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Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
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We encourage you to perform a real-time search of NLEBeta
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1

Joint Genome Institute Progress Report 2002-2005  

SciTech Connect

Progress report covering activities at the DOE-Joint Genome Institute in Walnut Creek, California for the period 2002-2005.

Gilbert, David

2005-10-03T23:59:59.000Z

2

DOE Joint Genome Institute: JGI & NERSC Partner for GenomicHigh...  

NLE Websites -- All DOE Office Websites (Extended Search)

April 12, 2010 JGI & NERSC Partner for Genomic High-performance Computing WALNUT CREEK, CA-The Department of Energy Joint Genome Institute (JGI) and the National Energy Research...

3

Seventh Annual DOE Joint Genome Institute User Meeting Sponsored By  

NLE Websites -- All DOE Office Websites (Extended Search)

Seventh Annual Seventh Annual DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 20-22, 2012 Walnut Creek Marriott Walnut Creek, California Contents Speaker Presentations .......................................................................................................... 1 Poster Presentations ........................................................................................................... 13 Attendees ............................................................................................................................ 83 Author Index ....................................................................................................................... 89 Abstracts alphabetical by speaker

4

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms  

E-Print Network (OSTI)

in walnut with an AGSNP pipeline updated for SNP discoveryin walnut with an AGSNP pipeline updated for SNP discoverythe development of a pipeline (AGSNP) for genome-wide SNP

2012-01-01T23:59:59.000Z

5

DOE JGI Microbial Genomics & Metagenomics Workshops  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute Microbial Genomics & Metagenomics Workshops Walnut Creek, California The U.S. Department of Energy Joint Genome Institute (DOE JGI) will be offering...

6

DOE Joint Genome Institute: Brown Tide Culprit Sequenced: Genome...  

NLE Websites -- All DOE Office Websites (Extended Search)

Culprit Sequenced: Genome of the First of Algal Bloom Species WALNUT CREEK, Calif.- Algae play key roles in the global carbon cycle, helping sequester significant amounts of...

7

DOE Joint Genome Institute Completes Soybean Genome- Data Released to  

NLE Websites -- All DOE Office Websites (Extended Search)

Press Release: December 8, 2008 Press Release: December 8, 2008 DOE Joint Genome Institute Completes Soybean Genome- Data Released to Advance Biofuel, Food, & Feed Research WALNUT CREEK, CA- The U.S. Department of Energy Joint Genome Institute (DOE JGI) has released a complete draft assembly of the soybean (Glycine max) genetic code, making it widely available to the research community to advance new breeding strategies for one of the world's most valuable plant commodities. Soybean not only accounts for 70 percent of the world's edible protein, but also is an emerging feedstock for biodiesel production. Soybean is second only to corn as an agricultural commodity and is the leading U.S. agricultural export. DOE JGI's interest in sequencing the soybean centers on its use for biodiesel, a renewable, alternative fuel with the highest energy content of

8

DOE Joint Genome Institute: Soybean Genome Analysis Reveals Pathways for  

NLE Websites -- All DOE Office Websites (Extended Search)

January 13, 2010 January 13, 2010 Soybean Genome Analysis Reveals Pathways for Improving Biodiesel, Disease Resistance, and Reducing Waste Runoff WALNUT CREEK, CA-Soybean, one of the most important global sources of protein and oil, is now the first legume species with a published complete draft genome sequence. The sequence and its analysis appear in the January 14 edition of the journal Nature. The research team comprised 18 institutions, including the U.S. Department of Energy Joint Genome Institute (DOE JGI), the U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS), Purdue University and the University of North Carolina at Charlotte. The DOE, National Science Foundation, USDA and United Soybean Board supported the research. helix made of soybeans

9

Application of High Performance Computing to the DOE Joint Genomic...  

NLE Websites -- All DOE Office Websites (Extended Search)

Application of High Performance Computing to the DOE Joint Genomic Institute's Data Challenges January 25-26, 2010 DOE Joint Genome Institute, Walnut Creek, CA USA -by invitation...

10

DOE Joint Genome Institute: New Genomic Model Defines Microbes by  

NLE Websites -- All DOE Office Websites (Extended Search)

September 8, 2009 September 8, 2009 New Genomic Model Defines Microbes by Diet-Provides Tool for Tracking Environmental Change WALNUT CREEK, CA-In line with the U.S. Department of Energy (DOE) interest in characterizing the biotic factors involved in global carbon cycling, the DOE Joint Genome Institute (JGI) characterizes a diverse array of plants, microorganisms, and the communities in which they reside to inform options for reducing and stabilizing atmospheric greenhouse gases. Through a novel genomic approach detailed in the September 7 online edition and on the cover September 14 of the journal Proceedings of the National Academy of Sciences, an international team of scientists led by the University of New South Wales and the DOE JGI demonstrates how the microbial diversity of the oceans can be analyzed without necessarily

11

DOE Joint Genome Institute: Spikemoss Genome Offers New Paths...  

NLE Websites -- All DOE Office Websites (Extended Search)

5, 2011 Spikemoss Genome Offers New Paths for Biofuels Research--Bridges Plant Development Gap WALNUT CREEK, Calif.- It's not quite Christmas, but the DNA sequence of a small plant...

12

JGI - Distinguished Postdoctoral Fellow in Genomics  

NLE Websites -- All DOE Office Websites (Extended Search)

Distinguished Postdoctoral Fellow in Genomics The Department of Energy Joint Genome Institute (DOE JGI) in Walnut Creek, CA is soliciting Postdoctoral Fellows working in the...

13

DOE Joint Genome Institute: Genome of Simplest Animal Reveals Ancient  

NLE Websites -- All DOE Office Websites (Extended Search)

21, 2008 21, 2008 Genome of Simplest Animal Reveals Ancient Lineage, Confounding Array of Complex Capabilities WALNUT CREEK, CA-As Aesop said, appearances are deceiving-even in life's tiniest critters. From first detection in the 1880s, clinging to the sides of an aquarium, to its recent characterization by the U.S. Department of Energy Joint Genome Institute (DOE JGI), a simple and primitive animal, Trichoplax adhaerens, appears to harbor a far more complex suite of capabilities than meets the eye. The findings, reported in the August 21 online edition of the journal Nature, establish a group of organisms as a branching point of animal evolution and identify sets of genes, or a "parts list," employed by organisms that have evolved along particular branches.

14

DOE Joint Genome Institute: Exploring Standards to Advance Microbial...  

NLE Websites -- All DOE Office Websites (Extended Search)

July 9, 2009 Exploring Standards to Advance Microbial Genomics WALNUT CREEK, CA-Microbes contribute to manifold human endeavors ranging from bioenergy to agriculture to medicine....

15

DOE Joint Genome Institute: Scientists Publish Complete Genetic Blueprint  

NLE Websites -- All DOE Office Websites (Extended Search)

January 28, 2009 January 28, 2009 Scientists Publish Complete Genetic Blueprint of Key Biofuels Crop WALNUT CREEK, CA-Scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and several partner institutions have published the sequence and analysis of the complete genome of sorghum, a major food and fodder plant with high potential as a bioenergy crop. The genome data will aid scientists in optimizing sorghum and other crops not only for food and fodder use, but also for biofuels production. The comparative analysis of the sorghum genome appears in the January 29 edition of the journal Nature. Prized for its drought resistance and high productivity, sorghum is currently the second most prevalent biofuels crop in the United States, behind corn. Grain sorghum produces the same amount of ethanol per bushel

16

DOE Joint Genome Institute: Biofuel-Producing Bacteria, Insect Gut  

NLE Websites -- All DOE Office Websites (Extended Search)

June 29, 2009 June 29, 2009 Biofuel-Producing Bacteria, Insect Gut Microbes, ~ 70 other Projects Fill DOE Joint Genome Institute 2010 Pipeline WALNUT CREEK, CA-The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has selected 71 new genomic sequencing projects for its 2010 Community Sequencing Program (CSP)-a targeted sampling of the planet's biodiversity-to be characterized for bioenergy, climate, and environmental applications. JGI's Community Sequencing Program is the largest genomic sequencing effort in the world focused on nonmedical organisms, enabling scientists from universities and national laboratories to probe the hidden world of microbes and plants to tap nature's ingenuity for innovative solutions to the nation's major challenges in energy, climate, and environment. The

17

DOE Joint Genome Institute: DOE JGI Releases Expanded Version of  

NLE Websites -- All DOE Office Websites (Extended Search)

28, 2009 28, 2009 DOE JGI Releases Expanded Version of Phytozome.net: Clearinghouse for Comparative Plant Genomics Data WALNUT CREEK, CA-An enhanced version of Phytozome.net, a web portal for comparative plant genomics geared to advance biofuel, food, feed, and fiber research, has been released by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). Phytozome provides a central "hub" for web access to a rapidly growing number of plant genomes, and includes tools for visualization of plant genomes and associated annotations, sequence analysis, and bulk, as well as targeted, plant data retrieval. The gene families available in Phytozome, defined at several evolutionarily significant epochs, provide a framework for the transfer of functional information to important biofuel and

18

DOE Joint Genome Institute: DNA of Uncultured Organisms Sequenced Using  

NLE Websites -- All DOE Office Websites (Extended Search)

21, 2009 21, 2009 DNA of Uncultured Organisms Sequenced Using Novel Single-Cell Approach Download a Podcast of this Release! WALNUT CREEK, CA-Scientists from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Bigelow Laboratory for Ocean Sciences have assembled high quality, contamination-free draft genomes of uncultured biodegrading microorganisms using a novel single cell genome sequencing approach. This proof of principle study, published in the April 23 edition of the journal PLoS One, offers researchers a new method to access and decipher the information embedded in genomes of interest with only minute quantities of DNA. "Most of the microbial genomes sequenced to date are derived from organisms cultured in the laboratory," said DOE JGI Director Eddy Rubin.

19

Personnel | VIMSS - Virtual Institute for Microbial Stress and...  

NLE Websites -- All DOE Office Websites (Extended Search)

National Laboratory Email: KKeller@lbl.gov Phil Hugenholtz Microbial Ecology Program DOE Joint Genome Institute 2800 Mitchell Drive Bldg 400-404 Walnut Creek, CA 94598 USA...

20

DOE Joint Genome Institute: Next Gen Sequencing Technology Pinpoint  

NLE Websites -- All DOE Office Websites (Extended Search)

February 12, 2009 February 12, 2009 Next Gen Sequencing Technology Pinpoint "On-Off Switches" in Genomes WALNUT CREEK, CA-Scientists from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), Lawrence Berkeley National Laboratory, and the University of California, San Diego have developed a set of molecular tools that provide important insight into the complex genomes of multicellular organisms. The strategy promises to clarify the longstanding mystery of the role played by vast stretches of DNA sequence that do not code for the functional units-genes-that nevertheless may have a powerful regulatory influence. The research is described in the 12 February edition of the journal Nature. DOE bioenergy researchers have an interest in identifying these regulatory

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


21

DOE Joint Genome Institute: Establishing Standard Definitions for Genome  

NLE Websites -- All DOE Office Websites (Extended Search)

October 8, 2009 October 8, 2009 Establishing Standard Definitions for Genome Sequences Download a podcast of this release! WALNUT CREEK, CA-In 1996, researchers from major genome sequencing centers around the world convened on the island of Bermuda and defined a finished genome as a gapless sequence with a nucleotide error rate of one or less in 10,000 bases. This effectively set the quality target for the human genome effort and was quickly applied to other genome projects. If a genome sequence didn't meet this stringent criterion, it was simply considered a "draft." More than a decade later, researchers are finding that with the advent of the latest sequencing technologies the terms "draft" and "finished" are no longer sufficient to describe the varying levels of genome sequence

22

DOE Joint Genome Institute: Breaking down cellulose without blasting  

NLE Websites -- All DOE Office Websites (Extended Search)

4, 2011 4, 2011 Breaking down cellulose without blasting lignin: "Dry rot" genome offers lessons for biofuel pretreatment WALNUT CREEK, Calif.-Feared by realtors and homeowners alike, dry rot due to the fungus Serpula lacrymans causes millions of dollars worth of damage to homes and buildings around the world. This brown rot fungus' capacity to break down the cellulose in wood led to its selection for sequencing by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) in 2007, with the goal of identifying the enzymes involved in the degradation process and using the information to improve cellulosic biofuels production. Photo: A variant of Serpula lacrymans causes dry rot. (Dave Brown via Flickr/Creative Commons Attribution 2.0) As reported online July 14 in Science Express, an international team of

23

Communicating Genomics:GTL  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 24-26, 2010 Walnut Creek Marriott Walnut Creek, California iii Contents Speaker Presentations ......................................................................................... 1 Poster Presentations........................................................................................... 11 Attendees............................................................................................................. 67 Author Index ...................................................................................................... 75 iv Posters alphabetical by first author. *Presenting author 1 Speaker Presentations Abstracts alphabetical by speaker

24

Microbial Genomics Data from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer (OSTI)

As of March 2008, The Joint Genome Institute has released 296 Prokaryotic microbial sites, with 216 in finished status.

25

DOE Joint Genome Institute: Model Microbial Community for Studying  

NLE Websites -- All DOE Office Websites (Extended Search)

October 22, 2009 October 22, 2009 Model Microbial Community for Studying Expanding Dead Zones Characterized WALNUT CREEK, CA-Among the many changes in the ocean is the expansion of oxygen-deficient or oxygen minimum zones (OMZs), also known as dead zones, which affect the processes by which carbon is captured and sequestered on the seafloor and alter the microbial activities that impact the rate and magnitude of ocean carbon sequestration. Despite the importance of these effects, very little is known about the metabolism of OMZ microbes and how they respond to environmental changes. In the Oct. 23 issue of the journal Science, researchers from the University of British Columbia and the U.S. Department of Energy Joint Genome Institute (DOE JGI) describe the metagenome of an abundant but

26

DOE Joint Genome Institute 2008 Progress Report  

Science Conference Proceedings (OSTI)

While initially a virtual institute, the driving force behind the creation of the DOE Joint Genome Institute in Walnut Creek, California in the Fall of 1999 was the Department of Energy's commitment to sequencing the human genome. With the publication in 2004 of a trio of manuscripts describing the finished 'DOE Human Chromosomes', the Institute successfully completed its human genome mission. In the time between the creation of the Department of Energy Joint Genome Institute (DOE JGI) and completion of the Human Genome Project, sequencing and its role in biology spread to fields extending far beyond what could be imagined when the Human Genome Project first began. Accordingly, the targets of the DOE JGI's sequencing activities changed, moving from a single human genome to the genomes of large numbers of microbes, plants, and other organisms, and the community of users of DOE JGI data similarly expanded and diversified. Transitioning into operating as a user facility, the DOE JGI modeled itself after other DOE user facilities, such as synchrotron light sources and supercomputer facilities, empowering the science of large numbers of investigators working in areas of relevance to energy and the environment. The JGI's approach to being a user facility is based on the concept that by focusing state-of-the-art sequencing and analysis capabilities on the best peer-reviewed ideas drawn from a broad community of scientists, the DOE JGI will effectively encourage creative approaches to DOE mission areas and produce important science. This clearly has occurred, only partially reflected in the fact that the DOE JGI has played a major role in more than 45 papers published in just the past three years alone in Nature and Science. The involvement of a large and engaged community of users working on important problems has helped maximize the impact of JGI science. A seismic technological change is presently underway at the JGI. The Sanger capillary-based sequencing process that dominated how sequencing was done in the last decade is being replaced by a variety of new processes and sequencing instruments. The JGI, with an increasing number of next-generation sequencers, whose throughput is 100- to 1,000-fold greater than the Sanger capillary-based sequencers, is increasingly focused in new directions on projects of scale and complexity not previously attempted. These new directions for the JGI come, in part, from the 2008 National Research Council report on the goals of the National Plant Genome Initiative as well as the 2007 National Research Council report on the New Science of Metagenomics. Both reports outline a crucial need for systematic large-scale surveys of the plant and microbial components of the biosphere as well as an increasing need for large-scale analysis capabilities to meet the challenge of converting sequence data into knowledge. The JGI is extensively discussed in both reports as vital to progress in these fields of major national interest. JGI's future plan for plants and microbes includes a systematic approach for investigation of these organisms at a scale requiring the special capabilities of the JGI to generate, manage, and analyze the datasets. JGI will generate and provide not only community access to these plant and microbial datasets, but also the tools for analyzing them. These activities will produce essential knowledge that will be needed if we are to be able to respond to the world's energy and environmental challenges. As the JGI Plant and Microbial programs advance, the JGI as a user facility is also evolving. The Institute has been highly successful in bending its technical and analytical skills to help users solve large complex problems of major importance, and that effort will continue unabated. The JGI will increasingly move from a central focus on 'one-off' user projects coming from small user communities to much larger scale projects driven by systematic and problem-focused approaches to selection of sequencing targets. Entire communities of scientists working in a particular field, such as feeds

Gilbert, David

2009-03-12T23:59:59.000Z

27

The US Department of Energy Joint Genome Institute Microbial Genome Program  

E-Print Network (OSTI)

Institute A typical genome sequencing project AssemblyInstitute A typical genome sequencing project AssemblyJGI Microbial Sequencing US DOE Joint Genome Institute JGI

Lapidus, Alla

2005-01-01T23:59:59.000Z

28

Genomics of Climate Resilience (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Eldredge Bermingham of the Smithsonian Tropical Research Institute-Panama on "Genomics of climate resilience" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Bermingham, Eldredge [STRI-Panama

2013-03-27T23:59:59.000Z

29

New Approaches and Technologies to Sequence de novo Plant reference Genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Jeremy Schmutz of the HudsonAlpha Institute for Biotechnology on "New approaches and technologies to sequence de novo plant reference genomes" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Schmutz, Jeremy [HudsonAlpha Institute

2013-03-01T23:59:59.000Z

30

Communicating Genomics:GTL  

NLE Websites -- All DOE Office Websites (Extended Search)

Annual Annual DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 29-April 1, 2006 Embassy Suites Hotel and DOE Joint Genome Institute Walnut Creek, California iii Contents Agenda .................................................................................................................. iv Speaker Presentations . .........................................................................................1 Abtracts in order of presentation according to agenda (p. iv) Poster Presentations ..............................................................................................9 Posters alphabetical by first author. *Presenting author. Attendees...............................................................................................................75

31

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot August 13, 2012 -...

32

DOE Joint Genome Institute: Genes from Tiny Algae Shed Light on Big Role  

NLE Websites -- All DOE Office Websites (Extended Search)

April 9, 2009 April 9, 2009 Genes from Tiny Algae Shed Light on Big Role Managing Carbon in World's Oceans & Coping with Environmental Change WALNUT CREEK, CA-Scientists from two-dozen research organizations led by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Monterey Bay Aquarium Research Institute (MBARI) have decoded genomes of two algal strains, highlighting the genes enabling them to capture carbon and maintain its delicate balance in the oceans. These findings, from a team led by Alexandra Z. Worden of MBARI and published in the April 10 edition of the journal Science, will illuminate cellular processes related to algae-derived biofuels being pursued by DOE scientists. The study sampled two geographically diverse isolates of the photosynthetic

33

Joint Genome Institute (JGI) Projects at NERSC  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Genome Institute Joint Genome Institute (JGI) Joint Genome Institute (JGI) nicole-illumina-flowcell.jpg Key Challenges: Ensuring that there is a robust computational infrastructure for managing, storing and gleaning scientific insights from the torrent of data that constantly flows from the advanced sequencing platforms at the Department of Energy Joint Genome Institute (JGI). JGI sequencing capacity exceeds 40 billion DNA base pairs per year and is growing at a rate that exceeds computer hardware improvements, with exponential increases in computation and storage needed. JGI will generate about 1 petabyte of data in their first year as a NERSC partner; this is expected to double each year. Why it Matters: JGI is the primary production sequencing facility for the DOE. By revealing the genetic blueprint and fundamental principles that

34

DOE Joint Genome Institute: Unraveling the Threads: Simplest cotton genome  

NLE Websites -- All DOE Office Websites (Extended Search)

December 19, 2012 December 19, 2012 Unraveling the Threads: Simplest cotton genome offers clues for fiber improvements From the stockings decorating mantles to the new outfits in display windows calling to shoppers, cotton is woven into the fabric of the holiday season. For bioenergy researchers, however, fiber composition matters more than color and texture as each cotton strand is composed of more than two dozen coils of cellulose, a target biomass for next-generation biofuels. In the December 20, 2012 edition of Nature, an international consortium of researchers from 31 institutions including a team from the U.S. Department of Energy Joint Genome Institute (DOE JGI) present a high-quality draft assembly of the simplest cotton (Gossypium raimondii) genome. Additionally,

35

DOE Joint Genome Institute: JGI's Susannah Tringe Receives Prestigious...  

NLE Websites -- All DOE Office Websites (Extended Search)

Energy (DOE) Office of Science Early Career Research Program has awarded a grant to DOE Joint Genome Institute scientist Susannah Green Tringe to conduct genomic studies of...

36

Illumina Production Sequencing at the DOE Joint Genome Institute - Workflow and Optimizations  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy (DOE) Joint Genome Institute?s (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the DOE mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI?s Production Sequencing group, the Illumina Genome Analyzer pipeline has been established as one of three sequencing platforms, along with Roche/454 and ABI/Sanger. Optimization of the Illumina pipeline has been ongoing with the aim of continual process improvement of the laboratory workflow. These process improvement projects are being led by the JGI?s Process Optimization, Sequencing Technologies, Instrumentation& Engineering, and the New Technology Production groups. Primary focus has been on improving the procedural ergonomics and the technicians? operating environment, reducing manually intensive technician operations with different tools, reducing associated production costs, and improving the overall process and generated sequence quality. The U.S. DOE JGI was established in 1997 in Walnut Creek, CA, to unite the expertise and resources of five national laboratories? Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest ? along with HudsonAlpha Institute for Biotechnology. JGI is operated by the University of California for the U.S. DOE.

Tarver, Angela; Fern, Alison; Diego, Matthew San; Kennedy, Megan; Zane, Matthew; Daum, Christopher; Hack, Christopher; Tang, Eric; Deshpande, Shweta; Cheng, Jan-Fang; Roberts, Simon; Alexandre, Melanie; Harmon-Smith, Miranda; Lucas, Susan

2010-06-18T23:59:59.000Z

37

DOE JGI Secures Long-Term Lease on Production Genomics Facility  

NLE Websites -- All DOE Office Websites (Extended Search)

world's leading DNA sequencing centers in the DOE Joint Genome Institute," said Susan Rainey, Mayor of the City of Walnut Creek, Calif. "In our very own backyard, we can lay claim...

38

DOE Joint Genome Institute: Tringe on Popular Science's "Brilliant 10"  

NLE Websites -- All DOE Office Websites (Extended Search)

6, 2011 6, 2011 Tringe on Popular Science's "Brilliant 10" List WALNUT CREEK, Calif.-Susannah Green Tringe of the DOE Joint Genome Institute (DOE JGI) has been named one of 2011's "Brilliant 10," the annual list compiled by Popular Science magazine of top young researchers. In adding her name to the list, which appears in the October issue, the magazine recognized her $2.5 million grant from the DOE Early Career Research Program to study the role of microbial communities in restored wetlands in the San Francisco Bay-Delta region of California and their impact on long-term carbon sequestration. Bigelow's Dashiell Masland working Photo: Tringe wading into the Brilliant 10 list The Popular Science Brilliant 10 recognizes scientists and researchers

39

Improving biofuel feedstocks by modifying xylan biosynthesis (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Jane Lau of the Joint BioEnergy Institute on "Improving biofuel feedstocks by modifying xylan biosynthesis" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

Lau, Jane [JBEI

2013-03-01T23:59:59.000Z

40

Thousand Cankers of Black Walnut  

E-Print Network (OSTI)

Thousand Cankers Disease of Black Walnut How to Identify and Prevent the Spread of Thousand Cankers counties. Remember: Only YOU can help prevent the spread of thousand cankers disease! Black Walnuts Facts Native range of black walnut in the United States. Uses of Black Walnut Mature black walnuts grown

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


41

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Martinez, D. , et al. Genome sequencing and analysis of thegroup, the HudsonAlpha Genome Sequencing Center, will expandnext-genera- tion genome sequencing and add capabilities to

Gilbert, David

2009-01-01T23:59:59.000Z

42

DOE Joint Genome Institute: Opening New Frontiers: First Volume...  

NLE Websites -- All DOE Office Websites (Extended Search)

in the spirit of his goal of providing "light to the obscure," the Department of Energy Joint Genome Institute (DOE JGI) has published the initial "volume" of the Genomic...

43

DOE Joint Genome Institute: IMG ER Goes Primetime: Provides Expert...  

NLE Websites -- All DOE Office Websites (Extended Search)

that regulate our environment. Scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Biological Data Management and Technology Center...

44

Eukaryotic Genomics Data from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer (OSTI)

From the JGI webportal users can choose Eukaryotic genomes from a photo list, access the JGI FTP directories to download data files, use the Tree of Life navigation tool, or choose a genome and go directly to a website specific to that one genome. The individual sites include direct access to download sequence files, BLAST, search, view and navigate the genomic annotations.

45

DOE Joint Genome Institute: Mite-y Genomic Resources For Bioenergy Crop  

NLE Websites -- All DOE Office Websites (Extended Search)

23, 2011 23, 2011 Mite-y Genomic Resources For Bioenergy Crop Protection WALNUT CREEK/BERKELEY, Calif.-For a pest that isn't quite the size of a comma on a keyboard, the two-spotted spider mite can do a disproportionate amount of damage. These web-spinners extract the nutrients they need from leaves of more than a thousand different plant species, including bioenergy feedstocks and food staples. The cost of chemically controlling spider mites to counteract reduced harvest yields hovers around $1 billion annually, reflecting their significant economic impact. spider mite Photo: The web-spinning two-spotted spider mite was sequenced at the DOE JGI. (M. Grbic) With a 90-million nucleotide genome, the smallest of those that belong to the group of animals with external skeletons or arthropods, the two-spotted

46

DOE Joint Genome Institute: Same Fungus, Different Strains: A Comparative  

NLE Websites -- All DOE Office Websites (Extended Search)

3, 2011 3, 2011 Same Fungus, Different Strains: A Comparative Genomics Approach for Improved "Green" Chemical Production WALNUT CREEK, Calif.-Fungi play key roles in nature and are valued for their great importance in industry. Consider citric acid, a key additive in several foods and pharmaceuticals produced on a large-scale basis for decades with the help of the filamentous fungus Aspergillus niger. While A. niger is an integral player in the carbon cycle, it possesses an arsenal of enzymes that can be deployed in breaking down plant cell walls to free up sugars that can then be fermented and distilled into biofuel, a process being optimized by U.S. Department of Energy researchers. Susannah Tringe Photo: Aspergillus niger conidiospore by Kathie T. Hodges, Cornell.

47

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

biofuel production. Diatom Genome Helps Explain Their Success in Capturing Carbon Diatoms, mighty microscopic algae,

Gilbert, David

2009-01-01T23:59:59.000Z

48

DOE Joint Genome Institute: Breaking Biomass Better, DOE JGI...  

NLE Websites -- All DOE Office Websites (Extended Search)

12, 2010 Breaking Biomass Better: DOE JGI Sequences Wood Decaying Fungus to Advance Biofuels Prospects WALNUT CREEK, CA-One of the challenges in making cellulosic biofuels...

49

DOE Joint Genome Institute: Sentinel of Change: Water Flea Genome to  

NLE Websites -- All DOE Office Websites (Extended Search)

February 3, 2011 February 3, 2011 Sentinel of Change: Water Flea Genome to Improve Environmental Monitoring Capabilities WALNUT CREEK, Calif.-A tiny crustacean that has been used for decades to develop and monitor environmental regulations is the first of its kind to have its genetic code sequenced and analyzed-revealing the most gene-packed animal characterized to date. The information deciphered could help researchers develop and conduct real-time monitoring systems of the effects of environmental remediation efforts. Daphnia pulex (commonly called water flea) Photo: Dr. Jan Michels, Christian-Albrechts-University, Kiel Daphnia pulex (commonly called water flea) Considered a keystone species in freshwater ecosystems, the water flea, Daphnia pulex, is roughly the size of the equal sign on a keyboard. Its 200

50

Today, DOE's Joint Genome Institute (a  

NLE Websites -- All DOE Office Websites (Extended Search)

characterizing the basic principles and relationships underlying living systems. Social Impact: Armed with the DNA sequence of the human genome, scientists will be able to...

51

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

proteins for biofuel production. Trends in Mi- crobiology,could help improve biofuel production. Diatom Genome Helpsa key target. Current biofuel production meth- ods, such as

Gilbert, David

2009-01-01T23:59:59.000Z

52

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Paterson, A. , et al. The Sorghum bicolor genome and thethe 730-million nucleotide Sorghum bicolor sequence, and thesoybean, eucalyp- tus, sorghum, foxtail millet, cassava,

Gilbert, David

2009-01-01T23:59:59.000Z

53

DOE Joint Genome Institute: Trillions Served: Massive, Complex...  

NLE Websites -- All DOE Office Websites (Extended Search)

the number of burgers served has eclipsed the billion mark, while the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) will now serve up trillions of nucleotides of...

54

DOE Joint Genome Institute: Preparing for a Thaw: How Arctic...  

NLE Websites -- All DOE Office Websites (Extended Search)

Research) To answer this question, researchers from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), the Earth Sciences Division (ESD) within Berkeley Lab, and the...

55

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Genomics of cellulosic biofuels. Nature, 454 (7206):841-845,2008 Termite Bellies and Biofuels (Published in Smithsonian,in the quest for viable biofuels. An estimated 10,000 marine

Gilbert, David

2009-01-01T23:59:59.000Z

56

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

National Labora- tory (PNNL), and the HudsonAlpha InstituteLand JGI Paci?c Northwest National Laboratory (PNNL) Since2004, PNNL has collaborated with DOE JGI in the area of

Gilbert, David

2009-01-01T23:59:59.000Z

57

The US Department of Energy Joint Genome Institute Microbial Genome Program  

E-Print Network (OSTI)

Community Sequencing Program (CSP). 24 proposals accepted 10http://www.jgi.doe.gov/CSP/ US DOE Joint Genome InstituteGTL) Community Sequencing Program (CSP) JGI Internal Program

Lapidus, Alla

2005-01-01T23:59:59.000Z

58

DOE Joint Genome Institute: Rot's Unique Wood Degrading Machinery...  

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February 5, 2009 Rot's Unique Wood Degrading Machinery to be Harnessed for Better Biofuels Production WALNUT CREEK, CA-An international team led by scientists from the U.S....

59

Illumina Production Sequencing at the DOE Joint Genome Institute - Workflow and Optimizations  

E-Print Network (OSTI)

Production Sequencing at DOE Joint Genome Institute –U.S. Department of Energy (DOE) Joint Genome Institute’s (DNA sequence to support the DOE mission areas of renewable

Tarver, Angela

2010-01-01T23:59:59.000Z

60

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot August 13, 2012 - 2:33pm Addthis By developing a better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for them in times of drought. By developing a better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for them in times of drought. Charles Rousseaux Charles Rousseaux Senior Writer, Office of Science What Is A Weed It's also known as a mouse-ear cress. The scientific name is Arababidopsis thaliana.

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


61

DOE Joint Genome Institute: Peach Genome Offers Insights into Breeding  

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March 24, 2013 March 24, 2013 Peach Genome Offers Insights into Breeding Strategies for Biofuels Crops Rapidly growing trees like poplars and willows are candidate "biofuel crops" from which it is expected that cellulosic ethanol and higher energy content fuels can be efficiently extracted. Domesticating these crops requires a deep understanding of the physiology and genetics of trees, and scientists are turning to long-domesticated fruit trees for hints. The relationship between a peach and a poplar may not be obvious at first glance, but to botanists both trees are part of the rosid superfamily, which includes not only fruit crops like apples, strawberries, cherries, and almonds, but many other plants as well, including rose that gives the superfamily its name.

62

DOE Joint Genome Institute: DOE JGI Produces New QC Tool for Microbial  

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May 24, 2010 May 24, 2010 DOE JGI Produces New QC Tool for Microbial Genomes WALNUT CREEK, CA-More than a thousand microbial genomes have been sequenced at various sequencing centers in the past 15 years to better understand their roles in tasks ranging from bioenergy to health to environmental cleanup. Conservative estimates suggest roughly 10,000 microbial genomes will be publicly available within the next two years, but genomic standards have not caught up with the technological advances that have made the sequencing process faster and cheaper. As a result, the torrent of DNA sequences being released has varying levels of quality, which impacts researchers' ability to use this information. To assist in checking the quality of the microbial genomic DNA sequences generated before they are submitted to the federally funded public archive

63

Integrated Microbial Genomes (IMG) System from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer (OSTI)

The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and annotating genomes, genes and functions, individually or in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through quarterly releases. IMG is provided by the DOE-Joint Genome Institute (JGI) and is available from http://img.jgi.doe.gov. [Abstract from The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions; Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Natalia N. Ivanova and Nikos C. Kyrpides; Nucleic Acids Research, 2008, Vol. 36. (Database Issue) See also the companion system, Integrated Microbial Genomes with Microbiome Samples.

64

DOE Joint Genome Institute: Adaptable Button Mushroom Serves Up  

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8, 2012 8, 2012 Adaptable Button Mushroom Serves Up Biomass-Degrading Genes Critical to Managing the Planet's Carbon Stores The button mushroom occupies a prominent place in our diet and in the grocery store where it boasts a tasty multibillion-dollar niche, while in nature, Agaricus bisporus is known to decay leaf matter on the forest floor. Now, owing to an international collaboration of two-dozen institutions led by the French National Institute for Agricultural Research (INRA) and the U.S. Department of Energy Joint Genome Institute (DOE JGI), the full repertoire of A. bisporus genes has been determined. In particular, new work shows how its genes are actually deployed not only in leaf decay but also wood decay and in the development of fruiting bodies (the above ground part of the mushroom harvested for food). The work also

65

DOE Joint Genome Institute: DOE JGI Announces 2011 Community Sequencing  

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October 4, 2010 October 4, 2010 Bigger is Better: DOE JGI Announces 2011 Community Sequencing Program Portfolio The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has selected 35 new genomic sequencing projects for its 2011 Community Sequencing Program (CSP)-a targeted sampling of the planet's biodiversity-to be characterized for bioenergy and environmental applications. A sample of CSP 2011 projects *[see photo credits below] Supported by the Office of Biological and Environmental Research in the DOE Office of Science, the DOE JGI's Community Sequencing Program enables scientists from universities and national laboratories around the world to probe the hidden world of microbes and plants for innovative solutions to the nation's major challenges in energy, climate, and environment. This

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Closing Keynote Presentation on the Genomics of Energy and the Environment (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Steve Benner, a distinguished chemist at the Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology, provides the closing keynote address for the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Benner, Stephen [Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology

2012-03-22T23:59:59.000Z

67

DOE Joint Genome Institute: First Wild Grass Species and Model System for  

NLE Websites -- All DOE Office Websites (Extended Search)

February 10, 2010 February 10, 2010 First Wild Grass Species and Model System for Energy Crops Sequenced WALNUT CREEK, CA-As the U.S. Department of Energy (DOE) works toward developing sustainable sources of clean renewable energy, perennial grasses have emerged as major candidates for the commercial production of cellulosic biofuels from feedstocks. However, little is known about the specific biological traits of the grasses that might contribute to their usefulness for energy production, in part because such grasses typically have long lifecycles and possess large, complex genomes, making them difficult to study. Representative genomes for two of the three major subfamilies of grasses-those that include rice, maize, sorghum and sugar cane-have already been sequenced. Now in the February 11 edition of the journal

68

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

S, et al. Comparative genome sequencing of DrosophilaInternational Human Genome Sequencing Consortium. FinishingWhile NIH-funded genome sequencing activities largely

Gilbert, David

2005-01-01T23:59:59.000Z

69

Enhancer Identification through Comparative Genomics  

E-Print Network (OSTI)

through Comparative Genomics Axel Visel, James Bristow andWalnut Creek, CA 94598 USA. Genomics Division, MS 84-171,Len A. Pennacchio, Genomics Division, One Cyclotron Road, MS

Visel, Axel; Bristow, James; Pennacchio, Len A.

2006-01-01T23:59:59.000Z

70

doi:10.1093/nar/gkr947 The Genome Portal of the Department of Energy Joint Genome Institute  

E-Print Network (OSTI)

The Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility with massive-scale DNA sequencing and analysis capabilities dedicated to advancing genomics for bioenergy and environmental applications. Beyond generating tens of trillions of DNA bases annually, the Institute develops and maintains data management systems and specialized analytical capabilities to manage and interpret complex genomic data sets, and to enable an expanding community of users around the world to analyze these data in different contexts over the web. The JGI Genome Portal

Igor V. Grigoriev; Henrik Nordberg; Igor Shabalov; Andrea Aerts; Mike Cantor; David Goodstein; Alan Kuo; Simon Minovitsky; Roman Nikitin; Robin A. Ohm; Robert Otillar; Alex Poliakov; Igor Ratnere; Robert Riley; Tatyana Smirnova; Daniel Rokhsar; Inna Dubchak

2011-01-01T23:59:59.000Z

71

DOE Joint Genome Institute | U.S. DOE Office of Science (SC)  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute DOE Joint Genome Institute Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3251 F: (301)

72

JGI - 2009 Genome Sequencing Targets  

NLE Websites -- All DOE Office Websites (Extended Search)

July 2, 2008 July 2, 2008 Pine Tree, Boat-Boring Bivalve "Bugs", Duck Weed, Oil-Producing Microalgae, Stinkbird Gut, 40 Others Top DOE Joint Genome Institute 2009 Genome Sequencing Targets WALNUT CREEK, CA-In the continuing effort to tap the vast, unexplored reaches of the earth's microbial and plant domains for bioenergy and environmental applications, the DOE Joint Genome Institute (DOE JGI) has announced its latest portfolio of DNA sequencing projects that it will undertake in the coming year. The 44 projects, culled from nearly 150 proposals received through the Community Sequencing Program (CSP), represent over 60 billion nucleotides of data to be generated through this biodiversity sampling campaign-roughly the equivalent of 20 human genomes. "The scientific and technological advances enabled by the information

73

DOE Joint Genome Institute: Up from the Depths: How Bacteria...  

NLE Websites -- All DOE Office Websites (Extended Search)

to verify the predominant bacterial lineages capable of trapping carbon in this deep underwater region. "This study represents a pristine example for the use of single cell genome...

74

DOE Joint Genome Institute: 2013 DOE JGI Community Sequencing...  

NLE Websites -- All DOE Office Websites (Extended Search)

transposon mutagenesis (TnSeq), a method of generating large sets of random mutations in target DNA. These techniques will allow the DOE JGI to study in greater depth the genomes...

75

2012 U.S. Department of Energy: Joint Genome Institute: Progress Report  

Science Conference Proceedings (OSTI)

The mission of the U.S. Department of Energy Joint Genome Institute (DOE JGI) is to serve the diverse scientific community as a user facility, enabling the application of large-scale genomics and analysis of plants, microbes, and communities of microbes to address the DOE mission goals in bioenergy and the environment. The DOE JGI's sequencing efforts fall under the Eukaryote Super Program, which includes the Plant and Fungal Genomics Programs; and the Prokaryote Super Program, which includes the Microbial Genomics and Metagenomics Programs. In 2012, several projects made news for their contributions to energy and environment research.

Gilbert, David [DOE JGI Public Affairs Manager] [DOE JGI Public Affairs Manager

2013-01-01T23:59:59.000Z

76

DOE Joint Genome Institute. Relative Reference: Foxtail Millet Offers Clues  

NLE Websites -- All DOE Office Websites (Extended Search)

May 14, 2012 May 14, 2012 Relative Reference: Foxtail Millet Offers Clues for Assembling the Switchgrass Genome Arranging DNA fragments into a genome sequence that scientists can interpret is a challenge often compared to assembling a puzzle, except there is no box to provide an idea of what the picture is even supposed to be. Sometimes there's guidance in the form of other publicly-available DNA sequences from related organisms that can be used to guide the assembly process, but its usefulness depends on how closely related any two sequences are to one another. For example, a reference genome might be so distantly related from the one being assembled, it would be akin to comparing a Model-T to a contemporary hybrid car. Foxtail millet Photo: Foxtail millet (S. italica) panicle by Katrien Devos, University of

77

Walnuts  

NLE Websites -- All DOE Office Websites (Extended Search)

person's skin, so that it is customary to gather the nuts and spread them upon an exposed flat surface, such as a shed roof, until the hull has become black and mushy. The nut...

78

Diamond Walnut Biomass Facility | Open Energy Information  

Open Energy Info (EERE)

Walnut Biomass Facility Walnut Biomass Facility Jump to: navigation, search Name Diamond Walnut Biomass Facility Facility Diamond Walnut Sector Biomass Location San Joaquin County, California Coordinates 37.9175935°, -121.1710389° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":37.9175935,"lon":-121.1710389,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

79

Genomic Speciation and Adaptation in Aquilegia (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Scott Hodges of the University of California, Santa Barbara gives a presentation on "Genomic Speciation and Adaptation in Aquilegia" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Hodges, Scott [University of California, Santa Barbara

2011-03-23T23:59:59.000Z

80

Genomics of Extinct and Endangered Species (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Stephen Shuster of Penn State University gives a presentation on "Genomics of Extinct and Endangered Species" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Shuster, Stephen [Penn State University

2011-03-23T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


81

JGI CSP Delivers First Moss Genome  

NLE Websites -- All DOE Office Websites (Extended Search)

13, 2007 13, 2007 DOE JGI Community Sequencing Program Delivers First Moss Genome WALNUT CREEK, CA--Messages from nearly a half-billion years ago, conveyed via the inventory of genes sequenced from a present-day moss, provide clues about the earliest colonization of dry land by plants. The U.S. Department of Energy Joint Genome Institute (DOE JGI) was among the leaders of an international effort uniting more than 40 institutions to complete the first genome sequencing project of a nonvascular land plant, the moss Physcomitrella patens. The team's insights into the code that enabled this seminal emergence and dominance of land by plants are published December 13 online in Science Express. Scanning electron micrograph of Physcomitrella patens gametophores (moss shoots).

82

U.S Department of Energy Joint Genome Institute Progress Report  

NLE Websites -- All DOE Office Websites (Extended Search)

S Department of Energy S Department of Energy Joint Genome Institute Progress Report 2009 Representatives of the four DOE JGI genome programs (plant, fungal, metagenome, and microbe) grace the cover of this annual report. Three of the organisms were among the 81 projects selected in 2009 for the 2010 Community Sequencing Program portfolio. Photo credits, clockwise from bottom left: Brachypodium distachyon by Roy Kaltschmidt, LBNL; Amanita thiersii fungus by Joe McFarland; Cow rumen metagenome by Gemma Henderson, AgResearch; Soybeans by Roy Kaltschmidt, LBNL; Zymomonas mobilis Z4 by Katherine Pappas, University of Athens U.S Department of Energy Joint Genome Institute Progress Report 2009 DOE JGI Mission . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 Director's

83

Keynote Presentation: Genome Beat (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Carl Zimmer, a reporter for the New York Times, speaks on "The Genome Beat," the opening keynote presentation at the JGI User 7th Annual Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, Calif

Zimmer, Carl [New York Times

2012-03-20T23:59:59.000Z

84

JGI Visiting Scientist Program The DOE Joint Genome Institute Visiting Scientist Program (VSP)  

NLE Websites -- All DOE Office Websites (Extended Search)

Visiting Scientist Program Visiting Scientist Program The DOE Joint Genome Institute Visiting Scientist Program (VSP) provides an opportunity for researchers who are seeking to build upon their line of scientific inquiry by leveraging JGI experimental, computational, and personnel resources for genomic research and sequence-based science. Projects include de novo generation of genome data, assistance in interpreting and/or building on an existing data set, or the refining of new technology (e.g., single-cell genomics; metagenomics, etc.). Length of stay depends on complexity of the project being considered and availability of data and other resources. Investigators, post docs, and graduate students participating in approved JGI User Projects are also invited to apply for on-site access to JGI

85

DOE Joint Genome Institute: Beyond Genomics-DOE JGI leads method  

NLE Websites -- All DOE Office Websites (Extended Search)

September 20, 2010 September 20, 2010 Beyond Genomics-DOE JGI leads method validation effort in Metatranscriptomics Ultra-high throughput DNA sequencing platforms that allow researchers to sequence the genetic code of organisms at lightning speed for just pennies are enabling more focused genomic studies on a massive scale. One example involves the transcriptome, a tiny but complex fraction of the complete genetic sequence that is transcribed into different types of RNA molecules. These molecules provide researchers with information about what genes are turned on and off under various conditions, and what the functions of these genes are. Researchers focus on the messenger RNA (mRNA), which transfer the genetic information from the DNA to functional proteins. The bulk of cellular RNA

86

Genomics of Plant-based Biofuels in the Journal Nature  

NLE Websites -- All DOE Office Websites (Extended Search)

3, 2008 3, 2008 DOE JGI Director Eddy Rubin Highlights the Genomics of Plant-based Biofuels in the Journal Nature WALNUT CREEK, CA-Genomics is accelerating improvements for converting plant biomass into biofuel-as an alternative to fossil fuel for the nation's transportation needs, reports Eddy Rubin, Director of the U.S. Department of Energy Joint Genome Institute (DOE JGI), in the August 14 edition of the journal Nature. In "Genomics of cellulosic biofuels," Rubin lays out a path forward for how emerging genomic technologies will contribute to a substantially different biofuels future as compared to the present corn-based ethanol industry-and in part mitigate the food-versus-fuel debate. The Nature Review is available for download (by subscription) at http://www.nature.com/.

87

Walnut Capital Acquisitions | Open Energy Information  

Open Energy Info (EERE)

Acquisitions Acquisitions Jump to: navigation, search Name Walnut Capital Acquisitions Place Pittsburgh, Pennsylvania Zip 15232 Product Walnut Capital Acquisitions is the project development arm of Walnut Capital, one of Pittsburgh's largest and fastest growing real estate management, development and brokerage companies. Coordinates 40.438335°, -79.997459° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":40.438335,"lon":-79.997459,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

88

DOE Joint Genome Institute: A DOE Office of Science User Facility of  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute DOE Joint Genome Institute Latest News R. irregularis December 20, 2013 A gluttonous plant reveals how its cellular power plant devours foreign DNA. Amborella trichopoda, a sprawling shrub that grows on just a single island in the remote South Pacific, is the only plant in its family and genus. It is also one of the oldest flowering plants, having branched off from others about 200 million years ago. more... R. irregularis November 25, 2013 How Scavenging Fungi Became a Plant's Best Friend. Glomeromycota is an ancient lineage of fungi that has a symbiotic relationship with roots that goes back nearly 420 million years to the earliest plants. More than two thirds of the world's plants depend on this soil-dwelling symbiotic fungus to survive, including critical agricultural crops such as wheat,

89

U.S. Department of Energy Joint Genome Institute Progress Report  

NLE Websites -- All DOE Office Websites (Extended Search)

U.S. Department of Energy Joint Genome Institute Progress Report Sequencing the world of possibilities for energy and the environment Table of Contents DOE JGI Mission ........................................................ 7 Director's Perspective.................................................... 8 DOE Mission Areas ................................................... 12 By the Numbers.......................................................... 14 User Map ............................................................ 15 Scientific Literature/Impact ................................ 16 DOE JGI Sequence Output .............................. 17 DOE JGI Team Science Realized ....................... 18 DOE JGI User Community ............................... 19 User Meeting 5 ...........................................................

90

Science Videos from DOE's Joint Genome Institute on YouTube  

DOE Data Explorer (OSTI)

DOE's Joint Genome Institute began posting lab-produced videos on YouTube in September of 2008. Many of JGI's YouTube videos are of speakers' presentations at meetings and workshops; others may be promotional or educational in nature. They are freely available to the public for viewing and can be interactively shared or commented on. Users can subscribe and be notified when new videos are posted to their specific area of interest.

91

Genomic and Systems Biology Analyses of Social Behavior or Evolutionary Genomic Analyses of Insect Society: Eat, Drink, and Be Scary (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gene Robinson of the University of Illinois on "Genomic and Systems Biology Analyses of Social Behavior" at the 6th Annual Genomics of Energy & Environment Meeting on March 23, 2011

Robinson, Gene

2011-03-23T23:59:59.000Z

92

The Sunflower Genome and its Evolution (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Loren Rieseberg from the University of British Columbia on "The Sunflower Genome and its Evolution" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, California.

Rieseberg, Loren [University of British Columbia

2012-03-21T23:59:59.000Z

93

Entering the Era of Mega-genomics ( JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Michael Schatz from Cold Spring Harbor Laboratory on "Entering the Era of Mega-genomics" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif.

Schatz, Michael C [Cold Spring Harbor Laboratory

2012-03-21T23:59:59.000Z

94

Using Genomics to Dissect Seed Development (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment Meeting)  

Science Conference Proceedings (OSTI)

Robert Goldberg of UCLA presents "Using Genomics to Dissect Seed Development" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Goldberg, Robert [UCLA

2012-03-21T23:59:59.000Z

95

Walnut: a unified cloud object store  

Science Conference Proceedings (OSTI)

Walnut is an object-store being developed at Yahoo! with the goal of serving as a common low-level storage layer for a variety of cloud data management systems including Hadoop (a MapReduce system), MObStor (a multimedia serving system), and PNUTS (an ... Keywords: cloud storage, hybrid object store, paxos-based replication

Jianjun Chen; Chris Douglas; Michi Mutsuzaki; Patrick Quaid; Raghu Ramakrishnan; Sriram Rao; Russell Sears

2012-05-01T23:59:59.000Z

96

DOE Joint Genome Institute. Pulp NonFiction: Fungal Analysis Reveals Clues  

NLE Websites -- All DOE Office Websites (Extended Search)

March 22, 2012 March 22, 2012 Pulp NonFiction: Fungal Analysis Reveals Clues for Targeted Biomass Deconstruction Without fungi and microbes to break down dead trees and leaf litter in nature, the forest floor might look like a scene from TV's "Hoarders." Ceriporiopsis subvermispora mycelium on wood Photo: Scanning electron micrograph of Ceriporiopsis subvermispora mycelium on wood. (R. Blanchette, University of Minnesota) Massive-scale genome sequencing projects supported by the U.S. Department of Energy (DOE) and being carried out at the DOE Joint Genome Institute (JGI) highlight the importance of learning how the cellulose, hemicellulose and lignin that serve as a plant's infrastructure can be broken down by these forest organisms to extract needed nutrients. Among the fungi being

97

DOE Joint Genome Institute: A DOE Office of Science User Facility of  

NLE Websites -- All DOE Office Websites

MyJGISubmit ProposalsInternalEmergency InfoCareers MyJGISubmit ProposalsInternalEmergency InfoCareers JGI website People Go Genomes Project List User Programs Sequencing Informatics Systems Education News & Publications Events About Us JGI Home DOE Joint Genome Institute Latest News R. irregularis December 20, 2013 A gluttonous plant reveals how its cellular power plant devours foreign DNA. Amborella trichopoda, a sprawling shrub that grows on just a single island in the remote South Pacific, is the only plant in its family and genus. It is also one of the oldest flowering plants, having branched off from others about 200 million years ago. more... R. irregularis November 25, 2013 How Scavenging Fungi Became a Plant's Best Friend. Glomeromycota is an ancient lineage of fungi that has a symbiotic relationship with roots that

98

DOE Joint Genome Institute: Making up the gut microbiome is a host-driven  

NLE Websites -- All DOE Office Websites (Extended Search)

November 16, 2010 November 16, 2010 Making up the gut microbiome is a host-driven project Baking sourdough bread requires a starter, and so do mammalian guts, which are first colonized by microbial communities from the mother and then acquire more microbes over time. These gut microbial communities are important for maintaining health and combating disease, and it's why the Human Microbiome Project launched by the National Institutes of Health in 2008 is studying the microbial communities that populate the human body by sequencing them and assembling a reference catalog, a project that involves researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). G. beringei Photo: G. beringei by rbleib While the HMP was getting off the ground, DOE JGI collaborator Howard

99

Walnut, California: Energy Resources | Open Energy Information  

Open Energy Info (EERE)

Walnut, California: Energy Resources Walnut, California: Energy Resources Jump to: navigation, search Equivalent URI DBpedia Coordinates 34.0202894°, -117.8653386° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":34.0202894,"lon":-117.8653386,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

100

Optimization the Preparation of Activated Carbon Form Walnut Shell ...  

Science Conference Proceedings (OSTI)

The study supported the potentiality of comprehensive utilization of walnut shell and the ... An Experimental Investigation of a Flue Gas Recirculation System for ...

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


101

The Genome of Selaginella: A Remnant of an Ancient Vascular Plant Lineage (JGI Seventh Annual User Meeting, 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Jody Banks from Purdue University on "The Genome of Selaginella, a Remnant of an Ancient Vascular Plant Lineage" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif.

Banks, Jody [Purdue University

2012-03-21T23:59:59.000Z

102

The Challenges and Opportunities for Extending Plant Genomics to Climate (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

David Weston of Oak Ridge National Laboratory on "The challenges and opportunities for extending plant genomics to climate" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Weston, David [ORNL

2013-03-01T23:59:59.000Z

103

Uncovering Transcriptional Circuits in Arabidoposis by Functional Genomics (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Jose Pruneda-Paz of UC San Diego on "Uncovering Transcriptional Circuits in Arabidopsis by Functional Genomics" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

Pruneda-Paz, Jose [UC San Diego

2013-03-01T23:59:59.000Z

104

Genomic Analysis of Natural Variation for Seed and Plant Size in Maize ( JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Shawn Kaeppler from the University of Wisconsin-Madison on "Genomic Analysis of Biofuel Traits in Maize and Switchgrass" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

Kaeppler, Shawn [University of Wisconsin, Madison

2012-03-21T23:59:59.000Z

105

Association Genetics of Populus trichocarpa or Resequencing in Populus: Towards Genome Wide Association Genetics (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gerry Tuskan of Oak Ridge National Laboratory on "Resequencing in Populus: Towards Genome Wide Association Genetics" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Tuskan, Gerry

2011-03-23T23:59:59.000Z

106

First Annual U.S. Department of Energy Office of Science Joint Genome Institute User Meeting  

E-Print Network (OSTI)

relatives for genome sequencing (A. lyrata and CapsellaThis is our rationale for genome sequencing of a free-livingof de Novo Genome Sequencing with 454 Technology Stephen

Various

2006-01-01T23:59:59.000Z

107

DOE Joint Genome Institute: A Microbiological "Template" for Mitigating  

NLE Websites -- All DOE Office Websites (Extended Search)

July 1, 2011 July 1, 2011 A Microbiological "Template" for Mitigating Methane Emissions WALNUT CREEK, Calif.-Carbon dioxide may be the most name-dropped greenhouse gas, but methane is 20 times more potent. In 2009, the U.S. Environmental Protection Agency calculated that 20 percent of the nation's human-related methane emissions were attributable to livestock digestive processes. In Australia, livestock emissions account for 12 percent of the country's total greenhouse gas emissions. Wallaby Photo:Wallaby, photo by Mehgan Murphy, Smithsonian's National Zoo. To understand how methane is produced in livestock, an international team of scientists including researchers at Australia's Commonwealth Scientific and Industrial Research Organisation (CSIRO) and the DOE JGI

108

DOE Joint Genome Institute: How Now, Inside the Cow: Nearly 30,000 Novel  

NLE Websites -- All DOE Office Websites (Extended Search)

January 27, 2011 January 27, 2011 How Now, Inside the Cow: Nearly 30,000 Novel Enzymes for Biofuel Production Improvements To download Cow Rumen data, go to: http://portal.nersc.gov/project/jgimg/CowRumenRawData/submission/ WALNUT CREEK, Calif.-Cows eat grass-this has been observed for eons. From this fibrous diet consisting mainly of the tough to degrade plant cell wall materials cellulose and hemicellulose, substances of no nutritional value to most animals, ruminants manage to extract all they need to nourish themselves, their progeny and their keepers. And now, the cow, or rather the network of organisms working unseen in the cow's forestomach or rumen, is providing researchers with vital information that may someday accelerate the large-scale deployment of biofuels. This will offer a

109

DOE Joint Genome Institute: Salt-loving Microbe Provides New Enzymes for  

NLE Websites -- All DOE Office Websites (Extended Search)

June 30, 2011 June 30, 2011 Salt-loving Microbe Provides New Enzymes for the Production of Next Gen Biofuels WALNUT CREEK, Calif.-In order to realize the full potential of advanced biofuels that are derived from non-food sources of lignocellulosic biomass-e.g., agricultural, forestry, and municipal waste, and crops such as poplar, switchgrass and miscanthus-new technologies that can efficiently and cost-effectively break down this biomass into simple sugars are required. Existing biomass pretreatment technologies are typically derived from the pulp and paper industry and rely on dilute acids and bases to break down the biomass. The treated biomass product is then exposed to biological catalysts, or enzymes, to liberate the sugars. Eddy Rubin and Tao Zhang Photo:Tao Zhang (left), and Eddy Rubin (right).

110

DOE Joint Genome Institute: Fungal Map of Mutations Key to Increasing  

NLE Websites -- All DOE Office Websites (Extended Search)

September 1, 2009 September 1, 2009 Fungal Map of Mutations Key to Increasing Enzyme Production for Bioenergy Use Download a podcast of this release! WALNUT CREEK, CA-In half a century, one fungus has gone from being the bane of the Army quartermasters' existence in the Pacific to industry staple and someday, as part of the U.S. Department of Energy's mission to promote national energy security through clean, renewable energy development, a biofuel producers' best friend. Trichoderma reesei's makeover is due in part to scientific explorations that led to the development of mutant fungal strains that produce large quantities of biomass-degrading enzymes. T. reesei Image: T. reesei, courtesy of Irma Salovuori, VTT Biotechnology Now an international team of researchers led by scientists at the DOE Joint

111

DOE Joint Genome Institute: Advancing Next Gen Biofuels by Turning Up the  

NLE Websites -- All DOE Office Websites (Extended Search)

October 2, 2011 October 2, 2011 Advancing Next Gen Biofuels by Turning Up the Heat on Biomass Pretreatment Processes WALNUT CREEK, Calif.-The nation's Renewable Fuels Standard calls for annual production of 36 billion gallons of biofuel by 2022. One of the biggest hurdles to achieving this goal lies in optimizing the multistep process involved in breaking down plant biomass and then converting it into fermentable sugars that can be refined into fuel for our transportation needs. To overcome this challenge, the U.S. Department of Energy supports several projects focused on identifying enzymes from fungi and microbes such as cellulases-that breakdown plant cell walls-and heat-tolerant industrial-strength host cell systems to drive these reactions. Photo: The thermophilic fungus M. thermophila

112

Genomics, Gene Expression and Other Studies in Soybean Rust  

E-Print Network (OSTI)

Joint Genome Institute Genomics, Gene Expression and otherRust Martha Lucía Posada-Buitrago Ph.D Genomics DivisionEvolutionary Genomics DOE- Joint Genome Institute Lawrence

Posada-Buitrago, Martha Lucia

2005-01-01T23:59:59.000Z

113

Illumina GA IIx& HiSeq 2000 Production Sequenccing and QC Analysis Pipelines at the DOE Joint Genome Institute  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy (DOE) Joint Genome Institute's (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI's Production Sequencing group, a robust Illumina Genome Analyzer and HiSeq pipeline has been established. Optimization of the sesequencer pipelines has been ongoing with the aim of continual process improvement of the laboratory workflow, reducing operational costs and project cycle times to increases ample throughput, and improving the overall quality of the sequence generated. A sequence QC analysis pipeline has been implemented to automatically generate read and assembly level quality metrics. The foremost of these optimization projects, along with sequencing and operational strategies, throughput numbers, and sequencing quality results will be presented.

Daum, Christopher; Zane, Matthew; Han, James; Kennedy, Megan; San Diego, Matthew; Copeland, Alex; Li, Mingkun; Lucas, Susan

2011-01-31T23:59:59.000Z

114

Diatom Genome Helps Explain Their Great Diversity and Success in Trapping  

NLE Websites -- All DOE Office Websites (Extended Search)

5, 2008 5, 2008 Diatom Genome Helps Explain Their Great Diversity and Success in Trapping Excess Carbon in Oceans WALNUT CREEK, CA-Diatoms, mighty microscopic algae, have profound influence on climate, producing 20 percent of the oxygen we breathe by capturing atmospheric carbon and in so doing, countering the greenhouse effect. Since their evolutionary origins these photosynthetic wonders have come to acquire advantageous genes from bacterial, animal and plant ancestors enabling them to thrive in today's oceans. These findings, based on the analysis of the latest sequenced diatom genome, Phaeodactylum tricornutum, are published in 15 October edition of the journal Nature by an international team of researchers led by the U.S. Department of Energy Joint Genome Institute (DOE JGI) and the Ecole Normale Supérieure of

115

Genome-Scale Discovery of Cell Wall Biosynthesis Genes in Populus (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Wellington Muchero from Oak Ridge National Laboratory gives a talk titled "Discovery of Cell Wall Biosynthesis Genes in Populus" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Muchero, Wellington [Oak Ridge National Laboratory

2012-03-22T23:59:59.000Z

116

Robotic Enrichment Processing of Roche 454 Titanium Emlusion PCR at the DOE Joint Genome Institute  

E-Print Network (OSTI)

of Roche 454 Titanium Emulsion PCR at the DOE Joint GenomeEnrichment of emulsion PCR product is the most laborious andand 2X Enrichment Emulsion PCR Emulsion Breaking Enhancing

Hamilton, Matthew

2010-01-01T23:59:59.000Z

117

DOE Systems Biology Knowledgebase (KBASE) (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Adam Arkin from Berkeley Lab on the DOE Systems Biology Knowledgebase (KBASE) at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

Arkin, Adam [LBNL

2012-03-21T23:59:59.000Z

118

Walnut Wind Project Wind Farm | Open Energy Information  

Open Energy Info (EERE)

Walnut Wind Project Wind Farm Walnut Wind Project Wind Farm Jump to: navigation, search Name Walnut Wind Project Wind Farm Facility Walnut Wind Project Sector Wind energy Facility Type Commercial Scale Wind Facility Status In Service Owner MidAmerican Energy Developer EnXco Energy Purchaser MidAmerican Energy Location Pottawattamie County IA Coordinates 41.484094°, -95.185339° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":41.484094,"lon":-95.185339,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

119

Genomics Encyclopedia of Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB): a resource for microsymbiont genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Wayne Reeve of Murdoch University on "Genomics Encyclopedia of Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB): a resource for microsymbiont genomes" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Reeve, Wayne [Murdoch University

2013-03-01T23:59:59.000Z

120

Ocean Viruses: Tiny entities with Global Impacts ( JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Matt Sullivan from the University of Arizona on "Ocean Viruses: Tiny Entities with Global Impacts" at the 7th Annual Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, Calif.

Sullivan, Matthew B [University of Arizona

2012-03-22T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


121

Reprogramming Bacteria to Seek and Destroy Small Molecules (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Justin Gallivan, of Emory University presents a talk titled "Reprogramming Bacteria to Seek and Destroy Small Molecules" at the JGI User 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

Gallivan, Justin [Emory University

2012-03-21T23:59:59.000Z

122

Regulation of Flowering in Brachypodium distachyon (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Rick Amasino of the University of Wisconsin on "Regulation of Flowering in Brachypodium distachyon" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Amasino, Rick [University of Wisconsin

2013-03-01T23:59:59.000Z

123

Strange Tails: Viral Discovery & Deep Sequencing (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Joe DeRisi of UC San Francisco on "Strange Tails: Viral discovery & deep sequencing" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

DeRisi, Joe [UCSF

2013-03-01T23:59:59.000Z

124

Part Mining for Synthetic Biology (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Chris Voigt from MIT delivers the opening keynote on "Part Mining for Synthetic Biology" at the 8th Annual Genomics of Energy & Environment Meeting on March 26, 2013 in Walnut Creek, Calif.

Voigt, Chris [MIT

2013-03-01T23:59:59.000Z

125

PMI: Plant-Microbe Interfaces (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Christopher Schadt of Oak Ridge National Laboratory on "Plant-Microbe Interactions" in the context of poplar trees at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 held in Walnut Creek, Calif.

Schadt, Christopher [ORNL

2013-03-01T23:59:59.000Z

126

Cluster Overview of Archaeal Life (COAL) from the DOE Joint Genome Institute  

DOE Data Explorer (OSTI)

COAL is an acronym for Cluster Overview of Archaeal Life. The purpose of COAL is to visualize protein orthology and to relate orthology with additional information derived from their genomes. This information includes phylogeny, ecotype, metabolism, thermal preference and aerobicity. The protein orthology networks are also subclustered, when possible, using a bipartioning approach based on spectral clustering. COAL clusters are of three types; root, stem and leaf. Enter a cluster number into the Cluster box on the Main COAL page at http://coal.jgi-psf.org/coal/ and click Update. The cluster appears as a network of nodes (proteins) connected by edges representing the orthology. Various information about the cluster will be loaded below the applet, along with information of the individual proteins. Proteins can be highlighted according to the phylogenetic placement of their genomes. Currently, there are four categories of metadata in COAL, oxygen usage (e.g. aerobe, anaerobe), Metabolism (e.g. Chemoorganoheterotroph, Chemolithoautotroph), thermal preference (e.g. hyperthermophile, mesophile) and ecotype (e.g. marine, aquatic).[Taken with liberal editing from the COAL Help page.

127

Algal Functional Annotation Tool from the DOE-UCLA Institute for Genomics and Proteomics  

DOE Data Explorer (OSTI)

The Algal Functional Annotation Tool is a bioinformatics resource to visualize pathway maps, identify enriched biological terms, or convert gene identifiers to elucidate biological function in silico. These types of analysis have been catered to support lists of gene identifiers, such as those coming from transcriptome gene expression analysis. By analyzing the functional annotation of an interesting set of genes, common biological motifs may be elucidated and a first-pass analysis can point further research in the right direction. Currently, the following databases have been parsed, processed, and added to the tool:

  • Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathways Database
  • MetaCyc Encyclopedia of Metabolic Pathways
  • Panther Pathways Database
  • Reactome Pathways Database
  • Gene Ontology
  • MapMan Ontology
  • KOG (Eukaryotic Clusters of Orthologous Groups)
  • Pfam
  • InterPro

Lopez, David

128

Metabolic Engineering of Clostridium thermocellum for Biofuel Production (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Adam Guss of Oak Ridge National Lab on "Metabolic engineering of Clostridium thermocellum for biofuel production" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

Guess, Adam [ORNL

2013-03-01T23:59:59.000Z

129

Assembly-driven metagenomics of a hypersaline microbial ecosystem (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Eric Allen of Scripps and UC San Diego on "Assembly-driven metagenomics of a hypersaline microbial ecosystem" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Allen, Eric [Scripps and UCSD

2013-03-01T23:59:59.000Z

130

Network as Discovery Instrument: A Quick-Start Guide (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Gregory Bell of Berkeley Lab on "Network as discovery instrument: a Quick-Start Guide" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

Bell, Gregory [Berkeley Lab

2013-03-01T23:59:59.000Z

131

Succession of Phylogeny and Function During Plant Litter Decomposition (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Eoin Brodie of Berkeley Lab on "Succession of phylogeny and function during plant litter decomposition" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Brodie, Eoin [Berkeley Lab

2013-03-01T23:59:59.000Z

132

Biodiversity Monitoring Using NGS Approaches on Unusual Substrates (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Tom Gilbert of the Natural History Museum of Denmark on "Biodiversity monitoring using NGS approaches on unusual substrates" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

Gilbert, Tom [National History Museum of Denmark

2013-03-01T23:59:59.000Z

133

Modulation of Root Microbiome Community Assembly by the Plant Immune Response (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Sarah Lebeis of University of North Carolina on "Modulation of root microbiome community assembly by the plant immune response" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

Lebeis, Sarah [University of North Carolina

2013-03-01T23:59:59.000Z

134

Delineating Molecular Interaction Mechanisms in an In Vitro Microbial-Pant Community (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Peter Larsen of Argonne National Lab on "Delineating molecular interaction mechanisms in an in vitro microbial-plant community" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

Larsen, Peter [Argonne

2013-03-01T23:59:59.000Z

135

Synthetic Metagenomics: Converting digital information back to Biology (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Sam Deutsch of the DOE JGI on "Synthetic Metagenomics: Converting digital information back to Biology" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

Deutsch, Sam [DOE Joint Genome Institute

2013-03-01T23:59:59.000Z

136

Genetic Regulation of Grass Biomass Accumulation and Biological Conversion Quality (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Sam Hazen of the University of Massachusetts on "Genetic Regulation of Grass Biomass Accumulation and Biological Conversion Quality" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Hazen, Sam [University of Massachusetts

2013-03-01T23:59:59.000Z

137

TARA OCEANS: A Global Analysis of Oceanic Plankton Ecosystems (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Eric Karsenti of EMBL delivers the closing keynote on "TARA OCEANS: A Global Analysis of Oceanic Plankton Ecosystems" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

Karsenti, Eric [EMBL Heidelberg

2013-03-01T23:59:59.000Z

138

Natural variation in Brachypodium disctachyon: Deep Sequencing of Highly Diverse Natural Accessions (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Sean Gordon of the USDA on "Natural variation in Brachypodium disctachyon: Deep Sequencing of Highly Diverse Natural Accessions" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Gordon, Sean [USDA

2013-03-01T23:59:59.000Z

139

Evolutionary Perspectives on Diversity of Lignocellulose Decay Mechanisms in Basidionycetes (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

David Hibbett from Clark University on "Evolutionary Perspectives on Diversity of Lignocellulose Decay Mechanisms in Basidiomycetes" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, California.

Hibbett, David [Clark University

2012-03-21T23:59:59.000Z

140

CyanoGEBA: A Better Understanding of Cynobacterial Diversity through Large-scale Genomics (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Patrick Shih, representing both the University of California, Berkeley and JGI, gives a talk titled "CyanoGEBA: A Better Understanding of Cynobacterial Diversity through Large-scale Genomics" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Shih, Patrick [Kerfeld Lab, UC Berkeley and JGI

2012-03-22T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


141

Omics in the Arctic: Genome-enabled Contributions to Carbon Cycle Research in High-Latitude Ecosystems (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Stan Wullschleger of Oak Ridge National Laboratory on "Omics in the Arctic: Genome-enabled Contributions to Carbon Cycle Research in High-Latitude Ecosystems" on March 22, 2012 at the 7th Annual Genomics of Energy & Environment Meeting in Walnut Creek, California.

Wullschleger, Stan [ORNL

2012-03-22T23:59:59.000Z

142

Applications of Genome-based Science in Shaping the World's Citrus Industries (JGI Seventh Annual User Meeting, 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Fred Gmitter from the University of Florida on "Applications of Genome-based Science in Shaping the Future of the World's Citrus Industries" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, California.

Gmitter, Jr., Fred (University of Florida)

2012-03-21T23:59:59.000Z

143

Genomics, Gene Expression and Other Studies in Soybean Rust  

E-Print Network (OSTI)

by Christine Stone GENOME SEQUENCING PROJECT PhakopsoraUS DOE Joint Genome Institute DNA sequencing process LibraryUS DOE Joint Genome Institute DNA sequencing process Rolling

Posada-Buitrago, Martha Lucia

2005-01-01T23:59:59.000Z

144

DOE - Office of Legacy Management -- Dow Chemical Co - Walnut Creek - CA 02  

Office of Legacy Management (LM)

Dow Chemical Co - Walnut Creek - CA Dow Chemical Co - Walnut Creek - CA 02 FUSRAP Considered Sites Site: Dow Chemical Co. - Walnut Creek (CA.02 ) Eliminated from consideration under FUSRAP Designated Name: Not Designated Alternate Name: None Location: 2800 Mitchell Drive , Walnut Creek , California CA.02-1 Evaluation Year: 1987 CA.02-2 CA.02-3 Site Operations: From 1947 to 1957, conducted process studies and experimental investigations on different uranium and thorium-bearing ores; pilot-scale solvent extraction of uranium from phosphoric acid; liquid waste disposal studies CA.02-1 CA.02-4 CA.02-5 Site Disposition: Eliminated - Radiation levels below criteria CA.02-6 CA.02-7 Radioactive Materials Handled: Yes Primary Radioactive Materials Handled: Uranium, Thorium CA.02-1 CA.02-4

145

Understanding Historical Human Migration Patterns and Interbreeding (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Eske Willerslev from the University of Copenhagen on "Understanding Historical Human Migration Patterns and Interbreeding Using the Ancient Genomes of a Palaeo-Eskimo and an Aboriginal Australian" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, California.

Willerslev, Eske [University of Copenhagen

2012-03-21T23:59:59.000Z

146

ZipperDB: Predictions of Fibril-forming Segments within Proteins Identified by the 3D Profile Method (from the UCLA-DOE Institute for Genomics and Proteomics)  

DOE Data Explorer (OSTI)

ZipperDB contains predictions of fibril-forming segments within proteins identified by the 3D Profile Method. The UCLA-DOE Institute for Genomics and Proteomics has analyzed over 20,000 putative protein sequences for segments with high fibrillation propensity that could form a "steric zipper"ùtwo self-complementary beta sheets, giving rise to the spine of an amyloid fibril. The approach is unique in that structural information is used to evaluate the likelihood that a particular sequence can form fibrils. [copied with edits from http://www.doe-mbi.ucla.edu/]. In addition to searching the database, academic and non-profit users may also submit their protein sequences to the database.

Goldschmidt, L.; Teng, P.K.; Riek, R.; Eisenberg, D.

147

Transcriptomic and Metagenomic Exploration of Agave Drought and Stress Tolerance  

E-Print Network (OSTI)

Energy Joint Genome Institute, Walnut Creek, CA Genomics Division, Lawrence Berkeley National Lab, Berkeley, CA CINVESTAV, Irapuato, Guanajuato, MexicoEnergy Joint Genome Institute, Walnut Creek, CA 2 Genomics Division, Lawrence Berkeley National Lab, Berkeley, CA 3 CINVESTAV, Irapuato, Guanajuato, Mexico

Gross, Stephen

2013-01-01T23:59:59.000Z

148

Agave Transcriptomes and microbiomes for bioenergy research  

E-Print Network (OSTI)

Energy Joint Genome Institute, Walnut Creek, CA Genomics Division, Lawrence Berkeley National Lab, Berkeley, CA CINVESTAV, Irapuato, Guanajuato, MexicoEnergy Joint Genome Institute, Walnut Creek, CA 2 Genomics Division, Lawrence Berkeley National Lab, Berkeley, CA 3 CINVESTAV, Irapuato, Guanajuato, Mexico

Gross, Stephen

2013-01-01T23:59:59.000Z

149

Additional national laboratories  

NLE Websites -- All DOE Office Websites (Extended Search)

(Idaho Falls, ID) JGI Joint Genome Institute (Walnut Creek, CA) KCP - ALBQ Kansas City Plant (Albuquerque, NM) KCP Kansas City Plant (Kansas City, MO) LIGO Hanford...

150

JGI - Directions  

NLE Websites -- All DOE Office Websites (Extended Search)

Directions Address DOE Joint Genome Institute 2800 Mitchell Drive Walnut Creek, CA 94598 From Oakland Airport Follow Airport exit signs onto AIRPORT DR. Turn RIGHT onto HEGENBERGER...

151

NERSC Nick Balthaser NERSC Storage Systems Group  

NLE Websites -- All DOE Office Websites (Extended Search)

Introduction to HPSS at NERSC Nick Balthaser NERSC Storage Systems Group nabalthaser@lbl.gov Joint Genome Institute, Walnut Creek, CA Feb 10, 2011 * NERSC Archive Technologies...

152

Getting to the Root of Things: Spatiotemporal Regulatory Networks (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Siobhan Brady from University of California, Davis, gives a talk titled "tGetting to the Root of things: Spatiotemporal Regulatory Networks" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Brady, Siobhan [UC Davis

2012-03-22T23:59:59.000Z

153

Tapping the Molecular Potential of Microalgae to Produce Biomass (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Richard Sayre, from Los Alamos National Laboratory, presents a talk titled "Tapping the Molecular Potential of Microalgae to Produce Biomass" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Sayre, Richard [LANL

2012-03-22T23:59:59.000Z

154

JGI Fungal Genomics Program  

SciTech Connect

Genomes of energy and environment fungi are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 50 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such 'parts' suggested by comparative genomics and functional analysis in these areas are presented here

Grigoriev, Igor V.

2011-03-14T23:59:59.000Z

155

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes  

E-Print Network (OSTI)

for Broad Institute Genome Sequencing and Analysis Programsequenced by the Mouse Genome Sequencing Consortium [49] andto the Chimp Genome Sequencing Consortium 2.1/panTro2

2013-01-01T23:59:59.000Z

156

Environmental genomics reveals a single species ecosystem deep within the Earth  

E-Print Network (OSTI)

Environmental genomics reveals a single species ecosystemMaterial for Environmental genomics reveals a single speciesTechnology Program, DOE Joint Genomics Institute, Berkeley,

Chivian, Dylan

2008-01-01T23:59:59.000Z

157

Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

N. Louise Glass from the University of California, Berkeley, presents a talk titled "Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Glass, N Louise [UC Berkeley

2012-03-22T23:59:59.000Z

158

In Situ Expression of Acidic and Thermophilic Carbohydrate Active Enzymes by Filamentous Fungi (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Annika Mosier, graduate student from Stanford University presents a talk titled "In Situ Expression of Acidic and Thermophilic Carbohydrate Active Enzymes by Filamentous Fungi" at the JGI User 7th Annual Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, Calif

Mosier, Annika [Stanford University

2012-03-22T23:59:59.000Z

159

Genomic Advances to Improve Biomass for Biofuels (Genomics and Bioenergy)  

DOE Green Energy (OSTI)

Lawrence Berkeley National Lab bioscientist Daniel Rokhsar discusses genomic advances to improve biomass for biofuels. He presented his talk Feb. 11, 2008 in Berkeley, California as part of Berkeley Lab's community lecture series. Rokhsar works with the U.S. Department of Energy's Joint Genome Institute and Berkeley Lab's Genomics Division.

Rokhsar, Daniel

2008-02-11T23:59:59.000Z

160

Demand Management Institute (DMI) | Open Energy Information  

Open Energy Info (EERE)

Demand Management Institute (DMI) Demand Management Institute (DMI) Jump to: navigation, search Name Demand Management Institute (DMI) Address 35 Walnut Street Place Wellesley, Massachusetts Zip 02481 Sector Buildings Product Provides analysis for buildings on reducing energy use Website http://www.dmiinc.com/ Coordinates 42.3256508°, -71.2530294° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":42.3256508,"lon":-71.2530294,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


161

Case Study Walnut Hill United Methodist Church - Dallas, Texas, Chiller Replacement Analysis  

E-Print Network (OSTI)

In March of 1992 Walnut Hill United Methodist Church in Dallas, Tx. decided that their existing thermal storage and electric reciprocating chiller system were both in need of replacement. After analyzing several options, they chose to install 150 tons of gas-fired double-effect absorption chillers. This case study will show the original HVAC operation cost analysis and compare it to the present day operation costs and it will describe how unexpected changes occurred that caused the initial analysis to be questioned. Finally, this case study will show how today's operational costs are lower than originally projected. This presentation is not about the reasons the church chose this particular system, but about the analysis itself and its accuracy.

Phillips, J.

1998-01-01T23:59:59.000Z

162

CI Announces Globus Genomics | Argonne National Laboratory  

NLE Websites -- All DOE Office Websites (Extended Search)

CI Announces Globus Genomics April 9, 2013 Tweet EmailPrint The ArgonneUniversity of Chicago Computation Institute has announced a new sequencing analysis service called Globus...

163

Assessing Satellite-Based Rainfall Estimates in Semiarid Watersheds Using the USDA-ARS Walnut Gulch Gauge Network and TRMM PR  

Science Conference Proceedings (OSTI)

The rain gauge network associated with the Walnut Gulch Experimental Watershed (WGEW) in southeastern Arizona provides a unique opportunity for direct comparisons of in situ measurements and satellite-based instantaneous rain rate estimates like ...

Eyal Amitai; Carl L. Unkrich; David C. Goodrich; Emad Habib; Bryson Thill

2012-10-01T23:59:59.000Z

164

Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control  

E-Print Network (OSTI)

divergent eukaryote. BMC Genomics 2004, 5: 79. 118. Peixotoet al. : Comparative genomics of the pathogenic ciliateand Environmental Genomics, J Craig Venter Institute, 9704

2011-01-01T23:59:59.000Z

165

DOE JGI CSP 2012 PI Workshop  

NLE Websites -- All DOE Office Websites (Extended Search)

CSP 2012 PI Workshop DOE Joint Genome Institute Walnut Creek, California The DOE-JGI is organizing a two-day workshop for Principal Investigators on successful CSP 2012 proposals...

166

2009 JGI DOE User Meeting  

NLE Websites -- All DOE Office Websites (Extended Search)

Department of Energy Joint Genome Institute (JGI) Fourth Annual User Meeting Marriott Hotel in Walnut Creek, California March 25-27, 2009 The U.S. Department of Energy Joint...

167

DOE Joint Genome Institute: Genome Signatures Enable Tracking...  

NLE Websites -- All DOE Office Websites (Extended Search)

into how photosynthetic organisms can be engineered to do what we want, such as make biofuels or other products, rather than what they typically do, which is grow and make...

168

Los Alamos National Laboratory: Bioscience Division: Genome Science...  

NLE Websites -- All DOE Office Websites (Extended Search)

areas. B-6 Teams Applications Bioinformatics Computational Finishing Project Management Sequencing Technology Focus on Research Links Resources Joint Genome Institute (JGI)...

169

Low Dose Radiation Research Program: Genomic Instability and...  

NLE Websites -- All DOE Office Websites (Extended Search)

Genomic Instability and Low Dose Low Dose Rate Radiation. Authors: Lei Huang, Suzanne Grim, William F. Morgan Institutions: University of Maryland. Humans will always receive...

170

Molluscan Evolutionary Genomics  

E-Print Network (OSTI)

59179 Molluscan Evolutionary Genomics W. Brian Simison andBoore Molluscan Evolutionary Genomics W. Brian Simison andL. Boore Evolutionary Genomics Department, DOE Joint Genome

Simison, W. Brian

2010-01-01T23:59:59.000Z

171

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

JGI Mission Areas Bioenergy Carbon Cycling BiogeochemistryJGI User Community DOE Bioenergy Research Center Sequencinginteractions with the DOE Bioenergy Research Centers, and

Gilbert, David

2009-01-01T23:59:59.000Z

172

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

digestion, could produce biogas—primarily methane and carbongasoline per day. When biogas is cleaned of its particulates

Gilbert, David

2009-01-01T23:59:59.000Z

173

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

soon be, targets of keen interest in the biofuels researchtarget. Current biofuel production meth- ods, such as corn-to-ethanol, are a valuable BIOFUELS

Gilbert, David

2009-01-01T23:59:59.000Z

174

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

into operating as a user facility, the DOE JGI modeleditself after other DOE user facilities, such as synchro-s approach to being a user facility is based on the concept

Gilbert, David

2009-01-01T23:59:59.000Z

175

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

ries Oak Ri a ato nt o DO me e DOE l labor amos, onAlph ar tio teg ac ana hem dP or B DOE m ogeoc ides in tional achesmanufacturer, or otherwise, does not necessarily constitute

Gilbert, David

2009-01-01T23:59:59.000Z

176

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

are potential raw materials for production of biofuels. TheRaw plant material, or dedicated bioenergy crops, can provide the starting point for mak- ing biofuels.

Gilbert, David

2009-01-01T23:59:59.000Z

177

Functional Genomics | VIMSS - Virtual Institute for Microbial...  

NLE Websites -- All DOE Office Websites (Extended Search)

Cloning of Identified Pathways Cloning of Identified Pathways Diversa Corporation will apply a combination of advanced technologies, including large DNA insert cloning, biopanning,...

178

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

B: Glossary Appendix C: CSP Sequencing Plans for 2009Community Sequencing Program (CSP). He is also responsibleand im- plemented the CSP which provides large- scale DNA

Gilbert, David

2009-01-01T23:59:59.000Z

179

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Thermoacidophilic proteins for biofuel production. Trends inthat could help improve biofuel production. Diatom Genomedoc/200809/termites) Biofuel’s Holy Grail: Shipworms? (

Gilbert, David

2009-01-01T23:59:59.000Z

180

Engineering Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Engineering Institute Engineering Institute Engineering Institute Engineering dynamics that include flight, vibration isolation for precision manufacturing, earthquake engineering, blast loading, signal processing, and experimental model analysis. Contact Leader, LANL Charles Farrar Email Leader, UCSD Michael Todd Email LANL Program Administrator Jutta Kayser (505) 663-5649 Email Collaboration for conducting mission-driven, multidisciplinary engineering research and recruiting, revitalization, and retention of current & future staff The Engineering Institute is a collaboration between LANL and the University of California at San Diego (UCSD) Jacobs School of Engineering, whose mission is to develop a comprehensive approach for conducting mission-driven, multidisciplinary engineering research

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


181

Molluscan Evolutionary Genomics  

E-Print Network (OSTI)

Today’s high-throughput genome sequencing centers lack thecomplete nuclear genome sequencing, with several mollusksparticipation. The cost of genome sequencing is still very

Simison, W. Brian

2010-01-01T23:59:59.000Z

182

JGI Fungal Genomics Program  

E-Print Network (OSTI)

View Supports functional genomics, user data deposition andJGI Fungal Genomics Program Igor V. Grigoriev 1 DOE Jointof California. JGI Fungal Genomics Program Contact: Igor

Grigoriev, Igor V.

2011-01-01T23:59:59.000Z

183

JGI Fungal Genomics Program  

E-Print Network (OSTI)

JGI Fungal Genomics Program Igor V. Grigoriev 1 Lawrenceof California. JGI Fungal Genomics Program Contact: IgorJGI). Its key project, the Genomics Encyclopedia of Fungi,

Grigoriev, Igor V.

2012-01-01T23:59:59.000Z

184

Institutional Controls  

NLE Websites -- All DOE Office Websites (Extended Search)

Institutional Controls Institutional Controls Many major Federal laws (e.g., Atomic Energy Act (AEA), Resource Conservation Recovery Act (RCRA), Comprehensive Environmental Response, Compensation and Liability Act (CERCLA)), Executive Orders, regulations and various other drivers influence the use of institutional controls at DOE sites. Some drivers directly authorize or require the use of institutional controls, while others do not. DOE also uses institutional controls when no specific statutory requirement exists to supplement active remediation, pollution control, public and resource protection, and physical security, or to bolster the integrity of engineered remedies. DOE and its predecessor agencies have conducted activities for over 50 years, using land ownership and access control, environmental monitoring and surveillance, and other tools to support protection efforts at operational and inactive facilities, including radioactive waste burial grounds.

185

Genome Analyses and Supplement Data from the International Populus Genome Consortium (IPGC)  

DOE Data Explorer (OSTI)

The sequencing of the first tree genome, that of Populus, was a project initiated by the Office of Biological and Environmental Research in DOE’s Office of Science. The International Populus Genome Consortium (IPGC) was formed to help develop and guide post-sequence activities. The IPGC website, hosted at the Oak Ridge National Laboratory, provides draft sequence data as it is made available from DOE Joint Genome Institute, genome analyses for Populus, lists of related publications and resources, and the science plan. The data are available at http://www.ornl.gov/sci/ipgc/ssr_resource.htm.

International Populus Genome Consortium (IPGC)

186

Using Partial Genomic Fosmid Libraries for Sequencing Complete Organellar Genomes  

E-Print Network (OSTI)

than total nuclear genome sequencing, making broaderavailable organellar genome sequencing methods, especiallyenables plastid genome sequencing from both parasitic and

McNeal, Joel R.; Leebens-Mack, James H.; Arumuganathan, K.; Kuehl, Jennifer V.; Boore, Jeffrey L.; dePamphilis, Claude W.

2005-01-01T23:59:59.000Z

187

Quantum Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Quantum Institute Quantum Institute Quantum Institute A new research frontier awaits! Our door is open and we thrive on mutually beneficial partnerships, collaborations that drive innovations and new technologies. Contact Leader Malcolm Boshier (505) 665-8892 Email Two of LANL's most successful quantum technology initiatives: quantum cryptography and the race for quantum computer The area of quantum information, science, and technology is rapidly evolving, with important applications in the areas of quantum cryptography, quantum computing, quantum metrology, and advanced quantum-based sensors, some of which are directly relevant to the Laboratory's national security mission. Mission Foster a vigorous intellectual environment at LANL Define and develop strategic thrusts Target and pursue funding opportunities

188

New Technique Improves Microbial Genome Assembly | U.S. DOE Office...  

Office of Science (SC) Website

FeedbackShare Page Click to enlarge photo. Enlarge Photo Image courtesy of DOE Joint Genome Institute (JGI), Roy Kaltschmidt DOE JGI researchers have helped develop a...

189

JGI Genomics and Bioinformatics for Undergraduate Educators Workshop |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

JGI Genomics and Bioinformatics for Undergraduate Educators JGI Genomics and Bioinformatics for Undergraduate Educators Workshop JGI Genomics and Bioinformatics for Undergraduate Educators Workshop March 23, 2013 3:00PM EDT to March 26, 2013 6:00PM EDT University of California The JGI will be holding the JGI Genomics and Bioinformatics for Undergraduate Educators Workshop in conjunction with the JGI User Meeting. The workshop will take place March 23-26, 2013 at the JGI. The DOE Joint Genome Institute's Education Program is providing opportunities for colleges and universities across the country to "interpret" bacterial genomes, such as those sequenced as part of the GEBA project, for analysis. This "Interpret a GEBA Genome" Education Program makes available a selection of recently sequenced genomes

190

Operations capability improvement of a molecular biology laboratory in a high throughput genome sequencing center  

E-Print Network (OSTI)

The Broad Institute is a research collaboration of MIT, Harvard University and affiliated hospitals, and the Whitehead Institute for Biomedical Research. Its scientific mission is to "(1) create tools for genomic medicine ...

Vokoun, Matthew R. (Matthew Richard)

2005-01-01T23:59:59.000Z

191

Operational streamlining in a high-throughput genome sequencing center  

E-Print Network (OSTI)

Advances in medicine rely on accurate data that is rapidly provided. It is therefore critical for the Genome Sequencing platform of the Broad Institute of MIT and Harvard to continually strive to reduce cost, improve ...

Person, Kerry P. (Kerry Patrick)

2006-01-01T23:59:59.000Z

192

Genomics and Systems Biology  

NLE Websites -- All DOE Office Websites (Extended Search)

Genomics and Systems Biology LANL leads the world in computational finishing of microbial genomes Read caption + In 2013, Los Alamos scientist Richard Sayre and his team...

193

Microsoft Word - draft2008JGIabstracts.doc  

NLE Websites -- All DOE Office Websites (Extended Search)

Third Annual Third Annual DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 26-28, 2008 Marriott Hotel Walnut Creek, California iii Contents Agenda ............................................................................iv Speaker Presentations.................................................... 1 Poster Presentations ..................................................... 11 Attendees ....................................................................... 53 Author Index................................................................. 59 iv Agenda All functions to be held at the Walnut Creek Marriott unless otherwise noted WEDNESDAY, March 26 Start Time End Time Subject Session Chair/Speaker 8:30 AM Registration Opens

194

Microsoft PowerPoint - Microbial Genome and Metagenome Analysis Case Study (NERSC Workshop - May 7-8, 2009).ppt [Compatibility  

NLE Websites -- All DOE Office Websites (Extended Search)

Genome & Genome & Metagenome Analysis: Computational Challenges Natalia N. Ivanova * Nikos C. Kyrpides * Victor M. Markowitz ** * Genome Biology Program, Joint Genome Institute ** Lawrence Berkeley National Lab Microbial genome & metagenome analysis General aims Understand microbial life Apply to agriculture, bioremediation, biofuels, human health Specific aims include Specific aims include Predict biochemistry & physiology of organisms based on genome sequence Explain known biochemical & physiological properties Metabolic reconstruction * Ivanova & Lykidis (2009) Metabolic reconstruction. Encyclopedia of Microbiology, Elsevier: 607-621. 2 Genome sequence data size Now ~1,400 microbial genomes = 5.5 mil genes ~ 100 metagenomes samples

195

Genomic Advances to Improve Biomass for Biofuels (LBNL Science at the Theater)  

DOE Green Energy (OSTI)

Lawrence Berkeley National Lab bioscientist Daniel Rokhsar discusses genomic advances to improve biomass for biofuels. He presented his talk Feb. 11, 2008 in Berkeley, California as part of Berkeley Lab's community lecture series. Rokhsar works with the U.S. Department of Energy's Joint Genome Institute and Berkeley Lab's Genomics Division.

Rokhsar, Daniel

2008-02-11T23:59:59.000Z

196

Rhodopseudomonas palustris genome project. Final report  

DOE Green Energy (OSTI)

Rhodopseudomonas palustris is a common soil and water bacterium that makes its living by converting sunlight to cellular energy and by absorbing atmospheric carbon dioxide and converting it to biomass. This microbe can also degrade and recycle components of the woody tissues of plants, wood being the most abundant polymer on earth. Because of its intimate involvement in carbon management and recycling, R. palustris was selected by the DOE Carbon Management Program to have its genome sequenced by the Joint Genome Institute (JGI). This award provided funds for the preparation of R. palustris genomic DNA which was then supplied to the JGI in sufficient amounts to enable the complete sequencing of the R. palustris genome. The PI also supplied the JGI with technical information about the molecular biology of R. palustris.

Harwood, Caroline S.

2000-11-22T23:59:59.000Z

197

Complete genome sequence of Methanoculleus marisnigri type strain JR1  

SciTech Connect

Methanoculleus marisnigri Romesser et al. 1981 is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain, JR1, was isolated from anoxic sediments of the Black Sea. M. marisnigri is of phylogenetic interest because at the time the sequencing project began only one genome had previously been sequenced from the order Methanomicrobiales. We report here the complete genome sequence of M. marisnigri type strain JR1 and its annotation. This is part of a Joint Genome Institute 2006 Community Sequencing Program to sequence genomes of diverse Archaea.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Sieprawska-Lupa, Magdalena [University of Georgia, Athens, GA; Goltsman, Eugene [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Barry, Kerrie [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Brettin, Tom [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Hauser, Loren John [ORNL; Land, Miriam L [ORNL; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Whitman, W. B. [University of Georgia, Athens, GA; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute

2009-01-01T23:59:59.000Z

198

Complete genome sequence of Methanocorpusculum labreanum type strain Z  

Science Conference Proceedings (OSTI)

Methanocorpusculum labreanum is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain Z was isolated from surface sediments of Tar Pit Lake in the La Brea Tar Pits in Los Angeles, California. M. labreanum is of phylogenetic interest because at the time the sequencing project began only one genome had previously been sequenced from the order Methanomicrobiales. We report here the complete genome sequence of M. labreanum type strain Z and its annotation. This is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Sieprawska-Lupa, Magdalena [University of Georgia, Athens, GA; Goltsman, Eugene [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Barry, Kerrie [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Hauser, Loren John [ORNL; Land, Miriam L [ORNL; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Whitman, W. B. [University of Georgia, Athens, GA; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute

2009-01-01T23:59:59.000Z

199

CGAL: computing genome assembly likelihoods  

E-Print Network (OSTI)

SM, Lei M, Li J, et al: Genome sequencing in microfabricatedDe novo bacterial genome sequencing: millions of very shortGenome assembly, evaluation, likelihood, sequencing.

Rahman, Atif; Pachter, Lior

2013-01-01T23:59:59.000Z

200

Genomics and the human genome project: implications for psychiatry  

E-Print Network (OSTI)

and psychosis: a convergent functional genomics approach.Physiology & Genomics, 4, 83–91. O LIPHANT , A. , B ARKER ,2004), 16(4), 294–300 Genomics and the Human Genome Project:

Kelsoe, J R

2004-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
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We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


201

Comparative genomic workflow  

E-Print Network (OSTI)

his article describes a workflow for identifying conserved patterns in noncoding regions of vertebrate genomes, with an intention of investigating possible functions of the conserved regions. The annotations of genomes are ...

Rajapakse, Jagath

202

Genome in a Bottle Consortium  

Science Conference Proceedings (OSTI)

Genome in a Bottle Consortium. Summary: NIST has organized the "Genome in a Bottle Consortium" to develop the reference ...

2013-03-15T23:59:59.000Z

203

Institutional 2-cells and Grothendieck institutions  

E-Print Network (OSTI)

. of Computer Science, University of Bremen, Germany Abstract. We propose to use Grothendieck institutions based specification, you want to prove a theorem, and hence want to see a list of its possible translations (along (co)comorphisms) into tool-supported institutions. Now even with a small diagram of institutions, the list can become quite

Mossakowski, Till - Deutschen Forschungszentrum für Künstliche Intelligenz & Fachbereich 3

204

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Argonne Accelerator Institute: Mission The mission of the Argonne Accelerator Institute is centered upon the following related goals: Locate next generation accelerator facilities...

205

An integrative approach for genomic island prediction in Prokaryotic genomes  

Science Conference Proceedings (OSTI)

A genomic island (GI) is a segment of genomic sequence that is horizontally transferred from other genomes. The detection of genomic islands is extremely important to the medical research. Most of current computational approaches that use sequence composition ... Keywords: gene information, genomic islands, intergenic distance, sequence composition

Han Wang; John Fazekas; Matthew Booth; Qi Liu; Dongsheng Che

2011-05-01T23:59:59.000Z

206

BMC Genomics BioMed Central  

E-Print Network (OSTI)

Software Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome

Vasily Tcherepanov; Angelika Ehlers; Chris Upton

2006-01-01T23:59:59.000Z

207

Genomics and Systems Biology  

NLE Websites -- All DOE Office Websites (Extended Search)

Genomics and Systems Biology Genomics and Systems Biology Genomics and Systems Biology Los Alamos scientists perform research in functional genomics and structural genomics, and applications for such work cover diverse fields such as energy, agriculture, and environmental cleanup. Get Expertise Babetta Marrone Biofuels Program Manager Email Cheryl Kuske DOE BER Biological System Science Division Program Manager Email Chris Detter Emerging Threats Program Manager: Email Rebecca McDonald Bioscience Communications Email "We were asked to build a rocket ship," said developer Joel Berendzen, "but instead we built a 10,000 mph motorcycle." - Sequedex team LANL leads the world in computational finishing of microbial genomes Protein research Read caption + In 2013, Los Alamos scientist Richard Sayre and his team genetically

208

Genome Sequence Databases (Overview): Sequencing and Assembly  

E-Print Network (OSTI)

complete microbial genome sequencing (you get what you payet al. (2005). Genome sequencing in open microfabricatedof problem solving in genome sequencing. Genome Research 8,

Lapidus, Alla L.

2009-01-01T23:59:59.000Z

209

Genome Analysis and Systems Modeling Group  

NLE Websites -- All DOE Office Websites (Extended Search)

(Microbial Genomes) Pipeline, Comprehensive Genome Analysis Pipeline Genome Channel, Java applet for the comprehensive sequence-based view of genomes. Grail, a tool for the...

210

JGI - Undergraduate Research in Functional Genomics  

NLE Websites -- All DOE Office Websites (Extended Search)

Education Microbial Genome Analysis Microbial Functional Genomics Undergraduate Research in Microbial Functional Genomics Genomics not only can answer questions about known genes,...

211

Genome Science/Technologies  

NLE Websites -- All DOE Office Websites (Extended Search)

Science & Innovation » Science & Innovation » Science & Engineering Capabilities » Bioscience: Bioenergy, Biosecurity, and Health » Environmental Microbiology » Genome Genome Science/Technologies Los Alamos using cutting-edge sequencing, finishing, and analysis, impact valuable genomic data. Get Expertise Cheryl Kuske DOE BER Biological System Science Division Program Manager Email Srinivas Iyer Bioscience Group Leader Email Momchilo Vuyisich Bioenergy and Biomedical Sciences Email Rebecca McDonald Bioscience Communications Email State-of-the art technology and extensive genomics expertise Protein research Read caption + Los Alamos National Laboratory graduate student, Patricia Langan, changes the properties of a green fluorescent protein in order to create new fluorescent protein variants.

212

Genome Science/Technologies  

NLE Websites -- All DOE Office Websites (Extended Search)

Momchilo Vuyisich Bioenergy and Biomedical Sciences Email Rebecca McDonald Bioscience Communications Email State-of-the art technology and extensive genomics expertise Protein...

213

JGI - Genomic Technologies  

NLE Websites -- All DOE Office Websites (Extended Search)

opportunities for technological access to our user services (including single cell genomics and DNA synthesis). Our Department serves at the interface between the Project...

214

Petroleum Institute Scholarly Publications  

E-Print Network (OSTI)

Abu Dhabi The Petroleum Institute Scholarly Publications January 1st ­ December 31st 2007 #12;The Petroleum Institute Scholarly Publications January 1st ­ December 31st 2007 v #12;- 2 - Scholarly Publications 2007 | The Petroleum Institute #12;- 3 - Scholarly Publications 2007 | The Petroleum Institute

215

DOE Joint Genome Institute: Tracking the Remnants of the Carbon...  

NLE Websites -- All DOE Office Websites (Extended Search)

Tracking the Remnants of the Carbon Cycle: How an Ancestral Fungus May Have Influenced Coal Formation For want of a nail, the nursery rhyme goes, a kingdom was lost. A similar,...

216

DOE Joint Genome Institute: DNA Sequencing Reveals Complex Microbial...  

NLE Websites -- All DOE Office Websites (Extended Search)

operates at higher than normal temperatures to help degrade terephthalate (TA) wastewater that results from the production of a raw chemical used to make many plastic...

217

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for...

218

DOE Joint Genome Institute: Formidable Fungal Force Counters...  

NLE Websites -- All DOE Office Websites (Extended Search)

applications, fungi provide a source of enzymes to catalyze such processes as generating biofuels from plant biomass. One large fungal group with such enzymes are the rust plant...

219

The DOE Joint Genome Institute Expands Capabilities via New Partnershi...  

NLE Websites -- All DOE Office Websites (Extended Search)

Expands Capabilities via New Partnerships With the publication last year of its strategic plan, "Forging the Future - A Ten-Year Strategic Vision" the U.S. Department of...

220

DOE Joint Genome Institute: Tiny Algae Shed Light on Photosynthesis...  

NLE Websites -- All DOE Office Websites (Extended Search)

children learn is the recipe for photosynthesis, combining carbon dioxide, water and solar energy to produce organic compounds. Many of the world's most important...

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


221

U.S. Department of Energy Joint Genome Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

areas indicate regions with more chlorophyll, while the blue regions designate xylem tissues involved in transporting water and nutrients. (Image by BESC researcher Shi-You...

222

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

as a non-traditional user facility, the JGI is empoweringserve as a traditional user facility driven by DOE missionexperience running user facilities, it has become clear that

Gilbert, David

2005-01-01T23:59:59.000Z

223

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

APPENDIX B: 2005 & 2006 CSP DNA Sequencing Projects cont.+ Appendix B: 2005 and 2006 CSP DNA Sequencing Projects + +Community Sequencing Program (CSP) Traditionally, beyond its

Gilbert, David

2005-01-01T23:59:59.000Z

224

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

processes, and alternative energy production. Faster andin the areas of alternative energy production, car- bonsequestration, and alternative energy production. invaluable

Gilbert, David

2005-01-01T23:59:59.000Z

225

Genomic Science | U.S. DOE Office of Science (SC)  

NLE Websites -- All DOE Office Websites (Extended Search)

Biological Biological Systems Science Division (BSSD) » Genomic Science Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building

226

Complete genome sequence of Ferroglobus placidus AEDII12DO  

Science Conference Proceedings (OSTI)

Ferroglobus placidus belongs to the order Archaeoglobales within the archaeal phylum Euryar- chaeota. Strain AEDII12DO is the type strain of the species and was isolated from a shallow marine hydrothermal system at Vulcano, Italy. It is a hyperthermophilic, anaerobic chemoli- thoautotroph, but it can also use a variety of aromatic compounds as electron donors. Here we describe the features of this organism together with the complete genome sequence and anno- tation. The 2,196,266 bp genome with its 2,567 protein-coding and 55 RNA genes was se- quenced as part of a DOE Joint Genome Institute Laboratory Sequencing Program (LSP) project.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Risso, Carla [University of Massachusetts, Amherst; Holmes, Dawn [University of Massachusetts, Amherst; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Thomas S [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Lovley, Derek [University of Massachusetts, Amherst; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

227

Complete genome sequence of Staphylothermus hellenicus P8T  

SciTech Connect

Staphylothermus hellenicus belongs to the order Desulfurococcales within the archaeal phy- lum Crenarchaeota. Strain P8T is the type strain of the species and was isolated from a shal- low hydrothermal vent system at Palaeochori Bay, Milos, Greece. It is a hyperthermophilic, anaerobic heterotroph. Here we describe the features of this organism together with the com- plete genome sequence and annotation. The 1,580,347 bp genome with its 1,668 protein- coding and 48 RNA genes was sequenced as part of a DOE Joint Genome Institute (JGI) La- boratory Sequencing Program (LSP) project.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Wirth, Reinhard [Universitat Regensburg, Regensburg, Germany; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Davenport, Karen W. [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

228

Instituting an institute: go for it!  

Science Conference Proceedings (OSTI)

The University of New Hampshire set out to inaugurate a Faculty Instructional Technology Summer Institute (FITSI) addressing the pedagogical principles that support the successful integration of instructional technology into teaching and learning. After ... Keywords: design, educational technology, faculty development, institute, instructional technology, training

Michael Giordano; Laurel Warren Trufant

2002-11-01T23:59:59.000Z

229

Genomic analysis of mouse tumorigenesis  

E-Print Network (OSTI)

The availability of the human and mouse genome sequences has spurred a growing interest in analyzing mouse models of human cancer using genomic techniques. Comparative genomic studies on mouse and human tumors can be ...

Tam, Mandy Chi-Mun

2006-01-01T23:59:59.000Z

230

Spectrogram analysis of genomes  

Science Conference Proceedings (OSTI)

We perform frequency-domain analysis in the genomes of various organisms using tricolor spectrograms, identifying several types of distinct visual patterns characterizing specific DNA regions. We relate patterns and their frequency characteristics to ... Keywords: DNA spectrograms, frequency-domain analysis, genome analysis

David Sussillo; Anshul Kundaje; Dimitris Anastassiou

2004-01-01T23:59:59.000Z

231

Legume Crop Genomics  

Science Conference Proceedings (OSTI)

This book will present this technical theme in a manner that should help many readers answer the question, "What is genomics?" And finally, this book should help readers formulate an opinion on the question, "Why is genomic research needed?" Legume Crop Ge

232

Genome Properties Database  

DOE Data Explorer (OSTI)

The Genome Properties system consists of a suite of "Properties" which are carefully defined attributes of prokaryotic organisms whose status can be described by numerical values or controlled vocabulary terms for individual completely sequenced genomes. Evaluation of these properties may take place via manual curation or by computer algorithms (numerical calculations or rules-based assignment of controlled vocabulary terms). The Genome Properties system has been designed to capture the widest possible range of attributes and currently encompasses taxonomic terms, genometric calculations, metabolic pathways, systems of interacting macromolecular components and quantitative and descriptive experimental observations (phenotypes) from the literature. Wherever possible, Genome Properties are linked to traceable lines of evidence and links are provided to data for any genes which are part of this evidence. The primary source of evidence linking genes to properties is homology modelling using Hidden Markov Models (HMMs) from the TIGRFAMs and Pfam databases. (Taken from the Genome Properties Home Page)(Specialized Interface)

Haft, Daniel H.; Selengut, Jeremy D.; Brinkac, Lauren M.; Zafar, Nikhat; White, Owen

233

Tackling the Triple-Threat Genome of Miscanthus x giganteus (2010 JGI User Meeting)  

Science Conference Proceedings (OSTI)

Steve Moose from the University of Illinois at Urbana-Champaign and the Energy Biosciences Institute on "Tackling the Triple-Threat Genome of Miscanthus x giganteus" on March 25, 2010 at the 5th Annual DOE JGI User Meeting

Moose, Steve

2010-03-25T23:59:59.000Z

234

Genome Bioinformatics Data from the University of California at Santa Cruz  

DOE Data Explorer (OSTI)

In addition to the sponsors listed in this citation, many additional institutions and individuals provided support and contributed data to this collection. A full listing is available on the website at http://genome.ucsc.edu/goldenPath/credits.html.

Consortium, ENCODE [Encyclopedia of DNA Elements

235

Analyzing genomic data: understanding the genome  

Science Conference Proceedings (OSTI)

The effort that led to the sequencing of the human genome ushered life sciences into a new era. One of the largest international scientific endeavors of the time delivered the genetic makeup of our species to the research community. Further international ... Keywords: Algorithmic Development, Biological Data Mining, Data Mining Software Tools

Xosé M. Fernández-Suárez

2012-03-01T23:59:59.000Z

236

Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic Bacterium Marinitoga piezophila KA3  

Science Conference Proceedings (OSTI)

Marinitoga piezophila KA3 is a thermophilic, anaerobic, chemoorganotrophic, sulfur-reducing bacterium isolated from the Grandbonum deep-sea hydrothermal vent site at the East Pacific Rise (13 degrees N, 2,630-m depth). The genome of M. piezophila KA3 comprises a 2,231,407-bp circular chromosome and a 13,386-bp circular plasmid. This genome was sequenced within Department of Energy Joint Genome Institute CSP 2010.

Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Han, James [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Teshima, Hazuki [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Vannier, Pauline [Ifremer, Plouzane, France; Oger, Phil [University of Lyon, France; Bartlett, Douglas [University of California, San Diego & La Jolla; Noll, Kenneth M [University of Connecticut, Storrs; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Jebbar, Mohamed [Ifremer, Plouzane, France

2012-01-01T23:59:59.000Z

237

Towards the Perfect Genome Sequence (Opening Keynote) ( 7th Annual SFAF Meeting, 2012)  

Science Conference Proceedings (OSTI)

George Weinstock, associate director at the Genome Institute at Washington University, delivered the opening keynote "Towards the Perfect Genome Sequence" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Weinstock, George [Washington University

2012-06-01T23:59:59.000Z

238

Institute /or ADVANCED STUDY  

E-Print Network (OSTI)

, and Stochasticity , David W. McLaughlin, Courant Institute; Waves in Random Media, George Papanicolaou, Stanford Their Properties from Nodes or Nodal Lines, Joyce McLaughlin, Rensselaer Polytechnic Institute; the graduate

239

Structural Genomics | Biosciences Division  

NLE Websites -- All DOE Office Websites (Extended Search)

Chart Site Index Inside BIO BIO Safety About Argonne Midwest Center for Structural Genomics Andrzej Joachimiak Director Bldg: 202. Room: Q 118 E-mail: andrzejj@anl.gov Phone:...

240

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies  

E-Print Network (OSTI)

annotation and comparative genomics. Database (Oxford) 2009,et al. : Comparative genomics of the core and accessoryComparative genomics of the core and accessory genomes of 48

2013-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


241

17784_Tour_Brochure_CR:Layout 1  

NLE Websites -- All DOE Office Websites (Extended Search)

genome of an organism contains all of genome of an organism contains all of its genetic material or DNA, molecules made up of four bases known as A, C, T and G. When scientists sequence the genome, it's like taking apart a puzzle someone else completed to figure out what each section is made up of, and then re-assemble the information so that scientists can understand the big picture. The U.S. Department of Energy Joint Genome Institute has been headquartered in Walnut Creek, California since 1999, sequencing plants, microbes and communities of microbes called metagenomes that are related to the DOE mission areas of bioenergy, the carbon cycle and biogeochemistry. A fifth of the sequencing projects done worldwide is done right here in Walnut Creek. JOINT GENOME INSTITUTE sequencing the world of possibilities

242

Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b  

Science Conference Proceedings (OSTI)

Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physicochemical gradient. This genome was sequenced to be a comparative resource for the study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy s (DOE s) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

Vishnivetskaya, T. [University of Tennessee, Knoxville (UTK); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L [ORNL; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Tom [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Kathariou, Sophia [North Carolina State University; Ramaley, Robert F. [University of Nebraska Medical Center; Rodrigues, Debora F. [University of Houston, Houston; Hendrix, Christie [Yellowstone National Park; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; Tiedje, James M. [Michigan State University, East Lansing

2011-01-01T23:59:59.000Z

243

Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b  

Science Conference Proceedings (OSTI)

Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physico-chemical gradient. This genome was sequenced to be a comparative resource for study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy's (DOE) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

Vishnivetskaya, T. [University of Tennessee, Knoxville (UTK); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Thomas S [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Kathariou, Sophia [North Carolina State University; Ramaley, Robert F. [University of Nebraska Medical Center; Rodrigues, Debora F. [University of Houston, Houston; Hendrix, Christie [Yellowstone National Park; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; Tiedje, James M. [Michigan State University, East Lansing

2011-01-01T23:59:59.000Z

244

Complete genome sequence of Halopiger xanaduensis type strain (SH6T)  

SciTech Connect

Halopiger xanaduensis is the type species of the genus Halopiger and belongs to the euryarchaeal family Halobacteriaceae. H. xanaduensis strain SH-6, which is designated as the type strain, was isolated from the sediment of a salt lake in Inner Mongolia, Lake Shangmatala. Like other members of the family Halobacteriaceae, it is an extreme halophile requiring at least 2.5 M salt for growth. We report here the sequencing and annotation of the 4,355,268 bp genome, which includes one chromosome and three plasmids. This genome is part of a Joint Genome Institute (JGI) Community Sequencing Program (CSP) project to sequence diverse haloarchaeal genomes.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Tindall, Brian [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Han, James [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Teshima, Hazuki [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

245

Institute for Advanced Studies  

NLE Websites -- All DOE Office Websites (Extended Search)

Institute for Advanced Studies Institute for Advanced Studies Institute for Advanced Studies NMC leverages the strengths of three research universities to build joint programs, develop strategic partnerships, provide common organization and facilities. Contact Leader TBD LANL Program Administrator Pam Hundley (505) 663-5453 Email Building regional partnerships in education, leveraging strengths of three research universities The Institute for Advanced Studies (IAS) works with the three New Mexico research universities (University of New Mexico, New Mexico Tech, and New Mexico State University) to develop research and educational collaborations and partnerships. To facilitate interactions between the universities and LANL, the three New Mexico schools established the New Mexico Consortium (NMC), a nonprofit

246

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

ICFA Beam Dynamics Mini-Workshop on DeflectingCrabbing Cavity Applications in Accelerators April 21-23, 2010, Cockcroft Institute, Daresbury Laboratory, Warrington, UK Sixth...

247

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Fermilab Collaboration Lee Teng Scholarship Program Useful Links Argonne Accelerator Institute: For Industrial Collaborators -- Working with Argonne This link is addressed to...

248

INSTITUTE OF COMPUTER SCIENCE  

E-Print Network (OSTI)

Institute of Computer Science, Academy of Sciences of the Czech Republic. Pod vod?renskou v 2, 182 07 Prague 8, Czech Republic. phone: (+420)266052083 ...

249

Evolutionary Genomics of Life in (and from) the Sea  

E-Print Network (OSTI)

web Genomes Online NIH Genome Sequencing Input NIH GenomesAbstract High throughput genome sequencing centers that werefunding sources of genome sequencing in the United States,

Boore, Jeffrey L.

2009-01-01T23:59:59.000Z

250

Essays on Institutions and Innovation  

E-Print Network (OSTI)

Organizational Structure of the National Institutes of HealthOrganizational Structure of the National Institutes of Health,

Hegde, Deepak

2010-01-01T23:59:59.000Z

251

Fueling the Future with Fungal Genomics  

E-Print Network (OSTI)

et al. 2008. Fungal genome sequencing and bioenergy. FungalCullen D, et al. 2008. Genome sequencing and analysis of theand lessons learned from genome sequencing. Methods Enzymol.

Grigoriev, Igor V.

2011-01-01T23:59:59.000Z

252

Requirements and standards for organelle genome databases  

E-Print Network (OSTI)

to the complete genome sequencing of many other organisms (guide the transition from human genome sequencing to being a04334; and Phakopsora genome sequencing direct funding).

Boore, Jeffrey L.

2006-01-01T23:59:59.000Z

253

VISTA - computational tools for comparative genomics  

E-Print Network (OSTI)

tools for comparative genomics Kelly A. Frazer 1 , LiorBerkeley, CA, 94720 Genomics Division, Lawrence Berkeleymultiple comparative genomics tools and provides users with

Frazer, Kelly A.; Pachter, Lior; Poliakov, Alexander; Rubin, Edward M.; Dubchak, Inna

2004-01-01T23:59:59.000Z

254

Fueling the Future with Fungal Genomics  

E-Print Network (OSTI)

JW. 2010. China's fungal genomics initiative: a whitepaper.and Saccharomycotina. BMC Genomics. 8, 325. Bailly J,Harnessing ectomycorrhizal genomics for ecological insights.

Grigoriev, Igor V.

2011-01-01T23:59:59.000Z

255

Classification Training Institute Catalog | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Classification Training Institute Catalog Classification Training Institute Catalog Enforcement Guidance Oversight Reporting Classification Classification Training Institute...

256

JGI - Structural Genomics Program  

NLE Websites -- All DOE Office Websites (Extended Search)

Structural Genomics Program Structural Genomics Program The structural characterization of proteins of unknown function can be described as structural genomics, an approach in which structure determination by X-ray crystallography supplies key functional information. This is exemplified by studies of the carboxysome. The structures of the first carboxysome shell proteins (Kerfeld et al., Science 2005) confirmed earlier hypotheses that they are indeed the basic building blocks of the carboxysome shell; the quaternary structure and the higher order assemblies of the proteins in the crystals provided insight into how they assemble into shell facets. Likewise, our structure of the carboxysome component CsoS3 revealed that it was a member of the beta-carbonic family, despite having no detectable sequence homology at the level of primary structure

257

INSTITUTES OF Registration  

E-Print Network (OSTI)

to the scheduled course. Sign up for: Date Laboratory Safety at the National Institutes of Health HIV Health and Safety Office of Research Services National Institutes of Health Tel: 301-496-3353 http of Occupational Health and Safety to provide annual refresher training for research laboratory personnel who may

Bandettini, Peter A.

258

Mammalian comparative genomics and epigenomics  

E-Print Network (OSTI)

The human genome sequence can be thought of as an instruction manual for our species, written and rewritten over more than a billion of years of evolution. Taking a complete inventory of our genome, dissecting its genes ...

Mikkelsen, Tarjei Sigurd, 1978-

2009-01-01T23:59:59.000Z

259

Life Sciences & Genomics Division Diversity  

NLE Websites -- All DOE Office Websites (Extended Search)

Sciences & Genomics Diversity imagemap Workforce Diversity Action Plans title Diversity Committee Employment Opportunities Community Outreach Activities htmlempopps.html Read...

260

NATIONAL INSTITUTES OF HEALTH | National Cancer Institute LABORATORY OF PATHOLOGY  

E-Print Network (OSTI)

NATIONAL INSTITUTES OF HEALTH | National Cancer Institute LABORATORY OF PATHOLOGY National Cancer Institute (NCI) The Laboratory of Pathology, based in the NCI, provides clinical service in anatomic-scientists DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Cancer Institute, Center

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


261

Genome in a Bottle Consortium Workshop  

Science Conference Proceedings (OSTI)

Genome in a Bottle Consortium Workshop. Purpose: NIST ... well. Related Project(s): Genome in a Bottle Consortium. Details: ...

2013-08-13T23:59:59.000Z

262

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

AAI Home AAI Home Welcome Accelerators at Argonne Mission Organization History Document Collection Conferences & Workshops Beams and Applications Seminar Argonne-Fermilab Collaboration Lee Teng Scholarship Program Useful Links Organization The Argonne Accelerator Institute is a matrixed organization. Its members and fellows reside in programmatic Argonne divisions. The Institute reports to the Associate Laboratory Director for Photon Science), and the administrative functions of the Institute are within the PSC directorate. Director: Rodney Gerig Associate Director: Hendrik Weerts ( Director of High Energy Physics Division) Associate Director: Sasha Zholents (Director of Accelerator Systems Division) Associate Director: Robert Janssens ( Director of Argonne Physics Division)

263

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Useful Links Useful Links Argonne National Laboratory Accelerator Sites Conferences Advanced Photon Source (APS) Argonne Wakefield Accelerator (AWA) Argonne Tandem Linear Accelerator System (ATLAS) High Energy Physics Division RIA (????) Link to JACoW (Joint Accelerator Conferences Website) Fermi National Accelerator Laboratory Fermilab-Argonne Collaboration Accelerator Physics Center Workshops Other Accelerator Institutes Energy Recovering Linacs Center for Advance Studies of Accelerators (Jefferson Labs) Center for Beam Physics (LBNL) Accelerator Test Facility (BNL) The Cockcroft Institute (Daresbury, UK) John Adams Institute (Rutherford, UK) ERL2009 to be held at Cornell ERL2007 ERL2005 DOE Laboratory with Accelerators Fermilab Stanford Linear Accelerator Center Brookhaven National Laboratory

264

Institute of Metals Lecture  

Science Conference Proceedings (OSTI)

We will show that with the study of "Quantum Aerosols" we can gain insight into ... Dr. Yacaman has been a researcher of the Institute of Physics of UNAM, where ...

265

Summer Institute - Testimonials  

Science Conference Proceedings (OSTI)

... working with them, even if it was such a short time, and touring the institution ... With good luck, I will bring some of my students to tour this facility next ...

2012-12-28T23:59:59.000Z

266

EMPLOYERS STRATEGIES Correctional institutions  

E-Print Network (OSTI)

agencies Advocacy groups Federal, state and local government United Way agencies/local branches of national agencies Environmental advocacy groups Environmental periodicals Federal government Regional, stateEMPLOYERS STRATEGIES Correctional institutions Court systems Federal, state and local government

Escher, Christine

267

Joint Theory Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Program General Info Program General Info Registration Info Directions to Argonne Dynamics of Symmetry Breaking A Workshop sponsored by the ANL/UChicago Joint Theory Institute April 13-17, 2009 Argonne National Laboratory, IL The Joint Theory Institute (JTI) is a multi-disciplinary research institution jointly supported at the University of Chicago and Argonne National Laboratory to enhance collaborative research between both institutions in the broad area of theory. This year JTI sponsors a workshop the aim of which is to explore the dynamics of symmetry breaking in a broad range of systems from nuclear physics to string theory, using theoretical insights such as Dyson-Schwinger equations formalism, gauge/gravity duality and lattice QCD. We will focus on systems which exhibit dynamical symmetry breaking and will cover topics essential for understanding nonperturbative QCD and physics of quark-gluon plasma.

268

JGI - Intro to Genomics 1  

NLE Websites -- All DOE Office Websites (Extended Search)

An Introduction to Genomics: The Human Genome and Beyond An Introduction to Genomics: The Human Genome and Beyond 1 | 2 | 3 | 4 | Next>> What is genomics? THE HUMAN BODY consists of trillions of cells. Almost all contain an entire genome--the complete set of inherited genetic information encoded in our DNA. When humans reproduce, the parents' sperm and egg DNA combine to contribute a genome's worth of genetic information to the fertilized embryo. That same information is in each of the cells that eventually make up an organism. cell, DNA helix, and protein structure Some segments of DNA, called genes or "coding" DNA, contain the chemical recipe that determines particular traits; genetics is the study of the inheritance and function of these genes. Scientists now estimate that humans have about 30,000 genes, located along threadlike, tightly coiled

269

LANL Institutes - Institute of Geophysics and Planetary Physics  

NLE Websites -- All DOE Office Websites (Extended Search)

NEWS LIBRARY JOBS SITE MAP Emergency Maps Organization Goals Phone Search Science > LANL Institutes > Institute of Geophysics and Planetary Physics National Security Education...

270

Genomics Division Home  

NLE Websites -- All DOE Office Websites (Extended Search)

PIs PIs Mark Biggin Jim Bristow Jan-Fang Cheng Inna Dubchak Suzanna Lewis Chris Mungall Len Pennacchio Eddy Rubin Axel Visel Divisional Information Support Staff Seminars Diversity Directory Contact Us The characterization and analysis of genome sequences from such diverse organisms as humans to the most primitive soil microbe represent a watershed opportunity for biology. The Genomics Division is taking advantage of this wealth of new information. While it is well known that DNA encodes the basic blue print of life, it is not known how best to interpret most of this information. To address this question, laboratories within the division are developing computational, biochemical, genetic, and imaging methods to decipher the complex sequence motifs that control RNA transcription, DNA replication, and chromosome structure. The Division is

271

A physical map of the papaya genome with integrated genetic map and genome sequence  

E-Print Network (OSTI)

As a part of the genome sequencing project, we constructed ational papaya whole genome sequencing may be carried out inframework to guide the genome sequencing of related species.

2009-01-01T23:59:59.000Z

272

Comparative genomic analysis of fungal genomes reveals intron-rich ancestors  

E-Print Network (OSTI)

remain debated. Genome sequencing and comparative analysisInternational Human Genome Sequencing Consortium: Finishingreinhardtii genome structure using large-scale sequencing of

Stajich, Jason E; Dietrich, Fred S; Roy, Scott W

2007-01-01T23:59:59.000Z

273

Mitochondrial genome sequences and comparative genomics of Phytophthora ramorum and P. sojae  

E-Print Network (OSTI)

sequences and comparative genomics of Phytophthora ramorumAnnotation and comparative genomics - Annotation of codingtools for comparative genomics. Nuc Acids Res July 1:32:

Martin, Frank N.; Douda, Bensasson; Tyler, Brett M.; Boore, Jeffrey L.

2007-01-01T23:59:59.000Z

274

Coral Reef Genomics: Developing tools for functional genomics of coral symbiosis  

E-Print Network (OSTI)

Coral Reef Genomics: Developing toolsfor functional genomics of coral symbiosis Jodi SCHWARZ 1 ,symbiosis functional genomics cDNA microarray ABSTRACT

Schwarz, Jodi; Brokstein, Peter; Manohar, Chitra; Coffroth, Mary Alice; Szmant, Alina; Medina, Monica

2008-01-01T23:59:59.000Z

275

Joint Institutes | ornl.gov  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Institutes SHARE Joint Institutes ORNL, in partnership with the Science Alliance of the University of Tennessee, Knoxville, has a number of cooperative ventures in science...

276

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Mission Mission The mission of the Argonne Accelerator Institute is centered upon the following related goals: Locate next generation accelerator facilities in Northern Illinois Advance accelerator technology Oversee a selected, strategic, lab-wide, and acclaimed accelerator R&D portfolio In order to accomplish the above goals, the institute has established five objectives. These are coupled to programmatic objectives, and are dependent on each other, but they serve to identify important areas for the institute to focus its activities. Educate the "next generation" of accelerator physicists and engineers Work with area Universities to establish Joint Appointments and Adjunct Professorships Identify students Provide research opportunities at Argonne Work with the US Particle Accelerator School

277

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

AAI Home AAI Home Welcome Accelerators at Argonne Mission Organization History Document Collection Conferences & Workshops Beams and Applications Seminar Argonne-Fermilab Collaboration Lee Teng Scholarship Program Useful Links Argonne Accelerator Institute In 2006, Argonne Laboratory Director Robert Rosner formed the AAI as a focal point for accelerator initiatives. The institute works to utilize Argonne's extensive accelerator resources, to enhance existing facilities, to determine the future of accelerator development and construction, and to oversee a dynamic and acclaimed accelerator physics portfolio. More Information for: Members * Students Industrial Collaborators - Working with Argonne Link to: Accelerators for America's Future Upcoming Events and News 4th International Particle Accelerator Conference (IPAC'13)

278

The Rational Design of Security Institutions: Effects of Institutional Design on Institutional Performance .  

E-Print Network (OSTI)

??Based on the assumption that security institutions are designed rationally, I study the variations in design schemes and their possible effects on institutional performance. Military… (more)

Tandon, Aakriti A.

2012-01-01T23:59:59.000Z

279

Stockholm Environment Institute (SEI) | Open Energy Information  

Open Energy Info (EERE)

Stockholm Environment Institute (SEI) (Redirected from Stockholm Environment Institute) Jump to: navigation, search Logo: Stockholm Environment Institute Name Stockholm Environment...

280

Institutional Research & Development | National Nuclear Security...  

National Nuclear Security Administration (NNSA)

& Technology Programs > Office of Advanced Simulation and Computing and Institutional R&D Programs > Institutional Research & Development Institutional Research & Development...

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


281

Computational methods and analyses in comparative genomics and epigenomics  

E-Print Network (OSTI)

promise of comparative genomics in mammals. Science, 286,homology relationships. Genomics, Dehal, P. and Boore, J.to plant comparative genomics. Genome Research, 13(5), 999–

Peng, Qian

2012-01-01T23:59:59.000Z

282

Salt Stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics approach  

E-Print Network (OSTI)

2002. Integrating cancer genomics and proteomics in theWeb site for comparative genomics. Genome Res 15:1015-22.Hildenborough: An integrated genomics approach. Aindrila

Mukhopadhyay, Aindrila

2010-01-01T23:59:59.000Z

283

Single Cell Whole Genome Amplification  

NLE Websites -- All DOE Office Websites (Extended Search)

Single Cell Whole Genome Amplification Single Cell Whole Genome Amplification of Uncultivated Organisms Mircea Podar , Martin Keller , and Philip Hugenholtz (* ü ) Abstract Whole genome amplification of single cells is emerging as a powerful technique for accessing the genomes of individual members of microbial communi- ties without the complication of identifying the source of sequence data posed by shotgun sequencing of environmental samples (metagenomics). This method holds particular promise for the molecular unveiling of uncultivated organisms that com- prise the bulk of the microbial diversity and functionality on our planet. 1 Introduction Over the last two decades, it has become increasingly apparent that microbial diversity

284

ORNL Genome Analysis Pipeline - Eukaryotic  

NLE Websites -- All DOE Office Websites (Extended Search)

Grail (Microbial Gene Prediction System Internet Link) GrailEXP Genome Analysis Pipeline DomainParser PROSPECT (PROtein Structure Prediction and Evaluation Computer...

285

genome109280 634..641  

NLE Websites -- All DOE Office Websites (Extended Search)

(http: www.phytozome.net), Selaginella moellendorffii (http:www. phytozome.net), Sorghum bicolor (http:genome.jgi-psf.org Sorbi1), Vitis vinifera (http:...

286

Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans  

E-Print Network (OSTI)

PLoS BIOLOGY Population Genomics: Whole-Genome Analysis ofwww.plosbiology.org Population Genomics of D. simulans Table11 | e310 Population Genomics of D. simulans Table S15. GO

2007-01-01T23:59:59.000Z

287

Human Genome Program Image Gallery (from genomics.energy.gov)  

DOE Data Explorer (OSTI)

This collection contains approximately 240 images from the genome programs of DOE's Office of Science. The images are divided into galleries related to biofuels research, systems biology, and basic genomics. Each image has a title, a basic citation, and a credit or source. Most of the images are original graphics created by the Genome Management Information System (GMIS). GMIS images are recognizable by their credit line. Permission to use these graphics is not needed, but please credit the U.S. Department of Energy Genome Programs and provide the website http://genomics.energy.gov. Other images were provided by third parties and not created by the U.S. Department of Energy. Users must contact the person listed in the credit line before using those images. The high-resolution images can be downloaded.

288

Genome Majority Vote (GMV), Version 0.x  

NLE Websites -- All DOE Office Websites (Extended Search)

Genome Majority Vote (GMV), Version 0.x Genome Majority Vote (GMV), Version 0.x The pipeline runs PRODIGAL gene predictions on all genomes, runs pan-reciprocal BLAST, and...

289

The evolution of genome size in ants  

E-Print Network (OSTI)

for future whole-genome sequencing projects. Page 1 of 9 (genotyping to whole-genome sequencing [1-3]. The genomeconsideration for whole-genome sequencing programs, our

Tsutsui, Neil D; Suarez, Andrew V; Spagna, Joseph C; Johnston, J Spencer

2008-01-01T23:59:59.000Z

290

One Bacterial Cell, One Complete Genome  

E-Print Network (OSTI)

Bader JS, et al. (2005) Genome sequencing in microfabricatedDR (2006) Whole-genome re-sequencing. Curr Opin Genet DevSingle cell MDA and genome sequencing The yellow portion of

Woyke, Tanja

2010-01-01T23:59:59.000Z

291

Rearrangement Phylogeny of Genomes in Contig Form  

Science Conference Proceedings (OSTI)

There has been a trend in increasing phylogenetic coverage for genome sequencing while decreasing the sequencing coverage for each genome. With lower coverage, there is an increasing number of genomes being published in contig form. Rearrangement algorithms, ...

Adriana Muñoz; David Sankoff

2009-04-01T23:59:59.000Z

292

Tissue sampling and standards for vertebrate genomics  

E-Print Network (OSTI)

and standards for vertebrate genomics. GigaScience 2012 1:8.transition to conservation genomics. TIG 2010, 26:177–187.Siemens DH: Ecological genomics––changing perspectives on

2012-01-01T23:59:59.000Z

293

PLATCOM: a platform for computational comparative genomics  

E-Print Network (OSTI)

The exponential accumulation of genomic sequence data demands systematic analysis of genetic information and requires use of various computational approaches to handle such huge sets of genomic data. Comparative genomics,

Kwangmin Choi; Jeong-hyeon Choi; Amit Saple; Zhiping Wang; Jason Lee; Sun Kim

2005-01-01T23:59:59.000Z

294

Genome Halving by Block Interchange  

E-Print Network (OSTI)

We address the problem of finding the minimal number of block interchanges (exchange of two intervals) required to transform a duplicated linear genome into a tandem duplicated linear genome. We provide a formula for the distance as well as a polynomial time algorithm for the sorting problem.

Thomas, Antoine; Varré, Jean-Stéphane

2011-01-01T23:59:59.000Z

295

Transportation Institutional Plan  

SciTech Connect

This Institutional Plan is divided into three chapters. Chapter 1 provides background information, discusses the purposes of the Plan and the policy guidance for establishing the transportation system, and describes the projected system and the plans for its integrated development. Chapter 2 discusses the major participants who must interact to build the system. Chapter 3 suggests mechanisms for interaction that will foster wide participation in program planning and implementation and provides a framework for managing and resolving the issues related to development and operation of the transportation system. A list of acronyms and a glossary are included for the reader's convenience. Also included in this Plan are four appendices. Of particular importance is Appendix A, which includes detailed discussion of specific transportation issues. Appendices B, C, and D provide supporting material to assist the reader in understanding the roles of the involved institutions.

1986-08-01T23:59:59.000Z

296

Human Genome Research: Decoding DNA  

NLE Websites -- All DOE Office Websites (Extended Search)

Human Genome Research: Decoding DNA Human Genome Research: Decoding DNA Resources with Additional Information Charles DeLisi As head of DOE's Office of Health and Environmental Research, Charles DeLisi played a pivotal role in proposing and initiating the Human Genome Program in 1986. The U.S. Department of Energy (DOE) has historically been active in supporting human genome research. On September 10, 2003, Secretary of Energy Spencer Abraham presented the Secretary's Gold Award to Aristides Patrinos and Francis Collins for their leadership of the government's Human Genome Project. At DOE's Office of Science, Dr. Patrinos is the Associate Director for Biological and Environmental Research. He has been a researcher at the department's Oak Ridge National Laboratory and Brookhaven National Laboratory.

297

Introduction to Metagenomics at DOE JGI: Program Overview and Program Informatics (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)  

Science Conference Proceedings (OSTI)

Susannah Tringe of the DOE Joint Genome Institute talks about the Program Overview and Program Informatics at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011

Tringe, Susannah [DOE JGI

2011-10-12T23:59:59.000Z

298

Institution Name Institution Name Address Place Zip Notes Website Region  

Open Energy Info (EERE)

Institute for the Built Environment CSU Institute for the Built Institute for the Built Environment CSU Institute for the Built Environment Oval Drive Fort Collins Colorado http www ibe colostate edu Rockies Area Colorado Renewable Energy Collaboratory Colorado Renewable Energy Collaboratory th Street Suite Denver Colorado http www coloradocollaboratory org Rockies Area Colorado School of Mines Colorado Energy Research Institute Colorado School of Mines Colorado Energy Research Institute Illinois Street Golden Colorado http www ceri mines org Rockies Area Denver University International Institute for Environment and Enterprise Denver University International Institute for Environment and Enterprise S University Blvd Denver Colorado http www du edu enviro Research htm Rockies Area EverSealed Windows Inc EverSealed Windows Inc Interlocken Drive Evergreen

299

Draft Genome Sequence  

NLE Websites -- All DOE Office Websites (Extended Search)

Draft Draft Genome Sequence of Serratia sp. Strain ATCC 39006, a Model Bacterium for Analysis of the Biosynthesis and Regulation of Prodigiosin, a Carbapenem, and Gas Vesicles Peter C. Fineran, a Marina C. Iglesias Cans, a Joshua P. Ramsay, b Nabil M. Wilf, b Desiree Cossyleon, a Matthew B. McNeil, a Neil R. Williamson, b Rita E. Monson, b S. Anette Becher, c Jo-Ann L. Stanton, d Kim Brügger, e Steven D. Brown, f George P. C. Salmond b Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand a ; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom b ; AgResearch Ltd., Invermay Agricultural Centre, Mosgiel, New Zealand c ; Department of Anatomy, University of Otago, Dunedin, New Zealand d ; EASIH, University of Cambridge, Addenbrooke's Hospital, Cambridge, United Kingdom e ; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge,

300

Yeast Ancestral Genome Reconstructions - CECM - Simon Fraser ...  

E-Print Network (OSTI)

on eukaryotic nuclear genomes are based on parsimony (some statistical methods have been used on mitochondrial or bacterial genomes, see Darling et al.

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


301

BMC Genomics BioMed Central  

E-Print Network (OSTI)

Research article What can you do with 0.1 × genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)

David A Rasmussen; Mohamed Af Noor

2009-01-01T23:59:59.000Z

302

List of all HEP Institutions  

NLE Websites -- All DOE Office Websites (Extended Search)

Top 500 Top 500 HEP and Astrophysics Institutions by Country This document lists the 500 major high-energy physics and astrophysics institutions, sorted by country. Each listing will show a [SPIRES Entry] which gives the full address and phone/fax/url of the institution in addition to links to papers in HEP and people in HEPNAMES. The [Home page], where known, takes you directly to the departmental home page. Alternatively try our INSTITUTIONS search page. This list of the top 500 institutions is chosen by the number of papers from each institution in the past 5 years. Click here for the full list of HEP institutions. Please send any comments, corrections, updates or information on new institutions to: inst@slac.stanford.edu. Last modified at 17:12:32 on 06/30/04.

303

Three New Manufacturing Innovation Institutes  

Science Conference Proceedings (OSTI)

... $200 million across five Federal agencies – Defense, Energy, Commerce, NASA ... a pilot institute headquartered in Youngstown, Ohio, the President ...

304

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Fermilab Collaboration Fermilab Collaboration Lee Teng Scholarship Program Useful Links The Argonne Accelerator Institute Historical Document Collection Document Access Guide The documents in this collection are held in several repositories, some of which have restricted access. This guide explains the different types of access, and specifies the access levels for each repository. Repositories Name Access Argonne National Laboratory Document Open Access Argonne Research Library Hard Copy Only Beam Dynamics Newsletter Open Access DOE Information Bridge Open Access IEEE Xplore Library Subscription Required JACoW Open Access Journal of Applied Physics Subscription Required Nuclear Instruments & Methods in Physics Research, Section A Subscription Required Physical Review A Subscription Required

305

Human genome. 1993 Program report  

SciTech Connect

The purpose of this report is to update the Human Genome 1991-92 Program Report and provide new information on the DOE genome program to researchers, program managers, other government agencies, and the interested public. This FY 1993 supplement includes abstracts of 60 new or renewed projects and listings of 112 continuing and 28 completed projects. These two reports, taken together, present the most complete published view of the DOE Human Genome Program through FY 1993. Research is progressing rapidly toward 15-year goals of mapping and sequencing the DNA of each of the 24 different human chromosomes.

Not Available

1994-03-01T23:59:59.000Z

306

Draft Transportation Institutional Plan  

SciTech Connect

The Department of Energy recognizes that the success of its program to develop and implement a national system for nuclear waste management and disposal depends on broad-based public understanding and acceptance. While each program element has its particular sensitivity, the transportation of the waste may potentially affect the greatest number of people, and accordingly is highly visible and potentially issue-laden. Therefore, the Office of Civilian Radioactive Waste Management has developed this Transportation Institutional Plan to lay the foundation for interaction among all interested parties for the purpose of identifying and resolving issues of concern. The Plan is divided into four chapters. Chapter 1 provides bachground information and discusses the purpose of the Plan and the policy guidance for establishing the transportation system. Chapter 2 introduces the major participants who must interact to build both the system itself and the consensus philosophy that is essential for effective operations. Chapter 3 suggests mechanisms for interaction that will ensure wide participation in program planning and implementation. And, finally, Chapter 4 suggests a framework for managing and resolving the issues related to development and operation of the transportation system. A list of acronyms and a glossary are included for the reader's convenience. The Plan's appendices provide supporting material to assist the reader in understanding the roles of the involved institutions. 4 figs., 1 tab.

1985-09-01T23:59:59.000Z

307

A meeting of the minds on the genome project  

SciTech Connect

There has been some resentment over the the rapidly expanding budget for the Human Genome Project. The genome project is budgeted at nearly $90 million at NIH and $46 million at DOE. Some critics believe this is not being fair to other research efforts. There has also been some differences in opinion in the project's research plans. Bernard Davis of Harvard Medical School supports the first goal of the genome project, mapping the human chromosomes, and thinks sequencing model organisms is a good idea. However, he can't see the value in working out every nucleotide base in the human genome. But, once it was impressed upon Davis that no one is contemplating all-out sequencing for at least 5 years, and even then only if the cost comes down, he endorsed the current plan to map and partially sequence complementary DNAs, or expressed genes. Another skeptic, Don Brown of Carnegie Institution, is opposed to the way the project is organised. Brown's biggest objection is to targeted research, especially the creation of centers to carry out specific research tasks.

Pool, R.

1990-11-09T23:59:59.000Z

308

Information entropy based methods for genome comparison  

Science Conference Proceedings (OSTI)

A plethora of biologically useful information lies obscured in the genomes of organisms. Encoded within the genome of an organism is the information about its evolutionary history. Evolutionary signals are scattered throughout the genome. Bioinformatics ... Keywords: clustering, genome comparison, segmentation, sequence alignment, shannon entropy

Mehul Jani; Rajeev K. Azad

2013-05-01T23:59:59.000Z

309

Genomic Aspects of Research Involving Polyploid Plants  

Science Conference Proceedings (OSTI)

Almost all extant plant species have spontaneously doubled their genomes at least once in their evolutionary histories, resulting in polyploidy which provided a rich genomic resource for evolutionary processes. Moreover, superior polyploid clones have been created during the process of crop domestication. Polyploid plants generated by evolutionary processes and/or crop domestication have been the intentional or serendipitous focus of research dealing with the dynamics and consequences of genome evolution. One of the new trends in genomics research is to create synthetic polyploid plants which provide materials for studying the initial genomic changes/responses immediately after polyploid formation. Polyploid plants are also used in functional genomics research to study gene expression in a complex genomic background. In this review, we summarize the recent progress in genomics research involving ancient, young, and synthetic polyploid plants, with a focus on genome size evolution, genomics diversity, genomic rearrangement, genetic and epigenetic changes in duplicated genes, gene discovery, and comparative genomics. Implications on plant sciences including evolution, functional genomics, and plant breeding are presented. It is anticipated that polyploids will be a regular subject of genomics research in the foreseeable future as the rapid advances in DNA sequencing technology create unprecedented opportunities for discovering and monitoring genomic and transcriptomic changes in polyploid plants. The fast accumulation of knowledge on polyploid formation, maintenance, and divergence at whole-genome and subgenome levels will not only help plant biologists understand how plants have evolved and diversified, but also assist plant breeders in designing new strategies for crop improvement.

Yang, Xiaohan [ORNL; Ye, Chuyu [ORNL; Tschaplinski, Timothy J [ORNL; Wullschleger, Stan D [ORNL; Tuskan, Gerald A [ORNL

2011-01-01T23:59:59.000Z

310

Synthetic Genomics: Options for Governance  

E-Print Network (OSTI)

Gene and genome synthesis, that is, constructing long stretches of DNA from constituent chemicals, provides scientists with new and unparalleled capabilities both for understanding biology and for using it for beneficial ...

Garfinkel, Michele

2007-10-17T23:59:59.000Z

311

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence  

E-Print Network (OSTI)

and physical maps, genome sequencing, marker-assistedof scaffolds during genome sequencing. To use RJs in SNPallows for deep genome coverage sequencing, a prerequisite

2011-01-01T23:59:59.000Z

312

Institutional analysis for energy policy  

SciTech Connect

This report summarizes principles, techniques, and other information for doing institutional analyses in the area of energy policy. The report was prepared to support DOE's Regional Issues Identification and Assessment (RIIA) program. RIIA identifies environmental, health, safety, socioeconomic, and institutional issues that could accompany hypothetical future scenarios for energy consumption and production on a regional basis. Chapter 1 provides some theoretical grounding in institutional analysis. Chapter 2 provides information on constructing institutional maps of the processes for bringing on line energy technologies and facilities contemplated in RIIA scenarios. Chapter 3 assesses the institutional constraints, opportunities, and impacts that affect whether these technologies and facilities would in fact be developed. Chapters 4 and 5 show how institutional analysis can support use of exercises such as RIIA in planning institutional change and making energy policy choices.

Morris, F.A.; Cole, R.J.

1980-07-01T23:59:59.000Z

313

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Welcome Welcome In 2006, Argonne laboratory director Robert Rosner formed the AAI as a focal point for accelerator initiatives. The institute works to utilize Argonne's extensive accelerator resources, to enhance existing facilities, to determine the future of accelerator development and construction, and to oversee a dynamic and acclaimed accelerator physics portfolio. I invite you to look around the content of this web site. Accelerators at Argonne describes our rich heritage in this field, particularly with respect to the development and support of user facilities. Initiatives describes the things we are hoping to do, and Research & Development discusses our research portfolio. If you are a graduate or undergraduate student wishing to pursue a career in accelerator science or technology, please see Educational

314

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

ZGS -- Zero Gradient Synchrotron (operation: 1963 - 1979) ZGS -- Zero Gradient Synchrotron (operation: 1963 - 1979) The ZGS was a 12 GeV weak-focusing proton synchrotron. It was the first high energy physics accelerator located between the U.S. coasts. The ZGS was also the first synchrotron to accelerate spin polarized protons and the first to use H-minus injection. Other noteworthy features of the ZGS program were the large number of university-based users and the pioneering development of large superconducting magnets for bubble chambers and beam transport. References - Document Access Guide History of the ZGS, Argonne, 1979, American Institute of Physics, AIP Conference Proceedings No. 60 (1980). (Located in the Argonne Research Library) High Energy Physics at Argonne National Laboratory, A. Crewe, R.

315

Argonne Accelerator Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

The Argonne Accelerator History Document Collection The Argonne Accelerator History Document Collection The Argonne Accelerator Institute (AAI) has established a special collection of archived documents which describe notable Argonne accelerator work of the past 50 years. A list of such Argonne Accelerator Projects is given below. Each project is described briefly, with links to archived documents in this collection. This collection includes important Argonne accelerator documents which may have become difficult to locate, as well as ones which have broad scope. In keeping with its historical purpose, this collection only covers work done 10 or more years ago. Many of the listed documents are available online. We hope to make more of them available online in the future. [For several of the projects, interesting additional online documents can be found by

316

Low Dose Radiation Research Program: Induction of Genomic Instability in  

NLE Websites -- All DOE Office Websites (Extended Search)

Induction of Genomic Instability in vivo by Low Doses of 137Cs y Induction of Genomic Instability in vivo by Low Doses of 137Cs y rays, Authors: K. Rithidech1, E.B. Whorton2, M. Tungjai1, E. Ar-Bab1, S.R. Simon1, M. Tawde3 and C.W. Anderson3. Institutions: 1Pathology Department, Stony Brook University, NY 11794-8691, USA, 2University of Texas Medical Branch at Galveston, TX 77550-1047,3Biology Department, Brookhaven National Laboratory, Upton, NY 11973-5000. Information on potential health hazards of radiation at doses below or equal to the level traditionally requiring human radiation protection (less than or equal to 10 cGy) is currently lacking. It is therefore important to characterize early and subsequent in vivo biological response induced by low doses of ionizing radiation because such data should provide information that can help determine whether radiation at this dose level

317

DOE Solar Decathlon: New York Institute of Technology: Instituting  

NLE Websites -- All DOE Office Websites (Extended Search)

New York Institute of Technology's solar house in its permanent location at the U.S. Merchant Marine Academy. New York Institute of Technology's solar house in its permanent location at the U.S. Merchant Marine Academy. Enlarge image Green Machine/Blue Space relies on a hydrogen fuel cell to convert and store energy collected by the house's photovoltaic system. (Courtesy of Kevin Rodgers/U.S. Merchant Marine Academy) Who: New York Institute of Technology What: Green Machine/ Blue Space Where: U.S. Merchant Marine Academy 300 Steamboat Road Kings Point, NY 11024 Map This House Public tours: Not available Solar Decathlon 2005 New York Institute of Technology: Instituting Technology New York Institute of Technology partnered with the U.S. Merchant Marine Academy to develop a solar-powered house for the U.S. Department of Energy Solar Decathlon 2005. The house, called Green Machine/Blue Space, was

318

Institution Name Institution Name Address Place Zip Notes Website Region  

Open Energy Info (EERE)

Institution Name Institution Name Address Place Zip Notes Website Region Institution Name Institution Name Address Place Zip Notes Website Region ARCH Venture Partners Texas ARCH Venture Partners Texas Bridgepoint Parkway Bldg Suite Austin Texas http www archventure com Texas Area ARCH Venture Partners Washington ARCH Venture Partners Washington Second Avenue Suite Seattle Washington http www archventure com Pacific Northwest Area African Wind Energy Association South Africa African Wind Energy Association South Africa South Africa http www afriwea org en south africa htm Alternative Energy Institute Alternative Energy Institute russell long blvd Canyon Texas http www windenergy org Texas Area Applied Process Engineering Laboratory Applied Process Engineering Laboratory Hills Street Suite Richland Washington http www apel org

319

Stockholm Environment Institute (SEI) | Open Energy Information  

Open Energy Info (EERE)

Stockholm Environment Institute (SEI) Jump to: navigation, search Logo: Stockholm Environment Institute Name Stockholm Environment Institute Address Kraftriket 2B, SE-106 91 Place...

320

JIBS | Joint Institute for Biological Sciences | ORNL  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Institute for Biological Sciences SHARE Joint Institute for Biological Sciences The Joint Institute of ORNL and the University of Tennessee has a single mission: to enable...

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
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321

Honda Research Institute | Open Energy Information  

Open Energy Info (EERE)

Name Honda Research Institute Place Mountain View, California Sector Biofuels, Solar Product California-based research institute of Honda. The institute conducts research into...

322

Form:Research Institution | Open Energy Information  

Open Energy Info (EERE)

Research Institution Jump to: navigation, search Add a Research or Development Institution Input your research or development institution name below to add to the registry. If your...

323

Partnering Institution Name Partnering Institution Name Place Type  

Open Energy Info (EERE)

Partnering Institution Name Partnering Institution Name Place Type Partnering Institution Name Partnering Institution Name Place Type of Partnership Partner Center Partner Year Partner Description Link Technologies Technologies North Lexington Massachusetts Incubator National Center for Photovoltaics M M St Paul Minnesota CRADA http www nrel gov pv pv manufacturing html A O Smith A O Smith Milwaukee Wisconsin Test Evaluation Partner Electricity Resources Building Systems Integration A123Systems A123Systems Watertown Massachusetts CRADA Transportation Technologies and Systems http www nrel gov news press html AAON AAON Tulsa Oklahoma Test Evaluation Partner Electricity Resources Building Systems Integration AQUA Products AQUA Products Prosperity South Carolina Test Evaluation Partner Electricity Resources Building Systems Integration

324

Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches  

E-Print Network (OSTI)

SK, Bonanno JB. Structural genomics. Methods Biochem AnalMizuguchi K. Structural genomics: an overview. Prog BiophysSE. A tour of structural genomics. Nat Rev Genet 2001;2(10):

Chandonia, John-Marc; Brenner, Steven E.

2004-01-01T23:59:59.000Z

325

CALIFORNIA INSTITUTE OF TECHNOLOGY APPLICATION CHECKLIST  

E-Print Network (OSTI)

CALIFORNIA INSTITUTE OF TECHNOLOGY APPLICATION CHECKLIST Applicants are encouraged to submit Testing Service to the California Institute of Technology (Institutional Code 4034) Requested Code 23087 California Institute of Technology Pasadena, CA 91125 Note: DO NOT send your

Greer, Julia R.

326

Human Genome Education Program  

Science Conference Proceedings (OSTI)

The funds from the DOE Human Genome Program, for the project period 2/1/96 through 1/31/98, have provided major support for the curriculum development and field testing efforts for two high school level instructional units: Unit 1, ''Exploring Genetic Conditions: Genes, Culture and Choices''; and Unit 2, ''DNA Snapshots: Peaking at Your DNA''. In the original proposal, they requested DOE support for the partial salary and benefits of a Field Test Coordinator position to: (1) complete the field testing and revision of two high school curriculum units, and (2) initiate the education of teachers using these units. During the project period of this two-year DOE grant, a part-time Field-Test Coordinator was hired (Ms. Geraldine Horsma) and significant progress has been made in both of the original proposal objectives. Field testing for Unit 1 has occurred in over 12 schools (local and non-local sites with diverse student populations). Field testing for Unit 2 has occurred in over 15 schools (local and non-local sites) and will continue in 12-15 schools during the 96-97 school year. For both curricula, field-test sites and site teachers were selected for their interest in genetics education and in hands-on science education. Many of the site teachers had no previous experience with HGEP or the unit under development. Both of these first-year biology curriculum units, which contain genetics, biotechnology, societal, ethical and cultural issues related to HGP, are being implemented in many local and non-local schools (SF Bay Area, Southern California, Nebraska, Hawaii, and Texas) and in programs for teachers. These units will reach over 10,000 students in the SF Bay Area and continues to receive support from local corporate and private philanthropic organizations. Although HGEP unit development is nearing completion for both units, data is still being gathered and analyzed on unit effectiveness and student learning. The final field testing result from this analysis will contribute to the final revisions of each unit during the second-year of this grant.

Richard Myers; Lane Conn

2000-05-01T23:59:59.000Z

327

PNNL: About PNNL - Institutional Partnerships  

NLE Websites -- All DOE Office Websites (Extended Search)

whom we engage at the institutional level, inviting them to provide input into the Laboratory strategy. Joint Appointments To enable long term strategic collaborations with...

328

Institute for Plasma Research - TMS  

Science Conference Proceedings (OSTI)

VISIT THE JOM COVER GALLERY. BACK TO RESULTS. SEARCH AGAIN. Institute for Plasma Research. Division - FCIPT, B-15-17/P, GIDC, • Electronics zone, ...

329

WIPP - Passive Institutional Controls (PICs)  

NLE Websites -- All DOE Office Websites (Extended Search)

Energy has developed a program for the development of Passive Institutional Controls to alert future generations to the potential hazards of intersecting the Waste Isolation Pilot...

330

Institutional Plan FY 2003 - 2007  

E-Print Network (OSTI)

III. LABORATORY STRATEGIC PLAN DOE Program Focus on ResultsInstitutional Plan addresses the strategic goals of DOE andbelow does not support those elements of the strategic plan

Chartock, Michael; Hansen, Todd

2002-01-01T23:59:59.000Z

331

Genomics.energy.gov--genome programs of the U.S. Department of...  

NLE Websites -- All DOE Office Websites (Extended Search)

in environmental-waste cleanup, energy production, carbon cycling, and biotechnology. Genomics Image Gallery Visit this site for free downloadable, high-resolution, genomics...

332

NATIONAL INSTITUTES OF HEALTH National Institutes of Health  

E-Print Network (OSTI)

OF HEALTH AND HUMAN SERVICES FY 2002 #12;TABLE OF CONTENTS VOLUME 1 Foreword of an Interdisciplinary Approach.................................17 Section III: Department of Health and Human ServicesNATIONAL INSTITUTES OF HEALTH National Institutes of Health Strategic Research Plan and Budget

Bandettini, Peter A.

333

Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity  

E-Print Network (OSTI)

management of the genome sequencing. References Altschul,species revealed the core genome, sequencing of 12 isolatesrevealed by ongoing genome sequencing projects. Although

Walker, C.B.

2010-01-01T23:59:59.000Z

334

Genome Project Standards in a New Era of Sequencing  

E-Print Network (OSTI)

for clone- based human genome sequencing, this finishing20850, USA  Human Genome Sequencing Center, Baylor College USA  HudsonAlpha Genome Sequencing Center, HudsonAlpha 

Hostetler, J.

2010-01-01T23:59:59.000Z

335

Complete genome sequence of Desulfomicrobium baculatum type strain (XT)  

E-Print Network (OSTI)

is deposited in Genome sequencing and annotation Genomeof Life, GEBA Table 2. Genome sequencing project informationand DNA isolation Genome sequencing and assembly tions to

Copeland, Alex

2010-01-01T23:59:59.000Z

336

Genomic Sequencing of Single Microbial Cells from Environmental Samples  

E-Print Network (OSTI)

as function of the genome sequencing effort. AdditionalYJ, Chen Z, et al. : Genome sequencing in microfabricatedof whole genome amplification and sequencing. Mechanical

Ishoey, Thomas

2010-01-01T23:59:59.000Z

337

Genomic analysis of high pressure adaptation in deep sea bacteria  

E-Print Network (OSTI)

This makes the genome sequencing project of Carnobacteriumpiezophile to undergo genome sequencing. Investigation intoMarine Microbial Genome Sequencing project. The initial

Stratton, Taylor Kristen

2008-01-01T23:59:59.000Z

338

Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)  

E-Print Network (OSTI)

with type strain genome sequencing projects registered inResearch, Braunschweig) Genome sequencing and annotationthe complete Table 2. Genome sequencing project information

Clum, Alicia

2010-01-01T23:59:59.000Z

339

Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum  

E-Print Network (OSTI)

Page Incorporating Genomics and Bioinformatics across the2007) Discovering Genomics, Proteomics, and Bioinformatics,2003) Public access for teaching genomics, proteomics, and

Ditty, Jayna L.

2012-01-01T23:59:59.000Z

340

Genomes containing Duplicates are Hard to compare ... - CECM  

E-Print Network (OSTI)

and other genomic markers are common in genomes, due to several evolutionary . mechanisms, like gene duplication or whole genomes duplications [San01].

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


341

Dissection of Plant Defense Mechanisms Using Chemical and Molecular Genomics  

E-Print Network (OSTI)

of auxins by a chemical genomics approach." Journal ofadvances in chemical genomics." Current Medicinal Chemistrymolecular and chemical genomics." Phytopathology 97(7): S58-

Rodriguez-Salus, Melinda Sue

2012-01-01T23:59:59.000Z

342

Validation in Genomics: CpG Island Methylation Revisited  

E-Print Network (OSTI)

analysis. In: Functional Genomics: Methods and Protocols, M.Segal: Validation in Genomics: CpG Island Methylationpackage and applications to genomics. Bioinformatics and

Segal, Mark R

2006-01-01T23:59:59.000Z

343

Comparative genomics and evolution of eukaryotic phospholipid biosynthesis  

E-Print Network (OSTI)

S. Banfi and B. Franco, Genomics 55 (1999) 68-77. F. Simmer,Comparative genomics and evolution of eukaryoticwork utilizes comparative genomics and phylogenetics for

Lykidis, Athanasios

2006-01-01T23:59:59.000Z

344

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper  

E-Print Network (OSTI)

Potnis et al. : Comparative genomics reveals diversity amongtomato and pepper. BMC Genomics Submit your next manuscriptpv. syringae Potnis et al. BMC Genomics 2011, 12:146 http://

2011-01-01T23:59:59.000Z

345

Genomics of emerging infectious disease: A PLoS collection.  

E-Print Network (OSTI)

Origins and evolutionary genomics of the 2009 swine-originan Infectious Diseases Genomics Project predict and preventRavel J (2009) The role of genomics in the identification,

Eisen, Jonathan A; MacCallum, Catriona J

2009-01-01T23:59:59.000Z

346

TOPSAN: a collaborative annotation environment for structural genomics.  

E-Print Network (OSTI)

environment for structural genomics Dana Weekes 1† , S Srihigh-throughput structural genomics centers, despite theirbeing determined by structural genomics centers and high-

Weekes, Dana; Krishna, S; Bakolitsa, Constantina; Wilson, Ian A; Godzik, Adam; Wooley, John

2010-01-01T23:59:59.000Z

347

Application of Statistical Methods to Integrative Analysis of Genomic Data  

E-Print Network (OSTI)

in functional genomics . . . . . . . . . . . . . . . . . 1.3throughput technologies in genomics and proteomics promotesElizabeth A. Winzeler. “Genomics, gene expression and DNA

Kim, Kyung Pil

2013-01-01T23:59:59.000Z

348

D.: Genome halving with an outgroup  

E-Print Network (OSTI)

Abstract: Some genomes are known to have incurred a genome doubling (tetraploidization) event in their evo lutionary history, and this is reflected today in patterns of duplicated segments scattered throughout their chromosomes. These duplications may be used as data to “halve ” the genome, i.e. to reconstruct the an cestral genome at the moment of tetraploidization, but the solution is often highly non- unique. To resolve this problem, we adapt the genome halving algorithm of El-Mabrouk and Sankoff to take account of an external reference genome. We apply this to reconstruct the tetraploid ancestor of maize, using either rice or sorghum as the reference.

Chunfang Zheng; Qian Zhu; David Sankoff

2006-01-01T23:59:59.000Z

349

Genomics of Energy and Environment, 2010: Video Presentations from the Fifth DOE Joint Genome Institute Annual User Meeting  

DOE Data Explorer (OSTI)

•\tThe Promise and Challenge of Producing Biofuel Feedstocks: An Ecological Perspective, Evan DeLucia

350

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata  

E-Print Network (OSTI)

constantly monitoring genome sequencing projects worldwideas part of the Whole Genome Sequencing (WGS) project.large scale microbial genome sequencing programs have been

Liolios, Konstantinos

2008-01-01T23:59:59.000Z

351

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata  

E-Print Network (OSTI)

large-scale microbial genome sequencing initiatives, e.g. ,in the history of genome sequencing projects: the completedfor publication of genome sequencing projects require the

Liolios, Konstantinos

2010-01-01T23:59:59.000Z

352

Archipelagos Institute of Marine Conservation  

E-Print Network (OSTI)

Page 1 Archipelagos Institute of Marine Conservation www.archipelago.gr VOLUNTEER RESEARCHER GUIDE of Marine Conservation. As an Archipelagos volunteer researcher, you are expected to abide by these policies. Introduction Archipelagos, Institute of Marine Conservation is a Greek, non-profit, non- governmental

353

Gerber-JGI  

NLE Websites -- All DOE Office Websites (Extended Search)

NERSC for the NERSC for the Joint Genome Institute Richard Gerber NERSC User Services May 2, 2011 Joint Genome Institute, Walnut Creek, CA 2 * What is NERSC? * Computing Resources * Storage Resources * How to Get Help * Accounts and Allocations * Connecting to NERSC * Computing Environment * Compiling Code * Running Jobs Outline What is NERSC? 3 !"#$% &'% ()$% *+'% ()"% ,*'% -)"% *+'% .)/% *&'% 0/% **'% 2010 Allocations 4 * NERSC serves a large population Over 3000 users, 400 projects, 500 code instances * Focus on "unique" resources - Expert consulting and other services - High end computing systems - High end storage systems - Interface to high speed networking * Science-driven - Machines procured competitively using application benchmarks from DOE/SC

354

Materials Genome®: CALPHAD, ESPEI, and Beyond  

Science Conference Proceedings (OSTI)

Materials Genomics Past & Future: From CALPHAD to Flight · Modelling the Properties of Multi-Component Commercial Alloys · Molecular Dynamics ...

355

Robust classifying of prokaryotic genomes  

Science Conference Proceedings (OSTI)

In this paper, we propose a method to classify prokaryotic genomes using the agglomerative information bottleneck method for unsupervised clustering. Although the method we present here is closely related to a group of methods based on detecting the ... Keywords: Agglomerative clustering, COGs, Gene length, IB, Information bottleneck method, Jackknifing, NJ, Phylogenomics, UPGMA

Katerina Korenblat; Zeev Volkovich; Alexander Bolshoy

2012-10-01T23:59:59.000Z

356

Nuclear Organization and Genome Function  

E-Print Network (OSTI)

Nuclear Organization and Genome Function Kevin Van Bortle and Victor G. Corces Department-range interactions and have proposed roles in nuclear organization. In this review, we explore recent findings for the roles of insulators in nuclear organization. 163 Annu.Rev.CellDev.Biol.2012.28:163-187.Downloadedfromwww

Corces, Victor G.

357

Genomes and evolution Editorial overview  

E-Print Network (OSTI)

. co/i is true for the elephant", asserted Jacques Monod [l] during the heroic age of molecular biology-effective strategy to develop genome sequencing infrastructure as well as to provide grist for biologists' mills and illustrates the utility of studying things in pairs. These two species are highly divergent evolutionarily

Boguski, Mark S.

358

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation  

SciTech Connect

Background: The emergence of next generation sequencing (NGS) has provided the means for rapid and high throughput sequencing and data generation at low cost, while concomitantly creating a new set of challenges. The number of available assembled microbial genomes continues to grow rapidly and their quality reflects the quality of the sequencing technology used, but also of the analysis software employed for assembly and annotation. Methodology/Principal Findings: In this work, we have explored the quality of the microbial draft genomes across various sequencing technologies. We have compared the draft and finished assemblies of 133 microbial genomes sequenced at the Department of Energy-Joint Genome Institute and finished at the Los Alamos National Laboratory using a variety of combinations of sequencing technologies, reflecting the transition of the institute from Sanger-based sequencing platforms to NGS platforms. The quality of the public assemblies and of the associated gene annotations was evaluated using various metrics. Results obtained with the different sequencing technologies, as well as their effects on downstream processes, were analyzed. Our results demonstrate that the Illumina HiSeq 2000 sequencing system, the primary sequencing technology currently used for de novo genome sequencing and assembly at JGI, has various advantages in terms of total sequence throughput and cost, but it also introduces challenges for the downstream analyses. In all cases assembly results although on average are of high quality, need to be viewed critically and consider sources of errors in them prior to analysis. Conclusion: These data follow the evolution of microbial sequencing and downstream processing at the JGI from draft genome sequences with large gaps corresponding to missing genes of significant biological role to assemblies with multiple small gaps (Illumina) and finally to assemblies that generate almost complete genomes (Illumina+PacBio).

Mavromatis, K [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Brettin, Thomas S [ORNL; Quest, Daniel J [ORNL; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Clum, Alicia [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Cottingham, Robert W [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

359

Meetings & Workshop | VIMSS - Virtual Institute for Microbial...  

NLE Websites -- All DOE Office Websites (Extended Search)

Meetings & Workshops DOE Genomics: GTL Annual Contractor-Grantee Workshop February 11-14 North Bethesda, MD...

360

April 20, 2012 NIST “Genomes in a Bottle” Workshop ...  

Science Conference Proceedings (OSTI)

... discussed the Archon Genomics XPrize work characterizing genomes and validating pipelines, Ryan Poplin discussed Broad's pipeline to analyze ...

2012-10-04T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


361

Institutional computing (IC) information session  

SciTech Connect

The LANL Institutional Computing Program (IC) will host an information session about the current state of unclassified Institutional Computing at Los Alamos, exciting plans for the future, and the current call for proposals for science and engineering projects requiring computing. Program representatives will give short presentations and field questions about the call for proposals and future planned machines, and discuss technical support available to existing and future projects. Los Alamos has started making a serious institutional investment in open computing available to our science projects, and that investment is expected to increase even more.

Koch, Kenneth R [Los Alamos National Laboratory; Lally, Bryan R [Los Alamos National Laboratory

2011-01-19T23:59:59.000Z

362

Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum  

Science Conference Proceedings (OSTI)

Undergraduate life sciences education needs an overhaul, as clearly described in the National Research Council of the National Academies publication BIO 2010: Transforming Undergraduate Education for Future Research Biologists. Among BIO 2010's top recommendations is the need to involve students in working with real data and tools that reflect the nature of life sciences research in the 21st century. Education research studies support the importance of utilizing primary literature, designing and implementing experiments, and analyzing results in the context of a bona fide scientific question in cultivating the analytical skills necessary to become a scientist. Incorporating these basic scientific methodologies in undergraduate education leads to increased undergraduate and post-graduate retention in the sciences. Toward this end, many undergraduate teaching organizations offer training and suggestions for faculty to update and improve their teaching approaches to help students learn as scientists, through design and discovery (e.g., Council of Undergraduate Research [www.cur.org] and Project Kaleidoscope [www.pkal.org]). With the advent of genome sequencing and bioinformatics, many scientists now formulate biological questions and interpret research results in the context of genomic information. Just as the use of bioinformatic tools and databases changed the way scientists investigate problems, it must change how scientists teach to create new opportunities for students to gain experiences reflecting the influence of genomics, proteomics, and bioinformatics on modern life sciences research. Educators have responded by incorporating bioinformatics into diverse life science curricula. While these published exercises in, and guidelines for, bioinformatics curricula are helpful and inspirational, faculty new to the area of bioinformatics inevitably need training in the theoretical underpinnings of the algorithms. Moreover, effectively integrating bioinformatics into courses or independent research projects requires infrastructure for organizing and assessing student work. Here, we present a new platform for faculty to keep current with the rapidly changing field of bioinformatics, the Integrated Microbial Genomes Annotation Collaboration Toolkit (IMG-ACT). It was developed by instructors from both research-intensive and predominately undergraduate institutions in collaboration with the Department of Energy-Joint Genome Institute (DOE-JGI) as a means to innovate and update undergraduate education and faculty development. The IMG-ACT program provides a cadre of tools, including access to a clearinghouse of genome sequences, bioinformatics databases, data storage, instructor course management, and student notebooks for organizing the results of their bioinformatic investigations. In the process, IMG-ACT makes it feasible to provide undergraduate research opportunities to a greater number and diversity of students, in contrast to the traditional mentor-to-student apprenticeship model for undergraduate research, which can be too expensive and time-consuming to provide for every undergraduate. The IMG-ACT serves as the hub for the network of faculty and students that use the system for microbial genome analysis. Open access of the IMG-ACT infrastructure to participating schools ensures that all types of higher education institutions can utilize it. With the infrastructure in place, faculty can focus their efforts on the pedagogy of bioinformatics, involvement of students in research, and use of this tool for their own research agenda. What the original faculty members of the IMG-ACT development team present here is an overview of how the IMG-ACT program has affected our development in terms of teaching and research with the hopes that it will inspire more faculty to get involved.

Ditty, Jayna L.; Kvaal, Christopher A.; Goodner, Brad; Freyermuth, Sharyn K.; Bailey, Cheryl; Britton, Robert A.; Gordon, Stuart G.; Heinhorst, Sabine; Reed, Kelynne; Xu, Zhaohui; Sanders-Lorenz, Erin R.; Axen, Seth; Kim, Edwin; Johns, Mitrick; Scott, Kathleen; Kerfeld, Cheryl A.

2011-08-01T23:59:59.000Z

363

Institutional plan -- Institute of Nuclear Power Operations, 1993  

Science Conference Proceedings (OSTI)

The US nuclear electric utility industry established the Institute of Nuclear Power Operations (INPO) in 1979 to promote the highest levels of safety and reliability -- to promote excellence -- in the operation of its nuclear plants. After its formation, the Institute grew from a handful of on-loan personnel in late 1979 to an established work force of more than 400 permanent and on-loan personnel. INPO`s early years were marked by growth and evolution of its programs and organization. The Institute now focuses primarily on the effectiveness and enhancement of established programs and activities. For INPO to carry out its role, it must have the support of its members and participants and a cooperative but independent relationship with the NRC. A basis for that support and cooperation is an understanding of INPO`s role. This Institutional Plan is intended to provide that understanding by defining the Institute`s role and its major programs. This plan considers the existing and projected needs of the industry and the overall environment in which INPO and its members and participants operate.

Not Available

1993-12-31T23:59:59.000Z

364

Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity  

E-Print Network (OSTI)

Chen YJ, Chen Z, et al: Genome sequencing in microfabricatedas: Fouts et al. : Whole genome sequencing and comparativeOpen Access Whole genome sequencing and comparative genomic

2013-01-01T23:59:59.000Z

365

Home | Glenn T. Seaborg Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

T. Seaborg Institute T. Seaborg Institute Home Research Nuclear Forensics & Attribution Environmental Radiochemistry Super Heavy Element Discovery Scientific Staff Jobs: Internships & Postdocs Facilities Dr. Seaborg Publications & Links Mission Established in 1991, the LLNL branch of the Glenn T. Seaborg Institute conducts collaborative research between LLNL and the academic community in radiochemistry and nuclear forensics. The Seaborg Institute serves as a national center for the education and training of undergraduate and graduate students, postdocs and faculty in transactinium science. Seaborg Staff Contacts Annie Kersting Director kersting1@llnl.gov 925-423-3338 Ian Hutcheon Deputy Director hutcheon1@llnl.gov 925-422-4481 Dawn Shaughnessy Deputy Director shaughnessy2@llnl.gov

366

Ecologic Institute | Open Energy Information  

Open Energy Info (EERE)

Institute Institute Jump to: navigation, search Logo: Ecologic Institute Name Ecologic Institute Address Pfalzburger Strasse 43/44 Place Berlin, Germany Year founded 1995 Phone number +49 (30) 86880-0 Website http://ecologic.eu/ Coordinates 52.493143445°, 13.3453845978° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":52.493143445,"lon":13.3453845978,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

367

Hydraulic Institute Mission and Vision:  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Institute Mission and Vision: Institute Mission and Vision: Vision: To be a global authority on pumps and pumping systems. Mission: To be a value-adding resource to member companies and pump users worldwide by: * Developing and delivering comprehensive industry standards. * Expanding knowledge by providing education and tools for the effective application, testing, installation, operation and maintenance of pumps and pumping systems. * Serving as a forum for the exchange of industry information. The Hydraulic Institute is a non-profit industry (trade) association established in 1917. HI and its members are dedicated to excellence in the engineering, manufacture, and application of pumping equipment. The Institute plays a leading role in the development of pump standards in North America and worldwide. HI

368

The ecoresponsive genome of Daphnia pulex  

Science Conference Proceedings (OSTI)

This document provides supporting material related to the sequencing of the ecoresponsive genome of Daphnia pulex. This material includes information on materials and methods and supporting text, as well as supplemental figures, tables, and references. The coverage of materials and methods addresses genome sequence, assembly, and mapping to chromosomes, gene inventory, attributes of a compact genome, the origin and preservation of Daphnia pulex genes, implications of Daphnia's genome structure, evolutionary diversification of duplicated genes, functional significance of expanded gene families, and ecoresponsive genes. Supporting text covers chromosome studies, gene homology among Daphnia genomes, micro-RNA and transposable elements and the 46 Daphnia pulex opsins. 36 figures, 50 tables, 183 references.

Colbourne, John K.; Pfrender, Michael E.; Gilbert, Donald; Thomas, W. Kelley; Tucker, Abraham; Oakley, Todd H.; Tokishita, Shinichi; Aerts, Andrea; Arnold, Georg J.; Basu, Malay Kumar; Bauer, Darren J.; Caceres, Carla E.; Carmel, Liran; Casola, Claudio; Choi, Jeong-Hyeon; Detter, John C.; Dong, Qunfeng; Dusheyko, Serge; Eads, Brian D.; Frohlich, Thomas; Geiler-Samerotte, Kerry A.; Gerlach, Daniel; Hatcher, Phil; Jogdeo, Sanjuro; Krijgsveld, Jeroen; Kriventseva, Evgenia V; Kültz, Dietmar; Laforsch, Christian; Lindquist, Erika; Lopez, Jacqueline; Manak, Robert; Muller, Jean; Pangilinan, Jasmyn; Patwardhan, Rupali P.; Pitluck, Samuel; Pritham, Ellen J.; Rechtsteiner, Andreas; Rho, Mina; Rogozin, Igor B.; Sakarya, Onur; Salamov, Asaf; Schaack, Sarah; Shapiro, Harris; Shiga, Yasuhiro; Skalitzky, Courtney; Smith, Zachary; Souvorov, Alexander; Sung, Way; Tang, Zuojian; Tsuchiya, Dai; Tu, Hank; Vos, Harmjan; Wang, Mei; Wolf, Yuri I.; Yamagata, Hideo; Yamada, Takuji; Ye, Yuzhen; Shaw, Joseph R.; Andrews, Justen; Crease, Teresa J.; Tang, Haixu; Lucas, Susan M.; Robertson, Hugh M.; Bork, Peer; Koonin, Eugene V.; Zdobnov, Evgeny M.; Grigoriev, Igor V.; Lynch, Michael; Boore, Jeffrey L.

2011-02-04T23:59:59.000Z

369

Sequencing Intractable DNA to Close Microbial Genomes  

Science Conference Proceedings (OSTI)

Advancement in high throughput DNA sequencing technologies has supported a rapid proliferation of microbial genome sequencing projects, providing the genetic blueprint for for in-depth studies. Oftentimes, difficult to sequence regions in microbial genomes are ruled intractable resulting in a growing number of genomes with sequence gaps deposited in databases. A procedure was developed to sequence such difficult regions in the non-contiguous finished Desulfovibrio desulfuricans ND132 genome (6 intractable gaps) and the Desulfovibrio africanus genome (1 intractable gap). The polynucleotides surrounding each gap formed GC rich secondary structures making the regions refractory to amplification and sequencing. Strand-displacing DNA polymerases used in concert with a novel ramped PCR extension cycle supported amplification and closure of all gap regions in both genomes. These developed procedures support accurate gene annotation, and provide a step-wise method that reduces the effort required for genome finishing.

Hurt, Jr., Richard Ashley [ORNL; Brown, Steven D [ORNL; Podar, Mircea [ORNL; Palumbo, Anthony Vito [ORNL; Elias, Dwayne A [ORNL

2012-01-01T23:59:59.000Z

370

Insights from Human/Mouse genome comparisons  

SciTech Connect

Large-scale public genomic sequencing efforts have provided a wealth of vertebrate sequence data poised to provide insights into mammalian biology. These include deep genomic sequence coverage of human, mouse, rat, zebrafish, and two pufferfish (Fugu rubripes and Tetraodon nigroviridis) (Aparicio et al. 2002; Lander et al. 2001; Venter et al. 2001; Waterston et al. 2002). In addition, a high-priority has been placed on determining the genomic sequence of chimpanzee, dog, cow, frog, and chicken (Boguski 2002). While only recently available, whole genome sequence data have provided the unique opportunity to globally compare complete genome contents. Furthermore, the shared evolutionary ancestry of vertebrate species has allowed the development of comparative genomic approaches to identify ancient conserved sequences with functionality. Accordingly, this review focuses on the initial comparison of available mammalian genomes and describes various insights derived from such analysis.

Pennacchio, Len A.

2003-03-30T23:59:59.000Z

371

Integrated Genome-Based Studies of Shewanella Echophysiology  

SciTech Connect

Shewanella oneidensis MR-1 is a motile, facultative {gamma}-Proteobacterium with remarkable respiratory versatility; it can utilize a range of organic and inorganic compounds as terminal electronacceptors for anaerobic metabolism. The ability to effectively reduce nitrate, S0, polyvalent metals andradionuclides has established MR-1 as an important model dissimilatory metal-reducing microorganism for genome-based investigations of biogeochemical transformation of metals and radionuclides that are of concern to the U.S. Department of Energy (DOE) sites nationwide. Metal-reducing bacteria such as Shewanella also have a highly developed capacity for extracellular transfer of respiratory electrons to solid phase Fe and Mn oxides as well as directly to anode surfaces in microbial fuel cells. More broadly, Shewanellae are recognized free-living microorganisms and members of microbial communities involved in the decomposition of organic matter and the cycling of elements in aquatic and sedimentary systems. To function and compete in environments that are subject to spatial and temporal environmental change, Shewanella must be able to sense and respond to such changes and therefore require relatively robust sensing and regulation systems. The overall goal of this project is to apply the tools of genomics, leveraging the availability of genome sequence for 18 additional strains of Shewanella, to better understand the ecophysiology and speciation of respiratory-versatile members of this important genus. To understand these systems we propose to use genome-based approaches to investigate Shewanella as a system of integrated networks; first describing key cellular subsystems - those involved in signal transduction, regulation, and metabolism - then building towards understanding the function of whole cells and, eventually, cells within populations. As a general approach, this project will employ complimentary "top-down" - bioinformatics-based genome functional predictions, high-throughput expression analyses, and functional genomics approaches to uncover key genes as well as metabolic and regulatory networks. The "bottom-up" component employs more traditional approaches including genetics, physiology and biochemistry to test or verify predictions. This information will ultimately be linked to analyses of signal transduction and transcriptional regulatory systems and used to develop a linked model that will contribute to understanding the ecophysiology of Shewanella in redox stratified environments. A central component of this effort is the development of a data and knowledge integration environment that will allow investigators to query across the individual research domains, link to analysis applications, visualize data in a cell systems context, and produce new knowledge, while minimizing the effort, time and complexity to participating institutions.

Margrethe H. Serres

2012-06-29T23:59:59.000Z

372

NERSC and JGI Join Forces to Tackle Genomics HPC - NERSC Center News, Apr  

NLE Websites -- All DOE Office Websites (Extended Search)

NERSC and JGI Join NERSC and JGI Join Forces to Tackle Genomics HPC NERSC and JGI Join Forces to Tackle Genomics HPC April 19, 2010 A torrent of data has been flowing from the advanced sequencing platforms at the Department of Energy Joint Genome Institute (JGI), among the world's leading generators of DNA sequence information for bioenergy and environmental applications. Last year, JGI generated over one trillion nucleotide letters of genetic code for its various user programs, an eight-fold increase in productivity from 2008. This year JGI expects to sequence five-times more data than the previous year, producing more than a petabyte of data. Kathy Yelick and Eddy Rubin in front of Cray XT5 supercomputer NERSC Division Director Kathy Yelick (left) and JGI Director Eddy Rubin

373

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)  

SciTech Connect

Desulfotomaculum ruminis Campbell and Postgate 1965 is a member of the large genus Desulfotomaculum which contains 30 species and is contained in the family Peptococcaceae. This species is of interest because it represents one of the few sulfate- reducing bacteria that have been isolated from the rumen. Here we describe the features of D. ruminis together with the complete genome sequence and annotation. The 3,969,014 bp long chromosome with a total of 3,901 protein-coding and 85 RNA genes is the second completed genome sequence of a type strain of the genus Desulfotomaculum to be pub- lished, and was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program 2009.

Spring, Stefan [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Visser, Michael [Wageningen University and Research Centre, The Netherlands; Lu, Megan [Los Alamos National Laboratory (LANL); Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Larimer, Frank W [ORNL; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Schaap, Peter J [Wageningen University and Research Centre, The Netherlands; Plugge, Caroline M. [Wageningen University and Research Centre, The Netherlands; Muyzer, Gerard [Universitate Amsterdam; Kuever, Jan [Bremen Institute for Materials Testing, Bremen, Germany; Pereira, Ines A. C. [Universidade Nova de Lisboa, Oeiras, Portugal; Parshina, Sofiya N. [Russian Academy of Sciences, Moscow; Bernier-Latmani, Rizlan [Ecole Polytechnique Federale de Lausanne, Switzerland; Stams, Alfons J. M. [Wageningen University and Research Centre, The Netherlands; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

2012-01-01T23:59:59.000Z

374

Development of stable lines of transgenic zebrafish (Danio rerio) to investigate genomic instability  

NLE Websites -- All DOE Office Websites (Extended Search)

stable lines of transgenic zebrafish (Danio rerio) to stable lines of transgenic zebrafish (Danio rerio) to investigate genomic instability Lahcen Jaafar 1 , Wendy W. Kuhne 2 , Xiayang Xie 3 , Xuan Zheng 1,4 , Jeffrey S. Mumm 3 , and William S. Dynan 1 1 Institute of Molecular Medicine and Genetics, Georgia Health Sciences University, Georgia 30912, USA, 2 Savannah River National Laboratory, Aiken SC 29808, 3 Department of Cellular Biology and Anatomy, Georgia Health Sciences University, Georgia 30912, USA, 4 Genetic Diagnosis Center, Zhongnan Hospital of Wuhan University, Wuhan, China The goal of our project is to investigate low-dose radiation induced-genomic instability. We describe the development of a whole-vertebrate model bearing a reporter transgene that is designed to indicate the presence of genome instability by somatic homologous

375

DOE Solar Decathlon: Stevens Institute of Technology  

NLE Websites -- All DOE Office Websites (Extended Search)

of the Stevens Institute of Technology Solar Decathlon 2013 team) he Stevens Institute of Technology audiovisual presentation Jury Feedback Architecture Contest Market Appeal...

376

Federal Energy Management Program: Resources on Institutional...  

NLE Websites -- All DOE Office Websites (Extended Search)

Precourt Institute for Energy Efficiency Stanford Persuasive Tech Lab The McKinsey Quarterly Foundational Reading For a list of institutional change foundational...

377

Climate Change Science Institute | Clean Energy | ORNL  

NLE Websites -- All DOE Office Websites (Extended Search)

Climate Change Science Institute SHARE Climate Change Science Institute To advance understanding of the Earth system, describe the consequences of climate change, and evaluate and...

378

Dialogue 3: Strategies for Sustainable Institute Operations  

Science Conference Proceedings (OSTI)

... Dialogue 3: Strategies for Sustainable Institute Operations ... 3. What measures could assess progress of an Institute towards being self-sustainable? ...

2012-11-13T23:59:59.000Z

379

Energy Department - Electric Power Research Institute Cooperation...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Energy Department - Electric Power Research Institute Cooperation to Increase Energy Efficiency Energy Department - Electric Power Research Institute Cooperation to Increase Energy...

380

Edison Welding Institute | Open Energy Information  

Open Energy Info (EERE)

Page Edit with form History Share this page on Facebook icon Twitter icon Edison Welding Institute Jump to: navigation, search Name Edison Welding Institute Address 1250...

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


381

LANL Institutes - Information Science and Technology Center  

NLE Websites -- All DOE Office Websites (Extended Search)

NEWS LIBRARY JOBS SITE MAP Emergency Maps Organization Goals Phone Search Science > LANL Institutes > Information Science and Technology Center Institutes Home Mission...

382

Federal Correctional Institution - Phoenix, Arizona | Department...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Institution - Phoenix, Arizona October 7, 2013 - 9:54am Addthis Photo of a Parabolic-Trough Solar Water-Heating System Installed at the Federal Correctional Institution...

383

Institutional Controls in RCRA & CERCLA Response Actions  

Office of Legacy Management (LM)

Protection Agency Workgroup on Institutional Controls, Offices of General Council and Emergency and Remedial Response, March 1998. "Institutional Controls: What They Are and How...

384

Genome Improvement at JGI-HAGSC  

Science Conference Proceedings (OSTI)

Since the completion of the sequencing of the human genome, the JGI has rapidly expanded its scientific goals in several DOE mission-relevant areas. At the JGI-HAGSC, we have kept pace with this rapid expansion of projects with our focus on assessing, assembling, improving and finishing eukaryotic whole genome shotgun (WGS) projects for which the shotgun sequence is generated at the Production Genomic Facility (JGI-PGF). We follow this by combining the draft WGS with genomic resources generated at JGI-HAGSC or in collaborator laboratories (including BAC end sequences, genetic maps and FLcDNA sequences) to produce an improved draft sequence. For eukaryotic genomes important to the DOE mission, we then add further information from directed experiments to produce reference genomic sequences that are publicly available for any scientific researcher. Also, we have continued our program for producing BAC-based finished sequence, both for adding information to JGI genome projects and for small BAC-based sequencing projects proposed through any of the JGI sequencing programs. We have now built our computational expertise in WGS assembly and analysis and have moved eukaryotic genome assembly from the JGI-PGF to JGI-HAGSC. We have concentrated our assembly development work on large plant genomes and complex fungal and algal genomes.

Grimwood, Jane: Schmutz, Jeremy, J.: Myers, Richard, M.

2012-03-03T23:59:59.000Z

385

DOE Drives Big Data Push  

NLE Websites -- All DOE Office Websites (Extended Search)

2 Volume 9 Issue 2 2 Volume 9 Issue 2 From YAGS to Planetary Biology . . . . . . . . . . . . . . . 2 DOE Drives Big Data Push . . . . . . . . . . . . . . . . . . . . 3 Sweating Small Scale Genomics . . . . . . . . . . . . . . . 6 The Future of the DOE JGI . . . . . . . . . . . . . . . . . . . . 7 Save the Date for Meeting 8 . . . . . . . . . . . . . . . . . . . 8 also in this issue With a record 488 genomics researchers and bioinformaticians sitting in the Marriott Walnut Creek ballroom, New York Times science writer Carl Zimmer opened the DOE Joint Genome Institute's 7th Annual Genomics of Energy & Environment Meeting on March 20, 2012. Sharing his thoughts about being "On the Genome Beat," he informed the audience that he was worn down by seeing news about scientists successfully sequencing yet another genome sequence, and that "maybe some genomes shouldn't be written about." Zimmer's words engaged the audience in a discussion that

386

Rahus Institute | Open Energy Information  

Open Energy Info (EERE)

Rahus Institute Rahus Institute Jump to: navigation, search Name Rahus Institute Address 1535 Center Ave Place Martinez, California Zip 94553 Region Bay Area Notes Research and educational organization with a focus on resource efficiency Website http://www.californiasolarcent Coordinates 37.98404°, -122.09512° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":37.98404,"lon":-122.09512,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

387

Institutional Plan FY 2003 - 2007  

NLE Websites -- All DOE Office Websites (Extended Search)

Disclaimer Disclaimer While this document is believed to contain correct information, the United States Government nor any agency thereof makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that it would not infringe privately owned rights. Reference herein to any specific commercial product, process, or service by its trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof. INSTITUTIONAL PLAN FY 2003 - 2007 INSTITUTIONAL PLAN FY 2003 - 2007 1 Table of Contents Page 1 Introduction

388

History of the DOE Human Genome Program  

Office of Scientific and Technical Information (OSTI)

History of the DOE Human Genome Program History of the DOE Human Genome Program The following history is taken from the U.S. Department of Energy 1991-91 Human Genome Program Report (June 1992). This is an archived item. A brief history of the U.S. Department of Energy (DOE) Human Genome Program will be useful in a discussion of the objectives of the DOE program as well as those of the collaborative U.S. Human Genome Project. The Office of Health and Environmental Research (OHER) of DOE and its predecessor agencies--the Atomic Energy Commission and the Energy Research and Development Administration--have long sponsored research into genetics, both in microbial systems and in mammals, including basic studies on genome structure, replication, damage, and repair and the consequences of genetic

389

In depth comparison of an individual's DNA and its lymphoblastoid cell line using whole genome sequencing  

E-Print Network (OSTI)

Yeung G, et al: Human genome sequencing using unchained basecell line using whole genome sequencing. BMC Genomics 2012cell line using whole genome sequencing Dorothee Nickles 1 ,

2012-01-01T23:59:59.000Z

390

Complete genome sequence of Sanguibacter keddieii type strain (ST-74T)  

E-Print Network (OSTI)

60%. Strains with a genome sequencing project registered inacknowledgements. Genome sequencing Genome project historyin Table 2. Table 2. Genome sequencing project information

Ivanova, Natalia

2010-01-01T23:59:59.000Z

391

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences  

E-Print Network (OSTI)

deep transcriptome or genome sequencing, as well as experi-Three sets of whole genome shotgun sequencing were performedthroughput Whole Genome Shotgun Sequencing genomic DNA at a

2010-01-01T23:59:59.000Z

392

Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460T)  

E-Print Network (OSTI)

of the complete genome sequencing and annotation. Figure 160%. Strains with a genome sequencing project registered inexamined to date. Genome sequencing and annotation Genome

Kiss, Hajnalka

2010-01-01T23:59:59.000Z

393

Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122T)  

E-Print Network (OSTI)

of the complete genome sequencing and annotation. In60%. Strains with a genome-sequencing project regis- tered8] and the complete Genome sequencing and annotation Genome

Land, Miriam

2010-01-01T23:59:59.000Z

394

Plethodontid salamander mitochondrial genomics: A parsimony evaluation of character conflict and implications for historical biogeography  

E-Print Network (OSTI)

Mitochondrial DNA; Genomics; Biogeography; Appalachia. 1.salamander mitochondrial genomics: A parsimony evaluation of1,2 Department of Evolutionary Genomics, DOE Joint Genome

Macey, J. Robert

2005-01-01T23:59:59.000Z

395

Fueling the Future with Fungal Genomics  

E-Print Network (OSTI)

genome sequencing and bioenergy. Fungal Biology Reviews. 22:of fungal pathogens of bioenergy crops with sequenced hostand improve them to make bioenergy production efficient on

Grigoriev, Igor V.

2011-01-01T23:59:59.000Z

396

ORNL Genome Analysis Pipeline - Yeast (Saccharomyces cerevisiae...  

NLE Websites -- All DOE Office Websites (Extended Search)

Grail (Microbial Gene Prediction System Internet Link) GrailEXP Genome Analysis Pipeline DomainParser PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit)...

397

NIST and The Materials Genome Initiative  

Science Conference Proceedings (OSTI)

... the Materials Genome Ini(a(ve formed (NIST, DOE, DOD, NSF, NASA, NIH, USGS, NNSA, DARPA, NSA, OMB) 6/12: MGI White House Kickoff Event ...

2013-07-02T23:59:59.000Z

398

When is Reproducibility an Ethical Issue? Genomics ...  

Science Conference Proceedings (OSTI)

... Genomics, personalized medicine, and human error. ... Dr. Baggerly will present several case studies where simple errors may have put patients at risk ...

2013-03-20T23:59:59.000Z

399

Synthetic Genomics Inc | Open Energy Information  

Open Energy Info (EERE)

search Name Synthetic Genomics Inc. Place La Jolla, California Sector Hydro, Hydrogen, Renewable Energy Product California-based company planning to create new types of...

400

ICME Successes: From Genome to Flight  

Science Conference Proceedings (OSTI)

Past success defines a clear path forward for major enhancement of materials genomics technology. Proceedings Inclusion? Definite: A combination print-CD ...

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


401

Genomics Division: How to Contact Us  

NLE Websites -- All DOE Office Websites (Extended Search)

How to Contact Us Please contact: Mary Miller, Senior Administrator Genomics Division Lawrence Berkeley National Laboratory 1 Cyclotron Road, Mailstop 84-171 Berkeley, CA 94720...

402

DOE JGI Releases Soybean Genome Assembly  

NLE Websites -- All DOE Office Websites (Extended Search)

SoyMap team, comprising principal investigator Scott Jackson, Gary Stacey and Henry Nguyen, Jeff Doyle of Cornell University, William Beavis of the National Center for Genome...

403

Video Presentations from the 2009 DOE Joint Genome Institute User Meeting  

DOE Data Explorer (OSTI)

•\tDiversity Generating Retroelements in Bacterial, Phage, and Plasmid Elements, Jeffrey Miller (UCLA) (36:11)

404

DOE Joint Genome Institute: Getting to the Root-Unearthing the  

NLE Websites -- All DOE Office Websites (Extended Search)

August 1, 2012 August 1, 2012 Getting to the Root- Unearthing the Plant-Microbe Quid Pro Quo While the flower may attract the bee and the admiring eye of the passerby, it is the unseen complex network of life below ground where the action is. The microbial community or microbiome that inhabits the rhizosphere and endosphere -the niches immediately surrounding and inside a plant's root-facilitates the shuttling of nutrients and information into and out of the roots within the soil matrix. This commerce, by enabling the plant to adapt to its immediate environment, contributes to plant health and growth, defense against pests, management of carbon and other elements for the enrichment of the soil, and even informs the plant's ability to sequester contaminants. These underground microbial activities have not

405

DOE Joint Genome Institute: Waves of Berkeley Lab Responders Deploy Omics  

NLE Websites -- All DOE Office Websites (Extended Search)

1, 2012 1, 2012 Waves of Berkeley Lab Responders Deploy Omics to Track Deepwater Horizon Oil Spill Cleanup Microbes In the aftermath of the Deepwater Horizon oil spill in the Gulf of Mexico two years ago, various strategies were deployed to prevent 4.9 million barrels of light crude oil from fouling the waters and reaching the shores. A team of Lawrence Berkeley National Laboratory (Berkeley Lab) researchers found that nature also played a role in the dispersal process as marine microbial communities responded to the oil plume that made its way from the wellhead at a depth of 5,000 feet to the surface of the water. "There was oil on the surface and oil below, but no oil in between," said microbial ecologist Terry Hazen, former head of the Ecology Department

406

An-Institut der JAHRESBERICHT  

E-Print Network (OSTI)

Testscheibe im Temperaturmessstand. B: Temperature sensors on a test pane in the temperature measuring device-hot silicon forms while vias are being drilled into wafers with laser radiation. D: Reinigung von;JAHRESBERICHT 2008 ANNUAL REPORT Institut für Solarenergieforschung Hameln Associated with Vorbereitung von

407

An-Institut der JAHRESBERICHT  

E-Print Network (OSTI)

: Vacuum tubing collector field under radiation during certification. C: Diffusionsofen im Reinraum. C: Diffusion oven in the clean room. D: Belastungstest eines Flachbettkollektors. D: Static loading test 2007 ANNUAL REPORT Institut für Solarenergieforschung Hameln Associated with Einrichtung des

408

An-Institut der JAHRESBERICHT  

E-Print Network (OSTI)

collector on test roof II, in the foreground a wind generator. C: Lokale Nasschemie ­ Erzeugen von 2006 ANNUAL REPORT Institut für Solarenergieforschung Hameln associated with Messung der of the temperature at the surface of a vacuum collector in the radiation field of the sun simulator. #12

409

Institutions and the Volatility Curse  

E-Print Network (OSTI)

on investment and economic growth. 9 References Acemoglu, D., S. Johnson, and J. A. Robinson (2005). Institutions as a Fundamental Cause of Long-Run Growth. In P. Aghion and S. Durlauf (Eds.), Handbook of Economic Growth, Volume 1, pp. 385?472. Amsterdam...

Leong, Weishu; Mohaddes, Kamiar

2011-07-10T23:59:59.000Z

410

Durham Energy Institute 107 Researchers  

E-Print Network (OSTI)

Challenges in Energy Networks Project (Total £3.3M) Supergen wind £4.85M ­ working on reliability FlexNet (flexible networks) 2003- 2011. Wind and energy markets, power system dynamics Dong EnergyDurham Energy Institute 107 Researchers Focus on society and key technologies World leading

Wirosoetisno, Djoko

411

Name Institution Anderson, Jeff NCAR  

E-Print Network (OSTI)

, Jeff LASP Gettelman, Andrew NCAR Ghan, Steve PNNL Guba, Oksana SNL Guo, Huan UCAR/GFDL Gutowski Pacific Northwest National Lab Lu, Gang NCAR Lu, Xian U. Illinois at Urbana-Champaign Ma, Po-Lun PNNL, Phil PNNL Richmond, Art NCAR Rothstein, Mathew NCAR Seland, Ã?yvind Norwegian Meteorological Institute

412

Breakthrough Institute | Open Energy Information  

Open Energy Info (EERE)

Breakthrough Institute Breakthrough Institute Jump to: navigation, search Logo: Breakthrough Institute Name Breakthrough Institute Address 436 14th Street, Suite 820 Place Oakland, California Zip 94612 Region Bay Area Number of employees 1-10 Year founded 2003 Phone number 510-550-8800 x300 Website http://www.thebreakthrough.org Coordinates 37.80428°, -122.270794° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":37.80428,"lon":-122.270794,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

413

Institute  

E-Print Network (OSTI)

Monitoring of people and workers exposure to the electric, magnetic and electromagnetic fields in an Italian national cancer

Anna Maria; Di Nallo; Lidia Strigari; Claudia Giliberti; Angelico Bedini; Raffaele Palomba; Marcello Benassi

2008-01-01T23:59:59.000Z

414

Institution  

E-Print Network (OSTI)

Equational reasoning and combination methods: from programs to proofs 20 years of research in automated deduction, equational reasoning and combination

Christophe Ringeissen; Poincaré Nancy; Christophe Ringeissen

2009-01-01T23:59:59.000Z

415

Federal Energy Management Program: Infrastructure Institutional Change  

NLE Websites -- All DOE Office Websites (Extended Search)

Infrastructure Infrastructure Institutional Change Principle to someone by E-mail Share Federal Energy Management Program: Infrastructure Institutional Change Principle on Facebook Tweet about Federal Energy Management Program: Infrastructure Institutional Change Principle on Twitter Bookmark Federal Energy Management Program: Infrastructure Institutional Change Principle on Google Bookmark Federal Energy Management Program: Infrastructure Institutional Change Principle on Delicious Rank Federal Energy Management Program: Infrastructure Institutional Change Principle on Digg Find More places to share Federal Energy Management Program: Infrastructure Institutional Change Principle on AddThis.com... Sustainable Buildings & Campuses Operations & Maintenance Greenhouse Gases

416

Federal Energy Management Program: Commitment Institutional Change  

NLE Websites -- All DOE Office Websites (Extended Search)

Commitment Commitment Institutional Change Principle to someone by E-mail Share Federal Energy Management Program: Commitment Institutional Change Principle on Facebook Tweet about Federal Energy Management Program: Commitment Institutional Change Principle on Twitter Bookmark Federal Energy Management Program: Commitment Institutional Change Principle on Google Bookmark Federal Energy Management Program: Commitment Institutional Change Principle on Delicious Rank Federal Energy Management Program: Commitment Institutional Change Principle on Digg Find More places to share Federal Energy Management Program: Commitment Institutional Change Principle on AddThis.com... Sustainable Buildings & Campuses Operations & Maintenance Greenhouse Gases Water Efficiency Data Center Energy Efficiency

417

Community Association Institute | Open Energy Information  

Open Energy Info (EERE)

Institute Institute Jump to: navigation, search Name Community Association Institute Place Falls Church, VA Website http://www.caionline.org/about References Community Associations Institute Website[1] Information About Partnership with NREL Partnership with NREL Yes Partnership Type Test & Evaluation Partner Partnering Center within NREL Electricity Resources & Building Systems Integration LinkedIn Connections CrunchBase Profile No CrunchBase profile. Create one now! Community Association Institute is a company located in Falls Church, VA. References ↑ "Community Associations Institute Website" Retrieved from "http://en.openei.org/w/index.php?title=Community_Association_Institute&oldid=381604" Categories: Clean Energy Organizations

418

Classification Training Institute Catalog | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Services » Classification » Classification Training Institute » Services » Classification » Classification Training Institute » Classification Training Institute Catalog Classification Training Institute Catalog Classification Training Institute (CTI) Catalog Training & Reference Materials Online Classified or Controlled Information Mini-Lessons Classified Information Training Unclassified Controlled Nuclear Information Training Official Use Only Training OpenNet Training Training For Other Agency Personnel Classification Training Institute Catalog Enforcement Guidance Oversight Reporting Security Classification Classification Training Institute Official Use Only Information Unclassified Controlled Nuclear Information (UCNI) Statutes, Regulations, & Directives Nuclear Safety Assistance Training Outreach & Collaboration

419

Federal Energy Management Program: Leadership Institutional Change  

NLE Websites -- All DOE Office Websites (Extended Search)

Leadership Leadership Institutional Change Principle to someone by E-mail Share Federal Energy Management Program: Leadership Institutional Change Principle on Facebook Tweet about Federal Energy Management Program: Leadership Institutional Change Principle on Twitter Bookmark Federal Energy Management Program: Leadership Institutional Change Principle on Google Bookmark Federal Energy Management Program: Leadership Institutional Change Principle on Delicious Rank Federal Energy Management Program: Leadership Institutional Change Principle on Digg Find More places to share Federal Energy Management Program: Leadership Institutional Change Principle on AddThis.com... Sustainable Buildings & Campuses Operations & Maintenance Greenhouse Gases Water Efficiency Data Center Energy Efficiency

420

International Masonry Institute | Open Energy Information  

Open Energy Info (EERE)

Masonry Institute Masonry Institute Jump to: navigation, search Name International Masonry Institute Place Annapolis, MD Website http://www.internationalmasonr References International Masonry Institute[1] Information About Partnership with NREL Partnership with NREL Yes Partnership Type Test & Evaluation Partner Partnering Center within NREL Electricity Resources & Building Systems Integration LinkedIn Connections CrunchBase Profile No CrunchBase profile. Create one now! International Masonry Institute is a company located in Annapolis, MD. References ↑ "International Masonry Institute" Retrieved from "http://en.openei.org/w/index.php?title=International_Masonry_Institute&oldid=379413" Categories: Clean Energy Organizations Companies Organizations

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


421

Federal Energy Management Program: Multiple Motivations Institutional  

NLE Websites -- All DOE Office Websites (Extended Search)

Multiple Multiple Motivations Institutional Change Principle to someone by E-mail Share Federal Energy Management Program: Multiple Motivations Institutional Change Principle on Facebook Tweet about Federal Energy Management Program: Multiple Motivations Institutional Change Principle on Twitter Bookmark Federal Energy Management Program: Multiple Motivations Institutional Change Principle on Google Bookmark Federal Energy Management Program: Multiple Motivations Institutional Change Principle on Delicious Rank Federal Energy Management Program: Multiple Motivations Institutional Change Principle on Digg Find More places to share Federal Energy Management Program: Multiple Motivations Institutional Change Principle on AddThis.com... Sustainable Buildings & Campuses

422

Utilization Technology Institute | Open Energy Information  

Open Energy Info (EERE)

Institute Institute Jump to: navigation, search Name Utilization Technology Institute Place Des Plaines, IL References Utilization Technology Institute[1] Information About Partnership with NREL Partnership with NREL Yes Partnership Type Test & Evaluation Partner Partnering Center within NREL Electricity Resources & Building Systems Integration LinkedIn Connections CrunchBase Profile No CrunchBase profile. Create one now! Utilization Technology Institute is a company located in Des Plaines, IL. References ↑ "Utilization Technology Institute" Retrieved from "http://en.openei.org/w/index.php?title=Utilization_Technology_Institute&oldid=381738" Categories: Clean Energy Organizations Companies Organizations What links here Related changes

423

Federal Energy Management Program: Determine Institutional Change  

NLE Websites -- All DOE Office Websites (Extended Search)

Determine Determine Institutional Change Sustainability Goals to someone by E-mail Share Federal Energy Management Program: Determine Institutional Change Sustainability Goals on Facebook Tweet about Federal Energy Management Program: Determine Institutional Change Sustainability Goals on Twitter Bookmark Federal Energy Management Program: Determine Institutional Change Sustainability Goals on Google Bookmark Federal Energy Management Program: Determine Institutional Change Sustainability Goals on Delicious Rank Federal Energy Management Program: Determine Institutional Change Sustainability Goals on Digg Find More places to share Federal Energy Management Program: Determine Institutional Change Sustainability Goals on AddThis.com... Sustainable Buildings & Campuses

424

Federal Energy Management Program: Federal Correctional Institution -  

NLE Websites -- All DOE Office Websites (Extended Search)

Federal Federal Correctional Institution - Phoenix, Arizona to someone by E-mail Share Federal Energy Management Program: Federal Correctional Institution - Phoenix, Arizona on Facebook Tweet about Federal Energy Management Program: Federal Correctional Institution - Phoenix, Arizona on Twitter Bookmark Federal Energy Management Program: Federal Correctional Institution - Phoenix, Arizona on Google Bookmark Federal Energy Management Program: Federal Correctional Institution - Phoenix, Arizona on Delicious Rank Federal Energy Management Program: Federal Correctional Institution - Phoenix, Arizona on Digg Find More places to share Federal Energy Management Program: Federal Correctional Institution - Phoenix, Arizona on AddThis.com... Energy-Efficient Products Technology Deployment

425

JGI User Meeting 2007  

NLE Websites -- All DOE Office Websites (Extended Search)

Second Annual Second Annual DOE Joint Genome Institute User Meeting Marriott Hotel Walnut Creek, California March 28-30, 2007 The U.S. Department of Energy Joint Genome Institute (JGI) welcomed its users and collaborators, as well as prospective new users, to the second annual JGI User Meeting. This international gathering of researchers with an interest in sequence-based science offered three days of user presentations, tours, workshops, and poster sessions. This was a unique opportunity to meet fellow users and JGI staff. Sessions and posters in the fields of microbial genomics, microbial communities, eukaryotic genomics, and genome technologies were presented. ©2006-2007, The Regents of the University of California. Last updated May 9, 2007. Disclaimer | Webmaster Agenda

426

Institution Name Institution Name Address Place Zip Notes Website Region  

Open Energy Info (EERE)

Aviation Fuels Development Center Baylor Aviation Fuels Development Center Baylor University Renewable Aviation Fuels Development Center One Bear Place Waco Texas http www baylor edu bias index php id Texas Area CSU Institute for the Built Environment CSU Institute for the Built Environment Oval Drive Fort Collins Colorado http www ibe colostate edu Rockies Area Caltech Center for Sustainable Energy Research Caltech Center for Sustainable Energy Research East California Boulvard Pasadena California http www ccser caltech edu Southern CA Area Calverton Business Incubator Calverton Business Incubator Middle Country Rd Calverton New York http www sunysb edu research calverton Northeast NY NJ CT PA Area Colorado Renewable Energy Collaboratory Colorado Renewable Energy Collaboratory th Street Suite Denver Colorado http www coloradocollaboratory org

427

Institution Name Institution Name Address Place Zip Notes Website Region  

Open Energy Info (EERE)

McClellan Technology Incubator Clean Start McClellan Technology McClellan Technology Incubator Clean Start McClellan Technology Incubator Bailey Loop McClellan California http www sarta org go cs Bay Area Corvalence Corvalence Jackson St San Francisco California Bay Area Energy BioSciences Institute Energy BioSciences Institute Berkeley California http www energybiosciencesinstitute org Bay Area Environmental Business Cluster Environmental Business Cluster North First Street Third Floor San Jose California http www environmentalcluster org Bay Area Global Climate and Energy Project Global Climate and Energy Project Via Ortega Suite Stanford California http gcep stanford edu Bay Area Google org Google org Amphitheatre Parkway Mountain View California http www google org Bay Area Lawrence Berkeley National Laboratory LBNL Lawrence Berkeley National

428

INTEGRATED GENOME-BASED STUDIES OF SHEWANELLA ECOPHYSIOLOGY  

SciTech Connect

This project had as its goals the understanding of the ecophysiology of the genus Shewanella using various genomics approaches. As opposed to other programs involving Shewanella, this one branched out into the various areas in which Shewanella cells are active, and included both basic and applied studies. All of the work was, to some extent, related to the ability of the bacteria to accomplish electron exchange between the cell and solid state electron acceptors and/or electron donors, a process we call Extracellular Electron Transport, or EET. The major accomplishments related to several different areas: Basic Science Studies: 1. Genetics and genomics of nitrate reduction, resulting in elucidation of atypical nitrate reduction systems in Shewanella oneidensis (MR-1)[2]. 2. Influence of bacterial strain and growth conditions on iron reduction, showing that rates of reduction, extents of reduction, and the formation of secondary minerals were different for different strains of Shewanella [3,4,9]. 3. Comparative genomics as a tool for comparing metabolic capacities of different Shewanella strains, and for predicting growth and metabolism [6,10,15]. In these studies, collaboration with ORNL, PNNL, and 4. Basic studies of electron transport in strain MR-1, both to poised electrodes, and via conductive nanowires [12,13]. This included the first accurate measurements of electrical energy generation by a single cell during electrode growth [12], and the demonstration of electrical conductivity along the length of bacterial nanowires [13]. 5. Impact of surface charge and electron flow on cell movement, cell attachment, cell growth, and biofilm formation [7.18]. The demonstration that interaction with solid state electron acceptors resulted in increased motility [7] led to the description of a phenomenon called electrokinesis. The importance of this for biofilm formation and for electron flow was hypothesized by Nealson & Finkel [18], and is now under study in several laboratories. Applications: 1. Corrosion: Electron flow is often part of the corrosive process, and several studies were done in concert with this proposal with regard to the ability of EET-capable bacteria to enhance, inhibit, or detect corrosion. These included using EET-capable bacteria to detect corrosion in its earliest stages [5], to use corrosion-causing bacteria for the study of the microbe/mineral interface during corrosion [1], and to study the groups of microbes involved with corrosion of natural systems [19]. 2. Bioenergy and microbial fuel cells: The production of electricity by Shewanella was shown early in this program (several years ago) to be dependent on the genes for extracellular electron transport (EET), and applied work involved the testing of various strains and conditions for the optimization of current production by the shewanellae [11,14,16]. 3. Identification of shewanellae strains: Based on similarities seen in genomic comparisons, a rapid method was employed for distinguishing between shewanellae strains [17]. Interactions with other laboratories: This grant was an extension of a grant involving the so-called ?Shewanella Federation?, and as such, a number of our publications were joint with other members of this group. The groups included: 1. Pacific Northwest Laboratories ? 2. Oak Ridge National Labs 3. Michigan State University 4. University of Oklahoma 5. Naval Research Laboratory, Washington DC 6. Burnham Medical Research Institute, San Diego 7. J. Craig Venter Institute, San Diego Education: Graduate Students: Michael Waters, Ph.D. ? at NIST, Washington D.C. Lewis Hsu, Ph.D. ? at NRL, San Diego Howard Harris, Ph.D. ? Postdoc at University, France Everett Salas, Ph.D. ? Scientist at Chevron McLean, Jeffrey, Ph.D. ? Scientist at J. Craig Venter Institute McCrow, John, Ph.D. ? Scientist at J. Craig Venter Institute Postdocs: Mohamed El-Naggar ? Professor of Physics, USC Jinjun Kan ? Senior Researcher at Undergraduatges: During this year, we had three undergraduate researchers in the lab, each working on an aspect of this work, and each

NEALSON, KENNETH H.

2013-10-15T23:59:59.000Z

429

VIMSS - Virtual Institute for Microbial Stress and Survival  

NLE Websites -- All DOE Office Websites (Extended Search)

featuredproject ESPP222 Environmental Stress Pathway Project (ESPP2) formerly known as Rapid Deduction of Stress Response Pathways in Metal/Radionuclide Reducing Bacteria Adam Arkin, co-Principal Investigator (LBNL, Physical Biosciences Division) and Terry Hazen, co-Principal Investigator (LBNL, Earth Sciences Division) ESPP2 is developing computational models that describe and predict the behavior of gene regulatory networks in microbes in response to the environmental conditions found in DOE waste sites. The research takes place within the Virtual Institute for Microbial Stress and Survival (VIMSS). >> More about ESPP2 >> View all projects featured project desufovibrio microbesonline.com MicrobesOnline is designed specifically to facilitate comparative studies on prokaryotic genomes.

430

ComBo : a visualization tool for comparative genomic data  

E-Print Network (OSTI)

Propelled by advances in sequencing technology, the advent of the genomic era brings the challenge of managing and interpreting massive amount of genomic data. A number of single-genome browsers have been developed for ...

Yu, Tamara H. (Tamara Hui)

2004-01-01T23:59:59.000Z

431

Evolutionary Genomics of Life in (and from) the Sea  

E-Print Network (OSTI)

291: 1304-1351. Table 1. Genomics information on the webLBNL-59356 Evolutionary Genomics of Life in (and from) thean engine for comparative genomics. The six largest centers

Boore, Jeffrey L.

2009-01-01T23:59:59.000Z

432

Structural Genomics of Minimal Organisms: Pipeline and Results  

E-Print Network (OSTI)

of recombinant proteins. J. Struct. Funct. Genomics 5:69-74.proteins. J. Struct. Funct. Genomics 5:69-74. Oganesyan,Structural Genomics of Minimal Organisms: Pipeline and

Kim, Sung-Hou

2008-01-01T23:59:59.000Z

433

The Impact of Structural Genomics: Expectations and Outcomes  

E-Print Network (OSTI)

Choi et al. , J Struct Funct Genomics 4, 31-4 (2003). H. M.Center for Structural Genomics, sequence families of unknownMCSG) Northeast Structural Genomics Consortium, Novel folds

Chandonia, John-Marc; Brenner, Steven E.

2005-01-01T23:59:59.000Z

434

Comparative genomics reveals evidence of marine adaptation in Salinispora species.  

E-Print Network (OSTI)

Orcutt B, et al: Ecological genomics of marine roseobacters.1037-1042. Penn and Jensen BMC Genomics 2012, 13:86 http://and Jensen: Comparative genomics reveals evidence of marine

Penn, Kevin; Jensen, Paul R

2012-01-01T23:59:59.000Z

435

Target Selection and Deselection at the Berkeley Structural Genomics Center  

E-Print Network (OSTI)

gene-set concept. Annu Rev Genomics Hum Genet 2000;1:99-116.SE. A tour of structural genomics. Nat Rev Genet 2001;2(10):M, Wang LK. Structural genomics: a pipeline for providing

Chandonia, John-Marc; Kim, Sung-Hou; Brenner, Steven E.

2005-01-01T23:59:59.000Z

436

Phytozome: A Comparative Platform for Green Plant Genomics  

E-Print Network (OSTI)

a growing plant comparative genomics resource. Nucleic AcidsL.A. (2011) The Sol Genomics Network (solgenomics.net):for comparative plant genomics. Nucleic Acids Res, 36, D959-

Goodstein, David M.

2012-01-01T23:59:59.000Z

437

UV Decontamination of MDA Reagents for Single Cell Genomics  

E-Print Network (OSTI)

Reagents for Single Cell Genomics Janey Lee 1* , Damon TigheReagents for Single Cell Genomics Janey Lee 1 , Damon TigheAbstract Single cell genomics, the amplification and

Lee, Janey

2011-01-01T23:59:59.000Z

438

Uses of antimicrobial genes from microbial genome  

DOE Patents (OSTI)

We describe a method for mining microbial genomes to discover antimicrobial genes and proteins having broad spectrum of activity. Also described are antimicrobial genes and their expression products from various microbial genomes that were found using this method. The products of such genes can be used as antimicrobial agents or as tools for molecular biology.

Sorek, Rotem; Rubin, Edward M.

2013-08-20T23:59:59.000Z

439

Millennium Institute | Open Energy Information  

Open Energy Info (EERE)

Name Millennium Institute Name Millennium Institute Address 2111 Wilson Blvd. Suite 700 Place Arlington, VA Zip 22201 Region Northeast - NY NJ CT PA Area Phone number (703) 351 5081 Website http://www.millenniuminstitute Coordinates 38.891701°, -77.084673° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":38.891701,"lon":-77.084673,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

440

Institutions Related to Berkeley Lab  

NLE Websites -- All DOE Office Websites (Extended Search)

Institutions Related to Berkeley Laboratory Institutions Related to Berkeley Laboratory DOE logo Office of Science logo UC seal Berkeley Lab logo University of California Department of Energy (DOE) and DOE National Laboratories NERSC (National Energy Research Scientific Computing Center) ESnet Stanford Linear Accelerator Center (SLAC) Lawrence Livermore National Laboratory Los Alamos National Laboratory High Energy Physics Information Center U.S. Government University of California UC Berkeley UC Berkeley colleges, schools, and teaching units The Daily Cal independent student newspaper at UC Berkeley. University of California campuses and labs UC Office of the President UC National Laboratories provides news and information on UC's management of three DOE laboratories -- Lawrence Berkeley National Laboratory, Lawrence Livermore National Laboratory, and Los Alamos National

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


441

Joint Institute for High Temperatures  

National Nuclear Security Administration (NNSA)

Joint Institute for High Temperatures of Russian Academy of Sciences Moscow Institute of Physics and Technology Extended title Extended title Excited state of warm dense matter or Exotic state of warm dense matter or Novel form of warm dense matter or New form of plasma Three sources of generation similarity: solid state density, two temperatures: electron temperature about tens eV, cold ions keep original crystallographic positions, but electron band structure and phonon dispersion are changed, transient but steady (quasi-stationary for a short time) state of non-equilibrium, uniform plasmas (no reference to non-ideality, both strongly and weakly coupled plasmas can be formed) spectral line spectra are emitted by ion cores embedded in plasma environment which influences the spectra strongly,

442

JGI Case Study (NERSC-BER Workshop, Sep 11 2012).pptx  

NLE Websites -- All DOE Office Websites (Extended Search)

Computing Requirements Shane Canon, Rob Egan, David Goodstein Victor M Markowitz NERSC BER Requirements for 2017 September 11-12, 2012 Established in 1999, located in Walnut Creek Supported by the DOE Office of Science. Budget of ~70 Million/ yr ~ 300 Employees Mission User facility for large scale genomics to enable bioenergy & environmental research DOE Joint Genome Institute (JGI) JGI Programs Plants Fungi Microbes Metagenomes Bioenergy Carbon Cycling Biogeochemistry Mission Areas Energy and Environmental Science Experimental Data Generation Data Interpretation User Interactions Sequencing Data Distribution Assembly of Sequence Data 4 30 Tb Sequence data Science publications Annotated Datasets: Genes Assembled Datasets Integrated Datasets:

443

Whole Genome Duplications, Multi-Break Rearrangements, and Genome Halving Theorem  

E-Print Network (OSTI)

The Genome Halving Problem, motivated by the whole genome duplication events in molecular evolution, was solved by El-Mabrouk and Sankoff. The El-Mabrouk– Sankoff algorithm is rather complex inspiring a quest for a simpler solution. An alternative approach to Genome Halving Problem based on the notion of the contracted breakpoint graph was recently proposed in [2]. This new technique reveals that while the El-Mabrouk–Sankoff result is correct in most cases, it does not hold in the case of unichromosomal genomes. This raises a problem of correcting El-Mabrouk–Sankoff analysis and devising an algorithm that deals adequately with all genomes. In this paper we efficiently classify all genomes into two classes and show that while the El-Mabrouk–Sankoff theorem holds for the first class, it is incorrect for the second class. The crux of our analysis is a new combinatorial invariant defined on duplicated permutations. Using this invariant we were able to come up with a full proof of the Genome Halving theorem and a polynomial algorithm for Genome Halving Problem (for unichromosomal genomes). We also give the first short proof of the original El-Mabrouk–Sankoff result for multichromosomal genomes. Finally, we discuss a generalization of Genome Halving Problem for a more general set of rearrangement operations (including transpositions) and propose an efficient algorithm for solving this problem. 1

Max A. Alekseyev; Pavel A. Pevzner

2007-01-01T23:59:59.000Z

444

Data Management for High-Throughput Genomics  

E-Print Network (OSTI)

Today's sequencing technology allows sequencing an individual genome within a few weeks for a fraction of the costs of the original Human Genome project. Genomics labs are faced with dozens of TB of data per week that have to be automatically processed and made available to scientists for further analysis. This paper explores the potential and the limitations of using relational database systems as the data processing platform for high-throughput genomics. In particular, we are interested in the storage management for high-throughput sequence data and in leveraging SQL and user-defined functions for data analysis inside a database system. We give an overview of a database design for high-throughput genomics, how we used a SQL Server database in some unconventional ways to prototype this scenario, and we will discuss some initial findings about the scalability and performance of such a more database-centric approach.

Roehm, Uwe

2009-01-01T23:59:59.000Z

445

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change  

Science Conference Proceedings (OSTI)

In our manuscript, we present a high-quality genome sequence of the Arabidopsis thaliana relative, Arabidopsis lyrata, produced by dideoxy sequencing. We have performed the usual types of genome analysis (gene annotation, dN/dS studies etc. etc.), but this is relegated to the Supporting Information. Instead, we focus on what was a major motivation for sequencing this genome, namely to understand how A. thaliana lost half its genome in a few million years and lived to tell the tale. The rather surprising conclusion is that there is not a single genomic feature that accounts for the reduced genome, but that every aspect centromeres, intergenic regions, transposable elements, gene family number is affected through hundreds of thousands of cuts. This strongly suggests that overall genome size in itself is what has been under selection, a suggestion that is strongly supported by our demonstration (using population genetics data from A. thaliana) that new deletions seem to be driven to fixation.

Hu, Tina T.; Pattyn, Pedro; Bakker, Erica G.; Cao, Jun; Cheng, Jan-Fang; Clark, Richard M.; Fahlgren, Noah; Fawcett, Jeffrey A.; Grimwood, Jane; Gundlach, Heidrun; Haberer, Georg; Hollister, Jesse D.; Ossowski, Stephan; Ottilar, Robert P.; Salamov, Asaf A.; Schneeberger, Korbinian; Spannagl, Manuel; Wang, Xi; Yang, Liang; Nasrallah, Mikhail E.; Bergelson, Joy; Carrington, James C.; Gaut, Brandon S.; Schmutz, Jeremy; Mayer, Klaus F. X.; Van de Peer, Yves; Grigoriev, Igor V.; Nordborg, Magnus; Weigel, Detlef; Guo, Ya-Long

2011-04-29T23:59:59.000Z

446

Upgraded IMG Data Management System Released by DOE JGI to Eager User  

NLE Websites -- All DOE Office Websites (Extended Search)

4, 2007 4, 2007 Upgraded Integrated Microbial Genomes (IMG) Data Management System Released by DOE JGI to Eager User Community WALNUT CREEK, CA--A powerful set of computational tools established to ease the visualization and exploration of genomes flooding the public domain is now available in IMG Version 2.3--the Integrated Microbial Genomes (IMG) data management system hosted by the U.S. Department of Energy Joint Genome Institute (DOE JGI). The content of IMG 2.3, upgraded with new microbial genomes from the Version 23 release of the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) collection, now includes fungi, protists (eukaryotic unicellular organisms), and plant genomes to enhance the breadth of comparative analysis. A new addition of particular interest to

447

NREL: Energy Executive Leadership Academy - Leadership Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Institute Institute Participants in NREL's Executive Energy Leadership Institute learn about renewable energy and energy efficiency from the experts through this accelerated training program typically conducted over a three-day period. Course content includes briefings by technology experts on renewable energy and energy efficiency technologies, market assessments, and analytical and financial tools, as well as associated technology tours. Tours of NREL research facilities are a key component of the Institute. All sessions originate and end at NREL's campus in Golden, Colorado. For additional details, including a customized Leadership Institute in your region, see the sample syllabus or contact Energy Execs. Qualified individuals are invited to apply for the upcoming 2014 Institute.

448

Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)  

SciTech Connect

Chromohalobacter salexigens is one of nine currently known species of the genus Chromoha- lobacter in the family Halomonadaceae. It is the most halotolerant of the so-called mod- erately halophilic bacteria currently known and, due to its strong euryhaline phenotype, it is an established model organism for prokaryotic osmoadaptation. C. salexigens strain 1H11T and Halomonas elongata are the first and the second members of the family Halomonada- ceae with a completely sequenced genome. The 3,696,649 bp long chromosome with a total of 3,319 protein-coding and 93 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2004.

Copeland, A [U.S. Department of Energy, Joint Genome Institute; O'Connor, Kathleen [Purdue University; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Berry, Kerrie W. [United States Department of Energy Joint Genome Institute; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Vargas, Carmen [University of Seville; Nieto, Joaquin J. [University of Seville; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Csonka, Laszlo N. [Purdue University; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

449

Plant Genomics Vol 3.pmd  

NLE Websites -- All DOE Office Websites (Extended Search)

Populus Populus Genome Initiative Stephen DiFazio Department of Biology, West Virginia University, Morgantown, West Virginia 26508-6057 USA Email: spdifazio@mail.wvu.edu 8 1 INTRODUCTION 1.1 Background on Populus Biology The genus Populus consists of about 29 species organized into six major sections that occur primarily in the Northern Hemisphere (Eckenwalder 1996). Species from the different sections of the genus have diverse ecological characteristics. Two of the most economically important sections (Aigeiros and Tacamahaca) contain species collectively known as cottonwoods. These occur mostly in riparian zones and are characterized by primarily ruderal life history, dominating early successional stages and thriving on flood-mediated disturbance (Braatne et al. 1996; Karrenberg et al. 2002). The other major section of the genus (section Populus,

450

JGI - Sequencing for the DOE Genomics: GTL Program  

NLE Websites -- All DOE Office Websites (Extended Search)

Educational Resources MyJGI: Information for Collaborators Sequencing for the DOE Genomics: GTL Program For status information, see the Genome Projects section. For more...

451

The Microbial Genomics and Metagenomics (MGM) five-day  

NLE Websites -- All DOE Office Websites (Extended Search)

Microbial Genomics and Metagenomics (MGM) five-day workshop (www.jgi.doe.gov meetingsmgm) provides strong and solid training in microbial genomic and metagenomic analysis and...

452

Genome resequencing in Populus: Revealing large-scale genome variation and implications on specialized-trait genomics  

Science Conference Proceedings (OSTI)

To date, Populus ranks among a few plant species with a complete genome sequence and other highly developed genomic resources. With the first genome sequence among all tree species, Populus has been adopted as a suitable model organism for genomic studies in trees. However, far from being just a model species, Populus is a key renewable economic resource that plays a significant role in providing raw materials for the biofuel and pulp and paper industries. Therefore, aside from leading frontiers of basic tree molecular biology and ecological research, Populus leads frontiers in addressing global economic challenges related to fuel and fiber production. The latter fact suggests that research aimed at improving quality and quantity of Populus as a raw material will likely drive the pursuit of more targeted and deeper research in order to unlock the economic potential tied in molecular biology processes that drive this tree species. Advances in genome sequence-driven technologies, such as resequencing individual genotypes, which in turn facilitates large scale SNP discovery and identification of large scale polymorphisms are key determinants of future success in these initiatives. In this treatise we discuss implications of genome sequence-enable technologies on Populus genomic and genetic studies of complex and specialized-traits.

Muchero, Wellington [ORNL; Labbe, Jessy L [ORNL; Priya, Ranjan [University of Tennessee, Knoxville (UTK); DiFazio, Steven P [West Virginia University, Morgantown; Tuskan, Gerald A [ORNL

2013-01-01T23:59:59.000Z

453

From ideals to institutions : institutional entrepreneurship in Mexican small business finance  

E-Print Network (OSTI)

Through a combination of in-depth research and unique loan-level data, this dissertation explores the mechanisms of intentional institutional change. It argues that current accounts of institutions and institutional change ...

Canales, Rodrigo (Rodrigo J.)

2008-01-01T23:59:59.000Z

454

Australian Solar Institute | Open Energy Information  

Open Energy Info (EERE)

Solar Institute Solar Institute Jump to: navigation, search Name Australian Solar Institute Place Newcastle, New South Wales, Australia Zip 2300 Sector Solar Product New South Wales-based institute providing support for the Australian solar community, helping to retain Australian solar expertise and develop the next generation of Australian solar researchers. References Australian Solar Institute[1] LinkedIn Connections CrunchBase Profile No CrunchBase profile. Create one now! This article is a stub. You can help OpenEI by expanding it. Australian Solar Institute is a company located in Newcastle, New South Wales, Australia . References ↑ "Australian Solar Institute" Retrieved from "http://en.openei.org/w/index.php?title=Australian_Solar_Institute&oldid=342442

455

Argonne Chemical Sciences & Engineering - Institute for Atom...  

NLE Websites -- All DOE Office Websites (Extended Search)

Catalysis & Energy Conversion Electrochemical Energy Storage Nuclear & Environmental Processes National Security Institute for Atom-Efficient Chemical Transformations Center for...

456

Institute of Computer Science Computational experience with ...  

E-Print Network (OSTI)

Institute of Computer Science. Academy of Sciences of the Czech Republic. Computational experience with modified. conjugate gradient methods for.

457

INSTITUTE FOR CYBER SECURITY Security Models  

E-Print Network (OSTI)

INSTITUTE FOR CYBER SECURITY 1 Security Models: Past, Present and Future Prof. Ravi Sandhu Executive Director and Endowed Chair Institute for Cyber Security University of Texas at San Antonio July 2010 ravi.sandhu@utsa.edu www.profsandhu.com © Ravi Sandhu #12;INSTITUTE FOR CYBER SECURITY 2 THE BIG

Sandhu, Ravi

458

INSTITUTE FOR CYBER SECURITY Security Models  

E-Print Network (OSTI)

INSTITUTE FOR CYBER SECURITY 1 Security Models: Past, Present and Future Prof. Ravi Sandhu Executive Director and Endowed Chair Institute for Cyber Security University of Texas at San Antonio July 2009 ravi.sandhu@utsa.edu www.profsandhu.com © Ravi Sandhu #12;INSTITUTE FOR CYBER SECURITY 2 THE BIG

Sandhu, Ravi

459

SOUTHWEST RESEARCH INSTITUTE San Antonio, Texas  

E-Print Network (OSTI)

SOUTHWEST RESEARCH INSTITUTE San Antonio, Texas July 2010 ii #12;SOUTHWEST RESEARCH INSTITUTE San Antonio, Texas July 2010 iii Abstracts of Test Procedures FUELS FUEL ADDITIVES & FUEL ECONOMY Performed by The Office of Automotive Engineering Southwest Research Institute® San Antonio, Texas July 2010 #12;SOUTHWEST

Chapman, Clark R.

460

The Combustion Institute 5001 Baum Boulevard  

E-Print Network (OSTI)

The Combustion Institute 5001 Baum Boulevard Pittsburgh, Pennsylvania, USA 15213-1851 CENTRAL STATES SECTION OF THE COMBUSTION INSTITUTE CALL FOR PAPERS TECHNICAL MEETING - SPRING 2002 COMBUSTION 7-9, 2002 #12;CENTRAL STATES SECTION OF THE COMBUSTION INSTITUTE www.cssci.org CALL FOR PAPERS

Tennessee, University of

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


461

Stanford University Precourt Institute for Energy  

E-Print Network (OSTI)

for Energy Efficiency · 2009 ­ Precourt Institute for Energy Current Faculty Stanford History ManyStanford University Precourt Institute for Energy The Precourt Institute for Energy at Stanford Lynn Orr Director Stanford University Senate February 18, 2010 #12;2 Observations · Energy

Ford, James

462

Institute of Transportation Studies Portland State University  

E-Print Network (OSTI)

Institute of Transportation Studies Portland State University November 2007 Transit's Dirty Little Director, UCLA Institute of Transportation Studies #12;Institute of Transportation Studies Transit of Transportation Studies Fewer than 40 trips per capita since 1965 Trend in Transit Ridership Per Capita 1900

Bertini, Robert L.

463

CALIFORNIA INSTITUTE OF TECHNOLOGY Application Instructions  

E-Print Network (OSTI)

CALIFORNIA INSTITUTE OF TECHNOLOGY Application Instructions REQUIREMENTS AND ADMISSION CRITERIA of the Dean of Graduate Studies, California Institute of Technology, Mail Code 23087, 1200 E. California Blvd the property of the California Institute of Technology. No materials will be returned to the applicant

Greer, Julia R.

464

Geophysical Institute. Biennial report, 1993-1994  

SciTech Connect

The 1993-1994 Geophysical Institute Biennial Report was published in November 1995 by the Geophysical Institute of the University of Alaska Fairbanks. It contains an overview of the Geophysical Institute, the Director`s Note, and research presentations concerning the following subjects: Scientific Predictions, Space Physics, Atmospheric Sciences, Snow, Ice and Permafrost, Tectonics and Sedimentation, Seismology, Volcanology, Remote Sensing, and other projects.

NONE

1996-01-01T23:59:59.000Z

465

Institute for Software Technology Maintenance Proze  

E-Print Network (OSTI)

Maintenance Institute for Software Technology Ersatz es bestehenden Systems Idee: Maintenance ist teuer. Durch! #12;VU Software Maintenance Institute for Software Technology Fehler im neuen System Software ist Management berücksichtigt Maintenance-Ziele und Rahmenbedingungen VU Software Maintenance Institute

466

Northwest Energy Education Institute Lane Community College  

E-Print Network (OSTI)

Northwest Energy Education Institute at Lane Community College Roger Ebbage, Director Northwest Energy Education Institute at Lane Community College Eugene, Oregon ebbager@lanecc.edu #12;Northwest Energy Education Institute at Lane Community College Mission Statement: "To be the Preferred Source

467

SDPISustainable Development Policy Institute Pakistan Forest  

E-Print Network (OSTI)

#12;SDPISustainable Development Policy Institute Quarterly Pakistan Forest Digest Vol. 01, No. 02 Development Policy Institute Pakistan Forest Digest ii Vol. 1, No. 2, July ­ September 2010 Quarterly Pakistan Board Dr. Urs Geiser Zurich University, Switzerland Dr. Mamoona Wali Muhammad Pakistan Forest Institute

Richner, Heinz

468

LANL Institutes - Institute of Geophysics and Planetary Physics  

NLE Websites -- All DOE Office Websites (Extended Search)

Expanding the Frontiers of Astrophysical, Space, Earth, & Climate Sciences & Their Signatures The Institute of Geophysics, Planetary Physics, and Signatures at Los Alamos National Laboratory is committed to promoting and supporting high quality, cutting-edge science in the areas of astrophysics, space physics, solid planetary geoscience, and climate science. These subject areas are selected based on their breadth of scientific challenges facing the international scientific community, as well as relevance to the strategic objective to extend Laboratory scientific excellence. IGPPS/LANL makes a special effort to promote and support new research ideas, which can be further developed through seed funding into major programs supported by federal or other funding sources. IGPPS also supports

469

14128_JGI_CR_07:2007 JGI Progress Report  

NLE Websites -- All DOE Office Websites (Extended Search)

JOINT JOINT GENOME INSTITUTE PROGRESS REPORT 2007 U.S. DEPARTMENT OF ENERGY On the cover: The eucalyptus tree was selected in 2007 for se- quencing by the JGI. The microbial community in the termite hindgut of Nasutitermes corniger was the subject of a study published in the November 22, 2007 edition of the journal, Nature. JGI Mission The U.S. Department of Energy Joint Genome Institute, supported by the DOE Office of Science, unites the expertise of five national laboratories-Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest - along with the Stanford Human Genome Center to advance genomics in support of the DOE mis- sions related to clean energy generation and environmental char- acterization and cleanup. JGI's Walnut Creek, CA, Production

470

Category:Public Institutions | Open Energy Information  

Open Energy Info (EERE)

Alternative_Energy_Institute\" title=\"Alternative Energy Alternative_Energy_Institute\" title=\"Alternative Energy Institute\">Alternative Energy Institute","title":"Alternative Energy Institute","link":null,"lat":34.9848017,"lon":-101.9100121,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""},{"text":"Austin Clean Energy Incubator","title":"Austin Clean Energy Incubator","link":null,"lat":30.396989,"lon":-97.735768,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""},{"text":"

471

Minority Serving Institutions Internship Program | National Nuclear  

National Nuclear Security Administration (NNSA)

Institutions Internship Program | National Nuclear Institutions Internship Program | National Nuclear Security Administration Our Mission Managing the Stockpile Preventing Proliferation Powering the Nuclear Navy Emergency Response Recapitalizing Our Infrastructure Continuing Management Reform Countering Nuclear Terrorism About Us Our Programs Our History Who We Are Our Leadership Our Locations Budget Our Operations Media Room Congressional Testimony Fact Sheets Newsletters Press Releases Speeches Events Social Media Video Gallery Photo Gallery NNSA Archive Federal Employment Apply for Our Jobs Our Jobs Working at NNSA Blog Minority Serving Institutions Internship Program Home > Federal Employment > Apply for Our Jobs > How to Apply > Student Jobs > Minority Serving Institutions Internship Program Minority Serving Institutions Internship Program

472

Minority Serving Institutions Internship Program | National Nuclear  

NLE Websites -- All DOE Office Websites (Extended Search)

Institutions Internship Program | National Nuclear Institutions Internship Program | National Nuclear Security Administration Our Mission Managing the Stockpile Preventing Proliferation Powering the Nuclear Navy Emergency Response Recapitalizing Our Infrastructure Continuing Management Reform Countering Nuclear Terrorism About Us Our Programs Our History Who We Are Our Leadership Our Locations Budget Our Operations Media Room Congressional Testimony Fact Sheets Newsletters Press Releases Speeches Events Social Media Video Gallery Photo Gallery NNSA Archive Federal Employment Apply for Our Jobs Our Jobs Working at NNSA Blog Minority Serving Institutions Internship Program Home > Federal Employment > Apply for Our Jobs > How to Apply > Student Jobs > Minority Serving Institutions Internship Program Minority Serving Institutions Internship Program

473

Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T)  

Science Conference Proceedings (OSTI)

Saccharomonospora azurea Runmao et al. 1987 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonosoras are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist and over-heated grain, where they might play a role in the primary degradation of plant material by attacking hemicellulose. They are Gram-negative staining organisms classified among the usually Gram-positive actinomycetes. Next to S. viridis, S. azurea is only the second member in the genus Saccharomonospora for with a completely sequenced type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence with project status 'permanent draft', and annotation. The 4,763,832 bp long chromosome with its 4,472 protein-coding and 58 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Held, Brittany [Los Alamos National Laboratory (LANL); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Brambilla, Evelyne-Marie [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

474

Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)  

SciTech Connect

Saccharomonospora marina Liu et al. 2010 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive staining, non-acid fast, and classify among the actinomycetes. Next to S. viridis and S. azurea, S. marina is the third member in the genus Saccharomonospora for with a completely sequenced (permanent draft status) type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Lu, Megan [Los Alamos National Laboratory (LANL); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Brambilla, Evelyne-Marie [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Li, Wen-Jun [Yunnan University, Kunming, China; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

475

A small trip in the untranquil world of genomes  

Science Conference Proceedings (OSTI)

Genomes are dynamic molecules that are constantly undergoing mutations and rearrangements. The latter are large scale changes in a genome organisation that participate in the evolutionary and speciation process, but may also be involved in inherited ... Keywords: Breakpoint region, Conserved segment, Genome dynamics, Rearrangement, Synteny block, Whole genome alignment

Claire Lemaitre; Marie-France Sagot

2008-05-01T23:59:59.000Z

476

Genome Engineering with TAL Effector Nucleases  

NLE Websites -- All DOE Office Websites (Extended Search)

Genome Engineering with TAL Effector Nucleases Print Genome Engineering with TAL Effector Nucleases Print Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such as the correction of gene sequences in patients suffering from genetic diseases, the modification or insertion of genes in plants, and the generation of unique cell lines for treatment of diseases such as cancer. GE requires the development of molecular tools that can search out and bind to one unique site within a complex genome while avoiding 'off-target' interactions across the remaining billions of DNA bases present in a cell's nucleus. Using ALS Beamline 5.0.2, researchers have solved the structure of one such tool called a TAL protein, learning its mechanism of action for DNA recognition and binding.

477

Genome Engineering with TAL Effector Nucleases  

NLE Websites -- All DOE Office Websites (Extended Search)

Genome Engineering with TAL Effector Nucleases Print Genome Engineering with TAL Effector Nucleases Print Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such as the correction of gene sequences in patients suffering from genetic diseases, the modification or insertion of genes in plants, and the generation of unique cell lines for treatment of diseases such as cancer. GE requires the development of molecular tools that can search out and bind to one unique site within a complex genome while avoiding 'off-target' interactions across the remaining billions of DNA bases present in a cell's nucleus. Using ALS Beamline 5.0.2, researchers have solved the structure of one such tool called a TAL protein, learning its mechanism of action for DNA recognition and binding.

478

Genome Engineering with TAL Effector Nucleases  

NLE Websites -- All DOE Office Websites (Extended Search)

Genome Engineering with TAL Effector Nucleases Print Genome Engineering with TAL Effector Nucleases Print Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such as the correction of gene sequences in patients suffering from genetic diseases, the modification or insertion of genes in plants, and the generation of unique cell lines for treatment of diseases such as cancer. GE requires the development of molecular tools that can search out and bind to one unique site within a complex genome while avoiding 'off-target' interactions across the remaining billions of DNA bases present in a cell's nucleus. Using ALS Beamline 5.0.2, researchers have solved the structure of one such tool called a TAL protein, learning its mechanism of action for DNA recognition and binding.

479

Integrating genomic conservation data with motif discovery  

E-Print Network (OSTI)

We formalize a probabilistic model of inter-species sequence conservation for motif discovery, and demonstrate that adding large-scale genomic conservation data to an existing motif discovery procedure improves the quality ...

Danford, Timothy W. (Timothy William), 1979-

2004-01-01T23:59:59.000Z

480

First international E. coli genome meeting  

SciTech Connect

This volume is a collection of abstracts of oral presentations and poster sessions of studies reported at the First International E. Coli Genome Meeting, held September 10-14, 1992 at the University of Wisconsin.

1992-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


481

First international E. coli genome meeting  

SciTech Connect

This volume is a collection of abstracts of oral presentations and poster sessions of studies reported at the First International E. Coli Genome Meeting, held September 10-14, 1992 at the University of Wisconsin.

1992-12-31T23:59:59.000Z

482

Genome resequencing reveals multiscale geographic structure and...  

NLE Websites -- All DOE Office Websites (Extended Search)

S, Bottolo L, Freeman C, McVean G, Donnelly P. 2005. A fine-scale map of recombination rates and hotspots across the human genome. Science 310: 321-324. Neale DB, Ingvarsson PK....

483

Genome Size Varaiation in D. melanogaster  

E-Print Network (OSTI)

As yet significant portions of the genetic variation in complex traits have not been explained with genome wide association experiments; and this has led to the search for the "missing heritability". Our data support the hypothesis that variation in genome size may account for some of the missing heritability. We measured female genome sizes for 34 Drosophila melanogaster inbred strains that derived from isofemale lines established from a natural population in Raleigh, NC, in addition to a group of 40 strains artificially selected for increased and decreased body size. We provide the first evidence that significant intraspecific genome size variation exists among these Drosophila melanogaster lines and that selection has a downsizing effect on the extent of variation.

Alfrejd, Benjamin

2011-05-01T23:59:59.000Z

484

Justice and the Human Genome Project  

Science Conference Proceedings (OSTI)

Most of the essays gathered in this volume were first presented at a conference, Justice and the Human Genome, in Chicago in early November, 1991. The goal of the, conference was to consider questions of justice as they are and will be raised by the Human Genome Project. To achieve its goal of identifying and elucidating the challenges of justice inherent in genomic research and its social applications the conference drew together in one forum members from academia, medicine, and industry with interests divergent as rate-setting for insurance, the care of newborns, and the history of ethics. The essays in this volume address a number of theoretical and practical concerns relative to the meaning of genomic research.

Murphy, T.F.; Lappe, M. (eds.)

1992-01-01T23:59:59.000Z

485

Prokaryotic Genomes from Microbes Online Database  

DOE Data Explorer (OSTI)

To describe the potential functions of genes, MicrobesOnline includes protein family analyses (from InterPro and COG), metabolic maps (from KEGG), links to research papers (from UniProt and PubMed), and operon predictions for every genome. To examine each gene's evolutionary history, MicrobesOnline includes precomputed phylogenetic trees for all the gene families. It displays gene trees with genomic context or it compares the gene tree to the species tree. The tools provided with MicrobesOnline allow users to: compute customized motifs, sequence alignments, and phylogenetic trees change expression patterns in metabolic maps annotate genes in various ways The database contains more than 430 genomes. A browse tree tool and a genome browser are available, along with specialized search capabilities. (Specialized Interface)

Alm, Eric J.; Huang, Katherine H.; Price, Morgan N.; Koche, Richard P.; Keller, Keith; Dubchak, Inna L.; Arkin, Adam P.

486

Facilities and Equipment for Genomics/Comparative Functional Genomics at New York University  

Science Conference Proceedings (OSTI)

This award was for partial support for the renovation of space to house research laboratories and moveable scientific equipment for genomics/functional geonomics at New York University.

Lennie, Peter

2006-06-29T23:59:59.000Z

487

Genome Webcasts: Online Audio and Video Files about Genetics and the Human Genome Project  

DOE Data Explorer (OSTI)

•\tPresentations from special events such as the White House Millenium Evening, ôInformatics Meets Genomics and from various scientific conferences

488

Institute for Molecular Engineering | Argonne National Laboratory  

NLE Websites -- All DOE Office Websites (Extended Search)

Learn more about the Institute for Molecular Engineering. Learn more about the Institute for Molecular Engineering. When completed in early 2015, the William Eckhardt Research Center at the University of Chicago will be the home of the Institute of Molecular Engineering. Institute for Molecular Engineering The new Institute for Molecular Engineering explores innovative technologies that address fundamental societal problems through advances in nanoscale manipulation and design at a molecular scale. Addressing Societal Problems with Molecular Science With renowned scientists from around the world, the Institute for Molecular Engineering is defining a nascent field of study that has the potential to address fundamental problems of societal import. The Institute was created in partnership with the University of Chicago and builds on the tradition

489

Institutional Change Principles for Fostering Sustainability | Department  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Institutional Change Principles for Fostering Sustainability Institutional Change Principles for Fostering Sustainability Institutional Change Principles for Fostering Sustainability October 8, 2013 - 10:57am Addthis The following eight principles serve as the foundational building blocks for developing strategies to achieve institutional change-but they are not the strategies themselves. They are derived from academic literature and inform the framework for achieving institutional change in a Federal organization. Each statement is followed by a general strategy for how the principle can be translated into action. Social Network and Communications: Institutions and people change because they see or hear of others (individuals, groups, institutions, firms) behaving differently, so make sure staff see or hear about others who have

490

Minority Serving Institutions | Department of Energy  

NLE Websites -- All DOE Office Websites (Extended Search)

Institutions Institutions Minority Serving Institutions Map by Matt Loveless, Department of Energy. Our Office of Minority Economic Impact works daily to tap into the talents of students and faculty attending our nation's Minority Serving Institutions. To accomplish the mission of the Department of Energy, we need the best and brightest individuals to work at and partner with the Department. We're proud of the work of our Minority Educational Institution partners, and we work to advance our partnerships daily. Minority Serving Institutions are institutions of higher education that serve minority populations. They are unique both in their missions and in their day-to-day operations. Some of these colleges and universities are located in remote regions of the country, whereas others serve urban

491

Frameshift detection in prokaryotic genomic sequences  

Science Conference Proceedings (OSTI)

We have developed a new method for frameshift detection, a combination of ab initio and alignment-based algorithms, that can serve as a useful tool for sequencing quality control in the next generation sequencing. We evaluated the method's accuracy ... Keywords: HMM, Markov chains, bioinformatics, frameshift, frameshift detection, genomics, hidden Markov model, machine learning, prokaryotic genomic sequences, protein coding, pyrosequencing, sensitivity, sequencing quality control, specificity

Andrey Kislyuk; Alexandre Lomsadze; Alla L. Lapidus; Mark Borodovsky

2009-07-01T23:59:59.000Z

492

Prokaryotic Genomes from the Comprehensive Microbial Resource (CMR)  

DOE Data Explorer (OSTI)

The Comprehensive Microbial Resource (CMR) is a free website used to display information on all of the publicly available, complete prokaryotic genomes. In addition to the convenience of having all of the organisms on a single website, common data types across all genomes in the CMR make searches more meaningful, and cross genome analysis highlight differences and similarities between the genomes. For each genome not sequenced at TIGR two kinds of annotation are displayed: the Primary annotation taken from the genome sequencing center and the TIGR annotation generated by an automated annotation process at TIGR. Use the CMR to access information on all of the bacterial genomes or any subset of them.

493

Institutional Plan FY 2003 - 2007  

Science Conference Proceedings (OSTI)

The Fiscal Year (FY) 2003-2007 Institutional Plan describes the strategic directions and key issues that Lawrence Berkeley National Laboratory management must address with the Department of Energy (DOE) in charting its future as a multiprogram national laboratory. The Plan provides an overview of the Laboratory's mission, strategic plan, initiatives, and the resources required to fulfill its role in support of national needs in fundamental science and technology, energy resources, and environmental quality. The Plan facilitates the Department of Energy's ongoing efforts to strengthen the Integrated Laboratory System. Preparation and review of the Institutional Plan is one element of the Department of Energy's strategic management planning activities, implemented through an annual planning process. The Plan supports the President's Management Agenda and the Government Performance and Results Act of 1993. The Plan complements the current performance-based contract between the Department of Energy and the Regents of the University of California, and summarizes Best Management Practices for a potential future results-based contract as a basis for achieving DOE goals and the Laboratory's scientific and operations objectives. It identifies technical and administrative directions in the context of national energy policy and research needs and the Department of Energy's program planning initiatives. Preparation of the Plan is coordinated by the Planning and Strategic Development Office from information contributed by Berkeley Lab's scientific and support divisions and DOE comments on prior years' plans. The Laboratory Mission section identifies the specific strengths of Berkeley Lab that contribute to the mission in general and the Integrated Laboratory System in particular. The Laboratory Strategic Plan section identifies the existing activities in support of DOE Office of Science and other sponsors; support for DOE goals; and the Laboratory Scientific Vision and operations goals. The Initiatives section describes some of the specific new research programs representing major long-term opportunities for the Department of Energy and Berkeley Lab. The Operations Strategic Planning section describes our strategic thinking in the areas of human resources; site and cyber security; workforce diversity; communications and trust; integrated safety management; and technology transfer activities. The Infrastructure Strategic Planning section describes Berkeley Lab's facilities planning process and our site and facility needs. The Summary of Major Issues section provides context for discussions at the Institutional Planning On-Site Review. The Resource Projections are estimates of required budgetary authority for Berkeley Lab's research programs.

Chartock, Michael; Hansen, Todd

2003-01-27T23:59:59.000Z

494

Genomic sequencing of Pleistocene cave bears  

SciTech Connect

Despite the information content of genomic DNA, ancient DNA studies to date have largely been limited to amplification of mitochondrial DNA due to technical hurdles such as contamination and degradation of ancient DNAs. In this study, we describe two metagenomic libraries constructed using unamplified DNA extracted from the bones of two 40,000-year-old extinct cave bears. Analysis of {approx}1 Mb of sequence from each library showed that, despite significant microbial contamination, 5.8 percent and 1.1 percent of clones in the libraries contain cave bear inserts, yielding 26,861 bp of cave bear genome sequence. Alignment of this sequence to the dog genome, the closest sequenced genome to cave bear in terms of evolutionary distance, revealed roughly the expected ratio of cave bear exons, repeats and conserved noncoding sequences. Only 0.04 percent of all clones sequenced were derived from contamination with modern human DNA. Comparison of cave bear with orthologous sequences from several modern bear species revealed the evolutionary relationship of these lineages. Using the metagenomic approach described here, we have recovered substantial quantities of mammalian genomic sequence more than twice as old as any previously reported, establishing the feasibility of ancient DNA genomic sequencing programs.

Noonan, James P.; Hofreiter, Michael; Smith, Doug; Priest, JamesR.; Rohland, Nadin; Rabeder, Gernot; Krause, Johannes; Detter, J. Chris; Paabo, Svante; Rubin, Edward M.

2005-04-01T23:59:59.000Z

495

Complete genome sequence of Tolumonas auensis type strain (TA 4T)  

Science Conference Proceedings (OSTI)

Tolumonas auensis Fischer-Romero et al. 1996 is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Oth- er than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4T is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292 bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008.

Chertkov, Olga [Los Alamos National Laboratory (LANL); Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Berry, Alison M [California Institute of Technology, University of California, Davis; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Spring, Stefan [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Beller, Harry R. [Lawrence Berkeley National Laboratory (LBNL); Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

496

Complete genome sequence of Tolumonas auensis type strain (TA 4T)  

Science Conference Proceedings (OSTI)

Tolumonas auensis (Fischer-Romero et al. 1996) is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Other than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4T is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292-bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008.

Chertkov, Olga; Copeland, Alex; Lucas1, Susa; Lapidus, Alla; Berry, KerrieW.; Detter, JohnC.; Glavina Del Rio, Tijana; Hammon, Nancy; Dalin, Eileen; Tice, Hope; Pitluck, Sam; Richardson, Paul; Bruce, David; Goodwin, Lynne; Han, Cliff; Tapia, Roxanne; Saunders, Elizabeth; Schmutz, Jeremy; Brettin, Thomas; Larimer, Frank; Land, Miriam; Hauser, Loren; Spring, Stefan; Rohde, Manfred; Kyrpides, NikosC.; Ivanova, Natalia; Göker, Markus; Beller, HarryR.; Klenk, Hans-Peter; Woyke, Tanja

2011-10-04T23:59:59.000Z

497

Comments from Edison Electric Institute | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Comments from Edison Electric Institute Comments from Edison Electric Institute Consolidated Comments of the Edison Electric Institute ("EEI") on (1) DOE Interim Final Rule, RIN...

498

DOE Solar Decathlon: Southern California Institute of Architecture...  

NLE Websites -- All DOE Office Websites (Extended Search)

California Institute of Technology Team website: www.scical2013.com Photo of members of the Southern California Institute of Architecture and California Institute of Technology...

499

"The Encyclopedia of Systems Biology and OMICS" and "The ISA Infrastructure for Multi-omics Data" (GSC8 Meeting)  

Science Conference Proceedings (OSTI)

The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Eugene Kolker from Seattle Children's Hospital briefly discusses "The Encyclopedia of Systems Biology and OMICS," followed by Susanna Sansone from the EBI on "The ISA Infrastructure for multi-omics data" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 11, 2009.

Kolker, Eugene (Seattle Children's Hospital); Susanna Sansone (EBI)

2011-09-11T23:59:59.000Z

500

Designing Biological Systems for Sustainability and Programmed Environmental Interface (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Pam Silver of Harvard University gives a presentation on "Designing Biological Systems for Sustainability and Programmed Environmental Interface" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Silver, Pam [Harvard University

2011-03-23T23:59:59.000Z