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1

Seventh Annual DOE Joint Genome Institute User Meeting Sponsored By  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Seventh Annual Seventh Annual DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 20-22, 2012 Walnut Creek Marriott Walnut Creek, California Contents Speaker Presentations .......................................................................................................... 1 Poster Presentations ........................................................................................................... 13 Attendees ............................................................................................................................ 83 Author Index ....................................................................................................................... 89 Abstracts alphabetical by speaker

2

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms  

E-Print Network [OSTI]

in walnut with an AGSNP pipeline updated for SNP discoveryin walnut with an AGSNP pipeline updated for SNP discoverythe development of a pipeline (AGSNP) for genome-wide SNP

2012-01-01T23:59:59.000Z

3

DOE Joint Genome Institute Completes Soybean Genome- Data Released to  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Press Release: December 8, 2008 Press Release: December 8, 2008 DOE Joint Genome Institute Completes Soybean Genome- Data Released to Advance Biofuel, Food, & Feed Research WALNUT CREEK, CA- The U.S. Department of Energy Joint Genome Institute (DOE JGI) has released a complete draft assembly of the soybean (Glycine max) genetic code, making it widely available to the research community to advance new breeding strategies for one of the world's most valuable plant commodities. Soybean not only accounts for 70 percent of the world's edible protein, but also is an emerging feedstock for biodiesel production. Soybean is second only to corn as an agricultural commodity and is the leading U.S. agricultural export. DOE JGI's interest in sequencing the soybean centers on its use for biodiesel, a renewable, alternative fuel with the highest energy content of

4

DOE Joint Genome Institute: Soybean Genome Analysis Reveals Pathways for  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

January 13, 2010 January 13, 2010 Soybean Genome Analysis Reveals Pathways for Improving Biodiesel, Disease Resistance, and Reducing Waste Runoff WALNUT CREEK, CA-Soybean, one of the most important global sources of protein and oil, is now the first legume species with a published complete draft genome sequence. The sequence and its analysis appear in the January 14 edition of the journal Nature. The research team comprised 18 institutions, including the U.S. Department of Energy Joint Genome Institute (DOE JGI), the U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS), Purdue University and the University of North Carolina at Charlotte. The DOE, National Science Foundation, USDA and United Soybean Board supported the research. helix made of soybeans

5

DOE Joint Genome Institute: New Genomic Model Defines Microbes by  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

September 8, 2009 September 8, 2009 New Genomic Model Defines Microbes by Diet-Provides Tool for Tracking Environmental Change WALNUT CREEK, CA-In line with the U.S. Department of Energy (DOE) interest in characterizing the biotic factors involved in global carbon cycling, the DOE Joint Genome Institute (JGI) characterizes a diverse array of plants, microorganisms, and the communities in which they reside to inform options for reducing and stabilizing atmospheric greenhouse gases. Through a novel genomic approach detailed in the September 7 online edition and on the cover September 14 of the journal Proceedings of the National Academy of Sciences, an international team of scientists led by the University of New South Wales and the DOE JGI demonstrates how the microbial diversity of the oceans can be analyzed without necessarily

6

DOE Joint Genome Institute: Genome of Simplest Animal Reveals Ancient  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

21, 2008 21, 2008 Genome of Simplest Animal Reveals Ancient Lineage, Confounding Array of Complex Capabilities WALNUT CREEK, CA-As Aesop said, appearances are deceiving-even in life's tiniest critters. From first detection in the 1880s, clinging to the sides of an aquarium, to its recent characterization by the U.S. Department of Energy Joint Genome Institute (DOE JGI), a simple and primitive animal, Trichoplax adhaerens, appears to harbor a far more complex suite of capabilities than meets the eye. The findings, reported in the August 21 online edition of the journal Nature, establish a group of organisms as a branching point of animal evolution and identify sets of genes, or a "parts list," employed by organisms that have evolved along particular branches.

7

DOE Joint Genome Institute: Scientists Publish Complete Genetic Blueprint  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

January 28, 2009 January 28, 2009 Scientists Publish Complete Genetic Blueprint of Key Biofuels Crop WALNUT CREEK, CA-Scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and several partner institutions have published the sequence and analysis of the complete genome of sorghum, a major food and fodder plant with high potential as a bioenergy crop. The genome data will aid scientists in optimizing sorghum and other crops not only for food and fodder use, but also for biofuels production. The comparative analysis of the sorghum genome appears in the January 29 edition of the journal Nature. Prized for its drought resistance and high productivity, sorghum is currently the second most prevalent biofuels crop in the United States, behind corn. Grain sorghum produces the same amount of ethanol per bushel

8

DOE Joint Genome Institute: Biofuel-Producing Bacteria, Insect Gut  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

June 29, 2009 June 29, 2009 Biofuel-Producing Bacteria, Insect Gut Microbes, ~ 70 other Projects Fill DOE Joint Genome Institute 2010 Pipeline WALNUT CREEK, CA-The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has selected 71 new genomic sequencing projects for its 2010 Community Sequencing Program (CSP)-a targeted sampling of the planet's biodiversity-to be characterized for bioenergy, climate, and environmental applications. JGI's Community Sequencing Program is the largest genomic sequencing effort in the world focused on nonmedical organisms, enabling scientists from universities and national laboratories to probe the hidden world of microbes and plants to tap nature's ingenuity for innovative solutions to the nation's major challenges in energy, climate, and environment. The

9

Accelerating Biofuel Feedstock Crop Improvement with Miscanthus Genomics (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

Kankshita Swaminathan of the Energy Biosciences Institute speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Swaminathan, Kankshita [Energy Biosciences Institute

2014-03-20T23:59:59.000Z

10

DOE Joint Genome Institute: DOE JGI Releases Expanded Version of  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

28, 2009 28, 2009 DOE JGI Releases Expanded Version of Phytozome.net: Clearinghouse for Comparative Plant Genomics Data WALNUT CREEK, CA-An enhanced version of Phytozome.net, a web portal for comparative plant genomics geared to advance biofuel, food, feed, and fiber research, has been released by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). Phytozome provides a central "hub" for web access to a rapidly growing number of plant genomes, and includes tools for visualization of plant genomes and associated annotations, sequence analysis, and bulk, as well as targeted, plant data retrieval. The gene families available in Phytozome, defined at several evolutionarily significant epochs, provide a framework for the transfer of functional information to important biofuel and

11

DOE Joint Genome Institute: DNA of Uncultured Organisms Sequenced Using  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

21, 2009 21, 2009 DNA of Uncultured Organisms Sequenced Using Novel Single-Cell Approach Download a Podcast of this Release! WALNUT CREEK, CA-Scientists from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Bigelow Laboratory for Ocean Sciences have assembled high quality, contamination-free draft genomes of uncultured biodegrading microorganisms using a novel single cell genome sequencing approach. This proof of principle study, published in the April 23 edition of the journal PLoS One, offers researchers a new method to access and decipher the information embedded in genomes of interest with only minute quantities of DNA. "Most of the microbial genomes sequenced to date are derived from organisms cultured in the laboratory," said DOE JGI Director Eddy Rubin.

12

DOE Joint Genome Institute: Next Gen Sequencing Technology Pinpoint  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

February 12, 2009 February 12, 2009 Next Gen Sequencing Technology Pinpoint "On-Off Switches" in Genomes WALNUT CREEK, CA-Scientists from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), Lawrence Berkeley National Laboratory, and the University of California, San Diego have developed a set of molecular tools that provide important insight into the complex genomes of multicellular organisms. The strategy promises to clarify the longstanding mystery of the role played by vast stretches of DNA sequence that do not code for the functional units-genes-that nevertheless may have a powerful regulatory influence. The research is described in the 12 February edition of the journal Nature. DOE bioenergy researchers have an interest in identifying these regulatory

13

Joint Genome Institute's Automation Approach and History  

E-Print Network [OSTI]

Joint Genome Institute’s Automation Approach and Historythroughput environment; – automation does not necessarilyissues “Islands of Automation” – modular instruments with

Roberts, Simon

2006-01-01T23:59:59.000Z

14

DOE Joint Genome Institute: Establishing Standard Definitions for Genome  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

October 8, 2009 October 8, 2009 Establishing Standard Definitions for Genome Sequences Download a podcast of this release! WALNUT CREEK, CA-In 1996, researchers from major genome sequencing centers around the world convened on the island of Bermuda and defined a finished genome as a gapless sequence with a nucleotide error rate of one or less in 10,000 bases. This effectively set the quality target for the human genome effort and was quickly applied to other genome projects. If a genome sequence didn't meet this stringent criterion, it was simply considered a "draft." More than a decade later, researchers are finding that with the advent of the latest sequencing technologies the terms "draft" and "finished" are no longer sufficient to describe the varying levels of genome sequence

15

Metagenomic and Metaproteomic Analyses of Symbioses between Bacteria and Gutless Marine Worms (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

Nicole Dubilier of the Max Planck Institute speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Dubilier, Nicole [Max Planck Institute

2014-03-19T23:59:59.000Z

16

Institute for Plant Genomics and Biotechnology GENOMICS AND BIOTECHNOLOGY  

E-Print Network [OSTI]

Institute for Plant Genomics and Biotechnology GENOMICS AND BIOTECHNOLOGY A multidisciplinary organization, the Institute for Plant Genomics and Biotechnology is a composed of faculty members representing projects at the Institute for Plant Genomics and Biotechnology include the development of transgenic plants

17

DOE Joint Genome Institute: Breaking down cellulose without blasting  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

4, 2011 4, 2011 Breaking down cellulose without blasting lignin: "Dry rot" genome offers lessons for biofuel pretreatment WALNUT CREEK, Calif.-Feared by realtors and homeowners alike, dry rot due to the fungus Serpula lacrymans causes millions of dollars worth of damage to homes and buildings around the world. This brown rot fungus' capacity to break down the cellulose in wood led to its selection for sequencing by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) in 2007, with the goal of identifying the enzymes involved in the degradation process and using the information to improve cellulosic biofuels production. Photo: A variant of Serpula lacrymans causes dry rot. (Dave Brown via Flickr/Creative Commons Attribution 2.0) As reported online July 14 in Science Express, an international team of

18

Communicating Genomics:GTL  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 24-26, 2010 Walnut Creek Marriott Walnut Creek, California iii Contents Speaker Presentations ......................................................................................... 1 Poster Presentations........................................................................................... 11 Attendees............................................................................................................. 67 Author Index ...................................................................................................... 75 iv Posters alphabetical by first author. *Presenting author 1 Speaker Presentations Abstracts alphabetical by speaker

19

Microbial Genomics Data from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

As of March 2008, The Joint Genome Institute has released 296 Prokaryotic microbial sites, with 216 in finished status.

20

DOE Joint Genome Institute: Model Microbial Community for Studying  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

October 22, 2009 October 22, 2009 Model Microbial Community for Studying Expanding Dead Zones Characterized WALNUT CREEK, CA-Among the many changes in the ocean is the expansion of oxygen-deficient or oxygen minimum zones (OMZs), also known as dead zones, which affect the processes by which carbon is captured and sequestered on the seafloor and alter the microbial activities that impact the rate and magnitude of ocean carbon sequestration. Despite the importance of these effects, very little is known about the metabolism of OMZ microbes and how they respond to environmental changes. In the Oct. 23 issue of the journal Science, researchers from the University of British Columbia and the U.S. Department of Energy Joint Genome Institute (DOE JGI) describe the metagenome of an abundant but

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


21

Joint Genome Institute's Automation Approach and History  

SciTech Connect (OSTI)

Department of Energy/Joint Genome Institute (DOE/JGI) collaborates with DOE national laboratories and community users, to advance genome science in support of the DOE missions of clean bio-energy, carbon cycling, and bioremediation.

Roberts, Simon

2006-07-05T23:59:59.000Z

22

Communicating Genomics:GTL  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Annual Annual DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 29-April 1, 2006 Embassy Suites Hotel and DOE Joint Genome Institute Walnut Creek, California iii Contents Agenda .................................................................................................................. iv Speaker Presentations . .........................................................................................1 Abtracts in order of presentation according to agenda (p. iv) Poster Presentations ..............................................................................................9 Posters alphabetical by first author. *Presenting author. Attendees...............................................................................................................75

23

DOE Joint Genome Institute: Genes from Tiny Algae Shed Light on Big Role  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

April 9, 2009 April 9, 2009 Genes from Tiny Algae Shed Light on Big Role Managing Carbon in World's Oceans & Coping with Environmental Change WALNUT CREEK, CA-Scientists from two-dozen research organizations led by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Monterey Bay Aquarium Research Institute (MBARI) have decoded genomes of two algal strains, highlighting the genes enabling them to capture carbon and maintain its delicate balance in the oceans. These findings, from a team led by Alexandra Z. Worden of MBARI and published in the April 10 edition of the journal Science, will illuminate cellular processes related to algae-derived biofuels being pursued by DOE scientists. The study sampled two geographically diverse isolates of the photosynthetic

24

Joint Genome Institute (JGI) Projects at NERSC  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Joint Genome Institute Joint Genome Institute (JGI) Joint Genome Institute (JGI) nicole-illumina-flowcell.jpg Key Challenges: Ensuring that there is a robust computational infrastructure for managing, storing and gleaning scientific insights from the torrent of data that constantly flows from the advanced sequencing platforms at the Department of Energy Joint Genome Institute (JGI). JGI sequencing capacity exceeds 40 billion DNA base pairs per year and is growing at a rate that exceeds computer hardware improvements, with exponential increases in computation and storage needed. JGI will generate about 1 petabyte of data in their first year as a NERSC partner; this is expected to double each year. Why it Matters: JGI is the primary production sequencing facility for the DOE. By revealing the genetic blueprint and fundamental principles that

25

A Taste of Algal Genomes from the Joint Genome Institute  

SciTech Connect (OSTI)

Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and economic costs through toxic blooms, provide models for the study of symbiosis, photosynthesis, and eukaryotic evolution, and are candidate sources for bio-fuels; all of these research areas are part of the mission of DOE's Joint Genome Institute (JGI). To date JGI has sequenced, assembled, annotated, and released to the public the genomes of 18 species and strains of algae, sampling almost all of the major clades of photosynthetic eukaryotes. With more algal genomes currently undergoing analysis, JGI continues its commitment to driving forward basic and applied algal science. Among these ongoing projects are the pan-genome of the dominant coccolithophore Emiliania huxleyi, the interrelationships between the 4 genomes in the nucleomorph-containing Bigelowiella natans and Guillardia theta, and the search for symbiosis genes of lichens.

Kuo, Alan; Grigoriev, Igor

2012-06-17T23:59:59.000Z

26

DOE Joint Genome Institute: Unraveling the Threads: Simplest cotton genome  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

December 19, 2012 December 19, 2012 Unraveling the Threads: Simplest cotton genome offers clues for fiber improvements From the stockings decorating mantles to the new outfits in display windows calling to shoppers, cotton is woven into the fabric of the holiday season. For bioenergy researchers, however, fiber composition matters more than color and texture as each cotton strand is composed of more than two dozen coils of cellulose, a target biomass for next-generation biofuels. In the December 20, 2012 edition of Nature, an international consortium of researchers from 31 institutions including a team from the U.S. Department of Energy Joint Genome Institute (DOE JGI) present a high-quality draft assembly of the simplest cotton (Gossypium raimondii) genome. Additionally,

27

Illumina Production Sequencing at the DOE Joint Genome Institute - Workflow and Optimizations  

SciTech Connect (OSTI)

The U.S. Department of Energy (DOE) Joint Genome Institute?s (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the DOE mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI?s Production Sequencing group, the Illumina Genome Analyzer pipeline has been established as one of three sequencing platforms, along with Roche/454 and ABI/Sanger. Optimization of the Illumina pipeline has been ongoing with the aim of continual process improvement of the laboratory workflow. These process improvement projects are being led by the JGI?s Process Optimization, Sequencing Technologies, Instrumentation& Engineering, and the New Technology Production groups. Primary focus has been on improving the procedural ergonomics and the technicians? operating environment, reducing manually intensive technician operations with different tools, reducing associated production costs, and improving the overall process and generated sequence quality. The U.S. DOE JGI was established in 1997 in Walnut Creek, CA, to unite the expertise and resources of five national laboratories? Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest ? along with HudsonAlpha Institute for Biotechnology. JGI is operated by the University of California for the U.S. DOE.

Tarver, Angela; Fern, Alison; Diego, Matthew San; Kennedy, Megan; Zane, Matthew; Daum, Christopher; Hack, Christopher; Tang, Eric; Deshpande, Shweta; Cheng, Jan-Fang; Roberts, Simon; Alexandre, Melanie; Harmon-Smith, Miranda; Lucas, Susan

2010-06-18T23:59:59.000Z

28

is a Bioinformatics Scientist at the Institute for Genomic  

E-Print Network [OSTI]

Mihai Pop is a Bioinformatics Scientist at the Institute for Genomic Research. He earned his PhD in Computer Science from Johns Hopkins University in 2000. His research interests include genome assembly and comparative genomics. Adam Phillippy is a Bioinformatics Software Engineer at The Institute for Genomic

Salzberg, Steven

29

DOE Joint Genome Institute: Tringe on Popular Science's "Brilliant 10"  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

6, 2011 6, 2011 Tringe on Popular Science's "Brilliant 10" List WALNUT CREEK, Calif.-Susannah Green Tringe of the DOE Joint Genome Institute (DOE JGI) has been named one of 2011's "Brilliant 10," the annual list compiled by Popular Science magazine of top young researchers. In adding her name to the list, which appears in the October issue, the magazine recognized her $2.5 million grant from the DOE Early Career Research Program to study the role of microbial communities in restored wetlands in the San Francisco Bay-Delta region of California and their impact on long-term carbon sequestration. Bigelow's Dashiell Masland working Photo: Tringe wading into the Brilliant 10 list The Popular Science Brilliant 10 recognizes scientists and researchers

30

Genome Engineering  

SciTech Connect (OSTI)

Dan Voytas, University of Minnesota, at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif

Voytas, Dan [University of Minnesota

2014-03-20T23:59:59.000Z

31

DOE Joint Genome Institute: Mite-y Genomic Resources For Bioenergy Crop  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

23, 2011 23, 2011 Mite-y Genomic Resources For Bioenergy Crop Protection WALNUT CREEK/BERKELEY, Calif.-For a pest that isn't quite the size of a comma on a keyboard, the two-spotted spider mite can do a disproportionate amount of damage. These web-spinners extract the nutrients they need from leaves of more than a thousand different plant species, including bioenergy feedstocks and food staples. The cost of chemically controlling spider mites to counteract reduced harvest yields hovers around $1 billion annually, reflecting their significant economic impact. spider mite Photo: The web-spinning two-spotted spider mite was sequenced at the DOE JGI. (M. Grbic) With a 90-million nucleotide genome, the smallest of those that belong to the group of animals with external skeletons or arthropods, the two-spotted

32

Eukaryotic Genomics Data from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

From the JGI webportal users can choose Eukaryotic genomes from a photo list, access the JGI FTP directories to download data files, use the Tree of Life navigation tool, or choose a genome and go directly to a website specific to that one genome. The individual sites include direct access to download sequence files, BLAST, search, view and navigate the genomic annotations.

33

Genome Rearrangement and Planning Institute of Information Systems  

E-Print Network [OSTI]

Genome Rearrangement and Planning Esra Erdem Institute of Information Systems Vienna University Avenue, Toronto, Canada e.tillier@utoronto.ca Abstract The genome rearrangement problem is to find the most eco­ nomical explanation for observed differences between the gene orders of two genomes

Erdem, Esra

34

DOE Joint Genome Institute: Same Fungus, Different Strains: A Comparative  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

3, 2011 3, 2011 Same Fungus, Different Strains: A Comparative Genomics Approach for Improved "Green" Chemical Production WALNUT CREEK, Calif.-Fungi play key roles in nature and are valued for their great importance in industry. Consider citric acid, a key additive in several foods and pharmaceuticals produced on a large-scale basis for decades with the help of the filamentous fungus Aspergillus niger. While A. niger is an integral player in the carbon cycle, it possesses an arsenal of enzymes that can be deployed in breaking down plant cell walls to free up sugars that can then be fermented and distilled into biofuel, a process being optimized by U.S. Department of Energy researchers. Susannah Tringe Photo: Aspergillus niger conidiospore by Kathie T. Hodges, Cornell.

35

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network [OSTI]

Stanford Human Genome Center (SHGC) began collaborating withscientific goals, and the JGI SHGC kept pace, focusing on

Gilbert, David

2009-01-01T23:59:59.000Z

36

DOE Joint Genome Institute: Sentinel of Change: Water Flea Genome to  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

February 3, 2011 February 3, 2011 Sentinel of Change: Water Flea Genome to Improve Environmental Monitoring Capabilities WALNUT CREEK, Calif.-A tiny crustacean that has been used for decades to develop and monitor environmental regulations is the first of its kind to have its genetic code sequenced and analyzed-revealing the most gene-packed animal characterized to date. The information deciphered could help researchers develop and conduct real-time monitoring systems of the effects of environmental remediation efforts. Daphnia pulex (commonly called water flea) Photo: Dr. Jan Michels, Christian-Albrechts-University, Kiel Daphnia pulex (commonly called water flea) Considered a keystone species in freshwater ecosystems, the water flea, Daphnia pulex, is roughly the size of the equal sign on a keyboard. Its 200

37

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World  

Broader source: Energy.gov (indexed) [DOE]

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot August 13, 2012 - 2:33pm Addthis By developing a better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for them in times of drought. By developing a better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for them in times of drought. Charles Rousseaux Charles Rousseaux Senior Writer, Office of Science What Is A Weed It's also known as a mouse-ear cress. The scientific name is Arababidopsis thaliana.

38

DOE Joint Genome Institute: DOE JGI Produces New QC Tool for Microbial  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

May 24, 2010 May 24, 2010 DOE JGI Produces New QC Tool for Microbial Genomes WALNUT CREEK, CA-More than a thousand microbial genomes have been sequenced at various sequencing centers in the past 15 years to better understand their roles in tasks ranging from bioenergy to health to environmental cleanup. Conservative estimates suggest roughly 10,000 microbial genomes will be publicly available within the next two years, but genomic standards have not caught up with the technological advances that have made the sequencing process faster and cheaper. As a result, the torrent of DNA sequences being released has varying levels of quality, which impacts researchers' ability to use this information. To assist in checking the quality of the microbial genomic DNA sequences generated before they are submitted to the federally funded public archive

39

DOE Joint Genome Institute: Peach Genome Offers Insights into Breeding  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

March 24, 2013 March 24, 2013 Peach Genome Offers Insights into Breeding Strategies for Biofuels Crops Rapidly growing trees like poplars and willows are candidate "biofuel crops" from which it is expected that cellulosic ethanol and higher energy content fuels can be efficiently extracted. Domesticating these crops requires a deep understanding of the physiology and genetics of trees, and scientists are turning to long-domesticated fruit trees for hints. The relationship between a peach and a poplar may not be obvious at first glance, but to botanists both trees are part of the rosid superfamily, which includes not only fruit crops like apples, strawberries, cherries, and almonds, but many other plants as well, including rose that gives the superfamily its name.

40

DOE Joint Genome Institute: Adaptable Button Mushroom Serves Up  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

8, 2012 8, 2012 Adaptable Button Mushroom Serves Up Biomass-Degrading Genes Critical to Managing the Planet's Carbon Stores The button mushroom occupies a prominent place in our diet and in the grocery store where it boasts a tasty multibillion-dollar niche, while in nature, Agaricus bisporus is known to decay leaf matter on the forest floor. Now, owing to an international collaboration of two-dozen institutions led by the French National Institute for Agricultural Research (INRA) and the U.S. Department of Energy Joint Genome Institute (DOE JGI), the full repertoire of A. bisporus genes has been determined. In particular, new work shows how its genes are actually deployed not only in leaf decay but also wood decay and in the development of fruiting bodies (the above ground part of the mushroom harvested for food). The work also

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


41

Cooking with Walnuts (Spanish)  

E-Print Network [OSTI]

Recetas con Nueces de Castilla (walnuts) Las nueces de Castilla son una excelente fuente de prote?nas y minerales. Una onza de nueces de Castilla (el equivalente a 14 mitades de nuez, aproximadamente) contiene m?s o menos 180 calor?as, sobre todo... por su alto contenido de grasa. Las nueces de castilla a?aden sabor a las ensaladas, panes, platillos principales y postres. Almacenamiento Las nueces de Castilla se conservar?n fresca en su bolsa sellada durante aproximadamente 6 meses. Una vez...

Anding, Jenna

2001-09-10T23:59:59.000Z

42

DOE Joint Genome Institute: DOE JGI Announces 2011 Community Sequencing  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

October 4, 2010 October 4, 2010 Bigger is Better: DOE JGI Announces 2011 Community Sequencing Program Portfolio The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has selected 35 new genomic sequencing projects for its 2011 Community Sequencing Program (CSP)-a targeted sampling of the planet's biodiversity-to be characterized for bioenergy and environmental applications. A sample of CSP 2011 projects *[see photo credits below] Supported by the Office of Biological and Environmental Research in the DOE Office of Science, the DOE JGI's Community Sequencing Program enables scientists from universities and national laboratories around the world to probe the hidden world of microbes and plants for innovative solutions to the nation's major challenges in energy, climate, and environment. This

43

DOE Joint Genome Institute: First Wild Grass Species and Model System for  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

February 10, 2010 February 10, 2010 First Wild Grass Species and Model System for Energy Crops Sequenced WALNUT CREEK, CA-As the U.S. Department of Energy (DOE) works toward developing sustainable sources of clean renewable energy, perennial grasses have emerged as major candidates for the commercial production of cellulosic biofuels from feedstocks. However, little is known about the specific biological traits of the grasses that might contribute to their usefulness for energy production, in part because such grasses typically have long lifecycles and possess large, complex genomes, making them difficult to study. Representative genomes for two of the three major subfamilies of grasses-those that include rice, maize, sorghum and sugar cane-have already been sequenced. Now in the February 11 edition of the journal

44

JGI - 2009 Genome Sequencing Targets  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

July 2, 2008 July 2, 2008 Pine Tree, Boat-Boring Bivalve "Bugs", Duck Weed, Oil-Producing Microalgae, Stinkbird Gut, 40 Others Top DOE Joint Genome Institute 2009 Genome Sequencing Targets WALNUT CREEK, CA-In the continuing effort to tap the vast, unexplored reaches of the earth's microbial and plant domains for bioenergy and environmental applications, the DOE Joint Genome Institute (DOE JGI) has announced its latest portfolio of DNA sequencing projects that it will undertake in the coming year. The 44 projects, culled from nearly 150 proposals received through the Community Sequencing Program (CSP), represent over 60 billion nucleotides of data to be generated through this biodiversity sampling campaign-roughly the equivalent of 20 human genomes. "The scientific and technological advances enabled by the information

45

Cassava Genomics: can genomic technology benefit smallholder farmers in Africa? (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

Steve Rounsley of the University of Arizona speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Rounsley, Steve [University of Arizona

2014-03-20T23:59:59.000Z

46

The Scientific Foundation for Personal Genomics: Recommendations from a National Institutes of  

E-Print Network [OSTI]

The Scientific Foundation for Personal Genomics: Recommendations from a National Institutes of personal genomic tests has led to discussions about the validity and utility of such tests and the balance and the Centers for Disease Control and Prevention to review the scientific foundation for using personal genom

Church, George M.

47

DOE Joint Genome Institute | U.S. DOE Office of Science (SC)  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

DOE Joint Genome Institute DOE Joint Genome Institute Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3251 F: (301)

48

Rich Genomics Resources Facilitate Progress in Understanding Wood Formation  

SciTech Connect (OSTI)

Gerald Tuskan, Oak Ridge National Laboratory, at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif

Tuskan, Gerald [Oak Ridge National Laboratory

2014-03-20T23:59:59.000Z

49

Genomic Speciation and Adaptation in Aquilegia (2011 JGI User Meeting)  

ScienceCinema (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Scott Hodges of the University of California, Santa Barbara gives a presentation on "Genomic Speciation and Adaptation in Aquilegia" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Hodges, Scott [University of California, Santa Barbara

2011-06-03T23:59:59.000Z

50

JGI CSP Delivers First Moss Genome  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

13, 2007 13, 2007 DOE JGI Community Sequencing Program Delivers First Moss Genome WALNUT CREEK, CA--Messages from nearly a half-billion years ago, conveyed via the inventory of genes sequenced from a present-day moss, provide clues about the earliest colonization of dry land by plants. The U.S. Department of Energy Joint Genome Institute (DOE JGI) was among the leaders of an international effort uniting more than 40 institutions to complete the first genome sequencing project of a nonvascular land plant, the moss Physcomitrella patens. The team's insights into the code that enabled this seminal emergence and dominance of land by plants are published December 13 online in Science Express. Scanning electron micrograph of Physcomitrella patens gametophores (moss shoots).

51

DOE Joint Genome Institute. Relative Reference: Foxtail Millet Offers Clues  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

May 14, 2012 May 14, 2012 Relative Reference: Foxtail Millet Offers Clues for Assembling the Switchgrass Genome Arranging DNA fragments into a genome sequence that scientists can interpret is a challenge often compared to assembling a puzzle, except there is no box to provide an idea of what the picture is even supposed to be. Sometimes there's guidance in the form of other publicly-available DNA sequences from related organisms that can be used to guide the assembly process, but its usefulness depends on how closely related any two sequences are to one another. For example, a reference genome might be so distantly related from the one being assembled, it would be akin to comparing a Model-T to a contemporary hybrid car. Foxtail millet Photo: Foxtail millet (S. italica) panicle by Katrien Devos, University of

52

Whole Genome Sequencing of Rice Mutants to identify Genes Controlling Cell Wall Saccharification and Response to Biotic Stress (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

Pamela Ronald of the University of California Davis speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Ronald, Pamela [UC Davis

2014-03-20T23:59:59.000Z

53

Genomics of Plant-based Biofuels in the Journal Nature  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

3, 2008 3, 2008 DOE JGI Director Eddy Rubin Highlights the Genomics of Plant-based Biofuels in the Journal Nature WALNUT CREEK, CA-Genomics is accelerating improvements for converting plant biomass into biofuel-as an alternative to fossil fuel for the nation's transportation needs, reports Eddy Rubin, Director of the U.S. Department of Energy Joint Genome Institute (DOE JGI), in the August 14 edition of the journal Nature. In "Genomics of cellulosic biofuels," Rubin lays out a path forward for how emerging genomic technologies will contribute to a substantially different biofuels future as compared to the present corn-based ethanol industry-and in part mitigate the food-versus-fuel debate. The Nature Review is available for download (by subscription) at http://www.nature.com/.

54

Genetic Control of Mosquitoes (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

Kelly Matzen of OXITEC speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Matzen, Kelly [OXITEC

2014-03-19T23:59:59.000Z

55

DOE Systems Biology Knowledgebase: KBase (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

Adam Arkin from LBNL speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Arkin, Adam [LBNL

2014-03-20T23:59:59.000Z

56

Uncovering Signatures of Domestication Using Genomic Resequencing and Association Mapping of Common Bean  

SciTech Connect (OSTI)

Phil McClean, North Dakota State University, speaking at the 9th Annual Genomics of Energy & Environment Meeting on March 19, 2014 in Walnut Creek, Calif

McClean, Phil [North Dakota State University

2014-03-19T23:59:59.000Z

57

U.S Department of Energy Joint Genome Institute Progress Report  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

S Department of Energy S Department of Energy Joint Genome Institute Progress Report 2009 Representatives of the four DOE JGI genome programs (plant, fungal, metagenome, and microbe) grace the cover of this annual report. Three of the organisms were among the 81 projects selected in 2009 for the 2010 Community Sequencing Program portfolio. Photo credits, clockwise from bottom left: Brachypodium distachyon by Roy Kaltschmidt, LBNL; Amanita thiersii fungus by Joe McFarland; Cow rumen metagenome by Gemma Henderson, AgResearch; Soybeans by Roy Kaltschmidt, LBNL; Zymomonas mobilis Z4 by Katherine Pappas, University of Athens U.S Department of Energy Joint Genome Institute Progress Report 2009 DOE JGI Mission . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 Director's

58

Diamond Walnut Biomass Facility | Open Energy Information  

Open Energy Info (EERE)

Walnut Biomass Facility Walnut Biomass Facility Jump to: navigation, search Name Diamond Walnut Biomass Facility Facility Diamond Walnut Sector Biomass Location San Joaquin County, California Coordinates 37.9175935°, -121.1710389° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":37.9175935,"lon":-121.1710389,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

59

JGI Visiting Scientist Program The DOE Joint Genome Institute Visiting Scientist Program (VSP)  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Visiting Scientist Program Visiting Scientist Program The DOE Joint Genome Institute Visiting Scientist Program (VSP) provides an opportunity for researchers who are seeking to build upon their line of scientific inquiry by leveraging JGI experimental, computational, and personnel resources for genomic research and sequence-based science. Projects include de novo generation of genome data, assistance in interpreting and/or building on an existing data set, or the refining of new technology (e.g., single-cell genomics; metagenomics, etc.). Length of stay depends on complexity of the project being considered and availability of data and other resources. Investigators, post docs, and graduate students participating in approved JGI User Projects are also invited to apply for on-site access to JGI

60

DOE Joint Genome Institute: Beyond Genomics-DOE JGI leads method  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

September 20, 2010 September 20, 2010 Beyond Genomics-DOE JGI leads method validation effort in Metatranscriptomics Ultra-high throughput DNA sequencing platforms that allow researchers to sequence the genetic code of organisms at lightning speed for just pennies are enabling more focused genomic studies on a massive scale. One example involves the transcriptome, a tiny but complex fraction of the complete genetic sequence that is transcribed into different types of RNA molecules. These molecules provide researchers with information about what genes are turned on and off under various conditions, and what the functions of these genes are. Researchers focus on the messenger RNA (mRNA), which transfer the genetic information from the DNA to functional proteins. The bulk of cellular RNA

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


61

Development of High-Throughput Screens to Target SAM-I Riboswitches (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

Scott Hickey of the University of California Berkeley speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Hickey, Scott [UC Berkely

2014-03-19T23:59:59.000Z

62

DOE Joint Genome Institute: A DOE Office of Science User Facility of  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

DOE Joint Genome Institute DOE Joint Genome Institute Latest News R. irregularis December 20, 2013 A gluttonous plant reveals how its cellular power plant devours foreign DNA. Amborella trichopoda, a sprawling shrub that grows on just a single island in the remote South Pacific, is the only plant in its family and genus. It is also one of the oldest flowering plants, having branched off from others about 200 million years ago. more... R. irregularis November 25, 2013 How Scavenging Fungi Became a Plant's Best Friend. Glomeromycota is an ancient lineage of fungi that has a symbiotic relationship with roots that goes back nearly 420 million years to the earliest plants. More than two thirds of the world's plants depend on this soil-dwelling symbiotic fungus to survive, including critical agricultural crops such as wheat,

63

U.S. Department of Energy Joint Genome Institute Progress Report  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

U.S. Department of Energy Joint Genome Institute Progress Report Sequencing the world of possibilities for energy and the environment Table of Contents DOE JGI Mission ........................................................ 7 Director's Perspective.................................................... 8 DOE Mission Areas ................................................... 12 By the Numbers.......................................................... 14 User Map ............................................................ 15 Scientific Literature/Impact ................................ 16 DOE JGI Sequence Output .............................. 17 DOE JGI Team Science Realized ....................... 18 DOE JGI User Community ............................... 19 User Meeting 5 ...........................................................

64

The Genomes and Metagenomes (GEM) Catalogue (first presentation) and The ISA-GCDML Workshop (second presentation) (GSC8 Meeting)  

ScienceCinema (OSTI)

The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding ''Research Coordination Network'' from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Dawn Field of the NERC Centre for Ecology & Hydrology briefly introduces the GEM Catalogue, followed by Susanna Sansone of the European Bioinformatics Institute who talks about the ISA-GCDML workshop at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

Field, Dawn [NERC Centre for Ecology and Hydrology]; Sansone, Susanna [EBI

2011-04-29T23:59:59.000Z

65

Illumina GA IIx & HiSeq 2000 Production Sequenccing and QC Analysis Pipelines at the DOE Joint Genome Institute  

E-Print Network [OSTI]

PGF) in Walnut Creek, CA. Ergonomics: Program and PhilosophyIndustrial Engineers (IIE) Applied Ergonomics Conference. InEmpowering Employees in Ergonomics to improve training,

Daum, Christopher

2011-01-01T23:59:59.000Z

66

Walnut Capital Acquisitions | Open Energy Information  

Open Energy Info (EERE)

Acquisitions Acquisitions Jump to: navigation, search Name Walnut Capital Acquisitions Place Pittsburgh, Pennsylvania Zip 15232 Product Walnut Capital Acquisitions is the project development arm of Walnut Capital, one of Pittsburgh's largest and fastest growing real estate management, development and brokerage companies. Coordinates 40.438335°, -79.997459° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":40.438335,"lon":-79.997459,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

67

Single Cell Isotope Probing via Raman Microspectroscopy: A New Way for Functional Analyses of Microbes in Environmental and Medical Samples (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

David Berry, University of Vienna, at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Berry, David [University of Vienna

2014-03-20T23:59:59.000Z

68

Creating a Multi-functional Library of Grass Transcription Factors for the Energy Crop Model System Brachypodium Distachyon (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

Joshua Coomey of the University of Massachusetts Amherst, speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Coomey, Joshua [University of Massashusetts Amherst

2014-03-20T23:59:59.000Z

69

Multi-kb Illumina reads Reveal Significant Strain Variation and Rare Organisms in Aquifer (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

Itai Sharon from the University of California at Berkely speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Sharon, Itai [UC Berkely

2014-03-20T23:59:59.000Z

70

Genomic Analysis of Natural Variation for Seed and Plant Size in Maize ( JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

ScienceCinema (OSTI)

Shawn Kaeppler from the University of Wisconsin-Madison on "Genomic Analysis of Biofuel Traits in Maize and Switchgrass" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

Kaeppler, Shawn [University of Wisconsin, Madison

2013-01-15T23:59:59.000Z

71

DOE Joint Genome Institute. Pulp NonFiction: Fungal Analysis Reveals Clues  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

March 22, 2012 March 22, 2012 Pulp NonFiction: Fungal Analysis Reveals Clues for Targeted Biomass Deconstruction Without fungi and microbes to break down dead trees and leaf litter in nature, the forest floor might look like a scene from TV's "Hoarders." Ceriporiopsis subvermispora mycelium on wood Photo: Scanning electron micrograph of Ceriporiopsis subvermispora mycelium on wood. (R. Blanchette, University of Minnesota) Massive-scale genome sequencing projects supported by the U.S. Department of Energy (DOE) and being carried out at the DOE Joint Genome Institute (JGI) highlight the importance of learning how the cellulose, hemicellulose and lignin that serve as a plant's infrastructure can be broken down by these forest organisms to extract needed nutrients. Among the fungi being

72

DOE Joint Genome Institute: A DOE Office of Science User Facility of  

Broader source: All U.S. Department of Energy (DOE) Office Webpages

MyJGISubmit ProposalsInternalEmergency InfoCareers MyJGISubmit ProposalsInternalEmergency InfoCareers JGI website People Go Genomes Project List User Programs Sequencing Informatics Systems Education News & Publications Events About Us JGI Home DOE Joint Genome Institute Latest News R. irregularis December 20, 2013 A gluttonous plant reveals how its cellular power plant devours foreign DNA. Amborella trichopoda, a sprawling shrub that grows on just a single island in the remote South Pacific, is the only plant in its family and genus. It is also one of the oldest flowering plants, having branched off from others about 200 million years ago. more... R. irregularis November 25, 2013 How Scavenging Fungi Became a Plant's Best Friend. Glomeromycota is an ancient lineage of fungi that has a symbiotic relationship with roots that

73

DOE Joint Genome Institute: Making up the gut microbiome is a host-driven  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

November 16, 2010 November 16, 2010 Making up the gut microbiome is a host-driven project Baking sourdough bread requires a starter, and so do mammalian guts, which are first colonized by microbial communities from the mother and then acquire more microbes over time. These gut microbial communities are important for maintaining health and combating disease, and it's why the Human Microbiome Project launched by the National Institutes of Health in 2008 is studying the microbial communities that populate the human body by sequencing them and assembling a reference catalog, a project that involves researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). G. beringei Photo: G. beringei by rbleib While the HMP was getting off the ground, DOE JGI collaborator Howard

74

Walnut, California: Energy Resources | Open Energy Information  

Open Energy Info (EERE)

Walnut, California: Energy Resources Walnut, California: Energy Resources Jump to: navigation, search Equivalent URI DBpedia Coordinates 34.0202894°, -117.8653386° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":34.0202894,"lon":-117.8653386,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

75

Parasites of the walnut caterpillar in Texas  

E-Print Network [OSTI]

to Dr. Marvin Harris, chairman of my committee, for his guidance and encouragement in the prepara- tion of this thesis. I would also like to thank Dr. Frank Gilstrap and Dr. Joseph Schaffner for their contributions to and criticisms of this thesis... hyperparasite associated with it. Though several authors (Russel( 1913, Baerg 1928, Hasemsn 1940) apparently consider one or more of these parasites to be important in suporessing outbreaks and maintaining the walnut caterpillar at its usuaL low densities...

Pravia-Chavarria, Gloria Alba

1976-01-01T23:59:59.000Z

76

Standards in Genomic Science: An Open-Access Journal of the Genomic Standards Consortium (GSC8 Meeting)  

ScienceCinema (OSTI)

George Garrity of Michigan State University talks about the GSC's open-access journal SIGS at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

Garrity, George

2011-06-03T23:59:59.000Z

77

Ms. Arti K. Rai, Elvin R. Latty Professor of Law Duke Law School, Duke Institute for Genome Sciences & Policy  

E-Print Network [OSTI]

Institutes of Health/Department of Energy research grant to study collaborative R&D models in genomics-2001 UNIVERSITY OF SAN DIEGO SCHOOL OF LAW Assistant Professor 1996-1997 PROGRAM IN ETHICS AND THE PROFESSIONS Foundations for Policy Development, 61 DUKE LAW JOURNAL 101 (2012)

Richardson, David

78

Diatom Genome Helps Explain Their Great Diversity and Success in Trapping  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

5, 2008 5, 2008 Diatom Genome Helps Explain Their Great Diversity and Success in Trapping Excess Carbon in Oceans WALNUT CREEK, CA-Diatoms, mighty microscopic algae, have profound influence on climate, producing 20 percent of the oxygen we breathe by capturing atmospheric carbon and in so doing, countering the greenhouse effect. Since their evolutionary origins these photosynthetic wonders have come to acquire advantageous genes from bacterial, animal and plant ancestors enabling them to thrive in today's oceans. These findings, based on the analysis of the latest sequenced diatom genome, Phaeodactylum tricornutum, are published in 15 October edition of the journal Nature by an international team of researchers led by the U.S. Department of Energy Joint Genome Institute (DOE JGI) and the Ecole Normale Supérieure of

79

DOE Joint Genome Institute: A Microbiological "Template" for Mitigating  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

July 1, 2011 July 1, 2011 A Microbiological "Template" for Mitigating Methane Emissions WALNUT CREEK, Calif.-Carbon dioxide may be the most name-dropped greenhouse gas, but methane is 20 times more potent. In 2009, the U.S. Environmental Protection Agency calculated that 20 percent of the nation's human-related methane emissions were attributable to livestock digestive processes. In Australia, livestock emissions account for 12 percent of the country's total greenhouse gas emissions. Wallaby Photo:Wallaby, photo by Mehgan Murphy, Smithsonian's National Zoo. To understand how methane is produced in livestock, an international team of scientists including researchers at Australia's Commonwealth Scientific and Industrial Research Organisation (CSIRO) and the DOE JGI

80

DOE Joint Genome Institute: How Now, Inside the Cow: Nearly 30,000 Novel  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

January 27, 2011 January 27, 2011 How Now, Inside the Cow: Nearly 30,000 Novel Enzymes for Biofuel Production Improvements To download Cow Rumen data, go to: http://portal.nersc.gov/project/jgimg/CowRumenRawData/submission/ WALNUT CREEK, Calif.-Cows eat grass-this has been observed for eons. From this fibrous diet consisting mainly of the tough to degrade plant cell wall materials cellulose and hemicellulose, substances of no nutritional value to most animals, ruminants manage to extract all they need to nourish themselves, their progeny and their keepers. And now, the cow, or rather the network of organisms working unseen in the cow's forestomach or rumen, is providing researchers with vital information that may someday accelerate the large-scale deployment of biofuels. This will offer a

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


81

DOE Joint Genome Institute: Salt-loving Microbe Provides New Enzymes for  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

June 30, 2011 June 30, 2011 Salt-loving Microbe Provides New Enzymes for the Production of Next Gen Biofuels WALNUT CREEK, Calif.-In order to realize the full potential of advanced biofuels that are derived from non-food sources of lignocellulosic biomass-e.g., agricultural, forestry, and municipal waste, and crops such as poplar, switchgrass and miscanthus-new technologies that can efficiently and cost-effectively break down this biomass into simple sugars are required. Existing biomass pretreatment technologies are typically derived from the pulp and paper industry and rely on dilute acids and bases to break down the biomass. The treated biomass product is then exposed to biological catalysts, or enzymes, to liberate the sugars. Eddy Rubin and Tao Zhang Photo:Tao Zhang (left), and Eddy Rubin (right).

82

DOE Joint Genome Institute: Fungal Map of Mutations Key to Increasing  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

September 1, 2009 September 1, 2009 Fungal Map of Mutations Key to Increasing Enzyme Production for Bioenergy Use Download a podcast of this release! WALNUT CREEK, CA-In half a century, one fungus has gone from being the bane of the Army quartermasters' existence in the Pacific to industry staple and someday, as part of the U.S. Department of Energy's mission to promote national energy security through clean, renewable energy development, a biofuel producers' best friend. Trichoderma reesei's makeover is due in part to scientific explorations that led to the development of mutant fungal strains that produce large quantities of biomass-degrading enzymes. T. reesei Image: T. reesei, courtesy of Irma Salovuori, VTT Biotechnology Now an international team of researchers led by scientists at the DOE Joint

83

DOE Joint Genome Institute: Advancing Next Gen Biofuels by Turning Up the  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

October 2, 2011 October 2, 2011 Advancing Next Gen Biofuels by Turning Up the Heat on Biomass Pretreatment Processes WALNUT CREEK, Calif.-The nation's Renewable Fuels Standard calls for annual production of 36 billion gallons of biofuel by 2022. One of the biggest hurdles to achieving this goal lies in optimizing the multistep process involved in breaking down plant biomass and then converting it into fermentable sugars that can be refined into fuel for our transportation needs. To overcome this challenge, the U.S. Department of Energy supports several projects focused on identifying enzymes from fungi and microbes such as cellulases-that breakdown plant cell walls-and heat-tolerant industrial-strength host cell systems to drive these reactions. Photo: The thermophilic fungus M. thermophila

84

Robotic Enrichment Processing of Roche 454 Titanium Emlusion PCR at the DOE Joint Genome Institute  

SciTech Connect (OSTI)

Enrichment of emulsion PCR product is the most laborious and pipette-intensive step in the 454 Titanium process, posing the biggest obstacle for production-oriented scale up. The Joint Genome Institute has developed a pair of custom-made robots based on the Microlab Star liquid handling deck manufactured by Hamilton to mediate the complexity and ergonomic demands of the 454 enrichment process. The robot includes a custom built centrifuge, magnetic deck positions, as well as heating and cooling elements. At present processing eight emulsion cup samples in a single 2.5 hour run, these robots are capable of processing up to 24 emulsion cup samples. Sample emulsions are broken using the standard 454 breaking process and transferred from a pair of 50ml conical tubes to a single 2ml tube and loaded on the robot. The robot performs the enrichment protocol and produces beads in 2ml tubes ready for counting. The robot follows the Roche 454 enrichment protocol with slight exceptions to the manner in which it resuspends beads via pipette mixing rather than vortexing and a set number of null bead removal washes. The robotic process is broken down in similar discrete steps: First Melt and Neutralization, Enrichment Primer Annealing, Enrichment Bead Incubation, Null Bead Removal, Second Melt and Neutralization and Sequencing Primer Annealing. Data indicating our improvements in enrichment efficiency and total number of bases per run will also be shown.

Hamilton, Matthew; Wilson, Steven; Bauer, Diane; Miller, Don; Duffy-Wei, Kecia; Hammon, Nancy; Lucas, Susan; Pollard, Martin; Cheng, Jan-Fang

2010-05-28T23:59:59.000Z

85

Genome-Scale Discovery of Cell Wall Biosynthesis Genes in Populus (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

ScienceCinema (OSTI)

Wellington Muchero from Oak Ridge National Laboratory gives a talk titled "Discovery of Cell Wall Biosynthesis Genes in Populus" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Muchero, Wellington [Oak Ridge National Laboratory

2013-01-22T23:59:59.000Z

86

Figure 1. Rapidly wilting black walnut in the final stage of thousand cankers  

E-Print Network [OSTI]

, and Chihuahua, Mexico (Figure 3). This range appears to coincide largely with the distribution of Arizona walnut

87

English walnut rootstocks help avoid blackline disease, but produce less than ‘Paradox’ hybrid  

E-Print Network [OSTI]

rootstock selection can help to prevent blackline infection.English walnut rootstocks help avoid blackline disease, but

Grant, Joseph A.; McGranahan, Gale H.

2005-01-01T23:59:59.000Z

88

First Annual U.S. Department of Energy Office of Science Joint Genome Institute User Meeting  

E-Print Network [OSTI]

dc4el@u.washington.edu Samuel Pitluck DOE Joint Genome29 Pitluck, Sam ..14 Plugge,3 Sanjay Israni, 3 Sam Pitluck, 3 Miriam L. Land, 4 Frank W.

Various

2006-01-01T23:59:59.000Z

89

First Annual U.S. Department of Energy Office of Science Joint Genome Institute User Meeting  

E-Print Network [OSTI]

solvents tetrachloroethene (PCE) and trichloroethene (TCE),PCBs. The genome of the PCE-dechlorinating D. ethenogenesin D. ethenogenes grown on PCE or TCE by qPCR showed high

Various

2006-01-01T23:59:59.000Z

90

Synthetic Biology and Bioenergy: Helping the Good Guy and Stopping the Bad (2014 DOE JGI Genomics of Energy & Environment Meeting)  

SciTech Connect (OSTI)

Maria Mercedes-Roca of the Zamorano Panamerican Agriculture School speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

Mercedes-Roca, Maria [Zamorano Panamerican Agriculture School

2014-03-19T23:59:59.000Z

91

Walnut Wind Project Wind Farm | Open Energy Information  

Open Energy Info (EERE)

Walnut Wind Project Wind Farm Walnut Wind Project Wind Farm Jump to: navigation, search Name Walnut Wind Project Wind Farm Facility Walnut Wind Project Sector Wind energy Facility Type Commercial Scale Wind Facility Status In Service Owner MidAmerican Energy Developer EnXco Energy Purchaser MidAmerican Energy Location Pottawattamie County IA Coordinates 41.484094°, -95.185339° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":41.484094,"lon":-95.185339,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

92

Institutional  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

institutional Sign In About | Careers | Contact | Investors | bpa.gov Search Policy & Reporting Expand Policy & Reporting EE Sectors Expand EE Sectors Technology & Innovation...

93

Tomographic X-ray data of a walnut  

E-Print Network [OSTI]

This is the documentation of the tomographic X-ray data of a walnut made available at http://www.fips.fi/dataset.php . The data can be freely used for scientific purposes with appropriate references to the data and to this document in arXiv. The data set consists of (1) the X-ray sinogram of a single 2D slice of the walnut with three different resolutions and (2) the corresponding measurement matrices modeling the linear operation of the X-ray transform. Each of these sinograms was obtained from a measured 120-projection fan-beam sinogram by down-sampling and taking logarithms. The original (measured) sinogram is also provided in its original form and resolution. In addition, a larger set of 1200 projections of the same walnut was measured and a high-resolution filtered back-projection reconstruction was computed from this data; both the sinogram and the FBP reconstruction are included in the data set, the latter serving as a ground truth reconstruction.

Hämäläinen, Keijo; Kallonen, Aki; Kujanpää, Antti; Niemi, Esa; Siltanen, Samuli

2015-01-01T23:59:59.000Z

94

Abstract IA37: Clinical genomics  

Science Journals Connector (OSTI)

...Research. 15 October 2014 meeting-abstract Clinical Genomics Clinical Genomics: Oral Presentations - Invited Abstracts Abstracts...2013; San Diego, CA Abstract IA37: Clinical genomics Katherine A. Janeway Dana-Farber Cancer Institute...

Katherine A. Janeway

2014-10-15T23:59:59.000Z

95

FUNCTIONAL GENOMICS Program of Study  

E-Print Network [OSTI]

FUNCTIONAL GENOMICS Program of Study Research Areas Students Applying Correspondence Graduate Genomics. Students receive training in the biological, physical and computational sciences through of primary institutional affiliation. The Functional Genomics program is administered through the Graduate

Thomas, Andrew

96

DOE JGI Whole Genome Shotgun Sequencing, part 1  

ScienceCinema (OSTI)

A Howard Hughes Medical Institute (HHMI) video production describing the Whole Genome Shotgun Sequencing process at the US Department of Energy's Joint Genome Institute (JGI).

Miranda Harmon-Smith

2010-09-01T23:59:59.000Z

97

DOE - Office of Legacy Management -- Dow Chemical Co - Walnut Creek - CA 02  

Office of Legacy Management (LM)

Dow Chemical Co - Walnut Creek - CA Dow Chemical Co - Walnut Creek - CA 02 FUSRAP Considered Sites Site: Dow Chemical Co. - Walnut Creek (CA.02 ) Eliminated from consideration under FUSRAP Designated Name: Not Designated Alternate Name: None Location: 2800 Mitchell Drive , Walnut Creek , California CA.02-1 Evaluation Year: 1987 CA.02-2 CA.02-3 Site Operations: From 1947 to 1957, conducted process studies and experimental investigations on different uranium and thorium-bearing ores; pilot-scale solvent extraction of uranium from phosphoric acid; liquid waste disposal studies CA.02-1 CA.02-4 CA.02-5 Site Disposition: Eliminated - Radiation levels below criteria CA.02-6 CA.02-7 Radioactive Materials Handled: Yes Primary Radioactive Materials Handled: Uranium, Thorium CA.02-1 CA.02-4

98

Genomic Encyclopedia of Fungi  

SciTech Connect (OSTI)

Genomes of fungi relevant to energy and environment are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 150 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such parts suggested by comparative genomics and functional analysis in these areas are presented here.

Grigoriev, Igor

2012-08-10T23:59:59.000Z

99

Tapping the Molecular Potential of Microalgae to Produce Biomass (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

ScienceCinema (OSTI)

Richard Sayre, from Los Alamos National Laboratory, presents a talk titled "Tapping the Molecular Potential of Microalgae to Produce Biomass" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Sayre, Richard [LANL

2013-01-22T23:59:59.000Z

100

Sequencing the Rice Genome  

Science Journals Connector (OSTI)

...University of Delhi and Nagendra Singh of the Indian Agricultural Research Institute) and...representing a single contig. On this point, Sasaki presented evidence from the RGP...ncgr.ac.cn/index.html Indian Rice Genome Program (University of Delhi...

Nancy A. Eckardt

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


101

Methods in comparative genomics: genome correspondence, gene identification and motif discovery  

E-Print Network [OSTI]

1 Methods in comparative genomics: genome correspondence, gene identification and motif discovery@mit.edu, nickp@genome.wi.mit.edu, bwb@genome.wi.mit.edu, bab@mit.edu, lander@wi.mit.edu (1) MIT/Whitehead Institute Center for Genome Research, 320 Charles St., Cambridge MA 02139 (2) MIT Computer Science

Kellis, Manolis

102

In Situ Expression of Acidic and Thermophilic Carbohydrate Active Enzymes by Filamentous Fungi (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

ScienceCinema (OSTI)

Annika Mosier, graduate student from Stanford University presents a talk titled "In Situ Expression of Acidic and Thermophilic Carbohydrate Active Enzymes by Filamentous Fungi" at the JGI User 7th Annual Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, Calif

Mosier, Annika [Stanford University

2013-01-22T23:59:59.000Z

103

Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

ScienceCinema (OSTI)

N. Louise Glass from the University of California, Berkeley, presents a talk titled "Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

Glass, N Louise [UC Berkeley

2013-01-25T23:59:59.000Z

104

Hindawi Publishing Corporation Comparative and Functional Genomics  

E-Print Network [OSTI]

Hindawi Publishing Corporation Comparative and Functional Genomics Volume 2007, Article ID 47304, 7 pages doi:10.1155/2007/47304 Meeting Report eGenomics: Cataloguing Our Complete Genome Collection III, Michigan State University, East Lansing, MI 48824, USA 3 The Institute for Genomic Research, 9712 Medical

Newcastle upon Tyne, University of

105

Abstract SY36-01: Functional genomics and cancer dependencies  

Science Journals Connector (OSTI)

...CA Abstract SY36-01: Functional genomics and cancer dependencies William C. Hahn...Institute, Boston, MA. Recent advances in genomics continue to elucidate the genetic lesions...Format: William C. Hahn. Functional genomics and cancer dependencies. [abstract...

William C. Hahn

2014-10-01T23:59:59.000Z

106

Chlamydomonas reinhardtii at the Crossroads of Genomics  

Science Journals Connector (OSTI)

...55108 4 Department of Energy, Joint Genome Institute...with light as a sole energy source (photoautotrophic...production of clean, solar-generated energy in the form of H2, and...59). Ongoing genome projects offer the scientific...

Arthur R. Grossman; Elizabeth E. Harris; Charles Hauser; Paul A. Lefebvre; Diego Martinez; Dan Rokhsar; Jeff Shrager; Carolyn D. Silflow; David Stern; Olivier Vallon; Zhaoduo Zhang

2003-12-01T23:59:59.000Z

107

THE CAMPAIGN FOR UC SANTA CRUZ THE GENOMICS  

E-Print Network [OSTI]

THE CAMPAIGN FOR UC SANTA CRUZ THE GENOMICS INSTITUTE #12;OVERVIEW The UC Santa Cruz Genomics Institute provides the framework for the next great leap in the science of genomics. ensured it would genomic science and speed the benefits of discoveries that improve and save lives. Cancer, autoimmune

California at Santa Cruz, University of

108

From genome to proteome: developing expression clone resources for the human genome  

E-Print Network [OSTI]

From genome to proteome: developing expression clone resources for the human genome Gary Temple1 Mammalian Gene Collection, National Human Genome Research Institute and 2 National Center for Biotechnology human genome sequence, it has become possible and highly productive to compare the sequences of m

109

Uptake of Reactive Black 5 by pumice and walnut activated carbon: Chemistry and adsorption mechanisms  

Science Journals Connector (OSTI)

Abstract The potential of using pumice and walnut wood activated carbon as low-cost adsorbents for the removal of the diazo dye Reactive Black 5 (RB5) from aqueous solutions was investigated. The Langmuir isotherm fit to the data specified the presence of two different natures of adsorption sites with different binding energies on the AC-W surface. Kinetic modelling showed that the adsorption behaviour and mechanism of RB5 for both adsorbents is believed to happen via surface adsorption followed by diffusion into the pores of the AC-W and pumice. The main adsorption mechanisms are hydrogen bonding, electrostatic bonding and n–? interactions.

Behzad Heibati; Susana Rodriguez-Couto; Abdeltif Amrane; Mohd. Rafatullah; Alaa Hawari; Mohammad A. Al-Ghouti

2014-01-01T23:59:59.000Z

110

Demand Management Institute (DMI) | Open Energy Information  

Open Energy Info (EERE)

Demand Management Institute (DMI) Demand Management Institute (DMI) Jump to: navigation, search Name Demand Management Institute (DMI) Address 35 Walnut Street Place Wellesley, Massachusetts Zip 02481 Sector Buildings Product Provides analysis for buildings on reducing energy use Website http://www.dmiinc.com/ Coordinates 42.3256508°, -71.2530294° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":42.3256508,"lon":-71.2530294,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

111

Department of Population Health Sciences, University of Wisconsin-Madison 610 Walnut Street, 707 WARF, Madison, WI 53726-2397  

E-Print Network [OSTI]

Department of Population Health Sciences, University of Wisconsin-Madison 610 Walnut Street, 707://www.pophealth.wisc.edu UNIVERSITY OF WISCONSIN-MADISON SCHOOL OF MEDICINE AND PUBLIC HEALTH The Philip M. Farrell Population Health Distinguished Alumni Lecture Ann P. O'Rourke, MD, MPH Assistant Professor Surgical Critical Care Director

Scharer, John E.

112

Meeting report The changing face of genomics  

E-Print Network [OSTI]

this technology into studying transcriptional regulator binding in the human genome, with applicationsMeeting report The changing face of genomics Manolis Kellis Address: The Broad Institute AGBT / AMS meeting on Advances in Genome Biology & Technology Marco Island, Florida, USA, February 4

Kellis, Manolis

113

Structural Genomics  

Science Journals Connector (OSTI)

Structural Genomics ... Structural genomics is the field of science focused on the systematic determination of the three-dimensional structure of the proteins encoded into genomes. ... Structural genomics is spreading the philosophy of high throughput in all fields of science and making available new tools to speed up research procedures. ...

Ivano Bertini

2003-03-01T23:59:59.000Z

114

Discovering Geometric Patterns in Genomic Data Wenxuan Gao  

E-Print Network [OSTI]

Discovering Geometric Patterns in Genomic Data Wenxuan Gao Department of Computer Science University of Illinois at Chicago wgao5@uic.edu Christopher Brown Institute for Genomics & Systems Biology caseybrown@uchicago.edu Robert L. Grossman Institute for Genomics & Systems Biology robert.grossman @uchicago

Grossman, Robert

115

2013 REU Program in Computational Neuropsychiatric Genomics research experiences for undergraduates  

E-Print Network [OSTI]

2013 REU Program in Computational Neuropsychiatric Genomics research experiences for undergraduates University of Illinois at Chicago University of Haifa Harvard Medical School IGSB Institute for Genomics & Systems Biology #12;2013 REU Program in Computational Neuropsychiatric Genomics research experiences

Kemner, Ken

116

2015 REU Program in Computational Neuropsychiatric Genomics research experiences for undergraduates  

E-Print Network [OSTI]

2015 REU Program in Computational Neuropsychiatric Genomics research experiences for undergraduates Harvard Medical School ! IGSB Institute for Genomics & Systems Biology www.contechicago.org #12;2015 REU Program in Computational Neuropsychiatric Genomics research experiences for undergraduates The Conte

Kemner, Ken

117

Functional genomics as a window on radiation stress signaling Sally A Amundson*,1  

E-Print Network [OSTI]

Functional genomics as a window on radiation stress signaling Sally A Amundson*,1 , Michael Bittner 20892, USA; 2 National Human Genome Research Institute, National Institutes of Health, Bethesda, MD before the completion of the human genome draft sequence, a number of techniques for genomic expression

118

Flexibility and Symmetry of Prokaryotic Genome Rearrangement Reveal Lineage-Associated Core-Gene-Defined Genome Organizational Frameworks  

Science Journals Connector (OSTI)

...big.ac.cn . a CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, Peoples Republic of China b College of Computer Science, Sichuan University, Chengdu, Peoples Republic...

Yu Kang; Chaohao Gu; Lina Yuan; Yue Wang; Yanmin Zhu; Xinna Li; Qibin Luo; Jingfa Xiao; Daquan Jiang; Minping Qian; Aftab Ahmed Khan; Fei Chen; Zhang Zhang; Jun Yu

2014-12-01T23:59:59.000Z

119

Ancient genomics  

Science Journals Connector (OSTI)

...2015 review-article PART IV: ANCIENT GENOMICS 1001 70 198 Discussion meeting issue...author and source are credited. Ancient genomics Clio Der Sarkissian Morten E. Allentoft...field of aDNA has entered the new era of genomics and has provided valuable information...

2015-01-01T23:59:59.000Z

120

Influence of solvent on the antioxidant and antimicrobial properties of walnut (Juglans regia L.) green husk extracts  

Science Journals Connector (OSTI)

Walnut green husk is an agro-forest waste generated in the walnut (Juglans regia L.) harvest that could be valued as a source of natural compounds with antioxidant and antimicrobial properties. At this respect, the effect of the solvent (water, methanol, ethanol and 50% aqueous solutions of methanol and ethanol) on the extraction yields and extracts bioactive properties was analysed. Total phenols content of the extracts was determined by the Folin–Ciocalteau method. Extract antioxidant activity was evaluated using the reducing power assay and by the ability of the extracts to scavenge the DPPH radical. The scavenging effect of the aqueous extracts on the nitric oxide radical was also evaluated. The highest extraction yield was achieved with water (44.11%) and high bioactive potential was shown by the samples extracted with water/ethanol (1:1) (84.46 mg GAE/g extract; EC50 = 0.95 mg/mL for reducing power and EC50 = 0.33 mg/mL for DPPH assay). All the antioxidant properties analysed showed a concentration-dependent activity. The antimicrobial activity of the aqueous extracts was assessed and showed ability to inhibit the growth of Gram positive bacteria. The results obtained demonstrated the potential of the walnut green husk as an economical source of antioxidant and antimicrobial agents.

A. Fernández-Agulló; E. Pereira; M.S. Freire; P. Valentão; P.B. Andrade; J. González-Álvarez; J.A. Pereira

2013-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


121

Genome duplications (polyploidy) / ancientGenome duplications (polyploidy) / ancient genome duplications (genome duplications (paleopolyploidypaleopolyploidy))  

E-Print Network [OSTI]

Genome duplications (polyploidy) / ancientGenome duplications (polyploidy) / ancient genome duplications (genome duplications (paleopolyploidypaleopolyploidy)) Mechanism? e.g. a diploid cell undergoes;Paramecium genome duplicationsParamecium genome duplications #12;Comparison of two scaffolds originating from

Utrecht, Universiteit

122

56th and Walnut: A Philly Gut Rehab Development; Philadelphia, Pennsylvania (Fact Sheet)  

SciTech Connect (OSTI)

Load-bearing brick-masonry multifamily buildings are prevalent in urban areas across much of the Northeast and mid-Atlantic. In most instances, these buildings are un-insulated unless they have been renovated within the past two decades. Affordable housing capital budgets typically limit what can be spent and energy improvements often take a back seat to basic capital improvements such as interior finish upgrades and basic repairs. The Consortium for Advanced Residential Buildings (CARB) is researching cost effective solution packages for significant energy efficiency and indoor air-quality improvements in these urban buildings. To explore how these low-cost retrofits can effectively integrate energy efficiency upgrades, CARB partnered with Columbus Property Management and Development, Inc. on a community-scale gut rehabilitation project located at 56th Street and Walnut Street in Philadelphia, consisting of 32 units in eleven 3-story buildings. These buildings were built in the early 1900s using stone foundations and solid brick-masonry walls. They were renovated in the 1990s to have interior light gauge metal framing with R-13 batt in the above-grade walls, induced-draft furnaces, and central air conditioning.

Not Available

2013-11-01T23:59:59.000Z

123

Institutional INSTITUTIONAL DATA BOOK  

E-Print Network [OSTI]

that institutions provide for their learning and personal development. The University of Minnesota is an equal ORGANIZATIONAL STRUCTURE UMM Organizational Chart as of August 2009

Minnesota, University of

124

Fueling Future with Algal Genomics  

SciTech Connect (OSTI)

Algae constitute a major component of fundamental eukaryotic diversity, play profound roles in the carbon cycle, and are prominent candidates for biofuel production. The US Department of Energy Joint Genome Institute (JGI) is leading the world in algal genome sequencing (http://jgi.doe.gov/Algae) and contributes of the algal genome projects worldwide (GOLD database, 2012). The sequenced algal genomes offer catalogs of genes, networks, and pathways. The sequenced first of its kind genomes of a haptophyte E.huxleyii, chlorarachniophyte B.natans, and cryptophyte G.theta fill the gaps in the eukaryotic tree of life and carry unique genes and pathways as well as molecular fossils of secondary endosymbiosis. Natural adaptation to conditions critical for industrial production is encoded in algal genomes, for example, growth of A.anophagefferens at very high cell densities during the harmful algae blooms or a global distribution across diverse environments of E.huxleyii, able to live on sparse nutrients due to its expanded pan-genome. Communications and signaling pathways can be derived from simple symbiotic systems like lichens or complex marine algae metagenomes. Collectively these datasets derived from algal genomics contribute to building a comprehensive parts list essential for algal biofuel development.

Grigoriev, Igor

2012-07-05T23:59:59.000Z

125

Comparative genomics and genome evolution in yeasts  

Science Journals Connector (OSTI)

...Sternberg and Janet Thornton Comparative genomics and genome evolution in yeasts Kenneth...powerful model system for comparative genomics research. The availability of multiple...cerevisiae |evolution|bioinformatics|genomics| 1. Introduction The rationale put...

2006-01-01T23:59:59.000Z

126

Engineering Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Institute Engineering Institute Engineering dynamics that include flight, vibration isolation for precision manufacturing, earthquake engineering, blast loading, signal processing,...

127

Reconstructing large regions of an ancestral mammalian genome in silico  

E-Print Network [OSTI]

of California, Santa Cruz, California 95064, USA; 2 National Human Genome Research Institute, National.ucsc.edu/ancestors.] Following completion of the human genome sequence, there is now considerable interest in obtaining a more comprehensive understanding of its evolution (International Human Genome Sequencing Consortium [IHGSC] 2001

Miller, Webb

128

Potential of metabolomics as a functional genomics tool  

E-Print Network [OSTI]

Potential of metabolomics as a functional genomics tool Raoul J. Bino1,2,3 , Robert D. Hall2 3 Centre for BioSystems Genomics, POB 98, 6700 AB Wageningen, The Netherlands 4 Max-Planck Institute Australian Centre for Plant Functional Genomics, School of Botany, University of Melbourne, Victoria 3010

Wurtele, Eve Syrkin

129

Genome Biology 2004, 5:R92 commentreviewsreportsdepositedresearchrefereedresearchinteractionsinformation  

E-Print Network [OSTI]

Federal Institute of Technology (ETH), Zurich. Colab, ETH, Zurich 8092, Switzerland. Seminar for Statistics, ETH, Zurich 8092, Switzerland. §Institute for Plant Sciences and Functional Genomics Center Zurich, ETH, Zurich 8092, Switzerland. ¶Computer Engineering and Networks Laboratory, ETH, Zurich 8092

Zitzler, Eckart

130

Enhancing a Genome Database Using the XSB Tabled Logic Programming System  

E-Print Network [OSTI]

goal of the Human Genome Project 1] is to construct detailed physical maps of the human genome implementationof laboratory information systems developed at the Center for Genome Research in the Whitehead Research at the Whitehead Institute in MIT is engaged in several large-scale genome mapping projects

Davulcu, Hasan

131

Building on a Decade of Accomplishments Report of the 2010 Blue Ribbon Panel on Genomics  

E-Print Network [OSTI]

Building on a Decade of Accomplishments Report of the 2010 Blue Ribbon Panel on Genomics Division of Microbiology and Infectious Diseases, Genomics Programs National Institute of Allergy and Infectious Diseases Blue Ribbon Panel on Genomics Division of Microbiology and Infectious Diseases, Genomics Programs

Levin, Judith G.

132

Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark  

E-Print Network [OSTI]

Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark Burkholderia Pan-genomics Dave Ussery Max Planck Institut fur Terrestrial Microbiology Marburg, Germany 26 May, 2008 - or - What can we learn from more than 50 sequenced genomes? #12;Comparative Microbial Genomics

Ussery, David W.

133

Fungal Genomics Program  

E-Print Network [OSTI]

strains Comparative genomics and transcriptomics of xyloseFungal Genomics Program Igor Grigoriev 1 * (complex communities Fungal Genomics Program Igor Grigoriev

Grigoriev, Igor

2012-01-01T23:59:59.000Z

134

NMR and Structural Genomics  

Science Journals Connector (OSTI)

NMR and Structural Genomics ... The role of NMR in structural genomics is outlined, with particular emphasis on using protein domains as targets. ... Targets in Structural Genomics ...

David Staunton; Jo Owen; Iain D. Campbell

2002-12-07T23:59:59.000Z

135

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network [OSTI]

and Outreach Safety and Ergonomics Appendices Appendix A:QA, Instrumenta- tion, Ergonomics, Informatics) in the pastReport 2008 safety and ergonomics Safety is a core value of

Gilbert, David

2009-01-01T23:59:59.000Z

136

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network [OSTI]

digestion, could produce biogas—primarily methane and carbongasoline per day. When biogas is cleaned of its particulates

Gilbert, David

2009-01-01T23:59:59.000Z

137

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network [OSTI]

energy strategies, biomass conversion to biofuels, environ-the efficiency of the conversion of biomass to fuels. JGImore economi- cal conversion of biomass from such feedstocks

Gilbert, David

2009-01-01T23:59:59.000Z

138

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network [OSTI]

producing microbial “subsamples” highly enriched for organisms that could metabo- lize methane, methanol,

Gilbert, David

2009-01-01T23:59:59.000Z

139

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network [OSTI]

hemicellulose and lignin. ” Bio- fuels researchers are ableatmosphere when burned, but bio- fuels only release carbonenvironmentally sustainable bio- fuel crop than corn and

Gilbert, David

2009-01-01T23:59:59.000Z

140

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network [OSTI]

possible to produce ethanol from cellulose on an industrialof breaking down cellulose into ethanol, considered by someof cellulosic ethanol, carbohydrate polymers (cellulose and

Gilbert, David

2009-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


141

Genome Analyses and Supplement Data from the International Populus Genome Consortium (IPGC)  

DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

The sequencing of the first tree genome, that of Populus, was a project initiated by the Office of Biological and Environmental Research in DOE’s Office of Science. The International Populus Genome Consortium (IPGC) was formed to help develop and guide post-sequence activities. The IPGC website, hosted at the Oak Ridge National Laboratory, provides draft sequence data as it is made available from DOE Joint Genome Institute, genome analyses for Populus, lists of related publications and resources, and the science plan. The data are available at http://www.ornl.gov/sci/ipgc/ssr_resource.htm.

International Populus Genome Consortium (IPGC)

142

CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun  

E-Print Network [OSTI]

Chatterji1 , Ichitaro Yamazaki2 , Zhaojun Bai2 , and Jonathan A. Eisen1,3 1 Genome Center, U C Davis, Davis, Davis CA 95616, USA yamazaki@cs.ucdavis.edu,bai@cs.ucdavis.edu 3 The Joint Genome Institute, Walnut training on known reference genomes, Com- postBin has the ability to accurately bin raw sequence reads

Bai, Zhaojun

143

JGI Genomics and Bioinformatics for Undergraduate Educators Workshop |  

Broader source: Energy.gov (indexed) [DOE]

JGI Genomics and Bioinformatics for Undergraduate Educators JGI Genomics and Bioinformatics for Undergraduate Educators Workshop JGI Genomics and Bioinformatics for Undergraduate Educators Workshop March 23, 2013 3:00PM EDT to March 26, 2013 6:00PM EDT University of California The JGI will be holding the JGI Genomics and Bioinformatics for Undergraduate Educators Workshop in conjunction with the JGI User Meeting. The workshop will take place March 23-26, 2013 at the JGI. The DOE Joint Genome Institute's Education Program is providing opportunities for colleges and universities across the country to "interpret" bacterial genomes, such as those sequenced as part of the GEBA project, for analysis. This "Interpret a GEBA Genome" Education Program makes available a selection of recently sequenced genomes

144

UCSC cancer genomics browser.  

Science Journals Connector (OSTI)

...Chicago, IL Abstract 5087: UCSC Cancer Genomics Browser 2.0 Jingchun Zhu 1 Brian Craft...and analyze that data. The UCSC Cancer Genomics Browser (https://genome-cancer...enhances the interpretability of the cancer genomics information. UCSC Cancer Genomics Browser...

J Zhu; JZ Sanborn; T Wang; F Hsu; S Benz; C Szeto; L Esserman; D Haussler

2009-01-15T23:59:59.000Z

145

Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum  

Science Journals Connector (OSTI)

...Celine Brochier, Asuncion Martinez, Tsultrim Palden, Tracy Mincer, Matthew Sullivan, Maureen Coleman, Jarod Chapman, Sam Pitluck, Chris Detter, Krishna Palaniappan, and the Joint Genome Institute staff for computational and technical assistance. J...

Steven J. Hallam; Konstantinos T. Konstantinidis; Nik Putnam; Christa Schleper; Yoh-ichi Watanabe; Junichi Sugahara; Christina Preston; José de la Torre; Paul M. Richardson; Edward F. DeLong

2006-01-01T23:59:59.000Z

146

A Celebration of The Genome, 1953-2003  

Office of Scientific and Technical Information (OSTI)

Celebration of The Genome, 1953-2003 This April Join the National Institutes of Health and the Department of Energy in a month-long series of scientific, educational, cultural and...

147

Operational streamlining in a high-throughput genome sequencing center  

E-Print Network [OSTI]

Advances in medicine rely on accurate data that is rapidly provided. It is therefore critical for the Genome Sequencing platform of the Broad Institute of MIT and Harvard to continually strive to reduce cost, improve ...

Person, Kerry P. (Kerry Patrick)

2006-01-01T23:59:59.000Z

148

Genomic Potential of Marinobacter aquaeolei, a Biogeochemical “Opportunitroph”  

Science Journals Connector (OSTI)

...51). They rapidly exploit nutrient patches and die or become dormant after substrate...annotated by the Joint Genome Institute pipeline using three gene finders, Critica (version...yellow, replication, recombination, and repair; purple, general function prediction...

Esther Singer; Eric A. Webb; William C. Nelson; John F. Heidelberg; Natalia Ivanova; Amrita Pati; Katrina J. Edwards

2011-02-18T23:59:59.000Z

149

Landscape evolutionary genomics  

Science Journals Connector (OSTI)

...1001 60 70 129 Landscape evolutionary genomics David B. Lowry * * davidbryantlowry...com University Program in Genetics and Genomics, , Box 3565 Duke University Medical...genetics|adaptation|landscape ecology|genomics|natural selection|GIS| 1. Introduction...

2010-01-01T23:59:59.000Z

150

The Human Genome From human genome to other  

E-Print Network [OSTI]

genome to health Structural Genomics initiative #12;What is the Human Genome Project? · U.S. govtThe Human Genome Project From human genome to other genomes and to gene function June 2000 From that arise from genome research #12;The Human Genome Project Project began in 1990 as a $3 billion, 15-year

Linial, Michal

151

Microsoft PowerPoint - Microbial Genome and Metagenome Analysis Case Study (NERSC Workshop - May 7-8, 2009).ppt [Compatibility  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Genome & Genome & Metagenome Analysis: Computational Challenges Natalia N. Ivanova * Nikos C. Kyrpides * Victor M. Markowitz ** * Genome Biology Program, Joint Genome Institute ** Lawrence Berkeley National Lab Microbial genome & metagenome analysis General aims Understand microbial life Apply to agriculture, bioremediation, biofuels, human health Specific aims include Specific aims include Predict biochemistry & physiology of organisms based on genome sequence Explain known biochemical & physiological properties Metabolic reconstruction * Ivanova & Lykidis (2009) Metabolic reconstruction. Encyclopedia of Microbiology, Elsevier: 607-621. 2 Genome sequence data size Now ~1,400 microbial genomes = 5.5 mil genes ~ 100 metagenomes samples

152

Improved Yield and Diverse Finished Bacterial Genomes using Pacific Biosciences RS II SMRT Sequencing  

E-Print Network [OSTI]

Improved Yield and Diverse Finished Bacterial Genomes using Pacific Biosciences RS II SMRT-Cruz, Alvaro Godinez, Luke J. Tallon Institute for Genome Sciences, University of Maryland School of Medicine, effective, and highly accurate platform for generation of complete microbial genome sequences. As early

Weber, David J.

153

Integrating population genetics and conservation biology in the era of genomics  

Science Journals Connector (OSTI)

...and conservation biology in the era of genomics N. Joop Ouborg * * j.ouborg@science...Department of Molecular Ecology and Ecological Genomics, Institute for Water and Wetland Research...genetics is evolving into conservation genomics, while at the same time basic and applied...

2010-01-01T23:59:59.000Z

154

Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets  

E-Print Network [OSTI]

of the software infrastructure required. Results Bionimbus is used by a variety of projects to process genomicsBionimbus: a cloud for managing, analyzing and sharing large genomics datasets Allison P Heath,1 Megan E McNerney,1,2 Kevin P White,1,3,4 Robert L Grossman1,3,5 1 Institute for Genomics and Systems

Grossman, Robert

155

Complete Genome Sequence of the hyperthermophilic sulfate-reducing bacterium Thermodesulfobacterium geofontis OPF15T  

SciTech Connect (OSTI)

Thermodesulfobacterium geofontis OPF15T was isolated from Obsidian Pool, Yellowstone National Park and grows optimally at 83 oC. The OPF15T genome was finished at the Joint Genome Institute and the 1.6 Mb sequence has been annotated and deposited for future genomic studies aimed at understanding microbial processes and nutrient cycles in high-temperature environments.

Elkins, James G [ORNL; Hamilton-Brehm, Scott [ORNL; Walston Davenport, Karen [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Meincke, Linda [Los Alamos National Laboratory (LANL); Detter, J C [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Cottingham, Robert W [ORNL

2013-01-01T23:59:59.000Z

156

Comparative Genomics of Transcriptional Control in the Human Malaria Parasite Plasmodium falciparum  

E-Print Network [OSTI]

Comparative Genomics of Transcriptional Control in the Human Malaria Parasite Plasmodium falciparum Richard M.R. Coulson,1,3 Neil Hall,2 and Christos A. Ouzounis1 1 Computational Genomics Group10 1SD, United Kingdom; 2 The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus

Arnold, Jonathan

157

Engineering Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Engineering Institute Engineering Institute Engineering Institute Engineering dynamics that include flight, vibration isolation for precision manufacturing, earthquake engineering, blast loading, signal processing, and experimental model analysis. Contact Leader, LANL Charles Farrar Email Leader, UCSD Michael Todd Email LANL Program Administrator Jutta Kayser (505) 663-5649 Email Collaboration for conducting mission-driven, multidisciplinary engineering research and recruiting, revitalization, and retention of current & future staff The Engineering Institute is a collaboration between LANL and the University of California at San Diego (UCSD) Jacobs School of Engineering, whose mission is to develop a comprehensive approach for conducting mission-driven, multidisciplinary engineering research

158

Personal Genomics, Personalized Medicine,  

E-Print Network [OSTI]

Personal Genomics, Personalized Medicine, & YOU Carrie Iwema, PhD, MLS 21st May 2012 AAAS/Science Translational Medicine panel discussion; MLA 2012 #12;Timeline: Human Genome Sequence HSLS, U.Pitt 1995 2014 2000 2003 2007 2007 2010 Human Genome Draft Sequence Complete Human Reference Genome Individual Human

Napp, Nils

159

Institutional Controls  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Institutional Controls Institutional Controls Many major Federal laws (e.g., Atomic Energy Act (AEA), Resource Conservation Recovery Act (RCRA), Comprehensive Environmental Response, Compensation and Liability Act (CERCLA)), Executive Orders, regulations and various other drivers influence the use of institutional controls at DOE sites. Some drivers directly authorize or require the use of institutional controls, while others do not. DOE also uses institutional controls when no specific statutory requirement exists to supplement active remediation, pollution control, public and resource protection, and physical security, or to bolster the integrity of engineered remedies. DOE and its predecessor agencies have conducted activities for over 50 years, using land ownership and access control, environmental monitoring and surveillance, and other tools to support protection efforts at operational and inactive facilities, including radioactive waste burial grounds.

160

Complete genome sequence of Methanoculleus marisnigri type strain JR1  

SciTech Connect (OSTI)

Methanoculleus marisnigri Romesser et al. 1981 is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain, JR1, was isolated from anoxic sediments of the Black Sea. M. marisnigri is of phylogenetic interest because at the time the sequencing project began only one genome had previously been sequenced from the order Methanomicrobiales. We report here the complete genome sequence of M. marisnigri type strain JR1 and its annotation. This is part of a Joint Genome Institute 2006 Community Sequencing Program to sequence genomes of diverse Archaea.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Sieprawska-Lupa, Magdalena [University of Georgia, Athens, GA; Goltsman, Eugene [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Barry, Kerrie [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Brettin, Tom [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Hauser, Loren John [ORNL; Land, Miriam L [ORNL; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Whitman, W. B. [University of Georgia, Athens, GA; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute

2009-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


161

Complete genome sequence of Methanocorpusculum labreanum type strain Z  

SciTech Connect (OSTI)

Methanocorpusculum labreanum is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain Z was isolated from surface sediments of Tar Pit Lake in the La Brea Tar Pits in Los Angeles, California. M. labreanum is of phylogenetic interest because at the time the sequencing project began only one genome had previously been sequenced from the order Methanomicrobiales. We report here the complete genome sequence of M. labreanum type strain Z and its annotation. This is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Sieprawska-Lupa, Magdalena [University of Georgia, Athens, GA; Goltsman, Eugene [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Barry, Kerrie [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Hauser, Loren John [ORNL; Land, Miriam L [ORNL; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Whitman, W. B. [University of Georgia, Athens, GA; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute

2009-01-01T23:59:59.000Z

162

Microsoft Word - draft2008JGIabstracts.doc  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Third Annual Third Annual DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 26-28, 2008 Marriott Hotel Walnut Creek, California iii Contents Agenda ............................................................................iv Speaker Presentations.................................................... 1 Poster Presentations ..................................................... 11 Attendees ....................................................................... 53 Author Index................................................................. 59 iv Agenda All functions to be held at the Walnut Creek Marriott unless otherwise noted WEDNESDAY, March 26 Start Time End Time Subject Session Chair/Speaker 8:30 AM Registration Opens

163

Defining Genome Project Standards in a New Era of Sequencing (GSC8 Meeting)  

ScienceCinema (OSTI)

The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego.

Chain, Patrick [DOE JGI

2011-04-28T23:59:59.000Z

164

Diversity and heritability of the maize rhizosphere microbiome under field conditions  

E-Print Network [OSTI]

, NY 14853; d Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598; and e Howard Department of Microbiology and Immunology, Carolina Center for Genome Sciences, University of North Carolina. The plant, in turn, cultivates its microbiome by adjusting the soil pH, reducing competition for beneficial

Dangl, Jeff

165

Hamilton Eye Institute Neuroscience Institute  

E-Print Network [OSTI]

Care Neonatology & Maternal Fetal Pediatric Heart Institute Steve J. Schwab, MD Musculoskeletal A New of Radiology · Mari Assumes Leadership of OB/GYN city attractioNs Levitt Shell Revived Feature Vision

Cui, Yan

166

Quantum Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Quantum Institute Quantum Institute Quantum Institute A new research frontier awaits! Our door is open and we thrive on mutually beneficial partnerships, collaborations that drive innovations and new technologies. Contact Leader Malcolm Boshier (505) 665-8892 Email Two of LANL's most successful quantum technology initiatives: quantum cryptography and the race for quantum computer The area of quantum information, science, and technology is rapidly evolving, with important applications in the areas of quantum cryptography, quantum computing, quantum metrology, and advanced quantum-based sensors, some of which are directly relevant to the Laboratory's national security mission. Mission Foster a vigorous intellectual environment at LANL Define and develop strategic thrusts Target and pursue funding opportunities

167

The genomics of adaptation  

Science Journals Connector (OSTI)

...introduction Special feature 1001 70 197 198 The genomics of adaptation Jacek Radwan 1 * Wieslaw...One contribution to a Special Feature Genomics of adaptation. The amount and nature...aspects of the broad field of adaptation genomics. This introductory article sets up a...

2012-01-01T23:59:59.000Z

168

Genomics of human longevity  

Science Journals Connector (OSTI)

...the original work is properly cited. Genomics of human longevity P. E. Slagboom 1...progress. human longevity|longevity genomics|epigenetics and ageing| 1. Introduction...Innovation Oriented Research Programme on Genomics (SenterNovem; IGE01014 and IGE5007...

2011-01-01T23:59:59.000Z

169

Dissecting biological ``dark matter'' with single-cell genetic analysis of rare and uncultivated TM7  

E-Print Network [OSTI]

of Energy Joint Genome Institute, Walnut Creek, CA 94598 Communicated by Leroy E. Hood, Institute, we have only scratched the surface of this microbial world. It has been estimated that 1 of species present requires substantial reagent consumption and expensive postamplification screening

Quake, Stephen R.

170

Genomic Science | U.S. DOE Office of Science (SC)  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Biological Biological Systems Science Division (BSSD) » Genomic Science Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building

171

Complete genome sequence of Ferroglobus placidus AEDII12DO  

SciTech Connect (OSTI)

Ferroglobus placidus belongs to the order Archaeoglobales within the archaeal phylum Euryar- chaeota. Strain AEDII12DO is the type strain of the species and was isolated from a shallow marine hydrothermal system at Vulcano, Italy. It is a hyperthermophilic, anaerobic chemoli- thoautotroph, but it can also use a variety of aromatic compounds as electron donors. Here we describe the features of this organism together with the complete genome sequence and anno- tation. The 2,196,266 bp genome with its 2,567 protein-coding and 55 RNA genes was se- quenced as part of a DOE Joint Genome Institute Laboratory Sequencing Program (LSP) project.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Risso, Carla [University of Massachusetts, Amherst; Holmes, Dawn [University of Massachusetts, Amherst; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Thomas S [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Lovley, Derek [University of Massachusetts, Amherst; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

172

Genomics and Systems Biology  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Genomics and Systems Biology Genomics and Systems Biology Genomics and Systems Biology Los Alamos scientists perform research in functional genomics and structural genomics, and applications for such work cover diverse fields such as energy, agriculture, and environmental cleanup. Get Expertise Babetta Marrone Biofuels Program Manager Email Cheryl Kuske DOE BER Biological System Science Division Program Manager Email Chris Detter Emerging Threats Program Manager: Email Rebecca McDonald Bioscience Communications Email "We were asked to build a rocket ship," said developer Joel Berendzen, "but instead we built a 10,000 mph motorcycle." - Sequedex team LANL leads the world in computational finishing of microbial genomes Protein research Read caption + In 2013, Los Alamos scientist Richard Sayre and his team genetically

173

Walnut Street Sansom Street  

E-Print Network [OSTI]

38thStreet 37thStreet 36thStreet 34thStreet 33rdStreet 32ndStreet 39thStreet 40thStreet 30th 220 M34 Dietrich Graduate Library 312, 313 N32 Dunning Coaches' Center 105, 106 P36 Fagin Hall M14, M Writers 3537 Van Pelt-Dietrich Jaffe 133 MCEAS Hayden 1958 Dunning Towne Cohen College Hall Silverman

Sharp, Kim

174

Querying genomic databases  

SciTech Connect (OSTI)

A natural-language interface has been developed that retrieves genomic information by using a simple subset of English. The interface spares the biologist from the task of learning database-specific query languages and computer programming. Currently, the interface deals with the E. coli genome. It can, however, be readily extended and shows promise as a means of easy access to other sequenced genomic databases as well.

Baehr, A.; Hagstrom, R.; Joerg, D.; Overbeek, R.

1991-09-01T23:59:59.000Z

175

Phylogenetic Inference Using Whole Genomes  

E-Print Network [OSTI]

Phylogenetic Inference Using Whole Genomes Bruce Rannala1 and Ziheng Yang2 1 Genome Center.yang@ucl.ac.uk Annu. Rev. Genomics Hum. Genet. 2008. 9:217­31 First published online as a Review in Advance on June 3, 2008 The Annual Review of Genomics and Human Genetics is online at genom.annualreviews.org This article

176

Genome Science/Technologies  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Science & Innovation » Science & Innovation » Science & Engineering Capabilities » Bioscience: Bioenergy, Biosecurity, and Health » Environmental Microbiology » Genome Genome Science/Technologies Los Alamos using cutting-edge sequencing, finishing, and analysis, impact valuable genomic data. Get Expertise Cheryl Kuske DOE BER Biological System Science Division Program Manager Email Srinivas Iyer Bioscience Group Leader Email Momchilo Vuyisich Bioenergy and Biomedical Sciences Email Rebecca McDonald Bioscience Communications Email State-of-the art technology and extensive genomics expertise Protein research Read caption + Los Alamos National Laboratory graduate student, Patricia Langan, changes the properties of a green fluorescent protein in order to create new fluorescent protein variants.

177

Fungal Genomics Program  

SciTech Connect (OSTI)

The JGI Fungal Genomics Program aims to scale up sequencing and analysis of fungal genomes to explore the diversity of fungi important for energy and the environment, and to promote functional studies on a system level. Combining new sequencing technologies and comparative genomics tools, JGI is now leading the world in fungal genome sequencing and analysis. Over 120 sequenced fungal genomes with analytical tools are available via MycoCosm (www.jgi.doe.gov/fungi), a web-portal for fungal biologists. Our model of interacting with user communities, unique among other sequencing centers, helps organize these communities, improves genome annotation and analysis work, and facilitates new larger-scale genomic projects. This resulted in 20 high-profile papers published in 2011 alone and contributing to the Genomics Encyclopedia of Fungi, which targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts). Our next grand challenges include larger scale exploration of fungal diversity (1000 fungal genomes), developing molecular tools for DOE-relevant model organisms, and analysis of complex systems and metagenomes.

Grigoriev, Igor

2012-03-12T23:59:59.000Z

178

Webinar: Materials Genome Initative  

Broader source: Energy.gov [DOE]

Audio recording and text version of the Fuel Cell Technologies Office webinar titled "Materials Genome Initiative," originally presented on December 2, 2014.

179

Genome-Scale Identification of Membrane-Associated Human mRNAs  

E-Print Network [OSTI]

-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America, 5 of medicine. Plasma membrane proteins and secreted signaling proteins are candidate targets for monoclonal

Botstein, David

180

California Institute of Technology  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

California Institute of Technology o Ivan Celanovic, Principal Research Scientist, Massachusetts Institute of Technology o Geoffrey Kinsey, Director, Photovoltaic...

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


181

Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic Bacterium Marinitoga piezophila KA3  

SciTech Connect (OSTI)

Marinitoga piezophila KA3 is a thermophilic, anaerobic, chemoorganotrophic, sulfur-reducing bacterium isolated from the Grandbonum deep-sea hydrothermal vent site at the East Pacific Rise (13 degrees N, 2,630-m depth). The genome of M. piezophila KA3 comprises a 2,231,407-bp circular chromosome and a 13,386-bp circular plasmid. This genome was sequenced within Department of Energy Joint Genome Institute CSP 2010.

Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Han, James [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Teshima, Hazuki [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Vannier, Pauline [Ifremer, Plouzane, France; Oger, Phil [University of Lyon, France; Bartlett, Douglas [University of California, San Diego & La Jolla; Noll, Kenneth M [University of Connecticut, Storrs; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Jebbar, Mohamed [Ifremer, Plouzane, France

2012-01-01T23:59:59.000Z

182

Genomic analysis of mouse tumorigenesis  

E-Print Network [OSTI]

The availability of the human and mouse genome sequences has spurred a growing interest in analyzing mouse models of human cancer using genomic techniques. Comparative genomic studies on mouse and human tumors can be ...

Tam, Mandy Chi-Mun

2006-01-01T23:59:59.000Z

183

Genomics of isolation in hybrids  

Science Journals Connector (OSTI)

...edited by Patrik Nosil and Jeffrey L. Feder Genomics of isolation in hybrids Zachariah Gompert...limitations to the study of the speciation genomics. Further progress in understanding the genomics of speciation will require large-scale...

2012-01-01T23:59:59.000Z

184

Towards the Perfect Genome Sequence (Opening Keynote) ( 7th Annual SFAF Meeting, 2012)  

ScienceCinema (OSTI)

George Weinstock, associate director at the Genome Institute at Washington University, delivered the opening keynote "Towards the Perfect Genome Sequence" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Weinstock, George [Washington University

2013-03-22T23:59:59.000Z

185

Institute of Design Institute of Design  

E-Print Network [OSTI]

Institute of Design Institute of Design 350 N. LaSalle St. Chicago, IL 60610 312.595.4900 design The Institute of Design has continuously explored emerg- ing ideas about how design interacts with society languages and use of new media and material. The school was renamed the Institute of Design (ID) in 1944

Heller, Barbara

186

Population genomics of wild and laboratory zebrafish (Danio rerio)  

E-Print Network [OSTI]

, Bangladesh, Department of Zoology, Tribhuvan University, Kathmandu, Nepal, §§Wellcome Trust Sanger Institute zebrafish (Danio rerio) populations occurring in Nepal, India, and Bangladesh, and we genetically compared natural populations of tradi- tional laboratory models, for which a wide array of genomic resources

Bernatchez, Louis

187

Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics  

Science Journals Connector (OSTI)

...technical assistance, and the pilots of the ROV Tiburon and the captain and crew of the R/V Western Flyer. We also thank S. Pitluck and the Joint Genome Institute staff for technical assistance, and W. Ussler and D. Graham, who provided insight and commentary...

Steven J. Hallam; Nik Putnam; Christina M. Preston; John C. Detter; Daniel Rokhsar; Paul M. Richardson; Edward F. DeLong

2004-09-03T23:59:59.000Z

188

Fuzzy Genome Sequence Assembly for Single and Environmental Genomes  

E-Print Network [OSTI]

Fuzzy Genome Sequence Assembly for Single and Environmental Genomes Sara Nasser, Adrienne Breland. Traditional methods obtain a microorganism's DNA by culturing it in- dividually. Recent advances in genomics microbial commu- nities are often very complex with tens and hundreds of species. Assembling these genomes

Nicolescu, Monica

189

COMPUTATIONAL GENOMICS: MAPPING, COMPARISON, AND ANNOTATION OF GENOMES  

E-Print Network [OSTI]

address key issues in the different stages of genome research: planning of a genome sequencing project areas: (1) In relation to the early stages of a genome project, we address physical mapping, and we structure and sequence analysis of orthologous human and mouse genomic regions, and develop ROSETTA

Batzoglou, Serafim

190

Update on Genomic Studies of Algae Paths toward Algal Genomics  

E-Print Network [OSTI]

Update on Genomic Studies of Algae Paths toward Algal Genomics Arthur R. Grossman* The Carnegie of genomic information that is being used to help researchers understand the gene content of organisms, how the expression of genes. In this introductory manuscript, I discuss select algae and how genomics is impacting

191

Human Genome Program  

SciTech Connect (OSTI)

The DOE Human Genome program has grown tremendously, as shown by the marked increase in the number of genome-funded projects since the last workshop held in 1991. The abstracts in this book describe the genome research of DOE-funded grantees and contractors and invited guests, and all projects are represented at the workshop by posters. The 3-day meeting includes plenary sessions on ethical, legal, and social issues pertaining to the availability of genetic data; sequencing techniques, informatics support; and chromosome and cDNA mapping and sequencing.

Not Available

1993-01-01T23:59:59.000Z

192

Genomics and Malaria Control  

Science Journals Connector (OSTI)

...-targeted and human-targeted approaches — but in reality, malaria results from three intimately interacting organisms (Figure 1). Fortunately, genomics-based approaches to malaria offer the strategic advantage of considering all three participants through integrative data sets, allowing us to identify... The genomic sequences of the malarial vector, parasite, and host — the three components of the malarial transmission system — have been known for at least two years. It may be possible to counter the disease by harnessing this genomic information to launch a strategic attack on the parasite during vulnerable stages of its life cycle.

Vernick K.D.; Waters A.P.

2004-10-28T23:59:59.000Z

193

The Center for integrative genomics  

E-Print Network [OSTI]

The Center for integrative genomics Report 2005­2006 #12;Presentation Director's message 4 Scientific advisory committee 6 Organigram of the CIG 7 research The structure and function of genomes and their evolution alexandrereymond ­ Genome structure and expression 10 henrikKaessmann ­ Evolutionary genomics 12

Kaessmann, Henrik

194

Genome mining for methanobactins  

Science Journals Connector (OSTI)

Methanotrophic bacteria have potential as a biological methane sink, and methanobactins are a set of peptides important in regulating this activity. A genome mining study highlights genes involved in methanobactin production, but also suggests that not all methanotrophs have them.

Grace E Kenney; Amy C Rosenzweig

2013-02-26T23:59:59.000Z

195

Annotating individual human genomes  

Science Journals Connector (OSTI)

Advances in DNA sequencing technologies have made it possible to rapidly, accurately and affordably sequence entire individual human genomes. As impressive as this ability seems, however, it will not likely amount to much if one cannot extract meaningful information from individual sequence data. Annotating variations within individual genomes and providing information about their biological or phenotypic impact will thus be crucially important in moving individual sequencing projects forward, especially in the context of the clinical use of sequence information. In this paper we consider the various ways in which one might annotate individual sequence variations and point out limitations in the available methods for doing so. It is arguable that, in the foreseeable future, DNA sequencing of individual genomes will become routine for clinical, research, forensic, and personal purposes. We therefore also consider directions and areas for further research in annotating genomic variants.

Ali Torkamani; Ashley A. Scott-Van Zeeland; Eric J. Topol; Nicholas J. Schork

2011-01-01T23:59:59.000Z

196

Genomic library construction  

SciTech Connect (OSTI)

Compositions and methods for amplifying nucleic acid sequences from a single cell are provided. Compositions and methods for constructing a genomic library from a single cell are also provided.

Church, George M. (Brookline, MA); Zhang, Kun (San Diego, CA)

2011-07-26T23:59:59.000Z

197

Complete genome sequence of Halopiger xanaduensis type strain (SH6T)  

SciTech Connect (OSTI)

Halopiger xanaduensis is the type species of the genus Halopiger and belongs to the euryarchaeal family Halobacteriaceae. H. xanaduensis strain SH-6, which is designated as the type strain, was isolated from the sediment of a salt lake in Inner Mongolia, Lake Shangmatala. Like other members of the family Halobacteriaceae, it is an extreme halophile requiring at least 2.5 M salt for growth. We report here the sequencing and annotation of the 4,355,268 bp genome, which includes one chromosome and three plasmids. This genome is part of a Joint Genome Institute (JGI) Community Sequencing Program (CSP) project to sequence diverse haloarchaeal genomes.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Tindall, Brian [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Han, James [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Teshima, Hazuki [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

198

Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b  

SciTech Connect (OSTI)

Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physicochemical gradient. This genome was sequenced to be a comparative resource for the study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy s (DOE s) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

Vishnivetskaya, T. [University of Tennessee, Knoxville (UTK); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L [ORNL; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Tom [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Kathariou, Sophia [North Carolina State University; Ramaley, Robert F. [University of Nebraska Medical Center; Rodrigues, Debora F. [University of Houston, Houston; Hendrix, Christie [Yellowstone National Park; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; Tiedje, James M. [Michigan State University, East Lansing

2011-01-01T23:59:59.000Z

199

Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b  

SciTech Connect (OSTI)

Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physico-chemical gradient. This genome was sequenced to be a comparative resource for study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy's (DOE) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

Vishnivetskaya, T. [University of Tennessee, Knoxville (UTK); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Thomas S [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Kathariou, Sophia [North Carolina State University; Ramaley, Robert F. [University of Nebraska Medical Center; Rodrigues, Debora F. [University of Houston, Houston; Hendrix, Christie [Yellowstone National Park; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; Tiedje, James M. [Michigan State University, East Lansing

2011-01-01T23:59:59.000Z

200

CURRICULUM VITAE STEVEN JON SEYBOLD  

E-Print Network [OSTI]

-resistant Walnut Rootstocks: Integration of Conventional and Genomic Approaches." USDA National Institute of Food: Applied Science for Improving the Detection Tool for Thousand Cankers Disease." USDA Forest Service, Forest Health Management, Lakewood, CO, and B. H. Aukema, Department of Entomology, University

Ishida, Yuko

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


201

AAAS 2015 Annual Meeting Program  

Science Journals Connector (OSTI)

...Woyke, U.S. Department of Energy Joint Genome Institute, Walnut...of Catalysts for Sustainable Energy Conversion Jens Norskov, Stanford...Man-Made Earthquakes and Energy Development William Savage...Mountain View, CA; Brian Patrick Green, Santa Clara University, CA...

2014-10-24T23:59:59.000Z

202

Institute of Design Institute of Design  

E-Print Network [OSTI]

Institute of Design Institute of Design 350 N. LaSalle St. Chicago, IL 60610 312.595.4900 main 312.595.4906 graduate study information 312.595.4901 fax design@id.iit.edu www.id.iit.edu Dean: Patrick F. Whitney The Institute of Design (ID) is defined by a legacy of experimentation joined with unique academic programs

Heller, Barbara

203

Nucleomorph genomes: structure, function, origin and evolution  

E-Print Network [OSTI]

Nucleomorph genomes: structure, function, origin and evolution John M. Archibald Summary and four genomes--two nuclear genomes, an endosymbiont- derived plastid genome and a mitochondrial genome derived from the host cell. Like mitochondrial and plastid genomes, the genome of the endosymbiont nucleus

Archibald, John

204

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing...  

Energy Savers [EERE]

like corn or wheat) researchers may be able to improve their growth -- or provide better care for them in times of drought. By developing a better understanding of the microbes...

205

Southern Research Institute Visit  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

initiates collaboration between Southern Research Institute(SRI) and LSU CAMD hosted visitors from the Southern Research Institute in Birmingham, Alabama, and researchers from LSU...

206

17784_Tour_Brochure_CR:Layout 1  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

genome of an organism contains all of genome of an organism contains all of its genetic material or DNA, molecules made up of four bases known as A, C, T and G. When scientists sequence the genome, it's like taking apart a puzzle someone else completed to figure out what each section is made up of, and then re-assemble the information so that scientists can understand the big picture. The U.S. Department of Energy Joint Genome Institute has been headquartered in Walnut Creek, California since 1999, sequencing plants, microbes and communities of microbes called metagenomes that are related to the DOE mission areas of bioenergy, the carbon cycle and biogeochemistry. A fifth of the sequencing projects done worldwide is done right here in Walnut Creek. JOINT GENOME INSTITUTE sequencing the world of possibilities

207

Bioinformatics and Genomics Degree Requirements Booklet  

E-Print Network [OSTI]

Bioinformatics and Genomics Degree Requirements Booklet Fall 2010 #12;Contents Course Requirements Bioinformatics and Genomics Curriculum -------------------------------------------------------8 General #12;Bioinformatics and Genomics Option (BG

dePamphilis, Claude

208

Petroleum Institute Scholarly Publications  

E-Print Network [OSTI]

Abu Dhabi The Petroleum Institute Scholarly Publications January 1st ­ December 31st 2007 #12;The Petroleum Institute Scholarly Publications January 1st ­ December 31st 2007 v #12;- 2 - Scholarly Publications 2007 | The Petroleum Institute #12;- 3 - Scholarly Publications 2007 | The Petroleum Institute

209

Petroleum Institute Scholarly Publications  

E-Print Network [OSTI]

Abu Dhabi The Petroleum Institute Scholarly Publications 2010 #12;#12;The Petroleum Institute Belhaj Petroleum Engineering Sadoon Morad Petroleum Geosciences Sivakumar Sivasubramaniam College of Arts departments within the Petroleum Institute. Names in bold show Petroleum Institute faculty who are attached

210

Genomics and plant cells: application of genomics strategies to Arabidopsis cell biology  

Science Journals Connector (OSTI)

29 June 2002 research-article Genomics and plant cells: application of genomics strategies to Arabidopsis cell biology Michael...the way we conduct plant science. Arabidopsis Genomics Functional Genomics Cell Biology| Genomics and...

2002-01-01T23:59:59.000Z

211

Institut National des Tlcommunications Advanced Telecommunications Research Institute  

E-Print Network [OSTI]

Institut National des Télécommunications Advanced Telecommunications Research Institute Rapport de

Ray, Thomas S.

212

Wellcome Trust Sanger Institute HUMAN GENETICS DATA SECURITY POLICY  

E-Print Network [OSTI]

procedures 1. Data category - All projects involving human genetics data must be assigned to one of the four. Level 2: Standard (genomic data with relatively limited demographic/phenotypic information) We expect1 Wellcome Trust Sanger Institute HUMAN GENETICS DATA SECURITY POLICY February 2011 Although almost

Maizels, Rick

213

JGI - Structural Genomics Program  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Structural Genomics Program Structural Genomics Program The structural characterization of proteins of unknown function can be described as structural genomics, an approach in which structure determination by X-ray crystallography supplies key functional information. This is exemplified by studies of the carboxysome. The structures of the first carboxysome shell proteins (Kerfeld et al., Science 2005) confirmed earlier hypotheses that they are indeed the basic building blocks of the carboxysome shell; the quaternary structure and the higher order assemblies of the proteins in the crystals provided insight into how they assemble into shell facets. Likewise, our structure of the carboxysome component CsoS3 revealed that it was a member of the beta-carbonic family, despite having no detectable sequence homology at the level of primary structure

214

Genomics of cellulolytic bacteria  

Science Journals Connector (OSTI)

The heterogeneous plant biomass is efficiently decomposed by the interplay of a great number of different enzymes. The enzyme systems in cellulolytic bacteria have been investigated by sequencing and bioinformatic analysis of genomes from plant biomass degrading microorganisms with valuable insights into the variety of the involved enzymes. This broadened our understanding of the biochemical mechanisms of plant polymer degradation and made the enzymes applicable for modern biotechnology. A list of the truly cellulolytic bacteria described and the available genomic information was examined for proteins with cellulolytic and hemicellulolytic capability. The importance of the isolation, characterization and genomic sequencing of cellulolytic microorganisms and their usage for sustainable energy production from biomass and other residues, is emphasized.

Daniela E Koeck; Alexander Pechtl; Vladimir V Zverlov; Wolfgang H Schwarz

2014-01-01T23:59:59.000Z

215

A Collection of Algal Genomes from the JGI  

SciTech Connect (OSTI)

Algae, defined as photosynthetic eukaryotes other than plants, constitute a major component of fundamental eukaryotic diversity. Acquisition of the ability to conduct oxygenic photosynthesis through endosymbiotic events has been a principal driver of eukaryotic evolution, and today algae continue to underpin aquatic food chains as primary producers. Algae play profound roles in the carbon cycle, can impose health and economic costs through toxic blooms, and are candidate sources for bio-fuels; all of these research areas are part of the mission of DOE?s Joint Genome Institute (JGI). A collection of algal projects ongoing at JGI contributes to each of these areas and illustrates analyses employed in their genome exploration.

Kuo, Alan; Grigoriev, Igor

2012-03-19T23:59:59.000Z

216

The rice genome project in?Japan  

Science Journals Connector (OSTI)

The rice genome project in Japan Takuji Sasaki Rice Genome Research Program, National...Kannondai 2-chome, Tsukuba, Ibaraki 305, Japan Since 1991, the Rice Genome Research Program in Japan has carried out rice genomics, such as large-scale...

Takuji Sasaki

1998-01-01T23:59:59.000Z

217

Mammalian comparative genomics and epigenomics  

E-Print Network [OSTI]

The human genome sequence can be thought of as an instruction manual for our species, written and rewritten over more than a billion of years of evolution. Taking a complete inventory of our genome, dissecting its genes ...

Mikkelsen, Tarjei Sigurd, 1978-

2009-01-01T23:59:59.000Z

218

Genomic Sciences | Clean Energy | ORNL  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

the fundamental principles that control complex biological systems important to clean energy and environmental applications. Multidisciplinary genomic science research and...

219

Challenges in global genomics education  

Science Journals Connector (OSTI)

Abstract In spite of high expectations for the integration of genomics into medicine, it is not clear that health providers are competent to appropriately use new genomic approaches. The issue is further complicated by differences across the globe in terms of educational systems, access to genomic technologies, and priorities in health care. In this commentary we will review some of the major challenges in educating the health provider workforce about genomic medicine.

Ashwini de Abrew; Vajira H.W. Dissanayake; Bruce R. Korf

2014-01-01T23:59:59.000Z

220

Refining Restriction Enzyme Genome Maps  

Science Journals Connector (OSTI)

A genome map is an ordering of a set of clones according to their believed position on a DNA string. Simple heuristics for genome map assembly based on single restriction enzyme with complete digestion data can lead to inaccuracies and ambiguities. This ... Keywords: constraint query languages, genome mapping, set constraints

Peter Z. Revesz

1998-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


221

SHORT REVIEW Butterfly genomics eclosing  

E-Print Network [OSTI]

SHORT REVIEW Butterfly genomics eclosing P Beldade1 , WO McMillan2 and A Papanicolaou3 1 Section to an explosion of genomic data and the emergence of new research avenues. Evolutionary and ecological functional genomics, with its focus on the genes that affect ecological success and adaptation in natural populations

Beldade, Patrícia

222

Genomics in the ecological arena  

Science Journals Connector (OSTI)

...meeting-report Meeting reports 1001 60 69 70 129 Genomics in the ecological arena Luisa Orsini...Dame, IN 46556, USA 4 The Center for Genomics and Bioinformatics, Indiana University...emerging model system in environmental genomics. Daphnia has been a model species in...

2011-01-01T23:59:59.000Z

223

International milk genomics consortium  

E-Print Network [OSTI]

University, Wooster, OH 44691, USA c University of Idaho, Moscow, ID 83844, USA d University of Colorado. The general goals of the Milk Genomics Consortium are to link the scientific community through milk and geno value of milk's components is known (German, Dillard, & Ward, 2002). The scientific challenge, therefore

Rocke, David M.

224

Genomics ace quits Japan  

Science Journals Connector (OSTI)

... end he was preparing to leave for the University of Chicago in Illinois, frustrated by Japan's lack of support for genomics and doubtful that the country would ever take a ... He is one of the country's best-funded researchers and has led some of Japan's biggest science projects. In addition, he is a successful biotechnology entrepreneur, having ...

David Cyranoski

2012-02-01T23:59:59.000Z

225

JGI - Intro to Genomics 1  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

An Introduction to Genomics: The Human Genome and Beyond An Introduction to Genomics: The Human Genome and Beyond 1 | 2 | 3 | 4 | Next>> What is genomics? THE HUMAN BODY consists of trillions of cells. Almost all contain an entire genome--the complete set of inherited genetic information encoded in our DNA. When humans reproduce, the parents' sperm and egg DNA combine to contribute a genome's worth of genetic information to the fertilized embryo. That same information is in each of the cells that eventually make up an organism. cell, DNA helix, and protein structure Some segments of DNA, called genes or "coding" DNA, contain the chemical recipe that determines particular traits; genetics is the study of the inheritance and function of these genes. Scientists now estimate that humans have about 30,000 genes, located along threadlike, tightly coiled

226

Petroleum Institute Scholarly Publications  

E-Print Network [OSTI]

Abu Dhabi The Petroleum Institute Scholarly Publications 2008 #12.. AAkkgguunn Petroleum Engineering SS.. MMoorraadd Petroleum Geosciences RR.. NNuunnnn &&SS indicate Petroleum Institute faculty who are attached to the program shown. Every effort has been made

227

Navigating protected genomics data with UCSC Genome Browser in a Box.  

E-Print Network [OSTI]

H. et al. (2013) Integrative Genomics Viewer (IGV):High-performance genomics data visualization andbrowsers for comparative genomics. Bioinformatics. In press.

2014-01-01T23:59:59.000Z

228

The Institute of Petroleum  

E-Print Network [OSTI]

The Institute of Petroleum Engineering The Institute of Petroleum Engineering (IPE) is a world leading, specialised centre in research, training and teaching, with the largest petroleum engineering and teaching. Our vision is to be the international institute of choice for research and teaching in petroleum

Painter, Kevin

229

The National Cancer Institute,  

E-Print Network [OSTI]

The National Cancer Institute, International Cancer Information Center Bldg. 82, Rm 123 Bethesda, MD 20892 The National Cancer Institute (NCI) is part of the Federal Government. NCI coordinates the government's cancer research program. It is the largest of the 17 biomedical research institutes and centers

230

institution Service Fin  

E-Print Network [OSTI]

with the up eed to have: eferred institut mary DUNS nu me, title, and em enter the infor ded verificatio st universit earching on th e n institution is r "List of Comp ent, or search for the institut thorized. Not Listed? ted, it may still uctions with th n or entity can HScompliant F o determine if i cies

Hutcheon, James M.

231

Policy for Institutional Consultants  

Science Journals Connector (OSTI)

Policy for Institutional Consultants ... The Association of Consulting Chemists and Chemical Engineers, therefore, offers "A Statement of Research Policy Suggested for Inclusion in Research Policies of Educational Institutions" which is the result of a study of a cross section of institutional policies now in ... ...

1946-06-10T23:59:59.000Z

232

OIL & GAS INSTITUTE Introduction  

E-Print Network [OSTI]

OIL & GAS INSTITUTE CONTENTS Introduction Asset Integrity Underpinning Capabilities 2 4 4 6 8 9 10 COMPETITIVENESS UNIVERSITY of STRATHCLYDE OIL & GAS INSTITUTE OIL & GAS EXPERTISE AND PARTNERSHIPS #12;1 The launch of the Strathclyde Oil & Gas Institute represents an important step forward for the University

Mottram, Nigel

233

INSTITUTE OF BIOMEDICAL ENGINEERING  

E-Print Network [OSTI]

INSTITUTE OF BIOMEDICAL ENGINEERING Innovation,Translation, Impact University College London Gower Street London WC1E 6BT UK www.ibme.ucl.ac.uk DesignbyHype!hype.co.uk UCL Institute of Biomedical Engineering #12;Innovating MedTech The Institute of Biomedical Engineering (IBME) provides a much-needed focus

Saunders, Mark

234

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Doethideomycetes Fungi  

SciTech Connect (OSTI)

The class of Dothideomycetes is one of the largest and most diverse groups of fungi. Many are plant pathogens and pose a serious threat to agricultural crops grown for biofuel, food or feed. Most Dothideomycetes have only a single host and related species can have very diverse host plants. Eighteen genomes of Dothideomycetes have currently been sequenced by the Joint Genome Institute and other sequencing centers. Here we describe the results of comparative analyses of the fungi in this group.

Ohm, Robin A.; Feau, Nicolas; Henrissat, Bernard; Schoch, Conrad L.; Horwitz, Benjamin A.; Barry, Kerrie W.; Condon, Bradford J.; Copeland, Alex C.; Dhillon, Braham; Glaser, Fabien; Hesse, Cedar N.; Kosti, Idit; LaButti, Kurt; Lindquist, Erika A.; Lucas, Susan; Salamov, Asaf A.; Bradshaw, Rosie E.; Ciuffetti, Lynda; Hamelin, Richard C.; Kema, Gert H. J.; Lawrence, Christopher; Scott, James A.; Spatafora, Joseph W.; Turgeon, B. Gillian; de Wit, Pierre J. G. M.; Zhong, Shaobin; Goodwin, Stephen B.; Grigoriev, Igor V.

2012-03-13T23:59:59.000Z

235

Fast and sensitive multiple alignment of large genomic sequences  

E-Print Network [OSTI]

in Bioinformatics and Genome Research, Universität Bielefeld, Postfach 100131, 33501 Bielefeld, Germany and 4University of Göttingen, Institute of Microbiology and Genetics, Goldschmidtstr. 1, 37077 Göttingen, Germany Email: Michael Brudno* - brudno... , Blankespoor CM, Wang ZE, Miller W, Rubin EM, Frazer KA: Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 2000, 288(5463):136-140. 14. Göttgens B, Barton LM, Gilbert JGR, Bench AJ, Sanchez MJ...

Brudno, Michael; Chapman, Michael A; Gottgens, Berthold; Batzoglou, Serafim; Morgenstern, Burkhard

2003-12-23T23:59:59.000Z

236

Genomics Division Home  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

PIs PIs Mark Biggin Jim Bristow Jan-Fang Cheng Inna Dubchak Suzanna Lewis Chris Mungall Len Pennacchio Eddy Rubin Axel Visel Divisional Information Support Staff Seminars Diversity Directory Contact Us The characterization and analysis of genome sequences from such diverse organisms as humans to the most primitive soil microbe represent a watershed opportunity for biology. The Genomics Division is taking advantage of this wealth of new information. While it is well known that DNA encodes the basic blue print of life, it is not known how best to interpret most of this information. To address this question, laboratories within the division are developing computational, biochemical, genetic, and imaging methods to decipher the complex sequence motifs that control RNA transcription, DNA replication, and chromosome structure. The Division is

237

Institutional Change for Sustainability | Department of Energy  

Broader source: Energy.gov (indexed) [DOE]

Institutional Change for Sustainability Institutional Change for Sustainability Institutional Change Continuous Improvement Cycle Institutional Change Continuous Improvement Cycle...

238

Terragenome: International Soil Metagenome Sequencing Consortium (GSC8 Meeting)  

ScienceCinema (OSTI)

The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Janet Jansson of the Lawrence Berkeley National Laboratory discusses the Terragenome Initiative at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009

Jansson, Janet [LBNL

2011-04-29T23:59:59.000Z

239

Oceanic Communities in a Changing Planet - The Tara Oceans Project (GSC8 Meeting)  

ScienceCinema (OSTI)

The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Jeroen Raes of the University of Brussels discusses the Tara-Oceans expedition at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009

Raes, Jeroen [University of Brussels

2011-04-28T23:59:59.000Z

240

Systems Biology Knowledgebase (GSC8 Meeting)  

ScienceCinema (OSTI)

The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Robert W. Cottingham of Oak Ridge National Laboratory discusses the DOE KnowledgeBase at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

Cottingham, Robert W [ORNL

2011-04-29T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


241

The Biocurator Society (GSC8 Meeting)  

ScienceCinema (OSTI)

The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Pascal Gaudet of Northwestern University talks about "The Biocurator Society" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 11, 2009

Gaudet, Pascal [Northwestern University

2011-04-28T23:59:59.000Z

242

Towards a Consensus Annotation System (GSC8 Meeting)  

ScienceCinema (OSTI)

The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. "Comparing Annotations: Towards Consensus Annotation" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 10, 2009

White, Owen [University of Maryland

2011-04-28T23:59:59.000Z

243

Complete genome sequence of Kribbella flavida type strain (IFO 14399T)  

SciTech Connect (OSTI)

The genus Kribbella consists of 15 species, with Kribbella flavida (Park et al. 1999) as the type species. The name Kribbella was formed from the acronym of the Korea Research Institute of Bioscience and Biotechnology, KRIBB. Strains of the various Kribbella species were originally isolated from soil, potato, alum slate mine, patinas of catacombs or from horse racecourses. Here we describe the features of K. flavida together with the complete genome sequence and annotation. In addition to the 5.3 Mbp genome of Nocardioides sp. JS614, this is only the second completed genome sequence of the family Nocardioidaceae. The 7,579,488 bp long genome with its 7,086 protein-coding and 60 RNA genes and is part of the Genomic Encyc-lopedia of Bacteria and Archaea project.

Pukall, Rudiger [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Chen, Feng [U.S. Department of Energy, Joint Genome Institute; Nolan, Matt [U.S. Department of Energy, Joint Genome Institute; LaButti, Kurt [U.S. Department of Energy, Joint Genome Institute; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Mavromatis, K [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Chang, Yun-Juan [ORNL; Jeffries, Cynthia [Oak Ridge National Laboratory (ORNL); Chen, Amy [U.S. Department of Energy, Joint Genome Institute; Palaniappan, Krishna [U.S. Department of Energy, Joint Genome Institute; Chain, Patrick S. G. [Lawrence Livermore National Laboratory (LLNL); Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Bristow, James [U.S. Department of Energy, Joint Genome Institute; Eisen, Jonathan [U.S. Department of Energy, Joint Genome Institute; Markowitz, Victor [U.S. Department of Energy, Joint Genome Institute; Hugenholtz, Philip [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

2010-01-01T23:59:59.000Z

244

Complete genome sequence of Hirschia baltica type strain (IFAM 1418T)  

SciTech Connect (OSTI)

The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacte- ria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a published genome sequence. H. bal- tica is of special interest because it has a dimorphic life cycle and is a stalked, budding bacte- rium. The 3,455,622 bp long chromosome and 84,492 bp plasmid with a total of 3,222 pro- tein-coding and 44 RNA genes were sequenced as part of the DOE Joint Genome Institute Program CSP 2008.

Chertkov, Olga [Los Alamos National Laboratory (LANL); Brown, Pamela J.B. [Indiana University; Kysela, David T. [Indiana University; De Pedro, Miguel A. [Universidad Autonoma de Madrid, Madrid; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Chang, Yun-Juan [ORNL; Jeffries, Cynthia [Oak Ridge National Laboratory (ORNL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Tindall, Brian [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Brun, Yves V. [Indiana University

2011-01-01T23:59:59.000Z

245

Abstract A33: Exploring pediatric cancer genomics with the UCSC Cancer Genomics Browser  

Science Journals Connector (OSTI)

...October 2014 meeting-abstract Pediatric Cancer Genomics and Epigenomics Pediatric Cancer Genomics and Epigenomics: Poster Presentations - Proffered...Abstract A33: Exploring pediatric cancer genomics with the UCSC Cancer Genomics Browser Melissa...

Melissa Cline; Olena Morozova; Teresa Swatloski; Brian Craft; Mary Goldman; David Haussler; Jingchun Zhu

2014-10-15T23:59:59.000Z

246

GIS: a web-based genomics information system for efficiently manipulating and accessing genome physical maps  

E-Print Network [OSTI]

Biological science has entered the genome era. Global genome integrative physical and genetic mapping promises to revolutionize modern genomics research. To facilitate manipulation and applications of the results from genomics research, many...

Chen, Huaming

2012-06-07T23:59:59.000Z

247

POSTDOCTORAL POSITION IN BIOINFORMATICS AND EVOLUTIONARY GENOMICS: Next generation sequencing and analysis of complex polyploid genomes  

E-Print Network [OSTI]

POSTDOCTORAL POSITION IN BIOINFORMATICS AND EVOLUTIONARY GENOMICS: Next generation sequencing and analysis of complex polyploid genomes The research group Genome Evolution and Speciation (Team) to work on the analysis of genome and transcriptome sequence data (generated using 454 Roche

Rennes, Université de

248

GenomeCons: a web server for manipulating multiple genome sequence alignments and their consensus sequences  

Science Journals Connector (OSTI)

......December 2014 brief-report Applications Note GenomeCons: a web server for manipulating multiple genome sequence alignments and...molecular biological processes. In this study, we developed a web server, GenomeCons, for manipulating multiple genome sequence......

Tetsuya Sato; Mikita Suyama

2014-12-01T23:59:59.000Z

249

Original article Neisseria Base: a comparative genomics  

E-Print Network [OSTI]

Original article Neisseria Base: a comparative genomics database for Neisseria meningitidis Lee S, septicemia and in some cases pneumonia. Genomic studies hold great promise for N. meningitidis research genomics database and genome browser that houses and displays publicly available N. meningitidis genomes

Jordan, King

250

A Novel Approach for Comparative Genomics  

E-Print Network [OSTI]

A Novel Approach for Comparative Genomics & Annotation Transfer Alban MANCHERON Raluca URICARU Eric is genome comparison good for?" Genome comparison is crucial for genome annotation, regulatory motifs identification, and vaccine design aims at finding genomic regions either specific to or in one

Paris-Sud XI, Université de

251

Single Cell Whole Genome Amplification  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Single Cell Whole Genome Amplification Single Cell Whole Genome Amplification of Uncultivated Organisms Mircea Podar , Martin Keller , and Philip Hugenholtz (* ü ) Abstract Whole genome amplification of single cells is emerging as a powerful technique for accessing the genomes of individual members of microbial communi- ties without the complication of identifying the source of sequence data posed by shotgun sequencing of environmental samples (metagenomics). This method holds particular promise for the molecular unveiling of uncultivated organisms that com- prise the bulk of the microbial diversity and functionality on our planet. 1 Introduction Over the last two decades, it has become increasingly apparent that microbial diversity

252

Genomics: Encyclopaedia of humble DNA  

Science Journals Connector (OSTI)

... ENCODE Project Consortium shows through the analysis of 1% of the human genome that the humble, unpretentious non-gene sequences have essential regulatory roles (Fig. 1). ...

John M. Greally

2007-06-13T23:59:59.000Z

253

Evolutionary Genomics of Prokaryotic Viruses.  

E-Print Network [OSTI]

??Evolutionary history of biological entities is recorded within their nucleic acid sequences and can (sometimes) be deciphered by thorough genomic analysis. In this study we… (more)

Krupovic, Mart

2010-01-01T23:59:59.000Z

254

Computational genomics on the grid.  

E-Print Network [OSTI]

??The post-genomic era is characterized by large amount of data available from sequencing projects. The large size of biological datasets, inherent complexity of biological problems… (more)

Chen, Chunxi.

2008-01-01T23:59:59.000Z

255

Introduction to Metagenomics at DOE JGI: Program Overview and Program Informatics (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)  

SciTech Connect (OSTI)

Susannah Tringe of the DOE Joint Genome Institute talks about the Program Overview and Program Informatics at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011

Tringe, Susannah [DOE JGI] [DOE JGI

2011-10-12T23:59:59.000Z

256

GenomeView: a next-generation genome browser Thomas Abeel1,2,3,  

E-Print Network [OSTI]

GenomeView: a next-generation genome browser Thomas Abeel1,2,3, *, Thomas Van Parys1,2 , Yvan Saeys GenomeView, a stand-alone genome browser specifically designed to visualize and manipulate a multitude of genomics data. GenomeView enables users to dynamically browse high volumes of aligned short-read data

Gent, Universiteit

257

The human genome project  

SciTech Connect (OSTI)

The Human Genome Project will obtain high-resolution genetic and physical maps of each human chromosome and, somewhat later, of the complete nucleotide sequence of the deoxyribonucleic acid (DNA) in a human cell. The talk will begin with an extended introduction to explain the Project to nonbiologists and to show that map construction and sequence determination require extensive computation in order to determine the correct order of the mapped entities and to provide estimates of uncertainty. Computational analysis of the sequence data will become an increasingly important part of the project, and some computational challenges are described. 5 refs.

Bell, G.I.

1991-06-01T23:59:59.000Z

258

Institute for Advanced Studies  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Institute for Advanced Studies Institute for Advanced Studies Institute for Advanced Studies NMC leverages the strengths of three research universities to build joint programs, develop strategic partnerships, provide common organization and facilities. Contact Leader TBD LANL Program Administrator Pam Hundley (505) 663-5453 Email Building regional partnerships in education, leveraging strengths of three research universities The Institute for Advanced Studies (IAS) works with the three New Mexico research universities (University of New Mexico, New Mexico Tech, and New Mexico State University) to develop research and educational collaborations and partnerships. To facilitate interactions between the universities and LANL, the three New Mexico schools established the New Mexico Consortium (NMC), a nonprofit

259

INSTITUTE COLLOQUIA AND SEMINARS  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

National Laboratory, Berkeley, California Production of Transactinide Elements in Cold Fusion Reactions at LBNL February 20 Mr. Thomas Henry, Cyclotron Institute, Texas A&M...

260

Graduate Studies - Cyclotron Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

the Department of Chemistry, but may elect to work with any Institute faculty research advisor, irrespective of that advisor's departmental affiliation. Research programs at the...

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


261

Michigan Institute Science and  

E-Print Network [OSTI]

Michigan Institute for Plasma Science and Engineering Seminar Onset of Fast Magnetic Reconnection's magnetosphere, and solar flares. These observations place strong constraints on theory, which must explain

Shyy, Wei

262

Michigan Institute Plasma Science  

E-Print Network [OSTI]

Michigan Institute Plasma Science and Engineering Seminar Neutral Atom Imaging of the Terrestrial re- search includes ion heating in the solar corona, electric double layers, magne- tosphere neutral

Shyy, Wei

263

INSTITUTE OF COMPUTER SCIENCE  

E-Print Network [OSTI]

Institute of Computer Science, Academy of Sciences of the Czech Republic. Pod vodÆrenskou v 2, 182 07 Prague 8, Czech Republic. phone: (+420)266052083 ...

264

The Norwegian Polar Institute  

Science Journals Connector (OSTI)

... ON March 1, the Norwegian Polar Institute (Norsk Polarinstitutt) was established in Oslo in order to continue and expand the activity of ...

1948-06-19T23:59:59.000Z

265

Commitment Institutional Change Principle  

Broader source: Energy.gov [DOE]

Commitment can be a crucial element that helps Federal agencies inject and emphasize sustainability in their organizational culture. Institutions and people change when they have made definite...

266

Research - Cyclotron Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Overview Viewing gamma ray spectra. The Institute research program focuses on the atomic nucleus, a many-body system of strongly interacting constituents bound together by the...

267

Massachusetts Institute of Technology  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

132011 Teppei Katori, MIT 1 Teppei Katori for MiniBooNE collaboration Massachusetts Institute of Technology Short baseline neutrino workshop, Fermilab, Batavia, IL, May 13, 2011...

268

Genome Majority Vote (GMV), Version 0.x  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Genome Majority Vote (GMV), Version 0.x Genome Majority Vote (GMV), Version 0.x The pipeline runs PRODIGAL gene predictions on all genomes, runs pan-reciprocal BLAST, and...

269

The function of genomes in bioenergetic organelles  

Science Journals Connector (OSTI)

...1998 The organelle genome database project (GOBASE). Nucleic...The mito- chondrial genome of Arabidopsis is composed...native and immigrant information. Trends Plant Sci...Microbial genes in the human genome: lateral transfer...

2003-01-01T23:59:59.000Z

270

Trichoderma: the genomics of opportunistic success  

E-Print Network [OSTI]

of a fungal prey. BMC Genomics 10, 567 (2009). This studythe TrichoEST functional genomics approach. Curr. Genet. 51,in Hypocrea jecorina. BMC Genomics. 9, 430 (2008) Mukherjee,

Druzhinina, Irina S.

2011-01-01T23:59:59.000Z

271

Cancer genomics and the TCGA project  

Science Journals Connector (OSTI)

...Research September 15, 2011 meeting-abstract Cancer Genomics Cancer Genomics: Poster Presentations - Proffered Abstracts Abstracts...San Francisco, CA Abstract A39: The UCSC Cancer Genomics Browser Brian Craft 1 Kyle Ellrott 1 Mary Goldman...

David Haussler

2010-10-01T23:59:59.000Z

272

From Integrative Genomics to Therapeutic Targets  

Science Journals Connector (OSTI)

...Research. 15 June 2013 review-article Reviews From Integrative Genomics to Therapeutic Targets Rachael Natrajan Paul Wilkerson Corresponding...conventional pathology with genomic profiling and functional genomics have begun to enhance our understanding of the genetic basis...

Rachael Natrajan and Paul Wilkerson

2013-06-15T23:59:59.000Z

273

Cultivation and Genomic, Nutritional, and Lipid Biomarker Characterization of Roseiflexus Strains Closely Related to Predominant In Situ Populations Inhabiting Yellowstone Hot Spring Microbial Mats  

Science Journals Connector (OSTI)

...microbial genomes (IMG) annotation pipeline of the Joint Genome Institute...separated into apolar (containing wax esters) and polar fractions...and alcohols that comprise the wax esters (see reference 44 for...are dominated by C30 to C36 wax esters, including n/iso...

Marcel T. J. van der Meer; Christian G. Klatt; Jason Wood; Donald A. Bryant; Mary M. Bateson; Laurens Lammerts; Stefan Schouten; Jaap S. Sinninghe Damsté; Michael T. Madigan; David M. Ward

2010-04-02T23:59:59.000Z

274

VIRAL EVOLUTION Genomic surveillance elucidates  

E-Print Network [OSTI]

VIRAL EVOLUTION Genomic surveillance elucidates Ebola virus origin and transmission during the 2014,12,13 � Robert F. Garry,8 � S. Humarr Khan,3 � Pardis C. Sabeti1,2 � In its largest outbreak, Ebola virus disease is spreading through Guinea, Liberia, Sierra Leone, and Nigeria. We sequenced 99 Ebola virus genomes from 78

Napp, Nils

275

Genome in a Bottle Consortium Work Plan  

E-Print Network [OSTI]

lines for whole genome RMs and design synthetic DNA constructs that could will be a set of well-characterized whole genome and synthetic DNA RMs along

276

C3Bio.org - Tags: Genomics  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

.jpeg, .jpe, .bmp, .tif, .tiff, .png, .gif) Submit You are here: Home Tags Genomics All Categories Tags: Genomics More tags Categories All Categories 2 Resources 2...

277

Human Genome Research: Decoding DNA  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Human Genome Research: Decoding DNA Human Genome Research: Decoding DNA Resources with Additional Information Charles DeLisi As head of DOE's Office of Health and Environmental Research, Charles DeLisi played a pivotal role in proposing and initiating the Human Genome Program in 1986. The U.S. Department of Energy (DOE) has historically been active in supporting human genome research. On September 10, 2003, Secretary of Energy Spencer Abraham presented the Secretary's Gold Award to Aristides Patrinos and Francis Collins for their leadership of the government's Human Genome Project. At DOE's Office of Science, Dr. Patrinos is the Associate Director for Biological and Environmental Research. He has been a researcher at the department's Oak Ridge National Laboratory and Brookhaven National Laboratory.

278

COUNTRY INSTITUTION SIGNING DATE  

E-Print Network [OSTI]

COUNTRY INSTITUTION SIGNING DATE /RENEWAL WEB SITE ALBANIA University of Tirana 11.12.2001 www /RENEWAL WEB SITE FINLAND JAMK University of Applied Sciences 29.10.2009 www.jamk.fi/ FRANCE Ã?cole INSTITUTION SIGNING DATE /RENEWAL WEB SITE MACEDONIA St. Cyril and Methodius" University of Skopje 11

Di Pillo, Gianni

279

Nuclear Energy Institutes  

Science Journals Connector (OSTI)

Nuclear Energy Institutes ... The Atomic Energy Commission and the American Society for Engineering Education offer their nuclear energy courses for engineering and science teachers again in the summer of 1960. ... At least 160 college and university teachers will study nuclear science in the seven institutes scheduled. ...

1960-01-11T23:59:59.000Z

280

National Institutes of Health National Institute of Mental Health  

E-Print Network [OSTI]

National Institutes of Health National Institute of Mental Health Department of Health and HumanNational Institute of Mental Health Division of Intramural Research Programs http://intramural.nimh.nih.gov/ [NIMH of Fellowship Training] National Institutes of Health National Institute of Mental Health Department of Health

Baker, Chris I.

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


281

Draft Genome Sequence  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Draft Draft Genome Sequence of Serratia sp. Strain ATCC 39006, a Model Bacterium for Analysis of the Biosynthesis and Regulation of Prodigiosin, a Carbapenem, and Gas Vesicles Peter C. Fineran, a Marina C. Iglesias Cans, a Joshua P. Ramsay, b Nabil M. Wilf, b Desiree Cossyleon, a Matthew B. McNeil, a Neil R. Williamson, b Rita E. Monson, b S. Anette Becher, c Jo-Ann L. Stanton, d Kim Brügger, e Steven D. Brown, f George P. C. Salmond b Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand a ; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom b ; AgResearch Ltd., Invermay Agricultural Centre, Mosgiel, New Zealand c ; Department of Anatomy, University of Otago, Dunedin, New Zealand d ; EASIH, University of Cambridge, Addenbrooke's Hospital, Cambridge, United Kingdom e ; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge,

282

Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with  

E-Print Network [OSTI]

. The optimized design and experimental parameters determined in this study should guide DNA microarray designs Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544; c Center is almost 20 years old. A variety of improvements in probe design and experimental conditions have brought

Botstein, David

283

RNAi-Assisted Genome Evolution in Saccharomyces cerevisiae for Complex Phenotype Engineering  

Science Journals Connector (OSTI)

†Department of Chemical and Biomolecular Engineering, ‡Department of Biochemistry, §Departments of Chemistry and Bioengineering, Institute for Genomic Biology, University of Illinois at Urbana?Champaign, Urbana, Illinois 61801, United States ... We then showed the application of RAGE for improved acetic acid tolerance, a key trait for microbial production of chemicals and fuels. ...

Tong Si; Yunzi Luo; Zehua Bao; Huimin Zhao

2014-04-23T23:59:59.000Z

284

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants  

Science Journals Connector (OSTI)

...Magill, Eds. (Missouri Botanical Garden Press, St. Louis, MO, 2004 ), pp. 3 –12. 39 We thank K. Zhou and S. Pitluck at DOE Joint Genome Institute (JGI) for GenBank submissions and G. Werner and his group at JGI for support of gene annotation...

Stefan A. Rensing; Daniel Lang; Andreas D. Zimmer; Astrid Terry; Asaf Salamov; Harris Shapiro; Tomoaki Nishiyama; Pierre-François Perroud; Erika A. Lindquist; Yasuko Kamisugi; Takako Tanahashi; Keiko Sakakibara; Tomomichi Fujita; Kazuko Oishi; Tadasu Shin-I; Yoko Kuroki; Atsushi Toyoda; Yutaka Suzuki; Shin-ichi Hashimoto; Kazuo Yamaguchi; Sumio Sugano; Yuji Kohara; Asao Fujiyama; Aldwin Anterola; Setsuyuki Aoki; Neil Ashton; W. Brad Barbazuk; Elizabeth Barker; Jeffrey L. Bennetzen; Robert Blankenship; Sung Hyun Cho; Susan K. Dutcher; Mark Estelle; Jeffrey A. Fawcett; Heidrun Gundlach; Kousuke Hanada; Alexander Heyl; Karen A. Hicks; Jon Hughes; Martin Lohr; Klaus Mayer; Alexander Melkozernov; Takashi Murata; David R. Nelson; Birgit Pils; Michael Prigge; Bernd Reiss; Tanya Renner; Stephane Rombauts; Paul J. Rushton; Anton Sanderfoot; Gabriele Schween; Shin-Han Shiu; Kurt Stueber; Frederica L. Theodoulou; Hank Tu; Yves Van de Peer; Paul J. Verrier; Elizabeth Waters; Andrew Wood; Lixing Yang; David Cove; Andrew C. Cuming; Mitsuyasu Hasebe; Susan Lucas; Brent D. Mishler; Ralf Reski; Igor V. Grigoriev; Ralph S. Quatrano; Jeffrey L. Boore

2008-01-04T23:59:59.000Z

285

Glass Sponges and Bilaterian Animals Share Derived Mitochondrial Genomic Features: A Common Ancestry or Parallel Evolution?  

E-Print Network [OSTI]

Glass Sponges and Bilaterian Animals Share Derived Mitochondrial Genomic Features: A Common Oceanographic Institution, Fort Pierce, Florida Glass sponges (Hexactinellida) are a group of deep-water benthic glass sponges and bilaterian animals, including an Arg / Ser change in the genetic code

Lavrov, Dennis V.

286

Argonne Accelerator Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

AAI Home AAI Home Welcome Accelerators at Argonne Mission Organization History Document Collection Conferences & Workshops Beams and Applications Seminar Argonne-Fermilab Collaboration Lee Teng Scholarship Program Useful Links Organization The Argonne Accelerator Institute is a matrixed organization. Its members and fellows reside in programmatic Argonne divisions. The Institute reports to the Associate Laboratory Director for Photon Science), and the administrative functions of the Institute are within the PSC directorate. Director: Rodney Gerig Associate Director: Hendrik Weerts ( Director of High Energy Physics Division) Associate Director: Sasha Zholents (Director of Accelerator Systems Division) Associate Director: Robert Janssens ( Director of Argonne Physics Division)

287

Argonne Accelerator Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Useful Links Useful Links Argonne National Laboratory Accelerator Sites Conferences Advanced Photon Source (APS) Argonne Wakefield Accelerator (AWA) Argonne Tandem Linear Accelerator System (ATLAS) High Energy Physics Division RIA (????) Link to JACoW (Joint Accelerator Conferences Website) Fermi National Accelerator Laboratory Fermilab-Argonne Collaboration Accelerator Physics Center Workshops Other Accelerator Institutes Energy Recovering Linacs Center for Advance Studies of Accelerators (Jefferson Labs) Center for Beam Physics (LBNL) Accelerator Test Facility (BNL) The Cockcroft Institute (Daresbury, UK) John Adams Institute (Rutherford, UK) ERL2009 to be held at Cornell ERL2007 ERL2005 DOE Laboratory with Accelerators Fermilab Stanford Linear Accelerator Center Brookhaven National Laboratory

288

Human genome. 1993 Program report  

SciTech Connect (OSTI)

The purpose of this report is to update the Human Genome 1991-92 Program Report and provide new information on the DOE genome program to researchers, program managers, other government agencies, and the interested public. This FY 1993 supplement includes abstracts of 60 new or renewed projects and listings of 112 continuing and 28 completed projects. These two reports, taken together, present the most complete published view of the DOE Human Genome Program through FY 1993. Research is progressing rapidly toward 15-year goals of mapping and sequencing the DNA of each of the 24 different human chromosomes.

Not Available

1994-03-01T23:59:59.000Z

289

Challenges in Whole-Genome Annotation of Pyrosequenced Eukaryotic Genomes  

SciTech Connect (OSTI)

Pyrosequencing technologies such as 454/Roche and Solexa/Illumina vastly lower the cost of nucleotide sequencing compared to the traditional Sanger method, and thus promise to greatly expand the number of sequenced eukaryotic genomes. However, the new technologies also bring new challenges such as shorter reads and new kinds and higher rates of sequencing errors, which complicate genome assembly and gene prediction. At JGI we are deploying 454 technology for the sequencing and assembly of ever-larger eukaryotic genomes. Here we describe our first whole-genome annotation of a purely 454-sequenced fungal genome that is larger than a yeast (>30 Mbp). The pezizomycotine (filamentous ascomycote) Aspergillus carbonarius belongs to the Aspergillus section Nigri species complex, members of which are significant as platforms for bioenergy and bioindustrial technology, as members of soil microbial communities and players in the global carbon cycle, and as agricultural toxigens. Application of a modified version of the standard JGI Annotation Pipeline has so far predicted ~;;10k genes. ~;;12percent of these preliminary annotations suffer a potential frameshift error, which is somewhat higher than the ~;;9percent rate in the Sanger-sequenced and conventionally assembled and annotated genome of fellow Aspergillus section Nigri member A. niger. Also,>90percent of A. niger genes have potential homologs in the A. carbonarius preliminary annotation. Weconclude, and with further annotation and comparative analysis expect to confirm, that 454 sequencing strategies provide a promising substrate for annotation of modestly sized eukaryotic genomes. We will also present results of annotation of a number of other pyrosequenced fungal genomes of bioenergy interest.

Kuo, Alan; Grigoriev, Igor

2009-04-17T23:59:59.000Z

290

Assignment of Orthologous Genes via Genome Rearrangement  

E-Print Network [OSTI]

Assignment of Orthologous Genes via Genome Rearrangement Xin Chen, Jie Zheng, Zheng Fu, Peng Nan of genomes is a fundamental and challenging problem in comparative genomics. Existing methods that assign sequence similarity and evolutionary events at a genome level, where orthologous genes are assumed

Lonardi, Stefano

291

Shotgun coverage of human genome computing  

E-Print Network [OSTI]

take about 1.5 million pages. The Human Genome Project would not be possible if our revolution were-author collection of chapters on the various uses of computing in the Human Genome Project. Peculiarly absent fromShotgun coverage of human genome computing Human Genome Computing, Second Edition edited by Martin

Eddy, Sean

292

Course Information IB 364: Human Genome and  

E-Print Network [OSTI]

Course Information IB 364: Human Genome and Bioinformatics On this page: � Course Description � Technical Support Course Description Highlights advances in understanding the human genome, utilizing the human genome, applying bioinformatics to the genome, and realizing its potential to understand human

Kent, Angela

293

A Statistical Framework for Spatial Comparative Genomics  

E-Print Network [OSTI]

A Statistical Framework for Spatial Comparative Genomics Rose Hoberman May 2007 CMU-CS-07, or the U.S. Government. #12;Keywords: spatial comparative genomics, comparative genomics, gene clusters, max-gap clusters, gene teams, whole genome duplication, paralogons, synteny, ortholog detection #12

294

Genomics and ornithology Scott V. Edwards  

E-Print Network [OSTI]

REVIEW Genomics and ornithology Scott V. Edwards Received: 23 September 2007 / Accepted: 27 Genomics is revolutionizing ornithology in the same ways it is reinvigorating other biological disciplines. In this review, I will highlight applications of genomics and genomics technologies to the study of the ecology

Edwards, Scott

295

Chapter 14: Genome Assembly and Annotation Process Annotation of other genomes  

E-Print Network [OSTI]

Chapter 14: Genome Assembly and Annotation Process Paul Kitts Summary Box 1 Annotation of other genomes NCBI may assemble a genome prior to annotation, add annotations to a genome assembled elsewhere, or simply process an annotated genome to produce RefSeqs and maps for display in Map Viewer (Chapter 20

Levin, Judith G.

296

The Genome Database Organism-centered listing of available genomic sequence records and projects  

E-Print Network [OSTI]

The Genome Database Organism-centered listing of available genomic sequence records and projects http://www.ncbi.nlm.nih.gov/genome National Center for Biotechnology Information · National Library | NCBI Genome | Last Update August 19, 2013 Contact: info@ncbi.nlm.nih.gov Scope Since 2011, the Genome

Levin, Judith G.

297

Growth Temperature and Genome Size in Bacteria Are Negatively Correlated, Suggesting Genomic Streamlining  

E-Print Network [OSTI]

Growth Temperature and Genome Size in Bacteria Are Negatively Correlated, Suggesting Genomic.wagner@ieu.uzh.ch; nsabath@gmail.com. Accepted: March 25, 2013 Abstract Prokaryotic genomes are small and compact. Either this feature is caused by neutral evolution or by natural selection favoring small genomes--genome streamlining

Wagner, Andreas

298

Extreme Genomics By Scouring the Genomes of 50 HIV-Resistant People, Study  

E-Print Network [OSTI]

Extreme Genomics By Scouring the Genomes of 50 HIV-Resistant People, Study Takes Aim at Rare Gene Genome Variation, and his colleagues think that the complete genome sequences of those fortunate few against the viral strain that usually infects humans. That's because the CCR5 protein is Extreme Genomics

Dolbow, John

299

Joint Theory Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Program General Info Program General Info Registration Info Directions to Argonne Dynamics of Symmetry Breaking A Workshop sponsored by the ANL/UChicago Joint Theory Institute April 13-17, 2009 Argonne National Laboratory, IL The Joint Theory Institute (JTI) is a multi-disciplinary research institution jointly supported at the University of Chicago and Argonne National Laboratory to enhance collaborative research between both institutions in the broad area of theory. This year JTI sponsors a workshop the aim of which is to explore the dynamics of symmetry breaking in a broad range of systems from nuclear physics to string theory, using theoretical insights such as Dyson-Schwinger equations formalism, gauge/gravity duality and lattice QCD. We will focus on systems which exhibit dynamical symmetry breaking and will cover topics essential for understanding nonperturbative QCD and physics of quark-gluon plasma.

300

Petroleum Institute Scholarly Publications  

E-Print Network [OSTI]

Abu Dhabi The Petroleum Institute Scholarly Publications 2009 #12 Mechanical Engineering HHaaddii BBeellhhaajj Petroleum Engineering SSaaddoooonn MMoorraadd Petroleum LLaannggiillllee Advanced University Placement Editors' notes: Names in bold in citations indicate Petroleum

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


301

Critical Materials Institute  

ScienceCinema (OSTI)

Ames Laboratory Director Alex King talks about the goals of the Critical Materials Institute in diversifying the supply of critical materials, developing substitute materials, developing tools and techniques for recycling critical materials, and forecasting materials needs to avoid future shortages.

Alex King

2013-06-05T23:59:59.000Z

302

INSTITUTE COLLOQUIA AND SEMINARS  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

April 16 M. Sanchez-Vega and V. E. Jacob, Cyclotron Institute, Texas A&M University Test of the Unitarity of the CKM Matrix via Superallowed + decay. April 23 Dr. Subrata...

303

Low Dose Radiation Research Program: Induction of Genomic Instability in  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Induction of Genomic Instability in vivo by Low Doses of 137Cs y Induction of Genomic Instability in vivo by Low Doses of 137Cs y rays, Authors: K. Rithidech1, E.B. Whorton2, M. Tungjai1, E. Ar-Bab1, S.R. Simon1, M. Tawde3 and C.W. Anderson3. Institutions: 1Pathology Department, Stony Brook University, NY 11794-8691, USA, 2University of Texas Medical Branch at Galveston, TX 77550-1047,3Biology Department, Brookhaven National Laboratory, Upton, NY 11973-5000. Information on potential health hazards of radiation at doses below or equal to the level traditionally requiring human radiation protection (less than or equal to 10 cGy) is currently lacking. It is therefore important to characterize early and subsequent in vivo biological response induced by low doses of ionizing radiation because such data should provide information that can help determine whether radiation at this dose level

304

Comparative Genomics of Gossypium spp. through GBS and Candidate Genes – Delving into the Controlling Factors behind Photoperiodic Flowering  

E-Print Network [OSTI]

COMPARATIVE GENOMICS OF GOSSYPIUM SPP. THROUGH GBS AND CANDIDATE GENES ? DELVING INTO THE CONTROLLING FACTORS BEHIND PHOTOPERIODIC FLOWERING A Dissertation by CARLA JO LOGAN YOUNG Submitted to the Office of Graduate Studies of Texas A.../Deletion Polymorphism IPGB Institute for Plant Genomics and Biotechnology Ka Non-synonymous Nucleotide Substitution Rate kb Kilobase(s) kDa KiloDalton Ks Synonymous Nucleotide Substitution Rate LD Long Day LD Linkage Disequilibrium MAS Marker Assisted...

Young, Carla Jo Logan

2013-08-09T23:59:59.000Z

305

Determine Institutional Change Sustainability Goals | Department...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

Determine Institutional Change Sustainability Goals Determine Institutional Change Sustainability Goals Institutional Change Continuous Improvement Cycle The first step in the...

306

Institutional Change for Sustainability Contacts | Department...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

Institutional Change for Sustainability Contacts Institutional Change for Sustainability Contacts For more information about institutional change for sustainability, contact: Jerry...

307

Institutional Change Process for Sustainability  

Broader source: Energy.gov [DOE]

For establishing institutional change in a Federal agency to achieve sustainability or other energy efficiency goals, follow the five-step institutional change process. In accordance with the...

308

Strategies for Achieving Institutional Change  

Broader source: Energy.gov [DOE]

Many strategies—including those derived from Institutional Change Principles–may be used to effect institutional change in support of energy and sustainability objectives.

309

10.1101/gr.133330.111Access the most recent version at doi: published online March 27, 2012Genome Res.  

E-Print Network [OSTI]

Kingdom; 5 Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland; 6 Functional Genomics Center, ETH and University of Zurich, 8057 Zurich, Switzerland; 7 Laval of Science, University of Zurich, 8057 Zurich, Switzerland; 10 Institute of Pharmaceutical Sciences, ETH

Miska, Eric

310

CALIFORNIA STATE UNIVERSITY, FULLERTON INSTITUTIONAL RESEARCH AND ANALYTICAL STUDIES  

E-Print Network [OSTI]

HIGH 31 WALNUT HIGH 28 WEST COVINA HIGH 27 NORWALK HIGH 27 LOS ALTOS HIGH 27 LA MIRADA HIGH 27 SANTA FE 21 CALVARY CHAPEL H S 5 CANYON HIGH 27 CAPISTRANO VALLEY CHRISTIAN SCHOOL 1 CAPISTRANO VALLEY HIGH 7 4 FOOTHILL HIGH 11 FOUNTAIN VALLEY HIGH 19 FULLERTON UNION HIGH 38 GARDEN GROVE H

de Lijser, Peter

311

Abstract A33: Exploring pediatric cancer genomics with the UCSC Cancer Genomics Browser  

Science Journals Connector (OSTI)

...University of California, Santa Cruz, CA. The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu) is a set of web-based tools to display, investigate and analyze cancer genomics data and associated clinical data. Experimental quantities...

Melissa Cline; Olena Morozova; Teresa Swatloski; Brian Craft; Mary Goldman; David Haussler; Jingchun Zhu

2014-10-15T23:59:59.000Z

312

Towards a standards-compliant genomic and metagenomic publication record  

SciTech Connect (OSTI)

Increasingly we are aware as a community of the growing need to manage the avalanche of genomic and metagenomic data, in addition to related data types like ribosomal RNA and barcode sequences, in a way that tightly integrates contextual data with traditional literature in a machine-readable way. It is for this reason that the Genomic Standards Consortium (GSC) formed in 2005. Here we suggest that we move beyond the development of standards and tackle standards-compliance and improved data capture at the level of the scientific publication. We are supported in this goal by the fact that the scientific community is in the midst of a publishing revolution. This revolution is marked by a growing shift away from a traditional dichotomy between 'journal articles' and 'database entries' and an increasing adoption of hybrid models of collecting and disseminating scientific information. With respect to genomes and metagenomes and related data types, we feel the scientific community would be best served by the immediate launch of a central repository of short, highly structured 'Genome Notes' that must be standards-compliant. This could be done in the context of an existing journal, but we also suggest the more radical solution of launching a new journal. Such a journal could be designed to cater to a wide range of standards-related content types that are not currently centralized in the published literature. It could also support the demand for centralizing aspects of the 'gray literature' (documents developed by institutions or communities) such as the call by the GSCl for a central repository of Standard Operating Procedures describing the genomic annotation pipelines of the major sequencing centers. We argue that such an 'eJournal', published under the Open Access paradigm by the GSC, could be an attractive publishing forum for a broader range of standardization initiatives within, and beyond, the GSC and thereby fill an unoccupied yet increasingly important niche within the current research landscape.

Fenner, Marsha W; Garrity, George M.; Field, Dawn; Kyrpides, Nikos; Hirschman, Lynette; San-sone, Susanna-Assunta; Anguiloi, Samuel; Cole, James R.; Glockner, Frank Oliver; Kolker, Eugene; Kowaluchuk, George; Moran, Mary Ann; Ussery, Dave; White, Owen

2008-04-01T23:59:59.000Z

313

National Institute of Agricultural Botany  

Science Journals Connector (OSTI)

... D. M. Wills, directed attention to the value of the Institute's system of substations. By means of this organization the Institute is able to make recommendations to farmers ... and Scarborough. There are at present two defective links in the Institute's chain of substations—the Fens and Wales—and the Institute hopes that these defects will shortly be remedied ...

1937-11-13T23:59:59.000Z

314

INSTITUTE ON ASSETS & SOCIAL POLICY  

E-Print Network [OSTI]

INSTITUTE ON ASSETS & SOCIAL POLICY LIVING LONGER ON LESS IN MASSACHUSETTS: THE NEW ECONOMIC (IN)SECURITY OF SENIORS Tatjana Meschede Laura Sullivan Thomas Shapiro #12;About the Institute on Assets and Social Policy The Institute on Assets and Social Policy (IASP), a research institute at the Heller School for Social Policy

Snider, Barry B.

315

Argonne Accelerator Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Mission Mission The mission of the Argonne Accelerator Institute is centered upon the following related goals: Locate next generation accelerator facilities in Northern Illinois Advance accelerator technology Oversee a selected, strategic, lab-wide, and acclaimed accelerator R&D portfolio In order to accomplish the above goals, the institute has established five objectives. These are coupled to programmatic objectives, and are dependent on each other, but they serve to identify important areas for the institute to focus its activities. Educate the "next generation" of accelerator physicists and engineers Work with area Universities to establish Joint Appointments and Adjunct Professorships Identify students Provide research opportunities at Argonne Work with the US Particle Accelerator School

316

Argonne Accelerator Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

AAI Home AAI Home Welcome Accelerators at Argonne Mission Organization History Document Collection Conferences & Workshops Beams and Applications Seminar Argonne-Fermilab Collaboration Lee Teng Scholarship Program Useful Links Argonne Accelerator Institute In 2006, Argonne Laboratory Director Robert Rosner formed the AAI as a focal point for accelerator initiatives. The institute works to utilize Argonne's extensive accelerator resources, to enhance existing facilities, to determine the future of accelerator development and construction, and to oversee a dynamic and acclaimed accelerator physics portfolio. More Information for: Members * Students Industrial Collaborators - Working with Argonne Link to: Accelerators for America's Future Upcoming Events and News 4th International Particle Accelerator Conference (IPAC'13)

317

Institut Farman 6eme Journe  

E-Print Network [OSTI]

Institut Farman 6eme Journée Institut Farman Jeudi 22 Novembre 2012 FR3311 CNRS www.farman.ens-cachan.fr #12;Institut Farman Les projets Farman ont donné lieu depuis 2007 à 28 projets dont 10 en cours ASTECH (2 thèses en co-direction LMT/SATIE) #12;Institut Farman L'Institut Farman c'est aussi : Equipex

318

Human Genome Education Program  

SciTech Connect (OSTI)

The funds from the DOE Human Genome Program, for the project period 2/1/96 through 1/31/98, have provided major support for the curriculum development and field testing efforts for two high school level instructional units: Unit 1, ''Exploring Genetic Conditions: Genes, Culture and Choices''; and Unit 2, ''DNA Snapshots: Peaking at Your DNA''. In the original proposal, they requested DOE support for the partial salary and benefits of a Field Test Coordinator position to: (1) complete the field testing and revision of two high school curriculum units, and (2) initiate the education of teachers using these units. During the project period of this two-year DOE grant, a part-time Field-Test Coordinator was hired (Ms. Geraldine Horsma) and significant progress has been made in both of the original proposal objectives. Field testing for Unit 1 has occurred in over 12 schools (local and non-local sites with diverse student populations). Field testing for Unit 2 has occurred in over 15 schools (local and non-local sites) and will continue in 12-15 schools during the 96-97 school year. For both curricula, field-test sites and site teachers were selected for their interest in genetics education and in hands-on science education. Many of the site teachers had no previous experience with HGEP or the unit under development. Both of these first-year biology curriculum units, which contain genetics, biotechnology, societal, ethical and cultural issues related to HGP, are being implemented in many local and non-local schools (SF Bay Area, Southern California, Nebraska, Hawaii, and Texas) and in programs for teachers. These units will reach over 10,000 students in the SF Bay Area and continues to receive support from local corporate and private philanthropic organizations. Although HGEP unit development is nearing completion for both units, data is still being gathered and analyzed on unit effectiveness and student learning. The final field testing result from this analysis will contribute to the final revisions of each unit during the second-year of this grant.

Richard Myers; Lane Conn

2000-05-01T23:59:59.000Z

319

Enhancer Identification through Comparative Genomics  

SciTech Connect (OSTI)

With the availability of genomic sequence from numerousvertebrates, a paradigm shift has occurred in the identification ofdistant-acting gene regulatory elements. In contrast to traditionalgene-centric studies in which investigators randomly scanned genomicfragments that flank genes of interest in functional assays, the modernapproach begins electronically with publicly available comparativesequence datasets that provide investigators with prioritized lists ofputative functional sequences based on their evolutionary conservation.However, although a large number of tools and resources are nowavailable, application of comparative genomic approaches remains far fromtrivial. In particular, it requires users to dynamically consider thespecies and methods for comparison depending on the specific biologicalquestion under investigation. While there is currently no single generalrule to this end, it is clear that when applied appropriately,comparative genomic approaches exponentially increase our power ingenerating biological hypotheses for subsequent experimentaltesting.

Visel, Axel; Bristow, James; Pennacchio, Len A.

2006-10-01T23:59:59.000Z

320

Perimeter Institute Cosmic Acceleration  

E-Print Network [OSTI]

Wayne Hu Perimeter Institute April 2010 Cosmic Acceleration Dark Energy v. Modified Gravity #12;Outline · Dark Energy vs Modified Gravity · Three Regimes of Modified Gravity · Worked (Toy) Models: f 1998 Discovery #12;Mercury or Pluto? General relativity says Gravity = Geometry And Geometry = Matter-Energy

Hu, Wayne

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


321

Cancer Research Beckman Institute  

E-Print Network [OSTI]

Cancer Research Beckman Institute FOR ADVANCED SCIENCE AND TECHNOLOGY #12;T The medical and scientific worlds have known for many years that in order to truly understand and treat cancer, the fight has and cancerous tumors have to first be visualized at the smallest scales possible, and then treated in the most

Illinois at Urbana-Champaign, University of

322

Michigan Institute Science and  

E-Print Network [OSTI]

Michigan Institute for Plasma Science and Engineering Seminar Universal Magnetic Structures Prof. Mark Moldwin Dept. of Atmospheric, Oceanic and Space Sciences University of Michigan Thursday, 19 Nov and provide examples on how thinking about discrete structures can add to our understanding of the solar

Shyy, Wei

323

Genomics, Intellectual Disability, and Autism  

Science Journals Connector (OSTI)

To the Editor: Mefford et al. (Feb. 23 issue) provide an excellent review of the genomic factors in autism but do not mention that the quantitative contribution of the enumerated genetic factors to the rates of autism is small, as compared with the contribution of nongenomic (i.e. environmental)... To the Editor: Mefford et al. (Feb. 23 issue)1 provide an excellent review of the genomic factors in autism but do not mention that the quantitative contribution of the enumerated genetic factors to the rates of autism is small, as compared with the ...

2012-06-07T23:59:59.000Z

324

Genomics, Health Care, and Society  

Science Journals Connector (OSTI)

To the Editor: Hudson, in her otherwise comprehensive review article on genomic medicine (Sept. 15 issue), did not mention the issue of reimbursement and the role of payers such as the Centers for Medicare and Medicaid Services. In my outpatient clinic, many patients decline testing for a BRCA... To the Editor: Hudson, in her otherwise comprehensive review article on genomic medicine (Sept. 15 issue),1 did not mention the issue of reimbursement and the role of payers such as the Centers for Medicare and Medicaid Services. In my outpatient clinic, ...

2011-12-15T23:59:59.000Z

325

; Evolution of genes and genomes on the Drosophila phylogeny  

E-Print Network [OSTI]

ARTICLES ; Evolution of genes and genomes on the Drosophila phylogeny Drosophila 12 Genomes Consortium* Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome

Kellis, Manolis

326

Kin selection, genomics and caste-antagonistic pleiotropy  

Science Journals Connector (OSTI)

...Special feature 1001 14 70 Kin selection, genomics and caste-antagonistic pleiotropy David...evolution of social behaviours. The genomics revolution now provides the opportunity...Outlook: kin selection and social insect genomics The revolution in social insect genomics...

2013-01-01T23:59:59.000Z

327

Genome and proteome annotation: organization, interpretation and integration  

Science Journals Connector (OSTI)

...In addition, the Human Genome Variation Society aims...of genomic variation information. With this in mind...variation within the human genome. The elucidation of...beginning of the 1000 genomes project (Siva 2008) aims to...

2009-01-01T23:59:59.000Z

328

Strategies and tools for whole genome alignments  

SciTech Connect (OSTI)

The availability of the assembled mouse genome makespossible, for the first time, an alignment and comparison of two largevertebrate genomes. We have investigated different strategies ofalignment for the subsequent analysis of conservation of genomes that areeffective for different quality assemblies. These strategies were appliedto the comparison of the working draft of the human genome with the MouseGenome Sequencing Consortium assembly, as well as other intermediatemouse assemblies. Our methods are fast and the resulting alignmentsexhibit a high degree of sensitivity, covering more than 90 percent ofknown coding exons in the human genome. We have obtained such coveragewhile preserving specificity. With a view towards the end user, we havedeveloped a suite of tools and websites for automatically aligning, andsubsequently browsing and working with whole genome comparisons. Wedescribe the use of these tools to identify conserved non-coding regionsbetween the human and mouse genomes, some of which have not beenidentified by other methods.

Couronne, Olivier; Poliakov, Alexander; Bray, Nicolas; Ishkhanov,Tigran; Ryaboy, Dmitriy; Rubin, Edward; Pachter, Lior; Dubchak, Inna

2002-11-25T23:59:59.000Z

329

A Gene Map of the Human Genome  

Science Journals Connector (OSTI)

...sanger.ac.uk/ Stanford Human Genome Center http://www-shgc.stanford.edu/ Wellcome Trust Centre for Human...sanger.ac.ukl Stanford Human Genome Center http://www-shgc.stanford.edu/ Wellcome Trust Centre for Human Genetics http...

G. D. Schuler; M. S. Boguski; E. A. Stewart; L. D. Stein; G. Gyapay; K. Rice; R. E. White; P. Rodriguez-Tomé; A. Aggarwal; E. Bajorek; S. Bentolila; B. B. Birren; A. Butler; A. B. Castle; N. Chiannilkulchai; A. Chu; C. Clee; S. Cowles; P. J. R. Day; T. Dibling; N. Drouot; I. Dunham; S. Duprat; C. East; C. Edwards; J.-B. Fan; N. Fang; C. Fizames; C. Garrett; L. Green; D. Hadley; M. Harris; P. Harrison; S. Brady; A. Hicks; E. Holloway; L. Hui; S. Hussain; C. Louis-Dit-Sully; J. Ma; A. MacGilvery; C. Mader; A. Maratukulam; T. C. Matise; K. B. McKusick; J. Morissette; A. Mungall; D. Muselet; H. C. Nusbaum; D. C. Page; A. Peck; S. Perkins; M. Piercy; F. Qin; J. Quackenbush; S. Ranby; T. Reif; S. Rozen; C. Sanders; X. She; J. Silva; D. K. Slonim; C. Soderlund; W.-L. Sun; P. Tabar; T. Thangarajah; N. Vega-Czarny; D. Vollrath; S. Voyticky; T. Wilmer; X. Wu; M. D. Adams; C. Auffray; N. A. R. Walter; R. Brandon; A. Dehejia; P. N. Goodfellow; R. Houlgatte; J. R. Hudson Jr.; S. E. Ide; K. R. Iorio; W. Y. Lee; N. Seki; T. Nagase; K. Ishikawa; N. Nomura; C. Phillips; M. H. Polymeropoulos; M. Sandusky; K. Schmitt; R. Berry; K. Swanson; R. Torres; J. C. Venter; J. M. Sikela; J. S. Beckmann; J. Weissenbach; R. M. Myers; D. R. Cox; M. R. James; D. Bentley; P. Deloukas; E. S. Lander; T. J. Hudson

1996-10-25T23:59:59.000Z

330

Unlocking the Secrets of the Genome  

E-Print Network [OSTI]

The primary objective of the Human Genome Project was to produce high-quality sequences not just for the human genome but also for those of the chief model organisms: Escherichia coli, yeast (Saccharomyces cerevisiae), ...

Celniker, Susan E.

331

Comparative Sequencing of Plant Genomes: Choices to Make The first sequenced genome of a plant,  

E-Print Network [OSTI]

COMMENTARY Comparative Sequencing of Plant Genomes: Choices to Make The first sequenced genome of a plant, Arabidopsis thaliana, was published ,6 years ago (Arabidopsis Genome Initiative, 2000). Since that time, the complete rice genome (Oryza sativa; Goff et al., 2002; Yu et al., 2002; International Rice

Purugganan, Michael D.

332

A Possible Genome To Architecture Project (GenToA) [The Meta-Genome Project?  

E-Print Network [OSTI]

concern about the Human Genome project, comparing it with buying a book written in a language nobodyA Possible Genome To Architecture Project (GenToA) [The Meta-Genome Project?] Installed: 2 Aug 2010 can a genome specify an information-processing architecture that grows itself guided by interaction

Sloman, Aaron

333

Whole-genome shotgun assembly and comparison of human genome assemblies  

E-Print Network [OSTI]

Whole-genome shotgun assembly and comparison of human genome assemblies Sorin Istraila , Granger G a whole-genome shotgun assembly (called WGSA) of the human genome generated at Celera in 2001. The Celera. With the nearly complete human DNA sequence [National Center for Biotechnology Information (NCBI) Build 34] now

Shatkay, Hagit

334

Population genomics20-02-2009 Antnio Rodrigues; Bruno Santos / 59 Population Genomics  

E-Print Network [OSTI]

Population genomics20-02-2009 António Rodrigues; Bruno Santos / 59 Population Genomics 1 António Rodrigues (PDBC 2008) Bruno Santos (PDBC 2008) #12;Population genomics20-02-2009 António Rodrigues; Bruno Santos / 59 Contents 2 2 1000 genome project 1 Motivation and Introduction New generation sequencing

Goldschmidt, Christina

335

Genome Sequence of the Pea Aphid Acyrthosiphon The International Aphid Genomics Consortium"  

E-Print Network [OSTI]

Genome Sequence of the Pea Aphid Acyrthosiphon pisum The International Aphid Genomics Consortium we present the 464 Mb draft genome assembly of the pea aphid Acyrthosiphon pisum. This first published whole genome sequence of a basal hemimetabolous insect provides an outgroup to the multiple

Paris-Sud XI, Université de

336

FCTO Projects and the Materials Genome Initiative  

Broader source: Energy.gov [DOE]

Download presentation slides from the DOE Fuel Cell Technologies Office webinar, Materials Genome Initiative, held on December 2, 2014.

337

GDB - Human Genome Database final report  

SciTech Connect (OSTI)

This is the DOE final report for the GDB, Human Genome Database, project at the Johns Hopkins University.

Talbot, C. Conover, Jr.

2002-01-08T23:59:59.000Z

338

Institution Name Institution Name Address Place Zip Notes Website Region  

Open Energy Info (EERE)

Institute for the Built Environment CSU Institute for the Built Institute for the Built Environment CSU Institute for the Built Environment Oval Drive Fort Collins Colorado http www ibe colostate edu Rockies Area Colorado Renewable Energy Collaboratory Colorado Renewable Energy Collaboratory th Street Suite Denver Colorado http www coloradocollaboratory org Rockies Area Colorado School of Mines Colorado Energy Research Institute Colorado School of Mines Colorado Energy Research Institute Illinois Street Golden Colorado http www ceri mines org Rockies Area Denver University International Institute for Environment and Enterprise Denver University International Institute for Environment and Enterprise S University Blvd Denver Colorado http www du edu enviro Research htm Rockies Area EverSealed Windows Inc EverSealed Windows Inc Interlocken Drive Evergreen

339

Gerber-JGI  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

NERSC for the NERSC for the Joint Genome Institute Richard Gerber NERSC User Services May 2, 2011 Joint Genome Institute, Walnut Creek, CA 2 * What is NERSC? * Computing Resources * Storage Resources * How to Get Help * Accounts and Allocations * Connecting to NERSC * Computing Environment * Compiling Code * Running Jobs Outline What is NERSC? 3 !"#$% &'% ()$% *+'% ()"% ,*'% -)"% *+'% .)/% *&'% 0/% **'% 2010 Allocations 4 * NERSC serves a large population Over 3000 users, 400 projects, 500 code instances * Focus on "unique" resources - Expert consulting and other services - High end computing systems - High end storage systems - Interface to high speed networking * Science-driven - Machines procured competitively using application benchmarks from DOE/SC

340

DATA QUALITY IN GENOME DATABASES (Research Paper)  

E-Print Network [OSTI]

DATA QUALITY IN GENOME DATABASES (Research Paper) Heiko Müller Humboldt University Berlin, Germany@dbis.informatik.hu-berlin.de Abstract: Genome databases store data about molecular biological entities such as genes, proteins, diseases is their importance in the process of drug discovery. Genome data is analyzed and interpreted to gain so-called leads

Weske, Mathias

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


341

Genome Biology 2005, 6:312 commentreviewsreportsdepositedresearchinteractionsinformationrefereedresearch  

E-Print Network [OSTI]

Genome Biology 2005, 6:312 commentreviewsreportsdepositedresearchinteractionsinformationrefereedresearch Meeting report Large-scale discovery and validation of functional elements in the human genome-mail: bbernst@fas.harvard.edu. Manolis Kellis. E-mail: manoli@mit.edu Published: 1 March 2005 Genome Biology

Kellis, Manolis

342

Genome Biology 2006, 7:320 commentreviewsreportsdepositedresearchinteractionsinformationrefereedresearch  

E-Print Network [OSTI]

Genome Biology 2006, 7:320 commentreviewsreportsdepositedresearchinteractionsinformationrefereedresearch Meeting report Mobile DNA: genomes under the influence Cédric Feschotte and Ellen J Pritham Feschotte. Email: cedric@uta.edu Published: 30 June 2006 Genome Biology 2006, 7:320 (doi:10.1186/gb-2006

Pritham, Ellen J.

343

Genome Biology 2004, 6:302 commentreviewsreportsdepositedresearchinteractionsinformationrefereedresearch  

E-Print Network [OSTI]

Genome Biology 2004, 6, Technologiepark 927, B-9052 Ghent, Belgium. E-mail: Yves.vandepeer@psb.ugent.be Published: 21 December 2004 Genome at http://genomebiology.com/2004/6/1/302 © 2004 BioMed Central Ltd A report on the Plant Genomics European

Gent, Universiteit

344

Inferring Ancestral Chloroplast Genomes with Inverted Repeat  

E-Print Network [OSTI]

Inferring Ancestral Chloroplast Genomes with Inverted Repeat Liying Cui # , Feng Yue + , Claude W 87131 Abstract--- Genome evolution is shaped not only by nucleotide substitutions, but also by structural changes including gene and genome duplications, inser­ tions/deletions and gene order

Tang, Jijun

345

Genome Biology 2007, 8:R34 commentreviewsreportsdepositedresearchrefereedresearchinteractionsinformation  

E-Print Network [OSTI]

Genome Biology 2007, 8:R34 analytics tool for genome assemblies Michael C Schatz*, Adam M Phillippy*, Ben Shneiderman and Steven L the original work is properly cited. Hawkeye: a visual analytics tool for genome assembliesHawkeye is a new

Shneiderman, Ben

346

Computational Approaches Towards Human Genome Annotation  

E-Print Network [OSTI]

Computational Approaches Towards Human Genome Annotation Mark Gerstein Molecular Biophysics of the human genome. My talk will be concerned with topics within this area, in particular annotating pseudogenes (protein fossils) in the genome. I will discuss a comprehensive pseudogene identification pipeline

Singh, Jaswinder Pal

347

Experimental genomics of fitness in yeast  

Science Journals Connector (OSTI)

...Review articles 1001 70 129 Experimental genomics of fitness in yeast Graham Bell * * graham...084533 ) Liti, G. , 2009 Population genomics of domestic and wild yeasts. Nature...1126/science.1091317 ) Experimental genomics of fitness in yeast. | The set of single-gene...

2010-01-01T23:59:59.000Z

348

Rice functional genomics research in China  

Science Journals Connector (OSTI)

...compiled by Zhu Chen Rice functional genomics research in China Bin Han 1 7 * Yongbiao...People's Republic of China Rice functional genomics is a scientific approach that seeks to...facilitated research in rice functional genomics in China. The Ministry of Science and...

2007-01-01T23:59:59.000Z

349

Pairwise Comparison Between Genomic Sequences and  

E-Print Network [OSTI]

COM­ BAT is applied to comparative analysis between yeast genomes, and between the human genomePairwise Comparison Between Genomic Sequences and Optical­maps by Bing Sun A dissertation submitted a research problem and the need of persistence to accomplish a goal. He introduced the CAPO project to me

Mohri, Mehryar

350

Pairwise Comparison Between Genomic Sequences and  

E-Print Network [OSTI]

. In experiments COM- BAT is applied to comparative analysis between yeast genomes, and between the human genomePairwise Comparison Between Genomic Sequences and Optical-maps by Bing Sun A dissertation submitted a research problem and the need of persistence to accomplish a goal. He introduced the CAPO project to me

Mohri, Mehryar

351

SCIENCE, POLITICS. AND THE HUMAN GENOM  

E-Print Network [OSTI]

/ Robert Cook-Deegan. p. cm. Includes bibliographical references. 1. Human Genome Project. 2. Human geneSCIENCE, POLITICS. AND THE HUMAN GENOM A scrupulous . . . narrative of the genesis and opening- DEEGAN #12;#12;#12;#12;The GENE WARS Science, Politics, and theHuman Genome ROBERT COOK-DEEGAN W - W

Richardson, David

352

Genomic Comparisons of Humans and Chimpanzees  

E-Print Network [OSTI]

Genomic Comparisons of Humans and Chimpanzees Ajit Varki1 and David L. Nelson2 1 Glycobiology to human evolution, development, and disease. Sequence differences from the human genome were confirmed in the sidebar Online Sources of Information Regarding the Chimpanzee Genome. At the outset, we also emphasize

353

Genomics-based drug discovery venture  

Science Journals Connector (OSTI)

Genomics-based drug discovery venture ... The Cambridge, Mass.-based company calls its DiscoverEase program "functional genomics"—designed to isolate and rapidly determine not only genes but also the related functions of critical proteins. ... Other genomics programs sequence vast amounts of human genetic information. ...

ANN THAYER

1996-10-07T23:59:59.000Z

354

Genomics Rises To Drug Discovery Challenge  

Science Journals Connector (OSTI)

Genomics Rises To Drug Discovery Challenge ... Functional genomics and functional proteomics provide a set of powerful tools to help identify novel cellular targets ... With pharmaceutical companies and biotechnology firms always looking for ways to discover new medicines more quickly and more efficiently, they are increasingly turning to new genomics and proteomics technologies to speed things along. ...

STU BORMAN

1999-04-19T23:59:59.000Z

355

UNL Core for Applied Genomics and Ecology  

E-Print Network [OSTI]

UNL Core for Applied Genomics and Ecology Bioinformatics training Roche 454 GS-FLX Registration, Microbiomes, Variant Analysis, Whole Genomes, Transcriptomes Data Analysis and Statistics CAGE database and employer. University of Nebraska-Lincoln*Core for Applied Genomics and Ecology* 323 Filley Hall *Lincoln

Farritor, Shane

356

Bridging mycorrhizal genomics, metagenomics and forest ecology  

E-Print Network [OSTI]

Meetings Bridging mycorrhizal genomics, metagenomics and forest ecology 6th New Phytologist of easily cultured saprotrophic fungi (among the first three published genomes were the models Saccharomyces or biotechnological interest, genomics is now poised to rapidly permeate the fields of fungal ecology and evolution

Pringle, Anne

357

One day seminar: Genetics and Genomics of  

E-Print Network [OSTI]

SCHOOL OF MEDICINE One day seminar: Genetics and Genomics of Infectious Diseases Malaria and TB 14th June 2013 University of St Andrews - School of Medicine Pathogen genome research allows exquisite to understanding disease progression. Pathogen genome sequencing is accessible to most. Outputs have broad

Brierley, Andrew

358

Fraud strikes top genome lab  

SciTech Connect (OSTI)

Francis Collins, head of NIH`s Human Genome Project has informed colleagues that a junior researcher in his lab facke data in five papers co-authored by Collins. This article describes the whole scenario, how it was discovered, and what the reprocussions are.

Marshall, E.

1996-11-08T23:59:59.000Z

359

Nuclear Organization and Genome Function  

E-Print Network [OSTI]

Nuclear Organization and Genome Function Kevin Van Bortle and Victor G. Corces Department-range interactions and have proposed roles in nuclear organization. In this review, we explore recent findings for the roles of insulators in nuclear organization. 163 Annu.Rev.CellDev.Biol.2012.28:163-187.Downloadedfromwww

Corces, Victor G.

360

List of all HEP Institutions  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Top 500 Top 500 HEP and Astrophysics Institutions by Country This document lists the 500 major high-energy physics and astrophysics institutions, sorted by country. Each listing will show a [SPIRES Entry] which gives the full address and phone/fax/url of the institution in addition to links to papers in HEP and people in HEPNAMES. The [Home page], where known, takes you directly to the departmental home page. Alternatively try our INSTITUTIONS search page. This list of the top 500 institutions is chosen by the number of papers from each institution in the past 5 years. Click here for the full list of HEP institutions. Please send any comments, corrections, updates or information on new institutions to: inst@slac.stanford.edu. Last modified at 17:12:32 on 06/30/04.

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


361

BEEKEEPING INSTITUTE Young Harris College  

E-Print Network [OSTI]

2008 BEEKEEPING INSTITUTE May 15-17 Young Harris College Young Harris, Georgia #12;Young Harris, section comb honey, mead, and beekeeping gadgets. We urge students to participate in the Institute Honey

Delaplane, Keith S.

362

Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501  

Science Journals Connector (OSTI)

...Yuetan Dou Ming Chen Shuzhen Ping Junping Peng Wei Lu Wei Zhang...Claudine Elmerich Min Lin Qi Jin *Biotechnology Research Institute...Microbiol 4 : 824 – 841 . 29 Xi J ( 2000 ) Hyperproduction of polyesters consisting...USA 103 : 9584 – 9589 . 43 Jin Q ( 2002 ) Genome sequence of...

Yongliang Yan; Jian Yang; Yuetan Dou; Ming Chen; Shuzhen Ping; Junping Peng; Wei Lu; Wei Zhang; Ziying Yao; Hongquan Li; Wei Liu; Sheng He; Lizhao Geng; Xiaobing Zhang; Fan Yang; Haiying Yu; Yuhua Zhan; Danhua Li; Zhanglin Lin; Yiping Wang; Claudine Elmerich; Min Lin; Qi Jin

2008-01-01T23:59:59.000Z

363

The ecoresponsive genome of Daphnia pulex  

SciTech Connect (OSTI)

This document provides supporting material related to the sequencing of the ecoresponsive genome of Daphnia pulex. This material includes information on materials and methods and supporting text, as well as supplemental figures, tables, and references. The coverage of materials and methods addresses genome sequence, assembly, and mapping to chromosomes, gene inventory, attributes of a compact genome, the origin and preservation of Daphnia pulex genes, implications of Daphnia's genome structure, evolutionary diversification of duplicated genes, functional significance of expanded gene families, and ecoresponsive genes. Supporting text covers chromosome studies, gene homology among Daphnia genomes, micro-RNA and transposable elements and the 46 Daphnia pulex opsins. 36 figures, 50 tables, 183 references.

Colbourne, John K.; Pfrender, Michael E.; Gilbert, Donald; Thomas, W. Kelley; Tucker, Abraham; Oakley, Todd H.; Tokishita, Shinichi; Aerts, Andrea; Arnold, Georg J.; Basu, Malay Kumar; Bauer, Darren J.; Caceres, Carla E.; Carmel, Liran; Casola, Claudio; Choi, Jeong-Hyeon; Detter, John C.; Dong, Qunfeng; Dusheyko, Serge; Eads, Brian D.; Frohlich, Thomas; Geiler-Samerotte, Kerry A.; Gerlach, Daniel; Hatcher, Phil; Jogdeo, Sanjuro; Krijgsveld, Jeroen; Kriventseva, Evgenia V; Kültz, Dietmar; Laforsch, Christian; Lindquist, Erika; Lopez, Jacqueline; Manak, Robert; Muller, Jean; Pangilinan, Jasmyn; Patwardhan, Rupali P.; Pitluck, Samuel; Pritham, Ellen J.; Rechtsteiner, Andreas; Rho, Mina; Rogozin, Igor B.; Sakarya, Onur; Salamov, Asaf; Schaack, Sarah; Shapiro, Harris; Shiga, Yasuhiro; Skalitzky, Courtney; Smith, Zachary; Souvorov, Alexander; Sung, Way; Tang, Zuojian; Tsuchiya, Dai; Tu, Hank; Vos, Harmjan; Wang, Mei; Wolf, Yuri I.; Yamagata, Hideo; Yamada, Takuji; Ye, Yuzhen; Shaw, Joseph R.; Andrews, Justen; Crease, Teresa J.; Tang, Haixu; Lucas, Susan M.; Robertson, Hugh M.; Bork, Peer; Koonin, Eugene V.; Zdobnov, Evgeny M.; Grigoriev, Igor V.; Lynch, Michael; Boore, Jeffrey L.

2011-02-04T23:59:59.000Z

364

PRITZKER INSTITUTE FOR BIOMEDICAL SCIENCE  

E-Print Network [OSTI]

PRITZKER INSTITUTE FOR BIOMEDICAL SCIENCE AND ENGINEERING Strategic Plan Summary #12;Pritzker Institute for Biomedical Science and Engineering for Strategic Plan Summary | 1 PRITZKER INSTITUTE FOR BIOMEDICAL SCIENCE AND ENGINEERING STRATEGIC PLAN SUMMARY 1. Grow the student body · Provide financial

Heller, Barbara

365

NERSC and JGI Join Forces to Tackle Genomics HPC - NERSC Center News, Apr  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

NERSC and JGI Join NERSC and JGI Join Forces to Tackle Genomics HPC NERSC and JGI Join Forces to Tackle Genomics HPC April 19, 2010 A torrent of data has been flowing from the advanced sequencing platforms at the Department of Energy Joint Genome Institute (JGI), among the world's leading generators of DNA sequence information for bioenergy and environmental applications. Last year, JGI generated over one trillion nucleotide letters of genetic code for its various user programs, an eight-fold increase in productivity from 2008. This year JGI expects to sequence five-times more data than the previous year, producing more than a petabyte of data. Kathy Yelick and Eddy Rubin in front of Cray XT5 supercomputer NERSC Division Director Kathy Yelick (left) and JGI Director Eddy Rubin

366

Development of stable lines of transgenic zebrafish (Danio rerio) to investigate genomic instability  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

stable lines of transgenic zebrafish (Danio rerio) to stable lines of transgenic zebrafish (Danio rerio) to investigate genomic instability Lahcen Jaafar 1 , Wendy W. Kuhne 2 , Xiayang Xie 3 , Xuan Zheng 1,4 , Jeffrey S. Mumm 3 , and William S. Dynan 1 1 Institute of Molecular Medicine and Genetics, Georgia Health Sciences University, Georgia 30912, USA, 2 Savannah River National Laboratory, Aiken SC 29808, 3 Department of Cellular Biology and Anatomy, Georgia Health Sciences University, Georgia 30912, USA, 4 Genetic Diagnosis Center, Zhongnan Hospital of Wuhan University, Wuhan, China The goal of our project is to investigate low-dose radiation induced-genomic instability. We describe the development of a whole-vertebrate model bearing a reporter transgene that is designed to indicate the presence of genome instability by somatic homologous

367

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)  

SciTech Connect (OSTI)

Desulfotomaculum ruminis Campbell and Postgate 1965 is a member of the large genus Desulfotomaculum which contains 30 species and is contained in the family Peptococcaceae. This species is of interest because it represents one of the few sulfate- reducing bacteria that have been isolated from the rumen. Here we describe the features of D. ruminis together with the complete genome sequence and annotation. The 3,969,014 bp long chromosome with a total of 3,901 protein-coding and 85 RNA genes is the second completed genome sequence of a type strain of the genus Desulfotomaculum to be pub- lished, and was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program 2009.

Spring, Stefan [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Visser, Michael [Wageningen University and Research Centre, The Netherlands; Lu, Megan [Los Alamos National Laboratory (LANL); Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Larimer, Frank W [ORNL; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Schaap, Peter J [Wageningen University and Research Centre, The Netherlands; Plugge, Caroline M. [Wageningen University and Research Centre, The Netherlands; Muyzer, Gerard [Universitate Amsterdam; Kuever, Jan [Bremen Institute for Materials Testing, Bremen, Germany; Pereira, Ines A. C. [Universidade Nova de Lisboa, Oeiras, Portugal; Parshina, Sofiya N. [Russian Academy of Sciences, Moscow; Bernier-Latmani, Rizlan [Ecole Polytechnique Federale de Lausanne, Switzerland; Stams, Alfons J. M. [Wageningen University and Research Centre, The Netherlands; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

2012-01-01T23:59:59.000Z

368

Insights from Human/Mouse genome comparisons  

SciTech Connect (OSTI)

Large-scale public genomic sequencing efforts have provided a wealth of vertebrate sequence data poised to provide insights into mammalian biology. These include deep genomic sequence coverage of human, mouse, rat, zebrafish, and two pufferfish (Fugu rubripes and Tetraodon nigroviridis) (Aparicio et al. 2002; Lander et al. 2001; Venter et al. 2001; Waterston et al. 2002). In addition, a high-priority has been placed on determining the genomic sequence of chimpanzee, dog, cow, frog, and chicken (Boguski 2002). While only recently available, whole genome sequence data have provided the unique opportunity to globally compare complete genome contents. Furthermore, the shared evolutionary ancestry of vertebrate species has allowed the development of comparative genomic approaches to identify ancient conserved sequences with functionality. Accordingly, this review focuses on the initial comparison of available mammalian genomes and describes various insights derived from such analysis.

Pennacchio, Len A.

2003-03-30T23:59:59.000Z

369

Form:Research Institution | Open Energy Information  

Open Energy Info (EERE)

Institution Jump to: navigation, search Add a Research or Development Institution Input your research or development institution name below to add to the registry. If your research...

370

Argonne Accelerator Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Fermilab Collaboration Fermilab Collaboration Lee Teng Scholarship Program Useful Links The Argonne Accelerator Institute Historical Document Collection Document Access Guide The documents in this collection are held in several repositories, some of which have restricted access. This guide explains the different types of access, and specifies the access levels for each repository. Repositories Name Access Argonne National Laboratory Document Open Access Argonne Research Library Hard Copy Only Beam Dynamics Newsletter Open Access DOE Information Bridge Open Access IEEE Xplore Library Subscription Required JACoW Open Access Journal of Applied Physics Subscription Required Nuclear Instruments & Methods in Physics Research, Section A Subscription Required Physical Review A Subscription Required

371

Standards for a new genomic era  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Science paper include David Bruce, Phil Hugenholtz, Nikos Kyrpides, Alla Lapidus, Sam Pitluck, and Jeremy Schmutz. Other collaborating institutions are the Sanger Institute and...

372

DOE Drives Big Data Push  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

2 Volume 9 Issue 2 2 Volume 9 Issue 2 From YAGS to Planetary Biology . . . . . . . . . . . . . . . 2 DOE Drives Big Data Push . . . . . . . . . . . . . . . . . . . . 3 Sweating Small Scale Genomics . . . . . . . . . . . . . . . 6 The Future of the DOE JGI . . . . . . . . . . . . . . . . . . . . 7 Save the Date for Meeting 8 . . . . . . . . . . . . . . . . . . . 8 also in this issue With a record 488 genomics researchers and bioinformaticians sitting in the Marriott Walnut Creek ballroom, New York Times science writer Carl Zimmer opened the DOE Joint Genome Institute's 7th Annual Genomics of Energy & Environment Meeting on March 20, 2012. Sharing his thoughts about being "On the Genome Beat," he informed the audience that he was worn down by seeing news about scientists successfully sequencing yet another genome sequence, and that "maybe some genomes shouldn't be written about." Zimmer's words engaged the audience in a discussion that

373

DOE Solar Decathlon: New York Institute of Technology: Instituting  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

New York Institute of Technology's solar house in its permanent location at the U.S. Merchant Marine Academy. New York Institute of Technology's solar house in its permanent location at the U.S. Merchant Marine Academy. Enlarge image Green Machine/Blue Space relies on a hydrogen fuel cell to convert and store energy collected by the house's photovoltaic system. (Courtesy of Kevin Rodgers/U.S. Merchant Marine Academy) Who: New York Institute of Technology What: Green Machine/ Blue Space Where: U.S. Merchant Marine Academy 300 Steamboat Road Kings Point, NY 11024 Map This House Public tours: Not available Solar Decathlon 2005 New York Institute of Technology: Instituting Technology New York Institute of Technology partnered with the U.S. Merchant Marine Academy to develop a solar-powered house for the U.S. Department of Energy Solar Decathlon 2005. The house, called Green Machine/Blue Space, was

374

Institution Name Institution Name Address Place Zip Notes Website Region  

Open Energy Info (EERE)

Institution Name Institution Name Address Place Zip Notes Website Region Institution Name Institution Name Address Place Zip Notes Website Region ARCH Venture Partners Texas ARCH Venture Partners Texas Bridgepoint Parkway Bldg Suite Austin Texas http www archventure com Texas Area ARCH Venture Partners Washington ARCH Venture Partners Washington Second Avenue Suite Seattle Washington http www archventure com Pacific Northwest Area African Wind Energy Association South Africa African Wind Energy Association South Africa South Africa http www afriwea org en south africa htm Alternative Energy Institute Alternative Energy Institute russell long blvd Canyon Texas http www windenergy org Texas Area Applied Process Engineering Laboratory Applied Process Engineering Laboratory Hills Street Suite Richland Washington http www apel org

375

Tokyo Institute of Technology Tokyo Institute of Technology  

E-Print Network [OSTI]

Tokyo Institute of Technology 2004 #12; Tokyo Institute of Technology k O(n-k/2) (Efron et al 1996) 2O(B) (Shimodaira 2002, 2004) O(B) #12; Tokyo Institute of Technology of Technology 1 2 3 4 5 1 2 3 4 5 1 2 3 4 5 1 23 4 5 1 2 3 4 5 1 2 3 4 5 1 2 3 4 5 1 23 4 5 1 2 3 4 5

Shimodaira, Hidetoshi

376

Minority Educational Institution Student Partnership Program...  

Broader source: Energy.gov (indexed) [DOE]

Development Minority Educational Institution Student Partnership Program (MEISPP) Minority Educational Institution Student Partnership Program (MEISPP) Our Minority Educational...

377

Plumbing Manufacturer's Institute Ex Parte Communication Regarding...  

Broader source: Energy.gov (indexed) [DOE]

Plumbing Manufacturer's Institute Ex Parte Communication Regarding Showerheads Plumbing Manufacturer's Institute Ex Parte Communication Regarding Showerheads Letter to Department...

378

Mapping Soil Carbon from Cradle to Grave: Identifying the Microbial Blueprint for Root-carbon Transformations in Soil  

SciTech Connect (OSTI)

Erin Nuccio, Lawrence Livermore National Laboratory, at the 9th Annual Genomics of Energy & Environment Meeting on March 19, 2014 in Walnut Creek, Calif.

Nuccio, Erin [Lawrence Livermore National Laboratory

2014-03-19T23:59:59.000Z

379

Unlocking Plant Metabolic Diversity  

SciTech Connect (OSTI)

Anne Osbourn, John Innes Centre, UK, at the 9th Annual Genomics of Energy & Environment Meeting on March 19, 2014 in Walnut Creek, Calif.

Osbourn, Anne [John Innes Centre

2014-03-19T23:59:59.000Z

380

Ecogenomics Sheds Light on Synergistic Networks of Microbial Dark Matter in a  

SciTech Connect (OSTI)

Masaru Nobu, University of Illinois at Urbana-Champaign, speaking at the 9th Annual Genomics of Energy & Environment Meeting on March 19, 2014 in Walnut Creek, Calif.

Nobu, Masaru [University of Illinois at Urbana-Champaign

2014-03-19T23:59:59.000Z

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


381

Pectinases Link Early Fungal Evolution to the Land Plant Lineage  

SciTech Connect (OSTI)

Mary Berbee, University of British Columbia, Canada, speaking at the 9th Annual Genomics of Energy & Environment Meeting on March 19, 2014 in Walnut Creek, Calif.

Berbee, Mary [University of British Columbia

2014-03-19T23:59:59.000Z

382

Understanding the Forest Microbiome: A Fungal Perspective  

SciTech Connect (OSTI)

Rytas Vilgalys, Duke University, speaking at the 9th Annual Genomics of Energy & Environment Meeting on March 19, 2014 in Walnut Creek, Calif

Vilgalys, Rytas [Duke University

2014-03-19T23:59:59.000Z

383

Partnering Institution Name Partnering Institution Name Place Type  

Open Energy Info (EERE)

Partnering Institution Name Partnering Institution Name Place Type Partnering Institution Name Partnering Institution Name Place Type of Partnership Partner Center Partner Year Partner Description Link Technologies Technologies North Lexington Massachusetts Incubator National Center for Photovoltaics M M St Paul Minnesota CRADA http www nrel gov pv pv manufacturing html A O Smith A O Smith Milwaukee Wisconsin Test Evaluation Partner Electricity Resources Building Systems Integration A123Systems A123Systems Watertown Massachusetts CRADA Transportation Technologies and Systems http www nrel gov news press html AAON AAON Tulsa Oklahoma Test Evaluation Partner Electricity Resources Building Systems Integration AQUA Products AQUA Products Prosperity South Carolina Test Evaluation Partner Electricity Resources Building Systems Integration

384

Institution Name Institution Name Address Place Zip Notes Website...  

Open Energy Info (EERE)

IEn Institute of Power Engineering IEn Warsaw Poland http www ien com pl home Jordan National Energy Research Center Jordan National Energy Research Center P O Box Al...

385

History of the DOE Human Genome Program  

Office of Scientific and Technical Information (OSTI)

History of the DOE Human Genome Program History of the DOE Human Genome Program The following history is taken from the U.S. Department of Energy 1991-91 Human Genome Program Report (June 1992). This is an archived item. A brief history of the U.S. Department of Energy (DOE) Human Genome Program will be useful in a discussion of the objectives of the DOE program as well as those of the collaborative U.S. Human Genome Project. The Office of Health and Environmental Research (OHER) of DOE and its predecessor agencies--the Atomic Energy Commission and the Energy Research and Development Administration--have long sponsored research into genetics, both in microbial systems and in mammals, including basic studies on genome structure, replication, damage, and repair and the consequences of genetic

386

PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants  

Science Journals Connector (OSTI)

...requires a centralized plant genomics infrastructure where all information generated by different...Vandepoele and Van de Peer, 2005) are hybrid systems integrating gene information...this genome information, a centralized infrastructure is required where all data generated...

Sebastian Proost; Michiel Van Bel; Lieven Sterck; Kenny Billiau; Thomas Van Parys; Yves Van de Peer; Klaas Vandepoele

2009-12-29T23:59:59.000Z

387

Agricultural Microbes Genome 2: First Glimpses into the Genomes of Plant-Associated Microbes  

Science Journals Connector (OSTI)

...occurring. This new era of research allows a comprehensive study...Genome Conference. Meeting abstracts are archived on the World Wide...United States Department of Energy, Germantown, MD) discussed...Science Foundation Plant Genome Research Program, will also include...

Sophien Kamoun; Saskia A. Hogenhout

388

Human-mouse comparative genomics: successes and failures to reveal functional regions of the human genome  

SciTech Connect (OSTI)

Deciphering the genetic code embedded within the human genome remains a significant challenge despite the human genome consortium's recent success at defining its linear sequence (Lander et al. 2001; Venter et al. 2001). While useful strategies exist to identify a large percentage of protein encoding regions, efforts to accurately define functional sequences in the remaining {approx}97 percent of the genome lag. Our primary interest has been to utilize the evolutionary relationship and the universal nature of genomic sequence information in vertebrates to reveal functional elements in the human genome. This has been achieved through the combined use of vertebrate comparative genomics to pinpoint highly conserved sequences as candidates for biological activity and transgenic mouse studies to address the functionality of defined human DNA fragments. Accordingly, we describe strategies and insights into functional sequences in the human genome through the use of comparative genomics coupled wit h functional studies in the mouse.

Pennacchio, Len A.; Baroukh, Nadine; Rubin, Edward M.

2003-05-15T23:59:59.000Z

389

Genomes as geography: using GIS technology to build interactive genome feature maps  

Science Journals Connector (OSTI)

Many commonly used genome browsers display sequence annotations and related attributes as horizontal data tracks that can be toggled on and off according to user preferences. Most genome browsers use only simple ...

Mary E Dolan; Constance C Holden; M Kate Beard; Carol J Bult

2006-09-01T23:59:59.000Z

390

Argonne Accelerator Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Welcome Welcome In 2006, Argonne laboratory director Robert Rosner formed the AAI as a focal point for accelerator initiatives. The institute works to utilize Argonne's extensive accelerator resources, to enhance existing facilities, to determine the future of accelerator development and construction, and to oversee a dynamic and acclaimed accelerator physics portfolio. I invite you to look around the content of this web site. Accelerators at Argonne describes our rich heritage in this field, particularly with respect to the development and support of user facilities. Initiatives describes the things we are hoping to do, and Research & Development discusses our research portfolio. If you are a graduate or undergraduate student wishing to pursue a career in accelerator science or technology, please see Educational

391

Argonne Accelerator Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

ZGS -- Zero Gradient Synchrotron (operation: 1963 - 1979) ZGS -- Zero Gradient Synchrotron (operation: 1963 - 1979) The ZGS was a 12 GeV weak-focusing proton synchrotron. It was the first high energy physics accelerator located between the U.S. coasts. The ZGS was also the first synchrotron to accelerate spin polarized protons and the first to use H-minus injection. Other noteworthy features of the ZGS program were the large number of university-based users and the pioneering development of large superconducting magnets for bubble chambers and beam transport. References - Document Access Guide History of the ZGS, Argonne, 1979, American Institute of Physics, AIP Conference Proceedings No. 60 (1980). (Located in the Argonne Research Library) High Energy Physics at Argonne National Laboratory, A. Crewe, R.

392

Argonne Accelerator Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

The Argonne Accelerator History Document Collection The Argonne Accelerator History Document Collection The Argonne Accelerator Institute (AAI) has established a special collection of archived documents which describe notable Argonne accelerator work of the past 50 years. A list of such Argonne Accelerator Projects is given below. Each project is described briefly, with links to archived documents in this collection. This collection includes important Argonne accelerator documents which may have become difficult to locate, as well as ones which have broad scope. In keeping with its historical purpose, this collection only covers work done 10 or more years ago. Many of the listed documents are available online. We hope to make more of them available online in the future. [For several of the projects, interesting additional online documents can be found by

393

Cyclotron Institute Upgrade Project  

SciTech Connect (OSTI)

The Cyclotron Institute at Texas A&M University has upgraded its accelerator facilities to extend research capabilities with both stable and radioactive beams. The upgrade is divided into three major tasks: (1) re-commission the K-150 (88”) cyclotron, couple it to existing beam lines to provide intense stable beams into the K-500 experimental areas and use it as a driver to produce radioactive beams; (2) develop light ion and heavy ion guides for stopping radioactive ions created with the K-150 beams; and (3) transport 1+ ions from the ion guides into a charge-breeding electron-cyclotron-resonance ion source (CB-ECR) to produce highly-charged radioactive ions for acceleration in the K-500 cyclotron. When completed, the upgraded facility will provide high-quality re-accelerated secondary beams in a unique energy range in the world.

Clark, Henry [Texas A& M University; Yennello, Sherry [Texas A& M University; Tribble, Robert [Texas A& M University

2014-08-26T23:59:59.000Z

394

Initial sequencing and comparative analysis of the mouse genome  

E-Print Network [OSTI]

Initial sequencing and comparative analysis of the mouse genome Mouse Genome Sequencing Consortium ........................................................................................................................................................................................................................... The sequence of the mouse genome is a key informational tool for understanding the contents of the human genome collaboration to produce a high-quality draft sequence of the mouse genome. We also present an initial

Eddy, Sean

395

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies  

Science Journals Connector (OSTI)

Sequencing the genomes of 48 strains of Sinorhizobium reveals a large heterogeneity in strategies for colonization in this family

Masayuki Sugawara; Brendan Epstein; Brian D Badgley; Tatsuya Unno; Lei Xu; Jennifer Reese; Prasad Gyaneshwar; Roxanne Denny; Joann Mudge; Arvind K Bharti; Andrew D Farmer; Gregory D May; Jimmy E Woodward; Claudine Médigue; David Vallenet; Aurélie Lajus; Zoé Rouy; Betsy Martinez-Vaz; Peter Tiffin; Nevin D Young; Michael J Sadowsky

2013-02-20T23:59:59.000Z

396

Accounting Fraud and Institutional Investors.  

E-Print Network [OSTI]

??This dissertation examines institutional investors' trading behavior in a sample of 322 firms alleged in Accounting, Auditing, and Enforcement Releases to have manipulated their accounting… (more)

Larson, Chad R.

2008-01-01T23:59:59.000Z

397

Research and Institutional Integrity Office  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

The Research and Institutional Integrity Office (RIIO) serves as a focal point for ethics and compliance assurance at the Berkeley Lab in three main areas of responsibility:...

398

Fundamental Interactions - Research - Cyclotron Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Cyclotron Institute, but also exploit the facilities at the University of Jyvaskyla in Finland and at the TRIUMF Laboratory in Canada. Nuclear reactions can be used to synthesize...

399

Institut fr Werkzeugmaschinen und Fabrikbetrieb  

E-Print Network [OSTI]

Institut für Werkzeugmaschinen und Fabrikbetrieb Fachgebiet Montagetechnik und Fabrikbetrieb Univ h/Monat) Ausschreibungsnummer: MF-13-RH-01 Die Arbeiten im Fachgebiet Montagetechnik und

Berlin,Technische Universität

400

Continuous Change Institutional Change Principle  

Broader source: Energy.gov [DOE]

Because it takes time to establish institutional change, Federal agencies need multiyear plans that continuously work to achieve, reinforce, and improve significant and persistent sustainability...

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


401

News Releases | Critical Materials Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Releases CMI hosts EU, Japan to discuss global critical materials strategy, September 10, 2014 Five Critical Materials Institute researchers named Most Influential Scientific Minds...

402

Generalized genetical genomics : advanced methods and applications.  

E-Print Network [OSTI]

??Generalized genetical genomics (GGG) is a systems genetics approach that combines the analysis of genetic variation with population-wide assessment of variation in molecular traits in… (more)

Li, Yang

2010-01-01T23:59:59.000Z

403

JGI User Meeting 2007  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Second Annual Second Annual DOE Joint Genome Institute User Meeting Marriott Hotel Walnut Creek, California March 28-30, 2007 The U.S. Department of Energy Joint Genome Institute (JGI) welcomed its users and collaborators, as well as prospective new users, to the second annual JGI User Meeting. This international gathering of researchers with an interest in sequence-based science offered three days of user presentations, tours, workshops, and poster sessions. This was a unique opportunity to meet fellow users and JGI staff. Sessions and posters in the fields of microbial genomics, microbial communities, eukaryotic genomics, and genome technologies were presented. ©2006-2007, The Regents of the University of California. Last updated May 9, 2007. Disclaimer | Webmaster Agenda

404

MIENS Minimum Information about an ENvironmental Sequence and The GSC's Not-for-Profit (GSC8 Meeting)  

ScienceCinema (OSTI)

The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding Research Coordination Network from the National Science Foundation and was held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Pelin Yilmaz of the Max Planck Institute-Bremen talks about the MIENS specification and Eugene Kolker of Seattle Children's Hospital discusses the GSC's non-for-profit at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009

Yilmaz, Pelin [Max Planck Institute - Bremen]; Kolker, Eugene [Seattle Childrens Hospital

2011-04-29T23:59:59.000Z

405

Update on the Maize Genome Sequencing Project The Maize Genome Sequencing Project  

E-Print Network [OSTI]

Update on the Maize Genome Sequencing Project The Maize Genome Sequencing Project Vicki L. Chandler Genome Sequencing Project. The momentum for this endeavor has been building within the maize (Zea mays- sion. This Update reviews the project goals and the expected deliverables deriving from the two funded

Brendel, Volker

406

SKIN CANCER INSTITUTE THE CANCER INSTITUTES AT NORTHWESTERN MEDICINE  

E-Print Network [OSTI]

SKIN CANCER INSTITUTE THE CANCER INSTITUTES AT NORTHWESTERN MEDICINE Melanoma The Most Lethal Form advances in nanotechnology to increase our understanding of melanoma and to develop new tools into controllable cells or target them for destruction. Investigators also are using nanotechnology to understand

Engman, David M.

407

1. Awarding Institution/Body Imperial College London 2. Teaching Institution Imperial College London  

E-Print Network [OSTI]

in the following areas. ` Knowledge and understanding A. Knowledge and understanding of: 1. Key topics in Genomics and Bioinformatics, including genome mapping, sequence analysis, transcriptomics, host/pathogen genomics, use of DNA/protein databases, functional and comparative genomics, phylogenetic analysis. 2. Key topics in Macromolecular

408

Exploring the early origins of the synapse by comparative genomics  

Science Journals Connector (OSTI)

...origins of the synapse by comparative genomics Kenneth S Kosik * * ( kosik@lifesci...the existing core genes. A comparative genomics approach to one cellular machine-the...validation of these views. A comparative genomics approach to the entire cellulome may...

2009-01-01T23:59:59.000Z

409

Bioadhesion in ascidians: a developmental and functional genomics perspective  

Science Journals Connector (OSTI)

...ascidians: a developmental and functional genomics perspective Roberta Pennati 1 Ute Rothbacher...knowledge from a developmental and functional genomics point of view can advance our understanding...bioadhesion|ascidians|papillae|functional genomics|gene networks| 1. Introduction The...

2015-01-01T23:59:59.000Z

410

Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa  

Science Journals Connector (OSTI)

...recognized within the Brassicaceae family (Figure 1A). Within lineage...Mummenhoff, K. (2011). Cabbage family affairs: The evolutionary...genomics in the Brassicaceae: Building blocks of crucifer genomes...many other plant species by multi-genome comparison. Additionally...

Feng Cheng; Terezie Mandáková; Jian Wu; Qi Xie; Martin A. Lysak; Xiaowu Wang

2013-05-07T23:59:59.000Z

411

Diversity and genomics of Antarctic marine micro-organisms  

Science Journals Connector (OSTI)

...Clarke and N. Johnston Diversity and genomics of Antarctic marine micro-organisms...larger scale. Insights from initial genomics studies on both cultivated organisms...marine bacteria|marine microbial genomics|bacterioplankton diversity|Southern...

2007-01-01T23:59:59.000Z

412

ORIGINAL ARTICLE Comparative genomics of two newly isolated  

E-Print Network [OSTI]

ORIGINAL ARTICLE Comparative genomics of two newly isolated Dehalococcoides strains of Microbiology, Cornell University, Ithaca, NY, USA Comparative genomics of Dehalococcoides strains and an enrichment were performed using a microarray targeting genes from all available sequenced genomes

Alvarez-Cohen, Lisa

413

Forensic Genomics: Kin Privacy, Driftnets and Other Open Questions  

E-Print Network [OSTI]

, Human Genome Project, Cold and hot hits, Data protection, Informational privacy. 1. INTRODUCTIONForensic Genomics: Kin Privacy, Driftnets and Other Open Questions Frank Stajano University sequencing the entire genome of a person becomes sufficiently cheap as to become a routine operation

Cambridge, University of

414

The Evolution of the Anopheles 16 Genomes Project  

E-Print Network [OSTI]

We report the imminent completion of a set of reference genome assemblies for 16 species of Anopheles mosquitoes. In addition to providing a generally useful resource for comparative genomic analyses, these genome sequences ...

Waterhouse, Robert

415

Abstract LB-317: Interactive pipeline for reproducible genomics analyses  

Science Journals Connector (OSTI)

...Interactive pipeline for reproducible genomics analyses Michael Considine 1 Hilary S...Jersey, Ewing Township, NJ. Automated Genomics Analysis (AGA) is a program to analyze...to interactively perform reproducible genomics analysis using clinical covariates in...

Michael Considine; Hilary S. Parker; Yingying Wei; Xiao X. Xia; Leslie Cope; Michael F. Ochs; Elana J. Fertig

2014-10-01T23:59:59.000Z

416

Abstract IA14: Functional genomics and cancer vulnerabilities  

Science Journals Connector (OSTI)

...Cancer Research. November 2014 meeting-abstract Genomics Genomics: Oral Presentations - Invited Abstracts Abstracts...2013; San Diego, CA Abstract IA14: Functional genomics and cancer vulnerabilities William C. Hahn Dana-Farber...

William C. Hahn

2014-11-01T23:59:59.000Z

417

Abstract 5087: UCSC Cancer Genomics Browser 2.0  

Science Journals Connector (OSTI)

...Abstract nr 3720. doi:1538-7445.AM2012-3720 The Global Cancer Genomics Consortium: interfacing genomics and cancer medicine. | The Global Cancer Genomics Consortium (GCGC) is an international collaborative platform that amalgamates...

Jingchun Zhu; Brian Craft; Teresa Swatloski; Kyle Ellrott; Mary Goldman; Christopher Wilks; Singer Ma; Christopher Szeto; Eric Collisson; David Haussler

2012-04-15T23:59:59.000Z

418

Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)  

SciTech Connect (OSTI)

Chromohalobacter salexigens is one of nine currently known species of the genus Chromoha- lobacter in the family Halomonadaceae. It is the most halotolerant of the so-called mod- erately halophilic bacteria currently known and, due to its strong euryhaline phenotype, it is an established model organism for prokaryotic osmoadaptation. C. salexigens strain 1H11T and Halomonas elongata are the first and the second members of the family Halomonada- ceae with a completely sequenced genome. The 3,696,649 bp long chromosome with a total of 3,319 protein-coding and 93 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2004.

Copeland, A [U.S. Department of Energy, Joint Genome Institute; O'Connor, Kathleen [Purdue University; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Berry, Kerrie W. [United States Department of Energy Joint Genome Institute; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Vargas, Carmen [University of Seville; Nieto, Joaquin J. [University of Seville; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Csonka, Laszlo N. [Purdue University; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

419

Determine Institutional Change Sustainability Goals  

Broader source: Energy.gov [DOE]

The first step in the institutional change process is defining your Federal agency's sustainability goals. That is, decide what outcomes are desired (or required) over what period of time. Behavioral, organizational, and institutional changes typically are means to achieve desired energy, resource, or greenhouse gas emission outcomes. They are not ends in and of themselves.

420

WANGER INSTITUTE FOR SUSTAINABLE ENERGY  

E-Print Network [OSTI]

WANGER INSTITUTE FOR SUSTAINABLE ENERGY RESEARCH (WISER) Strategic Plan Summary #12;WISER Strategic Plan Summary | 1 WANGER INSTITUTE FOR SUSTAINABLE ENERGY RESEARCH (WISER) STRATEGIC PLAN SUMMARY 1 by developing and supporting undergraduate research in energy and sustainability related areas. · Develop co

Heller, Barbara

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


421

5 - Yunnan and regional institutions  

Science Journals Connector (OSTI)

Abstract: This chapter looks at Yunnan’s role in and relationships to regional institutions within China and those spanning China’s southwest and southeast and south Asia. It takes a historical perspective towards these developments, and describes how ideas of the province becoming a Chinese bridgehead to Asia have found practical expression through institutions.

Tim Summers

2013-01-01T23:59:59.000Z

422

INSTITUTE ON ASSETS & SOCIAL POLICY  

E-Print Network [OSTI]

INSTITUTE ON ASSETS & SOCIAL POLICY Tatjana Meschede Thomas M. Shapiro Laura Sullivan Jennifer Wheary LIVING LONGER ON LESS REPORT #3 #12;DevelopeD by: The Institute on Assets and Social Policy The Heller School for Social Policy and Management Brandeis University in collaboration with: Dmos | www

Snider, Barry B.

423

Michigan Institute for Plasma Sci-  

E-Print Network [OSTI]

This talk will focus on the achievements of the Drexel Plasma Institute in direct application of plasmasMichigan Institute for Plasma Sci- ence and Engi- neering Seminar Plasma Medicine: Mechanisms of Direct Non-Thermal Plasma Interaction with Living Tissue Prof. Alexander Fridman Drexel University

Shyy, Wei

424

DEPARTMENTOFHEALTHANDHUMANSERVICES National Institutes of Health  

E-Print Network [OSTI]

DEPARTMENTOFHEALTHANDHUMANSERVICES National Institutes of Health Office of Extramural Research 9000 Institutes of Health (NIH), part of the Department of Health and Human Services (DHHS), is the principal health research agency of the U.S. Federal Government. The Office of Extramural Research (OER) provides

Baker, Chris I.

425

Genome Biology 2004, 5:343 commentreviewsreportsdepositedresearchinteractionsinformationrefereedresearch  

E-Print Network [OSTI]

://genomebiology.com/2004/5/9/343 © 2004 BioMed Central Ltd A report on the Keystone Symposium `Structural Genomics', held-dollar-plus folly? Two concurrent Keystone Symposia, `Structural Genomics' and `Frontiers in Structural Biology set up an auto- mated pipeline to annotate proteins of known structure but unknown function. The push

426

Upgraded IMG Data Management System Released by DOE JGI to Eager User  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

4, 2007 4, 2007 Upgraded Integrated Microbial Genomes (IMG) Data Management System Released by DOE JGI to Eager User Community WALNUT CREEK, CA--A powerful set of computational tools established to ease the visualization and exploration of genomes flooding the public domain is now available in IMG Version 2.3--the Integrated Microbial Genomes (IMG) data management system hosted by the U.S. Department of Energy Joint Genome Institute (DOE JGI). The content of IMG 2.3, upgraded with new microbial genomes from the Version 23 release of the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) collection, now includes fungi, protists (eukaryotic unicellular organisms), and plant genomes to enhance the breadth of comparative analysis. A new addition of particular interest to

427

Functional Genomics of Nervous System Development and Disease .  

E-Print Network [OSTI]

??The goal of functional genomics is to elucidate the relationship between an organism's genotype and phenotype. A key characteristic of functional genomics is the use… (more)

Miller, Michael Ryan

2011-01-01T23:59:59.000Z

428

SciTech Connect: Achievements of structural genomics  

Office of Scientific and Technical Information (OSTI)

Achievements of structural genomics Citation Details In-Document Search Title: Achievements of structural genomics You are accessing a document from the Department of Energy's...

429

JGI Case Study (NERSC-BER Workshop, Sep 11 2012).pptx  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Computing Requirements Shane Canon, Rob Egan, David Goodstein Victor M Markowitz NERSC BER Requirements for 2017 September 11-12, 2012 Established in 1999, located in Walnut Creek Supported by the DOE Office of Science. Budget of ~70 Million/ yr ~ 300 Employees Mission User facility for large scale genomics to enable bioenergy & environmental research DOE Joint Genome Institute (JGI) JGI Programs Plants Fungi Microbes Metagenomes Bioenergy Carbon Cycling Biogeochemistry Mission Areas Energy and Environmental Science Experimental Data Generation Data Interpretation User Interactions Sequencing Data Distribution Assembly of Sequence Data 4 30 Tb Sequence data Science publications Annotated Datasets: Genes Assembled Datasets Integrated Datasets:

430

Comparative genomics analysis of Liberibacter species to elucidate pathogenesis and culturability  

E-Print Network [OSTI]

Vol. 1 (2014) Comparative genomics analysis of Liberibacterof citrus, comparative genomics of this strain with other

Leonard, Michael T.; Fagen, Jennie R.; McCullough, Connor M.; Davis-Richardson, Austin G.; Davis, Michael J.; Triplett, Eric W.

2014-01-01T23:59:59.000Z

431

Proteogenomics : applications of mass spectrometry at the interface of genomics and proteomics  

E-Print Network [OSTI]

of proteomics and genomics to unravel the specificities ofetry and comparative genomics to analyze multiple genomes,”genome,” Comp. Funct. Genomics, vol. 3, no. 3, pp. 244–253,

Castellana, Natalie

2012-01-01T23:59:59.000Z

432

Plant Genomics Vol 3.pmd  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Populus Populus Genome Initiative Stephen DiFazio Department of Biology, West Virginia University, Morgantown, West Virginia 26508-6057 USA Email: spdifazio@mail.wvu.edu 8 1 INTRODUCTION 1.1 Background on Populus Biology The genus Populus consists of about 29 species organized into six major sections that occur primarily in the Northern Hemisphere (Eckenwalder 1996). Species from the different sections of the genus have diverse ecological characteristics. Two of the most economically important sections (Aigeiros and Tacamahaca) contain species collectively known as cottonwoods. These occur mostly in riparian zones and are characterized by primarily ruderal life history, dominating early successional stages and thriving on flood-mediated disturbance (Braatne et al. 1996; Karrenberg et al. 2002). The other major section of the genus (section Populus,

433

Genome-Wide siRNA-Based Functional Genomics of Pigmentation Identifies Novel Genes and Pathways That Impact Melanogenesis in Human Cells  

E-Print Network [OSTI]

siRNA-Based Functional Genomics of Pigmentation Identifiespoorly understood. Functional genomics based on RNA-mediatedof RNAi-based functional genomics to identify novel genes,

2008-01-01T23:59:59.000Z

434

Assessment of Research Quality Institute for Biodiversity  

E-Print Network [OSTI]

Assessment of Research Quality Institute for Biodiversity and Ecosystem Dynamics January 2007 Faculty of Science #12;Evaluation report Institute for Biodiversity and Ecosystem Dynamics Universiteit of the Universiteit van Amsterdam, the Institute for Biodiversity and Ecosystem Dynamics (IBED) was one

van Rooij, Robert

435

Chapter 18 - The Genomics of Cladoceran Physiology  

Science Journals Connector (OSTI)

Recent advances in genomic approaches and their increasing application to a wide range of taxa are contributing to the rapid development of the field of physiological genomics. Understanding the relationship between organisms and their environment is central to this field that focuses on genomic exploration of the physiological mechanisms that underlie organism-environment interactions and phenotypic plasticity. Cladoceran crustaceans have long been the subject of physiological investigation and are now tractable and versatile models for physiological genomics. A wide diversity of habitats and physiologies along with the recent development of genomic tools, most notably in the genus Daphnia, make cladocerans a compelling taxonomic group to investigate the relationship between genome structure, function and physiological mechanisms in a comparative framework that will also illuminate the evolutionary processes underlying these mechanisms. In this chapter we highlight a series of case studies to illustrate the potential to use cladocerans to illuminate the physiological mechanisms that mediate the response of organisms to environmental challenges. We focus on the genus Daphnia because of the rich history in ecological, evolutionary, and physiological research on this group and the recent investigations into its ecoresponsive genome. Finally, we prospectively outline productive avenues for future investigation.

Dörthe Becker; Kay Van Damme; Elizabeth Turner; Joseph R. Shaw; John K. Colbourne; Michael E. Pfrender

2014-01-01T23:59:59.000Z

436

Genome Sequence of the Palaeopolyploid soybean  

SciTech Connect (OSTI)

Soybean (Glycine max) is one of the most important crop plants for seed protein and oil content, and for its capacity to fix atmospheric nitrogen through symbioses with soil-borne microorganisms. We sequenced the 1.1-gigabase genome by a whole-genome shotgun approach and integrated it with physical and high-density genetic maps to create a chromosome-scale draft sequence assembly. We predict 46,430 protein-coding genes, 70percent more than Arabidopsis and similar to the poplar genome which, like soybean, is an ancient polyploid (palaeopolyploid). About 78percent of the predicted genes occur in chromosome ends, which comprise less than one-half of the genome but account for nearly all of the genetic recombination. Genome duplications occurred at approximately 59 and 13 million years ago, resulting in a highly duplicated genome with nearly 75percent of the genes present in multiple copies. The two duplication events were followed by gene diversification and loss, and numerous chromosome rearrangements. An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.

Schmutz, Jeremy; Cannon, Steven B.; Schlueter, Jessica; Ma, Jianxin; Mitros, Therese; Nelson, William; Hyten, David L.; Song, Qijian; Thelen, Jay J.; Cheng, Jianlin; Xu, Dong; Hellsten, Uffe; May, Gregory D.; Yu, Yeisoo; Sakura, Tetsuya; Umezawa, Taishi; Bhattacharyya, Madan K.; Sandhu, Devinder; Valliyodan, Babu; Lindquist, Erika; Peto, Myron; Grant, David; Shu, Shengqiang; Goodstein, David; Barry, Kerrie; Futrell-Griggs, Montona; Abernathy, Brian; Du, Jianchang; Tian, Zhixi; Zhu, Liucun; Gill, Navdeep; Joshi, Trupti; Libault, Marc; Sethuraman, Anand; Zhang, Xue-Cheng; Shinozaki, Kazuo; Nguyen, Henry T.; Wing, Rod A.; Cregan, Perry; Specht, James; Grimwood, Jane; Rokhsar, Dan; Stacey, Gary; Shoemaker, Randy C.; Jackson, Scott A.

2009-08-03T23:59:59.000Z

437

Home | Glenn T. Seaborg Institute  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

T. Seaborg Institute T. Seaborg Institute Home Research Nuclear Forensics & Attribution Environmental Radiochemistry Super Heavy Element Discovery Scientific Staff Jobs: Internships & Postdocs Facilities Dr. Seaborg Publications & Links Mission Established in 1991, the LLNL branch of the Glenn T. Seaborg Institute conducts collaborative research between LLNL and the academic community in radiochemistry and nuclear forensics. The Seaborg Institute serves as a national center for the education and training of undergraduate and graduate students, postdocs and faculty in transactinium science. Seaborg Staff Contacts Annie Kersting Director kersting1@llnl.gov 925-423-3338 Ian Hutcheon Deputy Director hutcheon1@llnl.gov 925-422-4481 Dawn Shaughnessy Deputy Director shaughnessy2@llnl.gov

438

Ecologic Institute | Open Energy Information  

Open Energy Info (EERE)

Institute Institute Jump to: navigation, search Logo: Ecologic Institute Name Ecologic Institute Address Pfalzburger Strasse 43/44 Place Berlin, Germany Year founded 1995 Phone number +49 (30) 86880-0 Website http://ecologic.eu/ Coordinates 52.493143445°, 13.3453845978° Loading map... {"minzoom":false,"mappingservice":"googlemaps3","type":"ROADMAP","zoom":14,"types":["ROADMAP","SATELLITE","HYBRID","TERRAIN"],"geoservice":"google","maxzoom":false,"width":"600px","height":"350px","centre":false,"title":"","label":"","icon":"","visitedicon":"","lines":[],"polygons":[],"circles":[],"rectangles":[],"copycoords":false,"static":false,"wmsoverlay":"","layers":[],"controls":["pan","zoom","type","scale","streetview"],"zoomstyle":"DEFAULT","typestyle":"DEFAULT","autoinfowindows":false,"kml":[],"gkml":[],"fusiontables":[],"resizable":false,"tilt":0,"kmlrezoom":false,"poi":true,"imageoverlays":[],"markercluster":false,"searchmarkers":"","locations":[{"text":"","title":"","link":null,"lat":52.493143445,"lon":13.3453845978,"alt":0,"address":"","icon":"","group":"","inlineLabel":"","visitedicon":""}]}

439

Hydraulic Institute Mission and Vision:  

Broader source: Energy.gov (indexed) [DOE]

Institute Mission and Vision: Institute Mission and Vision: Vision: To be a global authority on pumps and pumping systems. Mission: To be a value-adding resource to member companies and pump users worldwide by: * Developing and delivering comprehensive industry standards. * Expanding knowledge by providing education and tools for the effective application, testing, installation, operation and maintenance of pumps and pumping systems. * Serving as a forum for the exchange of industry information. The Hydraulic Institute is a non-profit industry (trade) association established in 1917. HI and its members are dedicated to excellence in the engineering, manufacture, and application of pumping equipment. The Institute plays a leading role in the development of pump standards in North America and worldwide. HI

440

Community Development Financial Institutions Fund  

Broader source: Energy.gov [DOE]

The U.S. Department of Treasury is accepting applications on the Community Development Financial Institutions (CDFI) Fund, which has opened the fiscal year 2015 funding round for the CDFI Program...

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


441

Great Cities Institute Comparative Urbanisms  

E-Print Network [OSTI]

Great Cities Institute Comparative Urbanisms Seminar Series Governance and Social Innovation those "socially innovative strategies" undertaken by citizens in different European cities, identity, governance and social innovation. Her upcoming publications include "Multilevel Governance

Illinois at Chicago, University of

442

Multiple Motivations Institutional Change Principle  

Broader source: Energy.gov [DOE]

The multiple motivations principle suggests that a portfolio approach—rather than a single strategy—may be required to achieve change. Research demonstrates that people and institutions adopt new...

443

The Institutes of Technology [as amended by Institutes of Technology,] (Amendment, Act, 1963.  

E-Print Network [OSTI]

The Institutes of Technology Act, 1961 [as amended by Institutes of Technology,] (Amendment, Act, 1963.] Indian Institute of Technology, Powai, Bombay ­ 400 076 #12;THE INSTITUTES OF TECHNOLOGY ACT. THE SCHEDULE #12;THE INSTITUTES OF TECHNOLOGY, ACT, 1961 No. 59 of 1961 [as amended by Institutes of Technology

Sivalingam, Krishna M.

444

Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134(T))  

SciTech Connect (OSTI)

Saccharomonospora cyanea Runmao et al. 1988 is a member of the genus Saccharomonospora in the family Pseudonocardiaceae that is moderately well characterized at the genome level thus far. Members of the genus Saccharomonospora are of interest because they originate from diverse habitats, such as soil, leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they probably play a role in the primary degradation of plant material by attacking hemicellulose. Species of the genus Saccharomonospora are usually Gram-positive, non-acid fast, and are classified among the actinomycetes. S. cyanea is characterized by a dark blue (= cyan blue) aerial mycelium. After S. viridis, S. azurea, and S. marina, S. cyanea is only the fourth member in the genus for which a completely sequenced (non-contiguous finished draft status) type strain genome will be published. Here we describe the features of this organism, together with the draft genome sequence, and annotation. The 5,408,301 bp long chromosome with its 5,139 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

Meier-Kolthoff, Jan P. [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany] [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Lu, Megan [Los Alamos National Laboratory (LANL)] [Los Alamos National Laboratory (LANL); Huntemann, Marcel [U.S. Department of Energy, Joint Genome Institute] [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute] [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute] [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute] [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute] [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL)] [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL)] [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL)] [Los Alamos National Laboratory (LANL); Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany] [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL] [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute] [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany] [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany] [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute] [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute] [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute] [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany] [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

2013-01-01T23:59:59.000Z

445

Complete genome sequence of Rhodospirillum rubrum type strain (S1T)  

SciTech Connect (OSTI)

Rhodospirillum rubrum (Esmarch 1887) Molisch 1907 is the type species of the genus Rho- dospirillum, which is the type genus of the family Rhodospirillaceae in the class Alphaproteo- bacteria. The species is of special interest because it is an anoxygenic phototroph that pro- duces extracellular elemental sulfur (instead of oxygen) while harvesting light. It contains one of the most simple photosynthetic systems currently known, lacking light harvesting complex 2. Strain S1T can grow on carbon monoxide as sole energy source. With currently over 1,750 PubMed entries, R. rubrum is one of the most intensively studied microbial species, in partic- ular for physiological and genetic studies. Next to R. centenum strain SW, the genome se- quence of strain S1T is only the second genome of a member of the genus Rhodospirillum to be published, but the first type strain genome from the genus. The 4,352,825 bp long chro- mosome and 53,732 bp plasmid with a total of 3,850 protein-coding and 83 RNA genes were sequenced as part of the DOE Joint Genome Institute Program DOEM 2002.

Munk, Christine [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Barry, Kerrie [U.S. Department of Energy, Joint Genome Institute; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Israni, Sanjay [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Brettin, Thomas S [ORNL; Bruce, David [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Gilna, Paul [University of California, La Jolla; Schmutz, Jeremy [Stanford University; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Mavromatis, K [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Zhang, Yaoping [University of Wisconsin, Madison; Roberts, Gary P. [University of Wisconsin, Madison; Reslewic, Susan [University of Wisconsin, Madison; Schwartz, David C. [University of Wisconsin, Madison

2011-01-01T23:59:59.000Z

446

Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)  

SciTech Connect (OSTI)

Saccharomonospora marina Liu et al. 2010 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive staining, non-acid fast, and classify among the actinomycetes. Next to S. viridis and S. azurea, S. marina is the third member in the genus Saccharomonospora for with a completely sequenced (permanent draft status) type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Lu, Megan [Los Alamos National Laboratory (LANL); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Brambilla, Evelyne-Marie [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Li, Wen-Jun [Yunnan University, Kunming, China; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

447

Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T)  

SciTech Connect (OSTI)

Saccharomonospora azurea Runmao et al. 1987 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonosoras are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist and over-heated grain, where they might play a role in the primary degradation of plant material by attacking hemicellulose. They are Gram-negative staining organisms classified among the usually Gram-positive actinomycetes. Next to S. viridis, S. azurea is only the second member in the genus Saccharomonospora for with a completely sequenced type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence with project status 'permanent draft', and annotation. The 4,763,832 bp long chromosome with its 4,472 protein-coding and 58 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Held, Brittany [Los Alamos National Laboratory (LANL); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Brambilla, Evelyne-Marie [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

448

Automatic annotation of organellar genomes with DOGMA  

SciTech Connect (OSTI)

Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of extra-nuclear organellar (chloroplast and animal mitochondrial) genomes. It is a web-based package that allows the use of comparative BLAST searches to identify and annotate genes in a genome. DOGMA presents a list of putative genes to the user in a graphical format for viewing and editing. Annotations are stored on our password-protected server. Complete annotations can be extracted for direct submission to GenBank. Furthermore, intergenic regions of specified length can be extracted, as well the nucleotide sequences and amino acid sequences of the genes.

Wyman, Stacia; Jansen, Robert K.; Boore, Jeffrey L.

2004-06-01T23:59:59.000Z

449

The Okanagan Institute for Biodiversity, Resilience, and  

E-Print Network [OSTI]

2013-2014 The Okanagan Institute for Biodiversity, Resilience, and Ecosystem Services (formerly name ­ The Okanagan Institute for Biodiversity, Resilience, and Ecosystem Services (BRAES) ­ to better

Pulfrey, David L.

450

Federal Correctional Institution - Phoenix, Arizona | Department...  

Energy Savers [EERE]

Federal Correctional Institution - Phoenix, Arizona Photo of a Parabolic-Trough Solar Water-Heating System Installed at the Federal Correctional Institution Facility north of...

451

Workplace Charging Challenge Partner: SAS Institute | Department...  

Energy Savers [EERE]

Partner: SAS Institute SAS Institute assigns top priority to minimizing energy consumption and related emissions from its operations. The SAS Eco-Commuter Parking Program...

452

ORISE: Oak Ridge Sitewide Institutional Review Board  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Oak Ridge Sitewide Institutional Review Board The Federal Policy for the Protection of Human Subjects, also known as the Common Rule, requires that each institution that engages in...

453

Climate Change Science Institute | Clean Energy | ORNL  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Climate Change Science Institute SHARE Climate Change Science Institute To advance understanding of the Earth system, describe the consequences of climate change, and evaluate and...

454

Sandia National Laboratories: Japanese National Institute of...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Japanese National Institute of Advanced Industrial Science and Technology Sandia-California Partners with Japanese National Institute of Advanced Industrial Science and Technology...

455

Minority Educational Institution Student Partnership Program...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

Minority Educational Institution Student Partnership Program (MEISPP) Minority Educational Institution Student Partnership Program (MEISPP) December 14, 2012 8:00PM EST to March...

456

Nuclear Energy Institute (NEI) Attachment, Integrated Safety...  

Broader source: Energy.gov (indexed) [DOE]

Energy Institute (NEI) Attachment, Integrated Safety Analysis Nuclear Energy Institute (NEI) Attachment, Integrated Safety Analysis This paper addresses why the use of an...

457

Measure and Evaluate Institutional Change for Sustainability...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

Measure and Evaluate Institutional Change for Sustainability Measure and Evaluate Institutional Change for Sustainability Graphic showing 5 gears. They progress from Determine Goal...

458

Institutional Change Process for Sustainability | Department...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

Process for Sustainability Institutional Change Process for Sustainability For establishing institutional change in a Federal agency to achieve sustainability or other energy...

459

Institutional Change Basics for Sustainability | Department of...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

Basics for Sustainability Institutional Change Basics for Sustainability Institutional change integrates technology, policy, and behavior to make new sustainability practices and...

460

Initial sequencing and analysis of the human genome  

E-Print Network [OSTI]

Initial sequencing and analysis of the human genome International Human Genome Sequencing. ............................................................................................................................................................................................................................................................................ The human genome holds an extraordinary trove of information about human development, physiology, medicine a draft sequence of the human genome. We also present an initial analysis of the data, describing some

Eddy, Sean

Note: This page contains sample records for the topic "genome institute walnut" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


461

Comparing Bacterial Genomes by Searching their Common Intervals  

E-Print Network [OSTI]

Comparing Bacterial Genomes by Searching their Common Intervals S´ebastien Angibaud, Damien. Comparing bacterial genomes implies the use of a dedicated measure. It relies on comparing circular genomes genomes that takes into account duplications. Its application on a concrete case, comparing E. coli and V

Fertin, Guillaume

462

Genome Organization and Gene Expression Shape the Transposable Element Distribution  

E-Print Network [OSTI]

Genome Organization and Gene Expression Shape the Transposable Element Distribution The distribution of transposable elements (TEs) in a genome reflects a balance between insertion rate and selection shaping the organization of genomes. Past research has shown that TEs tend to accumulate in genomic

Alvarez, Nadir

463

Assembly and Analysis of Extended Human Genomic Contig Regions  

E-Print Network [OSTI]

@ibc.wustl.edu; states@ibc.wustl.edu Abstract The Human Genome Project (HGP) has led to the deposit of human genomic The U.S. Human Genome Project, coordinated by the United States Department of Energy (DOEAssembly and Analysis of Extended Human Genomic Contig Regions Eric C. Rouchka and David J. States

Rouchka, Eric

464

Genomic Signal Processing: From Matrix Algebra to Genetic Networks  

E-Print Network [OSTI]

-Scale Molecular Biological Data The Human Genome Project, and the resulting sequencing of complete genomes, fueled (GSVD); pseudoinverse projection; blind source separation (BSS) algorithms; genome-scale RNA expression now be measured on genomic scales (e.g., refs. 3 and 4). For the first time in human history

Utah, University of

465

Discovery of functional elements in 12 Drosophila genomes using evolutionary  

E-Print Network [OSTI]

Genome Project{, Emily Hodges12 , Angie S. Hinrichs4 , Anat Caspi13 , Benedict Paten4,5,14 , Seung for comparative studies. The sequencing of the human genome and the genomes of dozens of other metazoan speciesARTICLES ; genomes using evolutionary

Kellis, Manolis

466

The Mastermind Attack on Genomic Data Michael T. Goodrich  

E-Print Network [OSTI]

]. Moreover, a project to fully sequence 1,000 human genomes in the next few years is already under way [24 diploid human genomes will be economically affordable. The milestone of the first human genome sequence draft in 2001 [12], [39] has recently been followed by the first diploid human genome sequence [26

Goodrich, Michael T.

467

Update on human genome completion and annotations: Protein information  

E-Print Network [OSTI]

Update on human genome completion and annotations: Protein information resource Cathy Wu1 The high-throughput genome projects have resulted in a rapid accumulation of genome sequences for a large-PSD, SwissProt and TrEMBL) proteins--organised into more than 36,290 PIR superfamilies, Human Genomics 95760

468

Phylogenetics of modern birds in the era of genomics  

Science Journals Connector (OSTI)

...Phylogenetics of modern birds in the era of genomics Scott V Edwards * W Bryan Jennings Andrew...witnessed the advent and maturation of the genomics era, the completion of the chicken genome...for birds. A variety of comparative genomics strategies, including adoption of objective...

2005-01-01T23:59:59.000Z

469

APPLIED GENOMICS TECHNOLOGY CENTER www.agtc.med.wayne.edu  

E-Print Network [OSTI]

APPLIED GENOMICS TECHNOLOGY CENTER www.agtc.med.wayne.edu CURRENT SERVICES CONTACT INFORMATION Dr. Susan J. Land, Ph.D. Laboratory Director ABOUT THE FACILITY The Applied Genomics Technology Center (AGTC-of-the-art, fee-for-service genomics center that provides a wide range of genomic technologies to the medical

Berdichevsky, Victor

470

Target selection and current status of structural genomics for the  

E-Print Network [OSTI]

33 Target selection and current status of structural genomics for the completed microbial genomes 3.2 Structural status of completed microbial genomes in the PDB................ 3.3 Metabolic pathways as targets for structural genomics.......................... 3.3.1 Glycolytic pathway

Babu, M. Madan

471

Phylogenetics of modern birds in the era of genomics  

E-Print Network [OSTI]

Review Phylogenetics of modern birds in the era of genomics Scott V. Edwards*, W. Bryan Jennings and maturation of the genomics era, the completion of the chicken genome and a suite of technologies that promise genomics strategies, including adoption of objective quality scores for sequence data, analysis

Edwards, Scott

472

Functional Genomics: It's All How You Read It  

E-Print Network [OSTI]

Functional Genomics: It's All How You Read It Philip Hieter and Mark Boguski "Functional genomics to functional genomics? An informal poll of colleagues indicates that the term is widely used, but has many genomics websites that have sprung up over the last 12 months clearly demonstrates that interpretations

Boguski, Mark S.

473

14128_JGI_CR_07:2007 JGI Progress Report  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

JOINT JOINT GENOME INSTITUTE PROGRESS REPORT 2007 U.S. DEPARTMENT OF ENERGY On the cover: The eucalyptus tree was selected in 2007 for se- quencing by the JGI. The microbial community in the termite hindgut of Nasutitermes corniger was the subject of a study published in the November 22, 2007 edition of the journal, Nature. JGI Mission The U.S. Department of Energy Joint Genome Institute, supported by the DOE Office of Science, unites the expertise of five national laboratories-Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest - along with the Stanford Human Genome Center to advance genomics in support of the DOE mis- sions related to clean energy generation and environmental char- acterization and cleanup. JGI's Walnut Creek, CA, Production

474

Mapping the Human Reference Genome's Missing Sequence by Three-Way Admixture in Latino Genomes  

E-Print Network [OSTI]

ARTICLE Mapping the Human Reference Genome's Missing Sequence by Three-Way Admixture in Latino Genomes Giulio Genovese,1,2,3,* Robert E. Handsaker,2,3 Heng Li,2,3 Eimear E. Kenny,4,5,6,7,8 and Steven A. McCarroll1,2,3,* A principal obstacle to completing maps and analyses of the human genome involves

McCarroll, Steve

475

Complete genome sequence of Tolumonas auensis type strain (TA 4T)  

SciTech Connect (OSTI)

Tolumonas auensis Fischer-Romero et al. 1996 is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Oth- er than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4T is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292 bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008.

Chertkov, Olga [Los Alamos National Laboratory (LANL); Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Berry, Alison M [California Institute of Technology, University of California, Davis; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Spring, Stefan [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Beller, Harry R. [Lawrence Berkeley National Laboratory (LBNL); Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

476

Complete genome sequence of Tolumonas auensis type strain (TA 4T)  

SciTech Connect (OSTI)

Tolumonas auensis (Fischer-Romero et al. 1996) is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Other than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4T is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292-bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008.

Chertkov, Olga; Copeland, Alex; Lucas1, Susa; Lapidus, Alla; Berry, KerrieW.; Detter, JohnC.; Glavina Del Rio, Tijana; Hammon, Nancy; Dalin, Eileen; Tice, Hope; Pitluck, Sam; Richardson, Paul; Bruce, David; Goodwin, Lynne; Han, Cliff; Tapia, Roxanne; Saunders, Elizabeth; Schmutz, Jeremy; Brettin, Thomas; Larimer, Frank; Land, Miriam; Hauser, Loren; Spring, Stefan; Rohde, Manfred; Kyrpides, NikosC.; Ivanova, Natalia; Göker, Markus; Beller, HarryR.; Klenk, Hans-Peter; Woyke, Tanja

2011-10-04T23:59:59.000Z

477

Application of comparative genomics for detection of genomic features and transcriptional regulatory elements.  

E-Print Network [OSTI]

??In the wake of advanced DNA sequencing technology, a large number of bacterial, animal, and plant genomes have now been completely sequenced and deposited into… (more)

Lu, Hong

2011-01-01T23:59:59.000Z

478

Genomics and Clinical MedicineTranslational Research in Genetics and Genomics  

Science Journals Connector (OSTI)

...important identity to a new scientific discipline — genomics — when he and Frank Ruddle launched a new journal by that name 3 years before the 1990 launch of the Human Genome Project. When McKusick asked me to succeed him as the editor-in-chief of Genomics in 2003, the year in which the "finished" human... The death in July 2008 of Victor A. McKusick marked the end of an era. McKusick, widely considered to be the founding father of medical genetics, gave both a name and an important identity to a new scientific discipline — genomics — when he and Frank ...

Boguski M.S.

2008-10-30T23:59:59.000Z

479

Genome Engineering with TAL Effector Nucleases  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Genome Engineering with TAL Effector Nucleases Print Genome Engineering with TAL Effector Nucleases Print Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such as the correction of gene sequences in patients suffering from genetic diseases, the modification or insertion of genes in plants, and the generation of unique cell lines for treatment of diseases such as cancer. GE requires the development of molecular tools that can search out and bind to one unique site within a complex genome while avoiding 'off-target' interactions across the remaining billions of DNA bases present in a cell's nucleus. Using ALS Beamline 5.0.2, researchers have solved the structure of one such tool called a TAL protein, learning its mechanism of action for DNA recognition and binding.

480

Genome Engineering with TAL Effector Nucleases  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Genome Engineering with TAL Effector Nucleases Print Genome Engineering with TAL Effector Nucleases Print Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such as the correction of gene sequences in patients suffering from genetic diseases, the modification or insertion of genes in plants, and the generation of unique cell lines for treatment of diseases such as cancer. GE requires the development of molecular tools that can search out and bind to one unique site within a complex genome while avoiding 'off-target' interactions across the remaining billions of DNA bases present in a cell's nucleus. Using ALS Beamline 5.0.2, researchers have solved the structure of one such tool called a TAL protein, learning its mechanism of action for DNA recognition and binding.

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481

Computational comparative genomics : genes, regulation, evolution  

E-Print Network [OSTI]

Understanding the biological signals encoded in a genome is a key challenge of computational biology. These signals are encoded in the four-nucleotide alphabet of DNA and are responsible for all molecular processes in the ...

Kamvysselis, Manolis, 1977-

2003-01-01T23:59:59.000Z

482

Genomics of wood-degrading fungi  

Science Journals Connector (OSTI)

Abstract Woody plants convert the energy of the sun into lignocellulosic biomass, which is an abundant substrate for bioenergy production. Fungi, especially wood decayers from the class Agaricomycetes, have evolved ways to degrade lignocellulose into its monomeric constituents, and understanding this process may facilitate the development of biofuels. Over the past decade genomics has become a powerful tool to study the Agaricomycetes. In 2004 the first sequenced genome of the white rot fungus Phanerochaete chrysosporium revealed a rich catalog of lignocellulolytic enzymes. In the decade that followed the number of genomes of Agaricomycetes grew to more than 75 and revealed a diversity of wood-decaying strategies. New technologies for high-throughput functional genomics are now needed to further study these organisms.

Robin A. Ohm; Robert Riley; Asaf Salamov; Byoungnam Min; In-Geol Choi; Igor V. Grigoriev

2014-01-01T23:59:59.000Z

483

Comparative genomics and bioenergetics Jose Castresana *  

E-Print Network [OSTI]

Review Comparative genomics and bioenergetics Jose Castresana * European Molecular Biology conclusions about the phylogenetic distribution and evolution of bioenergetic pathways to be drawn conservation used by prokaryotes. In addition, a thorough phylogenetic analysis of other bioenergetic protein

Castresana, Jose

484

Genomic aggregation effects and Simpson's paradox  

E-Print Network [OSTI]

Genomic studies have become commonplace, with thousands of gene expressions typically collected on single or multiple platforms and analyzed. Unaccounted time-ordered or epigenetic aspects of genetic expression may lead ...

Brimacombe, Michael

2014-01-08T23:59:59.000Z

485

Justice and the Human Genome Project  

SciTech Connect (OSTI)

Most of the essays gathered in this volume were first presented at a conference, Justice and the Human Genome, in Chicago in early November, 1991. The goal of the, conference was to consider questions of justice as they are and will be raised by the Human Genome Project. To achieve its goal of identifying and elucidating the challenges of justice inherent in genomic research and its social applications the conference drew together in one forum members from academia, medicine, and industry with interests divergent as rate-setting for insurance, the care of newborns, and the history of ethics. The essays in this volume address a number of theoretical and practical concerns relative to the meaning of genomic research.

Murphy, T.F.; Lappe, M. [eds.] [eds.

1992-12-31T23:59:59.000Z

486

Justice and the Human Genome Project  

SciTech Connect (OSTI)

Most of the essays gathered in this volume were first presented at a conference, Justice and the Human Genome, in Chicago in early November, 1991. The goal of the, conference was to consider questions of justice as they are and will be raised by the Human Genome Project. To achieve its goal of identifying and elucidating the challenges of justice inherent in genomic research and its social applications the conference drew together in one forum members from academia, medicine, and industry with interests divergent as rate-setting for insurance, the care of newborns, and the history of ethics. The essays in this volume address a number of theoretical and practical concerns relative to the meaning of genomic research.

Murphy, T.F.; Lappe, M. (eds.)

1992-01-01T23:59:59.000Z

487

Integrated genomic analyses of ovarian carcinoma  

E-Print Network [OSTI]

A catalogue of molecular aberrations that cause ovarian cancer is critical for developing and deploying therapies that will improve patients’ lives. The Cancer Genome Atlas project has analysed messenger RNA expression, ...

Lander, Eric S.

488

Integrated genomic characterization of endometrial carcinoma  

E-Print Network [OSTI]

We performed an integrated genomic, transcriptomic and proteomic characterization of 373 endometrial carcinomas using array- and sequencing-based technologies. Uterine serous tumours and ~25% of high-grade endometrioid ...

Lander, Eric S.

489

Next-generation information systems for genomics   

E-Print Network [OSTI]

The advent of next-generation sequencing technologies is transforming biology by enabling individual researchers to sequence the genomes of individual organisms or cells on a massive scale. In order to realize the ...

Mungall, Christopher

2011-06-27T23:59:59.000Z

490

First international E. coli genome meeting  

SciTech Connect (OSTI)

This volume is a collection of abstracts of oral presentations and poster sessions of studies reported at the First International E. Coli Genome Meeting, held September 10-14, 1992 at the University of Wisconsin.

Not Available

1992-01-01T23:59:59.000Z

491

Webinar December 2: Materials Genome Initiative  

Broader source: Energy.gov [DOE]

The Energy Department will present a live webinar entitled "Materials Genome Initiative" on Tuesday, December 2, from 12:00 to 1:00 p.m. Eastern Standard Time.

492

Chapter One - Fungal Genomics: Sequencing and Annotation  

Science Journals Connector (OSTI)

Abstract Plants grow in close associations with fungi—pathogens, symbionts, and endophytes—and depend on these associations for success. Therefore, understanding the mechanisms of these interactions is important in order to create optimal conditions for plant growth. Genomics is a powerful tool not only to discover the potential encoded in genomes of both plants and plant-associated fungi but also to monitor dynamics of their interactions through gene expression and other genome-enabled analyses. Next-generation sequencing technologies offer tools to explore nature's wide array of plant–fungal interactions in unprecedented depth, and the sheer volume of data produced is enormous. Several approaches to assemble, annotate, and analyse this wealth of genomics data are discussed in this chapter.

Alan Kuo; Brian Bushnell; Igor V. Grigoriev

2014-01-01T23:59:59.000Z

493

PGAP: pan-genomes analysis pipeline  

Science Journals Connector (OSTI)

......called pan-genomes analysis pipeline (PGAP), which has integrated...Stanhope, 2007). In PGAP pipeline, 1366 core clusters have been...replication, recombination and repair, cell wall/membrane/envelope...replication, recombination and repair and cell wall/membrane......

Yongbing Zhao; Jiayan Wu; Junhui Yang; Shixiang Sun; Jingfa Xiao; Jun Yu

2012-02-01T23:59:59.000Z

494

Genome Engineering with TAL Effector Nucleases  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Genome Engineering with TAL Effector Nucleases Print Genome Engineering with TAL Effector Nucleases Print Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such as the correction of gene sequences in patients suffering from genetic diseases, the modification or insertion of genes in plants, and the generation of unique cell lines for treatment of diseases such as cancer. GE requires the development of molecular tools that can search out and bind to one unique site within a complex genome while avoiding 'off-target' interactions across the remaining billions of DNA bases present in a cell's nucleus. Using ALS Beamline 5.0.2, researchers have solved the structure of one such tool called a TAL protein, learning its mechanism of action for DNA recognition and binding.

495

DOE Joint Genome Institute: Getting to the Root-Unearthing the  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

August 1, 2012 August 1, 2012 Getting to the Root- Unearthing the Plant-Microbe Quid Pro Quo While the flower may attract the bee and the admiring eye of the passerby, it is the unseen complex network of life below ground where the action is. The microbial community or microbiome that inhabits the rhizosphere and endosphere -the niches immediately surrounding and inside a plant's root-facilitates the shuttling of nutrients and information into and out of the roots within the soil matrix. This commerce, by enabling the plant to adapt to its immediate environment, contributes to plant health and growth, defense against pests, management of carbon and other elements for the enrichment of the soil, and even informs the plant's ability to sequester contaminants. These underground microbial activities have not

496

First Annual U.S. Department of Energy Office of Science Joint Genome Institute User Meeting  

E-Print Network [OSTI]

involved in mild food poisoning, causing rather noxious,isolated from a severe food poisoning case in France (Lunda severe diarrheic food poisoning. It synthesizes at least

Various

2006-01-01T23:59:59.000Z

497

DOE Joint Genome Institute: Waves of Berkeley Lab Responders Deploy Omics  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

1, 2012 1, 2012 Waves of Berkeley Lab Responders Deploy Omics to Track Deepwater Horizon Oil Spill Cleanup Microbes In the aftermath of the Deepwater Horizon oil spill in the Gulf of Mexico two years ago, various strategies were deployed to prevent 4.9 million barrels of light crude oil from fouling the waters and reaching the shores. A team of Lawrence Berkeley National Laboratory (Berkeley Lab) researchers found that nature also played a role in the dispersal process as marine microbial communities responded to the oil plume that made its way from the wellhead at a depth of 5,000 feet to the surface of the water. "There was oil on the surface and oil below, but no oil in between," said microbial ecologist Terry Hazen, former head of the Ecology Department

498

The Plant Genome [A Supplement to Crop Science] March 2008 No. 1 S-27 Genomic Origins of Potato  

E-Print Network [OSTI]

The Plant Genome [A Supplement to Crop Science] March 2008 No. 1 S-27 Genomic Origins of Potato., and Shelley H. Jansky Abstract Chromosome pairing relationships within cultivated potato (Solanum tuberosum we reexamine potato genome hypotheses with the first phylogenetic analysis of all major genomes

Spooner, David

499

1st Genomics-Bioinformatics Day on "Comparative Genomics" April 24th 2003 in the Medawar Building in the  

E-Print Network [OSTI]

1st Genomics-Bioinformatics Day on "Comparative Genomics" April 24th 2003 in the Medawar Building. There is a need, however, for researchers interested in genomics and bioinformatics to meet, so Jotun Hein, Richard Mott and Chris Ponting have organised the first Genomics/Bioinformatics day. It is our intention

Goldschmidt, Christina

500

Genomic analysis of the horse Y chromosome  

E-Print Network [OSTI]

OF PHILOSOPHY December 2004 Major Subject: Genetics GENOMIC ANALYSIS OF THE HORSE Y CHROMOSOME A Dissertation by AVNI BHAWAN SANTANI Submitted to Texas A&M University in partial fulfillment of the requirements for the degree... of Department) December 2004 Major Subject: Genetics iii ABSTRACT Genomic Analysis of the Horse Y Chromosome. (December 2004) Avni Bhawan Santani, B.S., University of Mumbai; M.S., University of Aberdeen Chair of Advisory Committee: Dr. Bhanu P...

Santani, Avni Bhawan

2005-02-17T23:59:59.000Z