magnetic field in the trigger coil and simultaneously limit the voltage developed across the superconductor. This results in fast and uniform quenching of the superconductors, significantly reduces the burnout risk associated with non-uniformity often existing within the volume of superconductor materials. The fault current limiter modules may be electrically coupled together to form various "n" (rows).times."m" (columns) matrix configurations.

  3. Central American geologic map project

    SciTech Connect (OSTI)

    Dengo, G.

    1986-07-01

    During the Northeast Quadrant Panel meeting of the Circum-Pacific Map Project held in Mexico City, February 1985, Central American panel members proposed and adopted plans for compiling a geologic map of Central America, probably at a scale of 1:500,000. A local group with participants from each country was organized and coordinated by Rolando Castillo, director, Central American School of Geology, University of Costa Rica, for the geologic aspects, and Fernando Rudin, director, Geographic Institute of Costa Rica, for the topographic base. In 1956, the US Geological Survey published a geologic map of the region at a scale of 1:1 million. Subsequent topographic and geologic mapping projects have provided a large amount of new data. The entire area is now covered by topographic maps at a scale of 1:50,000, and these maps have been used in several countries as a base for geologic mapping. Another regional map, the Metallogenic Map of Central America (scale = 1:2 million), was published in 1969 by the Central American Research Institute for Industry (ICAITI) with a generalized but updated geologic base map. Between 1969 and 1980, maps for each country were published by local institutions: Guatemala-Belize at 1:500,000, Honduras at 1:500,000, El Salvador at 1:100,000, Nicaragua at 1:1 million, Costa Rica at 1:200,000, and Panama at 1:1 million. This information, in addition to that of newly mapped areas, served as the base for the Central American part of the Geologic-Tectonic Map of the Caribbean Region (scale = 1:2.5 million), published by the US Geological Survey in 1980, and also fro the Northeast Quadrant Maps of the Circum-Pacific Region. The new project also involves bathymetric and geologic mapping of the Pacific and Caribbean margins of the Central American Isthmus. A substantial amount of new information of the Middle America Trench has been acquired through DSDP Legs 67 and 84.

  4. Journal of Geological Society of Sri Lanka Vol. 15 (2013), 69-83 GEOTHERMAL ENERGY POTENTIAL IN SRI LANKA: A PRELIMINARY

    E-Print Network [OSTI]

    Jones, Alan G.

    2013-01-01

    Journal of Geological Society of Sri Lanka Vol. 15 (2013), 69-83 69 GEOTHERMAL ENERGY POTENTIAL faults or hot dry rock that would help geothermal energy development. Data show three regions, metamorphic terrains INTRODUCTION Geothermal energy development in Sri Lanka has been considered

  5. Two-State Folding, Folding through Intermediates, and Metastability in a Minimalistic Hydrophobic-Polar Model for Proteins

    E-Print Network [OSTI]

    Janke, Wolfhard

    parts of the sequence. Moreover, for most proteins, the folding process is relatively slow (microsecTwo-State Folding, Folding through Intermediates, and Metastability in a Minimalistic Hydrophobic-Polar Model for Proteins Stefan Schnabel,* Michael Bachmann, and Wolfhard Janke Institut fu¨r Theoretische

  6. Dr Eugenio Carminati Associate Professor (Structural Geology)

    E-Print Network [OSTI]

    Dr Eugenio Carminati Associate Professor (Structural Geology) room 216 ph: +39 0649914950 fax a degree in Geological Sciences at the University of Milano with a thesis in Structural Geology. I achieved. I'm fellow of the Geological Society of Italy and of the American Geophysical union. Between 2004

  7. 242 Department of Geology Undergraduate Catalogue 201415

    E-Print Network [OSTI]

    242 Department of Geology Undergraduate Catalogue 2014­15 Department of Geology Chairperson: Abdel. Assistant Instructor: P Hajj-Chehadeh, Abdel-Halim The Department of Geology offers programs leading to the degree of Bachelor of Science in Geology, and Master of Science degrees in certain areas of the vast

  8. Geology of the Shenandoah National Park Region

    E-Print Network [OSTI]

    Eaton, L. Scott

    1 Geology of the Shenandoah National Park Region 39th Annual Virginia Geological Field Conference October 2nd - 3rd, 2009 Scott Southworth U. S. Geological Survey L. Scott Eaton James Madison University Meghan H. Lamoreaux College of William & Mary William C. Burton U. S. Geological Survey Christopher M

  9. Assessment Report, Department of Geology August, 2012

    E-Print Network [OSTI]

    Bogaerts, Steven

    Assessment Report, Department of Geology August, 2012 1. Learning Goals ALL students in geology, classification schemes, geologic history and processes, and the structure of the Earth. 3. demonstrate an understanding of the variability, complexity, and interdependency of processes within geologic systems. 4. use

  10. Reprinted February 2003 4-H Geology

    E-Print Network [OSTI]

    Tullos, Desiree

    4-H 340 Reprinted February 2003 4-H Geology Member Guide OREGON STATE UNIVERSITY EXTENSION SERVICE #12;Contents 4-H Geology Project 3 Project Recommendations 3 Books on Geology 4 Trip Planning 4 Contests 7 Identification of Rocks and Minerals 7 Physical Properties of Minerals 8 Generalized Geologic

  11. Geological Visualization Tools and Structural Geology Geologists use several visualization tools to understand rock outcrop

    E-Print Network [OSTI]

    Li, X. Rong

    Geological Visualization Tools and Structural Geology Geologists use several visualization tools to understand rock outcrop relationships, regional patterns and subsurface geology in 3D and 4D. Geological maps to studying geologic maps. Cross sections are vertical "slices" into the earth that are used to interpret

  12. BACHELOR OF SCIENCE IN ENVIRONMENTAL GEOLOGY DEPARTMENT OF GEOLOGY AND PLANETARY SCIENCE

    E-Print Network [OSTI]

    Jiang, Huiqiang

    BACHELOR OF SCIENCE IN ENVIRONMENTAL GEOLOGY DEPARTMENT OF GEOLOGY AND PLANETARY SCIENCE WWW.GEOLOGY" for a complete range of advising information plus the latest Environmental Geology requirements. CORE COURSES (check each as completed): (30 credits) ____Choose one of the following introductory geology classes

  13. Effects of Familial Alzheimer's Disease Mutations on the Folding Nucleation of the Amyloid ?-Protein

    E-Print Network [OSTI]

    2008-01-01

    nucleation of amyloid ?-protein folding. Proc. Natl Acad.dynamics method for protein folding. Chem. Phys. Lett. 314,Atomic simulations of protein folding using the replica

  14. Signatures of the protein folding pathway in two-dimensional ultraviolet spectroscopy

    E-Print Network [OSTI]

    Jiang, J; Jiang, J; Lai, Z; Wang, J; Wang, J; Mukamel, S

    2014-01-01

    2) Dobson, C. M. Protein Folding and Misfolding. Naturethe Complexity of Protein Folding. Curr. Opin. Struct. Biol.Signatures of the Protein Folding Pathway in Two-Dimensional

  15. Energy landscapes for protein folding, binding, and aggregation : simple funnels and beyond

    E-Print Network [OSTI]

    Cho, Samuel Sung-Il

    2007-01-01

    coordinates capture protein folding on smooth landscapes.in the Prediction of Protein Folding Kinetics. Proc. Natl.Landscapes for Protein Folding, Binding, and Aggregation:

  16. Topology, frustration, folding and function of the inflammatory cytokine Interleukin-1[beta

    E-Print Network [OSTI]

    Capraro, Dominique T.

    2008-01-01

    the features of protein folding, where proteins with manychain connectivity on protein folding (53). Application ofhave gone beyond protein folding and have characterized

  17. Microfluidic advantage : novel techniques for protein folding and oxygen control in cell cultures

    E-Print Network [OSTI]

    Polinkovsky, Mark E.; Polinkovsky, Mark E.

    2012-01-01

    Novel Techniques for Protein Folding and Oxygen Control inTemperature Jump System to Study Fast Protein FoldingNovel Techniques for Protein Folding and Oxygen Control in

  18. Carbon-deuterium bonds as an infrared probe of protein dynamics, local electrostatics and folding

    E-Print Network [OSTI]

    Sagle, Laura B.

    2006-01-01

    and Englander, W. S. , Protein Folding: A Stepwise AssemblyEnglander, S. W. , Protein Folding Intermediates – NativeR. L. , How Does Protein Folding Get Started? Trends

  19. Beyond the native state: Exploring the role of partially folded conformations on the protein energy landscape

    E-Print Network [OSTI]

    Connell, Katelyn Blair

    2010-01-01

    Unifying features in protein- folding mechanisms. Proc NatlDramatic acceleration of protein folding by stabilization ofL. & Englander, S. W. (1995). Protein folding intermediates:

  20. The folding energy landscape of Cytochrome c : theoretical and experimental investigations

    E-Print Network [OSTI]

    Weinkam, Patrick

    2009-01-01

    Chemical Frustration in the Protein Folding Landscape: GrandChemical Frustration in the Protein Folding Landscape: GrandEnzyme Catalysis and Protein Folding (Freeman, New York). [

  1. A biochemical analysis of the complex protein folding machinery in algal chloroplasts

    E-Print Network [OSTI]

    Tran, Miller

    2012-01-01

    1992). "Hsp90 chaperones protein folding in vitro." NatureMolecular chaperones in protein folding and proteostasis."analysis of the complex protein folding machinery in algal

  2. Amyloid ?-Protein Monomer Folding: Free-Energy Surfaces Reveal Alloform-Specific Differences

    E-Print Network [OSTI]

    Yang, M; Teplow, DB

    2008-01-01

    study of amyloid ?-protein folding and oligomerization.Elucidating amyloid ?-protein folding and assembly: A multi-of Alzheimer's amyloid ?-protein folding and assembly. Curr.

  3. Geologic and tectonic characteristics of rockbursts

    SciTech Connect (OSTI)

    Adushkin, V.V. [Academy of Sciences, Moscow (Russian Federation). Inst. for Dynamics of the Geospheres; Charlamov, V.A.; Kondratyev, S.V.; Rybnov, Y.S.; Shemyakin, V.M.; Sisov, I.A.; Syrnikov, N.M.; Turuntaev, S.B.; Vasilyeva, T.V. [Lawrence Livermore National Lab., CA (United States)

    1995-06-01

    The modern mining enterprises have attained such scales of engineering activity that their direct influence to a rock massif and in series of cases to the region seismic regime doesn`t provoke any doubts. Excavation and removal of large volumes of rock mass, industrial explosions and other technological factors during long time can lead to the accumulation of man-made changes in rock massifs capable to cause catastrophic consequences. The stress state changes in considerable domains of massif create dangerous concentration of stresses at large geological heterogeneities - faults localized in the mining works zone. External influence can lead in that case to such phenomena as tectonic rockbursts and man-made earthquakes. The rockbursts problem in world mining practice exists for more than two hundred years. So that its actuality not only doesn`t decrease but steadily mounts up as due to the mining works depth increase, enlargement of the useful minerals excavations volumes as due to the possibility of safe use of the rock massif potential energy for facilitating the mastering of the bowels of the Earth and for making that more cheap. The purpose of present work is to study the engineering activity influence to processes occurring in the upper part of Earth crust and in particular in a rock massif. The rock massif is treated in those studies as a geophysical medium - such approach takes into account the presence of block structure of medium and the continuous exchange of energy between parts of that structure. The idea ``geophysical medium`` is applied in geophysics sufficiently wide and stresses the difference of actual Earth crust and rock massifs from the continuous media models discussed in mechanics.

  4. Fault-Tolerant Exact State Transmission

    E-Print Network [OSTI]

    Zhao-Ming Wang; Lian-Ao Wu; Michele Modugno; Wang Yao; Bin Shao

    2012-05-02

    We show that a category of one-dimensional XY-type models may enable high-fidelity quantum state transmissions, regardless of details of coupling configurations. This observation leads to a fault- tolerant design of a state transmission setup. The setup is fault-tolerant, with specified thresholds, against engineering failures of coupling configurations, fabrication imperfections or defects, and even time-dependent noises. We propose the implementation of the fault-tolerant scheme using hard-core bosons in one-dimensional optical lattices.

  5. Cooperative application/OS DRAM fault recovery.

    SciTech Connect (OSTI)

    Ferreira, Kurt Brian; Bridges, Patrick G. (University of New Mexico, Albuquerque, NM); Heroux, Michael Allen; Hoemmen, Mark; Brightwell, Ronald Brian

    2012-05-01

    Exascale systems will present considerable fault-tolerance challenges to applications and system software. These systems are expected to suffer several hard and soft errors per day. Unfortunately, many fault-tolerance methods in use, such as rollback recovery, are unsuitable for many expected errors, for example DRAM failures. As a result, applications will need to address these resilience challenges to more effectively utilize future systems. In this paper, we describe work on a cross-layer application/OS framework to handle uncorrected memory errors. We illustrate the use of this framework through its integration with a new fault-tolerant iterative solver within the Trilinos library, and present initial convergence results.

  6. Fault Detection and Diagnosis in Building HVAC Systems

    E-Print Network [OSTI]

    Najafi, Massieh

    2010-01-01

    of outside air condition, occupant behavior, and buildingair condition and occupant behavior) and fault condition (

  7. Powering Triton's recent geological activity by obliquity tides: Implications for Pluto geology

    E-Print Network [OSTI]

    Nimmo, F.; Spencer, J.R.

    2015-01-01

    Strom, R. G. , 1995. The geology of Triton. In: Cruikshank,layering and instability. Geology 21, 299–302. Schenk, P.generating the surface geology and heat flow on Enceladus.

  8. GEOLOGY, September 2011 815 G32136 2nd pages

    E-Print Network [OSTI]

    Kaus, Boris

    .g., Kaus et al., 2008). The Zagros fold belt of Iran constitutes a classical example of such a folded belt of the Zagros fold belt is a consistent spacing of folds with a wavelength (dom ) of 14 ± 3 km. These folds. This confirms that detachment folding rather than thrusting is the dominant deformation mode in the Zagros fold

  9. Initiation of the San Jacinto Fault and its Interaction with the San Andreas Fault: Insights from Geodynamic Modeling

    E-Print Network [OSTI]

    Liu, Mian

    Initiation of the San Jacinto Fault and its Interaction with the San Andreas Fault: Insights from Geodynamic Modeling QINGSONG LI 1,2 and MIAN LIU 1 Abstract--The San Andreas Fault (SAF) is the Pacific is accommodated by the San Jacinto Fault (SJF). Here we investigate the initiation of the SJF and its interaction

  10. 1. Detect ground faults in PV arrays mounted on the roofs of 2. Interrupt the fault current

    E-Print Network [OSTI]

    Johnson, Eric E.

    1. Detect ground faults in PV arrays mounted on the roofs of dwellings 2. Interrupt the fault current 3. Indicate that a ground fault had occurred 4. Disconnect the faulted part of the PV array 5. "Crowbar" (short-circuit) the PV array The original GFPD prototype was developed in two versions that were

  11. The propagation and linkage of normal faults: Insights from the Strathspey-Brent-Statfjord fault array, northern North Sea

    E-Print Network [OSTI]

    McLeod, Aileen E.

    2001-01-01

    Through examination of the scaling relations of faults and the use of seismic stratigraphic techniques,

  12. Inferring the Rate-Length Law of Protein Folding

    E-Print Network [OSTI]

    Lane, Thomas J

    2013-01-01

    We investigate the rate-length scaling law of protein folding, a key undetermined scaling law in the analytical theory of protein folding. We demonstrate that chain length is a dominant factor determining folding times, and that the unambiguous determination of the way chain length corre- lates with folding times could provide key mechanistic insight into the folding process. Four specific proposed laws (power law, exponential, and two stretched exponentials) are tested against one an- other, and it is found that the power law best explains the data. At the same time, the fit power law results in rates that are very fast, nearly unreasonably so in a biological context. We show that any of the proposed forms are viable, conclude that more data is necessary to unequivocally infer the rate-length law, and that such data could be obtained through a small number of protein folding experiments on large protein domains.

  13. An energy landscape theory for cotranslational protein folding

    E-Print Network [OSTI]

    Tourigny, David S

    2013-01-01

    Energy landscape theory describes how a full-length protein can attain its native fold by sampling only a tiny fraction of all possible structures. Although protein folding is now understood to be concomitant with synthesis on the ribosome, there have been few attempts to modify energy landscape theory by accounting for cotranslational folding. This paper introduces a model for cotranslational folding that leads to a natural definition of a nested energy landscapes. By applying concepts drawn from submanifold differential geometry, the dynamics of protein folding on the ribosome can be explored in a quantitative manner and conditions on the nested potential energy landscapes for a good cotranslational folder are obtained. A generalisation of diffusion rate theory using van Kampen's technique of composite stochastic processes is then used to account for entropic contributions and the effects of variable translation rates on cotranslational folding. This stochastic approach agrees well with experimental results...

  14. Dodging the crisis of folding proteins with knots

    E-Print Network [OSTI]

    Joanna I. Su?kowska; Piotr Su?kowski; José N. Onuchic

    2009-12-30

    Proteins with nontrivial topology, containing knots and slipknots, have the ability to fold to their native states without any additional external forces invoked. A mechanism is suggested for folding of these proteins, such as YibK and YbeA, which involves an intermediate configuration with a slipknot. It elucidates the role of topological barriers and backtracking during the folding event. It also illustrates that native contacts are sufficient to guarantee folding in around 1-2% of the simulations, and how slipknot intermediates are needed to reduce the topological bottlenecks. As expected, simulations of proteins with similar structure but with knot removed fold much more efficiently, clearly demonstrating the origin of these topological barriers. Although these studies are based on a simple coarse-grained model, they are already able to extract some of the underlying principles governing folding in such complex topologies.

  15. Accordian-folded boot shield for flexible swivel connection

    DOE Patents [OSTI]

    Hoh, Joseph C. (Naperville, IL)

    1986-01-01

    A flexible swivel boot connector for connecting a first boot shield section to a second boot shield section, both first and second boot sections having openings therethrough, the second boot section having at least two adjacent accordian folds at the end having the opening, the second boot section being positioned through the opening of the first boot section such that a first of the accordian folds is within the first boot section and a second of the accordian folds is outside of the first boot, includes first and second annular discs, the first disc being positioned within and across the first accordian fold, the second disc being positioned within and across the second accordian fold, such that the first boot section is moveably and rigidly connected between the first and second accordian folds of the second boot section.

  16. Detachment Faulting and Geothermal Resources - An Innovative...

    Open Energy Info (EERE)

    Resources - An Innovative Integrated Geological and Geophysical Investigation in Fish Lake Valley, Nevada Geothermal Project Jump to: navigation, search Last modified on...

  17. pre or co-requisite Geology Course Prerequisite Chart

    E-Print Network [OSTI]

    Thaxton, Christopher S.

    pre or co-requisite Geology Course Prerequisite Chart 1101, 1102, 1103,1104, 1105 2250 3160 2500 hours geology junior standing; six hours geology depends on course senior standing, permission hours geology six hours geology Evolution of the Earth Geophysics Physical Geology , Historical Geology

  18. Structure of the eastern Red Rocks and Wind Ridge thrust faults, Wyoming: how a thrust fault gains displacement along strike 

    E-Print Network [OSTI]

    Huntsman, Brent Stanley

    1983-01-01

    OF FIELD MAPPING Methods . Thrust Faults . The Wind Ridge Thrust Fault System The Red Rocks Thrust Fault System CLAY MODEL STUDIES Purpose and Description Model Results DISCUSSION OF RESULTS Kinematics of the Red Rocks Thrust Fault Termination... . Kinematics of the Southern Wind Ridge Thrust Fault . . . A Conceptual Model of the Red Rocks Thrust Fault Termination Implications of the Red Rocks Fault Termination . . . . . . Page V1 V11 1X X1 X11 7 9 17 18 18 21 24 27 35 35 38 49 49...

  19. When pigs fly: a study of computer generated paper folding 

    E-Print Network [OSTI]

    Nitsch, Elizabeth Jeanette

    2009-05-15

    of folds form bases, or starting shapes, which are common to the construction of more than one figure. The classic, or best-known bases, are the kite base, fish base, bird base, and frog base [5] (Fig. 5). 4 Fig. 4. Basic origami folds... suitable for everything from clothing and architecture to lanterns, kites, and, of course, origami [11]. 6 HISTORY OF ORIGAMI Given that paper originated in China, many historians trace the development of artistic paper folding to that country...

  20. A connecting network with fault tolerance capabilities

    SciTech Connect (OSTI)

    Ciminiera, L.; Serra, A.

    1986-06-01

    A new multistage interconnection network is presented in this paper. It is able to handle the communications between the connected devices correctly, even in the presence of fault(s) in the network. This goal is achieved by using redundant paths with a fast procedure able to dynamically reroute the message. It is also shown that the rerouting properties are still valid when broadcasting transmission is used.

  1. West Virginia University Geology 404, Geology Field Camp

    E-Print Network [OSTI]

    Kammer, Thomas

    .geo.wvu.edu/~kammer/geol404.htm Format: Five weeks of geologic field work in the Northern Rocky Mountains. Field areas, Wyoming, Bighorn Mountains, Wyoming, Yellowstone National Park, Grand Teton National Park, and Southwest will include the Black Hills, Big Horn Mountains, Yellowstone National Park, Grand Teton National Park

  2. A dynamical approach to protein folding

    E-Print Network [OSTI]

    Alessandro Torcini; Roberto Livi; Antonio Politi

    2001-03-13

    In this paper we show that a dynamical description of the protein folding process provides an effective representation of equilibrium properties and it allows for a direct investigation of the mechanisms ruling the approach towards the native configuration. The results reported in this paper have been obtained for a two-dimensional toy-model of amino acid sequences, whose native configurations were previously determined by Monte Carlo techniques. The somewhat controversial scenario emerging from the comparison among various thermodynamical indicators is definitely better resolved relying upon a truly dynamical description, that points out the crucial role played by long-range interactions in determining the characteristic step-wise evolution of ``good'' folders to their native state. It is worth stressing that this dynamical scenario is consistent with the information obtained by exploring the energy landscapes of different sequences. This suggests that even the identification of more efficient ``static'' indicators should take into account the peculiar features associated with the complex ``orography'' of the landscape.

  3. VERIFI code optimization yields three-fold increase in engine...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    for parallel readwrite processes. (Click image to view larger.) VERIFI code optimization yields three-fold increase in engine simulation speed By Greg Cunningham * May 7,...

  4. New Crystal Structures Lift Fog around Protein Folding

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    New Crystal Structures Lift Fog around Protein Folding Print Nature's proteins set a high bar for nanotechnology. Macromolecules forged from peptide chains of amino acids, these...

  5. Hundred-Fold Improvement in Temperature Mapping Reveals the Stresses...

    Office of Science (SC) Website

    Hundred-Fold Improvement in Temperature Mapping Reveals the Stresses Inside Tiny Transistors Basic Energy Sciences (BES) BES Home About Research Facilities Science Highlights...

  6. Protein folding: A complex potential for the driving force

    E-Print Network [OSTI]

    Chekmarev, Sergei F

    2013-01-01

    Using the Helmholtz decomposition of the vector field of folding fluxes in a reduced space of collective variables, a potential of the driving force for protein folding is determined. The potential has two components and can be written as a complex function. One component is responsible for the source and sink of the folding flows (representing, respectively, the unfolded states and the native state of the protein), and the other accounts for the vorticity of the flow that is produced at the boundaries of the main flow by the contact of the moving folding "fluid" with the quiescent surroundings. The theoretical consideration is illustrated by calculations for a model $\\beta$-hairpin protein.

  7. Thermodynamics of protein folding: a random matrix formulation

    E-Print Network [OSTI]

    Pragya Shukla

    2010-10-16

    The process of protein folding from an unfolded state to a biologically active, folded conformation is governed by many parameters e.g the sequence of amino acids, intermolecular interactions, the solvent, temperature and chaperon molecules. Our study, based on random matrix modeling of the interactions, shows however that the evolution of the statistical measures e.g Gibbs free energy, heat capacity, entropy is single parametric. The information can explain the selection of specific folding pathways from an infinite number of possible ways as well as other folding characteristics observed in computer simulation studies.

  8. MICROFLUIDIC MIXERS FOR THE INVESTIGATION OF PROTEIN FOLDING...

    Office of Scientific and Technical Information (OSTI)

    Conference: MICROFLUIDIC MIXERS FOR THE INVESTIGATION OF PROTEIN FOLDING USING SYNCHROTRON RADIATION CIRCULAR DICHROISM SPECTROSCOPY Citation Details In-Document Search Title:...

  9. MICROFLUIDIC MIXERS FOR THE INVESTIGATION OF PROTEIN FOLDING...

    Office of Scientific and Technical Information (OSTI)

    MICROFLUIDIC MIXERS FOR THE INVESTIGATION OF PROTEIN FOLDING USING SYNCHROTRON RADIATION CIRCULAR DICHROISM SPECTROSCOPY Kane, A; Hertzog, D; Baumgartel, P; Lengefeld, J; Horsley,...

  10. Folded inflatable protective device and method for making same

    DOE Patents [OSTI]

    Behr, V.L.; Nelsen, J.M.; Gwinn, K.W.

    1998-10-20

    An apparatus and method are disclosed for making an inflatable protective device made of lightweight material that can withstand the initial stress from inflation and enhance radial inflation. The device includes a cushion and an inflator port. The invention further includes several stacks of folded cushion material including a combination of full-width stacks and half-width stacks: a first full-width stack defined by one or more fan folds in a first lateral half of the cushion wherein the folds are substantially centered above a first center line and are substantially over the inflator port; a second full-width stack defined by one or more fan folds in a second lateral half of the cushion wherein the folds are substantially centered above the first center line and substantially over the inflator port in the first full-width stack; a first half-width stack defined by a plurality of fan folds in the bottom of the cushion where neither edge of each fold extends substantially over the second center line; and a second half-width stack defined by a plurality of fan folds in the top of the cushion wherein neither edge of each fold extends substantially over the second center line. 22 figs.

  11. Folded inflatable protective device and method for making same

    DOE Patents [OSTI]

    Behr, Vance L. (Albuquerque, NM); Nelsen, James M. (Albuquerque, NM); Gwinn, Kenneth W. (Cedar Crest, NM)

    1998-01-01

    An apparatus and method for making an inflatable protective device made of lightweight material that can withstand the initial stress from inflation and enhance radial inflation. The device includes a cushion and an inflator port. The invention further includes several stacks of folded cushion material including a combination of full-width stacks and half-width stacks: a first full-width stack defined by one or more fan folds in a first lateral half of the cushion wherein the folds are substantially centered above a first center line and are substantially over the inflator port; a second full-width stack defined by one or more fan folds in a second lateral half of the cushion wherein the folds are substantially centered above the first center line and substantially over the inflator port in the first full-width stack; a first half-width stack defined by a plurality of fan folds in the bottom of the cushion where neither edge of each fold extends substantially over the second center line; and a second half-width stack defined by a plurality of fan folds in the top of the cushion wherein neither edge of each fold extends substantially over the second center line.

  12. Fault-related CO2 degassing, geothermics, and fluid flow in southern California basins---Physiochemical evidence and modeling

    SciTech Connect (OSTI)

    Boles, James R.; Garven, Grant

    2015-08-04

    Our studies have had an important impact on societal issues. Experimental and field observations show that CO2 degassing, such as might occur from stored CO2 reservoir gas, can result in significant stable isotopic disequilibrium. In the offshore South Ellwood field of the Santa Barbara channel, we show how oil production has reduced natural seep rates in the area, thereby reducing greenhouse gases. Permeability is calculated to be ~20-30 millidarcys for km-scale fault-focused fluid flow, using changes in natural gas seepage rates from well production, and poroelastic changes in formation pore-water pressure. In the Los Angeles (LA) basin, our characterization of formation water chemistry, including stable isotopic studies, allows the distinction between deep and shallow formations waters. Our multiphase computational-based modeling of petroleum migration demonstrates the important role of major faults on geological-scale fluid migration in the LA basin, and show how petroleum was dammed up against the Newport-Inglewood fault zone in a “geologically fast” interval of time (less than 0.5 million years). Furthermore, these fluid studies also will allow evaluation of potential cross-formational mixing of formation fluids. Lastly, our new study of helium isotopes in the LA basin shows a significant leakage of mantle helium along the Newport Inglewood fault zone (NIFZ), at flow rates up to 2 cm/yr. Crustal-scale fault permeability (~60 microdarcys) and advective versus conductive heat transport rates have been estimated using the observed helium isotopic data. The NIFZ is an important deep-seated fault that may crosscut a proposed basin decollement fault in this heavily populated area, and appears to allow seepage of helium from the mantle sources about 30 km beneath Los Angeles. The helium study has been widely cited in recent weeks by the news media, both in radio and on numerous web sites.

  13. Geological input to reservoir simulation, Champion Field, offshore Brunei

    SciTech Connect (OSTI)

    Carter, R.; Salahudin, S.; Ho, T.C.

    1994-07-01

    Brunei Shell Petroleum's giant Champion field is in a mature stage of development with about 23 yr of production history to date. The field comprises a complex sequence of Miocene shallow marine and deltaic layered clastic reservoirs cut by numerous growth faults. This study was aimed at providing a quantified estimate of the effect of lateral and vertical discontinuities within the I and J reservoirs on the recovery for both depletion drive and in a waterflood, with a view to identifying the optimal method of completing the development of the oil reserves in this area. Geological input to the ECLIPSE simulator was aimed at quantifying two key parameters: (1) STOIIP connected to the well bore and (2) permeability contrast. Connected STOIIP is a function of the domain size of interconnected sand bodies, and this parameter was quantified by the use of detailed sedimentology resulting in sand-body facies maps for each reservoir sublayer. Permeability contrast was quantified by using a wireline-log based algorithm, calibrated against core data, which improved the existing accuracy of permeability estimates in this part of the field. Results of simulation runs illustrate the importance of quantifying geologic heterogeneity and provide valuable information for future field development planning.

  14. A geological fingerprint of low-viscosity fault fluids mobilized during an earthquake

    E-Print Network [OSTI]

    Brodsky, Emily E.; Rowe, Christie D.; Moore, J. Casey; Meneghini, Francesca

    2009-01-01

    Principles of Physical Sedimentology, George Allen andCalifornia, paper presented at Sedimentology of Gravels andcoarse-grained sediments, Sedimentology, 22(2), 157 – 204.

  15. Geologic And Geophysical Evidence For Intra-Basin And Footwall Faulting At

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTION J APPENDIX ECoopButtePowerEdistoWhiskeyFootprintGEXAGeminiEnergy InformationGeographicDataDixie

  16. Public Geology at Griffith Park in Los Angeles: A Sample Teachers’ Guide

    E-Print Network [OSTI]

    Helman, Daniel S

    2012-01-01

    Rockwell, 2000; Treiman, 2000). The Raymond Fault, another major fault, was responsible for the 1988

  17. Analysis of Potential Leakage Pathways and Mineralization within Caprocks for Geologic Storage of CO(sub 2}

    SciTech Connect (OSTI)

    Evans, James

    2012-11-30

    We used a multifaceted approach to investigate the nature of caprocks above, and the interface between, reservoir-­?quality rocks that might serve as targets for carbon storage. Fieldwork in southeastern Utah examined the regional-­? to m-­?scale nature of faults and fractures across the sedimentiological interfaces. We also used microscopic analyses and mechanical modeling to examine the question as to how the contacts between units interact, and how fractures may allow fluids to move from reservoirs to caprock. Regional-­?scale analyses using ASTER data enabled us to identify location of alteration, which led to site-­?specific studies of deformation and fluid flow. In the Jurassic Carmel Formation, a seal for the Navajo Sandstone, we evaluated mesoscale variability in fracture density and morphology and variability in elastic moduli in the Jurassic Carmel Formation, a proposed seal to the underlying Navajo Sandstone for CO{sub 2} geosequestration. By combining mechano-­?stratigraphic outcrop observations with elastic moduli derived from wireline log data, we characterize the variability in fracture pattern and morphology with the observed variability in rock strength within this heterolithic top seal. Outcrop inventories of discontinuities show fracture densities decrease as bed thickness increases and fracture propagation morphology across lithologic interfaces vary with changing interface type. Dynamic elastic moduli, calculated from wireline log data, show that Young’s modulus varies by up to 40 GPa across depositional interfaces, and by an average of 3 GPa across the reservoir/seal interface. We expect that the mesoscale changes in rock strength will affect the distributions of localized stress and thereby influence fracture propagation and fluid flow behavior within the seal. These data provide a means to closely tie outcrop observations to those derived from subsurface data and estimates of subsurface rock strength. We also studied damage zones associated normal faults in the Permian Cedar Mesa Sandstone, southeastern Utah. These faults are characterized by a single slip surfaces and damage zones containing deformation bands, veins, and joints. Field observations include crosscutting relationships, permeability increase, rock strength decrease, and ultraviolet light induced mineral fluorescence within the damage zone. These field observations combined with the interpreted paragenetic sequence from petrographic analysis, suggests a deformation history of reactivation and several mineralization events in an otherwise low-­?permeability fault. All deformation bands and veins fluoresce under ultraviolet light, suggesting connectivity and a shared mineralization history. Pre-­?existing deformation features act as loci for younger deformation and mineralization events, this fault and its damage zone illustrate the importance of the fault damage zone to subsurface fluid flow. We model a simplified stress history in order to understand the importance of rock properties and magnitude of tectonic stress on the deformation features within the damage zone. The moderate confining pressures, possible variations in pore pressure, and the porous, fine-­?grained nature of the Cedar Mesa Sandstone results in a fault damage zone characterized by enhanced permeability, subsurface fluid flow, and mineralization. Structural setting greatly influences fracture spacing and orientation. Three structural settings were examined and include fault proximity, a fold limb of constant dip, and a setting proximal to the syncline hinge. Fracture spacing and dominant fracture orientation vary at each setting and distinctions between regional and local paleo-­?stress directions can be made. Joints on the fold limb strike normal to the fold axis/bedding and are interpreted to be sub-­?parallel to the maximum regional paleo-­?stress direction as there is no fold related strain. Joints proximal to faults and the syncline hinge may have formed under local stress conditions associated with folding and faulting, and

  18. www.geology.pdx.edu Undergraduate Degrees Offered

    E-Print Network [OSTI]

    , geomorphology, geomechanics, engineering geology, and teaching and learning. e PSU program serves geology majors Glaciology Geomechanics Environmental and engineering geology K-12 education In addition to their work

  19. Why Geology Matters: Decoding the Past, Anticipating the Future

    E-Print Network [OSTI]

    Anderson, Byron P.

    2011-01-01

    Review: Why Geology Matters: Decoding the Past, AnticipatingUSA Macdougall, Doug. Why Geology Matters: Decoding theE-book available. Why Geology Matters pursues two goals: to

  20. Risk assessment framework for geologic carbon sequestration sites

    E-Print Network [OSTI]

    Oldenburg, C.

    2010-01-01

    Framework for geologic carbon sequestration risk assessment,for geologic carbon sequestration risk assessment, Energyfor Geologic Carbon Sequestration, Int. J. of Greenhouse Gas

  1. Certification Framework Based on Effective Trapping for Geologic Carbon Sequestration

    E-Print Network [OSTI]

    Oldenburg, Curtis M.

    2009-01-01

    workshop on geologic carbon sequestration, 2002. Benson,verification of geologic carbon sequestration, Geophys. Res.CO 2 from geologic carbon sequestration sites, Vadose Zone

  2. GEOLOGY, February 2009 155 INTRODUCTION

    E-Print Network [OSTI]

    Huybers, Peter

    GEOLOGY, February 2009 155 INTRODUCTION Polar layered deposits (PLD)--stratigraphic sequences revealed a more complex stratigraphy, which has also been hypothesized to contain orbital features (Laskar signal, we construct a model of the north PLD (NPLD) stratigraphy from space- craft images, measure

  3. GEOLOGY, April 2011 315 INTRODUCTION

    E-Print Network [OSTI]

    Stern, Robert J.

    GEOLOGY, April 2011 315 INTRODUCTION The Gulf of Mexico opened as the western- most arm of). In spite of this general understanding about when and how it opened, the Gulf of Mexico is a rare example transitional crust thought to have formed during Gulf of Mexico opening (Dobson and Buffler, 1997; Harry

  4. Geological Characterization of California's Offshore

    E-Print Network [OSTI]

    for the various data generated by the West Coast Regional Carbon Sequestration Partnership. The project's goals are to: · Perform a preliminary geologic characterization of the carbon dioxide sequestration of carbon sequestration potential. · For select formations previously studied in the Southern Sacramento

  5. Two-State Folding, Folding through Intermediates, and Metastability in a Minimalistic Hydrophobic-Polar Model for Proteins

    E-Print Network [OSTI]

    Stefan Schnabel; Michael Bachmann; Wolfhard Janke

    2007-10-24

    Within the frame of an effective, coarse-grained hydrophobic-polar protein model, we employ multicanonical Monte Carlo simulations to investigate free-energy landscapes and folding channels of exemplified heteropolymer sequences, which are permutations of each other. Despite the simplicity of the model, the knowledge of the free-energy landscape in dependence of a suitable system order parameter enables us to reveal complex folding characteristics known from real bioproteins and synthetic peptides, such as two-state folding, folding through weakly stable intermediates, and glassy metastability.

  6. Coseismic fault-related fold model, growth structure, and the historic multisegment blind thrust earthquake on the

    E-Print Network [OSTI]

    Mueller, Karl

    [Philip and Meghraoui, 1983; Rockwell et al., 1984, 1988; Bullard and Lettis, 1993; Molnar et al., 1994

  7. Fault-tolerant Sensor Network based on Fault Evaluation Matrix and Compensation for Intermittent Observation

    E-Print Network [OSTI]

    Fault-tolerant Sensor Network based on Fault Evaluation Matrix and Compensation for Intermittent-tolerant sensor network configuration problem for a target navigation. A sensor network system consists of many sensor nodes and its network connections. Each sensor node can exchange information by wireless

  8. Realization of User Level Fault Tolerant Policy Management through a Holistic Approach for Fault Correlation

    SciTech Connect (OSTI)

    Park, Byung H [ORNL; Naughton, III, Thomas J [ORNL; Agarwal, Pratul K [ORNL; Bernholdt, David E [ORNL; Geist, Al [ORNL; Tippens, Jennifer L [ORNL

    2011-01-01

    Many modern scientific applications, which are designed to utilize high performance parallel com- puters, occupy hundreds of thousands of computational cores running for days or even weeks. Since many scien- tists compete for resources, most supercomputing centers practice strict scheduling policies and perform meticulous accounting on their usage. Thus computing resources and time assigned to a user is considered invaluable. However, most applications are not well prepared for un- foreseeable faults, still relying on primitive fault tolerance techniques. Considering that ever-plunging mean time to interrupt (MTTI) is making scientific applications more vulnerable to faults, it is increasingly important to provide users not only an improved fault tolerant environment, but also a framework to support their own fault tolerance policies so that their allocation times can be best utilized. This paper addresses a user level fault tolerance policy management based on a holistic approach to digest and correlate fault related information. It introduces simple semantics with which users express their policies on faults, and illustrates how event correlation techniques can be applied to manage and determine the most preferable user policies. The paper also discusses an implementation of the framework using open source software, and demonstrates, as an example, how a molecular dynamics simulation application running on the institutional cluster at Oak Ridge National Laboratory benefits from it.

  9. Collateral damage: Evolution with displacement of fracture distribution and secondary fault strands in fault

    E-Print Network [OSTI]

    Savage, Heather M.

    Collateral damage: Evolution with displacement of fracture distribution and secondary fault strands in fault damage zones Heather M. Savage1,2 and Emily E. Brodsky1 Received 22 April 2010; revised 10 of fracture distributions as a function of displacement to determine whether damage around small and large

  10. Fault Detection and Load Distribution for the Wind Farm Challenge

    SciTech Connect (OSTI)

    Borchehrsen, Anders B.; Larsen, Jesper A.; Stoustrup, Jakob

    2014-08-24

    In this paper a fault detection system and a fault tolerant controller for a wind farm model. The wind farm model used is the one proposed as a public challenge. In the model three types of faults are introduced to a wind farm consisting of nine turbines. A fault detection system designed, by taking advantage of the fact that within a wind farm several wind turbines will be operating under all most identical conditions. The turbines are then grouped, and then turbines within each group are used to generate residuals for turbines in the group. The generated residuals are then evaluated using dynamical cumulative sum. The designed fault detection system is cable of detecting all three fault types occurring in the model. But there is room for improving the fault detection in some areas. To take advantage of the fault detection system a fault tolerant controller for the wind farm has been designed. The fault tolerant controller is a dispatch controller which is estimating the possible power at each individual turbine and then setting the reference accordingly. The fault tolerant controller has been compared to a reference controller. And the comparison shows that the fault tolerant controller performance better in all measures. The fault detection and a fault tolerant controller has been designed, and based on the simulated results the overall performance of the wind farm is improved on all measures. Thereby this is a step towards improving the overall performance of current and future wind farms.

  11. Hanford Borehole Geologic Information System (HBGIS)

    SciTech Connect (OSTI)

    Last, George V.; Mackley, Rob D.; Saripalli, Ratna R.

    2005-09-26

    This is a user's guide for viewing and downloading borehold geologic data through a web-based interface.

  12. Folding Mechanisms Earth Structure (2nd Edition), 2003

    E-Print Network [OSTI]

    Maryland Appalachians Swiss Alps #12;© EarthStructure (2nd ed) 311/7/2010 Bending and Buckling CompressionFolding Mechanisms Earth Structure (2nd Edition), 2003 W.W. Norton & Co, New York Slide show by Ben van der Pluijm © WW Norton; unless noted otherwise #12;© EarthStructure (2nd ed) 211/7/2010 Folds

  13. Counting Mountain-Valley Assignments for Flat Folds

    E-Print Network [OSTI]

    Hull, Thomas C.

    Counting Mountain-Valley Assignments for Flat Folds Thomas Hull Department of Mathematics Merrimack), a mountain-valley (MV) assignment is a function f : E {M,V} which indicates which crease lines are con- vex can be thought of as a structural blueprint of the fold.) Creases come in two types: mountain creases

  14. Coarsely resolved topography along protein folding pathways Ariel Fernandez

    E-Print Network [OSTI]

    Berry, R. Stephen

    Coarsely resolved topography along protein folding pathways Ariel Ferna´ndez Instituto de Matema . The topography is represented as a sequence of minima and effective saddle points. The dominant folding pathway. Initially misfolded states form and dismantle revealing no definite pattern in the topography and exhibiting

  15. Statistical Analysis of Protein Folding Kinetics Aaron R. Dinner

    E-Print Network [OSTI]

    Dinner, Aaron

    Statistical Analysis of Protein Folding Kinetics Aaron R. Dinner , Sung-Sau So ¡ , and Martin and theoretical studies over several years have led to the emergence of a unified general mechanism for protein folding that serves as a framework for the design and interpretation of research in this area [1

  16. Multi-Agent Simulation of Protein Folding Luca Bortolussi1

    E-Print Network [OSTI]

    Bortolussi, Luca

    Multi-Agent Simulation of Protein Folding Luca Bortolussi1 , Agostino Dovier1 , and Federico residues) is known. The process for reaching this state is known as the protein fold- ing. This problem the feasibility and the power of the method. Keywords: Computational Biology, Agent-Based Technologies, Protein

  17. Near-fault earthquake ground motion prediction by a high-performance spectral element numerical code

    SciTech Connect (OSTI)

    Paolucci, Roberto [Department of Structural Engineering, Politecnico di Milano P.za Leonardo da Vinci 32, 20133, Milano (Italy); Stupazzini, Marco [Department of Structural Engineering, Politecnico di Milano P.za Leonardo da Vinci 32, 20133, Milano (Italy); EUCENTRE, v. Ferrata 1, Pavia (Italy)

    2008-07-08

    Near-fault effects have been widely recognised to produce specific features of earthquake ground motion, that cannot be reliably predicted by 1D seismic wave propagation modelling, used as a standard in engineering applications. These features may have a relevant impact on the structural response, especially in the nonlinear range, that is hard to predict and to be put in a design format, due to the scarcity of significant earthquake records and of reliable numerical simulations. In this contribution a pilot study is presented for the evaluation of seismic ground-motions in the near-fault region, based on a high-performance numerical code for 3D seismic wave propagation analyses, including the seismic fault, the wave propagation path and the near-surface geological or topographical irregularity. For this purpose, the software package GeoELSE is adopted, based on the spectral element method. The set-up of the numerical benchmark of 3D ground motion simulation in the valley of Grenoble (French Alps) is chosen to study the effect of the complex interaction between basin geometry and radiation mechanism on the variability of earthquake ground motion.

  18. A Gauge Field Theory of Chirally Folded Homopolymers with Applications to Folded Proteins

    E-Print Network [OSTI]

    Ulf H. Danielsson; Martin Lundgren; Antti J. Niemi

    2010-08-26

    We combine the principle of gauge invariance with extrinsic string geometry to develop a lattice model that can be employed to theoretically describe properties of chiral, unbranched homopolymers. We find that in its low temperature phase the model is in the same universality class with proteins that are deposited in the Protein Data Bank, in the sense of the compactness index. We apply the model to analyze various statistical aspects of folded proteins. Curiously we find that it can produce results that are a very good good match to the data in the Protein Data Bank.

  19. Fault Locating, Prediction and Protection (FLPPS)

    SciTech Connect (OSTI)

    Yinger, Robert, J.; Venkata, S., S.; Centeno, Virgilio

    2010-09-30

    One of the main objectives of this DOE-sponsored project was to reduce customer outage time. Fault location, prediction, and protection are the most important aspects of fault management for the reduction of outage time. In the past most of the research and development on power system faults in these areas has focused on transmission systems, and it is not until recently with deregulation and competition that research on power system faults has begun to focus on the unique aspects of distribution systems. This project was planned with three Phases, approximately one year per phase. The first phase of the project involved an assessment of the state-of-the-art in fault location, prediction, and detection as well as the design, lab testing, and field installation of the advanced protection system on the SCE Circuit of the Future located north of San Bernardino, CA. The new feeder automation scheme, with vacuum fault interrupters, will limit the number of customers affected by the fault. Depending on the fault location, the substation breaker might not even trip. Through the use of fast communications (fiber) the fault locations can be determined and the proper fault interrupting switches opened automatically. With knowledge of circuit loadings at the time of the fault, ties to other circuits can be closed automatically to restore all customers except the faulted section. This new automation scheme limits outage time and increases reliability for customers. The second phase of the project involved the selection, modeling, testing and installation of a fault current limiter on the Circuit of the Future. While this project did not pay for the installation and testing of the fault current limiter, it did perform the evaluation of the fault current limiter and its impacts on the protection system of the Circuit of the Future. After investigation of several fault current limiters, the Zenergy superconducting, saturable core fault current limiter was selected for installation. Because of some testing problems with the Zenergy fault current limiter, installation was delayed until early 2009 with it being put into operation on March 6, 2009. A malfunction of the FCL controller caused the DC power supply to the superconducting magnet to be turned off. This inserted the FCL impedance into the circuit while it was in normal operation causing a voltage resonance condition. While these voltages never reached a point where damage would occur on customer equipment, steps were taken to insure this would not happen again. The FCL was reenergized with load on December 18, 2009. A fault was experienced on the circuit with the FCL in operation on January 14, 2010. The FCL operated properly and reduced the fault current by about 8%, what was expected from tests and modeling. As of the end of the project, the FCL was still in operation on the circuit. The third phase of the project involved the exploration of several advanced protection ideas that might be at a state where they could be applied to the Circuit of the Future and elsewhere in the SCE electrical system. Based on the work done as part of the literature review and survey, as well as a number of internal meetings with engineering staff at SCE, a number of ideas were compiled. These ideas were then evaluated for applicability and ability to be applied on the Circuit of the Future in the time remaining for the project. Some of these basic ideas were implemented on the circuit including measurement of power quality before and after the FCL. It was also decided that we would take what was learned as part of the Circuit of the Future work and extend it to the next generation circuit protection for SCE. Also at this time, SCE put in a proposal to the DOE for the Irvine Smart Grid Demonstration using ARRA funding. SCE was successful in obtaining funding for this proposal, so it was felt that exploration of new protection schemes for this Irvine Smart Grid Demonstration would be a good use of the project resources. With this in mind, a protection system that uses fault interrupting switches, hi

  20. Geological carbon sequestration: critical legal issues

    E-Print Network [OSTI]

    Watson, Andrew

    Geological carbon sequestration: critical legal issues Ray Purdy and Richard Macrory January 2004 Tyndall Centre for Climate Change Research Working Paper 45 #12;1 Geological carbon sequestration an integrated assessment of geological carbon sequestration (Project ID code T2.21). #12;2 1 Introduction

  1. PRECAMBRIAN GEOLOGY OF THE OJO CALIENTE QUADRANGLE,

    E-Print Network [OSTI]

    Treiman, Allan H.

    PRECAMBRIAN GEOLOGY OF THE OJO CALIENTE QUADRANGLE, RIO ARRIBA AND TAOS COUNTIES, NEW MEXICO A THESIS SUBMITTED TO THE DEPARTMENT OF GEOLOGY AND THE COMMITTEE ON GRADUATE STUDIES OF STANFORD Treiman June 1977 PRECAMBRIAN GEOLOGY OF THE OJO CALIENTE QUADRANGLE, RIO ARRIBA AND TAOS COUNTIES, NEW

  2. Inner model theoretic geology Gunter Fuchs

    E-Print Network [OSTI]

    Schindler, Ralf

    Inner model theoretic geology Gunter Fuchs Ralf Schindler November 18, 2014 Abstract One of the basic concepts of set theoretic geology is the mantle of a model of set theory V: it is the intersection in what was dubbed Set Theoretic Geology in that paper. One of the main results of [FHR] was that any

  3. Geological Society of America 3300 Penrose Place

    E-Print Network [OSTI]

    Chapman, Clark R.

    Geological Society of America 3300 Penrose Place P.O. Box 9140 Boulder, CO 80301 (303) 447 and restrictions: Copyright © 2002, The Geological Society of America, Inc. (GSA). All rights reserved. Copyright. Opinions presented in this publication do not reflect official positions of the Society. #12;Geological

  4. INTERAGENCY REPORT APOLLO 17 LANDING SITE GEOLOGY

    E-Print Network [OSTI]

    Rathbun, Julie A.

    INTERAGENCY REPORT APOLLO 17 LANDING SITE GEOLOGY UNITED STATES DEPARTMENT OF THE INTERIOR GEOLOGICAL SURVEY ASTROGEOLOGY #73 JUNE 1975 Prepared under NASA Contract T-5874A and W13,130 NATIONAL STATES DEPARTMENT OF THE INTERIOR GEOLOGICAL SURVEY INTERAGENCY REPORT: ASTROGEOLOGY 73 Part I

  5. Bob Campbell Geology Museum Mission Statement

    E-Print Network [OSTI]

    Stuart, Steven J.

    Bob Campbell Geology Museum Mission Statement: To foster a greater awareness, understanding, and appreciation of the complex and dynamic nature of geology. The Museum's collection focuses on rocks, minerals and fossils of Southeastern US, but includes specimens from around the world. Bob Campbell Geology Museum

  6. GEOLOGY, B.S.G. ENVIRONMENTAL OPTION

    E-Print Network [OSTI]

    Hamburger, Peter

    GEOLOGY, B.S.G. ENVIRONMENTAL OPTION (Fall 2015-Summer 2016) IPFW Residency Requirements: ____ 32/Gen Ed GEOLOGY BSG CORE COURSES (66 credits) *Note: grades of C- or better required in GEOL courses/2.0 GPA ______ 3 - 5 Credits in Geology or Geography with Laboratory (Select 1 of the following): ___3

  7. Geological Carbon Storage: The Roles of Government

    E-Print Network [OSTI]

    Geological Carbon Storage: The Roles of Government and Industry in Risk Management ROSE MURPHY version of this publication, please send an email to Mark Jaccard (jaccard@sfu.ca). #12;8 Geological to a location suitable for long-term storage. CO2 can be stored in onshore or offshore geological formations

  8. FLORIDA STATE UNIVERSITY GEOLOGY FIELD CAMP

    E-Print Network [OSTI]

    FLORIDA STATE UNIVERSITY GEOLOGY FIELD CAMP IN NORTHERN NEW MEXICO May 9, through June 15, 2015 The Department of Earth, Ocean & Atmospheric Science, Geological Science at FSU offers a 6 semester-hour course in Field Geology (GLY4790). We have been teaching this highly successful course from a facility north

  9. GeoloGy (Geol) Robinson Foundation

    E-Print Network [OSTI]

    Dresden, Gregory

    182 GeoloGy (Geol) Robinson Foundation PROFESSOR HARBoR ASSOCIATE PROFESSORS KNAPP, CONNORS ASSISTANT PROFESSORS GREER, RAHL MAJORS BACHELOR OF SCIENCE Amajor in geology leading to a Bachelor of Science degree consists of 50 credits as follows: 1. Geology160,185,211,311,330,350,andacom- prehensive

  10. A publication of the Department of Geology

    E-Print Network [OSTI]

    Seamons, Kent E.

    #12;A publication of the Department of Geology Brigharn Young University Provo, Utah 84602 Editors W. Kenneth Hamblin Cynthia M. Gardner Brigham Young University Geology Studies is published semiannually by the department. Geology Studies consists of graduate-student and staff research

  11. , UNIVERSITY Brigham Young University Geology Studies

    E-Print Network [OSTI]

    Seamons, Kent E.

    , UNIVERSITY #12;Brigham Young University Geology Studies Volume 1 5 - 1968 Part 2 Studies for Students No. 1 Guide to the Geology of the Wasatch Mountain Front, Between Provo Canyon and Y Mountain, Northeast of Provo, Utah by J. Keith Rigby and Lehi F. Hintze #12;A publication of the Department of Geology

  12. Courses: Geology (GEOL) Page 321Sonoma State University 2012-2013 Catalog Geology (GEOL)

    E-Print Network [OSTI]

    Ravikumar, B.

    Courses: Geology (GEOL) Page 321Sonoma State University 2012-2013 Catalog Geology (GEOL) GEOL 102 Our Dynamic Earth: intrODuctiOn tO GEOLOGy (3) Lecture, 2 hours; laboratory, 3 hours. A study. Emphasis on local geology, including earthquakes and other environmental aspects. Laboratory study

  13. Roadmap: Geology Environmental Geology -Bachelor of Science [AS-BS-GEOL-EGEO

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Geology ­ Environmental Geology - Bachelor of Science [AS-BS-GEOL-EGEO] College of Arts This roadmap is a recommended semester-by-semester plan of study for this major. However, courses on page 2 General Elective 8 #12;Roadmap: Geology ­ Environmental Geology - Bachelor of Science [AS

  14. ABOUT THE JOURNAL One of the oldest journals in geology, The Journal of Geology has

    E-Print Network [OSTI]

    Mateo, Jill M.

    ABOUT THE JOURNAL One of the oldest journals in geology, The Journal of Geology has promoted the systematic philosophical and fundamental study of geology since 1893. The Journal publishes original research are available for rental. For more information contact: J-advertising@press.uchicago.edu Journal of Geology

  15. Formal Concept Analysis in Geology 1 7 Formal Concept Analysis in Geology

    E-Print Network [OSTI]

    Belohlavek, Radim

    Formal Concept Analysis in Geology 1 7 Formal Concept Analysis in Geology: Attribute Tables-attribute knowledge is vague (fuzzy), which is typical of sciences like geology, biology etc. Basically, formal of fuzzy data and its possible applications in geological and related sciences. The presen- #12;Formal

  16. Courses: Geology (GEOL) Page 319Sonoma State University 2015-2016 Catalog Geology (GEOL)

    E-Print Network [OSTI]

    Ravikumar, B.

    Courses: Geology (GEOL) Page 319Sonoma State University 2015-2016 Catalog Geology (GEOL) geoL 102 our dynAMiC eArtH: introduCtion to geoLogy (3) Lecture, 2 hours; laboratory, 3 hours. A study. Emphasis on local geology, including earthquakes and other environmental as- pects. Laboratory study

  17. Mathematical Geology, Vol. 34, No. 1, January 2002 ( C 2002) On Modelling Discrete Geological Structures

    E-Print Network [OSTI]

    Baran, Sándor

    Mathematical Geology, Vol. 34, No. 1, January 2002 ( C 2002) On Modelling Discrete Geological there is a large amount of missing observations, which often is the case in geological applications. We make,predictions,MarkovchainMonteCarlo,simulatedannealing,incomplete observations. INTRODUCTION In many geological applications, there is an interest in predicting properties

  18. ABOUT THE JOURNAL One of the oldest journals in geology, The Journal of Geology has

    E-Print Network [OSTI]

    Mateo, Jill M.

    ABOUT THE JOURNAL One of the oldest journals in geology, The Journal of Geology has promoted the systematic philosophical and fundamental study of geology since 1893. The Journal publishes original research across a broad range of subfields in geology, including geophysics, geochemistry, sedimentology

  19. Courses: Geology (GEOL) Page 325Sonoma State University 2014-2015 Catalog Geology (GEOL)

    E-Print Network [OSTI]

    Ravikumar, B.

    Courses: Geology (GEOL) Page 325Sonoma State University 2014-2015 Catalog Geology (GEOL) geoL 102 our dynAMiC eArtH: introduCtion to geoLogy (3) Lecture, 2 hours; laboratory, 3 hours. A study. Empha- sis on local geology, including earthquakes and other environmental aspects. Labo- ratory study

  20. Method for fabricating fan-fold shielded electrical leads

    DOE Patents [OSTI]

    Rohatgi, R.R.; Cowan, T.E.

    1994-12-27

    Fan-folded electrical leads made from copper cladded Kapton, for example, with the copper cladding on one side serving as a ground plane and the copper cladding on the other side being etched to form the leads. The Kapton is fan folded with the leads located at the bottom of the fan-folds. Electrical connections are made by partially opening the folds of the fan and soldering, for example, the connections directly to the ground plane and/or the lead. The fan folded arrangement produces a number of advantages, such as electrically shielding the leads from the environment, is totally non-magnetic, and has a very low thermal conductivity, while being easy to fabricate. 3 figures.

  1. Method for fabricating fan-fold shielded electrical leads

    DOE Patents [OSTI]

    Rohatgi, Rajeev R. (Mountain View, CA); Cowan, Thomas E. (Livermore, CA)

    1994-01-01

    Fan-folded electrical leads made from copper cladded Kapton, for example, with the copper cladding on one side serving as a ground plane and the copper cladding on the other side being etched to form the leads. The Kapton is fan folded with the leads located at the bottom of the fan-folds. Electrical connections are made by partially opening the folds of the fan and soldering, for example, the connections directly to the ground plane and/or the lead. The fan folded arrangement produces a number of advantages, such as electrically shielding the leads from the environment, is totally non-magnetic, and has a very low thermal conductivity, while being easy to fabricate.

  2. Sub-crop geologic map of pre-Tertiary rocks in the Yucca Flat and northern Frenchman Flat areas, Nevada Test Site, southern Nevada

    SciTech Connect (OSTI)

    Cole, J.C.; Harris, A.G.; Wahl, R.R.

    1997-10-02

    This map displays interpreted structural and stratigraphic relations among the Paleozoic and older rocks of the Nevada Test Site region beneath the Miocene volcanic rocks and younger alluvium in the Yucca Flat and northern Frenchman Flat basins. These interpretations are based on a comprehensive examination and review of data for more than 77 drillholes that penetrated part of the pre-Tertiary basement beneath these post-middle Miocene structural basins. Biostratigraphic data from conodont fossils were newly obtained for 31 of these holes, and a thorough review of all prior microfossil paleontologic data is incorporated in the analysis. Subsurface relationships are interpreted in light of a revised regional geologic framework synthesized from detailed geologic mapping in the ranges surrounding Yucca Flat, from comprehensive stratigraphic studies in the region, and from additional detailed field studies on and around the Nevada Test Site. All available data indicate the subsurface geology of Yucca Flat is considerably more complicated than previous interpretations have suggested. The western part of the basin, in particular, is underlain by relics of the eastward-vergent Belted Range thrust system that are folded back toward the west and thrust by local, west-vergent contractional structures of the CP thrust system. Field evidence from the ranges surrounding the north end of Yucca Flat indicate that two significant strike-slip faults track southward beneath the post-middle Miocene basin fill, but their subsurface traces cannot be closely defined from the available evidence. In contrast, the eastern part of the Yucca Flat basin is interpreted to be underlain by a fairly simple north-trending, broad syncline in the pre-Tertiary units. Far fewer data are available for the northern Frenchman Flat basin, but regional analysis indicates the pre-Tertiary structure there should also be relatively simple and not affected by thrusting. This new interpretation has implications for ground water flow through pre-Tertiary rocks beneath the Yucca Flat and northern Frenchman Flat areas, and has consequences for ground water modeling and model validation. Our data indicate that the Mississippian Chainman Shale is not laterally extensive confining unit in the western part of the basin because it is folded back onto itself by the convergent structures of the Belted Range and CP thrust systems. Early and Middle Paleozoic limestone and dolomite are present beneath most of both basins and, regardless of structural complications, are interpreted to form a laterally continuous and extensive carbonate aquifer. Structural culmination that marks the French Peak accommodation zone along the topographic divide between the two basins provides a lateral pathway through highly fractured rock between the volcanic aquifers of Yucca Flat and the regional carbonate aquifer. This pathway may accelerate the migration of ground-water contaminants introduced by underground nuclear testing toward discharge areas beyond the Nevada Test Site boundaries. Predictive three-dimensional models of hydrostratigraphic units and ground-water flow in the pre-Tertiary rocks of subsurface Yucca Flat are likely to be unrealistic due to the extreme structural complexities. The interpretation of hydrologic and geochemical data obtained from monitoring wells will be difficult to extrapolate through the flow system until more is known about the continuity of hydrostratigraphic units. 1 plate

  3. Physical Geology Laboratory Manual Charles Merguerian and J Bret Bennington

    E-Print Network [OSTI]

    Merguerian, Charles

    Physical Geology Laboratory Manual Charles Merguerian and J Bret Bennington Geology Department Hofstra University © 2006 #12;i PHYSICAL GEOLOGY LABORATORY MANUAL Ninth Edition Professors Charles Merguerian and J Bret Bennington Geology Department Hofstra University #12;ii ACKNOWLEDGEMENTS We thank

  4. Polymer uncrossing and knotting in protein folding, and their role in minimal folding pathways

    E-Print Network [OSTI]

    Mohazab, Ali R

    2012-01-01

    We introduce a method for calculating the extent to which chain non-crossing is important in the most efficient, optimal trajectories or pathways for a protein to fold. This involves recording all unphysical crossing events of a ghost chain, and calculating the minimal uncrossing cost that would have been required to avoid such events. A depth-first tree search algorithm is applied to find minimal transformations to fold $\\alpha$, $\\beta$, $\\alpha/\\beta$, and knotted proteins. In all cases, the extra uncrossing/non-crossing distance is a small fraction of the total distance travelled by a ghost chain. Different structural classes may be distinguished by the amount of extra uncrossing distance, and the effectiveness of such discrimination is compared with other order parameters. It was seen that non-crossing distance over chain length provided the best discrimination between structural and kinetic classes. The scaling of non-crossing distance with chain length implies an inevitable crossover to entanglement-do...

  5. MSc STUDY PROGRAMME IN THE FACULTY OF GEOLOGY AND GEOENVIRONMENT, UNIVERSITY OF ATHENS 201314 Geology and Geoenvironment

    E-Print Network [OSTI]

    Kouroupetroglou, Georgios

    MSc STUDY PROGRAMME IN THE FACULTY OF GEOLOGY AND GEOENVIRONMENT, UNIVERSITY OF ATHENS 201314 1 Geology and Geoenvironment MSc Programme STUDENT HANDBOOK Applied Environmental Geology, Stratigraphy Paleontology, Geography and Environment, Dynamic Geology and Tectonics/ Hydrogeology, Geophysics

  6. Faulted joints: kinematics, displacementlength scaling relations and criteria for their identication

    E-Print Network [OSTI]

    Engelder, Terry

    and kinematics based on two sets of joints, pinnate joints and fault striations, reveal that some mesoscale faults (i.e., faults without linked fault segments) at the mesoscale: ªneoformed faultsº which form

  7. A Hybrid Model Based and Statistical Fault Diagnosis System for Industrial Process 

    E-Print Network [OSTI]

    Lin, Chen-Han

    2014-11-21

    This thesis presents a hybrid model based and statistical fault diagnosis system, which applied on the nonlinear three-tank model. The purpose of fault diagnosis is generating and analyzing the residual to find out the fault occurrence. This fault...

  8. VCSEL fault location apparatus and method

    DOE Patents [OSTI]

    Keeler, Gordon A. (Albuquerque, NM); Serkland, Darwin K. (Albuquerque, NM)

    2007-05-15

    An apparatus for locating a fault within an optical fiber is disclosed. The apparatus, which can be formed as a part of a fiber-optic transmitter or as a stand-alone instrument, utilizes a vertical-cavity surface-emitting laser (VCSEL) to generate a test pulse of light which is coupled into an optical fiber under test. The VCSEL is subsequently reconfigured by changing a bias voltage thereto and is used as a resonant-cavity photodetector (RCPD) to detect a portion of the test light pulse which is reflected or scattered from any fault within the optical fiber. A time interval .DELTA.t between an instant in time when the test light pulse is generated and the time the reflected or scattered portion is detected can then be used to determine the location of the fault within the optical fiber.

  9. Structural mapping of the ClpB ATPases of Plasmodium falciparum: Targeting protein folding and secretion for antimalarial drug design

    E-Print Network [OSTI]

    AhYoung, AP; Koehl, A; Cascio, D; Egea, PF

    2015-01-01

    falciparum: Targeting protein folding and secretion forfalciparum: targeting protein folding and secretion for

  10. Physics of Caustics and Protein Folding: Mathematical Parallels

    E-Print Network [OSTI]

    Walter Simmons; Joel L. Weiner

    2011-08-13

    The energy for protein folding arises from multiple sources and is not large in total. In spite of the many specific successes of energy landscape and other approaches, there still seems to be some missing guiding factor that explains how energy from diverse small sources can drive a complex molecule to a unique state. We explore the possibility that the missing factor is in the geometry. A comparison of folding with other physical phenomena, together with analytic modeling of a molecule, led us to analyze the physics of optical caustic formation and of folding behavior side-by-side. The physics of folding and caustics is ostensibly very different but there are several strong parallels. This comparison emphasizes the mathematical similarity and also identifies differences. Since the 1970's, the physics of optical caustics has been developed to a very high degree of mathematical sophistication using catastrophe theory. That kind of quantitative application of catastrophe theory has not previously been applied to folding nor have the points of similarity with optics been identified or exploited. A putative underlying physical link between caustics and folding is a torsion wave of non-constant wave speed, propagating on the dihedral angles and $\\Psi$ found in an analytical model of the molecule. Regardless of whether we have correctly identified an underlying link, the analogy between caustic formation and folding is strong and the parallels (and differences) in the physics are useful.

  11. Ground-Motion Simulations of Scenario Earthquakes on the Hayward Fault

    SciTech Connect (OSTI)

    Aagaard, B; Graves, R; Larsen, S; Ma, S; Rodgers, A; Ponce, D; Schwartz, D; Simpson, R; Graymer, R

    2009-03-09

    We compute ground motions in the San Francisco Bay area for 35 Mw 6.7-7.2 scenario earthquake ruptures involving the Hayward fault. The modeled scenarios vary in rupture length, hypocenter, slip distribution, rupture speed, and rise time. This collaborative effort involves five modeling groups, using different wave propagation codes and domains of various sizes and resolutions, computing long-period (T > 1-2 s) or broadband (T > 0.1 s) synthetic ground motions for overlapping subsets of the suite of scenarios. The simulations incorporate 3-D geologic structure and illustrate the dramatic increase in intensity of shaking for Mw 7.05 ruptures of the entire Hayward fault compared with Mw 6.76 ruptures of the southern two-thirds of the fault. The area subjected to shaking stronger than MMI VII increases from about 10% of the San Francisco Bay urban area in the Mw 6.76 events to more than 40% of the urban area for the Mw 7.05 events. Similarly, combined rupture of the Hayward and Rodgers Creek faults in a Mw 7.2 event extends shaking stronger than MMI VII to nearly 50% of the urban area. For a given rupture length, the synthetic ground motions exhibit the greatest sensitivity to the slip distribution and location inside or near the edge of sedimentary basins. The hypocenter also exerts a strong influence on the amplitude of the shaking due to rupture directivity. The synthetic waveforms exhibit a weaker sensitivity to the rupture speed and are relatively insensitive to the rise time. The ground motions from the simulations are generally consistent with Next Generation Attenuation ground-motion prediction models but contain long-period effects, such as rupture directivity and amplification in shallow sedimentary basins that are not fully captured by the ground-motion prediction models.

  12. New Zealand Journal of Geology and Geophysics, 1995, Vol. 38: 601-604 0028-8306/95/3804-0601 $2.50/0 The Royal Society of New Zealand 1995

    E-Print Network [OSTI]

    Okaya, David

    New Zealand Journal of Geology and Geophysics, 1995, Vol. 38: 601-604 0028-8306/95/3804-0601 $2.50/0 © The Royal Society of New Zealand 1995 601 Note Crustal reflections from the Alpine Fault Zone, South Island INTRODUCTION During March 1995, a seismic reflection experiment was carried out along the eastern shore of Lake

  13. Fault-tolerant three-level inverter

    DOE Patents [OSTI]

    Edwards, John; Xu, Longya; Bhargava, Brij B.

    2006-12-05

    A method for driving a neutral point clamped three-level inverter is provided. In one exemplary embodiment, DC current is received at a neutral point-clamped three-level inverter. The inverter has a plurality of nodes including first, second and third output nodes. The inverter also has a plurality of switches. Faults are checked for in the inverter and predetermined switches are automatically activated responsive to a detected fault such that three-phase electrical power is provided at the output nodes.

  14. Development of a bridge fault extractor tool 

    E-Print Network [OSTI]

    Bhat, Nandan D.

    2005-02-17

    are tools that analyze chip layouts and produce a realistic list of bridging faults within that chip. FedEx, previously developed at Texas A&M University, extracts all two-node intralayer bridges of any given chip layout and optionally extracts all two...) for this tool which aids in more effectively visualizing the bridge faults across the chip. The final aim of this thesis was to perform FedEx output analysis to understand the nature of the defects, such as variation of critical area (the area where...

  15. Motivation Methodology Conclusions A Fault Tolerance Bisimulation Proof for

    E-Print Network [OSTI]

    Francalanza, Adrian

    Motivation Methodology Conclusions A Fault Tolerance Bisimulation Proof for Consensus Adrian of Somewhere and Elsewhere A Fault Tolerance Bisimulation Proof for Consensus #12;Motivation Methodology Conclusions Outline 1 Motivation 2 Methodology 3 Conclusions Adrian Francalanza, Matthew Hennessy Universities

  16. Upper crustal faulting in an obliquely extending orogen, structural...

    Open Energy Info (EERE)

    field in the central Coso Range, eastern California, image brittle faults and other structures in a zone of localized crustal extension between two major strike-slip faults. The...

  17. Occupancy Based Fault Detection on Building Level - a Feasibility Study 

    E-Print Network [OSTI]

    Tuip, B.; Houten, M.; Trcka, M.; Hensen, M.

    2010-01-01

    -line, self learning fault detection tool on building level. Taking passive user behavior into account, the tool aims to distinguish real faults from unexpected user behavior. An artificial neural network model is used to predict building energy consumption...

  18. Two Similarity Measure Approaches to Whole Building Fault Diagnosis 

    E-Print Network [OSTI]

    Lin, G.; Claridge, D.

    2012-01-01

    similarity are defined and the methodology for implementing the proposed whole building fault diagnosis approaches is presented. Cosine similarity and Euclidean distance similarity are applied to two field observed fault test cases, and both the cosine...

  19. Dining philosophers with masking tolerance to crash faults 

    E-Print Network [OSTI]

    Idimadakala, Vijaya K.

    2009-05-15

    We examine the tolerance of dining philosopher algorithms subject to process crash faults in arbitrary conflict graphs. This classic problem is unsolvable in asynchronous message-passing systems subject to even a single crash fault. By contrast...

  20. Synthesis and evaluation of fault-tolerant quantum computer architectures

    E-Print Network [OSTI]

    Cross, Andrew W. (Andrew William), 1979-

    2005-01-01

    Fault-tolerance is the cornerstone of practical, large-scale quantum computing, pushed into its prominent position with heroic theoretical efforts. The fault-tolerance threshold, which is the component failure probability ...

  1. Development of a Hydrologic Characterization Technology for Fault Zones Final Report

    E-Print Network [OSTI]

    Karasaki, Kenzi

    2014-01-01

    times by triggering a GFCI (Ground Fault Circuit Interrupt).time, rain caused a GFCI (ground fault circuit interrupt),

  2. Water dynamics clue to key residues in protein folding

    SciTech Connect (OSTI)

    Gao, Meng [State Key Laboratory for Turbulence and Complex Systems, and Department of Biomedical Engineering, and Center for Theoretical Biology, and Center for Protein Science, Peking University, Beijing 100871 (China)] [State Key Laboratory for Turbulence and Complex Systems, and Department of Biomedical Engineering, and Center for Theoretical Biology, and Center for Protein Science, Peking University, Beijing 100871 (China); Zhu, Huaiqiu, E-mail: hqzhu@pku.edu.cn [State Key Laboratory for Turbulence and Complex Systems, and Department of Biomedical Engineering, and Center for Theoretical Biology, and Center for Protein Science, Peking University, Beijing 100871 (China)] [State Key Laboratory for Turbulence and Complex Systems, and Department of Biomedical Engineering, and Center for Theoretical Biology, and Center for Protein Science, Peking University, Beijing 100871 (China); Yao, Xin-Qiu [State Key Laboratory for Turbulence and Complex Systems, and Department of Biomedical Engineering, and Center for Theoretical Biology, and Center for Protein Science, Peking University, Beijing 100871 (China) [State Key Laboratory for Turbulence and Complex Systems, and Department of Biomedical Engineering, and Center for Theoretical Biology, and Center for Protein Science, Peking University, Beijing 100871 (China); Department of Biophysics, Kyoto University, Sakyo Kyoto 606-8502 (Japan); She, Zhen-Su, E-mail: she@pku.edu.cn [State Key Laboratory for Turbulence and Complex Systems, and Department of Biomedical Engineering, and Center for Theoretical Biology, and Center for Protein Science, Peking University, Beijing 100871 (China)] [State Key Laboratory for Turbulence and Complex Systems, and Department of Biomedical Engineering, and Center for Theoretical Biology, and Center for Protein Science, Peking University, Beijing 100871 (China)

    2010-01-29

    A computational method independent of experimental protein structure information is proposed to recognize key residues in protein folding, from the study of hydration water dynamics. Based on all-atom molecular dynamics simulation, two key residues are recognized with distinct water dynamical behavior in a folding process of the Trp-cage protein. The identified key residues are shown to play an essential role in both 3D structure and hydrophobic-induced collapse. With observations on hydration water dynamics around key residues, a dynamical pathway of folding can be interpreted.

  3. DUKE GEOLOGICAL LABORATORY Web: www.dukelabs.com

    E-Print Network [OSTI]

    Merguerian, Charles

    ................................................................... 31 Bedrock Stratigraphy of New York City ........................................................................................................... 52 Faults and Seismicity

  4. Fault-Tolerant Non-interference Extended Version

    E-Print Network [OSTI]

    Russo, Alejandro

    a fault (induced by holding a light-bulb near the processor!) triggers a single bit flip in a malicious

  5. Adjustable direct current and pulsed circuit fault current limiter

    DOE Patents [OSTI]

    Boenig, Heinrich J.; Schillig, Josef B.

    2003-09-23

    A fault current limiting system for direct current circuits and for pulsed power circuit. In the circuits, a current source biases a diode that is in series with the circuits' transmission line. If fault current in a circuit exceeds current from the current source biasing the diode open, the diode will cease conducting and route the fault current through the current source and an inductor. This limits the rate of rise and the peak value of the fault current.

  6. Detachment Faulting & Geothermal Resources- Pearl Hot Spring, NV

    Broader source: Energy.gov [DOE]

    Detachment Faulting & Geothermal Resources - Pearl Hot Spring, NV presentation at the April 2013 peer review meeting held in Denver, Colorado.

  7. Computational investigations of folded self-avoiding walks related to protein folding

    E-Print Network [OSTI]

    Bahi, Jacques M; Mazouzi, Kamel; Philippe, Laurent

    2013-01-01

    Various subsets of self-avoiding walks naturally appear when investigating existing methods designed to predict the 3D conformation of a protein of interest. Two such subsets, namely the folded and the unfoldable self-avoiding walks, are studied computationally in this article. We show that these two sets are equal and correspond to the whole $n$-step self-avoiding walks for $n\\leqslant 14$, but that they are different for numerous $n \\geqslant 108$, which are common protein lengths. Concrete counterexamples are provided and the computational methods used to discover them are completely detailed. A tool for studying these subsets of walks related to both pivot moves and proteins conformations is finally presented.

  8. Preliminary Geologic Characterization of West Coast States for Geologic Sequestration

    SciTech Connect (OSTI)

    Larry Myer

    2005-09-29

    Characterization of geological sinks for sequestration of CO{sub 2} in California, Nevada, Oregon, and Washington was carried out as part of Phase I of the West Coast Regional Carbon Sequestration Partnership (WESTCARB) project. Results show that there are geologic storage opportunities in the region within each of the following major technology areas: saline formations, oil and gas reservoirs, and coal beds. The work focused on sedimentary basins as the initial most-promising targets for geologic sequestration. Geographical Information System (GIS) layers showing sedimentary basins and oil, gas, and coal fields in those basins were developed. The GIS layers were attributed with information on the subsurface, including sediment thickness, presence and depth of porous and permeable sandstones, and, where available, reservoir properties. California offers outstanding sequestration opportunities because of its large capacity and the potential of value-added benefits from enhanced oil recovery (EOR) and enhanced gas recovery (EGR). The estimate for storage capacity of saline formations in the ten largest basins in California ranges from about 150 to about 500 Gt of CO{sub 2}, depending on assumptions about the fraction of the formations used and the fraction of the pore volume filled with separate-phase CO{sub 2}. Potential CO{sub 2}-EOR storage was estimated to be 3.4 Gt, based on a screening of reservoirs using depth, an API gravity cutoff, and cumulative oil produced. The cumulative production from gas reservoirs (screened by depth) suggests a CO{sub 2} storage capacity of 1.7 Gt. In Oregon and Washington, sedimentary basins along the coast also offer sequestration opportunities. Of particular interest is the Puget Trough Basin, which contains up to 1,130 m (3,700 ft) of unconsolidated sediments overlying up to 3,050 m (10,000 ft) of Tertiary sedimentary rocks. The Puget Trough Basin also contains deep coal formations, which are sequestration targets and may have potential for enhanced coal bed methane recovery (ECBM).

  9. B.S. GEOLOGY (Geology Subplan) CHECKLIST of required courses for major Geology Core Courses: 9-10 courses, 33-34 credits

    E-Print Network [OSTI]

    Massachusetts at Amherst, University of

    B.S. GEOLOGY (Geology Subplan) CHECKLIST of required courses for major Geology Core Courses: 9 - Experiencing Geology Lab and either GEOSCI 103 - Intro to Oceanography or GEOSCI 105 - Dynamic Earth 4 (1) (4 semester GEOSCI 201 ­ History of the Earth 4 1st or 2nd year, spring semester GEOSCI 231 ­ Geological Field

  10. ELECTROMAGNETIC IMAGES OF THE TINTINA FAULT (NORTHERN CANADIAN CORDILLERA)

    E-Print Network [OSTI]

    Jones, Alan G.

    ELECTROMAGNETIC IMAGES OF THE TINTINA FAULT (NORTHERN CANADIAN CORDILLERA) Juanjo Ledo1 , Alan G to obtain a crustal scale electromagnetic image of the fault. A short, higher station density profile-dimensional (2- D) electromagnetic behavior of the fault. Distortion decomposition of the responses corroborated

  11. NASA Technical Memorandum 89098 The Fault-Tree Compiler

    E-Print Network [OSTI]

    Butler, Ricky W.

    L - NASA Technical Memorandum 89098 The Fault-Tree Compiler Anna L. Martensen Ricky W. Butler in preliminary design analysis. The goal of the Fault Tree Compiler (m)program is to provide the user with a tool also be performed, providing the user The motivation for the development of the Fault Tree Compiler

  12. Development of the Global Earthquake Model's neotectonic fault database

    E-Print Network [OSTI]

    New Hampshire, University of

    Development of the Global Earthquake Model's neotectonic fault database Annemarie Christophersen1 database and a unique graphical interface for the compilation of new fault data. A key design principle is that of an electronic field notebook for capturing observations a geologist would make about a fault. The database

  13. Synthesizing Round Based FaultTolerant Programs using Genetic Programming

    E-Print Network [OSTI]

    Fernandez, Thomas

    Synthesizing Round Based Fault­Tolerant Programs using Genetic Programming Ling Zhu and Sandeep based distributed fault­tolerant programs using stack based genetic pro­ gramming. Our approach evolves a fault­tolerant program based on a round based structure and the program specification. To permit

  14. Statistical estimation of multiple faults in aircraft gas turbine engines

    E-Print Network [OSTI]

    Ray, Asok

    415 Statistical estimation of multiple faults in aircraft gas turbine engines S Sarkar, C Rao of multiple faults in aircraft gas-turbine engines, based on a statistical pattern recognition tool called commercial aircraft engine. Keywords: aircraft propulsion, gas turbine engines, multiple fault estimation

  15. Online Fault Detection and Tolerance for Photovoltaic Energy Harvesting Systems

    E-Print Network [OSTI]

    Pedram, Massoud

    Online Fault Detection and Tolerance for Photovoltaic Energy Harvesting Systems Xue Lin 1 , Yanzhi, yanzhiwa, dizhu, pedram}@usc.edu, 2 naehyuck@elpl.snu.ac.kr ABSTRACT Photovoltaic energy harvesting systems, Performance, Reliability. Keywords Photovoltaic System, Fault Detection, Fault Tolerance, Photovoltaic Panel

  16. Symbolic Dynamic Analysis of Transient Time Series for Fault

    E-Print Network [OSTI]

    Ray, Asok

    Symbolic Dynamic Analysis of Transient Time Series for Fault Detection in Gas Turbine Engines paper presents a symbolic dynamics-based method for detection of incipient faults in gas turbine engines dynamics, fault detection, aircraft gas turbine engines 1 Introduction Performance monitoring of aircraft

  17. PCB origami : folding circuit boards into electronic products

    E-Print Network [OSTI]

    Sterman, Yoav

    2013-01-01

    PCB origami is a concept for an alternative manufacturing process of electronic products, in which the electronic material will be manufactured flat and folded into functional 3D graspable products by the user. PCBs will ...

  18. UFO (UnFold Operator) computer program abstract

    SciTech Connect (OSTI)

    Kissel, L.; Biggs, F.

    1982-11-01

    UFO (UnFold Operator) is an interactive user-oriented computer program designed to solve a wide range of problems commonly encountered in physical measurements. This document provides a summary of the capabilities of version 3A of UFO.

  19. Physics of Caustics and Protein Folding: Mathematical Parallels

    E-Print Network [OSTI]

    Simmons, Walter

    2011-01-01

    The energy for protein folding arises from multiple sources and is not large in total. In spite of the many specific successes of energy landscape and other approaches, there still seems to be some missing guiding factor that explains how energy from diverse small sources can drive a complex molecule to a unique state. We explore the possibility that the missing factor is in the geometry. A comparison of folding with other physical phenomena, together with analytic modeling of a molecule, led us to analyze the physics of optical caustic formation and of folding behavior side-by-side. The physics of folding and caustics is ostensibly very different but there are several strong parallels. This comparison emphasizes the mathematical similarity and also identifies differences. Since the 1970's, the physics of optical caustics has been developed to a very high degree of mathematical sophistication using catastrophe theory. That kind of quantitative application of catastrophe theory has not previously been applied ...

  20. Determining the role of hydration forces in protein folding

    SciTech Connect (OSTI)

    Sorenson, J.M. [Univ. of California, Berkeley, CA (United States). Dept. of Chemistry] [Univ. of California, Berkeley, CA (United States). Dept. of Chemistry; Hura, G. [Univ. of California, Berkeley, CA (United States)] [Univ. of California, Berkeley, CA (United States); [Lawrence Berkeley National Lab., CA (United States). Life Sciences Div.; Soper, A.K. [Rutherford Appleton Lab., Didcot (United Kingdom). ISIS Facility] [Rutherford Appleton Lab., Didcot (United Kingdom). ISIS Facility; Pertsemlidis, A. [Univ. of Texas Southwestern Medical Center, Dallas, TX (United States). Dept. of Biochemistry] [Univ. of Texas Southwestern Medical Center, Dallas, TX (United States). Dept. of Biochemistry; Head-Gordon, T. [Lawrence Berkeley National Lab., CA (United States)] [Lawrence Berkeley National Lab., CA (United States)

    1999-07-01

    One of the primary issues in protein folding is determining what forces drive folding and eventually stabilize the native state. A delicate balance exists between electrostatic forces such as hydrogen bonding and salt bridges, and the hydrophobic effect, which are present for both intramolecular protein interactions and intermolecular contributions with the surrounding aqueous environment. This article describes a combined experimental, theoretical, and computational effort to show how the complexity of aqueous hydration can influence the structure, folding and aggregation, and stability of model protein systems. The unification of the theoretical and experimental work is the development or discovery of effective amino acid interactions that implicitly include the effects of aqueous solvent. The authors show that consideration of the full range of complexity of aqueous hydration forces such as many-body effects, long-ranged character of aqueous solvation, and the assumptions made about the degree of protein hydrophobicity can directly impact the observed structure, folding, and stability of model protein systems.

  1. Low energy pathways for reproducible in vivo protein folding

    E-Print Network [OSTI]

    Leonor Cruzeiro

    2011-01-03

    Two proteins, one belonging to the mainly alpha class and the other belonging to the alpha/beta class, are selected to test a kinetic mechanism for protein folding. Targeted molecular dynamics is applied to generate folding pathways for those two proteins, starting from two well defined initial conformations: a fully extended and a alpha-helical conformation. The results show that for both proteins the alpha-helical initial conformation provides overall lower energy pathways to the native state. For the alpha/beta protein, 30 % (40%) of the pathways from an initial alpha-helix (fully extended) structure lead to unentangled native folds, a success rate that can be increased to 85 % by the introduction of a well-defined intermediate structure. These results open up a new direction in which to look for a solution to the protein folding problem, as detailed at the end.

  2. Early Events in Protein Folding Explored by Rapid Mixing Methods

    E-Print Network [OSTI]

    Roder, Heinrich

    of unfolded or partially folded states, (V7 10/11 12:16) VCH/G J-1079 Buchner I PMU: WSL(W) 19/08/04 AC1: WSL

  3. Investigation of Peptide Folding by Nuclear Magnetic Resonance Spectroscopy 

    E-Print Network [OSTI]

    Hwang, SoYoun

    2012-07-16

    . Solution-state nuclear magnetic resonance (NMR) is a powerful technique to investigate protein structure, dynamics, and folding mechanisms, since it provides residue-specific information. One of the major contributions that govern protein structure appears...

  4. Mechanisms of protein-folding diseases at a glance

    E-Print Network [OSTI]

    Valastyan, Julie Suzanne

    For a protein to function appropriately, it must first achieve its proper conformation and location within the crowded environment inside the cell. Multiple chaperone systems are required to fold proteins correctly. In ...

  5. SOFTWARE Open Access RNAexinv: An extended inverse RNA folding from

    E-Print Network [OSTI]

    Barash, Danny

    SOFTWARE Open Access RNAexinv: An extended inverse RNA folding from shape and physical attributes problem that aims to predict the secondary structure of a given RNA sequence. Software packages are nowa

  6. Energy landscapes, folding mechanisms and kinetics of RNA tetraloop hairpins

    E-Print Network [OSTI]

    Chakraborty, Debayan; Collepardo-Guevara, Rosana; Wales, David J.

    2014-12-02

    of its biological functions, are poorly understood. In this work, we use the discrete path sampling (DPS) approach to explore the energy landscapes of two RNA tetraloop hairpins, and provide insights into their folding mechanisms and kinetics in atomistic...

  7. Speeding up protein folding: mutations that increase the rate at which Rop folds and unfolds by over four orders of magnitude

    E-Print Network [OSTI]

    Regan, Lynne

    Speeding up protein folding: mutations that increase the rate at which Rop folds and unfolds. Introduction When a protein folds, the backbone and sidechain atoms organize from the extensive number protein folding usually occurs on the order of milliseconds to seconds, it is gener- ally accepted

  8. An algorithm for faulted phase and feeder selection under high impedance fault conditions 

    E-Print Network [OSTI]

    Benner, Carl Lee

    1988-01-01

    . One method based on increases in third and fifth harmonic symmetrical current components under high impedance fault conditions has been proposed by Balser et. Journal model is IEEE Transactions on Power Delivery. al, of Power Technologies Inc [1...

  9. Master equation approach to protein folding and kinetic traps

    E-Print Network [OSTI]

    Marek Cieplak; Malte Henkel; Jan Karbowski; Jayanth R. Banavar

    1998-04-21

    The master equation for 12-monomer lattice heteropolymers is solved numerically and the time evolution of the occupancy of the native state is determined. At low temperatures, the median folding time follows the Arrhenius law and is governed by the longest relaxation time. For good folders, significant kinetic traps appear in the folding funnel whereas for bad folders, the traps also occur in non-native energy valleys.

  10. Kinetic Studies of the Folding of Heterodimeric Monellin: Evidence for Switching between Alternative

    E-Print Network [OSTI]

    Keywords: monellin; heterodimeric protein; folding kinetics; parallel pathways Determining whether or not a protein uses multiple pathways to fold is an important goal in protein folding studies. When multiple to the protein folding reaction, and the utilization of more than one pathway would speed protein folding.2

  11. Using Bit-Vector Decision Procedures for Analysis of Protein Folding Pathways

    E-Print Network [OSTI]

    Langmead, Christopher James

    Using Bit-Vector Decision Procedures for Analysis of Protein Folding Pathways Christopher James-vector decision procedures for the analysis of protein folding pathways. We argue that the protein fold- ing by the different nature of the protein folding problem, we present a translation of the protein folding pathways

  12. DOI: 10.1002/ijch.201300141 Exploring the Protein Folding Dynamics of Beta3s with

    E-Print Network [OSTI]

    Mukamel, Shaul

    DOI: 10.1002/ijch.201300141 Exploring the Protein Folding Dynamics of Beta3s with Two folding process. Howev- er, monitoring protein folding dynamics is still challeng- ing. Experiments of protein folding. However, most folding processes of interest occur on timescales (microsecond to second

  13. RoadmapMethodsforProteinFolding MarkMoll, DavidSchwarz, LydiaE.Kavraki

    E-Print Network [OSTI]

    Moll, Mark

    RoadmapMethodsforProteinFolding MarkMoll, DavidSchwarz, LydiaE.Kavraki Abstract--Protein folding, and get a coarse view of the energy landscape. Keywords: protein folding, folding kinetics, roadmap methods, conformation sampling techniques, energy landscape. 1 Introduction Protein folding refers

  14. Unifying sensor fault detection with energy conservation

    E-Print Network [OSTI]

    Dobson, Simon

    Unifying sensor fault detection with energy conservation Lei Fang and Simon Dobson School energy usage. Section 2 presents our framework, which is evaluated in section 3 by means of some reliability. Sensors are often energy-hungry and cannot operate over the long term, and the data they gather

  15. Symmetrical Fault Analysis 1.0 Definition

    E-Print Network [OSTI]

    McCalley, James D.

    , shunt admittances, and -Y phase shifts are neglected. Synchronous machines (generators and motors-286]. We begin with the simplest of examples. 3.0 Example Consider a single generator supplying an R that will be faulted). Eg: steady-state internal gen voltage Xd: synchronous (steady-state) reactance IL: load

  16. All row, planar fault detection system

    DOE Patents [OSTI]

    Archer, Charles Jens; Pinnow, Kurt Walter; Ratterman, Joseph D; Smith, Brian Edward

    2013-07-23

    An apparatus, program product and method for detecting nodal faults may simultaneously cause designated nodes of a cell to communicate with all nodes adjacent to each of the designated nodes. Furthermore, all nodes along the axes of the designated nodes are made to communicate with their adjacent nodes, and the communications are analyzed to determine if a node or connection is faulty.

  17. Safety Requirements and Fault Trees using Retrenchment

    E-Print Network [OSTI]

    Banach, Richard

    this initial model has been created, the elicitation of safety requirements yields a fresh set of criteria are applied, the information linking the design and the safety assessment phases is often carried outSafety Requirements and Fault Trees using Retrenchment R. Banach and R. Cross Computer Science

  18. Coordinated Fault Tolerance for High-Performance Computing

    SciTech Connect (OSTI)

    Dongarra, Jack; Bosilca, George; et al.

    2013-04-08

    Our work to meet our goal of end-to-end fault tolerance has focused on two areas: (1) improving fault tolerance in various software currently available and widely used throughout the HEC domain and (2) using fault information exchange and coordination to achieve holistic, systemwide fault tolerance and understanding how to design and implement interfaces for integrating fault tolerance features for multiple layers of the software stack—from the application, math libraries, and programming language runtime to other common system software such as jobs schedulers, resource managers, and monitoring tools.

  19. A Summary of Fault Recurrence and Strain Rates in the Vicinity of the Hanford Site--Topical Report

    SciTech Connect (OSTI)

    Bjornstad, Bruce N.; Winsor, Kelsey; Unwin, Stephen D.

    2012-08-01

    This document is one in a series of topical reports compiled by the Pacific Northwest National Laboratory to summarize technical information on selected topics important to the performance of a probabilistic seismic hazard analysis of the Hanford Site. The purpose of this report is to summarize available data and analyses relevant to fault recurrence and strain rates within the Yakima Fold Belt. Strain rates have met with contention in the expert community and may have a significant potential for impact on the seismic hazard estimate at the Hanford Site. This report identifies the alternative conceptual models relevant to this technical issue and the arguments and data that support those models. It provides a brief description of the technical issue and principal uncertainties; a general overview on the nature of the technical issue, along with alternative conceptual models, supporting arguments and information, and uncertainties; and finally, suggests some prospective approaches to reducing uncertainties about earthquake recurrence rates for the Yakima Fold Belt.

  20. Layer thickness and the shape of faults A. Benedicto

    E-Print Network [OSTI]

    . Paris XI, France R. A. Schultz Dept. Geological Sciences, Geomechanics-Rock Fracture Group, Mackay

  1. GEOLOGIC CARBON SEQUESTRATION STRATEGIES FOR CALIFORNIA

    E-Print Network [OSTI]

    CALIFORNIA ENERGY COMMISSION GEOLOGIC CARBON SEQUESTRATION STRATEGIES FOR CALIFORNIA to extend our thanks to the authors of various West Coast Regional Carbon Sequestration Partnership

  2. Regional geophysics, Cenozoic tectonics and geologic resources...

    Open Energy Info (EERE)

    adjoining regions Jump to: navigation, search OpenEI Reference LibraryAdd to library Conference Proceedings: Regional geophysics, Cenozoic tectonics and geologic resources of the...

  3. Carbonic Acid Shows Promise in Geology, Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Surprising Secrets of Carbonic Acid Probing the Surprising Secrets of Carbonic Acid Berkeley Lab Study Holds Implications for Geological and Biological Processes October 23,...

  4. Geology and Geophysics at The University of Kansas Geology's High-Tech Revolution

    E-Print Network [OSTI]

    GHAWKER Geology and Geophysics at The University of Kansas Fall 2009 Geology's High-Tech Revolution Associates Program of the Kansas University Endowment Association. The High-Tech Revolution A geologist

  5. Flemish fieldstone: unravelling lithological differences and diagenesis Research Unit: Sedimentary Geology and Engineering Geology

    E-Print Network [OSTI]

    Gent, Universiteit

    Flemish fieldstone: unravelling lithological differences and diagenesis Research Unit: Sedimentary Geology and Engineering Geology Topic: Fieldstone, natural stone, diagenesis, microscopy with a great interest in sedimentation processes and diagenesis, in petrology and Flemish stratigraphy

  6. On the Complexity of Protein Folding Pierluigi Crescenzi, Deborah Goldman, Christos Papadimitriou

    E-Print Network [OSTI]

    California at Irvine, University of

    On the Complexity of Protein Folding Pierluigi Crescenzi, Deborah Goldman, Christos Papadimitriou Antonio Piccolboni, Mihalis Yannakakis Abstract We show that the protein folding problem in the two protein folding are the interactions between their monomers; recently, the view that non

  7. Long-time protein folding dynamics from short-time molecular dynamics simulations

    E-Print Network [OSTI]

    Chodera, J D; Swope, W C; Pitera, J W; Dill, Ken A

    2006-01-01

    On the simulation of protein folding by short time scaleand W. A. Eaton, The protein folding “speed limit,” Curr.and T. Head-Gordon, Protein folding by distributed computing

  8. Parallel ContinuationBased Global Optimization for Molecular Conformation and Protein Folding \\Lambda

    E-Print Network [OSTI]

    Neumaier, Arnold

    Parallel Continuation­Based Global Optimization for Molecular Conformation and Protein Folding­ pecially protein folding. Global minimization problems are difficult to solve when the objective functions­ cluding energy functions for molecular conformation and protein folding. Mathematical theory

  9. Parallel ContinuationBased Global Optimization for Molecular Conformation and Protein Folding

    E-Print Network [OSTI]

    Neumaier, Arnold

    Parallel Continuation­Based Global Optimization for Molecular Conformation and Protein Folding protein folding. Global minimization problems are difficult to solve when the objective functions have energy functions for molecular conformation and protein folding. Mathematical theory for the method

  10. THE UNIVERSITY OF CHICAGO UNIFYING FRAMEWORK FOR THE PREDICTION OF PROTEIN FOLDING

    E-Print Network [OSTI]

    Sosnick, Tobin R.

    THE UNIVERSITY OF CHICAGO UNIFYING FRAMEWORK FOR THE PREDICTION OF PROTEIN FOLDING PATHWAYS the protein folding problem challenging? . . . . . . . . . . . . . 5 1.2 Some essential concepts: Ingredients of a protein folding algorithm . . . . . . . 15 1.4 Some useful formalisms regarding protein

  11. Crucial stages of protein folding through a solvable model: Predicting target sites

    E-Print Network [OSTI]

    Cecconi, Fabio

    Crucial stages of protein folding through a solvable model: Predicting target sites for enzyme. Keywords: Protein-folding modeling; prediction of key folding sites; HIV-1 protease; drug resistance One

  12. Detection and characterization of partially folded forms on the protein energy landscape

    E-Print Network [OSTI]

    Bernstein, Rachel Simma

    2011-01-01

    and the mechanism of protein folding in cytochrome C. Int Jstructure analysis of a protein folding transition state;of a three-state protein folding pathway by NMR relaxation

  13. Carbon-deuterium bonds as an infrared probe of protein dynamics, local electrostatics and folding

    E-Print Network [OSTI]

    Sagle, Laura B.

    2006-01-01

    for Mechanisms of Protein Folding. Proc. Natl. Acad. Sci. U.Ptitsyn, O. B. , Protein Folding: Hypothesis andEvidenc for Barrier-Limited Protein Folding Kinetics on the

  14. Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping

    E-Print Network [OSTI]

    Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping distances between proteins. This method shows significant improvement in protein fold recognition. Overall March 2014 Keywords: Protein sequence Fold recognition Alignment method Feature extraction

  15. Coda-wave interferometry analysis of time-lapse VSP data for monitoring geological carbon sequestration

    E-Print Network [OSTI]

    Zhou, R.

    2010-01-01

    Monitoring Geological Carbon Sequestration Authors: RongmaoGeological Carbon Sequestration ABSTRACT Injection andmonitoring geological carbon sequestration. ACKNOWLEDGEMENTS

  16. Intermediates and the folding of proteins L and G

    SciTech Connect (OSTI)

    Brown, Scott; Head-Gordon, Teresa

    2003-07-01

    We use a minimalist protein model, in combination with a sequence design strategy, to determine differences in primary structure for proteins L and G that are responsible for the two proteins folding through distinctly different folding mechanisms. We find that the folding of proteins L and G are consistent with a nucleation-condensation mechanism, each of which is described as helix-assisted {beta}-1 and {beta}-2 hairpin formation, respectively. We determine that the model for protein G exhibits an early intermediate that precedes the rate-limiting barrier of folding and which draws together misaligned secondary structure elements that are stabilized by hydrophobic core contacts involving the third {beta}-strand, and presages the later transition state in which the correct strand alignment of these same secondary structure elements is restored. Finally the validity of the targeted intermediate ensemble for protein G was analyzed by fitting the kinetic data to a two-step first order reversible reaction, proving that protein G folding involves an on-pathway early intermediate, and should be populated and therefore observable by experiment.

  17. Jeffrey A. Karson Structural Geology & Tectonics Born November 3, 1949

    E-Print Network [OSTI]

    Raina, Ramesh

    Jeffrey A. Karson Structural Geology & Tectonics Born November 3, 1949 204 Heroy Geology Laboratory-443-3363 Syracuse, NY 13244-1070 email: jakarson@syr.edu Education B.S. (Geology) Case Institute of Technology (CWRU), 1972 M.S. (Geology) State University of New York at Albany (SUNYA), 1975 Ph.D. (Geology) State

  18. Geologic mapping of tectonic planets Vicki L. Hansen *

    E-Print Network [OSTI]

    Hansen, Vicki

    Geologic mapping of tectonic planets Vicki L. Hansen * Department of Geological Sciences, Southern 2000; accepted 14 January 2000 Abstract Geological analysis of planets typically begins with the construction of a geologic map of the planets' surfaces using remote data sets. Geologic maps provide the basis

  19. Petroleum Geology Conference series doi: 10.1144/0070921

    E-Print Network [OSTI]

    Demouchy, Sylvie

    Petroleum Geology Conference series doi: 10.1144/0070921 2010; v. 7; p. 921-936Petroleum Geology Collection to subscribe to Geological Society, London, Petroleum Geologyhereclick Notes on January 5, 2011Downloaded by by the Geological Society, London © Petroleum Geology Conferences Ltd. Published #12;An

  20. On the use of finite fault solution for tsunami generation problems

    E-Print Network [OSTI]

    Dutykh, Denys; Gardeil, Xavier

    2010-01-01

    The present study is devoted to the tsunami wave generation problem. The main goal of this work is two-fold. First of all, we propose a simple and computationally inexpensive model for the description of the sea bed displacement during an underwater earthquake, based on the finite fault solution for the slip distribution under some assumptions on the rupturing process dynamics. Once the bottom motion is reconstructed, we study waves induced on the free surface of the ocean. For this purpose we consider three different models approximating the Euler equations of the water wave theory. Namely, we deal with linearized Euler equations (also known as Cauchy-Poisson problem), a Boussinesq system and a weakly nonlinear model. An intercomparison of these approaches is performed. All developments in this study are illustrated on the real world example of the July 17, 2006 Java event.