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Sample records for genome institute climate

  1. The US Department of Energy Joint Genome Institute Microbial Genome Program

    E-Print Network [OSTI]

    Lapidus, Alla

    2005-01-01

    Department of Energy Joint Genome Institute Microbial GenomeDepartment of Energy Joint Genome Institute Microbial Genome

  2. Joint Genome Institute's Automation Approach and History

    E-Print Network [OSTI]

    Roberts, Simon

    2006-01-01

    Joint Genome Institute’s Automation Approach and Historythroughput environment; – automation does not necessarilyissues “Islands of Automation” – modular instruments with

  3. Institute for Plant Genomics and Biotechnology GENOMICS AND BIOTECHNOLOGY

    E-Print Network [OSTI]

    Institute for Plant Genomics and Biotechnology GENOMICS AND BIOTECHNOLOGY A multidisciplinary organization, the Institute for Plant Genomics and Biotechnology is a composed of faculty members representing projects at the Institute for Plant Genomics and Biotechnology include the development of transgenic plants

  4. Climate Change Science Institute | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Climate Change Science Institute SHARE Climate Change Science Institute To advance understanding of the Earth system, describe the consequences of climate change, and evaluate and...

  5. Genomics of Climate Resilience (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Bermingham, Eldredge [STRI-Panama

    2013-03-27

    Eldredge Bermingham of the Smithsonian Tropical Research Institute-Panama on "Genomics of climate resilience" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  6. Microbial Genomics Data from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    As of March 2008, The Joint Genome Institute has released 296 Prokaryotic microbial sites, with 216 in finished status.

  7. Yangzhong Tang Functional Genomics Platform@ Whitehead Institute

    E-Print Network [OSTI]

    Sabatini, David M.

    Yangzhong Tang Functional Genomics Platform@ Whitehead Institute June 1st, 2015 Entering the CRISPR-Cas9 Era #12;Outline · The Human Genome o Basics and timeline o Exponential increase in genomic data o How to use the big data for biological discoveries · Functional Genomics · CRISPR-Cas systems o

  8. Joint Genome Institute's Automation Approach and History

    SciTech Connect (OSTI)

    Roberts, Simon

    2006-07-05

    Department of Energy/Joint Genome Institute (DOE/JGI) collaborates with DOE national laboratories and community users, to advance genome science in support of the DOE missions of clean bio-energy, carbon cycling, and bioremediation.

  9. Planning the Genome Institute's Future

    E-Print Network [OSTI]

    Botstein, David

    floors of a house, resting on a foundation of the Human Genome Project, with "Genomics to Society" on top planning that society will realize the scientific and public health benefits of the Human Genome Project. It has been a genome community tradi- tion since before there was a Human Genome Project, and NHGRI

  10. Illumina Production Sequencing at DOE Joint Genome Institute

    E-Print Network [OSTI]

    Tarver, Angela

    2014-01-01

    Production Sequencing at DOE Joint Genome Institute Angelathe US Department of Energy (DOE) Joint Genome Institute isthe Office of Science of the DOE under Contract Number DE-

  11. is a Bioinformatics Scientist at the Institute for Genomic

    E-Print Network [OSTI]

    Salzberg, Steven

    Mihai Pop is a Bioinformatics Scientist at the Institute for Genomic Research. He earned his PhD in Computer Science from Johns Hopkins University in 2000. His research interests include genome assembly and comparative genomics. Adam Phillippy is a Bioinformatics Software Engineer at The Institute for Genomic

  12. INSTITUTE OF FUNCTIONAL GENOMICS Montpellier, Biomedical Campus Arnaud de Villeneuve

    E-Print Network [OSTI]

    van Tiggelen, Bart

    INSTITUTE OF FUNCTIONAL GENOMICS Montpellier, Biomedical Campus Arnaud de Villeneuve Seeking new group leaders The Institute of Functional Genomics (IGF) (www.igf.cnrs.fr), located in Montpellier of a wide range of state of the art facilities, including Genomics, Proteomics, medium throughput screening

  13. DOE Joint Genome Institute 2008 Progress Report

    E-Print Network [OSTI]

    Gilbert, David

    2009-01-01

    completion of the Human Genome Project, sequencing and itsimagined when the Human Genome Project first began. Accord-genes. Instead, the Human Genome Project found that hu- mans

  14. Rooted in Wonder: Joint Genome Institute Study Reveals Amazing...

    Broader source: Energy.gov (indexed) [DOE]

    underfoot essentials so easily overlooked. Recently, a team of researchers led by the Energy Department Office of Science's Joint Genome Institute (JGI) and the University of...

  15. Joint Genome Institute Progress Report 2002-2005

    SciTech Connect (OSTI)

    Gilbert, David

    2005-10-03

    Progress report covering activities at the DOE-Joint Genome Institute in Walnut Creek, California for the period 2002-2005.

  16. DOE Joint Genome Institute 2008 Progress Report

    SciTech Connect (OSTI)

    Gilbert, David

    2009-03-12

    While initially a virtual institute, the driving force behind the creation of the DOE Joint Genome Institute in Walnut Creek, California in the Fall of 1999 was the Department of Energy's commitment to sequencing the human genome. With the publication in 2004 of a trio of manuscripts describing the finished 'DOE Human Chromosomes', the Institute successfully completed its human genome mission. In the time between the creation of the Department of Energy Joint Genome Institute (DOE JGI) and completion of the Human Genome Project, sequencing and its role in biology spread to fields extending far beyond what could be imagined when the Human Genome Project first began. Accordingly, the targets of the DOE JGI's sequencing activities changed, moving from a single human genome to the genomes of large numbers of microbes, plants, and other organisms, and the community of users of DOE JGI data similarly expanded and diversified. Transitioning into operating as a user facility, the DOE JGI modeled itself after other DOE user facilities, such as synchrotron light sources and supercomputer facilities, empowering the science of large numbers of investigators working in areas of relevance to energy and the environment. The JGI's approach to being a user facility is based on the concept that by focusing state-of-the-art sequencing and analysis capabilities on the best peer-reviewed ideas drawn from a broad community of scientists, the DOE JGI will effectively encourage creative approaches to DOE mission areas and produce important science. This clearly has occurred, only partially reflected in the fact that the DOE JGI has played a major role in more than 45 papers published in just the past three years alone in Nature and Science. The involvement of a large and engaged community of users working on important problems has helped maximize the impact of JGI science. A seismic technological change is presently underway at the JGI. The Sanger capillary-based sequencing process that dominated how sequencing was done in the last decade is being replaced by a variety of new processes and sequencing instruments. The JGI, with an increasing number of next-generation sequencers, whose throughput is 100- to 1,000-fold greater than the Sanger capillary-based sequencers, is increasingly focused in new directions on projects of scale and complexity not previously attempted. These new directions for the JGI come, in part, from the 2008 National Research Council report on the goals of the National Plant Genome Initiative as well as the 2007 National Research Council report on the New Science of Metagenomics. Both reports outline a crucial need for systematic large-scale surveys of the plant and microbial components of the biosphere as well as an increasing need for large-scale analysis capabilities to meet the challenge of converting sequence data into knowledge. The JGI is extensively discussed in both reports as vital to progress in these fields of major national interest. JGI's future plan for plants and microbes includes a systematic approach for investigation of these organisms at a scale requiring the special capabilities of the JGI to generate, manage, and analyze the datasets. JGI will generate and provide not only community access to these plant and microbial datasets, but also the tools for analyzing them. These activities will produce essential knowledge that will be needed if we are to be able to respond to the world's energy and environmental challenges. As the JGI Plant and Microbial programs advance, the JGI as a user facility is also evolving. The Institute has been highly successful in bending its technical and analytical skills to help users solve large complex problems of major importance, and that effort will continue unabated. The JGI will increasingly move from a central focus on 'one-off' user projects coming from small user communities to much larger scale projects driven by systematic and problem-focused approaches to selection of sequencing targets. Entire communities of scientists working in a particular field, such as feeds

  17. Eukaryotic Genomics Data from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    From the JGI webportal users can choose Eukaryotic genomes from a photo list, access the JGI FTP directories to download data files, use the Tree of Life navigation tool, or choose a genome and go directly to a website specific to that one genome. The individual sites include direct access to download sequence files, BLAST, search, view and navigate the genomic annotations.

  18. Genome Rearrangement and Planning Institute of Information Systems

    E-Print Network [OSTI]

    Erdem, Esra

    Genome Rearrangement and Planning Esra Erdem Institute of Information Systems Vienna University Avenue, Toronto, Canada e.tillier@utoronto.ca Abstract The genome rearrangement problem is to find the most eco­ nomical explanation for observed differences between the gene orders of two genomes

  19. Climate and Institutional Change ADVANCE efforts to improve

    E-Print Network [OSTI]

    Sheridan, Jennifer

    #12;Climate and Institutional Change ADVANCE efforts to improve departmental climate #12;Why Climate? Recruitment--women more likely to come to a department with good climate Retention--women faculty more likely to stay in a department with good climate Advancement--women more likely to be promoted

  20. DOE Joint Genome Institute 2008 Progress Report

    E-Print Network [OSTI]

    Gilbert, David

    2009-01-01

    proteins for biofuel production. Trends in Mi- crobiology,could help improve biofuel production. Diatom Genome Helpsa key target. Current biofuel production meth- ods, such as

  1. Genomics at the Ontario Institute for Cancer Research

    SciTech Connect (OSTI)

    Ali, Johar

    2010-06-02

    Johar Ali of the Ontario Institute for Cancer Research discusses genomics and next-gen applications at the OICR on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM

  2. 2013 Progress Report -- DOE Joint Genome Institute None 59 BASIC...

    Office of Scientific and Technical Information (OSTI)

    bit.lyJGI-Vision for the Institute. A central focus of this Strategic Vision is to bridge the gap between sequenced genomes and an understanding of biological functions at the...

  3. Climate Change Science Institute at Oak Ridge National Laboratory

    E-Print Network [OSTI]

    Climate Change Science Institute at Oak Ridge National Laboratory A multidisciplinary research the consequences of climate change, and evaluate and inform policy responses to climate change Highlights of CCSI research include · Participation in the Intergovernmental Panel on Climate Change Fifth Assessment Report

  4. Integrated Microbial Genomes (IMG) System from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and annotating genomes, genes and functions, individually or in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through quarterly releases. IMG is provided by the DOE-Joint Genome Institute (JGI) and is available from http://img.jgi.doe.gov. [Abstract from The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions; Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Natalia N. Ivanova and Nikos C. Kyrpides; Nucleic Acids Research, 2008, Vol. 36. (Database Issue) See also the companion system, Integrated Microbial Genomes with Microbiome Samples.

  5. Climate Change Institute director wants to increase information...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Fred Strohl Communications 865.574.4165 Climate Change Science Institute director wants to increase information Jack Fellows Jack Fellows (hi-res image) Listen to the audio OAK...

  6. Massachusetts Institute of Technology A Personal Supercomputer for Climate Research

    E-Print Network [OSTI]

    CSAIL Massachusetts Institute of Technology A Personal Supercomputer for Climate Research James C and Artificial Intelligence Laboratory #12;#12;A Personal Supercomputer for Climate Research Computation of Technology Cambridge, MA 02139 jhoe@lcs.mit.edu Chris Hill, Alistair Adcroft Dept. of Earth, Atmospheric

  7. ANNUAL REPORT Pacific Institute for Climate Solutions

    E-Print Network [OSTI]

    Pedersen, Tom

    for Climate Solutions gratefully acknowledges the generous endowment provided by the Province of British Columbia through the Ministry of Environment in 2008.This funding is enabling ongoing independent research achieving a vibrant low carbon economy. Mission To partner with governments, the private sector, other

  8. Keith L. Kline Climate Change Science Institute,

    E-Print Network [OSTI]

    Post, Wilfred M.

    Efficiency and Renewable Energy Alternative Financing; ORNL Federal Energy Management Program Team), Central American Research Institute for Industry and Technology (renewables and energy efficiency of resource potential and indirect effects for the International Energy Agency Bioenergy Task 38

  9. The Genome Portal of the Department of Energy Joint Genome Institute

    E-Print Network [OSTI]

    Grigoriev, Igor V.

    2014-01-01

    The Genome Portal of the Department of Energy Joint Genome 10.1093/nar/gkr947 The Genome Portal of the Department ofthe web. The JGI Genome Portal (http://genome.jgi.doe.gov)

  10. FACILITIES and EQUIPMENT DESCRIPTION The UCR Institute for Integrative Genome Biology

    E-Print Network [OSTI]

    Lyubomirsky, Ilya

    1 FACILITIES and EQUIPMENT DESCRIPTION The UCR Institute for Integrative Genome Biology interdisciplinary, four-story Genomics Building in 2009 to accommodate over 200 faculty members, graduate students one roof who use modern genetic tools, genomics and bioinformatics to help address basic and applied

  11. The Challenges and Opportunities for Extending Plant Genomics to Climate (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Weston, David [ORNL

    2013-03-01

    David Weston of Oak Ridge National Laboratory on "The challenges and opportunities for extending plant genomics to climate" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  12. Climate Models from the Joint Global Change Research Institute

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Staff at the Joint Institute develop and use models to simulate the economic and physical impacts of global change policy options. The GCAM, for example, gives analysts insight into how regional and national economies might respond to climate change mitigation policies including carbon taxes, carbon trading, and accelerated deployment of energy technology. Three available models are Phoenix, GCAM, and EPIC. Phoenix is a global, dynamic recursive, computable general equilibrium model that is solved in five-year time steps from 2005 through 2100 and divides the world into twenty-four regions. Each region includes twenty-six industrial sectors. Particular attention is paid to energy production in Phoenix. There are nine electricity-generating technologies (coal, natural gas, oil, biomass, nuclear, hydro, wind, solar, and geothermal) and four additional energy commodities: crude oil, refined oil products, coal, and natural gas. Phoenix is designed to answer economic questions related to international climate and energy policy and international trade. Phoenix replaces the Second Generation Model (SGM) that was formerly used for general equilibrium analysis at JGCRI. GCAM is the Global Change Assessment Model, a partial equilibrium model of the world with 14 regions. GCAM operates in 5 year time steps from 1990 to 2095 and is designed to examine long-term changes in the coupled energy, agriculture/land-use, and climate system. GCAM includes a 151-region agriculture land-use module and a reduced form carbon cycle and climate module in addition to its incorporation of demographics, resources, energy production and consumption. The model has been used extensively in a number of assessment and modeling activities such as the Energy Modeling Forum (EMF), the U.S. Climate Change Technology Program, and the U.S. Climate Change Science Program and IPCC assessment reports. GCAM is now freely available as a community model. The Environmental Policy Integrated Climate (EPIC) Model is a process-based agricultural systems model composed of simulation components for weather, hydrology, nutrient cycling, pesticide fate, tillage, crop growth, soil erosion, crop and soil management and economics. Staff at PNNL have been involved in the development of this model by integrating new sub-models for soil carbon dynamics and nitrogen cycling.

  13. 2012 U.S. Department of Energy: Joint Genome Institute: Progress Report

    SciTech Connect (OSTI)

    Gilbert, David

    2013-01-01

    The mission of the U.S. Department of Energy Joint Genome Institute (DOE JGI) is to serve the diverse scientific community as a user facility, enabling the application of large-scale genomics and analysis of plants, microbes, and communities of microbes to address the DOE mission goals in bioenergy and the environment. The DOE JGI's sequencing efforts fall under the Eukaryote Super Program, which includes the Plant and Fungal Genomics Programs; and the Prokaryote Super Program, which includes the Microbial Genomics and Metagenomics Programs. In 2012, several projects made news for their contributions to energy and environment research.

  14. Fourth National Research Conference on Climate Change Indian Institute of Technology Madras

    E-Print Network [OSTI]

    Srinivasan, N.

    Fourth National Research Conference on Climate Change Indian Institute of Technology Madras October Indian Climate Research Network, are organizing the Fourth National Research Conference on Climate Change on renewable energy. This event, the fourth in the series, intends to nurture and enhance a dedicated network

  15. Rectification and precession signals in the climate system Massachusetts Institute of Technology, Cambridge, Massachusetts, USA

    E-Print Network [OSTI]

    Huybers, Peter

    Rectification and precession signals in the climate system P. Huybers Massachusetts Institute of Technology, Cambridge, Massachusetts, USA C. Wunsch Massachusetts Institute of Technology, Cambridge the amplitude of the seasonal cycle. In a linear climate system, there would be no energy near the 21,000 year

  16. Institute of Functional Genomics, University of Regensburg, Regensburg, Germany. Present address: Center for Systems Biology, Harvard Medical School, Boston, MA.

    E-Print Network [OSTI]

    Rosenberg, Noah

    1 Institute of Functional Genomics, University of Regensburg, Regensburg, Germany. 2 Present, Food and Environment, The Hebrew University of Jeru- salem, Rehovot, Israel. 7 Department of Genetics

  17. Dr. Michael MacCracken, Climate Institute, Washington, DC

    ScienceCinema (OSTI)

    Dr. Michael MacCracken

    2010-01-08

    Achieving International Agreement and Climate Protection by Coordinated Mitigation of Short- and Long-Lived Greenhouse Gases. Presented at the China-US Workshop on the "Climate-Energy Nexus" at Oak Ridge National Laboratory on November 11, 2009.

  18. Multi-institutional project to study climate change's effect...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    from the atmosphere (the carbon sink) may already be declining in response to climate change-induced reductions in precipitation and increases in temperature." Because of Los...

  19. Walker Institute for Climate System Research Research Highlights

    E-Print Network [OSTI]

    Hodges, Kevin

    Director's outlook 3 About us 4 Impacts and consequences A changing climate for Africa 6 Renewable energy Reflecting the Sun's energy to cool the planet 36 Our people 38 #12;3 Director's outlook I am very pleased sector organisations across the world are beginning to incorporate climate risks in their planning

  20. Climate Change Science Institute Oak Ridge National Laboratory

    E-Print Network [OSTI]

    Wang, Xiaorui "Ray"

    Climate Modeling for Energy (ACME) is a DOE's funded, fully-coupled, global earth system model by UT-Battelle for the Department of Energy Current Modeling Projects: ACME and CLM · Accelerated

  1. Illumina Production Sequencing at the DOE Joint Genome Institute - Workflow and Optimizations

    SciTech Connect (OSTI)

    Tarver, Angela; Fern, Alison; Diego, Matthew San; Kennedy, Megan; Zane, Matthew; Daum, Christopher; Hack, Christopher; Tang, Eric; Deshpande, Shweta; Cheng, Jan-Fang; Roberts, Simon; Alexandre, Melanie; Harmon-Smith, Miranda; Lucas, Susan

    2010-06-18

    The U.S. Department of Energy (DOE) Joint Genome Institute?s (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the DOE mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI?s Production Sequencing group, the Illumina Genome Analyzer pipeline has been established as one of three sequencing platforms, along with Roche/454 and ABI/Sanger. Optimization of the Illumina pipeline has been ongoing with the aim of continual process improvement of the laboratory workflow. These process improvement projects are being led by the JGI?s Process Optimization, Sequencing Technologies, Instrumentation& Engineering, and the New Technology Production groups. Primary focus has been on improving the procedural ergonomics and the technicians? operating environment, reducing manually intensive technician operations with different tools, reducing associated production costs, and improving the overall process and generated sequence quality. The U.S. DOE JGI was established in 1997 in Walnut Creek, CA, to unite the expertise and resources of five national laboratories? Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest ? along with HudsonAlpha Institute for Biotechnology. JGI is operated by the University of California for the U.S. DOE.

  2. INCT FOR CLIMATE CHANGE | 2009.2010 | ACTIVITY REPORT | BRAzIL National Institute of Science and

    E-Print Network [OSTI]

    1 INCT FOR CLIMATE CHANGE | 2009.2010 | ACTIVITY REPORT | BRAzIL National Institute of Science and Technology for Climate Change December 2010 ISSN 2179-5754 #12;2 Overall coordination Carlos Programa FAPESP de Pesquisa sobre Mudanças Climáticas Globais Executive Board of INCT for Climate Change

  3. Genomics, Gene Expression and Other Studies in Soybean Rust

    E-Print Network [OSTI]

    Posada-Buitrago, Martha Lucia

    2005-01-01

    Joint Genome Institute Genomics, Gene Expression and otherRust Martha Lucía Posada-Buitrago Ph.D Genomics DivisionEvolutionary Genomics DOE- Joint Genome Institute Lawrence

  4. Climate Science and Climate Economics

    E-Print Network [OSTI]

    Fisher, Anthony

    2014-01-01

    the World Bank by the Potsdam Institute for Climate ImpactResearch and Climate Analytics.of carbon under non-linear climate response. ESRI working

  5. MIDWESTERN REGIONAL CENTER OF THE DOE NATIONAL INSTITUTE FOR CLIMATIC CHANGE RESEARCH

    SciTech Connect (OSTI)

    Burton, Andrew J.

    2014-02-28

    The goal of NICCR (National Institute for Climatic Change Research) was to mobilize university researchers, from all regions of the country, in support of the climatic change research objectives of DOE/BER. The NICCR Midwestern Regional Center (MRC) supported work in the following states: North Dakota, South Dakota, Nebraska, Kansas, Oklahoma, Minnesota, Iowa, Missouri, Wisconsin, Illinois, Michigan, Indiana, and Ohio. The MRC of NICCR was able to support nearly $8 million in climatic change research, including $6,671,303 for twenty projects solicited and selected by the MRC over five requests for proposals (RFPs) and $1,051,666 for the final year of ten projects from the discontinued DOE NIGEC (National Institute for Global Environmental Change) program. The projects selected and funded by the MRC resulted in 135 peer-reviewed publications and supported the training of 25 PhD students and 23 Masters students. Another 36 publications were generated by the final year of continuing NIGEC projects supported by the MRC. The projects funded by the MRC used a variety of approaches to answer questions relevant to the DOE’s climate change research program. These included experiments that manipulated temperature, moisture and other global change factors; studies that sought to understand how the distribution of species and ecosystems might change under future climates; studies that used measurements and modeling to examine current ecosystem fluxes of energy and mass and those that would exist under future conditions; and studies that synthesized existing data sets to improve our understanding of the effects of climatic change on terrestrial ecosystems. In all of these efforts, the MRC specifically sought to identify and quantify responses of terrestrial ecosystems that were not well understood or not well modeled by current efforts. The MRC also sought to better understand and model important feedbacks between terrestrial ecosystems, atmospheric chemistry, and regional and global climate systems. The broad variety of projects the MRC has supported gave us a unique opportunity to greatly improve our ability to predict the future health, composition and function of important agricultural and natural terrestrial ecosystems within the Midwestern Region.

  6. Robotic Enrichment Processing of Roche 454 Titanium Emlusion PCR at the DOE Joint Genome Institute

    SciTech Connect (OSTI)

    Hamilton, Matthew; Wilson, Steven; Bauer, Diane; Miller, Don; Duffy-Wei, Kecia; Hammon, Nancy; Lucas, Susan; Pollard, Martin; Cheng, Jan-Fang

    2010-05-28

    Enrichment of emulsion PCR product is the most laborious and pipette-intensive step in the 454 Titanium process, posing the biggest obstacle for production-oriented scale up. The Joint Genome Institute has developed a pair of custom-made robots based on the Microlab Star liquid handling deck manufactured by Hamilton to mediate the complexity and ergonomic demands of the 454 enrichment process. The robot includes a custom built centrifuge, magnetic deck positions, as well as heating and cooling elements. At present processing eight emulsion cup samples in a single 2.5 hour run, these robots are capable of processing up to 24 emulsion cup samples. Sample emulsions are broken using the standard 454 breaking process and transferred from a pair of 50ml conical tubes to a single 2ml tube and loaded on the robot. The robot performs the enrichment protocol and produces beads in 2ml tubes ready for counting. The robot follows the Roche 454 enrichment protocol with slight exceptions to the manner in which it resuspends beads via pipette mixing rather than vortexing and a set number of null bead removal washes. The robotic process is broken down in similar discrete steps: First Melt and Neutralization, Enrichment Primer Annealing, Enrichment Bead Incubation, Null Bead Removal, Second Melt and Neutralization and Sequencing Primer Annealing. Data indicating our improvements in enrichment efficiency and total number of bases per run will also be shown.

  7. Illumina GA IIx& HiSeq 2000 Production Sequenccing and QC Analysis Pipelines at the DOE Joint Genome Institute

    SciTech Connect (OSTI)

    Daum, Christopher; Zane, Matthew; Han, James; Kennedy, Megan; San Diego, Matthew; Copeland, Alex; Li, Mingkun; Lucas, Susan

    2011-01-31

    The U.S. Department of Energy (DOE) Joint Genome Institute's (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI's Production Sequencing group, a robust Illumina Genome Analyzer and HiSeq pipeline has been established. Optimization of the sesequencer pipelines has been ongoing with the aim of continual process improvement of the laboratory workflow, reducing operational costs and project cycle times to increases ample throughput, and improving the overall quality of the sequence generated. A sequence QC analysis pipeline has been implemented to automatically generate read and assembly level quality metrics. The foremost of these optimization projects, along with sequencing and operational strategies, throughput numbers, and sequencing quality results will be presented.

  8. Bridging the Divide: Linking Genomics to Ecosystem Responses to Climate Change: Final Report

    SciTech Connect (OSTI)

    Smith, Melinda D.

    2014-03-15

    Over the project period, we have addressed the following objectives: 1) assess the effects of altered precipitation patterns (i.e., increased variability in growing season precipitation) on genetic diversity of the dominant C4 grass species, Andropogon gerardii, and 2) experimentally assess the impacts of extreme climatic events (heat wave, drought) on responses of the dominant C4 grasses, A. gerardii and Sorghastrum nutans, and the consequences of these response for community and ecosystem structure and function. Below is a summary of how we have addressed these objectives. Objective 1 After ten years of altered precipitation, we found the number of genotypes of A. gerardii was significantly reduced compared to the ambient precipitation treatments (Avolio et al., 2013a). Although genotype number was reduced, the remaining genotypes were less related to one another indicating that the altered precipitation treatment was selecting for increasingly dissimilar genomes (based on mean pairwise Dice distance among individuals). For the four key genotypes that displayed differential abundances depending on the precipitation treatment (G1, G4, and G11 in the altered plots and G2 in the ambient plots), we identified phenotypic differences in the field that could account for ecological sorting (Avolio & Smith, 2013a). The three altered rainfall genotypes also have very different phenotypic traits in the greenhouse in response to different soil moisture availabilities (Avolio and Smith, 2013c). Two of the genotypes that increased in abundance in the altered precipitation plots had greater allocation to root biomass (G4 and G11), while G1 allocated more biomass aboveground. These phenotypic differences among genotypes suggests that changes in genotypic structure between the altered and the ambient treatments has likely occurred via niche differentiation, driven by changes in soil moisture dynamics (reduced mean, increased variability and changes in the depth distribution of soil moisture) under a more variable precipitation regime, rather than reduced population numbers (A. gerardii tiller densities did not differ between altered and ambient treatments; p = 0.505) or a priori differences in genotype richness (Avolio et al.2013a). This ecological sorting of genotypes, which accounts for 40% of all sampled individuals in the altered plots, is an important legacy of the press chronic climate changes in the RaMPs experiment. Objective 2 In May 2010, we established the Climate Extremes Experiment at the Konza Prairie Biological Station. For the experiment, a gradient of temperatures, ranging from ambient to extreme, were imposed in 2010 and 2011 as a mid-season heat wave under well-watered or severe drought conditions. This study allowed us for the first time to examine species-specific thresholds of responses to climate extremes and assess how these phenotypic responses may impact selection of particular genotypes, with the ultimate goal of linking alterations in individual performance and genetic diversity to ecosystem structure and functioning. We found that tallgrass prairie was resistant to heat waves, but it was not resistant to extreme drought, which reduced aboveground net primary productivity (ANPP) below the lowest level measured in this grassland in almost thirty years (Hoover et al. in press(a)). This extreme reduction in ecosystem function was a consequence of reduced productivity of both C4 grasses and C3 forbs. This reduction in biomass of the C4 grasses (Andropogon gerardii and Sorghastrum nutans) was, in part, due to significant reductions in photosynthesis, leaf water potential and productivity with drought in the dominant grasses species, with S. nutans was more sensitive than A. gerardii to drought (Hoover et al. in press(b)). However, the dominant forb was negatively impacted by the drought more than the dominant grasses, and this led to a reordering of species abundances within the plant community. Although this change in community composition persisted post-drought, ANPP recovered completely the year after drought

  9. James E. Hansen Columbia Univesity Earth Institute, Climate Science, Awareness and Solutions

    E-Print Network [OSTI]

    Hansen, James E.

    for his testimony on climate change to congressional committees in the 1980s that helped raise broad in Climate Science, Awareness and Solutions.. Dr. Hansen is best known for his testimony on climate change the human impact on global climate. He is best known for his testimony on climate change to Congress

  10. James E. Hansen Columbia University Earth Institute, Climate Science, Awareness and Solutions

    E-Print Network [OSTI]

    Hansen, James E.

    for his testimony on climate change to congressional committees in the 1980s that helped raise broad in Climate Science, Awareness and Solutions. Dr. Hansen is best known for his testimony on climate change the human impact on global climate. He is best known for his testimony on climate change to Congress

  11. James E. Hansen Columbia University Earth Institute, Climate Science, Awareness and Solutions

    E-Print Network [OSTI]

    Hansen, James E.

    and Solutions. Dr. Hansen is best known for his testimony on climate change in the 1980s that helped raise's climate, especially human-made climate change. Dr. Hansen is best known for his testimony on climate change to congressional committees in the 1980s that helped raise broad awareness of the global warming

  12. [Climate implications of terrestrial paleoclimate]. Quaternary Sciences Center, Desert Research Institute annual report, fiscal year 1994/1995

    SciTech Connect (OSTI)

    Wigand, P.E.

    1995-12-31

    The objective of this study is to collect terrestrial climate indicators for paleoclimate synthesis. The paleobiotic and geomorphic records are being examined for the local and regional impact of past climates to assess Yucca Mountain`s suitability as a high-level nuclear waste repository. In particular these data are being used to provide estimates of the timing, duration and extremes of past periods of moister climate for use in hydrological models of local and regional recharge that are being formulated by USGS and other hydrologists for the Yucca Mountain area. The project includes botanical, faunal, and geomorphic components that will be integrated to accomplish this goal. To this end personnel at the Quaternary Sciences Center of the Desert Research Institute in Reno, Nevada are conducting the following activities: Analyses of packrat middens; Analysis of pollen samples; and Determination of vegetation climate relationships.

  13. Illumina GA IIx & HiSeq 2000 Production Sequenccing and QC Analysis Pipelines at the DOE Joint Genome Institute

    E-Print Network [OSTI]

    Daum, Christopher

    2011-01-01

    Sequencing and QC Analysis Pipelines at the DOE Joint GenomeSequencing and QC Analysis Pipelines at the DOE Joint GenomeGenome Analyzer and HiSeq pipeline has been established.

  14. EXTREME VALUE ANALYSIS FOR CLIMATE TIME SERIES Institute for Mathematics Applied to Geosciences

    E-Print Network [OSTI]

    Katz, Richard

    Extremes (3) Temporal Dependence / Scaling of Climate Extremes (4) Interpretation of Tail Behavior of floods: Design of dams Flood plain regulation ("100-year flood") #12;6 · Non-Stationarity -- Sources extremes) Sub-divide (e. g., separate analysis by month) #12;7 (2) Statistics of Climate Extremes · Tail

  15. Algal Functional Annotation Tool from the DOE-UCLA Institute for Genomics and Proteomics

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Lopez, David

    The Algal Functional Annotation Tool is a bioinformatics resource to visualize pathway maps, identify enriched biological terms, or convert gene identifiers to elucidate biological function in silico. These types of analysis have been catered to support lists of gene identifiers, such as those coming from transcriptome gene expression analysis. By analyzing the functional annotation of an interesting set of genes, common biological motifs may be elucidated and a first-pass analysis can point further research in the right direction. Currently, the following databases have been parsed, processed, and added to the tool: 1( Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathways Database, 2) MetaCyc Encyclopedia of Metabolic Pathways, 3) Panther Pathways Database, 4) Reactome Pathways Database, 5) Gene Ontology, 6) MapMan Ontology, 7) KOG (Eukaryotic Clusters of Orthologous Groups), 5)Pfam, 6) InterPro.

  16. DIVECHA CENTRE FOR CLIMATE CHANGE INDIAN INSTITUTE OF SCIENCE, BANGALORE-560012

    E-Print Network [OSTI]

    Srinivasan, N.

    , Mumbai 3 Anil Khati Indian Institute of Surveying and Mapping, Survey of India, Hyderabad 4 Archana. P

  17. Western Regional Center of the National Institute for Climatic Change Research

    SciTech Connect (OSTI)

    Hungate, Bruce A.

    2013-05-02

    The major goal of this project was fostering, integrating, synthesizing, and disseminating experimental, observational, and modeling research on predicted climate change in the western region of the U.S. and the impacts of that change on the structure, productivity, and climatic interactions of the region's natural and managed ecological systems. This was accomplished through administering a competitive grants program developed in collaboration with the other four regional centers of the NICCR. The activities supported included efforts to synthesize research on climate change in the western U.S. through meta-analysis studies, model comparisons, and data synthesis workshops. Results from this work were disseminated to the scientific and public media. This project also supported the development of the NICCR web site, hosted at NAU, which was used as the means to accept pre-proposal and proposal submissions for each funding cycle, and served as a clearing house for public outreach for results from NICCR-funded research

  18. UCC UNIVERSITIES CLIMATE UNIVERSITY CLIMATE

    E-Print Network [OSTI]

    Kidston, Joseph

    CONSORTIUM UCC UNIVERSITIES CLIMATE UNIVERSITY CLIMATE World-class excellence Internationally recognised Australia based www.monash.edu.au/climate-consortium CONSORTIUM An International Collaborative of the institutional leads within the UCC: The University Climate Consortium (UCC) comprises four research intensive

  19. FUNCTIONAL GENOMICS Program of Study

    E-Print Network [OSTI]

    Thomas, Andrew

    FUNCTIONAL GENOMICS Program of Study Research Areas Students Applying Correspondence Graduate Genomics. Students receive training in the biological, physical and computational sciences through of primary institutional affiliation. The Functional Genomics program is administered through the Graduate

  20. The Future of Microbial Genomics

    SciTech Connect (OSTI)

    Kyrpides, Nikos [Genome Biology group at the DOE Joint Genome Institute

    2010-06-02

    Nikos Kyrpides, head of the Genome Biology group at the DOE Joint Genome Institute discusses current challenges in the field of microbial genomics on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM

  1. Mind the gap in SEA: An institutional perspective on why assessment of synergies amongst climate change mitigation, adaptation and other policy areas are missing

    SciTech Connect (OSTI)

    Vammen Larsen, Sanne; Kornov, Lone; Wejs, Anja

    2012-02-15

    This article takes its point of departure in two approaches to integrating climate change into Strategic Environmental Assessment (SEA): Mitigation and adaptation, and in the fact that these, as well as the synergies between them and other policy areas, are needed as part of an integrated assessment and policy response. First, the article makes a review of how positive and negative synergies between a) climate change mitigation and adaptation and b) climate change and other environmental concerns are integrated into Danish SEA practice. Then, the article discusses the implications of not addressing synergies. Finally, the article explores institutional explanations as to why synergies are not addressed in SEA practice. A document analysis of 149 Danish SEA reports shows that only one report comprises the assessment of synergies between mitigation and adaptation, whilst 9,4% of the reports assess the synergies between climate change and other environmental concerns. The consequences of separation are both the risk of trade-offs and missed opportunities for enhancing positive synergies. In order to propose explanations for the lacking integration, the institutional background is analysed and discussed, mainly based on Scott's theory of institutions. The institutional analysis highlights a regulatory element, since the assessment of climate change synergies is underpinned by legislation, but not by guidance. This means that great focus is on normative elements such as the local interpretation of legislation and of climate change mitigation and adaptation. The analysis also focuses on how the fragmentation of the organisation in which climate change and SEA are embedded has bearings on both normative and cultural-cognitive elements. This makes the assessment of synergies challenging. The evidence gathered and presented in the article points to a need for developing the SEA process and methodology in Denmark with the aim to include climate change in the assessments in a more systematic and integrated manner. - Highlights: Black-Right-Pointing-Pointer Synergies between climate change mitigation, adaptation and other environmental concerns are not addressed in Danish SEA. Black-Right-Pointing-Pointer Institutional explanations relate to organisational set-ups and understandings of climate change as a new planning issue. Black-Right-Pointing-Pointer The paper points to a need for developing SEA to include climate change in a more systematic and integrated manner.

  2. Final Report: Northeastern Regional Center of the DOE's National Institute for Climatic Change Research

    SciTech Connect (OSTI)

    Davis, Kenneth

    2014-01-14

    Administration of the NERC of NICCR began at Penn State in December of 2005 and ended in December of 2011. During that time, five requests for proposals were released and five rounds of proposals were reviewed, awarded and administered. Throughout this award, 203 pre-proposals have been received by the NERC in five RFPS and 110 full proposals invited. Of the 110 full proposals reviewed, 53 were funded (most in full, some partially) resulting in 51 subcontracts. These awards were distributed among 17 universities and 3 non-governmental research institutes. Full proposals have been received from 29 universities and 5 non-governmental research institutes. Research activities have now been completed.

  3. Joint Genome Institute (JGI)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformationJesse Bergkamp Graduate student Subtask 4Photo of John HrynJohnJoin

  4. Comparative genomics reveals evidence of marine adaptation in Salinispora species.

    E-Print Network [OSTI]

    Penn, Kevin; Jensen, Paul R

    2012-01-01

    in microbial nutrient utilization and energy transduction.Energy Joint Genome Institute website (http://genome. ornl.gov/microbial/

  5. Environmental Genomics Reveals a Single-Species Ecosystem Deep Earth

    E-Print Network [OSTI]

    Arkin, Adam P.

    2014-01-01

    Environmental Genomics Reveals a Single-Species EcosystemTechnology Program, DOE Joint Genomics Institute, Berkeley,and Environmental Research, Genomics:GTL program through

  6. DOE JGI Whole Genome Shotgun Sequencing, part 2

    ScienceCinema (OSTI)

    Miranda Harmon-Smith

    2010-09-01

    A Howard Hughes Medical Institute (HHMI) video production describing the Whole Genome Shotgun Sequencing process at the US Department of Energy's Joint Genome Institute (JGI).

  7. DOE JGI Whole Genome Shotgun Sequencing, part 1

    ScienceCinema (OSTI)

    Miranda Harmon-Smith

    2010-09-01

    A Howard Hughes Medical Institute (HHMI) video production describing the Whole Genome Shotgun Sequencing process at the US Department of Energy's Joint Genome Institute (JGI).

  8. DOE JGI Whole Genome Shotgun Sequencing, part 3

    ScienceCinema (OSTI)

    Miranda Harmon-Smith

    2010-09-01

    A Howard Hughes Medical Institute (HHMI) video production describing the Whole Genome Shotgun Sequencing process at the US Department of Energy's Joint Genome Institute (JGI).

  9. Aspen Global Change Institute (AGCI) Interdisciplinary Science Workshop: Decadal Climate Prediction; Aspen, CO; June 22-28, 2008

    SciTech Connect (OSTI)

    Katzenberger, John

    2010-03-12

    Decadal prediction lies between seasonal/interannual forecasting and longer-term climate change projections, and focuses on time-evolving regional climate conditions over the next 10?30 yr. Numerous assessments of climate information user needs have identified this time scale as being important to infrastructure planners, water resource managers, and many others. It is central to the information portfolio required to adapt effectively to and through climatic changes.

  10. Climate-Energy Nexus

    SciTech Connect (OSTI)

    Gary Sayler; Randall Gentry; Jie Zhuang

    2010-07-01

    The 140-page published proceedings of the workshop include individual articles and PowerPoint slides for all workshop presentations. The proceedings also contain pertinent background information on the China-US Joint Research Center, partnering organizations, and workshop goals and objectives. Overall, the workshop increased the understanding of the impacts of climate change on energy use and renewable energy production as well as the complex relationships among land use, energy production, and ecological restoration. The workshop served as an international platform for scientists and students of different research backgrounds to develop a unified perspective on energy and climate relationships. Such understanding will benefit future cooperation between China and the US in mitigating global climate change. The workshop’s agenda, which is highly interdisciplinary, explored many potential opportunities for international collaboration in ecosystem management, climate modeling, greenhouse gas emissions, and bioenergy sustainability. International research groups have been suggested in the areas of genomes and biotechnology of energy plants, sustainable management of soil and water resources, carbon sequestration, and microbial processes for ecological cycles. The project has attracted considerable attention from institutes beyond the China-US Joint Research Center partners, and several of them (such as Institute of Qing-Tibet Plateau Research, Institute of Soil and Water Conservation, Institute of Applied Ecology, CAS) have expressed interest in joining the partnership. In addition, the workshop played a significant role in facilitating establishment of private-public partnerships between government and private bioenergy companies (such as L.R. Shugarts and Associates, Inc.), including seed providers (Blade Energy Crops, Thousand Oaks, CA), pilot demonstration projects at coal-producing cities (e.g., Huaibei, Anhui province, China), and the development of methodology for assessment of the sustainable production of biofuels (such as life-cycle analysis, sustainability metrics, and land-use policy). Establishment of two US-China scientific research networks in the area of bioenergy and environmental science is a significant result of the workshop.

  11. Fuzzy Genome Sequence Assembly for Single and Environmental Genomes

    E-Print Network [OSTI]

    Nicolescu, Monica

    and to the first genome sequence as- sembly, Bacteriophage X174 [38]. In 1990 the Human Genome Project in 2003, two years before its projected date. #12;2 Sara Nasser, et al In 1993 The Institute for Genome advancements in technology that lead the to complete sequencing of the Human Genome and the H. influenzae

  12. Climate Change and San Francisco Bay-Delta Tidal Wetlands

    E-Print Network [OSTI]

    Parker, V. Thomas; Callaway, John C.; Schile, Lisa M.; Vasey, Michael C.; Herbert, Ellen R.

    2011-01-01

    National Institute for Climate Change Research, Coastalcontext of predicted climate change. Madroño 54(3):234–248.MD. 2005. From climate-change spaghetti to climate-change

  13. Oregon Climate Assessment Report December 2010

    E-Print Network [OSTI]

    Pierce, Stephen

    Oregon Climate Assessment Report December 2010 Oregon Climate Change Research Institute #12;Oregon Climate Assessment Report December 2010 Oregon Climate Change Research Institute Recommended citation: Oregon Climate Change Research Institute (2010), Oregon Climate Assessment Report, K.D. Dello and P

  14. ZipperDB: Predictions of Fibril-forming Segments within Proteins Identified by the 3D Profile Method (from the UCLA-DOE Institute for Genomics and Proteomics)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Goldschmidt, L.; Teng, P. K.; Riek, R.; Eisenberg, D.

    ZipperDB contains predictions of fibril-forming segments within proteins identified by the 3D Profile Method. The UCLA-DOE Institute for Genomics and Proteomics has analyzed over 20,000 putative protein sequences for segments with high fibrillation propensity that could form a "steric zipper"ùtwo self-complementary beta sheets, giving rise to the spine of an amyloid fibril. The approach is unique in that structural information is used to evaluate the likelihood that a particular sequence can form fibrils. [copied with edits from http://www.doe-mbi.ucla.edu/]. In addition to searching the database, academic and non-profit users may also submit their protein sequences to the database.

  15. Environmental genomics reveals a single species ecosystem deep within the Earth

    E-Print Network [OSTI]

    Chivian, Dylan

    2008-01-01

    Environmental genomics reveals a single species ecosystemMaterial for Environmental genomics reveals a single speciesTechnology Program, DOE Joint Genomics Institute, Berkeley,

  16. Methods in comparative genomics: genome correspondence, gene identification and motif discovery

    E-Print Network [OSTI]

    Kellis, Manolis

    1 Methods in comparative genomics: genome correspondence, gene identification and motif discovery@mit.edu, nickp@genome.wi.mit.edu, bwb@genome.wi.mit.edu, bab@mit.edu, lander@wi.mit.edu (1) MIT/Whitehead Institute Center for Genome Research, 320 Charles St., Cambridge MA 02139 (2) MIT Computer Science

  17. Fueling Future with Algal Genomics (Conference) | SciTech Connect

    Office of Scientific and Technical Information (OSTI)

    carbon cycle, and are prominent candidates for biofuel production. The US Department of Energy Joint Genome Institute (JGI) is leading the world in algal genome sequencing...

  18. Climate Change and San Francisco Bay-Delta Tidal Wetlands

    E-Print Network [OSTI]

    Parker, V. Thomas; Callaway, John C.; Schile, Lisa M.; Vasey, Michael C.; Herbert, Ellen R.

    2011-01-01

    National Institute for Climate Change Research, Coastalthe context of predicted climate change. Madroño 54(3):234–18–20. Dettinger MD. 2005. From climate-change spaghetti to

  19. Hindawi Publishing Corporation Comparative and Functional Genomics

    E-Print Network [OSTI]

    Newcastle upon Tyne, University of

    Hindawi Publishing Corporation Comparative and Functional Genomics Volume 2007, Article ID 47304, 7 pages doi:10.1155/2007/47304 Meeting Report eGenomics: Cataloguing Our Complete Genome Collection III, Michigan State University, East Lansing, MI 48824, USA 3 The Institute for Genomic Research, 9712 Medical

  20. SHORT REVIEW Ecological genomics: understanding gene and

    E-Print Network [OSTI]

    Herman, Mike

    SHORT REVIEW Ecological genomics: understanding gene and genome function in the natural environment MC Ungerer, LC Johnson and MA Herman Division of Biology, Ecological Genomics Institute, Kansas State University, Manhattan, KS, USA The field of ecological genomics seeks to understand the genetic mechanisms

  1. Defining Genome Project Standards in a New Era of Sequencing

    SciTech Connect (OSTI)

    Chain, Patrick [DOE-JGI

    2009-05-27

    Patrick Chain of the DOE Joint Genome Institute gives a talk on behalf of the International Genome Sequencing Standards Consortium on the need for intermediate genome classifications between "draft" and "finished"

  2. Training for Climate Adaptation in Conservation

    Office of Energy Efficiency and Renewable Energy (EERE)

    The Wildlife Conservation Society and the Northern Institute of Applied Climate Science are hosting this two-day training for climate adaptation.

  3. THE CAMPAIGN FOR UC SANTA CRUZ THE GENOMICS

    E-Print Network [OSTI]

    California at Santa Cruz, University of

    THE CAMPAIGN FOR UC SANTA CRUZ THE GENOMICS INSTITUTE #12;OVERVIEW The UC Santa Cruz Genomics Institute provides the framework for the next great leap in the science of genomics. ensured it would genomic science and speed the benefits of discoveries that improve and save lives. Cancer, autoimmune

  4. THE CAMPAIGN FOR UC SANTA CRUZ THE GENOMICS

    E-Print Network [OSTI]

    California at Santa Cruz, University of

    THE CAMPAIGN FOR UC SANTA CRUZ THE GENOMICS INSTITUTE #12;T he promise of genomics to revolutionize. We imagine a future in which genomic data is a tool for fighting diseases--from childhood cancer Genome Project to today's effort to create international protocols for sharing and interpreting genomic

  5. The Genome of Deep-Sea Vent Chemolithoautotroph Thiomicrospira...

    Office of Scientific and Technical Information (OSTI)

    Tampa Woods Hole Oceanographic Institution (WHOI), Woods Hole, MA ORNL U.S. Department of Energy, Joint Genome Institute University of Missouri, Columbia Richard Stockton College...

  6. Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting

    E-Print Network [OSTI]

    Botstein, David

    Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome Jodi E. Hirschman, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, 5-Sigler Institute for Integrative Genomics, Carl Icahn Laboratory, Princeton University, Washington Road, Princeton

  7. Campus Climate Survey Binghamton University

    E-Print Network [OSTI]

    Zhang, Zhongfei "Mark"

    1 Campus Climate Survey Binghamton University 2014-15 Office of Diversity, Equity a campus climate that values diversity, equity and inclusion. One of the early tasks of ODEI was to conduct a campus-wide "Campus Climate Survey" to gather a variety of data related to institutional climate

  8. Climate risk Learning from practice

    E-Print Network [OSTI]

    Smerdon, Jason E.

    Climate risk management in Africa: Learning from practice ClimateandSocietyNo.1 #12;The Climate and Society series is devoted to providing authoritative and accessible information on climate risk management of the International Research Institute for Climate and Society (IRI). IRI aims to contribute to sustainable living

  9. www.climate.iitb.ac.in 1st CLIMATE SCIENCE AND

    E-Print Network [OSTI]

    Sarawagi, Sunita

    www.climate.iitb.ac.in 1st CLIMATE SCIENCE AND POLICY WORKSHOP (CSPW)(CSPW) 6th & 7th March, 2014 a scientific understanding of regional climate change and connect it to impacts and effective response. www.climate.iitb.ac.in #12;Interdisciplinary Programme in Climate Studies Indian Institute of Technology Bombay The Climate

  10. Leading Edge Bacterial Genomics and Pathogen Evolution

    E-Print Network [OSTI]

    Mekalanos, John

    Leading Edge Review Bacterial Genomics and Pathogen Evolution David M. Raskin,1 Rekha Seshadri,2 Medical School, Boston, MA 02115, USA 2 The Institute for Genomic Research, 9712 Medical Center Drive.02.002 The availability of hundreds of bacterial genome sequences has altered the study of bacte- rial pathogenesis

  11. Climate modulates internal wave activity in the Northern South China Sea

    E-Print Network [OSTI]

    Decarlo, TM; Karnauskas, KB; Davis, KA; Wong, GTF

    2015-01-01

    WHOI Oceans and Climate Change Institute/Moltz Fellowshipfor mitigating climate change impacts on coastal ecosystems.from the impacts of climate change. 5. Conclusions Over the

  12. Accelerating Biofuel Feedstock Crop Improvement with Miscanthus Genomics (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Swaminathan, Kankshita [Energy Biosciences Institute

    2014-03-20

    Kankshita Swaminathan of the Energy Biosciences Institute speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  13. JIBS | Joint Institute for Biological Sciences | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    joint institute is located close to ORNL's Laboratory for Comparative and Functional Genomics, other biomolecular sciences research laboratories, and the Environmental Sciences...

  14. Discovering Geometric Patterns in Genomic Data Wenxuan Gao

    E-Print Network [OSTI]

    Grossman, Robert

    Discovering Geometric Patterns in Genomic Data Wenxuan Gao Department of Computer Science University of Illinois at Chicago wgao5@uic.edu Christopher Brown Institute for Genomics & Systems Biology caseybrown@uchicago.edu Robert L. Grossman Institute for Genomics & Systems Biology robert.grossman @uchicago

  15. Energy, Climate & Infrastructure Security

    E-Print Network [OSTI]

    Energy, Climate & Infrastructure Security EXCEPTIONAL SERVICE IN THE NATIONAL INTEREST Sandia, and reactorsystemoverviews. Training in Action: Gulf Nuclear Energy InfrastructureInstitute In2011,SandiateamedwiththeNuclearSecurity energy safety, security,safeguards,andnonproliferation. Training Sandia National Laboratories experts

  16. Climate Action Champions: Resilience and Equity Webinar | Department...

    Broader source: Energy.gov (indexed) [DOE]

    and the National Institute of Environmental Health Sciences discussed issues of climate change resilience and equity, including the impacts of climate change on different...

  17. Ensemble climate predictions using climate models and observational constraints

    E-Print Network [OSTI]

    REVIEW Ensemble climate predictions using climate models and observational constraints BY PETER A. STOTT 1,* AND CHRIS E. FOREST 2 1 Hadley Centre for Climate Change (Reading Unit), Meteorology Building, Massachusetts Institute of Technology, Cambridge, MA 02139, USA Two different approaches are described

  18. Prescreening Illumina Data Results in High-Quality Genome Polishing

    SciTech Connect (OSTI)

    Han, Cliff [DOE Joint Genome Institute at Los Alamos National Laboratory

    2009-05-28

    Cliff Han of the DOE Joint Genome Institute at Los Alamos National Laboratory, talks about modifying their bacterial genome sequencing process to accommodate new sequencing technologies at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM

  19. Genome duplications (polyploidy) / ancientGenome duplications (polyploidy) / ancient genome duplications (genome duplications (paleopolyploidypaleopolyploidy))

    E-Print Network [OSTI]

    Utrecht, Universiteit

    Genome duplications (polyploidy) / ancientGenome duplications (polyploidy) / ancient genome duplications (genome duplications (paleopolyploidypaleopolyploidy)) Mechanism? e.g. a diploid cell undergoes;Paramecium genome duplicationsParamecium genome duplications #12;Comparison of two scaffolds originating from

  20. Functional genomics as a window on radiation stress signaling Sally A Amundson*,1

    E-Print Network [OSTI]

    Functional genomics as a window on radiation stress signaling Sally A Amundson*,1 , Michael Bittner 20892, USA; 2 National Human Genome Research Institute, National Institutes of Health, Bethesda, MD before the completion of the human genome draft sequence, a number of techniques for genomic expression

  1. ENERGY, WEATHER AND Walker Institute Research

    E-Print Network [OSTI]

    Hodges, Kevin

    ENERGY, WEATHER AND CLIMATE Walker Institute Research Climate scientists and engineers are working together to understand the impacts of weather and climate on energy systems. WEATHER, CLIMATE AND ENERGY new risks to the energy sector. With the increasing deployment of variable, renewable energy

  2. Molluscan Evolutionary Genomics

    E-Print Network [OSTI]

    Simison, W. Brian

    2010-01-01

    59179 Molluscan Evolutionary Genomics W. Brian Simison andBoore Molluscan Evolutionary Genomics W. Brian Simison andL. Boore Evolutionary Genomics Department, DOE Joint Genome

  3. Insular Organization of Gene Space in Grass Genomes Andrea Gottlieb1.

    E-Print Network [OSTI]

    Müller, Hans-Georg

    Insular Organization of Gene Space in Grass Genomes Andrea Gottlieb1. , Hans-Georg Mu¨ ller1 States of America, 2 Institute of Plant Breeding, Genetics and Genomics (Department of Crop and Soil Venter Institute, Rockville, Maryland, United States of America, 6 Institute for Genome Sciences

  4. NERSC/DOE BER Requirements Workshop Participants

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Gilbert Compo University of Colorado Climate Robert Egan Joint Genome Institute Genomics David Goodstein Joint Genome Institute Genomics Ruby Leung Pacific Northwest National...

  5. Carbon Dioxide and Climate: A Scientific Assessment

    E-Print Network [OSTI]

    Schwartz, Stephen E.

    Carbon Dioxide and Climate: A Scientific Assessment Report of an Ad Hoc Study Group on Carbon on Carbon Dioxide and Climate Jule G. Charney, Massachusetts Institute of Technology, Chairman Akio Arakawa Dioxide and Climate Woods Hole, Massachusetts July 23-27, 1979 to the Climate Research Board Assembly

  6. Genome Engineering

    SciTech Connect (OSTI)

    Voytas, Dan [University of Minnesota

    2014-03-20

    Dan Voytas, University of Minnesota, at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif

  7. A Framework for Modeling Uncertainty in Regional Climate Change

    E-Print Network [OSTI]

    climate models). The modeling framework revolves around the Massachusetts Institute of Technology (MITA Framework for Modeling Uncertainty in Regional Climate Change Erwan Monier, Xiang Gao, Jeffery processes of policy development and implementation, climate change research needs to focus on improving

  8. Fueling Future with Algal Genomics Grigoriev, Igor 59 BASIC BIOLOGICAL

    Office of Scientific and Technical Information (OSTI)

    play profound roles in the carbon cycle, and are prominent candidates for biofuel production. The US Department of Energy Joint Genome Institute (JGI) is leading the world...

  9. Genomics and Systems Biology of Tuberculosis (2009 JGI User Meeting)

    ScienceCinema (OSTI)

    Galagan, James

    2011-04-25

    James Galagan from the Broad Institute spoke about the "Genomics and Systems Biology of TB" on March 26, 2009 during the 4th Annual User Meeting

  10. Implications of Climate Science for Policy

    E-Print Network [OSTI]

    Jacoby, H.D.

    2013-07-18

    Climate change presents the greatest challenge ever faced by our domestic and international institutions, and a great deal of the difficulty lies in the science of the issue. Because human influence on global climate differs ...

  11. Center for Climate Systems Modeling Center for Climate Systems Modeling (C2SM)

    E-Print Network [OSTI]

    Fischlin, Andreas

    C2SM Center for Climate Systems Modeling Contact Center for Climate Systems Modeling (C2SM) Dr of the Earth's weather and climate.» Nicolas Gruber, Chair C2SM Partner institutions · ETH Zurich: Swiss Federal Institute of Technology Zurich · MeteoSwiss: Federal Office of Meteorology and Climatology · Empa

  12. CLIMATE CHANGE WHAT IS CLIMATE CHANGE?

    E-Print Network [OSTI]

    Walter, Frederick M.

    is the global power sector ¡ Generates around 40% of all global electricity from coal ¡ The power sector of Tons of Carbon Dioxide *an estimate from the World Resources Institute STEPS TAKEN TO COMBAT CLIMATE Kullen v. Wild by Nature ¡ WBN is an organic market also owned by King Kullen ¡ Prices nearly doubled

  13. Climate & Environmental Sciences | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    global scales. Focus Areas Climate Change Science Institute Earth and Aquatic Sciences Ecosystem Science Energy-Water Resource Systems Environmental Data Science and Systems...

  14. Accelerated Climate Modeling for Energy | Argonne Leadership...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Credit: Alan Scott and Mark Taylor, Sandia National Laboratories Accelerated Climate Modeling for Energy PI Name: Mark Taylor PI Email: mataylo@sandia.gov Institution: Sandia...

  15. Reference-Free Comparative Genomics of 174 Chloroplasts

    E-Print Network [OSTI]

    Reference-Free Comparative Genomics of 174 Chloroplasts Chai-Shian Kua1,2 , Jue Ruan3 , John's Republic of China, 3 The CAS Key Laboratory of Genome Science and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People's Republic of China, 4 Department of Biological

  16. Potential of metabolomics as a functional genomics tool

    E-Print Network [OSTI]

    Wurtele, Eve Syrkin

    Potential of metabolomics as a functional genomics tool Raoul J. Bino1,2,3 , Robert D. Hall2 3 Centre for BioSystems Genomics, POB 98, 6700 AB Wageningen, The Netherlands 4 Max-Planck Institute Australian Centre for Plant Functional Genomics, School of Botany, University of Melbourne, Victoria 3010

  17. The Earth Institute, Columbia University14 Annual Donor Report 2009 15 Heat waves are on the rise as the climate changes and average temperatures increase.

    E-Print Network [OSTI]

    to cooling cities and helping control stormwater pollution, among other benefits. Scientists at the Earth Institute are at the forefront of this new take on high-elevation gardening. New York City has between 30 overflows, remove air pollution, absorb acid rain and provide insulation for the buildings beneath them

  18. JGI Fungal Genomics Program

    E-Print Network [OSTI]

    Grigoriev, Igor V.

    2012-01-01

    JGI Fungal Genomics Program Igor V. Grigoriev 1 Lawrenceof California. JGI Fungal Genomics Program Contact: IgorJGI). Its key project, the Genomics Encyclopedia of Fungi,

  19. JGI Fungal Genomics Program

    E-Print Network [OSTI]

    Grigoriev, Igor V.

    2011-01-01

    View Supports functional genomics, user data deposition andJGI Fungal Genomics Program Igor V. Grigoriev 1 DOE Jointof California. JGI Fungal Genomics Program Contact: Igor

  20. Fungal Genomics Program

    E-Print Network [OSTI]

    Grigoriev, Igor

    2012-01-01

    strains Comparative genomics and transcriptomics of xyloseFungal Genomics Program Igor Grigoriev 1 * (complex communities Fungal Genomics Program Igor Grigoriev

  1. First anniversary gift for Critical Material Institute? Inventions...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    teamwork by our researchers and their support staff." The institute even won a nod from the White House as it celebrated the third anniversary of the Materials Genome...

  2. Selecting Genomes for Reconstruction of Ancestral Genomes

    E-Print Network [OSTI]

    Zhang, Louxin

    Selecting Genomes for Reconstruction of Ancestral Genomes Guoliang Li1 , Jian Ma2 , and Louxin. It is often impossible to sequence all descendent genomes to reconstruct an ancestral genome. In addition, more genomes do not neces- sarily give a higher accuracy for the reconstruction of ancestral character

  3. New Approaches and Technologies to Sequence de novo Plant reference Genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Schmutz, Jeremy [HudsonAlpha Institute

    2013-03-01

    Jeremy Schmutz of the HudsonAlpha Institute for Biotechnology on "New approaches and technologies to sequence de novo plant reference genomes" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  4. CLIMATE RISK AND CLIMATE CHANGE

    E-Print Network [OSTI]

    Smerdon, Jason E.

    CLIMATE RISK AND CLIMATE CHANGE Scenarios of what the climate will be like 50 to 100 years from now associated with climate change demand these efforts continue. However, the long time horizons have led many decision makers to regard climate change as a problem of the distant future. But is it? I n many regions

  5. An initial strategy for the systematic identification of functional elements in the human genome by

    E-Print Network [OSTI]

    Miller, Webb

    An initial strategy for the systematic identification of functional elements in the human genome*§ , Eric S. Lander , James C. Mullikin*§ **, and Michele Clamp ** *Genome Technology Branch and §NISC, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892; Broad

  6. Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark

    E-Print Network [OSTI]

    Ussery, David W.

    Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark Burkholderia Pan-genomics Dave Ussery Max Planck Institut fur Terrestrial Microbiology Marburg, Germany 26 May, 2008 - or - What can we learn from more than 50 sequenced genomes? #12;Comparative Microbial Genomics

  7. Building on a Decade of Accomplishments Report of the 2010 Blue Ribbon Panel on Genomics

    E-Print Network [OSTI]

    Levin, Judith G.

    Building on a Decade of Accomplishments Report of the 2010 Blue Ribbon Panel on Genomics Division of Microbiology and Infectious Diseases, Genomics Programs National Institute of Allergy and Infectious Diseases Blue Ribbon Panel on Genomics Division of Microbiology and Infectious Diseases, Genomics Programs

  8. Enhancing a Genome Database Using the XSB Tabled Logic Programming System

    E-Print Network [OSTI]

    Davulcu, Hasan

    goal of the Human Genome Project 1] is to construct detailed physical maps of the human genome Research at the Whitehead Institute in MIT is engaged in several large-scale genome mapping projectsEnhancing a Genome Database Using the XSB Tabled Logic Programming System Hasan Davulcu I

  9. Joint Genome Institute's Automation Approach and History

    E-Print Network [OSTI]

    Roberts, Simon

    2006-01-01

    DOE & NIH present their joint HGP plan to Congress. The 15-staff from LLNL & LBNL. 2000 HGP leaders & President Clintonof the 21st century. ” 2003 HGP completed and published.

  10. DOE Joint Genome Institute 2008 Progress Report

    E-Print Network [OSTI]

    Gilbert, David

    2009-01-01

    and Outreach Safety and Ergonomics Appendices Appendix A:QA, Instrumenta- tion, Ergonomics, Informatics) in the pastReport 2008 safety and ergonomics Safety is a core value of

  11. DOE Joint Genome Institute 2008 Progress Report

    E-Print Network [OSTI]

    Gilbert, David

    2009-01-01

    digestion, could produce biogas—primarily methane and carbongasoline per day. When biogas is cleaned of its particulates

  12. DOE Joint Genome Institute 2008 Progress Report

    E-Print Network [OSTI]

    Gilbert, David

    2009-01-01

    ries Oak Ri a ato nt o DO me e DOE l labor amos, onAlph ar tio teg ac ana hem dP or B DOE m ogeoc ides in tional achesmanufacturer, or otherwise, does not necessarily constitute

  13. DOE Joint Genome Institute 2008 Progress Report

    E-Print Network [OSTI]

    Gilbert, David

    2009-01-01

    an emerging feed- stock for biodiesel production. Soybean iscenters on its use in biodiesel, a renewable alternativefor more than 80% of biodiesel production. The soybean

  14. Today, DOE's Joint Genome Institute (a

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power AdministrationRobust,Field-effectWorking With U.S.Week DayDr.Theories81 to 1990Be PreseRted1 6/1/2011 6.2

  15. Climate-development-energy policy related seminars

    E-Print Network [OSTI]

    Sussex, University of

    Climate-development-energy policy related seminars Autumn term 2013 Date Time Location Speaker Paula Kivimaa (Finnish Environment Institute) From energy to climate policy in Finland Energy & climate. 13.00- 14.00 Jub G-31 Colin Nolden (SPRU) Governing community energy - Feed-in tariffs

  16. RNAi-Assisted Genome Evolution in Saccharomyces cerevisiae for Complex Phenotype Engineering

    E-Print Network [OSTI]

    Zhao, Huimin

    RNAi-Assisted Genome Evolution in Saccharomyces cerevisiae for Complex Phenotype Engineering Tong Si, Yunzi Luo, Zehua Bao, and Huimin Zhao*,,,§ Department of Chemical and Biomolecular Engineering, Department of Biochemistry, § Departments of Chemistry and Bioengineering, Institute for Genomic Biology

  17. A GSC Global Genome Census (GSC8 Meeting)

    ScienceCinema (OSTI)

    Kyrpides, Nikos [DOE JGI

    2011-04-29

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Nikos Kyrpides of the DOE Joint Genome Institute discusses the notion of a global genome census at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

  18. Genomics and the human genome project: implications for psychiatry

    E-Print Network [OSTI]

    Kelsoe, J R

    2004-01-01

    300 Genomics and the Human Genome Project: implications forpast decade the Human Genome Project has made extraordinaryto each other. The Human Genome Project has approached human

  19. Microbes in thawing permafrost: the unknown variable in the climate...

    Office of Scientific and Technical Information (OSTI)

    and Biological Problems in Soil Science, Russian Academy of Sciences U.S. Department of Energy, Joint Genome Institute Bob L ORNL Alfred Wegener Institute for Polar and Marine...

  20. Genome Analyses and Supplement Data from the International Populus Genome Consortium (IPGC)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    International Populus Genome Consortium (IPGC)

    The sequencing of the first tree genome, that of Populus, was a project initiated by the Office of Biological and Environmental Research in DOE’s Office of Science. The International Populus Genome Consortium (IPGC) was formed to help develop and guide post-sequence activities. The IPGC website, hosted at the Oak Ridge National Laboratory, provides draft sequence data as it is made available from DOE Joint Genome Institute, genome analyses for Populus, lists of related publications and resources, and the science plan. The data are available at http://www.ornl.gov/sci/ipgc/ssr_resource.htm.

  1. Environmental Physics Group Newsletter September 2013 Weather and Climate Modelling

    E-Print Network [OSTI]

    Williams, Paul

    Environmental Physics Group Newsletter September 2013 9 Weather and Climate Modelling Imperial and the Grantham Institute for Climate Change A half-day meeting on the topic of 'Should weather and climate increasingly common to represent subgrid-scale features in weather and climate models by including random noise

  2. STATISTICS OF EXTREMES IN CLIMATE CHANGE Richard W. Katz

    E-Print Network [OSTI]

    Katz, Richard

    Covariates in extRemes (2) Climate Change Applications (2.1) Block maxima approach Simulated data from GEVSTATISTICS OF EXTREMES IN CLIMATE CHANGE Richard W. Katz Institute for Study of Society the application of the statistical theory of extreme values to climate, in general, and to climate change

  3. ITF CLIMATE CHANGE CONFERENCE MEXICO CITY 4 AUGUST 2010

    E-Print Network [OSTI]

    Danforth, Bryan Nicholas

    ITF CLIMATE CHANGE CONFERENCE MEXICO CITY 4 AUGUST 2010 DISCUSSION DOCUMENT TRANSPORT WORKERS AND CLIMATE CHANGE: TOWARDS SUSTAINABLE, LOW-CARBON MOBILITY ITF CLIMATE CHANGE WORKING GROUP IN COLLABORATION Climate Change Working Group in collaboration with the Global Labor Institute (GLI), School of Industrial

  4. Climate Ethics and Responsibility A Study of Environmental Virtue

    E-Print Network [OSTI]

    Greifswald, Ernst-Moritz-Arndt-Universität

    Climate Ethics and Responsibility A Study of Environmental Virtue Institute for Botany. Theoretical Concept 2.1. General Concept of Climate Ethics 2.2. Responsibility for Climate Change Mitigation2.2. Responsibility for Climate Change Mitigation 2.3. Moral Transformational Leadership 3. Application to Carbon

  5. UNEP Ris Centre Energy, Climate and Sustainable Development

    E-Print Network [OSTI]

    UNEP Risø Centre ­ Energy, Climate and Sustainable Development International and Danish research's energy and climate programmes. · Projects are mainly funded by bilateral or multilateral institutions energy projects and designing energy projects that impact better on the development process (MDGs

  6. GOLD: The Genomes Online Database

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Kyrpides, Nikos; Liolios, Dinos; Chen, Amy; Tavernarakis, Nektarios; Hugenholtz, Philip; Markowitz, Victor; Bernal, Alex

    Since its inception in 1997, GOLD has continuously monitored genome sequencing projects worldwide and has provided the community with a unique centralized resource that integrates diverse information related to Archaea, Bacteria, Eukaryotic and more recently Metagenomic sequencing projects. As of September 2007, GOLD recorded 639 completed genome projects. These projects have their complete sequence deposited into the public archival sequence databases such as GenBank EMBL,and DDBJ. From the total of 639 complete and published genome projects as of 9/2007, 527 were bacterial, 47 were archaeal and 65 were eukaryotic. In addition to the complete projects, there were 2158 ongoing sequencing projects. 1328 of those were bacterial, 59 archaeal and 771 eukaryotic projects. Two types of metadata are provided by GOLD: (i) project metadata and (ii) organism/environment metadata. GOLD CARD pages for every project are available from the link of every GOLD_STAMP ID. The information in every one of these pages is organized into three tables: (a) Organism information, (b) Genome project information and (c) External links. [The Genomes On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata, Konstantinos Liolios, Konstantinos Mavromatis, Nektarios Tavernarakis and Nikos C. Kyrpides, Nucleic Acids Research Advance Access published online on November 2, 2007, Nucleic Acids Research, doi:10.1093/nar/gkm884]

    The basic tables in the GOLD database that can be browsed or searched include the following information:

    • Gold Stamp ID
    • Organism name
    • Domain
    • Links to information sources
    • Size and link to a map, when available
    • Chromosome number, Plas number, and GC content
    • A link for downloading the actual genome data
    • Institution that did the sequencing
    • Funding source
    • Database where information resides
    • Publication status and information

    (Specialized Interface)

  7. The Human Genome From human genome to other

    E-Print Network [OSTI]

    Linial, Michal

    The Human Genome Project From human genome to other genomes and to gene function June 2000 From genome to health Structural Genomics initiative #12;What is the Human Genome Project? · U.S. govt that arise from genome research #12;The Human Genome Project Project began in 1990 as a $3 billion, 15-year

  8. 388 nature genetics volume 22 august 1999 A YAC-based physical map of the mouse genome

    E-Print Network [OSTI]

    Boguski, Mark S.

    goals of the Human Genome Project1. Here we report the results of a project at the Whitehead Institute of approximately 92% of the mouse genome. We also report the results of a project at the MRC UK Mouse Genome Centre assembling a physical map of the human genome3. The STSs used for screening came from several sources: simple

  9. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology LANL leads the world in computational finishing of microbial genomes Read caption + In 2013, Los Alamos scientist Richard Sayre and his team...

  10. Climate Models and Climate Change Guillaume Mauger

    E-Print Network [OSTI]

    Climate Models and Climate Change Guillaume Mauger gmauger@uw.edu Climate Impacts Group University of Washington Outline: · Climate Change 101 · Why do we care? · Climate models: · About, UncertainDes, Performance, and Projec

  11. ESTIMATING RISK TO CALIFORNIA ENERGY INFRASTRUCTURE FROM PROJECTED CLIMATE CHANGE

    E-Print Network [OSTI]

    Sathaye, Jayant

    2011-01-01

    Climate change and electricity demand in California. ”Extreme Heat, and Electricity Demand in California. CEC-500-Future Residential Electricity Demand." Energy Institute at

  12. Genome patent fight erupts

    SciTech Connect (OSTI)

    Roberts, L.

    1991-10-11

    At a Congressional briefing while describing a new project to sequence partially every gene active in the human brain, it was made known that the National Institutes of Health was planning to file patent applications on 1,000 of these sequences a month. The scheme has engendered a firestorm of criticism from genome scientists and project officials alike. The critics argue that these sequences probably can't be patented in the first place - and even if they can, they shouldn't be. The plan would undercut patent protection for those who labor long and hard at the real task of elucidating the function of the proteins encoded by the genes, thereby driving industry away from developing inventions based on that work.

  13. Whole Genome Sequencing of Individual Bacterial Cells from the Ocean

    SciTech Connect (OSTI)

    Malmstrom, Rex [DOE Joint Genome Institute

    2010-06-04

    Rex Malmstrom of the DOE Joint Genome Institute discusses single-cell sequencing of Prochlorococcus on June 4, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM

  14. The Comparative Genomics of Salinispora and the Distribution and Abundance of Secondary Metabolite Genes in Marine Plankton

    E-Print Network [OSTI]

    Penn, Kevin Matthew

    2012-01-01

    in microbial nutrient utilization and energy transduction.Energy Joint Genome Institute website (genome.ornl.gov/microbial/microbial loop was coined to describe the major role microbes have in the transformation of matter and energy

  15. The comparative genomics of salinispora and the distribution and abundance of secondary metabolite genes in marine plankton

    E-Print Network [OSTI]

    Penn, Kevin Matthew

    2012-01-01

    in microbial nutrient utilization and energy transduction.Energy Joint Genome Institute website (genome.ornl.gov/microbial/microbial loop was coined to describe the major role microbes have in the transformation of matter and energy

  16. Climate Change Science Institute | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    brings together all these approaches-field experiments, modeling and simulation, data management-and then weaves a picture of the future. This integrative approach provides the...

  17. Global Climate Change Institute | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTION J APPENDIX E LISTStar2-0057-EA Jump to:ofEniaElectric JumpAtlas for Solar and Wind

  18. Operations capability improvement of a molecular biology laboratory in a high throughput genome sequencing center

    E-Print Network [OSTI]

    Vokoun, Matthew R. (Matthew Richard)

    2005-01-01

    The Broad Institute is a research collaboration of MIT, Harvard University and affiliated hospitals, and the Whitehead Institute for Biomedical Research. Its scientific mission is to "(1) create tools for genomic medicine ...

  19. The Lorenz Center Massachusetts Institute of Technology

    E-Print Network [OSTI]

    Rothman, Daniel

    The Lorenz Center Massachusetts Institute of Technology #12;The Lorenz Center: A Fresh Approach to Climate Science Founded by Professor of Atmospheric Science Kerry Emanuel and Professor of Geophysics exciting new results in climate science to the general public. The 2011 inaugural lecture featured Paul

  20. Personal Genomics, Personalized Medicine,

    E-Print Network [OSTI]

    Napp, Nils

    /Science Translational Medicine panel discussion; MLA 2012 #12;Timeline: Human Genome Sequence HSLS, U.Pitt 1995 2014 2000 2003 2007 2007 2010 Human Genome Draft Sequence Complete Human Reference Genome Individual Human of a free living organism: Haemophilus Influenzae #12;Personal Genome Project HSLS, U.Pitt #12;Why get

  1. Financial Institutions

    Broader source: Energy.gov [DOE]

    A lending program begins with a financial institution that procures the funds they lend from a number of other sources.

  2. Comparative Genomics of Transcriptional Control in the Human Malaria Parasite Plasmodium falciparum

    E-Print Network [OSTI]

    Arnold, Jonathan

    Comparative Genomics of Transcriptional Control in the Human Malaria Parasite Plasmodium falciparum Richard M.R. Coulson,1,3 Neil Hall,2 and Christos A. Ouzounis1 1 Computational Genomics Group10 1SD, United Kingdom; 2 The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus

  3. Improved Yield and Diverse Finished Bacterial Genomes using Pacific Biosciences RS II SMRT Sequencing

    E-Print Network [OSTI]

    Weber, David J.

    Improved Yield and Diverse Finished Bacterial Genomes using Pacific Biosciences RS II SMRT-Cruz, Alvaro Godinez, Luke J. Tallon Institute for Genome Sciences, University of Maryland School of Medicine, effective, and highly accurate platform for generation of complete microbial genome sequences. As early

  4. Corrigendum Corrigendum to ddApplications of DNA tiling arrays for whole-genome

    E-Print Network [OSTI]

    Jacobsen, Steve

    Corrigendum Corrigendum to ddApplications of DNA tiling arrays for whole-genome analysisTT [Genomics 85 (2005) 1­15] Todd C. Mocklera , Simon Chanc , Ambika Sundaresana,b , Huaming Chenb , Steven E Jolla, CA 92037, USA b Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla

  5. A Tournament Approach to the Detection of Multiple Associations in Genome-wide Studies

    E-Print Network [OSTI]

    Chen, Jiahua

    A Tournament Approach to the Detection of Multiple Associations in Genome-wide Studies of Waterloo 3 Genome Institute of Singapore Correspondence Author: Zehua Chen Department of Statistics@nus.edu.sg 1 #12;Abstract Genome-wide association studies become feasible and promising with the availability

  6. The evolution of modularity in genome architecture John W. Pepper 1

    E-Print Network [OSTI]

    Nehaniv, Chrystopher

    The evolution of modularity in genome architecture John W. Pepper 1 1 Santa Fe Institute, Santa Fe phenomenon is modularity in genome architecture, in which genes with epistatic effects are co­ localized of genome modularity were investigated using a computational model, in which a population of individuals

  7. Whole-genome Comparative Annotation and Regulatory Motif Discovery in Multiple Yeast Species

    E-Print Network [OSTI]

    Kellis, Manolis

    Whole-genome Comparative Annotation and Regulatory Motif Discovery in Multiple Yeast Species@mit.edu, nickp@genome.wi.mit.edu, birren@wi.mit.edu, bab@mit.edu, lander@wi.mit.edu (1) MIT/Whitehead Institute Center for Genome Research, 320 Charles St., Cambridge MA 02139 (2) MIT Lab for Computer Science, 200

  8. Complete Genome Sequence of the hyperthermophilic sulfate-reducing bacterium Thermodesulfobacterium geofontis OPF15T

    SciTech Connect (OSTI)

    Elkins, James G [ORNL; Hamilton-Brehm, Scott [ORNL; Walston Davenport, Karen [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Meincke, Linda [Los Alamos National Laboratory (LANL); Detter, J C [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Cottingham, Robert W [ORNL

    2013-01-01

    Thermodesulfobacterium geofontis OPF15T was isolated from Obsidian Pool, Yellowstone National Park and grows optimally at 83 oC. The OPF15T genome was finished at the Joint Genome Institute and the 1.6 Mb sequence has been annotated and deposited for future genomic studies aimed at understanding microbial processes and nutrient cycles in high-temperature environments.

  9. Genomic Advances to Improve Biomass for Biofuels (LBNL Science at the Theater)

    ScienceCinema (OSTI)

    Rokhsar, Daniel

    2011-04-28

    Lawrence Berkeley National Lab bioscientist Daniel Rokhsar discusses genomic advances to improve biomass for biofuels. He presented his talk Feb. 11, 2008 in Berkeley, California as part of Berkeley Lab's community lecture series. Rokhsar works with the U.S. Department of Energy's Joint Genome Institute and Berkeley Lab's Genomics Division.

  10. Geoengineering the Earth's Climate

    ScienceCinema (OSTI)

    Google Tech Talks

    2009-09-01

    Emergency preparedness is generally considered to be a good thing, yet there is no plan regarding what we might do should we be faced with a climate emergency. Such an emergency could take the form of a rapid shift in precipitation patterns, a collapse of the great ice sheets, the imminent triggering of strong climate system feedbacks, or perhaps the loss of valuable ecosystems. Over the past decade, we have used climate models to investigate the potential to reverse some of the effects of greenhouse gases in the atmosphere by deflecting some incoming sunlight back to space. This would probably be most cost-effectively achieved with the placement of small particles in or above the stratosphere. Our model simulations indicate that such geoengineering approaches could potentially bring our climate closer to the state is was in prior to the introduction of greenhouse gases. This talk will present much of what is known about such geoengineering approaches, and raise a range of issues likely to stimulate lively discussion. Speaker: Ken Caldeira Ken Caldeira is a scientist at the Carnegie Institution Department of Global Ecology and a Professor (by courtesy) at the Stanford University Department of Environmental and Earth System Sciences. Previously, he worked for 12 years in the Energy and Environment Directorate at the Lawrence Livermore National Laboratory (Department of Energy). His research interests include the numerical simulation of Earth's climate, carbon, and biogeochemistry; ocean acidification; climate emergency response systems; evaluating approaches to supplying environmentally-friendly energy services; ocean carbon sequestration; long-term evolution of climate and geochemical cycles; and marine biogeochemical cycles. Caldeira has a B.A. in Philosophy from Rutgers College and an M.S. and Ph.D. in Atmospheric Sciences from New York University.

  11. Climate Change 2007: Mitigation of Climate Change.

    E-Print Network [OSTI]

    Schiavon, Stefano; Zecchin, Roberto

    2007-01-01

    2007: Mitigation of Climate Change. Full report. WorkingIntergovernmental Panel on Climate Change www.webcda.it LaIntergovernmental Panel on Climate Change”. Il Rapporto

  12. 10. international mouse genome conference

    SciTech Connect (OSTI)

    Meisler, M.H.

    1996-12-31

    Ten years after hosting the First International Mammalian Genome Conference in Paris in 1986, Dr. Jean-Louis Guenet presided over the Tenth Conference at the Pasteur Institute, October 7--10, 1996. The 1986 conference was a satellite to the Human Gene Mapping Workshop and had approximately 50 attendees. The 1996 meeting was attended by 300 scientists from around the world. In the interim, the number of mapped loci in the mouse increased from 1,000 to over 20,000. This report contains a listing of the program and its participants, and two articles that review the meeting and the role of the laboratory mouse in the Human Genome project. More than 200 papers were presented at the conference covering the following topics: International mouse chromosome committee meetings; Mutant generation and identification; Physical and genetic maps; New technology and resources; Chromatin structure and gene regulation; Rate and hamster genetic maps; Informatics and databases; and Quantitative trait analysis.

  13. Climate Research Ocean Climate Sta1ons

    E-Print Network [OSTI]

    Climate Research Ocean Climate Sta1ons PI: Meghan Cronin Co Lab Review 2 hClimate Sta-ons are moored buoys #12;Ocean Climate Sta1ons 2014 PMEL Lab Review 5 Contribu-ng to NOAA's Goals

  14. Genomics and the human genome project: implications for psychiatry

    E-Print Network [OSTI]

    Kelsoe, J R

    2004-01-01

    and psychosis: a convergent functional genomics approach.Physiology & Genomics, 4, 83–91. O LIPHANT , A. , B ARKER ,2004), 16(4), 294–300 Genomics and the Human Genome Project:

  15. Defining Genome Project Standards in a New Era of Sequencing (GSC8 Meeting)

    ScienceCinema (OSTI)

    Chain, Patrick [DOE JGI

    2011-04-28

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego.

  16. Metagenomic and Metaproteomic Analyses of Symbioses between Bacteria and Gutless Marine Worms (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Dubilier, Nicole

    2014-03-19

    Nicole Dubilier of the Max Planck Institute speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  17. Will Climate Change Mathematics (?) Christopher K.R.T. Jones

    E-Print Network [OSTI]

    Will Climate Change Mathematics (?) Christopher K.R.T. Jones Warwick Mathematics Institute to climate change facing us are enormous and we will almost certainly have to harness all of our scienti complex calculations and predictions as are undertaken by the Intergovernmental Panel on Climate Change

  18. Changing Climates 

    E-Print Network [OSTI]

    Wythe, Kathy

    2008-01-01

    Resources Institute, an entity of Texas A&M AgriLife, and Environmental Sciences Institute of The University of Texas at Austin. Co-sponsors include Guadalupe ? Blanco River Authority, Lower Colorado River Authority, Magnolia Charitable Trust...

  19. Long-Term Climate Commitments Projected with ClimateCarbon Cycle Models G.-K. PLATTNER,a,n

    E-Print Network [OSTI]

    Stocker, Thomas

    Long-Term Climate Commitments Projected with Climate­Carbon Cycle Models G.-K. PLATTNER,a,n R IAC, ETH Zürich, Zürich, Switzerland c Potsdam Institute for Climate Impact Research, Potsdam, Germany of Earth and Ocean Sciences, University of Victoria, Victoria, British Columbia, Canada h The Open

  20. Genomic Speciation and Adaptation in Aquilegia (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Hodges, Scott [University of California, Santa Barbara] [University of California, Santa Barbara

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Scott Hodges of the University of California, Santa Barbara gives a presentation on "Genomic Speciation and Adaptation in Aquilegia" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  1. Genomics of Extinct and Endangered Species (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Shuster, Stephen [Penn State University] [Penn State University

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Stephen Shuster of Penn State University gives a presentation on "Genomics of Extinct and Endangered Species" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  2. Genomic Speciation and Adaptation in Aquilegia (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Hodges, Scott [University of California, Santa Barbara

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Scott Hodges of the University of California, Santa Barbara gives a presentation on "Genomic Speciation and Adaptation in Aquilegia" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  3. Genomics of Extinct and Endangered Species (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Shuster, Stephen [Penn State University

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Stephen Shuster of Penn State University gives a presentation on "Genomics of Extinct and Endangered Species" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  4. Comparative genomic workflow

    E-Print Network [OSTI]

    Rajapakse, Jagath

    his article describes a workflow for identifying conserved patterns in noncoding regions of vertebrate genomes, with an intention of investigating possible functions of the conserved regions. The annotations of genomes are ...

  5. The Data Center (DC) Genome project is a collaborative effort with Microsoft Research

    E-Print Network [OSTI]

    Amir, Yair

    DC Genome The Data Center (DC) Genome project is a collaborative effort with Microsoft Research the efficiency of data center operations and thus minimize their environmental impact. Data center energy about carbon footprints and climate change. Lack of visibility into the data center's operating

  6. Climate Systems and Climate Change Is Climate Change Real?

    E-Print Network [OSTI]

    Pan, Feifei

    Chapter 10 Climate Systems and Climate Change #12;Is Climate Change Real? 1980 1898 2005 2003 #12;Arctic Sea Ice Changes #12;Observed Global Surface Air Temperature #12;! Current climate: weather station data, remote sensing data, numerical modeling using General Circulation Models (GCM) ! Past climate

  7. Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System

    E-Print Network [OSTI]

    Deelman, Ewa

    Laboratory 2 Computation Institute, Argonne National Laboratory & University of Chicago 3 Center for Climatic hindered the efforts of the climate community to understand climate variability and climate change fromAutomating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual

  8. Climate related sea-level variations over the past two millennia

    E-Print Network [OSTI]

    Thompson, Anne

    ; b School of Forestry and Environmental Studies and Yale Climate and Energy Institute, YaleClimate related sea-level variations over the past two millennia Andrew C. Kempa,b , Benjamin P, Aalto, Finland; and f Potsdam Institute for Climate Impact Research, Telegrafenberg A62, 14473 Potsdam

  9. The human genome project

    SciTech Connect (OSTI)

    Yager, T.D.; Zewert, T.E.; Hood, L.E. )

    1994-04-01

    The Human Genome Project (HGP) is a coordinated worldwide effort to precisely map the human genome and the genomes of selected model organisms. The first explicit proposal for this project dates from 1985 although its foundations (both conceptual and technological) can be traced back many years in genetics, molecular biology, and biotechnology. The HGP has matured rapidly and is producing results of great significance.

  10. Advances in Whole Genome

    E-Print Network [OSTI]

    Ciocan-Fontanine, Ionut

    Advances in Whole Genome Sequencing IMA Public Lecture: Tuesday, May 6, 2003, 7:30 p.m. Moos Tower sequenced genome, the virus Lambda at 50,000 nucleotides, was sequenced via the shotgun method by Sanger that this approach could not be applied to genomes over 100,000 nucleotides long, so a long period followed where

  11. A Right to Enjoy Culture in Face of Climate Change: Implications for “Climate Migrants”

    E-Print Network [OSTI]

    Wewerinke, Margaretha

    sustainability while allowing for global economic development. This includes strategies for carbon emissions reduction, sequestration of carbon in vegetation and improved resilience of the built environment, economies and social institutions to climate impacts...

  12. Improved climate simulation by MIROC5:2 Mean states, variability, and climate sensitivity3

    E-Print Network [OSTI]

    Watanabe, Masahiro

    1 Improved climate simulation by MIROC5:2 Mean states, variability, and climate sensitivity3 4: Atmosphere and Ocean Research Institute* , The University of Tokyo, 2: Japan13 Marine Science and Technology of Industrial Science, The University of15 Tokyo, 6: Tokyo University of Marine Science and Technology16 17

  13. Sandia Energy - Arctic Climate Measurements

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Arctic Climate Measurements Home Climate & Earth Systems Climate Measurement & Modeling Arctic Climate Measurements Arctic Climate Measurementscwdd2015-05-08T01:51:20+00:00 A...

  14. Review: Global Climate Change

    E-Print Network [OSTI]

    Smith, Jennifer

    2013-01-01

    introduction to global climate change, the greenhouseReview: Global Climate Change: A Primer By Orrin H PilkeyPilkey, Keith C. Global Climate Change: a primer. Durham,

  15. Apportioning Climate Change Costs

    E-Print Network [OSTI]

    Farber, Daniel A.

    2008-01-01

    Apportioning Climate Change Costs Daniel A. Farber* I. II.ON CLIMATE CHANGE FOUR QUESTIONS ABOUTof how to respond to climate change. Most public attention

  16. Climate Engineering Responses to Climate Emergencies

    E-Print Network [OSTI]

    Battisti, David

    Novim Climate Engineering Responses to Climate Emergencies Jason J. Blackstock David S. Battisti Santa Barbara, California #12;Climate Engineering Responses to Climate Emergencies This report should, A. A. N. Patrinos, D. P. Schrag, R. H. Socolow and S. E. Koonin, Climate Engineering Responses

  17. CLIMATE AND CLIMATE CHANGE CERTAINTIES AND UNCERTAINTIES

    E-Print Network [OSTI]

    Schwartz, Stephen E.

    CLIMATE AND CLIMATE CHANGE CERTAINTIES AND UNCERTAINTIES Stephen E. Schwartz http://www.ecd.bnl.gov/steve/schwartz.html December 4, 2001 Updated, March 4, 2002 #12;OUTLINE · Overview of the Earth climate system · Increased concentrations of "greenhouse gases" · Radiative forcing of climate change · Climate system response

  18. Connecting Genomic Alterations to Cancer Biology with Proteomics: The NCI Clinical Proteomic Tumor Analysis Consortium

    SciTech Connect (OSTI)

    Ellis, Matthew; Gillette, Michael; Carr, Steven A.; Paulovich, Amanda G.; Smith, Richard D.; Rodland, Karin D.; Townsend, Reid; Kinsinger, Christopher; Mesri, Mehdi; Rodriguez, Henry; Liebler, Daniel

    2013-10-03

    The National Cancer Institute (NCI) Clinical Proteomic Tumor Analysis Consortium is applying the latest generation of proteomic technologies to genomically annotated tumors from The Cancer Genome Atlas (TCGA) program, a joint initiative of the NCI and the National Human Genome Research Institute. By providing a fully integrated accounting of DNA, RNA, and protein abnormalities in individual tumors, these datasets will illuminate the complex relationship between genomic abnormalities and cancer phenotypes, thus producing biologic insights as well as a wave of novel candidate biomarkers and therapeutic targets amenable to verifi cation using targeted mass spectrometry methods.

  19. Dynamic Genomes of Eukaryotes and the Maintenance of Genomic Integrity

    E-Print Network [OSTI]

    Katz, Laura

    Dynamic Genomes of Eukaryotes and the Maintenance of Genomic Integrity Eukaryotes specify a genome to be inherited stably, enabling dynamic rearrangements and amplifications of other genomic elements Laura Wegener Parfrey and Laura A. Katz M any biologists assume that eu- karyotic genomes are transmit- ted stably

  20. "Managing Department Climate Change"

    E-Print Network [OSTI]

    Sheridan, Jennifer

    "Managing Department Climate Change" #12;Presenters · Ronda Callister Professor, Department Department Climate? · Assesment is essential for determining strategies for initiating change · In a research climate · Each panelist will describe an intervention designed to improve department climate ­ Ronda

  1. Phylogenetic Inference Using Whole Genomes

    E-Print Network [OSTI]

    Phylogenetic Inference Using Whole Genomes Bruce Rannala1 and Ziheng Yang2 1 Genome Center.yang@ucl.ac.uk Annu. Rev. Genomics Hum. Genet. 2008. 9:217­31 First published online as a Review in Advance on June 3, 2008 The Annual Review of Genomics and Human Genetics is online at genom.annualreviews.org This article

  2. Climate Change and Extinctions

    E-Print Network [OSTI]

    Sinervo, Barry

    2013-01-01

    Lectures presents: Climate Change and Extinctions Happening2013. He will present a climate change extinction model that

  3. Webinar: Materials Genome Initative

    Broader source: Energy.gov [DOE]

    Audio recording and text version of the Fuel Cell Technologies Office webinar titled "Materials Genome Initiative," originally presented on December 2, 2014.

  4. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    and structural genomics, and applications for such work cover diverse fields such as energy, agriculture, and environmental cleanup. Get Expertise Babetta Marrone Biofuels...

  5. Genomics Division Home

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    to the most primitive soil microbe represent a watershed opportunity for biology. The Genomics Division is taking advantage of this wealth of new information. While it is well...

  6. Genome Science/Technologies

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    primary focus is to develop technologies to obtain near complete genomes from single cells for the purposes of improved taxonomic identification and determining metabolic...

  7. Complete genome sequence of Ferroglobus placidus AEDII12DO

    SciTech Connect (OSTI)

    Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Risso, Carla [University of Massachusetts, Amherst; Holmes, Dawn [University of Massachusetts, Amherst; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Thomas S [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Lovley, Derek [University of Massachusetts, Amherst; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

    2011-01-01

    Ferroglobus placidus belongs to the order Archaeoglobales within the archaeal phylum Euryar- chaeota. Strain AEDII12DO is the type strain of the species and was isolated from a shallow marine hydrothermal system at Vulcano, Italy. It is a hyperthermophilic, anaerobic chemoli- thoautotroph, but it can also use a variety of aromatic compounds as electron donors. Here we describe the features of this organism together with the complete genome sequence and anno- tation. The 2,196,266 bp genome with its 2,567 protein-coding and 55 RNA genes was se- quenced as part of a DOE Joint Genome Institute Laboratory Sequencing Program (LSP) project.

  8. Nicole Gurtler Genomics and Medicine

    E-Print Network [OSTI]

    Brutlag, Doug

    Gurtler 1 Nicole Gurtler Genomics and Medicine Final Paper Genomics and Multiple Sclerosis The recent breakthroughs in genomics have contributed greatly to the advancement of multiple sclerosis than previously maintenance-oriented treatments. What is Multiple Sclerosis? "Multiple sclerosis (MS

  9. Enhancer Identification through Comparative Genomics

    E-Print Network [OSTI]

    Visel, Axel; Bristow, James; Pennacchio, Len A.

    2006-01-01

    through Comparative Genomics Axel Visel, James Bristow andWalnut Creek, CA 94598 USA. Genomics Division, MS 84-171,Len A. Pennacchio, Genomics Division, One Cyclotron Road, MS

  10. Ginny Scholtes Genomics and Medicine

    E-Print Network [OSTI]

    Brutlag, Doug

    Ginny Scholtes Genomics and Medicine Professor Douglas Brutlag December 2, 2010 How Hard Could It Be? The Integration of Personal Genomics into Medical Practice Personal genomics carries incredible potential to revolutionize the way

  11. Uncertainty in climate science and climate policy

    E-Print Network [OSTI]

    Uncertainty in climate science and climate policy Jonathan Rougier University of Bristol, UK Michel1.tex. 1 Introduction This essay, written by a statistician and a climate scientist, describes our view of the gap that exists between current practice in mainstream climate science, and the practical

  12. Use of Climate Data in Climate Research

    E-Print Network [OSTI]

    von Storch, Hans

    Use of Climate Data in Climate Research A Random Walk Through the MPI Hans von Storch Max and Technical Committee of the Global Climate Observing System in Hamburg, Germany September 19 - 22, 1994 #12;For which- Purposes do we Use 0bserved Data · Climate modelling - Design of parameterisations

  13. RELATING CLIMATE FORCINGS AND CLIMATE RESPONSE

    E-Print Network [OSTI]

    Schwartz, Stephen E.

    RELATING CLIMATE FORCINGS AND CLIMATE RESPONSE Stephen E. Schwartz Upton NY USA Bern, Switzerland change are tightly correlated. Forcing by GHGs only leads to extremely low climate sensitivity, well to rapid changes in forcings by stratospheric volcanic aerosols. Climate sensitivity is quite low, probably

  14. Climate Summary Working toward Climate Resilience

    E-Print Network [OSTI]

    Walter, M.Todd

    1 Climate Summary Working toward Climate Resilience A Summary Prepared for the Town of Germantown and decision-making as requested by the Town of Germantown. It identifies historic climate trends and introduces future projections and strategies to address the climate hazards most likely to affect Hudson

  15. CLIMATE VARIABILITY, CLIMATE CHANGE, AND WESTERN

    E-Print Network [OSTI]

    Keeton, William S.

    CHAPTER 13 CLIMATE VARIABILITY, CLIMATE CHANGE, AND WESTERN WILDFIRE WITH IMPLICATIONS FOR THE URBAN­WILDLAND INTERFACE William S. Keeton, Philip W. Mote and Jerry F. Franklin ABSTRACT Climate change hazards by the warmer, drier summers projected for much of the western U.S. by climate models would

  16. CLIMATE AND CLIMATE CHANGE SCIENTIFIC BACKGROUND

    E-Print Network [OSTI]

    Schwartz, Stephen E.

    CLIMATE AND CLIMATE CHANGE SCIENTIFIC BACKGROUND FOR INFORMED DECISION-MAKING Stephen E. Schwartz Climate Research Unit, East Anglia UK #12;INDICATIONS OF SYSTEMATIC WARMING IN RECENT YEARS The 1990s were call the anthropocene climate regime. Over the 20th century, human population quadrupled and energy

  17. Climate Change Action Pack Climate & Habitats

    E-Print Network [OSTI]

    Gunawardena, Arunika

    Climate Change Action Pack Climate & Habitats B A C K G R O U DN C H E C K ! Habitat, Food, Water. Disease,predation,pollution, accidents and climatic conditions are among other limiting factors which can affect an animal's ability to meet its needs. This section will look further into the impact of Climate

  18. Evolutionary Genomics of Salmonella enterica Subspecies

    E-Print Network [OSTI]

    2013-01-01

    M. 2013. Evolutionary genomics of Salmonella entericaEvolutionary Genomics of Salmonella enterica Subspecies

  19. Evolutionary Genomics of Salmonella enterica Subspecies

    E-Print Network [OSTI]

    2013-01-01

    Evolutionary genomics of Salmonella enterica subspecies.Evolutionary Genomics of Salmonella enterica Subspecies

  20. SciTech Connect: genomics

    Office of Scientific and Technical Information (OSTI)

    genomics Find + Advanced Search Term Search Semantic Search Advanced Search All Fields: genomics Semantic Semantic Term Title: Full Text: Bibliographic Data: Creator Author:...

  1. Genome Project Standards in a New Era of Sequencing

    SciTech Connect (OSTI)

    GSC Consortia; HMP Jumpstart Consortia; Chain, P. S. G.; Grafham, D. V.; Fulton, R. S.; FitzGerald, M. G.; Hostetler, J.; Muzny, D.; Detter, J. C.; Ali, J.; Birren, B.; Bruce, D. C.; Buhay, C.; Cole, J. R.; Ding, Y.; Dugan, S.; Field, D.; Garrity, G. M.; Gibbs, R.; Graves, T.; Han, C. S.; Harrison, S. H.; Highlander, S.; Hugenholtz, P.; Khouri, H. M.; Kodira, C. D.; Kolker, E.; Kyrpides, N. C.; Lang, D.; Lapidus, A.; Malfatti, S. A.; Markowitz, V.; Metha, T.; Nelson, K. E.; Parkhill, J.; Pitluck, S.; Qin, X.; Read, T. D.; Schmutz, J.; Sozhamannan, S.; Strausberg, R.; Sutton, G.; Thomson, N. R.; Tiedje, J. M.; Weinstock, G.; Wollam, A.

    2009-06-01

    For over a decade, genome 43 sequences have adhered to only two standards that are relied on for purposes of sequence analysis by interested third parties (1, 2). However, ongoing developments in revolutionary sequencing technologies have resulted in a redefinition of traditional whole genome sequencing that requires a careful reevaluation of such standards. With commercially available 454 pyrosequencing (followed by Illumina, SOLiD, and now Helicos), there has been an explosion of genomes sequenced under the moniker 'draft', however these can be very poor quality genomes (due to inherent errors in the sequencing technologies, and the inability of assembly programs to fully address these errors). Further, one can only infer that such draft genomes may be of poor quality by navigating through the databases to find the number and type of reads deposited in sequence trace repositories (and not all genomes have this available), or to identify the number of contigs or genome fragments deposited to the database. The difficulty in assessing the quality of such deposited genomes has created some havoc for genome analysis pipelines and contributed to many wasted hours of (mis)interpretation. These same novel sequencing technologies have also brought an exponential leap in raw sequencing capability, and at greatly reduced prices that have further skewed the time- and cost-ratios of draft data generation versus the painstaking process of improving and finishing a genome. The resulting effect is an ever-widening gap between drafted and finished genomes that only promises to continue (Figure 1), hence there is an urgent need to distinguish good and poor datasets. The sequencing institutes in the authorship, along with the NIH's Human Microbiome Project Jumpstart Consortium (3), strongly believe that a new set of standards is required for genome sequences. The following represents a set of six community-defined categories of genome sequence standards that better reflect the quality of the genome sequence, based on our collective understanding of the different technologies, available assemblers, and the varied efforts to improve upon drafted genomes. Due to the increasingly rapid pace of genomics we avoided the use of rigid numerical thresholds in our definitions to take into account the types of products achieved by any combination of technology, chemistry, assembler, or improvement/finishing process.

  2. Climate Change, Adaptation, and Development

    E-Print Network [OSTI]

    Cole, Daniel H.

    2008-01-01

    Climate Change, Adaptation, and Development Daniel H. Cole*THE COSTS OF CLIMATE CHANGE . ADAPTATIONCONVENTION ON CLIMATE CHANGE . IV. A.

  3. An assessment of health educators' likelihood of adopting genomic competencies for the public health workforce 

    E-Print Network [OSTI]

    Chen, Lei-Shih

    2009-05-15

    , the National Institutes of Health (NIH) announced the completion of the Human Genome Project (HGP). The project represents a milestone in human history, as advanced genomic technologies/information can offer insight into specific diseases and may help.... Certainly, genomics is going to have a profound impact on the public health practice of the future?? 10 Yet in the wake of its completion, the HGP also raised new and non-trivial public health issues. These include, but are not restricted to...

  4. Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies

    E-Print Network [OSTI]

    2013-01-01

    annotation and comparative genomics. Database (Oxford) 2009,et al. : Comparative genomics of the core and accessoryComparative genomics of the core and accessory genomes of 48

  5. Climate Action Plan 2013 Update

    E-Print Network [OSTI]

    Rose, Michael R.

    UC Irvine Climate Action Plan 2013 Update #12;CLIMATE ACTION PLAN - 2013 UPDATE 1 TABLE OF CONTENTS CLIMATE PROTECTION GOALS...............................................................18 OPPORTUNITIES-2050 CLIMATE NEUTRALITY.........................................................29 MEDICALCENTER IMPLEMENTATION

  6. Update on Genomic Studies of Algae Paths toward Algal Genomics

    E-Print Network [OSTI]

    Update on Genomic Studies of Algae Paths toward Algal Genomics Arthur R. Grossman* The Carnegie the expression of genes. In this introductory manuscript, I discuss select algae and how genomics is impacting our understanding of these organisms. Four algae for which near-full genome information has become

  7. Update on Genomic Studies of Algae Paths toward Algal Genomics

    E-Print Network [OSTI]

    Update on Genomic Studies of Algae Paths toward Algal Genomics Arthur R. Grossman* The Carnegie of genomic information that is being used to help researchers understand the gene content of organisms, how the expression of genes. In this introductory manuscript, I discuss select algae and how genomics is impacting

  8. Comparative and Functional Genomics Comp Funct Genom 2003; 4: 3136.

    E-Print Network [OSTI]

    Allen, John F.

    Comparative and Functional Genomics Comp Funct Genom 2003; 4: 31­36. Published online in Wiley and mitochondria contain genomes John F. Allen* Plant Biochemistry, Center for Chemistry and Chemical Engineering that the nucleotide sequences of mitochondrial and chloroplast genomes would provide the answer has proved unfounded

  9. Unraveling the 3D genome: genomics tools for multiscale exploration

    E-Print Network [OSTI]

    Straight, Aaron

    Unraveling the 3D genome: genomics tools for multiscale exploration Viviana I. Risca and William J genome and the roles it may play in regulating transcription. Here we review core methods and new tools-scale chromosomal domains, and discuss the emerging pic- ture of the 3D genome that these tools have revealed. Blind

  10. COMPUTATIONAL GENOMICS: MAPPING, COMPARISON, AND ANNOTATION OF GENOMES

    E-Print Network [OSTI]

    address key issues in the different stages of genome research: planning of a genome sequencing project areas: (1) In relation to the early stages of a genome project, we address physical mapping, and we structure and sequence analysis of orthologous human and mouse genomic regions, and develop ROSETTA

  11. Saint Joseph's University Institute for Environmental Stewardship

    SciTech Connect (OSTI)

    McCann, Michael P; Springer, Clint

    2013-10-15

    Task A: Examination of the physiological, morphological, and reproductive responses of Panicum virgatum (switchgrass) cultivars identified as potential biofuel producing cultivars as well as naturally-occurring varieties of switchgrass to projected changes in climate for the central portion of the United States. This project was a multi-year project set in a field site located at the Konza Prairie Biological Station near Manhattan, KS USA. At the field site we planted switchgrass collected from regions in Kansas, Oklahoma, and Texas. After a year of establishment we implemented a set of two-year water treatments that examined the responses in physiology, growth and development of switchgrass to predicted changes in precipitation amount for the central United States. After this experiment was completed we performed a second set of experiments that examined the responses of switchgrass physiology, growth, and development to changes in precipitation frequency. We also included in this analysis how genome size of individuals influenced their responses to precipitation frequency changes. Generally, we found switchgrass to be unresponsive to realistic predictions of precipitation changes for the Central Plains of the United States. These studies have provided significant insight into how this important grassland species will respond to future climate change from both an ecological and applied biological perspective. Finally, we provided insight into the mechanism through which this species changes in the face of altered water availability by not supporting the hypothesis that the control of switchgrass responses to changes in precipitation is altered by genome size. Task B: Installation of an extensive green roof system on the Science Center at Saint Joseph's University for research, research-training and educational outreach activities. An experimental green roof system was designed and installed by an outside contractor (Roofmeadows) on the roof of the Science Center at Saint Joseph's University. The roof system includes four test plots, each with a different drainage system, instrumentation to monitor storm water retention, roof deck temperature, heat flux into and out of the building, rain fall, wind speed and direction, relative humidity and heat emission from the roof system. The vegetative roof was planted with 26 species of plants, distributed throughout the roof area, to assess species/variety growth and coverage characteristics, both in terms of the different drain layer systems, and in terms of the different exposures along the north to south axis of the building. Analysis of the drain layer performance, in terms of storm water retention, shows that the aggregate (stone) drainage layer system performed the best, with the moisture management mat system second, and the geotextile drain layer and reservoir sheet layer systems coming in last. Plant growth performance analysis is ongoing, but significant differences have been observed in the third growing season ('13) along the north to south axis, with most species doing better towards the northern end of the roof (in terms of percent ground coverage and plant spread and reproduction). Interestingly, plant growth in all four of the test plots was reduced relative to the lower areas of the roof (the lower area was ca. 2 inches lower than the test plots, due to the space needed for sensors under the plots. The lower roof area uses an aggregate drain layer comparable to that in the third test plot), even when accounting for the north to south differences. The reasons for these differences are not clear and studies are underway to examine the impact of wind scour, drainage rates, temperature, and other factors. Task C: Education and community outreach efforts by the IES involving conferences at SJU, presentations by faculty and students off campus, and educational signage. The Institute for Environmental Stewardship hosted three storm water management workshops on the SJU campus in Philadelphia, in collaboration with the Lower Merion Conservancy, a not-for-profit organizati

  12. Towards the Perfect Genome Sequence (Opening Keynote) ( 7th Annual SFAF Meeting, 2012)

    ScienceCinema (OSTI)

    Weinstock, George [Washington University

    2013-03-22

    George Weinstock, associate director at the Genome Institute at Washington University, delivered the opening keynote "Towards the Perfect Genome Sequence" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

  13. The genomic impact of 100 million years of social evolution in seven

    E-Print Network [OSTI]

    Alvarez, Nadir

    The genomic impact of 100 million years of social evolution in seven ant species Ju¨ rgen Gadau1, Switzerland Vital-IT Group, Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, School in terms of both their geographic distribution and species number. The publi- cation of seven ant genomes

  14. Tackling the Triple-Threat Genome of Miscanthus x giganteus (2010 JGI User Meeting)

    ScienceCinema (OSTI)

    Moose, Steve

    2011-04-25

    Steve Moose from the University of Illinois at Urbana-Champaign and the Energy Biosciences Institute on "Tackling the Triple-Threat Genome of Miscanthus x giganteus" on March 25, 2010 at the 5th Annual DOE JGI User Meeting

  15. Climate Update Nolan Doesken

    E-Print Network [OSTI]

    Climate Update Nolan Doesken Colorado Climate Center Presented to Water Availability Task Force precip #12;Mtd ppt #12;Mtd ppt PRISM Climate Group, Oregon State University #12;Climate divisions defined by Dr. Klaus Wolter of NOAA's Climate Diagnostic Center in Boulder, CO #12;#12;Division 1 ­ Grand Lake 1

  16. Climate Change Scoping Plan

    E-Print Network [OSTI]

    Climate Change Scoping Plan a amework for change as approved Prepared by the California AirBackgroundBackgroundBackground ............................................................................................................................................................................................................................................................................................................................................................................................................ 4444 1. Climate Change Policy in California1. Climate Change Policy in California1. Climate Change Policy in California1. Climate Change Policy in California

  17. Climate change action plan

    E-Print Network [OSTI]

    Delivery Climate change action plan 2009-2011 #12;2 | Climate change action plan ©istockphoto.com #12;Climate Change Action Plan Climate change action plan | 3 Contents Overview 4 Preface and Introduction 5 Climate change predictions for Scotland 6 The role of forestry 7 Protecting and managing

  18. Climate Change Scoping Plan

    E-Print Network [OSTI]

    Climate Change Scoping Plan a amework for change Prepared by the California Air Resources BoardBackgroundBackgroundBackground ............................................................................................................................................................................................................................................................................................................................................................................................................ 4444 1. Climate Change Policy in California1. Climate Change Policy in California1. Climate Change Policy in California1. Climate Change Policy in California

  19. Linking local air pollution to global chemistry and climate

    E-Print Network [OSTI]

    Mayer, Monika.; Wang, Chien.; Webster, Mort David.; Prinn, Ronald G.

    We have incorporated a reduced-form urban air chemistry model in MIT's 2D-LO coupled chemistry-climate model. The computationally efficient reduced-form urban model is derived from the California Institute of Technology-Carnegie ...

  20. ITEP Webinar: Climate Change Impacts on Fish and Wildlife

    Broader source: Energy.gov [DOE]

    Attend this Institute for Tribal Environmental Professionals (ITEP) webinar and learn the climate change challenges for fish and wildlife and what can be done to help safeguard fish, wildlife, and plants and the communities and economies that depend on them.

  1. Human choice and climate change. Volume 1: The societal framework

    SciTech Connect (OSTI)

    Rayner, S.; Malone, E.L.

    1997-12-31

    Foreward: Preface; Introduction; Science and decisionmaking; Population and climate change; Human needs and wants; Cultural discourses; Institutional frameworks for political action; and Sponsoring organizations, International Advisory Board, and project participants.

  2. The Center for integrative genomics

    E-Print Network [OSTI]

    Kaessmann, Henrik

    The Center for integrative genomics Report 2005­2006 #12;Presentation Director's message 4 Scientific advisory committee 6 Organigram of the CIG 7 research The structure and function of genomes and their evolution alexandrereymond ­ Genome structure and expression 10 henrikKaessmann ­ Evolutionary genomics 12

  3. Human Genome Program

    SciTech Connect (OSTI)

    Not Available

    1993-01-01

    The DOE Human Genome program has grown tremendously, as shown by the marked increase in the number of genome-funded projects since the last workshop held in 1991. The abstracts in this book describe the genome research of DOE-funded grantees and contractors and invited guests, and all projects are represented at the workshop by posters. The 3-day meeting includes plenary sessions on ethical, legal, and social issues pertaining to the availability of genetic data; sequencing techniques, informatics support; and chromosome and cDNA mapping and sequencing.

  4. University of Heidelberg Institute of Environmental Physics

    E-Print Network [OSTI]

    Roth, Kurt

    % of permafrost soils below 500 m asl ! 10% of permafrost soils above 3000 m asl mostly on Qinghai-Tibet plateau in permafrost soils ·climate warming leads to decomposition ·release of huge amounts of CH4 and CO2 positiveUniversity of Heidelberg Institute of Environmental Physics Physics of Glaciers and Permafrost

  5. Probabilistic Forecast for Twenty-First-Century Climate Based on Uncertainties in Emissions (Without Policy) and Climate Parameters

    E-Print Network [OSTI]

    Jacoby, Henry D.

    The Massachusetts Institute of Technology (MIT) Integrated Global System Model is used to make probabilistic projections of climate change from 1861 to 2100. Since the model’s first projections were published in 2003, ...

  6. Protecting climate with forests.

    E-Print Network [OSTI]

    2008-01-01

    Changing feedbacks in the climate–biosphere system Front.313–32 Bonan G B 2008 Forests and climate change: forcings,feedbacks, and the climate benefits of forests Science

  7. Climate Code Foundation

    E-Print Network [OSTI]

    Barnes, Nick; Jones, David

    2011-07-05

    Climate Code Foundation - who are we? A non-profit organisation founded in August 2010; our goal is to promote the public understanding of climate science, by increasing the visibility and clarity of the software used in climate science...

  8. Climate Data Operators (CDO)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Climate Data Operators (CDO) Climate Data Operators (CDO) Description and Overview CDO is a large tool set for working on climate data. NetCDF 34, GRIB including SZIP compression,...

  9. Roadmap for the Development of a Climate Change Adaptation Plan

    E-Print Network [OSTI]

    Miller, Scott

    Roadmap for the Development of a Climate Change Adaptation Plan Prepared by the Smithsonian Climate of the Smithsonian This document sets out a Roadmap that will guide the Smithsonian Institution (Smithsonian Group to develop this initial roadmap. The Working Group includes representatives of the following

  10. Hidden Breakpoints in Genome Alignments

    E-Print Network [OSTI]

    Spang, Rainer

    in Genome Alignments #12;11 Simulated evolution Hidden Breakpoints in Genome Alignments 400 alignments in Genome Alignments #12;13 Simulated evolution Hidden Breakpoints in Genome Alignments 400 alignments genome Sum-of-Pairs: d(A,B) + d(A,C) + d(B,C) argmin {d(A,M) + d(B,M) + d(C,M)} M A C #12;16 Hidden

  11. Advanced Studies Institute

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Engineering Institute Advanced Studies Institute Contact Institute Director Charles Farrar (505) 663-5330 Email UCSD EI Director Michael Todd (858) 534-5951 Professional Staff...

  12. Genomic and Systems Biology Analyses of Social Behavior or Evolutionary Genomic Analyses of Insect Society: Eat, Drink, and Be Scary (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Robinson, Gene

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gene Robinson of the University of Illinois on "Genomic and Systems Biology Analyses of Social Behavior" at the 6th Annual Genomics of Energy & Environment Meeting on March 23, 2011

  13. Genomic and Systems Biology Analyses of Social Behavior or Evolutionary Genomic Analyses of Insect Society: Eat, Drink, and Be Scary (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Robinson, Gene

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gene Robinson of the University of Illinois on "Genomic and Systems Biology Analyses of Social Behavior" at the 6th Annual Genomics of Energy & Environment Meeting on March 23, 2011

  14. Nucleomorph genomes: structure, function, origin and evolution

    E-Print Network [OSTI]

    Archibald, John

    Nucleomorph genomes: structure, function, origin and evolution John M. Archibald Summary and four genomes--two nuclear genomes, an endosymbiont- derived plastid genome and a mitochondrial genome derived from the host cell. Like mitochondrial and plastid genomes, the genome of the endosymbiont nucleus

  15. Genomic library construction

    DOE Patents [OSTI]

    Church, George M. (Brookline, MA); Zhang, Kun (San Diego, CA)

    2011-07-26

    Compositions and methods for amplifying nucleic acid sequences from a single cell are provided. Compositions and methods for constructing a genomic library from a single cell are also provided.

  16. Genomic definition of species

    SciTech Connect (OSTI)

    Crkvenjakov, R.; Drmanac, R.

    1991-07-01

    The subject of this paper is the definition of species based on the assumption that genome is the fundamental level for the origin and maintenance of biological diversity. For this view to be logically consistent it is necessary to assume the existence and operation of the new law which we call genome law. For this reason the genome law is included in the explanation of species phenomenon presented here even if its precise formulation and elaboration are left for the future. The intellectual underpinnings of this definition can be traced to Goldschmidt. We wish to explore some philosophical aspects of the definition of species in terms of the genome. The point of proposing the definition on these grounds is that any real advance in evolutionary theory has to be correct in both its philosophy and its science.

  17. Climate change cripples forests

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Climate Change Cripples Forests Climate change cripples forests A team of scientists concluded that in the warmer and drier Southwest of the near future, widespread tree mortality...

  18. Climate change cripples forests

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Climate change cripples forests Climate change cripples forests A team of scientists concluded that in the warmer and drier Southwest of the near future, widespread tree mortality...

  19. Chapter 20 Climate

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    in bold and acronyms are defined in Chapter 32, Glossary and Acronyms. Chapter 20 Climate This chapter describes existing climate conditions in the project area, and how the...

  20. FY08 LDRD Final Report Regional Climate

    SciTech Connect (OSTI)

    Bader, D C; Chin, H; Caldwell, P M

    2009-05-19

    An integrated, multi-model capability for regional climate change simulation is needed to perform original analyses to understand and prepare for the impacts of climate change on the time and space scales that are critical to California's future environmental quality and economic prosperity. Our intent was to develop a very high resolution regional simulation capability to address consequences of climate change in California to complement the global modeling capability that is supported by DOE at LLNL and other institutions to inform national and international energy policies. The California state government, through the California Energy Commission (CEC), institutionalized the State's climate change assessment process through its biennial climate change reports. The bases for these reports, however, are global climate change simulations for future scenarios designed to inform international policy negotiations, and are primarily focused on the global to continental scale impacts of increasing emissions of greenhouse gases. These simulations do not meet the needs of California public and private officials who will make major decisions in the next decade that require an understanding of climate change in California for the next thirty to fifty years and its effects on energy use, water utilization, air quality, agriculture and natural ecosystems. With the additional development of regional dynamical climate modeling capability, LLNL will be able to design and execute global simulations specifically for scenarios important to the state, then use those results to drive regional simulations of the impacts of the simulated climate change for regions as small as individual cities or watersheds. Through this project, we systematically studied the strengths and weaknesses of downscaling global model results with a regional mesoscale model to guide others, particularly university researchers, who are using the technique based on models with less complete parameterizations or coarser spatial resolution. Further, LLNL has now built a capability in state-of-the-science mesoscale climate modeling that complements that which it has in global climate simulation, providing potential sponsors with an end-to-end simulation and analysis program.

  1. Phytozome: a Tool for Green Plant Comparative Genomics

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Phytozome is a joint project of the Department of Energy's Joint Genome Institute and the Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. Clusters of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These clusters allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release v4.0, Phytozome provides access to nine sequenced and annotated green plant genomes, eight of which have been clustered into gene families at six evolutionarily significant nodes. Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are hyper-linked and searchable. [Copied from the Overview at http://www.phytozome.net/Phytozome_info.php

  2. Climatic Data Center Climatic Data Center

    E-Print Network [OSTI]

    NOAA's ational Climatic Data Center NOAA's ational Climatic Data Center 2008 Annual Report 2008NerS 12-16 DAtA ceNter iNFrAStrUctUre 16-20 USer eNGAGemeNt 21-24 eDUcAtioN/oUtreAch/WorKShoPS 26-31 em) National Climatic Data Center (NCDC) served the Nation as an authoritative resource for climate information

  3. Global Climate Change Impacts:Global Climate Change Impacts: Implications for Climate EngineeringImplications for Climate Engineering

    E-Print Network [OSTI]

    Polz, Martin

    Global Climate Change Impacts:Global Climate Change Impacts: Implications for Climate EngineeringImplications for Climate Engineering Thomas R. Karl Lead, NOAA climate services Director, NOAA National Climatic Data Center Global Climate Change Impacts in the United States October 29, 2009 #12;2Global Climate Change

  4. Genome Engineering with TAL Effector Nucleases

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genome Engineering with TAL Effector Nucleases Genome Engineering with TAL Effector Nucleases Print Tuesday, 24 April 2012 09:48 Genome engineering (GE), an emerging discipline in...

  5. Fueling the Future with Fungal Genomics

    E-Print Network [OSTI]

    Grigoriev, Igor V.

    2011-01-01

    JW. 2010. China's fungal genomics initiative: a whitepaper.and Saccharomycotina. BMC Genomics. 8, 325. Bailly J,Harnessing ectomycorrhizal genomics for ecological insights.

  6. VISTA - computational tools for comparative genomics

    E-Print Network [OSTI]

    Frazer, Kelly A.; Pachter, Lior; Poliakov, Alexander; Rubin, Edward M.; Dubchak, Inna

    2004-01-01

    tools for comparative genomics Kelly A. Frazer 1 , LiorBerkeley, CA, 94720 Genomics Division, Lawrence Berkeleymultiple comparative genomics tools and provides users with

  7. Bioinformatics and Genomics Degree Requirements Booklet

    E-Print Network [OSTI]

    dePamphilis, Claude

    Bioinformatics and Genomics Degree Requirements Booklet Fall 2011 #12;- -2 Contents Course Bioinformatics and Genomics Curriculum ------------------------------------------------------ 8 General--------------------------------------------------------------------- 14 #12;- -3 Bioinformatics and Genomics Option (BG

  8. Bioinformatics and Genomics Degree Requirements Booklet

    E-Print Network [OSTI]

    dePamphilis, Claude

    Bioinformatics and Genomics Degree Requirements Booklet Fall 2010 #12;Contents Course Requirements Bioinformatics and Genomics Curriculum -------------------------------------------------------8 General #12;Bioinformatics and Genomics Option (BG

  9. You are invited to the 8th Annual Africa Institute of South Africa's (AISA) Young Graduates and Scholars Conference

    E-Print Network [OSTI]

    Wagner, Stephan

    are from institutions, organisations and universities in Nigeria, Germany, Zimbabwe, Japan, Tanzania focus areas are: Climate change, energy and water supply security, science and technology, international

  10. IMPACT OF CLIMATE CHANGE ON GROUNDWATER RESOURCES R. D. Singh & C. P. Kumar

    E-Print Network [OSTI]

    Kumar, C.P.

    IMPACT OF CLIMATE CHANGE ON GROUNDWATER RESOURCES R. D. Singh & C. P. Kumar National Institute of Hydrology Roorkee ­ 247667 (Uttarakhand) Abstract Climate change poses uncertainties to the supply and management of water resources. The Intergovernmental Panel on Climate Change (IPCC) estimates that the global

  11. International Finance and Climate Change

    E-Print Network [OSTI]

    Zhang, Junshan

    International Finance and Climate Change Thursday, October 17, 2013 Breakfast ­ 8:30 a Principal Climate Change Specialist, Climate Business Group at International Finance Corporation, World Bank Group Vladimir Stenek Senior Climate Change Specialist, Climate Business Department of the International

  12. Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b

    SciTech Connect (OSTI)

    Vishnivetskaya, T. [University of Tennessee, Knoxville (UTK); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Thomas S [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Kathariou, Sophia [North Carolina State University; Ramaley, Robert F. [University of Nebraska Medical Center; Rodrigues, Debora F. [University of Houston, Houston; Hendrix, Christie [Yellowstone National Park; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; Tiedje, James M. [Michigan State University, East Lansing

    2011-01-01

    Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physico-chemical gradient. This genome was sequenced to be a comparative resource for study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy's (DOE) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

  13. Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b

    SciTech Connect (OSTI)

    Vishnivetskaya, T. [University of Tennessee, Knoxville (UTK); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L [ORNL; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Tom [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Kathariou, Sophia [North Carolina State University; Ramaley, Robert F. [University of Nebraska Medical Center; Rodrigues, Debora F. [University of Houston, Houston; Hendrix, Christie [Yellowstone National Park; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; Tiedje, James M. [Michigan State University, East Lansing

    2011-01-01

    Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physicochemical gradient. This genome was sequenced to be a comparative resource for the study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy s (DOE s) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

  14. Global effects of soil and climate on leaf photosynthetic traits and rates

    E-Print Network [OSTI]

    Thomas, David D.

    , Australia, 2 AXA Chair of Biosphere and Climate Impacts, Grand Challenges in Ecosystems and the Environment and Grantham Institute ­ Climate Change and the Environment, Department of Life Sciences, Imperial College for the Environment, University of Western Sydney, Penrith, NSW 2751, Australia, 9 Institute of Agricultural

  15. Human choice and climate change. Four volume set

    SciTech Connect (OSTI)

    Rayner, S.; Malone, E.L.

    1997-12-31

    The four-volume set assesses social science research relevant to global climate change from a wide-ranging interdisciplinary perspective. Taking human choice within social institutions as the starting point, noted researchers examine climate change issues in the context of societal issues such as population and consumption; cultural, institutional, and economic arrangements for human well-being; and the social processes by which decisions are made from local to global levels. This four-volume assessment is intended to complement the work of the intergovernmental Panel on Climate Change.

  16. Haskell Indian Nations University Roundtable: Increased Productions of Traditional and Other Foods in an Era of Abrupt Climate Change

    Office of Energy Efficiency and Renewable Energy (EERE)

    Hosted by the Haskell Indian University International Institute for Indigenous Resource Management and Indigenous Peoples Climate Change Working Group, this roundtable discussion will identify and...

  17. Climatic Change An Interdisciplinary,

    E-Print Network [OSTI]

    Reale, Marco

    1 23 Climatic Change An Interdisciplinary, International Journal Devoted to the Description, Causes and Implications of Climatic Change ISSN 0165-0009 Volume 107 Combined 3-4 Climatic Change (2011) 107:247-265 DOI available until 12 months after publication. #12;Climatic Change (2011) 107:247­265 DOI 10.1007/s10584

  18. CLIMATE PRODUCTS Basic Climatology

    E-Print Network [OSTI]

    CLIMATE PRODUCTS Basic Climatology Colorado Climate Center Funding provided by NOAA Sectoral the computer or a telephone system Data are collected by the National Climatic Data Center (NCDC), where) The original observations relate to WEATHER, not CLIMATE. But if we look at this information over a much longer

  19. Climate Science Andreas Schmittner

    E-Print Network [OSTI]

    Schmittner, Andreas

    Climate Science Andreas Schmittner Associate Professor College of Earth, Ocean, and Atmospheric Sciences Oregon State University Climate Change: A Workshop for Oregon Educators, Aug. 11, 2015 #12;Outline Past Present Future #12;Past Paleoclimate · How can we reconstruct past climate? · How did climate

  20. Climate Change and Transportation

    E-Print Network [OSTI]

    Minnesota, University of

    1 Climate Change and Transportation Addressing Climate Change in the Absence of Federal Guidelines;6 WSDOT Efforts · Climate Change Team · Project Level GHG Approach · Planning Level GHG Approach · Alternative Fuels Corridor · Recent legislation and research #12;7 WSDOT Efforts: Climate Change Team

  1. Department of Energy Joint Genome Institute, Walnut Creek, CA...

    Office of Scientific and Technical Information (OSTI)

    plant roots is a ubiquitous mutualism that plays key roles in plant nutrition, soil health, and carbon cycling. The symbiosis evolved repeatedly and independently as multiple...

  2. Critical Materials Institute uses the Materials Genome approach to

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would like submit theCovalent Bonding in Actinide SandwichCray era Craycourse-inventory

  3. Final Technical Report of Institute for Environmental Genomics of

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield MunicipalTechnical Report:Speeding accessby aLED Street Lighting FINAL TECHNICALNumericalFinal

  4. 2013 Progress Report -- DOE Joint Genome Institute (Program Document) |

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield Municipal GasAdministrationTechnicalTechnicalScience.gov App Findin

  5. U.S. Department of Energy Joint Genome Institute

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield MunicipalTechnicalInformation FederatedInformationTITLE:Connectsubchitted manuscript

  6. Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World

    Energy Savers [EERE]

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on DeliciousMathematicsEnergyInterestedReplacement-2-A WholesaleRetrofitElectrical Equipment

  7. Introduction to Using NERSC for the Joint Genome Institute

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformation CurrentHenryInhibitingInteractivePGAS and Hybrid IntroScientific I/O Show All

  8. Comparative and Functional Genomics Comp Funct Genom 2003; 4: 239245.

    E-Print Network [OSTI]

    Wurtele, Eve Syrkin

    Biology, Iowa State University, Ames IA 50011, USA 2Bioinformatics and Computational Biology Program, Iowa Encyclopedia of Genes and Genomes [9] (KEGG) (http://www.genome.ad.jp/ kegg) provide molecular networks based

  9. Computational genomics : mapping, comparison, and annotation of genomes

    E-Print Network [OSTI]

    Batzoglou, Serafim

    2000-01-01

    The field of genomics provides many challenges to computer scientists and mathematicians. The area of computational genomics has been expanding recently, and the timely application of computer science in this field is ...

  10. Relative Roles of Changes in CO2 and Climate to Equilibrium Responses of Net Primary Production and Carbon Storage of the Terrestrial Biosphere

    E-Print Network [OSTI]

    -GFDL) and a 2-dimensional climate model (Land-Ocean climate model at Massachusetts Institute of TechnologyRelative Roles of Changes in CO2 and Climate to Equilibrium Responses of Net Primary Production Institute of Technology, Cambridge, MA 02139, USA 3 National Biological Service, Alaska Cooperative Fish

  11. Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux

    E-Print Network [OSTI]

    Hammerton, James

    Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux Erin A. Lynch1 , Morgan G. Eisen1,3,12,13 *, Marc T. Facciotti1,3,14 * 1 Microbiology Graduate Group, University of California We report the sequencing of seven genomes from two haloarchaeal genera, Haloferax and Haloarcula

  12. Mammalian comparative genomics and epigenomics

    E-Print Network [OSTI]

    Mikkelsen, Tarjei Sigurd, 1978-

    2009-01-01

    The human genome sequence can be thought of as an instruction manual for our species, written and rewritten over more than a billion of years of evolution. Taking a complete inventory of our genome, dissecting its genes ...

  13. Next-generation nematode genomes 

    E-Print Network [OSTI]

    Kumar, Sujai

    2013-06-29

    The first metazoan to be sequenced was a nematode (Caenorhabditis elegans), and understanding the genome of this model organism has led to many insights about all animals. Although eleven nematode genomes have been ...

  14. Tribal Climate Change Webinars: BIA's Climate Change Competitive...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    climate adaptation, ocean and coastal planning, and youth internships. SpeakersSean Hart, BIA Climate Change Coordinator, andRachael Novak, BIA Climate Science Coordinator,...

  15. Formulating Climate Change Scenarios to Inform Climate - Resilient...

    Open Energy Info (EERE)

    Formulating Climate Change Scenarios to Inform Climate - Resilient Development Strategies Jump to: navigation, search Tool Summary LAUNCH TOOL Name: Formulating Climate Change...

  16. Climate Action Champions: Sonoma County Regional Climate Protection...

    Energy Savers [EERE]

    Sonoma County Regional Climate Protection Authority, CA Climate Action Champions: Sonoma County Regional Climate Protection Authority, CA In 2005, nine cities and the County of...

  17. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformation Current HABFESOpportunities NuclearlongGeneral Tables The GeneralGenomeGenomics

  18. Comparative Genomics of Mycobacterium Tuberculosis

    E-Print Network [OSTI]

    Brutlag, Doug

    Comparative Genomics of Mycobacterium Tuberculosis #12;My Questions · What is TB ­ What in the literature. · Emphasize that genomics techniques are not limited to hereditary diseases. #12;Methods · Deciphering the biology of Mycobacterium Tuberculosis from the complete genome sequence, Stuart Cole et al

  19. SHORT REVIEW Butterfly genomics eclosing

    E-Print Network [OSTI]

    Beldade, Patrícia

    SHORT REVIEW Butterfly genomics eclosing P Beldade1 , WO McMillan2 and A Papanicolaou3 1 Section to an explosion of genomic data and the emergence of new research avenues. Evolutionary and ecological functional genomics, with its focus on the genes that affect ecological success and adaptation in natural populations

  20. TOKYO INSTITUTE OF TECHNOLOGY

    E-Print Network [OSTI]

    TOKYO INSTITUTE OF TECHNOLOGY 2005 TOKYO INSTITUTE OF TECHNOLOGY 152-8550 2 12 1 E3-3 2005 8 TEL. 03 5734 2975 URL. http://www.titech.ac.jp/ PROFILE #12;TOKYO INSTITUTE OF TECHNOLOGY 0201 CONTENTS 03 06 06 08 09 10 15 17 25 31 33 37 41 0201 #12;TOKYO INSTITUTE OF TECHNOLOGY TOKYO INSTITUTE

  1. Climate change risk and response

    E-Print Network [OSTI]

    Kahrl, Fredrich; Roland-Holst, David

    2008-01-01

    the Potential Consequences of Climate Variability and Changeand Kate Scow. 2006. “Climate Change: Page 117 ChallengesLandscapes. ” California Climate Change Center White Paper.

  2. Climate & Environment | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Climate & Environment SHARE Climate and Environment Climate and environmental scientists at ORNL conduct research, develop technology and perform analyses to understand and predict...

  3. Climate change risk and response

    E-Print Network [OSTI]

    Kahrl, Fredrich; Roland-Holst, David

    2008-01-01

    and Kate Scow. 2006. “Climate Change: Page 117 ChallengesLandscapes. ” California Climate Change Center White Paper.Sea Level. ” California Climate Change Center White Paper.

  4. Climate Change and National Security

    E-Print Network [OSTI]

    Alyson, Fleming; Summer, Kelly; Summer, Martin; Lauren, Franck; Jonathan, Mark

    2015-01-01

    CLIMATE CHANGE Multiplying Threats to National Securityfor the impacts of climate change on national security. Pagea warming world. Page 11 “Climate change acts as a threat

  5. Climate change risk and response

    E-Print Network [OSTI]

    Kahrl, Fredrich; Roland-Holst, David

    2008-01-01

    The Potential Impacts of Climate Change on Inshore Squid:Fifth Annual California Climate Change Research Conference,Potential Impacts of Climate Change on U.S. Transportation.

  6. Review: Preparing for Climate Change

    E-Print Network [OSTI]

    Kunnas, Jan

    2013-01-01

    Review: Preparing for Climate Change By Michael D.Stephen, Preparing for Climate Change. A Boston Review Book.alkaline paper. “Climate change is inevitable, but disaster

  7. Urban Growth and Climate Change

    E-Print Network [OSTI]

    Kahn, Matthew E.

    2008-01-01

    2007a The Economic Impacts of Climate Change: Evidence fromGreenstone. 2007b. Climate Change, Mortality and Adaptation:and Ariel Dinar, 1999, Climate Change, Agriculture, and

  8. National Institutes of Health Current National Institute

    E-Print Network [OSTI]

    Rau, Don C.

    Library of Medicine John E. Fogarty International Center for Advanced Study in National Center National Institute of Nursing Research National Library of Medicine John E. Fogarty International CenterNational Institutes of Health Current National Institute of Arthritis and Musculoskeletal and Skin

  9. Environmental Change Institute Environmental Change Institute

    E-Print Network [OSTI]

    Oxford, University of

    Environmental Change Institute 2012/13 eci Environmental Change Institute #12;ii Environmental 06 Educating environmental leaders 08 Centre for interdisciplinary doctoral training 10 A thriving, Dumfriesshire (ECI) #12;1 The Environmental Change Institute has 21 years' experience in helping governments

  10. Genome Medicine 2009, 11

    E-Print Network [OSTI]

    Dehene, Frank

    Genome Medicine 2009, 11::88 Correspondence BBrriiddggiinngg tthhee ggaapp bbeettwweeeenn Care Medicine and CRISMA laboratory, University of Pittsburgh School of Medicine, Scaife 602, 3550 Biotechnology Center, University of Torino, Via Nizza 52, I, 10126 Torino, Italy; 10Institutionen för Medicin

  11. Improving biofuel feedstocks by modifying xylan biosynthesis (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Lau, Jane [JBEI

    2013-03-01

    Jane Lau of the Joint BioEnergy Institute on "Improving biofuel feedstocks by modifying xylan biosynthesis" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

  12. Climate and Climate Change COURSE: .............................................................................. EAS B8800

    E-Print Network [OSTI]

    Wolberg, George

    Climate and Climate Change COURSE with a focus on energy transport. Finally, we tackle natural and anthropogenic climate change. This course. Synthesize and apply theory of the various natural and anthropogenic climate change mechanisms to explain

  13. Coral Reef Genomics: Developing tools for functional genomics of coral symbiosis

    E-Print Network [OSTI]

    Schwarz, Jodi; Brokstein, Peter; Manohar, Chitra; Coffroth, Mary Alice; Szmant, Alina; Medina, Monica

    2008-01-01

    Coral Reef Genomics: Developing toolsfor functional genomics of coral symbiosis Jodi SCHWARZ 1 ,symbiosis functional genomics cDNA microarray ABSTRACT

  14. Navigating protected genomics data with UCSC Genome Browser in a Box.

    E-Print Network [OSTI]

    2014-01-01

    H. et al. (2013) Integrative Genomics Viewer (IGV):High-performance genomics data visualization andbrowsers for comparative genomics. Bioinformatics. In press.

  15. FUTURE CLIMATE ANALYSIS

    SciTech Connect (OSTI)

    R.M. Forester

    2000-03-14

    This Analysis/Model Report (AMR) documents an analysis that was performed to estimate climatic variables for the next 10,000 years by forecasting the timing and nature of climate change at Yucca Mountain (YM), Nevada (Figure l), the site of a potential repository for high-level radioactive waste. The future-climate estimates are based on an analysis of past-climate data from analog meteorological stations, and this AMR provides the rationale for the selection of these analog stations. The stations selected provide an upper and a lower climate bound for each future climate, and the data from those sites will provide input to the infiltration model (USGS 2000) and for the total system performance assessment for the Site Recommendation (TSPA-SR) at YM. Forecasting long-term future climates, especially for the next 10,000 years, is highly speculative and rarely attempted. A very limited literature exists concerning the subject, largely from the British radioactive waste disposal effort. The discussion presented here is one method, among many, of establishing upper and lower bounds for future climate estimates. The method used here involves selecting a particular past climate from many past climates, as an analog for future climate. Other studies might develop a different rationale or select other past climates resulting in a different future climate analog.

  16. Climate WorkshopsClimate Workshops for Department Chairsp

    E-Print Network [OSTI]

    Tilbury, Dawn

    Climate WorkshopsClimate Workshops for Department Chairsp University of Wisconsin ADVANCE-IT Slides) #12;Why focus on departmental climate? Individuals experience climate in their immediate workplace negative climate than male faculty Improving department climate is critical for retention and advancement

  17. Climate in China ! Climate is weather over time.

    E-Print Network [OSTI]

    Pan, Feifei

    Climate in China #12;! Climate is weather over time. ! Climatology is the study of climate. ! Climatic regions are areas with similar weather statistics. ! Climate influences ecosystems. ! On land, the location of climatic regions determines the location of ecosystems (e.g., forest, grassland, savanna

  18. A Taste of Algal Genomes from the Joint Genome Institute (Conference...

    Office of Scientific and Technical Information (OSTI)

    from the National Technical Information Service, Springfield, VA at www.ntis.gov. Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and...

  19. A Taste of Algal Genomes from the Joint Genome Institute Kuo...

    Office of Scientific and Technical Information (OSTI)

    Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and economic costs through toxic blooms, provide models for the study of symbiosis,...

  20. A Taste of Algal Genomes from the Joint Genome Institute (Conference...

    Office of Scientific and Technical Information (OSTI)

    Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and economic costs through toxic blooms, provide models for the study of symbiosis,...

  1. ETHICAL DILEMMAS IN CLIMATE CHANGE

    E-Print Network [OSTI]

    Chauve, Cedric

    ETHICAL DILEMMAS IN CLIMATE CHANGE RECOMMENDATIONS FOR CANADIAN CLIMATE POLICY Roundtable Dialogue AND SELECTED THE FOLLOWING CLIMATE CHANGE POLICY AREAS FOR DETAILED DISCUSSION. PARTICIPANTS THEN WORKED Dilemmas in Climate Change roundtable dialogue, convened by Simon Fraser University's Centre for Dialogue

  2. The Climate Policy Dilemma

    E-Print Network [OSTI]

    Pindyck, Robert S.

    Climate policy poses a dilemma for environmental economists. The economic argument for stringent greenhouse gas (GHG) abatement is far from clear. There is disagreement among both climate scientists and economists concerning ...

  3. The Climate Policy Dilemma

    E-Print Network [OSTI]

    Pindyck, Robert S.

    Climate policy poses a dilemma for environmental economists. The economic argument for stringent GHG abatement is far from clear. There is disagreement among both climate scientists and economists over the likelihood of ...

  4. Indigenous Climate Justice Symposium

    Broader source: Energy.gov [DOE]

    The Indigenous Climate Justice Symposium brings together Native speakers who are working to keep fossil fuels in the ground, by stopping coals terminals, oil trains and fracking, and protecting treaty resources from the threat of climate change.

  5. Climate Change Adaptation

    Broader source: Energy.gov [DOE]

    DOE is adapting to climate change by applying a risk-based resiliency approach to identify and minimize climate-related vulnerabilities across all DOE policies, programs and activities.

  6. Climate Leadership Conference

    Office of Energy Efficiency and Renewable Energy (EERE)

    The Climate Leadership Conference is your annual exchange for addressing global climate change through policy, innovation, and business solutions. Forward-thinking lead­ers from busi­ness, gov­ern...

  7. Climate Change and National Security

    E-Print Network [OSTI]

    Alyson, Fleming; Summer, Kelly; Summer, Martin; Lauren, Franck; Jonathan, Mark

    2015-01-01

    data needed to construct effective climate change models and forecasts. Academic “Centers of Excellence” that focus on climate change

  8. Computational methods and analyses in comparative genomics and epigenomics

    E-Print Network [OSTI]

    Peng, Qian

    2012-01-01

    promise of comparative genomics in mammals. Science, 286,homology relationships. Genomics, Dehal, P. and Boore, J.to plant comparative genomics. Genome Research, 13(5), 999–

  9. Salt Stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics approach

    E-Print Network [OSTI]

    Mukhopadhyay, Aindrila

    2010-01-01

    2002. Integrating cancer genomics and proteomics in theWeb site for comparative genomics. Genome Res 15:1015-22.Hildenborough: An integrated genomics approach. Aindrila

  10. METEOROLOGICAL Journal of Climate

    E-Print Network [OSTI]

    Feng, Ming

    AMERICAN METEOROLOGICAL SOCIETY Journal of Climate EARLY ONLINE RELEASE This is a preliminary PDF it is available. © 201 American Meteorological Society1 #12;Sun et al. climate downscaling of the Australian currents 1 Marine downscaling of a future climate scenario for Australian boundary currents Chaojiao Sun

  11. CLIMATE CHANGE AND BIODIVERSITY

    E-Print Network [OSTI]

    CLIMATE CHANGE AND BIODIVERSITY THE CONTRIBUTION OF THE NATIONAL MUSEUM OF NATURAL HISTORY #12;At, the origin of which is mainly related to human activities. For the first time climate change sends a strong of climate change and that will fully find material expression in the debates. What will the world we shape

  12. CLIMATE CHANGE & THE GREENHOUSE

    E-Print Network [OSTI]

    Tobar, Michael

    CLIMATE CHANGE & THE GREENHOUSE EFFECT #12;This development of these materials was supported under.nasa.gov/Features/BlueMarble/BlueMarble_history.php © 2014 University of Western Australia ISBN 978-0-646-93241-5 Title: Climate change and the greenhouse OF CONTENTS TABLE OF CONTENTS Introduction to climate change resources 5 Alternative conceptions 6 References

  13. Forest Research: Climate Change

    E-Print Network [OSTI]

    Forest Research: Climate Change projects Forest Research is part of the Forestry Commission of climate change-related research is wide-ranging, covering impact assessment and monitoring, adaptation around a quarter of its research budget with Forest Research on climate change and related programmes

  14. Climate change vulnerability

    E-Print Network [OSTI]

    Hilderbrand, Robert H.

    Climate change vulnerability assessment of the Verde Island Passage, Philippines #12;ii This document should be cited as: R. Boquiren, G. Di Carlo, and M.C. Quibilan (Eds). 2010. Climate Change, Marine Climate Change Program Conservation International­Global Marine Division epidgeon

  15. Environment and Climate Change

    E-Print Network [OSTI]

    Galles, David

    Migration, Environment and Climate Change: ASSESSING THE EVIDENCE #12;The opinions expressed;Migration, Environment and Climate Change: ASSESSING THE EVIDENCE Edited by Frank Laczko and Christine with with the financial support of #12;3 Migration, Environment and Climate Change: Assessing the Evidence Contents

  16. Campus Climate Camden Campus

    E-Print Network [OSTI]

    Hanson, Stephen José

    Campus Climate Report Camden Campus New Brunswick/Piscataway Campus Newark Campus Student Survey #12;I. INTRODUCTION Executive Summary The Rutgers Campus Climate Survey was designed to determine how University, the campus climate surveys revealed strong areas of satisfaction with the Rutgers University

  17. Climate Change Workshop 2007

    E-Print Network [OSTI]

    Nebraska-Lincoln, University of

    1 Climate Change Workshop 2007 Adaptive Management and Resilience Relevant for the Platte River, UNL Climate Change Workshop 2007 · Resilience ·Why it matters · Adaptive Management ·How it helps ·Adaptive Capacity · What it is Overview Climate Change Workshop 2007 "A public Domain, once a velvet carpet

  18. Climate2012 State of the

    E-Print Network [OSTI]

    Greenslade, Diana

    Climate2012 State of the #12;2 State of the Climate 2012 Climate2012 State of the The previous State of the Climate, released in March 2010 (www.csiro.au/Outcomes/Climate/Understanding/State-of-the- Climate.aspx) highlighted a multi-decadal warming trend over Australia's land and oceans, an increase

  19. Climate Change Economics and Policy

    E-Print Network [OSTI]

    Romano, Daniela

    AFRICA COLLEGE Centre for Climate Change Economics and Policy Adapting to Climate Change 3 CLIMATE...Furthermore, there is strong scientific evidence that climate change will disrupt the global economy, environment and society a growing population in a changing climate is, therefore, a major global challenge. Changes in climate

  20. Climate Change Scenario Planning in Alaska's National Parks: Stakeholder Involvement in the Decision-Making Process

    SciTech Connect (OSTI)

    Ernst, Kathleen M; Van Riemsdijk, Dr. Micheline

    2013-01-01

    This article studies the participation of stakeholders in climate change decision-making in Alaska s National Parks. We place stakeholder participation within literatures on environmental and climate change decision-making. We conducted participant observation and interviews in two planning workshops to investigate the decision-making process, and our findings are three-fold. First, the inclusion of diverse stakeholders expanded climate change decision-making beyond National Park Service (NPS) institutional constraints. Second, workshops of the Climate Change Scenario Planning Project (CCSPP) enhanced institutional understandings of participants attitudes towards climate change and climate change decision-making. Third, the geographical context of climate change influences the decision-making process. As the first regional approach to climate change decision-making within the NPS, the CCSPP serves as a model for future climate change planning in public land agencies. This study shows how the participation of stakeholders can contribute to robust decisions, may move climate change decision-making beyond institutional barriers, and can provide information about attitudes towards climate change decision-making.

  1. Climate change scenario planning in Alaska's National Parks: Stakeholder involvement in the decision-making process

    SciTech Connect (OSTI)

    Ernst, Kathleen M; Van Riemsdijk, Dr. Micheline

    2013-01-01

    This article studies the participation of stakeholders in climate change decision-making in Alaska s National Parks. We place stakeholder participation within literatures on environmental and climate change decision-making. We conducted participant observation and interviews in two planning workshops to investigate the decision-making process, and our findings are three-fold. First, the inclusion of diverse stakeholders expanded climate change decision-making beyond National Park Service (NPS) institutional constraints. Second, workshops of the Climate Change Scenario Planning Project (CCSPP) enhanced institutional understandings of participants attitudes towards climate change and climate change decision-making. Third, the geographical context of climate change influences the decisionmaking process. As the first regional approach to climate change decision-making within the NPS, the CCSPP serves as a model for future climate change planning in public land agencies. This study shows how the participation of stakeholders can contribute to robust decisions, may move climate change decision-making beyond institutional barriers, and can provide information about attitudes towards climate change decision-making.

  2. Net primary production of terrestrial ecosystems in China and its equilibrium responses to changes in climate and

    E-Print Network [OSTI]

    in climate and atmospheric CO2 concentration X. Xiao1,2 , J.M. Melillo1 , D.W. Kicklighter1 , Y. Pan1 , A of Technology, Cambridge, MA 02139 3 Institute of Arctic Biology, University of Alaska, Fairbanks, AK 99775) in China for contemporary climate and NPP responses to elevated CO2 and climate changes projected by three

  3. Saint Joseph's University Institute for Environmental Stewardship

    SciTech Connect (OSTI)

    McCann, Michael; Springer, Clint

    2014-06-18

    Task A: Examination of the physiological, morphological, and reproductive responses of Panicum virgatum (switchgrass) cultivars identified as potential biofuel producing cultivars as well as naturally-occurring varieties of switchgrass to projected changes in climate for the central portion of the United States. This project was a multi-year project set in a field site located at the Konza Prairie Biological Station near Manhattan, KS USA. The major objective of the study was to understand the physiological and growth responses of the important biofuel grass species, Panicum virgatum (switch grass) to simulated changes in precipitation expected for the Central Plains region of the United States. Population level adaptation to broad-scale regional climates or within-population variation in genome size of this genetically and phenotypically diverse C4 grass species may influence the responses to future precipitation variability associated with climate change. Therefore, we investigated switchgrass responses to water variability between natural populations collected across latitudinal gradient and populations. P. virgatum plants from natural populations originating from Kansas, Oklahoma, and Texas received frequent, small precipitation events (“ambient’) or infrequent, large precipitation events (‘altered”) to simulate contrasting rainfall variability expected from this region. We measured leaf-level physiology, aboveground biomass varied significantly by population origin but did not differ by genome size. Our results suggest that trait variation in P. virgatum is primarily attributed to population-level adaptation across latitudinal gradient, not genome size, and that neither population-level adaptation nor genome size may be important predictors of P. virgatum responses to future climatic conditions. Based solely on the data presented here, the most important consideration when deciding what varieties of switchgrass to cultivate for biofuel feedstocks under future climate scenarios is local adaptation and not necessarily genome size as has been hypothesized in the literature. Task B: Installation of an extensive green roof system on the Science Center at Saint Joseph's University for research, research-training and educational outreach activities. An experimental green roof system was designed and installed by an outside contractor (Roofmeadows) on the roof of the Science Center at Saint Joseph's University. The roof system includes four test plots, each with a different drainage system, instrumentation to monitor storm water retention, roof deck temperature, heat flux into and out of the building, rain fall, wind speed and direction, relative humidity and heat emission from the roof system. The vegetative roof was planted with 26 species of plants, distributed throughout the roof area, to assess species/variety growth and coverage characteristics, both in terms of the different drain layer systems, and in terms of the different exposures along the north to south axis of the building. Analysis of the drain layer performance, in terms of storm water retention, shows that the aggregate (stone) drainage layer system performed the best, with the moisture management mat system second, and the geotextile drain layer and reservoir sheet layer systems coming in last. This information is of value in the planning and design of vegetative roof systems since the different types of drainage layer systems have different installation costs and different weights. The different drainage layer systems also seem to be having an impact on plant growth and spread with the test plot with the reservoir sheet layer actually having the poorest plant coverage and plant spread of all areas of the roof studied. Plant growth performance analysis is ongoing, but significant differences have been observed in the third growing season ('13) along the north to south axis, with most species doing better towards the northern end of the roof (in terms of percent ground coverage and plant spread and reproduction). Interestingly, plant growth in all f

  4. Saint Joseph's University Institute for Environmental Stewardship

    SciTech Connect (OSTI)

    McCann, Micahel P.; Springer, Clint J.

    2014-06-03

    Task A: Examination of the physiological, morphological, and reproductive responses of Panicum virgatum (switchgrass) cultivars identified as potential biofuel producing cultivars as well as naturally-occurring varieties of switchgrass to projected changes in climate for the central portion of the United States. This project was a multi-year project set in a field site located at the Konza Prairie Biological Station near Manhattan, KS USA. The major objective of the study was to understand the physiological and growth responses of the important biofuel grass species, Panicum virgatum (switch grass) to simulated changes in precipitation expected for the Central Plains region of the United States. Population level adaptation to broad-scale regional climates or within-population variation in genome size of this genetically and phenotypically diverse C4 grass species may influence the responses to future precipitation variability associated with climate change. Therefore, we investigated switchgrass responses to water variability between natural populations collected across latitudinal gradient and populations. P. virgatum plants from natural populations originating from Kansas, Oklahoma, and Texas received frequent, small precipitation events (“ambient’) or infrequent, large precipitation events (‘altered”) to simulate contrasting rainfall variability expected from this region. We measured leaf-level physiology, aboveground biomass varied significantly by population origin but did not differ by genome size. Our results suggest that trait variation in P. virgatum is primarily attributed to population-level adaptation across latitudinal gradient, not genome size, and that neither population-level adaptation nor genome size may be important predictors of P. virgatum responses to future climatic conditions. Based solely on the data presented here, the most important consideration when deciding what varieties of switchgrass to cultivate for biofuel feedstocks under future climate scenarios is local adaptation and not necessarily genome size as has been hypothesized in the literature. Task B: Installation of an extensive green roof system on the Science Center at Saint Joseph's University for research, research-training and educational outreach activities. An experimental green roof system was designed and installed by an outside contractor (Roofmeadows) on the roof of the Science Center at Saint Joseph's University. The roof system includes four test plots, each with a different drainage system, instrumentation to monitor storm water retention, roof deck temperature, heat flux into and out of the building, rain fall, wind speed and direction, relative humidity and heat emission from the roof system. The vegetative roof was planted with 26 species of plants, distributed throughout the roof area, to assess species/variety growth and coverage characteristics, both in terms of the different drain layer systems, and in terms of the different exposures along the north to south axis of the building. Analysis of the drain layer performance, in terms of storm water retention, shows that the aggregate (stone) drainage layer system performed the best, with the moisture management mat system second, and the geotextile drain layer and reservoir sheet layer systems coming in last. This information is of value in the planning and design of vegetative roof systems since the different types of drainage layer systems have different installation costs and different weights. The different drainage layer systems also seem to be having an impact on plant growth and spread with the test plot with the reservoir sheet layer actually having the poorest plant coverage and plant spread of all areas of the roof studied. Plant growth performance analysis is ongoing, but significant differences have been observed in the third growing season ('13) along the north to south axis, with most species doing better towards the northern end of the roof (in terms of percent ground coverage and plant spread and reproduction). Interestingly, plant growth in all f

  5. Saint Joseph's University Institute for Environmental Stewardship

    SciTech Connect (OSTI)

    McCann, Michael P.; Springer, Clint J.

    2014-06-05

    Task A: Examination of the physiological, morphological, and reproductive responses of Panicum virgatum (switchgrass) cultivars identified as potential biofuel producing cultivars as well as naturally-occurring varieties of switchgrass to projected changes in climate for the central portion of the United States. This project was a multi-year project set in a field site located at the Konza Prairie Biological Station near Manhattan, KS USA. The major objective of the study was to understand the physiological and growth responses of the important biofuel grass species, Panicum virgatum (switch grass) to simulated changes in precipitation expected for the Central Plains region of the United States. Population level adaptation to broad-scale regional climates or within-population variation in genome size of this genetically and phenotypically diverse C4 grass species may influence the responses to future precipitation variability associated with climate change. Therefore, we investigated switchgrass responses to water variability between natural populations collected across latitudinal gradient and populations. P. virgatum plants from natural populations originating from Kansas, Oklahoma, and Texas received frequent, small precipitation events (“ambient’) or infrequent, large precipitation events (‘altered”) to simulate contrasting rainfall variability expected from this region. We measured leaf-level physiology, aboveground biomass varied significantly by population origin but did not differ by genome size. Our results suggest that trait variation in P. virgatum is primarily attributed to population-level adaptation across latitudinal gradient, not genome size, and that neither population-level adaptation nor genome size may be important predictors of P. virgatum responses to future climatic conditions. Based solely on the data presented here, the most important consideration when deciding what varieties of switchgrass to cultivate for biofuel feedstocks under future climate scenarios is local adaptation and not necessarily genome size as has been hypothesized in the literature. Task B: Installation of an extensive green roof system on the Science Center at Saint Joseph's University for research, research-training and educational outreach activities. An experimental green roof system was designed and installed by an outside contractor (Roofmeadows) on the roof of the Science Center at Saint Joseph's University. The roof system includes four test plots, each with a different drainage system, instrumentation to monitor storm water retention, roof deck temperature, heat flux into and out of the building, rain fall, wind speed and direction, relative humidity and heat emission from the roof system. The vegetative roof was planted with 26 species of plants, distributed throughout the roof area, to assess species/variety growth and coverage characteristics, both in terms of the different drain layer systems, and in terms of the different exposures along the north to south axis of the building. Analysis of the drain layer performance, in terms of storm water retention, shows that the aggregate (stone) drainage layer system performed the best, with the moisture management mat system second, and the geotextile drain layer and reservoir sheet layer systems coming in last. This information is of value in the planning and design of vegetative roof systems since the different types of drainage layer systems have different installation costs and different weights. The different drainage layer systems also seem to be having an impact on plant growth and spread with the test plot with the reservoir sheet layer actually having the poorest plant coverage and plant spread of all areas of the roof studied. Plant growth performance analysis is ongoing, but significant differences have been observed in the third growing season ('13) along the north to south axis, with most species doing better towards the northern end of the roof (in terms of percent ground coverage and plant spread and reproduction). Interestingly, plant growth in all f

  6. Petroleum Institute Scholarly Publications

    E-Print Network [OSTI]

    Abu Dhabi The Petroleum Institute Scholarly Publications 2010 #12;#12;The Petroleum Institute Belhaj Petroleum Engineering Sadoon Morad Petroleum Geosciences Sivakumar Sivasubramaniam College of Arts departments within the Petroleum Institute. Names in bold show Petroleum Institute faculty who are attached

  7. POSTDOCTORAL POSITION IN BIOINFORMATICS AND EVOLUTIONARY GENOMICS: Next generation sequencing and analysis of complex polyploid genomes

    E-Print Network [OSTI]

    Rennes, Université de

    POSTDOCTORAL POSITION IN BIOINFORMATICS AND EVOLUTIONARY GENOMICS: Next generation sequencing and analysis of complex polyploid genomes The research group Genome Evolution and Speciation (Team) to work on the analysis of genome and transcriptome sequence data (generated using 454 Roche

  8. Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans

    E-Print Network [OSTI]

    2007-01-01

    PLoS BIOLOGY Population Genomics: Whole-Genome Analysis ofwww.plosbiology.org Population Genomics of D. simulans Table11 | e310 Population Genomics of D. simulans Table S15. GO

  9. GIS: a web-based genomics information system for efficiently manipulating and accessing genome physical maps 

    E-Print Network [OSTI]

    Chen, Huaming

    2000-01-01

    Biological science has entered the genome era. Global genome integrative physical and genetic mapping promises to revolutionize modern genomics research. To facilitate manipulation and applications of the results from genomics research, many...

  10. A Novel Approach for Comparative Genomics

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    A Novel Approach for Comparative Genomics & Annotation Transfer Alban MANCHERON Raluca URICARU Eric is genome comparison good for?" Genome comparison is crucial for genome annotation, regulatory motifs identification, and vaccine design aims at finding genomic regions either specific to or in one

  11. Genome: Unlocking Life's Code for Teachers of

    E-Print Network [OSTI]

    Miller, Scott

    GENOME CODE LIFE'S UNLOCKING Genome: Unlocking Life's Code Educator's Guide for Teachers of Grades Glossary 30 Other Resources 32 What the Exhibit Offers Genomics--the study of the entire genome. It is important that students understand what genomics is and what it teaches us about ourselves and the rest

  12. Original article Neisseria Base: a comparative genomics

    E-Print Network [OSTI]

    Jordan, King

    Original article Neisseria Base: a comparative genomics database for Neisseria meningitidis Lee S, septicemia and in some cases pneumonia. Genomic studies hold great promise for N. meningitidis research genomics database and genome browser that houses and displays publicly available N. meningitidis genomes

  13. GenomeView: a next-generation genome browser Thomas Abeel1,2,3,

    E-Print Network [OSTI]

    Gent, Universiteit

    of NGS is the re-sequencing of genomes, such as the 1000 human genomes project (http://www .1000genomes.org/) or the 1001 Arabidopsis genome project (http://www.1001genomes.org/). Genome (re)sequencing is importantGenomeView: a next-generation genome browser Thomas Abeel1,2,3, *, Thomas Van Parys1,2 , Yvan Saeys

  14. Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Doethideomycetes Fungi

    SciTech Connect (OSTI)

    Ohm, Robin A.; Feau, Nicolas; Henrissat, Bernard; Schoch, Conrad L.; Horwitz, Benjamin A.; Barry, Kerrie W.; Condon, Bradford J.; Copeland, Alex C.; Dhillon, Braham; Glaser, Fabien; Hesse, Cedar N.; Kosti, Idit; LaButti, Kurt; Lindquist, Erika A.; Lucas, Susan; Salamov, Asaf A.; Bradshaw, Rosie E.; Ciuffetti, Lynda; Hamelin, Richard C.; Kema, Gert H. J.; Lawrence, Christopher; Scott, James A.; Spatafora, Joseph W.; Turgeon, B. Gillian; de Wit, Pierre J. G. M.; Zhong, Shaobin; Goodwin, Stephen B.; Grigoriev, Igor V.

    2012-03-13

    The class of Dothideomycetes is one of the largest and most diverse groups of fungi. Many are plant pathogens and pose a serious threat to agricultural crops grown for biofuel, food or feed. Most Dothideomycetes have only a single host and related species can have very diverse host plants. Eighteen genomes of Dothideomycetes have currently been sequenced by the Joint Genome Institute and other sequencing centers. Here we describe the results of comparative analyses of the fungi in this group.

  15. Future Climate Analysis

    SciTech Connect (OSTI)

    James Houseworth

    2001-10-12

    This Analysis/Model Report (AMR) documents an analysis that was performed to estimate climatic variables for the next 10,000 years by forecasting the timing and nature of climate change at Yucca Mountain (YM), Nevada (Figure 1), the site of a potential repository for high-level radioactive waste. The future-climate estimates are based on an analysis of past-climate data from analog meteorological stations, and this AMR provides the rationale for the selection of these analog stations. The stations selected provide an upper and a lower climate bound for each future climate, and the data from those sites will provide input to the infiltration model (USGS 2000) and for the total system performance assessment for the Site Recommendation (TSPA-SR) at YM. Forecasting long-term future climates, especially for the next 10,000 years, is highly speculative and rarely attempted. A very limited literature exists concerning the subject, largely from the British radioactive waste disposal effort. The discussion presented here is one method, among many, of establishing upper and lower bounds for future climate estimates. The method used here involves selecting a particular past climate from many past climates, as an analog for future climate. Other studies might develop a different rationale or select other past climates resulting in a different future climate analog. Revision 00 of this AMR was prepared in accordance with the ''Work Direction and Planning Document for Future Climate Analysis'' (Peterman 1999) under Interagency Agreement DE-AI08-97NV12033 with the U.S. Department of Energy (DOE). The planning document for the technical scope, content, and management of ICN 01 of this AMR is the ''Technical Work Plan for Unsaturated Zone (UZ) Flow and Transport Process Model Report'' (BSC 2001a). The scope for the TBV resolution actions in this ICN is described in the ''Technical Work Plan for: Integrated Management of Technical Product Input Department''. (BSC 2001b, Addendum B, Section 4.1).

  16. Editorial: The Human Genome Project

    E-Print Network [OSTI]

    Crawford, Michael H.; Baer, A.S.; Hall, R.; Omenn, G.S.; Thomson, G.J.; Wilson, A.C.

    1990-08-01

    iv / Editorial: The Human Genome Project Dear readers, The last few decades have seen a number of exciting developments in genetics. First, Watson and Crick broke the genetic code; since then, tech-nologic and methodologic breakthroughs have... permitted the study and direct manipulation of our DNA. Now there is an international ground swell to map and sequence the human genome. The Bush administration had originally requested $128 million in last year's budget for the Human Genome Project. However...

  17. The Genomes and Metagenomes (GEM) Catalogue (first presentation) and The ISA-GCDML Workshop (second presentation) (GSC8 Meeting)

    ScienceCinema (OSTI)

    Field, Dawn [NERC Centre for Ecology and Hydrology]; Sansone, Susanna [EBI

    2011-04-29

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding ''Research Coordination Network'' from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Dawn Field of the NERC Centre for Ecology & Hydrology briefly introduces the GEM Catalogue, followed by Susanna Sansone of the European Bioinformatics Institute who talks about the ISA-GCDML workshop at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

  18. Genomic Sciences | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    to clean energy and environmental applications. Multidisciplinary genomic science research and communication resources at ORNL include the following: Plant Systems Biology...

  19. Complete genome sequence of Hirschia baltica type strain (IFAM 1418T)

    SciTech Connect (OSTI)

    Chertkov, Olga [Los Alamos National Laboratory (LANL); Brown, Pamela J.B. [Indiana University; Kysela, David T. [Indiana University; De Pedro, Miguel A. [Universidad Autonoma de Madrid, Madrid; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Chang, Yun-Juan [ORNL; Jeffries, Cynthia [Oak Ridge National Laboratory (ORNL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Tindall, Brian [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Brun, Yves V. [Indiana University

    2011-01-01

    The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacte- ria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a published genome sequence. H. bal- tica is of special interest because it has a dimorphic life cycle and is a stalked, budding bacte- rium. The 3,455,622 bp long chromosome and 84,492 bp plasmid with a total of 3,222 pro- tein-coding and 44 RNA genes were sequenced as part of the DOE Joint Genome Institute Program CSP 2008.

  20. Tissue sampling and standards for vertebrate genomics

    E-Print Network [OSTI]

    2012-01-01

    and standards for vertebrate genomics. GigaScience 2012 1:8.transition to conservation genomics. TIG 2010, 26:177–187.Siemens DH: Ecological genomics––changing perspectives on

  1. Evolutionary Genomics of Salmonella enterica Subspecies

    E-Print Network [OSTI]

    2013-01-01

    M. 2002. Evolutionary genomics of Salmonella: genesubsystems technology. BMC Genomics 9:75. 23. Ochman H,Salmonella enterica. BMC Genomics 12:425. PubMed. 29. Falush

  2. Trichoderma: the genomics of opportunistic success

    E-Print Network [OSTI]

    Druzhinina, Irina S.

    2011-01-01

    of a fungal prey. BMC Genomics 10, 567 (2009). This studythe TrichoEST functional genomics approach. Curr. Genet. 51,in Hypocrea jecorina. BMC Genomics. 9, 430 (2008) Mukherjee,

  3. Functional Genomics of Drought Tolerance in Bioenergy Crops

    SciTech Connect (OSTI)

    Yin, Hengfu [ORNL; Chen, Rick [ORNL; Yang, Jun [ORNL; Weston, David [ORNL; Chen, Jay [ORNL; Muchero, Wellington [ORNL; Ye, Ning [ORNL; Tschaplinski, Timothy J [ORNL; Wullschleger, Stan D [ORNL; Cheng, Zong-Ming [ORNL; Tuskan, Gerald A [ORNL; Yang, Xiaohan [ORNL

    2014-01-01

    With the predicted trends in climate change, drought will increasingly impose a grand challenge to biomass production. Most of the bioenergy crops have some degree of drought susceptibility with low water-use efficiency (WUE). It is imperative to improve drought tolerance and WUE in bioenergy crops for sustainable biomass production in arid and semi-arid regions with minimal water input. Genetics and functional genomics can play a critical role in generating knowledge to inform and aid genetic improvement of drought tolerance in bioenergy crops. The molecular aspect of drought response has been extensively investigated in model plants like Arabidopsis, yet our understanding of the molecular mechanisms underlying drought tolerance in bioenergy crops are limited. Crops exhibit various responses to drought stress depending on species and genotype. A rational strategy for studying drought tolerance in bioenergy crops is to translate the knowledge from model plants and pinpoint the unique features associated with individual species and genotypes. In this review, we summarize the general knowledge about drought responsive pathways in plants, with a focus on the identification of commonality and specialty in drought responsive mechanisms among different species and/or genotypes. We describe the genomic resources developed for bioenergy crops and discuss genetic and epigenetic regulation of drought responses. We also examine comparative and evolutionary genomics to leverage the ever-increasing genomics resources and provide new insights beyond what has been known from studies on individual species. Finally, we outline future exploration of drought tolerance using the emerging new technologies.

  4. INSTITUTIONAL MEMBERS CURRENT SCIENCE ASSOCIATION

    E-Print Network [OSTI]

    Giri, Ranjit K.

    , Guwahati 40. Indian Institute of Technology, Hyderabad 41. Indian Institute of Technology, Indore 42

  5. Institute for Climate & Atmospheric Science Department of Earth & Atmospheric Sciences

    E-Print Network [OSTI]

    Azevedo, Ricardo

    platforms to study numerous trace gases including carbon dioxide. We operate a suite of remote sensing is elucidating the carbon cycle through the satellite data (e.g., AIRS, TES, GOSAT, and OCO2

  6. CCSI SAB Bios 1 January 2012 CLIMATE CHANGE SCIENCE INSTITUTE

    E-Print Network [OSTI]

    Systems Group serving developers of Earth system models at the National Oceanic and Atmospheric], as well as community standards such as the Earth System Modeling Framework and PRISM [Parameter

  7. Mexico National Institute of Ecology and Climate Change (INECC) | Open

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTION J APPENDIX ECoop Inc Jump to: navigation,Mereg GmbH Jump to: navigation,Energy Information

  8. Ethiopia-Strategic Climate Institutions Programme (SCIP) | Open Energy

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTION J APPENDIX E LISTStar2-0057-EA Jump to:ofEnia SpA Jump to:EnergyEthanol Ventures

  9. Climate Risk and Financial Institutions | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTIONRobertsdale, Alabama (Utility Company) Jump to:NewMinnesota:Protection Action Fund (Redirected

  10. Ethiopia-Strategic Climate Institutions Programme (SCIP) | Open Energy

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTION J APPENDIX ECoopButtePowerEdisto Electric Coop,Erosion Flume Jump to:Ethanol CapitalInformation

  11. Institutional Investors Group on Climate Change IIGCC | Open Energy

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTION J APPENDIXsource History View NewGuam:on OpeneiAlbanian Centre for Energy

  12. Climate Change Review of Muller's chapter on Climate Change from

    E-Print Network [OSTI]

    Browder, Tom

    Climate Change · Review of Muller's chapter on Climate Change from Physics for Future Society) controversy on climate change (e.g. resignation of Hal Lewis, Ivar Giaever and other notable. #12;Some climate changes basics · IPCC = Intergovernmental Panel on Climate Change · The IPCC

  13. Climate Sensitivity of the Community Climate System Model Version 4

    E-Print Network [OSTI]

    Bitz, Cecilia

    Climate Sensitivity of the Community Climate System Model Version 4 C. M. Bitz 1 , K.M. Shell 2 , P. Equilibrium climate sensitivity of the Community Climate System Model Version 4 (CCSM4) is 3.20 C for 1 version (CCSM3). The transient climate sensitivity of CCSM4 at 1 resolution is 1.72 C, which is about 0

  14. Climate Change: One, or Many? Professor of Climate and Culture

    E-Print Network [OSTI]

    Hulme, Mike

    Climate Change: One, or Many? Mike Hulme Professor of Climate and Culture Department of Geography Presidential Session: `Geographies of Climate Change' AAG Annual Conference, Tampa, Florida, 7-11 April 2014 climate system' 2 `The Plan' #12;One Climate? "... a complex, interactive system consisting

  15. Climate closure: Game over for climate skep4cs

    E-Print Network [OSTI]

    Lovejoy, Shaun

    Climate closure: Game over for climate skep4cs S. Lovejoy, McGill, Physics McGill, Macdonald College Campus 4 November, 2014 #12;What is the climate climate is what you expect... "Climate is what you expect, weather is what you get." -Lazarus Long

  16. Climate history and paleoclimate -HS 2011 Future climate

    E-Print Network [OSTI]

    Gilli, Adrian

    Climate history and paleoclimate - HS 2011 Future climate Climate History & Paleoclimate - December 9, 2011 1 #12;Climate history and paleoclimate - HS 2011 IPCC 2007 4th Assessment report (AR4) More information can be found: http://www.ipcc.ch/ Remark: 5th assessment report is due in 2013/2014 2 #12;Climate

  17. Climate history and paleoclimate -HS 2011 Climate proxies

    E-Print Network [OSTI]

    Gilli, Adrian

    Climate history and paleoclimate - HS 2011 Climate proxies 18O Climate History & Paleoclimate ­ September 30, 2011 #12;How do we know about the past? Instrumental Historical Through proxies Climate proxies Climate history and paleoclimate - HS 2011 #12;What is a `proxy'? "Proxy, as used here

  18. Human Genome: DOE Origins

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would likeUniverse (JournalvivoHigh energyHighlandWorkshop-SummerHow is theHughHumanHuman Genome

  19. Human Genome Program Image Gallery (from genomics.energy.gov)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    This collection contains approximately 240 images from the genome programs of DOE's Office of Science. The images are divided into galleries related to biofuels research, systems biology, and basic genomics. Each image has a title, a basic citation, and a credit or source. Most of the images are original graphics created by the Genome Management Information System (GMIS). GMIS images are recognizable by their credit line. Permission to use these graphics is not needed, but please credit the U.S. Department of Energy Genome Programs and provide the website http://genomics.energy.gov. Other images were provided by third parties and not created by the U.S. Department of Energy. Users must contact the person listed in the credit line before using those images. The high-resolution images can be downloaded.

  20. Association Genetics of Populus trichocarpa or Resequencing in Populus: Towards Genome Wide Association Genetics (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Tuskan, Gerry

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gerry Tuskan of Oak Ridge National Laboratory on "Resequencing in Populus: Towards Genome Wide Association Genetics" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  1. Association Genetics of Populus trichocarpa or Resequencing in Populus: Towards Genome Wide Association Genetics (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Tuskan, Gerry

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gerry Tuskan of Oak Ridge National Laboratory on "Resequencing in Populus: Towards Genome Wide Association Genetics" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  2. Detection and Attribution of Regional Climate Change

    SciTech Connect (OSTI)

    Bala, G; Mirin, A

    2007-01-19

    We developed a high resolution global coupled modeling capability to perform breakthrough studies of the regional climate change. The atmospheric component in our simulation uses a 1{sup o} latitude x 1.25{sup o} longitude grid which is the finest resolution ever used for the NCAR coupled climate model CCSM3. Substantial testing and slight retuning was required to get an acceptable control simulation. The major accomplishment is the validation of this new high resolution configuration of CCSM3. There are major improvements in our simulation of the surface wind stress and sea ice thickness distribution in the Arctic. Surface wind stress and ocean circulation in the Antarctic Circumpolar Current are also improved. Our results demonstrate that the FV version of the CCSM coupled model is a state of the art climate model whose simulation capabilities are in the class of those used for IPCC assessments. We have also provided 1000 years of model data to Scripps Institution of Oceanography to estimate the natural variability of stream flow in California. In the future, our global model simulations will provide boundary data to high-resolution mesoscale model that will be used at LLNL. The mesoscale model would dynamically downscale the GCM climate to regional scale on climate time scales.

  3. Comparative Genome Structure, Secondary Metabolite, and Effector...

    Office of Scientific and Technical Information (OSTI)

    Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens Citation Details In-Document Search Title: Comparative Genome Structure,...

  4. Implications of structural genomics target selection strategies...

    Office of Scientific and Technical Information (OSTI)

    Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches Citation Details In-Document Search Title: Implications of structural...

  5. Corey Clemons Genomics and Medicine

    E-Print Network [OSTI]

    Brutlag, Doug

    the Human Genome Project was completed. The goal of the HGP was to sequence the entire human genome in order to the private sector.i One unintended consequence of the HGP is that it actually challenged previously held with previously misunderstood conditions and ailments. Some practical uses of the HGP are the development

  6. Weizmann Institute 76100 Rehovot,

    E-Print Network [OSTI]

    Prior, Yehiam

    , Weizmann Institute 2006 - Alternative Energy Research Initiative (WIS), Steering Committee 2006 - Dean by the international diamond processing community, and sold hundreds of machines world wide. 1988 - 1990 Bell Foundation Israel Diamond Institute MAGNET program (LESHED, diode pumped lasers consortium) Minerva

  7. Conservation and Global Climate Change

    E-Print Network [OSTI]

    Landweber, Laura

    V.6 Conservation and Global Climate Change Diane M. Debinski and Molly S. Cross OUTLINE 1. Introduction 2. How climate is changing 3. Environmental responses to climate change 4. Consequences of climate the coming decades will be preserving biodiversity in the face of climate change. It has become increasingly

  8. Abrupt Climate Change Inevitable Surprises

    E-Print Network [OSTI]

    Abrupt Climate Change Inevitable Surprises Committee on Abrupt Climate Change Ocean Studies Board of Congress Cataloging-in-Publication Data Abrupt climate change : inevitable surprises / Committee on Abrupt Climate Change, Ocean Studies Board, Polar Research Board, Board on Atmospheric Sciences and Climate

  9. Climate Change Proposed Scoping Plan

    E-Print Network [OSTI]

    Climate Change Proposed Scoping Plan a amework for change Prepared by the California Air ResourcesBackgroundBackgroundBackground ............................................................................................................................................................................................................................................................................................................................................................................................................ 4444 1. Climate Change Policy in California1. Climate Change Policy in California1. Climate Change Policy in California1. Climate Change Policy in California

  10. Climate Change and Runoff Management

    E-Print Network [OSTI]

    Sheridan, Jennifer

    Climate Change and Runoff Management in Wisconsin Fox-Wolf Watershed Alliance May 10, 2011 David S of Engineering #12;Overview · Understanding climate change · Wisconsin's changing climate · Expected impacts · Adaptation strategies #12;What is climate? "Climate is properly the long average of weather in a single place

  11. The Climate Impacts LINK Project

    E-Print Network [OSTI]

    Feigon, Brooke

    The Climate Impacts LINK Project The Climatic Research Unit, University of East Anglia Funded by the UK Department of the Environment, Transport and the Regions, Contract Ref EPG 1/1/68 The Climate Impacts LINK Project: Applying Results from the Hadley Centre's Climate Change Experiments for Climate

  12. Future Climate Analysis

    SciTech Connect (OSTI)

    C. G. Cambell

    2004-09-03

    This report documents an analysis that was performed to estimate climatic variables for the next 10,000 years by forecasting the timing and nature of climate change at Yucca Mountain, Nevada, the site of a repository for spent nuclear fuel and high-level radioactive waste. The future-climate estimates are based on an analysis of past-climate data from analog meteorological stations, and this report provides the rationale for the selection of these analog stations. The stations selected provide an upper and a lower climate bound for each future climate, and the data from those sites will provide input to the following reports: ''Simulation of Net Infiltration for Present-Day and Potential Future Climates'' (BSC 2004 [DIRS 170007]), ''Total System Performance Assessment (TSPA) Model/Analysis for the License Application'' (BSC 2004 [DIRS 168504]), ''Features, Events, and Processes in UZ Flow and Transport'' (BSC 2004 [DIRS 170012]), and ''Features, Events, and Processes in SZ Flow and Transport'' (BSC 2004 [DIRS 170013]). Forecasting long-term future climates, especially for the next 10,000 years, is highly speculative and rarely attempted. A very limited literature exists concerning the subject, largely from the British radioactive waste disposal effort. The discussion presented here is one available forecasting method for establishing upper and lower bounds for future climate estimates. The selection of different methods is directly dependent on the available evidence used to build a forecasting argument. The method used here involves selecting a particular past climate from many past climates, as an analog for future climate. While alternative analyses are possible for the case presented for Yucca Mountain, the evidence (data) used would be the same and the conclusions would not be expected to drastically change. Other studies might develop a different rationale or select other past climates resulting in a different future climate analog. Other alternative approaches could include simulation of climate over the 10,000-year period; however, this modeling extrapolation is well beyond the bounds of current scientific practice and would not provide results with better confidence. A corroborative alternative approach may be found in ''Future Climate Analysis-10,000 Years to 1,000,000 Years After Present'' (Sharpe 2003 [DIRS 161591]). The current revision of this report is prepared in accordance with ''Technical Work Plan for: Unsaturated Zone Flow Analysis and Model Report Integration'' (BSC 2004 [DIRS 169654]).

  13. Climate Change, Drought & Environment

    Broader source: Energy.gov [DOE]

    Afternoon Plenary Session: Current Trends in the Advanced Bioindustry Climate Change, Drought, and Environment—Michael Champ, Executive Director, The Sustainable Water Challenge

  14. Climate Change Webinar Series

    Broader source: Energy.gov [DOE]

    Experts will provide findings from the Quadrennial Energy Review (QER) and outline federal energy policy objectives, proposals, and actions as they relate to climate change and resilience for...

  15. Protecting climate with forests.

    E-Print Network [OSTI]

    2008-01-01

    much more than carbon sequestration does, and often in abiophysics, carbon sequestration, climate change, climatethe accompanying carbon sequestration does—and sometimes in

  16. Argonne OutLoud: "Climate Change: Fact, Fiction and What You Can Do"

    ScienceCinema (OSTI)

    Sisterson, Douglas

    2015-02-19

    Research meteorologist Doug Sisterson discusses climate change and the cutting-edge research taking place at Argonne as well as collaborative research with other institutions, including the University of Chicago.

  17. Shan Sun Rainer Bleck Multi-century simulations with the coupled GISSHYCOM climate model

    E-Print Network [OSTI]

    Shan Sun Æ Rainer Bleck Multi-century simulations with the coupled GISS­HYCOM climate model models. Diversity in model design is one of the very few S. Sun (&) NASA Goddard Institute for Space

  18. Probabilistic projections of 21st century climate change over Northern Eurasia

    E-Print Network [OSTI]

    Monier, Erwan

    We present probabilistic projections of 21st century climate change over Northern Eurasia using the Massachusetts Institute of Technology (MIT) Integrated Global System Model (IGSM), an integrated assessment model that ...

  19. Probabilistic Projections of 21st Century Climate Change over Northern Eurasia

    E-Print Network [OSTI]

    Monier, Erwan

    2013-07-18

    We present probabilistic projections of 21st century climate change over Northern Eurasia using the Massachusetts Institute of Technology (MIT) Integrated Global System Model (IGSM), an integrated assessment model that ...

  20. Center for Transportation Studies Transportation Seminar Series Energy Technology and Climate

    E-Print Network [OSTI]

    Bertini, Robert L.

    Center for Transportation Studies Transportation Seminar Series Energy Technology and Climate Institute of Technology Friday, November 14, 2008 at 12:00 pm. Room 204, Distance Learning Center Wing

  1. OIL & GAS INSTITUTE Introduction

    E-Print Network [OSTI]

    Strathclyde, University of

    OIL & GAS INSTITUTE CONTENTS Introduction Asset Integrity Underpinning Capabilities 2 4 4 6 8 9 10 COMPETITIVENESS UNIVERSITY of STRATHCLYDE OIL & GAS INSTITUTE OIL & GAS EXPERTISE AND PARTNERSHIPS #12;1 The launch of the Strathclyde Oil & Gas Institute represents an important step forward for the University

  2. The National Cancer Institute,

    E-Print Network [OSTI]

    The National Cancer Institute, International Cancer Information Center Bldg. 82, Rm 123 Bethesda, MD 20892 The National Cancer Institute (NCI) is part of the Federal Government. NCI coordinates the government's cancer research program. It is the largest of the 17 biomedical research institutes and centers

  3. Closing Keynote Presentation on the Genomics of Energy and the Environment (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Benner, Stephen [Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology] [Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology

    2012-03-22

    Steve Benner, a distinguished chemist at the Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology, provides the closing keynote address for the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

  4. Closing Keynote Presentation on the Genomics of Energy and the Environment (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Benner, Stephen [Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology

    2013-01-22

    Steve Benner, a distinguished chemist at the Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology, provides the closing keynote address for the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

  5. 1DANGEROUS CLIMATE CHANGE IN BRAZIL Dangerous Climate

    E-Print Network [OSTI]

    1DANGEROUS CLIMATE CHANGE IN BRAZIL Dangerous Climate A BrAzil-UK AnAlysis of ClimAte ChAnge And deforestAtion impACts in the AmAzon Change in Brazil #12;3DANGEROUS CLIMATE CHANGE IN BRAZIL April 2011Alysis of ClimAte ChAnge And deforestAtion impACts in the AmAzon Change in Brazil #12;4 DANGEROUS CLIMATE CHANGE

  6. ClimateChangeLIVE Webcast: Join the Climate Conversation

    Broader source: Energy.gov [DOE]

    Join ClimateChangeLIVE's webcast, bringing together students and climate experts for a discussion about climate change and what students and classes around the country are doing to be part of the climate solution. Students will be able to interact with climate scientists and experts online through Facebook and Twitter. A GreenWorks! grant will be offered to help schools with climate action projects.

  7. FREEMAN SPOGLI INSTITUTE FOR INTERNATIONAL STUDIES PROGRAM ON ENERGY AND

    E-Print Network [OSTI]

    Sheldon, Nathan D.

    Development (PESD). Gang leads PESD's research on China, focusing on China's energy and climate changeFREEMAN SPOGLI INSTITUTE FOR INTERNATIONAL STUDIES PROGRAM ON ENERGY AND SUSTAINABLE DEVELOPMENT-POWER BASES IN CHINA DR. HUAICHUAN RUI, RICHARD K. MORSE, AND GANG HE Photo credit: Reuters #12;About

  8. School of Earth and Atmospheric Sciences Georgia Institute of Technology

    E-Print Network [OSTI]

    Wang, Yuhang

    in atmospheric chemistry/air quality and climate and a growing reputation in oceanography, geophysicsSchool of Earth and Atmospheric Sciences Georgia Institute of Technology Strategic Plan March 1 opportunities. Vision The vision of the School of Earth and Atmospheric Sciences is: To lead in innovative

  9. Gene Action and Cellular Function in Parasitic Protozoa Genomics and post-genomics in parasitology: genome babble or

    E-Print Network [OSTI]

    Schnaufer, Achim

    Gene Action and Cellular Function in Parasitic Protozoa Genomics and post-genomics in parasitology: genome babble or a real opportunity? K. Gull1 School of Biological Sciences, University of Manchester, 2.205 Stopford Building, Oxford Road, Manchester M13 9PT, U.K. Abstract The genome projects represent one

  10. Global air quality and climate

    E-Print Network [OSTI]

    2012-01-01

    Evaluation of Chemistry- Climate Models 5, 2010. 320 S. Wu,and R. Van Dorland, in Climate Change 2007: The PhysicalInter- governmental Panel on Climate Change, ed. D. Qin, M.

  11. Climate Change at Annual Timescales

    E-Print Network [OSTI]

    Stine, Alexander Robin

    2010-01-01

    1900–93, Journal of Climate, 10 (5), 1004–1020, 1997. Zhou,University of East Anglia’s Climate Research Unit (Jones etand those from WCRP “Climate of the Twentieth Century”

  12. Climate Change and Conceptual Change

    E-Print Network [OSTI]

    Clark, David Joseph

    2013-01-01

    1.1.2 The Stark Reality of Climate Change . . . . . . . .1.2 Climate Change as a BehavioralEducation for Climate Change . . . . 1.4.1 The Numerically

  13. Climate Change and National Security

    E-Print Network [OSTI]

    Alyson, Fleming; Summer, Kelly; Summer, Martin; Lauren, Franck; Jonathan, Mark

    2015-01-01

    for the impacts of climate change on national security. Pagea warming world. Page 11 “Climate change acts as a threatand the Threat of Climate Change,” The CNA Corporation, 2007

  14. Climate Action Plan 2009 Sustainability

    E-Print Network [OSTI]

    Capogna, Luca

    Climate Action Plan September 2009 Sustainability Council This plan outlines methods by which. This document is publicly available at http://sustainability.uark.edu. #12;2 University of Arkansas Climate....................................................................................................................................7 Climate Action Plan Committee

  15. book review: Climate change mapped

    E-Print Network [OSTI]

    Shanahan, Mike

    2012-01-01

    of millions 2 .   Climate change is a moving target and introductions  to  climate change’, the Atlas stands out media reporting on climate change.   Cambridge University 

  16. Climate Change at Annual Timescales

    E-Print Network [OSTI]

    Stine, Alexander Robin

    2010-01-01

    carbon cycling to global climate change, Nature, 393 (6682),2005. Meehl, G. , et al. , Climate Change 2007: The PhysicalIntergovernmental Panel on Climate Change, chap. 10. Global

  17. MAPPING CLIMATE CHANGE EXPOSURES, VULNERABILITIES,

    E-Print Network [OSTI]

    MAPPING CLIMATE CHANGE EXPOSURES, VULNERABILITIES, AND ADAPTATION TO PUBLIC HEALTH RISKS's California Climate Change Center JULY 2012 CEC5002012041 Prepared for: California Energy Commission of California. #12; ii ABSTRACT This study reviewed first available frameworks for climate change adaptation

  18. Massachusetts Takes On Climate Change

    E-Print Network [OSTI]

    Kimmell, Ken; Laurie, Burt

    2009-01-01

    to promote new technologies to fight climate change as theON CLIMATE CHANGE dard is a market-based, technology-neutraland technologies. 9. Facilities will calculate emissions using The Climate

  19. A mechanism for sun-climate connection Sultan Hameed and Jae N. Lee

    E-Print Network [OSTI]

    Hameed, Sultan

    ]. Systematic changes in the distribution of ozone result in changes in the temperature and pressureA mechanism for sun-climate connection Sultan Hameed and Jae N. Lee Institute for Terrestrial in the sun's energy output during the solar cycle can cause changes in weather and climate have been a puzzle

  20. Modeling Climate and Production-related Impacts on Ice-core Beryllium-10

    E-Print Network [OSTI]

    Modeling Climate and Production-related Impacts on Ice-core Beryllium-10 Christy Veeder Submitted Modeling Climate and Production-related Impacts on Ice-core Beryllium-10 Christy Veeder I use the Goddard Institute for Space Studies ModelE general circulation model to ex- amine the how beryllium-10, a cosmogenic

  1. Introduction to Metagenomics at DOE JGI: Program Overview and Program Informatics (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    ScienceCinema (OSTI)

    Tringe, Susannah [DOE JGI

    2013-01-22

    Susannah Tringe of the DOE Joint Genome Institute talks about the Program Overview and Program Informatics at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011

  2. Global Climate Autumn 2014

    E-Print Network [OSTI]

    Brown, Sally

    conservation concern: mitigation - reduce emissions of green house gases Climate Change and Wildlife · Pattern house gases · Secondary concern: adaptation - how do we lessen ongoing impacts of climate change - protect these areas - facilitate animal movement to these areas (corridors) #12;11/30/14 4 Fordham et al

  3. Climate change risk and response

    E-Print Network [OSTI]

    Kahrl, Fredrich; Roland-Holst, David

    2008-01-01

    Climate Change and Electricity Demand: Applying the NewClimate Change and Electricity Demand in California. ”Extreme Heat, and Electricity Demand in California. ”

  4. Climate Change/Paleoclimate & Geochronology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Climate ChangePaleoclimate & Geochronology "The instrumental record is generally considered not to be long enough to give a complete picture of climate variability... It is...

  5. Genome Biology 2004, 5:R56 commentreviewsreportsdepositedresearchrefereedresearchinteractionsinformation

    E-Print Network [OSTI]

    . Although various genomic datasets are rele-vant to this issue, each dataset provides relatively weak

  6. A Million Cancer Genome Warehouse David Haussler

    E-Print Network [OSTI]

    McAuliffe, Jon

    Warehouse Regional Warehouses Design and Cost to Build and Operate a Million Cancer Genome Warehouse CAPEX

  7. Doug Brutlag 2015 Genomics, Bioinformatics & Medicine

    E-Print Network [OSTI]

    Brutlag, Doug

    in -Amylase Gene Tandem Repeat Arrays Sharp, Cheng & Eichler, Annu. Rev. Genomics Hum. Genet. 2006. 7

  8. A Statistical Framework for Spatial Comparative Genomics

    E-Print Network [OSTI]

    A Statistical Framework for Spatial Comparative Genomics Rose Hoberman May 2007 CMU-CS-07, or the U.S. Government. #12;Keywords: spatial comparative genomics, comparative genomics, gene clusters, max-gap clusters, gene teams, whole genome duplication, paralogons, synteny, ortholog detection #12

  9. Genomic Aspects of Research Involving Polyploid Plants

    SciTech Connect (OSTI)

    Yang, Xiaohan [ORNL; Ye, Chuyu [ORNL; Tschaplinski, Timothy J [ORNL; Wullschleger, Stan D [ORNL; Tuskan, Gerald A [ORNL

    2011-01-01

    Almost all extant plant species have spontaneously doubled their genomes at least once in their evolutionary histories, resulting in polyploidy which provided a rich genomic resource for evolutionary processes. Moreover, superior polyploid clones have been created during the process of crop domestication. Polyploid plants generated by evolutionary processes and/or crop domestication have been the intentional or serendipitous focus of research dealing with the dynamics and consequences of genome evolution. One of the new trends in genomics research is to create synthetic polyploid plants which provide materials for studying the initial genomic changes/responses immediately after polyploid formation. Polyploid plants are also used in functional genomics research to study gene expression in a complex genomic background. In this review, we summarize the recent progress in genomics research involving ancient, young, and synthetic polyploid plants, with a focus on genome size evolution, genomics diversity, genomic rearrangement, genetic and epigenetic changes in duplicated genes, gene discovery, and comparative genomics. Implications on plant sciences including evolution, functional genomics, and plant breeding are presented. It is anticipated that polyploids will be a regular subject of genomics research in the foreseeable future as the rapid advances in DNA sequencing technology create unprecedented opportunities for discovering and monitoring genomic and transcriptomic changes in polyploid plants. The fast accumulation of knowledge on polyploid formation, maintenance, and divergence at whole-genome and subgenome levels will not only help plant biologists understand how plants have evolved and diversified, but also assist plant breeders in designing new strategies for crop improvement.

  10. Genomics and ornithology Scott V. Edwards

    E-Print Network [OSTI]

    Edwards, Scott

    REVIEW Genomics and ornithology Scott V. Edwards Received: 23 September 2007 / Accepted: 27 Genomics is revolutionizing ornithology in the same ways it is reinvigorating other biological disciplines. In this review, I will highlight applications of genomics and genomics technologies to the study of the ecology

  11. Shotgun coverage of human genome computing

    E-Print Network [OSTI]

    Eddy, Sean

    take about 1.5 million pages. The Human Genome Project would not be possible if our revolution were-author collection of chapters on the various uses of computing in the Human Genome Project. Peculiarly absent fromShotgun coverage of human genome computing Human Genome Computing, Second Edition edited by Martin

  12. Doug Brutlag 2015 Sequencing the Human Genome

    E-Print Network [OSTI]

    Brutlag, Doug

    Project: Should we do it? · Service, R. F. (2001). The human genome: Objection #1: big biology is bad://www.elec-intro.com/m13-cloning #12;© Doug Brutlag 2015 Public Human Genome Project Strategy Published in Nature 15 The Human Genome Project: How should we do it? · Weber, J. L., & Myers, E. W. (1997). Human whole-genome

  13. Assignment of Orthologous Genes via Genome Rearrangement

    E-Print Network [OSTI]

    Lonardi, Stefano

    Assignment of Orthologous Genes via Genome Rearrangement Xin Chen, Jie Zheng, Zheng Fu, Peng Nan of genomes is a fundamental and challenging problem in comparative genomics. Existing methods that assign sequence similarity and evolutionary events at a genome level, where orthologous genes are assumed

  14. Pseudo Boolean Programming for Partially Ordered Genomes

    E-Print Network [OSTI]

    Fertin, Guillaume

    Pseudo Boolean Programming for Partially Ordered Genomes Sébastien Angibaud1 , Guillaume Fertin1.Angibaud,Guillaume.Fertin}@univ-nantes.fr, thevenin@lri.fr, vialette@univ-mlv.fr Abstract. Comparing genomes of different species is a crucial problem in comparative genomics. Different measures have been proposed to com- pare two genomes: number of common

  15. Extreme Genomics By Scouring the Genomes of 50 HIV-Resistant People, Study

    E-Print Network [OSTI]

    Dolbow, John

    Extreme Genomics By Scouring the Genomes of 50 HIV-Resistant People, Study Takes Aim at Rare Gene Genome Variation, and his colleagues think that the complete genome sequences of those fortunate few against the viral strain that usually infects humans. That's because the CCR5 protein is Extreme Genomics

  16. Chapter 14: Genome Assembly and Annotation Process Annotation of other genomes

    E-Print Network [OSTI]

    Levin, Judith G.

    Chapter 14: Genome Assembly and Annotation Process Paul Kitts Summary Box 1 Annotation of other genomes NCBI may assemble a genome prior to annotation, add annotations to a genome assembled elsewhere, or simply process an annotated genome to produce RefSeqs and maps for display in Map Viewer (Chapter 20

  17. The Genome Database Organism-centered listing of available genomic sequence records and projects

    E-Print Network [OSTI]

    Levin, Judith G.

    The Genome Database Organism-centered listing of available genomic sequence records and projects http://www.ncbi.nlm.nih.gov/genome National Center for Biotechnology Information · National Library | NCBI Genome | Last Update August 19, 2013 Contact: info@ncbi.nlm.nih.gov Scope Since 2011, the Genome

  18. Genomics and vertebrate adaptive radiation: a celebration of the first cichlid genome

    E-Print Network [OSTI]

    Renn, Susan C.P.

    Genomics and vertebrate adaptive radiation: a celebration of the first cichlid genome C. Darrin ``Genomics and Vertebrate Adaptive Radiation: A Celebration of the First Cichlid Genome'' was held the central topic was the genomics of adaptive radiation in cichlid fishes, the symposium integrated speakers

  19. Growth Temperature and Genome Size in Bacteria Are Negatively Correlated, Suggesting Genomic Streamlining

    E-Print Network [OSTI]

    Wagner, Andreas

    Growth Temperature and Genome Size in Bacteria Are Negatively Correlated, Suggesting Genomic.wagner@ieu.uzh.ch; nsabath@gmail.com. Accepted: March 25, 2013 Abstract Prokaryotic genomes are small and compact. Either this feature is caused by neutral evolution or by natural selection favoring small genomes--genome streamlining

  20. Human genome. 1993 Program report

    SciTech Connect (OSTI)

    Not Available

    1994-03-01

    The purpose of this report is to update the Human Genome 1991-92 Program Report and provide new information on the DOE genome program to researchers, program managers, other government agencies, and the interested public. This FY 1993 supplement includes abstracts of 60 new or renewed projects and listings of 112 continuing and 28 completed projects. These two reports, taken together, present the most complete published view of the DOE Human Genome Program through FY 1993. Research is progressing rapidly toward 15-year goals of mapping and sequencing the DNA of each of the 24 different human chromosomes.

  1. Indian Institute of Technology Bombay INDIAN INSTITUTE OF TECHNOLOGY BOMBAY

    E-Print Network [OSTI]

    Narayanan, H.

    Indian Institute of Technology Bombay INDIAN INSTITUTE OF TECHNOLOGY BOMBAY INVITATION Description of work Estimated cost (1) (2) (3) 1 Construction of Institutional/Residential buildings, external development, HVAC, Elevators etc. for Indian Institute of Technology Bombay, at the campus

  2. Challenges in Whole-Genome Annotation of Pyrosequenced Eukaryotic Genomes

    SciTech Connect (OSTI)

    Kuo, Alan; Grigoriev, Igor

    2009-04-17

    Pyrosequencing technologies such as 454/Roche and Solexa/Illumina vastly lower the cost of nucleotide sequencing compared to the traditional Sanger method, and thus promise to greatly expand the number of sequenced eukaryotic genomes. However, the new technologies also bring new challenges such as shorter reads and new kinds and higher rates of sequencing errors, which complicate genome assembly and gene prediction. At JGI we are deploying 454 technology for the sequencing and assembly of ever-larger eukaryotic genomes. Here we describe our first whole-genome annotation of a purely 454-sequenced fungal genome that is larger than a yeast (>30 Mbp). The pezizomycotine (filamentous ascomycote) Aspergillus carbonarius belongs to the Aspergillus section Nigri species complex, members of which are significant as platforms for bioenergy and bioindustrial technology, as members of soil microbial communities and players in the global carbon cycle, and as agricultural toxigens. Application of a modified version of the standard JGI Annotation Pipeline has so far predicted ~;;10k genes. ~;;12percent of these preliminary annotations suffer a potential frameshift error, which is somewhat higher than the ~;;9percent rate in the Sanger-sequenced and conventionally assembled and annotated genome of fellow Aspergillus section Nigri member A. niger. Also,>90percent of A. niger genes have potential homologs in the A. carbonarius preliminary annotation. Weconclude, and with further annotation and comparative analysis expect to confirm, that 454 sequencing strategies provide a promising substrate for annotation of modestly sized eukaryotic genomes. We will also present results of annotation of a number of other pyrosequenced fungal genomes of bioenergy interest.

  3. Low Stream Flows: Making Decisions in an Uncertain Climate

    E-Print Network [OSTI]

    and Oceans Canada) through CRMI (Cooperative Resource Management Institute), CCIRC (Climate Change Impact for the Degree of Master of Resource Management in the School of Resource and Environmental Management Faculty of Resource Management Report No. 528 Title of Thesis: Low Stream Flows: Making Decisions in an Uncertain

  4. STOCHASTIC MODELING OF HURRICANE DAMAGE UNDER CLIMATE CHANGE

    E-Print Network [OSTI]

    Katz, Richard

    STOCHASTIC MODELING OF HURRICANE DAMAGE UNDER CLIMATE CHANGE Rick Katz Institute for Study from Hurricanes (2) Stochastic Model for Damage (3) Effects of El Niño (4) Trends in Extreme Hurricanes (5) Unresolved Issues #12;(1) Economic Damage from Hurricanes · Data -- Pielke and Landsea (1998) Web

  5. Institutional Research & Development Reports | National Nuclear...

    National Nuclear Security Administration (NNSA)

    Advanced Simulation and Computing and Institutional R&D Programs Institutional Research & Development Institutional Research & Development Reports Institutional Research &...

  6. Determine Institutional Change Sustainability Goals | Department...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Institutional Change Determine Institutional Change Sustainability Goals Determine Institutional Change Sustainability Goals Institutional Change Continuous Improvement Cycle...

  7. Institutional Change for Sustainability Contacts | Department...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Institutional Change Institutional Change for Sustainability Contacts Institutional Change for Sustainability Contacts For more information about institutional change for...

  8. Synthetic Genomics: Options for Governance

    E-Print Network [OSTI]

    Garfinkel, Michele

    2007-10-17

    Gene and genome synthesis, that is, constructing long stretches of DNA from constituent chemicals, provides scientists with new and unparalleled capabilities both for understanding biology and for using it for beneficial ...

  9. Big Bear Solar Observatory -New Jersey Institute of Technology 2005 Greetings

    E-Print Network [OSTI]

    Big Bear Solar Observatory - New Jersey Institute of Technology 2005 Greetings The Center for Solar-Terrestrial Reasearch (CSTR) at New Jersey Institute of Technology operates Big Bear Solar Observatory (BBSO), which provides a unique and precise measure of the Earth's reflectance (a critical climate parameter since

  10. Massachusetts Institute of Technology Office of the President Building 3-208

    E-Print Network [OSTI]

    Reif, Rafael

    Massachusetts Institute of Technology Office of the President Building 3-208 77 Massachusetts served as the 17th President of the Massachusetts Institute of Technology (MIT) since July 2012. In his initiative to drive progress towards solutions around environment, climate and how to construct a sustainable

  11. Climate ChangeClimate Change and Runoff Managementand Runoff Management

    E-Print Network [OSTI]

    Sheridan, Jennifer

    Climate ChangeClimate Change and Runoff Managementand Runoff Management in Wisconsinin Wisconsin NASECA February 3, 2011 David S. Liebl #12;Overview · Understanding climate change · Wisconsin's changing Vegetation indicators #12;Indicators of a changing climate J. Magnuson Source: IPCC 2007 Potter, et al

  12. The role of solar absorption in climate and climate change

    E-Print Network [OSTI]

    1 The role of solar absorption in climate and climate change William Collins UC Berkeley · Changes to surface and atmosphere by aerosols · Climate sensitivity to changes in aerosols and CO2 Research Boulder, Colorado, USA #12;2 Prior Research on Absorption and Climate Field Experiments: · Central

  13. Climate Research in Society 1 CLIMATE SCIENCE IN SOCIETY

    E-Print Network [OSTI]

    von Storch, Hans

    Climate Research in Society 1 CLIMATE SCIENCE IN SOCIETY The situation is post-normal The situation is as follows: Man-made climate change is real, but we are still arguing what it really consists in and how temperature. Restricting emissions will reduce or slow down future climate change. Although everybody agrees

  14. Climate and Sockeye Salmon Climate effects on growth, phenology, and

    E-Print Network [OSTI]

    Hinch, Scott G.

    Climate and Sockeye Salmon Climate effects on growth, phenology, and survival of sockeye salmon in peer-reviewed studies that link sockeye salmon growth, phenology, and survival to climate variables 2. State the known knowledge in regards to effects of climate variables on growth, phenology, and survival

  15. Climate simulators and climate projections Jonathan Rougier1

    E-Print Network [OSTI]

    Dixon, Peter

    Climate simulators and climate projections Jonathan Rougier1 Department of Mathematics University;Abstract We provide a statistical interpretation of current practice in climate mod- elling. This includes: definitions for weather and climate; clarifying the relationship between simulator output and simulator

  16. Climate Change: Conflict, Security and Vulnerability Professor of Climate Change

    E-Print Network [OSTI]

    Hulme, Mike

    Climate Change: Conflict, Security and Vulnerability Mike Hulme Professor of Climate Change Science, Society and Sustainability Group School of Environmental Sciences Rethinking Climate Change, Conflict and Security University of Sussex, 18-19 October 2012 1 #12;Weather and climate ... vulnerability and security

  17. UNCLASSIFIED Institute for Materials ...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Antonia Antoniou Georgia Institute of Technology, Atlanta, Georgia Mechanical Behavior of Hierarchical Nanoporous Metals Thursday, August 27, 2015 1:30 - 2:30pm MSL Auditorium...

  18. Edison Electric Institute Update

    Broader source: Energy.gov [DOE]

    Presentation—given at the Fall 2011 Federal Utility Partnership Working Group (FUPWG) meeting—discusses the Edison Electric Institute (EEI) and the current electricity landscape.

  19. UNCLASSIFIED Institute for Materials ...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Gabriel Aeppli Head of the Synchrotron and Nanotechnology Department Paul Scherrer Institute, Switzerland Accelerator-based Light Sources for the Future Wednesday, August 12, 2015...

  20. UNCLASSIFIED Institute for Materials ...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Dr. Jol Mesot Director, Paul Scherrer Institute, Switzerland Probing Excitations in Strongly Correlated Electron Systems: Recent Highlights Obtained at the Large-Scale Facilities...

  1. UNCLASSIFIED Institute for Materials ...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Head of the Synchrotron and Nanotechnology Department Paul Scherrer Institute, Switzerland Accelerator-based Light Sources for the Future Wednesday, August 12, 2015 2:00 to...

  2. Genomic neighbourhood and the regulation of gene expression Genomic neighbourhood and transcriptional regulation

    E-Print Network [OSTI]

    Babu, M. Madan

    Genomic neighbourhood and the regulation of gene expression Genomic neighbourhood and transcriptional regulation Subhajyoti De and M. Madan Babu MRC Laboratory of Molecular Biology, Hills Road..................................................................................................................................................................................1 2. Genomic neighbourhood and its influence on gene regulation

  3. Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches

    E-Print Network [OSTI]

    Chandonia, John-Marc; Brenner, Steven E.

    2004-01-01

    SK, Bonanno JB. Structural genomics. Methods Biochem AnalMizuguchi K. Structural genomics: an overview. Prog BiophysSE. A tour of structural genomics. Nat Rev Genet 2001;2(10):

  4. Amplification of Genomic DNA from Single Cells using Multiple Displacement Amplification

    SciTech Connect (OSTI)

    Lasken, Roger [J. Craig Venter Institute

    2010-06-04

    Roger Lasken of the J. Craig Venter Institute discusses the combined use of single cell genomics and metagenomics as well as methods for single-cell sequencing on June 4, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM

  5. Genome Analysis Serial Analysis of Gene Expression Study of a Hybrid

    E-Print Network [OSTI]

    Kansas, University of

    for Functional Genomics, Evanston Northwestern Healthcare Research Institute, Northwestern University, Evanston our initial functional analyses on a subset of the data that are supported by full-length c crops for human consumption, providing staple food for more than one-half of the world's population

  6. Complete Genome Sequence of Le Blanc Virus, a Third Caenorhabditis Nematode-Infecting Virus

    E-Print Network [OSTI]

    Wang, David

    Complete Genome Sequence of Le Blanc Virus, a Third Caenorhabditis Nematode-Infecting Virus Carl J,a and Institute of Biology of the Ecole Normale Supérieure (IBENS), Paris, Franceb Orsay virus and Santeuil virus, the first known viruses capable of naturally infecting the nematodes Caenorhabditis elegans

  7. Glass Sponges and Bilaterian Animals Share Derived Mitochondrial Genomic Features: A Common Ancestry or Parallel Evolution?

    E-Print Network [OSTI]

    Lavrov, Dennis V.

    Glass Sponges and Bilaterian Animals Share Derived Mitochondrial Genomic Features: A Common Oceanographic Institution, Fort Pierce, Florida Glass sponges (Hexactinellida) are a group of deep-water benthic glass sponges and bilaterian animals, including an Arg / Ser change in the genetic code

  8. Ecological Genomics of Nematode Community Interactions: Model and Non-model Approaches

    E-Print Network [OSTI]

    Herman, Mike

    Science Board in the United States issued a report that stated: Human activities are transforming. Abbreviations GO Gene ontology TD50 Time to death for 50% of a population M.A. Herman Ecological Genomics Institute, Kansas State University, 266 Chalmers Hall, Manhattan, KS, USA; Division of Biology, Kansas State

  9. 1DANGEROUS CLIMATE CHANGE IN BRAZIL Dangerous Climate

    E-Print Network [OSTI]

    1DANGEROUS CLIMATE CHANGE IN BRAZIL Dangerous Climate A BrAzil-UK AnAlysis of ClimAte ChAnge And deforestAtion impACts in the AmAzon Change in Brazil #12;3DANGEROUS CLIMATE CHANGE IN BRAZIL April 2011 Pesquisas Espaciais (INPE), Brazil, and the Met Office Hadley Centre, UK Dangerous Climate A BrAzil-UK An

  10. IMPROVING FUTURE CLIMATE PREDICTION USING

    E-Print Network [OSTI]

    Henderson, Gideon

    IMPROVING FUTURE CLIMATE PREDICTION USING PALAEOCLIMATE DATA A community White Paper for consideration by the Natural Environment Research Council, UK #12;#12;IMPROVING FUTURE CLIMATE PREDICTION USING Climate Symposium 2008 - Earth's Climate: Past, Present and Future", convened by H. Elderfield, M. Bickle

  11. Climate and the Tropical Atlantic

    E-Print Network [OSTI]

    Climate and the Tropical Atlantic Presenter: Rick Lumpkin AOML Program Review 4-6 March 2014 What drives Tropical Atlantic climate changes and what are their impacts? #12;AOML Program Review2 Climate and the Tropical Atlantic Why this matters to NOAA and to society: Climate variability in the Tropical Atlantic

  12. Climate change: Flawed science, or

    E-Print Network [OSTI]

    Climate change: Fraud, Flawed science, or Fundamental dilemma? Prof Roy Thompson, FRSE #12;Fraud innovation Dilemma... Vicious Circle #12;1. Climate Change - Weather vs. climate - The greenhouse effect - Past climates 2. Impacts - Plants & animals - The seasons 3. Fundamental dilemma - Overpopulation

  13. Information Visualization in Climate Research

    E-Print Network [OSTI]

    Tominski, Christian

    relevant association between time series at vertices · Successes: El-Nino Southern Oscillation, "Climate

  14. Understanding and Attributing Climate Change

    E-Print Network [OSTI]

    Box, Jason E.

    9 Understanding and Attributing Climate Change Coordinating Lead Authors: Gabriele C. Hegerl (USA. Nicholls, J.E. Penner and P.A. Stott, 2007: Under- standing and Attributing Climate Change. In: Climate of the Intergovernmental Panel on Climate Change [Solomon, S., D. Qin, M. Manning, Z. Chen, M. Marquis, K.B. Averyt, M

  15. Biological Impacts of Climate Change

    E-Print Network [OSTI]

    McCarty, John P.

    Biological Impacts of Climate Change John P McCarty, University of Nebraska at Omaha, Omaha, NE and reproduction depend on how well adapted individuals are to local climate patterns. Climate change can disrupt subsequent impacts on populations or species' distributions across geographic regions. Climate change may

  16. Potential Impacts of CLIMATE CHANGE

    E-Print Network [OSTI]

    Sheridan, Jennifer

    Potential Impacts of CLIMATE CHANGE on U.S. Transportation Potential Impacts of CLIMATE CHANGE on U.S. Transportation TRANSPORTATION RESEARCH BOARD SPECIAL REPORT 290 #12;#12;Committee on Climate Change and U Washington, D.C. 2008 www.TRB.org Potential Impacts of CLIMATE CHANGE on U.S. Transportation TRANSPORTATION

  17. Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

    E-Print Network [OSTI]

    2011-01-01

    Potnis et al. : Comparative genomics reveals diversity amongtomato and pepper. BMC Genomics Submit your next manuscriptpv. syringae Potnis et al. BMC Genomics 2011, 12:146 http://

  18. Genomics of emerging infectious disease: A PLoS collection.

    E-Print Network [OSTI]

    Eisen, Jonathan A; MacCallum, Catriona J

    2009-01-01

    Origins and evolutionary genomics of the 2009 swine-originan Infectious Diseases Genomics Project predict and preventRavel J (2009) The role of genomics in the identification,

  19. Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum

    E-Print Network [OSTI]

    Ditty, Jayna L.

    2012-01-01

    Page Incorporating Genomics and Bioinformatics across the2007) Discovering Genomics, Proteomics, and Bioinformatics,2003) Public access for teaching genomics, proteomics, and

  20. TOPSAN: a collaborative annotation environment for structural genomics.

    E-Print Network [OSTI]

    Weekes, Dana; Krishna, S; Bakolitsa, Constantina; Wilson, Ian A; Godzik, Adam; Wooley, John

    2010-01-01

    environment for structural genomics Dana Weekes 1† , S Srihigh-throughput structural genomics centers, despite theirbeing determined by structural genomics centers and high-

  1. MicrobesOnline: an integrated portal for comparative functional genomics

    E-Print Network [OSTI]

    Joachimiak, Marcin P.

    2014-01-01

    comparative functional genomics Marcin P. Joachimiak 1,2 ,for comparative functional genomics of bacteria and archaea.publicly avail- able functional genomics data from published

  2. Validation in Genomics: CpG Island Methylation Revisited

    E-Print Network [OSTI]

    Segal, Mark R

    2006-01-01

    analysis. In: Functional Genomics: Methods and Protocols, M.Segal: Validation in Genomics: CpG Island Methylationpackage and applications to genomics. Bioinformatics and

  3. Dissection of Plant Defense Mechanisms Using Chemical and Molecular Genomics

    E-Print Network [OSTI]

    Rodriguez-Salus, Melinda Sue

    2012-01-01

    of auxins by a chemical genomics approach." Journal ofadvances in chemical genomics." Current Medicinal Chemistrymolecular and chemical genomics." Phytopathology 97(7): S58-

  4. Microbes Online: an integrated portal for comparative functional genomics

    E-Print Network [OSTI]

    Arkin, Adam P.

    2014-01-01

    comparative functional genomics of bacteria, archaea, fungifor comparative functional genomics Paramvir S. Dehal 1,2* (and Environmental Research, Genomics:GTL program through

  5. The Human Genome Project and its Social Implications

    E-Print Network [OSTI]

    Meyer, Paul B

    1990-01-01

    The Human Genome Project and its Social Implications By Paulit is about the Human Genome Project. In a sense this isheredity. The Human Genome Project is concerned essentially

  6. Genome-scale reconstruction and analysis of eukaryotic metabolic networks

    E-Print Network [OSTI]

    Hurlen, Natalie Christine

    2006-01-01

    803. Leja, D. , Human Genome Project Timeline, 38-72.jpg,p. Illustration of Human Genome Project Timeline. Varki,Human Genome Project. ..

  7. Global climate change: Social and economic research issues

    SciTech Connect (OSTI)

    Rice, M.; Snow, J.; Jacobson, H.

    1992-05-01

    This workshop was designed to bring together a group of scholars, primarily from the social sciences, to explore research that might help in dealing with global climate change. To illustrate the state of present understanding, it seemed useful to focus this workshop on three broad questions that are involved in coping with climate change. These are: (1) How can the anticipated economic costs and benefits of climate change be identified; (2) How can the impacts of climate change be adjusted to or avoided; (3) What previously studied models are available for institutional management of the global environment? The resulting discussions may (1) identify worthwhile avenues for further social science research, (2) help develop feedback for natural scientists about research information from this domain needed by social scientists, and (3) provide policymakers with the sort of relevant research information from the social science community that is currently available. Individual papers are processed separately for the database.

  8. A deeper look at climate change and national security.

    SciTech Connect (OSTI)

    Baker, Arnold Barry; Backus, George A.; Romig, Alton Dale, Jr.

    2010-03-01

    Climate change is a long-term process that will trigger a range of multi-dimensional demographic, economic, geopolitical, and national security issues with many unknowns and significant uncertainties. At first glance, climate-change-related national security dimensions seem far removed from today's major national security threats. Yet climate change has already set in motion forces that will require U.S. attention and preparedness. The extent and uncertainty associated with these situations necessitate a move away from conventional security practices, toward a small but flexible portfolio of assets to maintain U.S. interests. Thoughtful action is required now if we are to acquire the capabilities, tools, systems, and institutions needed to meet U.S. national security requirements as they evolve with the emerging stresses and shifts of climate change.

  9. Complete genome sequence of Allochromatium vinosum DSM 180T

    SciTech Connect (OSTI)

    Weissgerber, Thomas [Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn, Germany; Zigann, Renate [Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn, Germany; Bruce, David [Los Alamos National Laboratory (LANL); Chang, Yun-Juan [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Hauser, Loren John [ORNL; Jeffries, Cynthia [Oak Ridge National Laboratory (ORNL); Land, Miriam L [ORNL; Munk, Christine [U.S. Department of Energy, Joint Genome Institute; Tapia, Roxanne [Los Alamos National Laboratory (LANL); Dahl, Christiane [Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn, Germany

    2011-01-01

    Allochromatium vinosum formerly Chromatium vinosum is a mesophilic purple sulfur bacte- rium belonging to the family Chromatiaceae in the bacterial class Gammaproteobacteria. The genus Allochromatium contains currently five species. All members were isolated from fresh- water, brackish water or marine habitats and are predominately obligate phototrophs. Here we describe the features of the organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the Chromatiaceae within the purple sulfur bacteria thriving in globally occurring habitats. The 3,669,074 bp ge- nome with its 3,302 protein-coding and 64 RNA genes was sequenced within the Joint Ge- nome Institute Community Sequencing Program.

  10. PALEOCLIMATOLOGY Reconstructing Climates of

    E-Print Network [OSTI]

    Briffa, Keith

    recognized as an important source of chronological and climatic information. In Europe, stud- ies of tree growth were facilitated by the availability of wood from archeological sites, as well as from mod- ern

  11. Refining climate models

    ScienceCinema (OSTI)

    Warren, Jeff; Iversen, Colleen; Brooks, Jonathan; Ricciuto, Daniel

    2014-06-26

    Using dogwood trees, Oak Ridge National Laboratory researchers are gaining a better understanding of the role photosynthesis and respiration play in the atmospheric carbon dioxide cycle. Their findings will aid computer modelers in improving the accuracy of climate simulations.

  12. Climate Change Adaptation Planning

    Office of Energy Efficiency and Renewable Energy (EERE)

    This course provides an introduction to planning for climate change impacts, with examples of tribes that have been going through the adaptation planning process. The course is intended for tribal...

  13. Refining climate models

    SciTech Connect (OSTI)

    Warren, Jeff; Iversen, Colleen; Brooks, Jonathan; Ricciuto, Daniel

    2012-10-31

    Using dogwood trees, Oak Ridge National Laboratory researchers are gaining a better understanding of the role photosynthesis and respiration play in the atmospheric carbon dioxide cycle. Their findings will aid computer modelers in improving the accuracy of climate simulations.

  14. Universittsarchiv Mainz Physiologisches Institut

    E-Print Network [OSTI]

    ;Vorwort II Vorwort Das Physiologische Institut wurde 1946 mit der Berufung von Prof. Hans Schriever (1898-1979) einge- richtet. Der 1898 in Düsseldorf geborene Schriever promovierte 1921 in Bonn zum Dr. med. und 1922 wurde er 1939 zum ordentlichen Professor ernannt. Prof. Schriever leitete das Mainzer Institut bis zu

  15. Dependence of climate response on meridional structure of external thermal forcing

    E-Print Network [OSTI]

    Xie, Shang-Ping

    1 Dependence of climate response on meridional structure of external thermal forcing Sarah M. Kang* School of Urban and Environmental Engineering Ulsan National Institute of Science and Technology Shang Engineering Ulsan National Institute of Science and Technology UNIST-gil 50, Ulsan 689-798, Republic of Korea

  16. Addressing the Omics Data Explosion: a Comprehensive Reference Genome Representation and the Democratization of Comparative Genomics and Immunogenomics

    E-Print Network [OSTI]

    Nguyen, Ngan Kim

    2014-01-01

    Hubs: Web Accessible Browsers for Compar- ative Genomics 3.1Comparative Genomics Analyses . . . . . . . . . . . . . .browsers for comparative genomics” B.1 E. coli KO11FL 162099

  17. TOKYO INSTITUTE OF TECHNOLOGY TOKYO INSTITUTE OF TECHNOLOGY TOKYO INSTITUTE OF TECHNOLOGY

    E-Print Network [OSTI]

    #12;06 06 TOKYO INSTITUTE OF TECHNOLOGY 0201 CONTENTS 03 08 09 10 15 17 25 31 33 37 41 0201 08 23 TokyoTech #12;TOKYO INSTITUTE OF TECHNOLOGY TOKYO INSTITUTE OF TECHNOLOGY 0403 20 1 5 11 #12;TOKYO INSTITUTE OF TECHNOLOGY TOKYO INSTITUTE OF TECHNOLOGY 0605 4 3 2 5 5 4 3 #12;TOKYO INSTITUTE OF TECHNOLOGY

  18. The mouse genome informatics and the mouse genome database

    SciTech Connect (OSTI)

    Maltais, L.J.; Blackburn, R.E.; Bradt, D.W.

    1994-09-01

    The Mouse Genome Database (MGD) is a centralized, comprehensive database of the mouse genome that includes genetic mapping data, comparative mapping data, gene descriptions, mutant phenotype descriptions, strains and allelic polymorphism data, inbred strain characteristics, physical mapping data, and molecular probes and clones data. Data in MGD are obtained from the published literature and by electronic transfer from laboratories working on large backcross panels of mice. MGD provides tools that enable the user to search the database, retrieve data, generate reports, analyze data, annotate records, and build genetic maps. The Encyclopedia of the Mouse Genome provides a graphic user interface to mouse genome data. It consists of software tools including: LinkMap, a graphic display of genetic linkage maps with the ability to magnify regions of high locus density: CytoMap, a graphic display of cytogenetic maps showing banded chromosomes with cytogenetic locations of genes and chromosomal aberrations; CATS, a catalog searching tool for text retrieval of mouse locus descriptions. These software tools provide access to the following data sets: Chromosome Committee Reports, MIT Genome Center data, GBASE reports, Mouse Locus Catalog (MLC), and Mouse Cytogenetic Mapping Data. The MGD is available to the scientific community through the World Wide Web (WWW) and Gopher. In addition GBASE can be accessed via the Internet.

  19. Research project on CO{sub 2}-induced climate change. Annual progress report, March 1, 1994--February 28, 1995

    SciTech Connect (OSTI)

    Cess, R.D.; Hameed, S.

    1995-01-01

    This summarizes current progress in the research project at SUNY Stony Brook on CO2-induced climate change. Three tasks are described, corresponding to the task categories in the USDOE/PRC CAS cooperative project on climate change. Task 1, led by Dr. Robert Cess, concerns the intercomparison of CO2 related climatic warming in contemporary general circulation models. Task 2, directed by Dr. Sultan Hameed, looks at understanding the natural variability in climatic data and comparing its significant features between observations and model simulations. Task 3, also directed by Dr. Hameed focuses on analysis of historical climate data developed at the institute of Geography of the Chinese Academy of Sciences.

  20. Trichoderma: the genomics of opportunistic success

    E-Print Network [OSTI]

    Druzhinina, Irina S.

    2011-01-01

    Applied Biochemistry, Institute of Chemical Engineering 5and Applied Biochemistry, Institute of Chemical Engineering