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Sample records for gene copy numbers

  1. Copy Number and Gene Expression: Stochastic Modeling and Therapeutic Application 

    E-Print Network [OSTI]

    Hsu, Fang-Han

    2013-05-01

    (CNAs), which are known to be common mutations in genetic diseases, on steady- state gene expression values, time-course expression activities, and the e?ectiveness of targeted therapy. Assuming DNA copies operate as independent subsystems producing gene...

  2. Copyright 2000 by the Genetics Society of America Copy Number Lability and Evolutionary Dynamics of the Adh Gene

    E-Print Network [OSTI]

    Small, Randall

    Copyright © 2000 by the Genetics Society of America Copy Number Lability and Evolutionary Dynamics State University, Ames, Iowa 50011 Manuscript received January 18, 2000 Accepted for publication April 21, 2000 ABSTRACT Nuclear-encoded genes exist in families of various sizes. To further our

  3. Posters: Psychiatric Genetics, Neurogenetics and Neurodegeneration74 Copy number aberrations affecting adhesion genes involved in the

    E-Print Network [OSTI]

    Hochreiter, Sepp

    . For extracting ASD candidate genes, we developed an analysis pipeline for rare and small CNAs. Rare CNAs risk in 5-15% of cases in families with one affected individual. We performed array comparative genomic

  4. The landscape of somatic copy-number alteration across human cancers

    E-Print Network [OSTI]

    Lander, Eric S.

    A powerful way to discover key genes with causal roles in oncogenesis is to identify genomic regions that undergo frequent alteration in human cancers. Here we present high-resolution analyses of somatic copy-number ...

  5. Uncorrected Proof Copy Finding Genes by Using Computational Tools 85

    E-Print Network [OSTI]

    Uncorrected Proof Copy Finding Genes by Using Computational Tools 85 Job: Plant Functional Genomics/Rev.02.03 Uncorrected Proof Copy #12;Uncorrected Proof Copy Finding Genes by Using Computational Tools 87 Computational Tools 89 Job: Plant Functional Genomics--Grotewold Compositor: Nettype Chapter: Chapter 6 Date: 3

  6. The Evolution of a High Copy Gene Array in Arabidopsis

    E-Print Network [OSTI]

    Kane, Joshua; Freeling, Michael; Lyons, Eric

    2010-01-01

    48:597–604 Zhang J (2003) Evolution by gene duplication: an10.1007/s00239-010-9350-2 The Evolution of a High Copy Genein understanding the evolution of genomes and their host

  7. Minimum Number of Copies in the Measurement of Multi-Photon Entanglement

    E-Print Network [OSTI]

    Yiping Lu; Qing Zhao

    2015-08-02

    Multi-photon entanglement has been successfully made by experimental groups. As the increase of photon number, several problems are encountered, say, greater number of copies, longer time, the error of fidelity and so on. In this paper, we present a new scheme based on Lagrange multiplier and feedback to save the measure copies in multi-photon experiment and five percent of measuring time, also guarantee the acceptable error of fidelity. All the results have been supported by the data of eight photon experiment. Furthermore, same approach is applied in the simulation for ten photon entanglement, and 22.45 percent of copies are saved, optimized copy distribution gives better estimation of fidelity than the average copy distribution.

  8. The Identification and Characterization of Copy Number Variants in the Bovine Genome 

    E-Print Network [OSTI]

    Doan, Ryan

    2013-06-26

    the two subspecies. Furthermore, we examined genetic variation at functional non-coding regions, which were identified through epigenetic profiling of indicative histone- and DNA-methylation modifications. Copy number variants, which were frequently...

  9. Human MutationRESEARCH ARTICLE Recurrent Copy Number Alterations in BRCA1-Mutated

    E-Print Network [OSTI]

    their oncogenesis. Many previous studies investigated copy number alterations (CNA) in sporadic and BRCA between these patients and allows us to learn more about their oncogenesis. Recently, Walsh et al. [2008

  10. Elucidating the genetic architecture of familial schizophrenia using rare copy number variant

    E-Print Network [OSTI]

    Abecasis, Goncalo

    Elucidating the genetic architecture of familial schizophrenia using rare copy number variant Arbor, MI 48109; dDepartment of Psychiatry, Weskoppies Hospital, Pretoria, Republic of South Africa 0001; and eDepartment of Genetics, University of Pretoria, Pretoria, Republic of South Africa 0001

  11. Transformative copy

    E-Print Network [OSTI]

    Offenhuber, Dietmar

    2008-01-01

    The ability to create an unlimited number of identical copies is a privilege of digital documents. What if that would not be the case, if each copy of a digital file would go along with some sort of transformation? This ...

  12. Targeted Interrogation of Copy Number Variation using SCIMMkit Troy Zerr, Gregory M. Cooper, Evan E. Eichler, and Deborah A. Nickerson

    E-Print Network [OSTI]

    Eichler, Evan

    Carroll Table S3, and which have a sample deletion allele frequency exceeding 5%). The coordinates provided, probe coordinates, and normalized A-allele and B-allele intensity (`X' and `Y') and SNP genotype data coordinates and copy number genotypes for these samples, generated by BirdSuite using data produced

  13. Evaluation of the Cow Rumen Metagenome; Assembly by Single Copy Gene Analysis and Single Cell Genome Assemblies(Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    ScienceCinema (OSTI)

    Sczyrba, Alex [DOE JGI

    2013-01-22

    DOE JGI's Alex Sczyrba on "Evaluation of the Cow Rumen Metagenome" and "Assembly by Single Copy Gene Analysis and Single Cell Genome Assemblies" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  14. Global patterns of apparent copy number variation in birds revealed by cross species comparative genomic hybridization

    E-Print Network [OSTI]

    Houde, Peter

    amylase (AMY1) gene has been linked to the adoption of a starch-rich diet in human populations (Perry et

  15. Study of Genomic Copy Number Variation in Equine Health and Disease 

    E-Print Network [OSTI]

    Ghosh, Sharmila

    2014-07-30

    % involved 750 annotated genes with molecular functions predominantly in sensory perception, immunity, and reproduction. The findings were integrated with previous CNV studies in the horse to generate a composite genome-wide dataset of 1476 CNVRs. Of these...

  16. On the Approximability of the Exemplar Adjacency Number Problem for Genomes with Gene Repetitions

    E-Print Network [OSTI]

    Zhu, Binhai

    On the Approximability of the Exemplar Adjacency Number Problem for Genomes with Gene Repetitions the similarity between two genomes (or in general, be- tween any two sequences drawn from the same alphabet). For two genomes G and H drawn from the same set of n gene families and containing gene repeti- tions, we

  17. Control of gene expression by cell size

    E-Print Network [OSTI]

    Wu, Chia-Yung

    2010-01-01

    Polyploidy, increased copy number of whole chromosome sets in the genome, is a common cellular state in evolution, development and disease. Polyploidy enlarges cell size and alters gene expression, producing novel phenotypes ...

  18. Author's copy. Final version published by Elsevier in Energy Procedia volume 1 number 1, pages 2809-2816, February 2009. Proceedings of the 9th International Conference on Greenhouse Gas Control Technologies (GHGT-

    E-Print Network [OSTI]

    Information System; storage capacities; aquifers; coual deposits; depleted fields; risk assessment 1Author's copy. Final version published by Elsevier in Energy Procedia volume 1 number 1, pages 2809 to look for potential storage zones in France D. Bonijoly1 , M. Ha-Duong6 , A. Leynet11 ; A. Bonneville2

  19. MFR Paper 1226. From Marine Fisheries Review, Vol. 38, No. 12, December 1976. Copies of this paper, in limited numbers, are available

    E-Print Network [OSTI]

    . MFR PAPER 1227 Foreign Direct Investment in the U.S. Commercial Fisheries Industry ROBERT A. SIEGELMFR Paper 1226. From Marine Fisheries Review, Vol. 38, No. 12, December 1976. Copies of this paper fisheries industry. The principal data source is the Survey of Foreign Direct Investment in the United

  20. Bayesian Inference of the Number of Factors in Gene-Expression Analysis: Application to Human Virus Challenge Studies

    E-Print Network [OSTI]

    Carin, Lawrence

    Bayesian Inference of the Number of Factors in Gene-Expression Analysis: Application to Human Virus. Ginsburg2 , Alfred Hero III3 , Joseph Lucas2 , David Dunson4 and Lawrence Carin1§ 1 Electrical and Computer University 3 Electrical & Computer Engineering Department, University of Michigan 4 Statistics Department

  1. NATURE BIOTECHNOLOGY VOLUME 25 NUMBER 10 OCTOBER 2007 1111 and drugs that act directly on disease genes.

    E-Print Network [OSTI]

    Kay, Mark A.

    NATURE BIOTECHNOLOGY VOLUME 25 NUMBER 10 OCTOBER 2007 1111 and drugs that act directly on disease an increase in drugs that target the genes asso- ciated with disease. Networkbiologymayalsoplayaroleindrug- target identification. Is it possible to identify drug targets from their position in a biological

  2. NATURE BIOTECHNOLOGY VOLUME 25 NUMBER 8 AUGUST 2007 883 How does eukaryotic gene prediction work?

    E-Print Network [OSTI]

    Fernandes, Chris

    ? Michael R Brent Computational prediction of gene structure is crucial for interpreting genomic sequences primar- ily to annotate large,contiguous sequences generated by whole-genome sequencing. Most programs through web portals such as the University of California Santa Cruz genome browser (http:// genome

  3. Crrected Proof CopyArabidopsis Protoplast System 1 Corrected Proof Copy

    E-Print Network [OSTI]

    Sheen, Jen

    (disease caused by virulent bacteria) and incompatible (resistance to avirulent bacteria) plant by plant resistance (R) proteins to trigger gene-for- #12;Corrected Proof Copy2 He, Shan, and Sheen_He Date: 04_03_06/05_26_06 Revision: 1st Pass/2nd Pass gene resistance (2). R proteins are associated

  4. HIT'nDRIVE: Multi-Driver Gene Prioritization based on Hitting Time

    E-Print Network [OSTI]

    and merged after z-score transformation to obtain a validation dataset containing the gene- expression profile of 177 normal brain tissues and 80 GBM samples. Somatic Mutation Somatic mutation calls for each portal. These Agilent FE format sample files were loaded into BioDiscovery Nexus Copy Number software v7

  5. Increased copy number for methylated maternal 15q duplications leads to changes in gene and protein expression in human cortical samples

    E-Print Network [OSTI]

    Scoles, Haley A; Urraca, Nora; Chadwick, Samuel W; Reiter, Lawrence T; LaSalle, Janine M

    2011-01-01

    melting-curve ana- lysis (MS-HRM) was performed as described50 ng) was then used for MS-HRM on the LightCycler 480 Real-the PWS-IC was per- formed by MS-HRM on the PCR product of

  6. 1 -Routing Number 2 -Account Number

    E-Print Network [OSTI]

    Chen, Yiling

    you will need: · Your Harvard University Id Number (HUID) · Your HUID pin number · Your Checking/Savings on the right side of the screen under Payroll and Compensation. #12;*Please, in an effort to save paper and if you do not wish to receive a paper copy of the check. Click the small box above the SAVE button. CLICK

  7. Page 1 of 3 Quick Guide: Copying Textbooks

    E-Print Network [OSTI]

    Qiu, Weigang

    the Term you would like to copy from 9. Select the Course Subject from the dropdown list 10. Enter the five digit Course Number a. You may leave this field blank to search all courses in that subject 11. Click Search 12. From the list of classes, locate the class you would like to copy textbooks from (source

  8. Copy number: Efficient algorithms for single- and multi-track copy number segmentation

    E-Print Network [OSTI]

    Nilsen, Gro; Liestøl, Knut; Loo, Peter Van; Moen Vollan, Hans Kristian; Eide, Marianne B.; Rueda, Oscar M.; Chin, Suet-Feung; Russell, Roslin; Baumbusch, Lars O.; Caldas, Carlos; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian

    2012-11-04

    -pass filters, i.e. a fil- ter obtaining high absolute values when passing over a breakpoint. The simplest such filter uses for each posi- tion i the difference ?i+k j=i+1 yj ? ?i j=i?k+1 yj for some k. To reduce artifacts due to the abrupt edges of such a... ; additionally the single sample PCF implementation includes a filter searching for aberrations of length equal to the lowest accepted one. These fil- ters together identify about 15% of the probe positions as potential breakpoints. An additional way to speed up...

  9. Author's personal copy PATHOGENESIS

    E-Print Network [OSTI]

    Nizet, Victor

    laboratory. To evaluate the indirect evidence implicating CAMP factor in GBS pathogenesis, the cfb gene peptide fragments [4] and its encoding gene (cfb) was successfully cloned and expressed in Escherichia

  10. SHORT REPORT Open Access No additional copies of HERV-Fc1 in the germ line

    E-Print Network [OSTI]

    Schierup, Mikkel Heide

    SHORT REPORT Open Access No additional copies of HERV-Fc1 in the germ line of multiple sclerosis of multiple sclerosis (MS). This suspicion has in part been based on increased expression of viral RNA this provirus and multiples sclerosis. Keywords: HERV-Fc1, Multiple sclerosis, Provirus copy-number Findings

  11. Department.: Music Department Course number: 210W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Music Department Course number: 210W Course title: Music, History, and Ideas Credits: 3 Contact Person: Alain Frogley Catalog Copy: MUSI 210W. Music, History, and Ideas Either semester

  12. Planar Ramsey Numbers for Small Graphs Andrzej Dudek

    E-Print Network [OSTI]

    Ruciñski, Andrzej

    Planar Ramsey Numbers for Small Graphs Andrzej Dudek Department of Mathematics and Computer Science Adam Mickiewicz University Pozna´n, Poland Abstract Given two graphs G1 and G2, the planar Ramsey a copy of G1 or its complement contains a copy of G2. So far, the planar Ramsey numbers have been deter

  13. The dynamics of simple gene network motifs subject to extrinsic fluctuations

    E-Print Network [OSTI]

    Roberts, Elijah; Bohrer, Chris; Sharma, Rati; Assaf, Michael

    2015-01-01

    Cellular processes do not follow deterministic rules, even in identical environments genetically identical cells can make random choices leading to different phenotypes. This randomness originates from fluctuations present in the biomolecular interaction networks. Most previous work has been focused on the intrinsic noise (IN) of these networks. Yet, especially for high-copy-number biomolecules, extrinsic or environmental noise (EN) has been experimentally shown to dominate the variation. Here we develop an analytical formalism that allows for calculation of the effect of extrinsic noise on gene expression motifs. We introduce a new method for modeling bounded EN as an auxiliary species in the master equation. The method is fully generic and is not limited to systems with small EN magnitudes. We focus our study on motifs that can be viewed as the building blocks of genetic switches: a non-regulated gene, a self-inhibiting gene, and a self-promoting gene. The role of the EN properties (magnitude, correlation t...

  14. Coordinate amplification of metallothionein I and II gene sequences in cadmium-resistant CHO variants

    SciTech Connect (OSTI)

    Hildebrand, C.E.; Crawford, B.D.; Enger, M.D.

    1983-01-01

    Cadmium-resistanc (Cd/sup r/) variants of the Chinese hamster cell line, CHO, have been derived by stepwise selection for growth in medium containing CdCl/sub 2/. These variants show coordinately increased production of both metallothionein (MT) I and II and were stably resistant to Cd/sup 2 +/ in the absence of continued selection. Genomic DNAs from these Cd/sup r/ sublines were analyzed for both MT gene copy number and MT gene organization, using cDNA sequence probes specific for each of the two Chinese hamster isometallothioneins. These analyses revealed coordinate amplification of MT I and II genes in all Cd/sup r/ variants which had increased copies of MT-encoding sequences. In situ hybridization of an MT-encoding probe to mitotic chromosomes of a Cd/sup r/ variant, which has amplified MT genes at least 14-fold, revealed a single chromosomal site of hybridization. These results suggest that the isoMTs constitute a functionally related gene cluster which amplifies coordinately in response to toxic metal stress.

  15. Supporting Material Measurement of the copy number of the master

    E-Print Network [OSTI]

    Ong, N. P.

    University, Princeton, NJ 08544, USA, Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA #12;1. V between the 2 coverslips surrounding the pad was filled with mineral oil to prevent evaporation. To obtain and the bottom of a Petri dish (light blue strips). The space was surrounded by mineral oil as indicated

  16. A portrait of copy-number polymorphism in Drosophila melanogaster

    E-Print Network [OSTI]

    Dopman, Erik B.

    segments are the most distinguishing features characterizing divergence in ge- nome architecture between variation) within species drive these exceptional differences in genome architecture (4). Although from the United States (New York), West Africa (Cameroon), East Africa (Kenya), French Polynesia

  17. Author's personal copy Cosmogenic 7

    E-Print Network [OSTI]

    Usoskin, Ilya G.

    Author's personal copy Cosmogenic 7 Be and 22 Na in Finland: Production, observed periodicities a Radiation and Nuclear Safety Authority, Regional Laboratory in Northern Finland, Rovaniemi, Finland b Sodankyl¨a Geophysical Observatory, Oulu Unit, University of Oulu, Finland c Ioffe Physical

  18. DOCUMENT RELEASE FORM S (1) Document Number: RPP-RPT-42296

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    FORM S (1) Document Number: RPP-RPT-42296 (2) Revision Number: 0 (3) Effective Date: 04122010 (4) Document Type: EQ Digital Image El Hard copy (a) Number of pages (including the...

  19. US 18, PCC Overlay | 2 FINAL BID COPY 10/19/10

    E-Print Network [OSTI]

    #12;US 18, PCC Overlay | 2 FINAL BID COPY 10/19/10 · Late Start Date - April 14, 2011 · Number of working days - 120 · Number of Bidders - 6 · Bid range $8.48 million to 10.51 million · Prime Contractor and maintained by the Iowa DOT. b. Robotic total station, GPS receive pole, hand held data collector with GPS

  20. Copy of Synthetic Biology of Novel Thermophilic Bacteria for...

    Office of Scientific and Technical Information (OSTI)

    Copy of Synthetic Biology of Novel Thermophilic Bacteria for Enhanced Production of Ethanol from 5-Carbon Sugars (LDRD %23 105944). Citation Details In-Document Search Title: Copy...

  1. PROOF COPY 001502FCT Science and

    E-Print Network [OSTI]

    Rajasekaran, Sanguthevar

    PROOF COPY 001502FCT PROOF COPY 001502FCT Journal of Fuel Cell Science and Technology Technical Processing, Mathematical Modeling, Fuel Cell, Computing Applications 1 Introduction The importance of the fuel cell technology has been felt in the past three decades as revealed by the amount

  2. copy

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power AdministrationRobust,Field-effectWorkingLos AlamosSimulation Initiative7 Boundarycontainersconvert program

  3. PHYS 4xx Mem 8 1 2010 by David Boal, Simon Fraser University. All rights reserved; further copying or resale is strictly prohibited.

    E-Print Network [OSTI]

    Boal, David

    PHYS 4xx Mem 8 1 2010 by David Boal, Simon Fraser University. All rights reserved; further copying or resale is strictly prohibited. PHYS 4xx Mem 8 - Model for signal propagation (Note: the equation numbers 4xx Mem 8 2 2010 by David Boal, Simon Fraser University. All rights reserved; further copying

  4. Department .: Sociology Course number : Soci 290W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department .: Sociology Course number : Soci 290W Title : Social Movements and Social Change Credits : 3 Contact Person : Brad Wright Catalog Copy : Soci 290. Social Movements and Social Change, and escapist movements. Soci 290W. Social Movements and Social Change. Prerequisite: Engl 110 or 111 or 250. W

  5. Department .: Sociology Course number : Soci 227W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department .: Sociology Course number : Soci 227W Title : Revolutionary Social Movements Around the World Credits : 3 Contact Person : Brad Wright Catalog Copy : Soci 227. Revolutionary Social Movements, and Nicaraguan revolutions and movements in South Africa and the Middle East. Soci 227W. Revolutionary Social

  6. Department: HISTORY Course number: 3551 W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department: HISTORY Course number: 3551 W Course title: Topics in U.S. Legal History Credits: 3 Contact Person: Sherri Olson Q/W: W Catalog Copy:HIST 3551W [248W]. Topics in U.S.Legal History. 3 credits

  7. Department: Art History Course number: 3050W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department: Art History Course number: 3050W Course title: African American Art Credits: 3 Contact Person:Jean Givens Content Area: Q/W: W only Catalog Copy:ARTH 3050W African American Art, Either semester. 3 credits The artistic and social legacy of African American art from the eighteenth century

  8. Department: Art & Art History Course number: 3375

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department: Art & Art History Course number: 3375 Course title: Indian Art and Popular Culture Copy: ART 244/3375: Indian Art and Popular Culture: Independence to the Present, 3 credits. Either semester. Instructor: Myers. An interdisciplinary studio art course introducing modern, contemporary, folk

  9. Department: Journalism Course number: 3045W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department: Journalism Course number: 3045W Course title: Specialized Reporting Credits: 3 Contact Person: Wayne Worcester Q/W: W Catalog Copy: JOUR 245W. Specialized Journalism Either semester. Three and feature stories and journalism that demands unswerving accuracy, uncommon grace and thoughtful context

  10. Department.: Psychology Course Number: PSYC 239W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 239W Course Title: Current Topics in Developmental Psychology Credits: 3 Contact Person: John Rickards Catalog Copy: Current Topics in Developmental Psychology Division of the Department of Psychology, the faculty have used this "Current Topics" course to fulfill

  11. Department.: Psychology Course Number: PSYC 282W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 282W Course Title: Social-Organizational Psychology Credits: 3 Contact Person: John Rickards Catalog Copy: PSYC 282W. Social-Organizational Psychology. Either semester. Three credits. Prerequisite: PSYC 268 or PSYC 240. Barnes-Farell, Magley. Social psychological

  12. Department.: Psychology Course Number: PSYC 202QW

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 202QW Course Title: Principles of Research in Psychology Credits: 4 Contact Person: Charles A. Lowe, Department Head Catalog Copy : PSYC 202QW. Principles of Research in Psychology Either semester. Four credits. Three 1-hour lecture periods and one 2-hour

  13. Department.: Psychology Course Number: PSYC 296W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 296W Course Title: Senior Thesis in Psychology Credits: 3 Contact Person: John Rickards Catalog Copy: Senior Thesis in Psychology. Either semester. ThreeW is an Honors course taken by Psychology majors in their last semester of study; the purpose

  14. Department.: Psychology Course Number: PSYC 280W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 280W Course Title: Current Topics in Industrial/Organizational Psychology Credits: 3 Contact Person: John Rickards Competency Group: W only Catalog Copy: PSYC 280W. Current Topics in Industrial/Organizational Psychology. Three credits. Either semester. Prerequisites: PSYC 135

  15. Department.: Psychology Course Number: PSYC 241W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 241W Course Title: Current Topics in Social Psychology Credits: 3 Contact Person: John Rickards Catalog Copy: 241W. Current Topics in Social Psychology. Semester of bias, communication of prejudice, self-in social psychology, psychosocial aspects of the HIV epidemic

  16. Department.: Psychology Course Number: PSYC 291W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 291W Course Title: The History and Systems of Psychology Credits: 3 Contact Person: John Rickards Catalog Copy: PSYC 291W. The History and Systems of Psychology. Prerequisite: PSYC 135 or 133; ENGL 105 or 110 or 111 or 250. W Criteria: 1. The History

  17. Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes

    E-Print Network [OSTI]

    Gent, Universiteit

    -finned fishes (Actinopterygii) seem to have two copies of many tetrapod (Sarcopterygii) genes. The origin of these duplicate fish genes is the subject of some controversy. One explanation for the existence of these extra fish genes could be an increase in the rate of independent gene duplications in fishes. Alternatively

  18. Strong CP Problem with 10{sup 32} Standard Model Copies

    SciTech Connect (OSTI)

    Dvali, Gia [CERN Theory Division, CH-1211, Geneva 23 (Switzerland); Center for Cosmology and Particle Physics New York University, New York, New York 10003 (United States); Farrar, Glennys R. [Center for Cosmology and Particle Physics New York University, New York, New York 10003 (United States)

    2008-07-04

    We show that a recently proposed solution to the hierarchy problem simultaneously solves the strong CP problem, without requiring an axion or any further new physics. Consistency of black hole physics implies a nontrivial relation between the number of particle species and particle masses, so that with {approx}10{sup 32} copies of the standard model, the TeV scale is naturally explained. At the same time, as shown here, this setup predicts a typical expected value of the strong-CP parameter in QCD of {theta}{approx}10{sup -9}. This strongly motivates a more sensitive measurement of the neutron electric dipole moment.

  19. Strong CP Problem with 10^{32} Standard Model Copies

    E-Print Network [OSTI]

    Gia Dvali; Glennys R. Farrar

    2007-12-19

    We show that a recently proposed solution to the Hierarchy Problem simultaneously solves the Strong CP Problem, without requiring an axion or any further new physics. Consistency of black hole physics implies a non-trivial relation between the number of particle species and particle masses, so that with ~10^{32} copies of the standard model, the TeV scale is naturally explained. At the same time, as shown here, this setup predicts a typical expected value of the strong-CP parameter in QCD of theta ~ 10^{-9}. This strongly motivates a more sensitive measurement of the neutron electric dipole moment.

  20. Author's personal copy A note on the scope of the journal

    E-Print Network [OSTI]

    Lee, Xuhui

    Author's personal copy Editorial A note on the scope of the journal Agricultural and Forest Meteorology is an international journal for the publication of original articles and reviews on the inter experimental data. In recent years, the journal has seen a rapid increase in submission numbers. This growth

  1. Kinetic vs. energetic discrimination in biological copying

    E-Print Network [OSTI]

    Pablo Sartori; Simone Pigolotti

    2013-04-12

    We study stochastic copying schemes in which discrimination between a right and a wrong match is achieved via different kinetic barriers or different binding energies of the two matches. We demonstrate that, in single-step reactions, the two discrimination mechanisms are strictly alternative and can not be mixed to further reduce the error fraction. Close to the lowest error limit, kinetic discrimination results in a diverging copying velocity and dissipation per copied bit. On the opposite, energetic discrimination reaches its lowest error limit in an adiabatic regime where dissipation and velocity vanish. By analyzing experimentally measured kinetic rates of two DNA polymerases, T7 and Pol{\\gamma}, we argue that one of them operates in the kinetic and the other in the energetic regime. Finally, we show how the two mechanisms can be combined in copying schemes implementing error correction through a proofreading pathway

  2. On Pattern Ramsey Numbers of Graphs Robert E. Jamison

    E-Print Network [OSTI]

    West, Douglas B.

    On Pattern Ramsey Numbers of Graphs Robert E. Jamison Mathematical Sciences Clemson University is a Ramsey family if there is some integer N such that every edge- coloring of KN has a copy of some pattern in F. The smallest such N is the (pattern) Ramsey number R(F) of F. The classical Canonical Ramsey

  3. On Pattern Ramsey Numbers of Graphs Robert E. Jamison

    E-Print Network [OSTI]

    West, Douglas B.

    On Pattern Ramsey Numbers of Graphs Robert E. Jamison Mathematical Sciences Clemson University is a Ramsey family if there is some integer N such that every edge- coloring of KN has a copy of some pattern in F . The smallest such N is the (pattern) Ramsey number R(F ) of F . The classical Canonical Ramsey

  4. On the size-Ramsey number of hypergraphs Andrzej Dudek

    E-Print Network [OSTI]

    Mubayi, Dhruv

    On the size-Ramsey number of hypergraphs Andrzej Dudek Steven La Fleur Dhruv Mubayi Vojtech R¨odl§ March 20, 2015 Abstract The size-Ramsey number of a graph G is the minimum number of edges in a graph H such that every 2-edge-coloring of H yields a monochromatic copy of G. Size-Ramsey numbers of graphs have been

  5. What does motor efference copy represent? evidence from speech production

    E-Print Network [OSTI]

    Niziolek, CA; Nagarajan, SS; Houde, JF

    2013-01-01

    What does motor efference copy represent? Evidence fromAbbreviated title: What does motor efference copy represent?SJ, Wang X (2003) Sensory-Motor Interaction in the Primate

  6. CopyStyler : Web design by example

    E-Print Network [OSTI]

    Fitzgerald, Michael J., M. Eng Massachusetts Institute of Technology

    2008-01-01

    This thesis describes the design and implementation of CopyStyler, a tool to enable novice web users to style their own web pages by emulating the style of existing pages on the Web. The tool is implemented as a browser ...

  7. SEGMENT ORDER PRESERVING COPYING GARBAGE COLLECTION

    E-Print Network [OSTI]

    Tarau, Paul

    allows instant reclaiming and in fact, the MALI­ implementation [11] contains a bottom­up copying part reclaiming, but actually can improve it by moving objects to newer segments when this is allowed. MALI has, this property of MALI was never recognized, not even by its authors. Also, due to its data representation, MALI

  8. Gene Concepts, Gene Talk, and Gene Patents

    E-Print Network [OSTI]

    Torrance, Andrew W.

    2010-01-01

    Since the existence of a discrete unit of heredity was first proposed by Gregor Mendel, scientific concepts of the “gene” have undergone rapid evolution. Beyond obvious epistemic and operational importance to the scientific community, changing gene...

  9. Electronic copy available at: http://ssrn.com/abstract=1081923 January 2008 Journal of Engineering Education 13

    E-Print Network [OSTI]

    Stockman, George

    IN ENGINEERING The global economy is undergoing a dynamic evolution. "Glob- alization" is the name of the gameElectronic copy available at: http://ssrn.com/abstract=1081923 January 2008 Journal of Engineering Education 13 Getting the Numbers Right: International Engineering Education in the United States, China

  10. Classification of Sporadic and BRCA1 Ovarian Cancer Based on a Genome-Wide Study of Copy

    E-Print Network [OSTI]

    Classification of Sporadic and BRCA1 Ovarian Cancer Based on a Genome-Wide Study of Copy Number related ovarian cancer patients. Results: Chromosomal regions characterizing each group of sporadic and BRCA1 related ovarian cancer were gathered using multiple sample hid- den Markov Models (HMM

  11. The Size-Ramsey Number of Trees P.E. Haxell1* and Y. Kohayakawa2

    E-Print Network [OSTI]

    Kohayakawa, Yoshiharu

    The Size-Ramsey Number of Trees P.E. Haxell1* and Y. Kohayakawa2 1Department of Pure- matic copy of H in any 2-colouring of the edges of G. The size-Ramsey number re* *(H) of a graph H are concerned with a numerical problem in Ramsey theory: we shall study the size-Ramsey number of trees. Before

  12. Change Number

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 OutreachProductswsicloudwsiclouddenDVA N C E D BGene Network ShapingDate: M-16-04-04 Federal FacilityChange Number

  13. Metazoan Gene Families from Metazome

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Metazome is a joint project of the Department of Energy's Joint Genome Institute and the Center for Integrative Genomics to facilitate comparative genomic studies amongst metazoans. Clusters of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These clusters allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of version 2.0.4, Metazome provides access to twenty-four sequenced and annotated metazoan genomes, clustered at nine evolutionarily significant nodes. Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, Ensembl, and JGI are hyper-linked and searchable. The included organisms (by common name) are: Human, Mouse, Rat, Dog, Opossum, Chicken, Frog, Stickleback, Medaka, Fugu pufferfish; Zebrafish, Seasquirt - savignyi, Seasquirt - intestinalis, Amphioxus, Sea Urchin, Fruitfly, Mosquite, Yellow Fever Mosquito, Silkworm, Red Flour Beetle, Worm, Briggsae Worm, Owl limpet (snail), and Sea anemone. [Copied from Metazome Overview at http://www.metazome.net/Metazome_info.php

  14. Author's personal copy Large deformation and electrochemistry of polyelectrolyte gels

    E-Print Network [OSTI]

    Hong, Wei

    Author's personal copy Large deformation and electrochemistry of polyelectrolyte gels Wei Hong and electrochemistry. A specific material model is described, including the effects of stretching the network, mixing

  15. PROOF COPY 001403EQS Tsunami Hazards Associated with the

    E-Print Network [OSTI]

    Synolakis, Costas E.

    PROOF COPY 001403EQS PROOF COPY 001403EQS Tsunami Hazards Associated with the Catalina Fault the tsunami hazard associated with the Catalina Fault off- shore of southern California. Realistic faulting scenarios with moment magnitudes ranging between 7.0 and 7.6 are used as initial conditions for tsunami

  16. Trichoderma genes

    DOE Patents [OSTI]

    Foreman, Pamela (Los Altos, CA); Goedegebuur, Frits (Vlaardingen, NL); Van Solingen, Pieter (Naaldwijk, NL); Ward, Michael (San Francisco, CA)

    2012-06-19

    Described herein are novel gene sequences isolated from Trichoderma reesei. Two genes encoding proteins comprising a cellulose binding domain, one encoding an arabionfuranosidase and one encoding an acetylxylanesterase are described. The sequences, CIP1 and CIP2, contain a cellulose binding domain. These proteins are especially useful in the textile and detergent industry and in pulp and paper industry.

  17. Human Evolutionary Genetics Robert Trivers The recent explosion of work on human genomics has produced an astonishing

    E-Print Network [OSTI]

    Chen, Kuang-Yu

    .H. et al. 2007. Diet and the evolution of human amylase gene copy number variation. Nature Genetics 39

  18. STAPLE copy of Hepatitis B Surface

    E-Print Network [OSTI]

    Hamburger, Peter

    STAPLE copy of Hepatitis B Surface Antibody (anti-HBs) titer lab results here! Department and complete the bottom portion of the page. Section A: HEPATITIS IMMUNIZATION RECORD Hepatitis B Surface ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Section B: HEPATITIS B VACCINATION DECLINATION I understand that due to my chance of occupational exposure

  19. The classical double copy for Taub-NUT spacetime

    E-Print Network [OSTI]

    Luna, A; O'Connell, D; White, C D

    2015-01-01

    The double copy is a much-studied relationship between gauge theory and gravity amplitudes. Recently, this was generalised to an infinite family of classical solutions to Einstein's equations, namely stationary Kerr-Schild geometries. In this paper, we extend this to the Taub-NUT solution in gravity, which has a double Kerr-Schild form. The single copy of this solution is a dyon, whose electric and magnetic charges are related to the mass and NUT charge in the gravity theory. Finally, we find hints that the classical double copy extends to curved background geometries.

  20. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Zhang, Qi-Bin

    tree-ring data and sunspot numbers indicated that the cross power around the 11-year solar cycle's personal copy Evidence of solar signals in tree rings of Smith fir from Sygera Mountain in southeast Tibet: Solar activity Tree rings Schwabe cycle Wavelet analysis Tibetan Plateau a b s t r a c t Solar activity

  1. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Parrott, Wayne

    's personal copy New Biotechnology Volume 27, Number 5 November 2010 REVIEW Genetically modified myths over the past decade have revealed that genetically engineered foods can pose serious risks to humans and realities Wayne Parrott Department of Crop & Soil Sciences, and Institute for Plant Breeding, Genetics

  2. Author's personal copy Biosensors and Bioelectronics 25 (2010) 11551159

    E-Print Network [OSTI]

    2010-01-01

    Author's personal copy Biosensors and Bioelectronics 25 (2010) 1155­1159 Contents lists available at ScienceDirect Biosensors and Bioelectronics journal homepage: www.elsevier.com/locate/bios Variation

  3. Author's personal copy Biosensors and Bioelectronics 25 (2010) 22702275

    E-Print Network [OSTI]

    Brolo, Alexandre G.

    2010-01-01

    Author's personal copy Biosensors and Bioelectronics 25 (2010) 2270­2275 Contents lists available at ScienceDirect Biosensors and Bioelectronics journal homepage: www.elsevier.com/locate/bios Multilayer

  4. Author's personal copy Mechanical and electrical properties of aligned

    E-Print Network [OSTI]

    Zhu, Yuntian T.

    Author's personal copy Mechanical and electrical properties of aligned carbon nanotube/C) composites rivaling or exceeding the mechanical and electrical properties of current carbon fiber fabricated CNT/ polyacrylonitrile (PAN) precursor composites with high degree of CNT alignment, and car

  5. Using DMA for copying performance counter data to memory

    DOE Patents [OSTI]

    Gara, Alan; Salapura, Valentina; Wisniewski, Robert W

    2013-12-31

    A device for copying performance counter data includes hardware path that connects a direct memory access (DMA) unit to a plurality of hardware performance counters and a memory device. Software prepares an injection packet for the DMA unit to perform copying, while the software can perform other tasks. In one aspect, the software that prepares the injection packet runs on a processing core other than the core that gathers the hardware performance data.

  6. Using DMA for copying performance counter data to memory

    DOE Patents [OSTI]

    Gara, Alan; Salapura, Valentina; Wisniewski, Robert W.

    2012-09-25

    A device for copying performance counter data includes hardware path that connects a direct memory access (DMA) unit to a plurality of hardware performance counters and a memory device. Software prepares an injection packet for the DMA unit to perform copying, while the software can perform other tasks. In one aspect, the software that prepares the injection packet runs on a processing core other than the core that gathers the hardware performance counter data.

  7. Effects of genome-wide copy number variation on expression in mammalian cells

    E-Print Network [OSTI]

    Wang, Richard T; Ahn, Sangtae; Park, Christopher C; Khan, Arshad H; Lange, Kenneth; Smith, Desmond J

    2011-01-01

    al: An STS-based radiation hybrid map of the human genome.Milan D, et al: Radiation hybrid map of the porcine genomeA: A comprehensive radiation hybrid map of the bovine genome

  8. Evidence of efficient stop codon readthrough in four mammalian genes

    E-Print Network [OSTI]

    Loughran, Gary

    Stop codon readthrough is used extensively by viruses to expand their gene expression. Until recent discoveries in Drosophila, only a very limited number of readthrough cases in chromosomal genes had been reported. Analysis ...

  9. Analysis of the Arabidopsis NAC gene superfamily in plant development 

    E-Print Network [OSTI]

    Alvarado Chavez, Veria Ysabel

    2009-05-15

    There are a vast number of transcription factors that regulate plant growth and development. The NAC gene superfamily is one of the largest families of transcription factors in the plant kingdom. NAC gene expression profiles using Affymetrix ATH1...

  10. The chemical defensome: Environmental sensing and response genes in the Strongylocentrotus purpuratus genome

    E-Print Network [OSTI]

    The chemical defensome: Environmental sensing and response genes in the Strongylocentrotus September 2006 Abstract Metazoan genomes contain large numbers of genes that participate in responses families thought to protect against chemical stressors; these genes collectively comprise the `chemical

  11. Methods for identifying an essential gene in a prokaryotic microorganism

    DOE Patents [OSTI]

    Shizuya, Hiroaki

    2006-01-31

    Methods are provided for the rapid identification of essential or conditionally essential DNA segments in any species of haploid cell (one copy chromosome per cell) that is capable of being transformed by artificial means and is capable of undergoing DNA recombination. This system offers an enhanced means of identifying essential function genes in diploid pathogens, such as gram-negative and gram-positive bacteria.

  12. Table 1 (Supplemental): Summary of expression programs discovered by GeneProgram from Novartis Tissue Atlas v2 data

    E-Print Network [OSTI]

    Gerber, Georg K.

    2007-06-25

    Table 1 (Supplemental): Summary of recurrent expression programs (EPs) discovered by GeneProgram. The columns are: (1) the EP identifier (an arbitrarily assigned number), (2) the number of genes in the EP, (3) the number ...

  13. Molecular mechanisms of extensive mitochondrial gene rearrangementin plethodontid salamanders

    SciTech Connect (OSTI)

    Mueller, Rachel Lockridge; Boore, Jeffrey L.

    2005-06-01

    Extensive gene rearrangement is reported in the mitochondrial genomes of lungless salamanders (Plethodontidae). In each genome with a novel gene order, there is evidence that the rearrangement was mediated by duplication of part of the mitochondrial genome, including the presence of both pseudogenes and additional, presumably functional, copies of duplicated genes. All rearrangement-mediating duplications include either the origin of light strand replication and the nearby tRNA genes or the regions flanking the origin of heavy strand replication. The latter regions comprise nad6, trnE, cob, trnT, an intergenic spacer between trnT and trnP and, in some genomes, trnP, the control region, trnF, rrnS, trnV, rrnL, trnL1, and nad1. In some cases, two copies of duplicated genes, presumptive regulatory regions, and/or sequences with no assignable function have been retained in the genome following the initial duplication; in other genomes, only one of the duplicated copies has been retained. Both tandem and non-tandem duplications are present in these genomes, suggesting different duplication mechanisms. In some of these mtDNAs, up to 25 percent of the total length is composed of tandem duplications of non-coding sequence that includes putative regulatory regions and/or pseudogenes of tRNAs and protein-coding genes along with otherwise unassignable sequences. These data indicate that imprecise initiation and termination of replication, slipped-strand mispairing, and intra-molecular recombination may all have played a role in generating repeats during the evolutionary history of plethodontid mitochondrial genomes.

  14. Degree Ramsey numbers for cycles and blowups of trees , Kevin G. Milans

    E-Print Network [OSTI]

    West, Douglas B.

    Degree Ramsey numbers for cycles and blowups of trees Tao Jiang , Kevin G. Milans , and Douglas B a monochromatic copy of G in some color class. Let the s-color degree Ramsey number of a graph G, written R(G; s), be min{(H): H s G}. We prove that the 2-color degree Ramsey number is at most 96 for every even cycle

  15. Superstring BRST no-ghost theorem at arbitrary picture number

    E-Print Network [OSTI]

    Mykola Dedushenko

    2015-11-12

    A simple and self-contained treatment of the superstring BRST no-ghost theorem at non-zero momentum and arbitrary picture number is presented. We prove by applying the spectral sequence that the absolute BRST cohomology is isomorphic to two copies of the light-cone spectrum at adjacent ghost numbers. We single out a representative in each cohomology class. A non-degenerate pairing between the Fock spaces, an induced pairing on the cohomology and a Hermitian inner product on the cohomology are constructed.

  16. On Ramsey Numbers

    E-Print Network [OSTI]

    Dhananjay P. Mehendale

    2006-05-24

    In this paper we define new numbers called the Neo-Ramsay numbers. We show that these numbers are in fact equal to the Ramsay numbers. Neo-Ramsey numbers are easy to compute and for finding them it is not necessary to check all possible graphs but enough to check only special kind of graphs having a well-defined adjacency pattern.

  17. Coulomb gauge Gribov copies and the confining potential

    E-Print Network [OSTI]

    Tom Heinzl; Kurt Langfeld; Martin Lavelle; David McMullan

    2007-09-05

    We study the approach, initiated by Marinari et al., to the static inter-quark potential based on Polyakov lines of finite temporal extent, evaluated in Coulomb gauge. We show that, at small spatial separations, the potential can be understood as being between two separately gauge invariant colour charges. At larger separations Gribov copies obstruct the non-perturbative identification of individually gauge invariant colour states. We demonstrate, for the first time, how gauge invariance can be maintained quite generally by averaging over Gribov copies. This allows us to extend the analysis of the Polyakov lines and the corresponding, gauge invariant quark-antiquark state to all distance scales. Using large scale lattice simulations, we show that this interpolating state possesses a good overlap with the ground state in the quark-antiquark sector and yields the full static inter-quark potential at all distances. A visual representation of the Gribov copies on the lattice is also presented.

  18. Copy of Development of an Ultra Scalable Low Power Rad-Hard Nonvolatil...

    Office of Scientific and Technical Information (OSTI)

    Copy of Development of an Ultra Scalable Low Power Rad-Hard Nonvolatile Memory for Space Applications. Citation Details In-Document Search Title: Copy of Development of an Ultra...

  19. 0018-9162/01/$10.00 2001 IEEE48 Computer Copy Protection

    E-Print Network [OSTI]

    Wallach, Dan

    incentive to copy digital music to analog media. SNAKE-OIL CURES With the ubiquity of CD burners, technology

  20. Author's personal copy The caBIG terminology review process

    E-Print Network [OSTI]

    Cimino, James J.

    in evaluating four standard terminologies: the Gene Ontology (GO), the NCI Thesaurus (NCIt), the Common

  1. Author's personal copy GPU based real-time instrument tracking

    E-Print Network [OSTI]

    Author's personal copy GPU based real-time instrument tracking with three-dimensional ultrasound q April 2007; accepted 4 June 2007 Available online 5 July 2007 Abstract Real-time three-dimensional ultrasound enables new intracardiac surgical procedures, but the distorted appearance of instruments

  2. Author's personal copy Protein folding: Then and now

    E-Print Network [OSTI]

    Dokholyan, Nikolay V.

    Author's personal copy Review Protein folding: Then and now Yiwen Chen 1 , Feng Ding 1 , Huifen Nie Available online 8 June 2007 Abstract Over the past three decades the protein folding field has undergone monumental changes. Originally a purely academic question, how a protein folds has now become vital

  3. Author's personal copy Comparison of microbial electrolysis cells operated with

    E-Print Network [OSTI]

    Keywords: Boosted power Energy input Hydrogen Methane Microbial electrolysis cell Set anode potential a bAuthor's personal copy Comparison of microbial electrolysis cells operated with added voltage s t r a c t Hydrogen production in a microbial electrolysis cell (MEC) can be achieved by either setting

  4. Author's personal copy Evolution and Phylogeny of Communication

    E-Print Network [OSTI]

    Ord, Terry

    Author's personal copy Evolution and Phylogeny of Communication T. J. Ord, University of New South History In broad terms, the way in which animals communicate with one another is dependent on three key than others. Yet, how communication evolves in response to social and environmental selection pressures

  5. Author's personal copy Protein folding in confined and crowded environments

    E-Print Network [OSTI]

    Weston, Ken

    Author's personal copy Review Protein folding in confined and crowded environments Huan-Xiang Zhou protein folding in cellular environments. Theories based on considerations of excluded volumes predict disparate effects on protein folding stability for confinement and crowding: confinement can stabilize

  6. Author's personal copy Fuzzy modelling of the composting process

    E-Print Network [OSTI]

    Author's personal copy Fuzzy modelling of the composting process E. Giusti, S. Marsili May 2009 Available online 18 June 2009 Keywords: Composting Fuzzy models Fuzzy identification Fuzzy clustering a b s t r a c t Composting is a solid waste treatment process consisting of the biochemical

  7. Taking the Copy Out of Copyright Ernest Miller1

    E-Print Network [OSTI]

    Feigenbaum, Joan

    application to digital documents. We base our analysis on both the nature and characteristics of the digital of security in digital rights management (DRM). Many designers of DRM technology seek to enforce copyright the right to control copying than it would be to change the fundamental designs of PCs and networks

  8. Author's personal copy Computer Physics Communications 185 (2014) 10271037

    E-Print Network [OSTI]

    Tyc, Tomas

    2014-01-01

    Author's personal copy Computer Physics Communications 185 (2014) 1027­1037 Contents lists TIM: Ray-tracer TIM, with additional specialist scientific capabilities Stephen Oxburgha , Tomás Tycb transform Geometrical optics Perfect imaging METATOYs a b s t r a c t We describe several extensions to TIM

  9. Author's personal copy Fusion Engineering and Design 85 (2010) 687693

    E-Print Network [OSTI]

    Harilal, S. S.

    2010-01-01

    Author's personal copy Fusion Engineering and Design 85 (2010) 687­693 Contents lists available. The ITERTHA code is also benchmarked against the thermal-hydraulic calculation of the outer divertor flux and thus accurate calculation of the CHF requires the use of the appropriate FEPF for the given

  10. Author's personal copy Journal of Algebra 320 (2008) 17691770

    E-Print Network [OSTI]

    Kabbaj, Salah-Eddine

    2008-01-01

    Author's personal copy Journal of Algebra 320 (2008) 1769­1770 www.elsevier.com/locate/jalgebra Corrigendum Corrigendum to "Class semigroups of integral domains" [J. Algebra 264 (2) (2003) 620­640] S is a strongly stable domain. Moreover, when any one condition holds, R is Boole regular with S(R) = FOV (R

  11. Author's personal copy Solar modulation in surface atmospheric electricity

    E-Print Network [OSTI]

    Usoskin, Ilya G.

    Author's personal copy Solar modulation in surface atmospheric electricity R. Giles Harrison a is the major source of air's electrical conductivity over the oceans and well above the continents atmospheric electrical circuit, including the local vertical current density and the related surface potential

  12. Author's personal copy Gasoline prices and traffic safety in Mississippi

    E-Print Network [OSTI]

    Levinson, David M.

    more than 16% from 1973 to 1974 when the oil crisis occurred. International oil prices historically-grade unleaded gasoline price data from the Energy Information Administration of the U.S. Department of EnergyAuthor's personal copy Gasoline prices and traffic safety in Mississippi Guangqing Chi a, , Arthur

  13. Author's personal copy Perforated diode neutron detector modules fabricated from

    E-Print Network [OSTI]

    Shultis, J. Kenneth

    Author's personal copy Perforated diode neutron detector modules fabricated from high Perforated detectors Perforated diodes a b s t r a c t Compact neutron detectors are being designed that are mass produced from high-purity Si wafers. Each detector has thousands of circular perforations etched

  14. Author's personal copy Molecular & Biochemical Parasitology 155 (2007) 167171

    E-Print Network [OSTI]

    Davis, Richard E.

    2007-01-01

    Author's personal copy Molecular & Biochemical Parasitology 155 (2007) 167­171 Short technical report An improved and secreted luciferase reporter for schistosomes Guofeng Cheng, Richard E. Davis in schistosomes. In the current study, we demonstrate that a Gaussia luciferase reporter leads to significantly

  15. Degree Ramsey numbers for cycles and blowups of trees Tao Jiang # , Kevin G. Milans + , and Douglas B. West #

    E-Print Network [OSTI]

    West, Douglas B.

    Degree Ramsey numbers for cycles and blowups of trees Tao Jiang # , Kevin G. Milans + , and Douglas a monochromatic copy of G in some color class. Let the s­color degree Ramsey number of a graph G, written R# (G; s), be min{#(H) : H s # G}. We prove that the 2­color degree Ramsey number is at most 96 for every even cycle

  16. Shannon Capacity Ramsey Numbers

    E-Print Network [OSTI]

    Radziszowski, Stanislaw P.

    Shannon Capacity Ramsey Numbers Old links between Shannon and Ramsey New links between Shannon and Ramsey Bounds on Shannon Capacity and Ramsey Numbers from Product of Graphs Xiaodong Xu1 Stanislaw Institute of Technology, NY, USA March 2014 1/24 #12;Shannon Capacity Ramsey Numbers Old links between

  17. Towards an informative mutant phenotype for every bacterial gene

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Deutschbauer, Adam; Price, Morgan N.; Wetmore, Kelly M.; Tarjan, Daniel R.; Xu, Zhuchen; Shao, Wenjen; Leon, Dacia; Arkin, Adam P.; Skerker, Jeffrey M.

    2014-08-11

    Mutant phenotypes provide strong clues to the functions of the underlying genes and could allow annotation of the millions of sequenced yet uncharacterized bacterial genes. However, it is not known how many genes have a phenotype under laboratory conditions, how many phenotypes are biologically interpretable for predicting gene function, and what experimental conditions are optimal to maximize the number of genes with a phenotype. To address these issues, we measured the mutant fitness of 1,586 genes of the ethanol-producing bacterium Zymomonas mobilis ZM4 across 492 diverse experiments and found statistically significant phenotypes for 89% of all assayed genes. Thus, inmore »Z. mobilis, most genes have a functional consequence under laboratory conditions. We demonstrate that 41% of Z. mobilis genes have both a strong phenotype and a similar fitness pattern (cofitness) to another gene, and are therefore good candidates for functional annotation using mutant fitness. Among 502 poorly characterized Z. mobilis genes, we identified a significant cofitness relationship for 174. For 57 of these genes without a specific functional annotation, we found additional evidence to support the biological significance of these gene-gene associations, and in 33 instances, we were able to predict specific physiological or biochemical roles for the poorly characterized genes. Last, we identified a set of 79 diverse mutant fitness experiments in Z. mobilis that are nearly as biologically informative as the entire set of 492 experiments. Therefore, our work provides a blueprint for the functional annotation of diverse bacteria using mutant fitness.« less

  18. Copying Maple graphs into Word Once you create a graph with Maple, you can copy and paste it into Word pretty

    E-Print Network [OSTI]

    Zirbel, Craig L.

    Copying Maple graphs into Word Once you create a graph with Maple, you can copy and paste it into Word pretty easily. However, you might be unhappy with the result, if it looks like this: This image to get the image into Word in a better way. Below are two Maple graphs. On a Macintosh, you can click

  19. Should genes with missing data be excluded from phylogenetic Wei Jiang a,b,c

    E-Print Network [OSTI]

    Wiens, John J.

    their studies to maximize the number of genes included but minimize the overall amount of missing data. However genes). Detailed analyses suggest that adding incom- plete genes is especially helpful for resolving taxa and genes are deliberately excluded in order to avoid them. For example, the issue of missing data

  20. Number Theory Seminar

    E-Print Network [OSTI]

    $author.value

    2014-12-03

    Dec 3, 2014 ... TBA, Rachel Davis ... September 26, Rachel Davis .... Dessins d'Enfants · Indiana Pi Bill · Notes and Publications · Number Theory Seminar ...

  1. On-chip single-copy real-time reverse-transcription PCR in isolated picoliter droplets

    SciTech Connect (OSTI)

    Beer, N R; Wheeler, E; Lee-Houghton, L; Watkins, N; Nasarabadi, S; Hebert, N; Leung, P; Arnold, D; Bailey, C; Colston, B

    2007-12-19

    The first lab-on-chip system for picoliter droplet generation and RNA isolation, followed by reverse transcription, and PCR amplification with real-time fluorescence detection in the trapped droplets has been developed. The system utilized a shearing T-junction in a fused silica device to generate a stream of monodisperse picoliter-scale droplets that were isolated from the microfluidic channel walls and each other by the oil phase carrier. An off-chip valving system stopped the droplets on-chip, allowing thermal cycling for reverse transcription and subsequent PCR amplification without droplet motion. This combination of the established real-time reverse transcription-PCR assay with digital microfluidics is ideal for isolating single-copy RNA and virions from a complex environment, and will be useful in viral discovery and gene-profiling applications.

  2. Identification of endometrial genes important for conceptus survival and development in sheep 

    E-Print Network [OSTI]

    Gray, Catherine Allison

    2005-08-29

    from Day 14 cyclic, pregnant, and bred UGKO ewes, as well as ewes treated with interferon tau (IFN??) and progesterone, to identify genes important for conceptus development. A number of novel and previously known IFN??-stimulated genes, as well...

  3. Author's personal copy Distributed hydrogen production from ethanol in a microfuel processor

    E-Print Network [OSTI]

    Khandekar, Sameer

    Author's personal copy Distributed hydrogen production from ethanol in a microfuel processor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 525 2. Methods of hydrogen production . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 525 2.4. Bio-hydrogen

  4. Regulation of chloroplast number and DNA synthesis in higher plants. Final report, August 1995--August 1996

    SciTech Connect (OSTI)

    Mullet, J.E.

    1997-06-17

    The long term objective of this research is to understand the process of chloroplast development and its coordination with leaf development in higher plants. This is important because the photosynthetic capacity of plants is directly related to leaf and chloroplast development. This research focused on obtaining a detailed description of leaf development and the early steps in chloroplast development including activation of plastid DNA synthesis, changes in plastid DNA copy number, activation of chloroplast transcription and increases in plastid number per cell. The research focused on the isolation of the plastid DNA polymerase, and identification of genetic mutants which are altered in their accumulation of plastid DNA and plastid number per cell.

  5. Big Numbers | Jefferson Lab

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    with a length of 35 cm, which certainly helps . With Avogadro's number and the density of liquid hydrogen, we have about 1024 protons per cm2. We then take the beam of 160...

  6. KPA Activity Number

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    September 2002 Page 1 KPA Activity Number KPA Activity SEM Section SME Work Product SQSE Web Site http:cio.doe.govsqse REQUIREMENTS MANAGEMENT RM-1 The software engineering...

  7. Generic copy of DOE's IDIQ ESPC contract | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on Delicious Rank EERE: Alternative Fuelsof Energy Services »Information ResourcesHeatGeneric copy of DOE's IDIQ ESPC

  8. Report number codes

    SciTech Connect (OSTI)

    Nelson, R.N.

    1985-05-01

    This publication lists all report number codes processed by the Office of Scientific and Technical Information. The report codes are substantially based on the American National Standards Institute, Standard Technical Report Number (STRN)-Format and Creation Z39.23-1983. The Standard Technical Report Number (STRN) provides one of the primary methods of identifying a specific technical report. The STRN consists of two parts: The report code and the sequential number. The report code identifies the issuing organization, a specific program, or a type of document. The sequential number, which is assigned in sequence by each report issuing entity, is not included in this publication. Part I of this compilation is alphabetized by report codes followed by issuing installations. Part II lists the issuing organization followed by the assigned report code(s). In both Parts I and II, the names of issuing organizations appear for the most part in the form used at the time the reports were issued. However, for some of the more prolific installations which have had name changes, all entries have been merged under the current name.

  9. Author's personal copy Progress in Particle and Nuclear Physics 62 (2009) 468472

    E-Print Network [OSTI]

    Bauer, Wolfgang

    2009-01-01

    Author's personal copy Progress in Particle and Nuclear Physics 62 (2009) 468­472 Contents lists available at ScienceDirect Progress in Particle and Nuclear Physics journal homepage: www.ppnp.2008.12.035 #12;Author's personal copy T. Strother, W. Bauer / Progress in Particle and Nuclear Physics

  10. PROOF COPY [BP10610] 133839PRB [BP10610]133839PRB

    E-Print Network [OSTI]

    Adler, Joan

    PROOF COPY [BP10610] 133839PRB PROOF COPY [BP10610]133839PRB Simulation of nanodiamond 2008 Hydrogen plays a significant role in the formation of nanodiamond, terminating diamond surfaces, there are only few calculations that simulate nanodiamond development directly and even less that do so

  11. DOT WEB PAGES (plain text) 1 DOT WWW Pages --Plain Text Copy June 17, 2015

    E-Print Network [OSTI]

    Rutten, Rob

    DOT WEB PAGES (plain text) 1 DOT WWW Pages -- Plain Text Copy ­ June 17, 2015 http . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 28 8 pdf copies of these pages 29 Welcome to the DOT web pages! The Dutch Open Telescope on La Palma observing: wiki external usage webcam #12;DOT WEB PAGES (plain text) 2 1 DOT news · January 2012: Utrecht

  12. PROOF COPY 034509PHP Effectiveness of electron-cyclotron and transmission resonant heating

    E-Print Network [OSTI]

    Kaganovich, Igor

    condition. For a low rf, the ECR heating is not effective. Conditions of strong transmission resonancesPROOF COPY 034509PHP PROOF COPY 034509PHP Effectiveness of electron-cyclotron and transmission resonant heating in inductively coupled plasmas Oleg V. Polomarov and Constantine E. Theodosiou University

  13. PROOF COPY 003305JCP Second-order quadrupole-shielding effects in magic-angle spinning

    E-Print Network [OSTI]

    Frydman, Lucio

    PROOF COPY 003305JCP PROOF COPY 003305JCP Second-order quadrupole-shielding effects in magic interaction can give rise to shielding-derived terms that are not entirely averaged away by conventional magic-order quadrupole effects makes such quadrupole-shielding cross-terms observable. Although this may present

  14. PROOF COPY 007140JCP Quadrupolar-shielding cross-correlations in solid state nuclear

    E-Print Network [OSTI]

    Frydman, Lucio

    PROOF COPY 007140JCP PROOF COPY 007140JCP Quadrupolar-shielding cross-correlations in solid state nuclear magnetic resonance NMR , from cross-correlations between the quadrupolar and shielding couplings of the shielding interaction into the realm of conventional detection. Such terms include the antisymmetric

  15. Alternative pre-mRNA splicing switches modulate gene expression in late erythropoiesis

    E-Print Network [OSTI]

    Yamamoto, Miki L.

    2009-01-01

    Alternative Pre-mRNA Splicing Switches Modulate GeneErythroid Stage-Specific Alternative Splicing Number ofin promoter use and alternative splicing that have important

  16. UCGE Reports Number 20284

    E-Print Network [OSTI]

    Calgary, University of

    ABSTRACT Oil and gas are global fuels obtained primarily from drilling wells in underground terrestrial reservoirs. Vertical drilling is preferred because of its simplicity and therefore low cost, but subsurfaceUCGE Reports Number 20284 Department of Geomatics Engineering Continuous Measurement-While-Drilling

  17. Student Code Number: Thermodynamics

    E-Print Network [OSTI]

    Feeny, Brian

    Student Code Number: Thermodynamics Ph.D. Qualifying Exam Department of Mechanical Engineering;Thermodynamics Qualifier January 2013 Problem 1 Air is compressed in an axial-flow compressor operating at steady of exergy destruction within the compressor, in kJ per kg of air flowing. #12;Thermodynamics Qualifier

  18. UCGE Reports Number 20146

    E-Print Network [OSTI]

    Calgary, University of

    in considerable operational cost savings for many exploration and open-pit mining companies in the energy sectorUCGE Reports Number 20146 Department of Geomatics Engineering Development of a Mobile Equipment Equipment Management System solution. In the open-pit mining industries there is a need for these companies

  19. Australia NO REGISTRATION NUMBER

    E-Print Network [OSTI]

    Portugal Romania Slovenia Spain Turkey UK USA Australia Austria Belgium Cyprus France Germany Greece#12;#12;Australia Austria Belgium Cyprus France Germany Greece Ireland Italy Japan Macedonia Ireland Italy Japan Macedonia Portugal Romania Slovenia Spain Turkey UK USA #12;NO REGISTRATION NUMBER 1

  20. Non-random gene flow: an underappreciated force in evolution

    E-Print Network [OSTI]

    Bolnick, Daniel I.

    , adaptation to climate change, biological invasion, and speciation. Giv- en the possible ubiquity and impacts-random gene flow and to more fully incorporate its effects into theory. Rethinking the homogenizing effect of gene flow Theory suggests that evolutionary change depends on the action of a limited number

  1. Mining gene sets for measuring similarities CHRISTINE NARDINI1

    E-Print Network [OSTI]

    Nardini, Christine

    Mining gene sets for measuring similarities CHRISTINE NARDINI1 , DANIELE MASOTTI2 , SUNGROH YOON3 and data mining of these new, large types of data. The proliferation of devices able to process in paral of number of genes under different environmental conditions. Data mining algorithms demanded to the analysis

  2. Speeding disease gene discovery by sequence based candidate prioritization 

    E-Print Network [OSTI]

    Adie, Euan A; Adams, Richard R; Evans, Kathryn L; Porteous, David; Pickard, Ben S

    2005-03-14

    Background: Regions of interest identified through genetic linkage studies regularly exceed 30 centimorgans in size and can contain hundreds of genes. Traditionally this number is reduced by matching functional annotation ...

  3. Integration of copy number and transcriptomics provides risk stratification in prostate cancer: a discovery and validation cohort study

    E-Print Network [OSTI]

    Ross-Adams, H.; Lamb, A. D.; Dunning, M. J.; Halim, S.; Lindberg, J.; Massie, C. M.; Egevad, L. A.; Russell, R.; Ramos-Montoya, A.; Vowler, S. L.; Sharma, N. L.; Kay, J.; Whitaker, H.; Clark, J.; Hurst, R.; Gnanapragasam, V. J.; Shah, N. C.; Warren, A. Y.; Cooper, C. S.; Lynch, A. G.; Stark, R.; Mills, I. G.; Grönberg, H.; Neal, D. E.

    2015-01-01

    ), and positive surgical margins (PSM). We also compared each subgroup to the best outcome cluster (iCluster4) (Fig. 4D), in a combined analysis of the Cambridge and Stockholm data sets, to ensure sufficient power for robust statistical testing37. We found... that iClusters1 and 3 identified men with the highest risk of relapse more effectively than either elevated Gleason score (?4+3), high PSA, ECE or PSM. Genomic features of the molecular subtypes identified In both the Cambridge and Stockholm...

  4. CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data

    E-Print Network [OSTI]

    Liu, Xiaole Shirley

    detected from aCGH are *To whom correspondence should be addressed. Tel: +1 617 632 3012, +1 617 632 3498. Tel: +1 617 632 3012, +1 617 632 3498; Fax: +1 617 632 2444; Email: cli@hsph.harvard.edu Present

  5. The naphthalene catabolic (nag) genes of Polaromonas naphthalenivorans CJ2: Evolutionary implications for two gene clusters and novel regulatory control

    SciTech Connect (OSTI)

    Jeon, C.O.; Park, M.; Ro, H.S.; Park, W.; Madsen, E.L.

    2006-02-15

    Polaromonas naphthalenivorans CJ2, found to be responsible for the degradation of naphthalene in situ at a coal tar waste-contaminated site, is able to grow on mineral salts agar media with naphthalene as the sole carbon source. Beginning from a 484-bp nagAc-like region, we used a genome walking strategy to sequence genes encoding the entire naphthalene degradation pathway and additional flanking regions. We found that the naphthalene catabolic genes in P. naphthalenivorans CJ2 were divided into one large and one small gene cluster, separated by an unknown distance. The large gene cluster is bounded by a LysR-type regulator (nagR). The small cluster is bounded by a MarR-type regulator (nagR2). The catabolic genes of P. naphthalenivorans CJ2 were homologous to many of those of Ralstonia U2, which uses the gentisate pathway to convert naphthalene to central metabolites. However, three open reading frames (nagY, nagM, and nagN), present in Ralstonia U2, were absent. Also, P. naphthalenivorans carries two copies of gentisate dioxygenase (nagI) with 77.4% DNA sequence identity to one another and 82% amino acid identity to their homologue in Ralstonia sp. strain U2. Investigation of the operons using reverse transcription PCR showed that each cluster was controlled independently by its respective promoter. Insertional inactivation and lacZ reporter assays showed that nagR2 is a negative regulator and that expression of the small cluster is not induced by naphthalene, salicylate, or gentisate. Association of two putative Azoarcus-related transposases with the large cluster and one Azoarcus-related putative salicylate 5-hydroxylase gene (ORF2) in the small cluster suggests that mobile genetic elements were likely involved in creating the novel arrangement of catabolic and regulatory genes in P. naphthalenivorans.

  6. Quantum random number generator

    E-Print Network [OSTI]

    M. Stipcevic; B. Medved Rogina

    2007-01-01

    We report upon a novel principle for realization of a fast nondeterministic random number generator whose randomness relies on intrinsic randomness of the quantum physical processes of photonic emission in semiconductors and subsequent detection by the photoelectric effect. Timing information of detected photons is used to generate binary random digits-bits. The bit extraction method based on restartable clock theoretically eliminates both bias and autocorrelation while reaching efficiency of almost 0.5 bits per random event. A prototype has been built and statistically tested.

  7. Neither Name, Nor Number

    E-Print Network [OSTI]

    Federico Holik

    2011-12-20

    Since its origins, Quantum mechanics has presented problems with the concept of individuality. It is argued that quantum particles do not have individuality, and so, one can speak about "entities without identity". On the contrary, we claim that the problem of quantum non individuality goes deeper, and that one of its most important features is the fact that there are quantum systems for which particle number is not well defined. In this work, we continue this discussion in relation to the problem about the one and the many.

  8. There exist graphs with super-exponential Ramsey multiplicity The Ramsey multiplicity M(G; n) of a graph G is the minimum number of monochromatic

    E-Print Network [OSTI]

    Fox, Jacob

    There exist graphs with super-exponential Ramsey multiplicity constant Jacob Fox Abstract The Ramsey multiplicity M(G; n) of a graph G is the minimum number of monochromatic copies of G over all 2, it is natural to define the Ramsey multiplicity constant C(G) to be limn M(G;n)a v!(n v) , which is the limit

  9. Towards an informative mutant phenotype for every bacterial gene

    SciTech Connect (OSTI)

    Deutschbauer, Adam; Price, Morgan N.; Wetmore, Kelly M.; Tarjan, Daniel R.; Xu, Zhuchen; Shao, Wenjen; Leon, Dacia; Arkin, Adam P.; Skerker, Jeffrey M.

    2014-08-11

    Mutant phenotypes provide strong clues to the functions of the underlying genes and could allow annotation of the millions of sequenced yet uncharacterized bacterial genes. However, it is not known how many genes have a phenotype under laboratory conditions, how many phenotypes are biologically interpretable for predicting gene function, and what experimental conditions are optimal to maximize the number of genes with a phenotype. To address these issues, we measured the mutant fitness of 1,586 genes of the ethanol-producing bacterium Zymomonas mobilis ZM4 across 492 diverse experiments and found statistically significant phenotypes for 89% of all assayed genes. Thus, in Z. mobilis, most genes have a functional consequence under laboratory conditions. We demonstrate that 41% of Z. mobilis genes have both a strong phenotype and a similar fitness pattern (cofitness) to another gene, and are therefore good candidates for functional annotation using mutant fitness. Among 502 poorly characterized Z. mobilis genes, we identified a significant cofitness relationship for 174. For 57 of these genes without a specific functional annotation, we found additional evidence to support the biological significance of these gene-gene associations, and in 33 instances, we were able to predict specific physiological or biochemical roles for the poorly characterized genes. Last, we identified a set of 79 diverse mutant fitness experiments in Z. mobilis that are nearly as biologically informative as the entire set of 492 experiments. Therefore, our work provides a blueprint for the functional annotation of diverse bacteria using mutant fitness.

  10. Supplementary Information: A Simple and Ecient Algorithm for Gene Selection using Sparse Logistic Regression

    E-Print Network [OSTI]

    Keerthi, S. Sathiya

    . The pseudocode for the proposed gene selection algorithm is also given. Di#11;erent variables and equations for the discovery genes overexpressed in ovarian carcinomas. Gene, 238, 375{385. Pseudocode for the Algorithm Notes for the pseudocode given below: 1. The index i runs over the number of examples while the index j runs over

  11. On Some Zarankiewicz Numbers and Bipartite Ramsey Numbers for

    E-Print Network [OSTI]

    Radziszowski, Stanislaw P.

    On Some Zarankiewicz Numbers and Bipartite Ramsey Numbers for Quadrilateral Janusz Dybizba Ramsey number b(n1, · · · , nk) is the least positive integer b such that any coloring of the edges of Kb Ramsey numbers avoiding quadrilateral. In particular, we prove that b4(2) = 19, and establish new general

  12. Field Notes and Specimen Catalog, Numbers 1-54 (1933) 

    E-Print Network [OSTI]

    Davis, William B.

    2012-04-09

    . F r e d 3 H e n d r i c k , ' I Library D e p t . W fS f TAMJ ?J o l l e - c e S t a . , T X HQi '------------ 1 f New LO Repeat ? Color No. 990 ,1 Stamping: Follow Enclosed Xerox - I Copy of Spine or Tissue Rub CX LB1 Standardized... Numbers 1 - 5 4 )N 1 9 3 3 WBD % 1 7 Special Instructions: S e e 1 9 3 3 - 3 4 v o l f o r a p i n e >v Golden Crowned Sparrow, 3-25,4-8, p* Point Pinos Junco, 3-4,3-18,4-8. Oregon Junco, 1-22, 3-25, >* Song Sparrow, 1-22, 1-31, 2-4, 3-9, 3...

  13. For permission to copy, contact editing@geosociety.org 2004 Geological Society of America 463

    E-Print Network [OSTI]

    González, Luis A.

    For permission to copy, contact editing@geosociety.org 2004 Geological Society of America 463 GSA that these were poorly drained, reducing, hydromorphic soils that developed in coal-bearing delta plain facies

  14. Author's personal copy Thorium-234 as a tracer of spatial, temporal and vertical variability

    E-Print Network [OSTI]

    Buesseler, Ken

    Author's personal copy Thorium-234 as a tracer of spatial, temporal and vertical variability 2009 Accepted 6 April 2009 Available online 16 April 2009 Keywords: Thorium-234 Particle flux Sediment

  15. Author's personal copy Mesoscale modeling of electric double layer capacitors with three-dimensional

    E-Print Network [OSTI]

    Pilon, Laurent

    Author's personal copy Mesoscale modeling of electric double layer capacitors with three Mesoscale modeling Mesoporous electrodes a b s t r a c t This paper presents general mathematical

  16. Author's personal copy Unified behaviour of maximum soot yields of methane, ethane and propane

    E-Print Network [OSTI]

    Gülder, Ömer L.

    Author's personal copy Unified behaviour of maximum soot yields of methane, ethane and propane the current study and the previous measurements in similar flames with methane, ethane, and propane flames

  17. ESMN Solar Magnetism ESMN Pages --Plain Text Copy August 13, 2011

    E-Print Network [OSTI]

    Rutten, Rob

    1 European Network ESMN Solar Magnetism ESMN Pages -- Plain Text Copy ­ August 13, 2011 http . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 2.2 Structure and dynamics of solar surface fields. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 2.3 Topology and evolution of solar active regions

  18. Author's personal copy Beryllium-10 terrestrial cosmogenic nuclide surface exposure dating of Quaternary

    E-Print Network [OSTI]

    Frankel, Kurt L.

    Author's personal copy Beryllium-10 terrestrial cosmogenic nuclide surface exposure dating Terrestrial cosmogenic nuclides Optically stimulated luminescence Alluvial fans Shore lines Lake Manly nuclide (TCN) surface exposure methods in Death Valley. The 10 Be TCN ages show considerable variance

  19. Author's personal copy Initial anisotropy in demineralized bovine cortical bone in compressive

    E-Print Network [OSTI]

    McKittrick, Joanna

    Author's personal copy Initial anisotropy in demineralized bovine cortical bone in compressive Cortical bone Cyclic compression Demineralization The mechanical properties of demineralized bovine and transverse directions. The bone was demineralized by 10% ethylenediaminetetraacetic acid (EDTA) (100% protein

  20. Copies: Department, Lender, Contracts & Real Estate, Risk Services Revised 12/2012 University of California, Merced

    E-Print Network [OSTI]

    Oviedo, Néstor J.

    Copies: Department, Lender, Contracts & Real Estate, Risk Services Revised 12/2012 University is over: Lender Information: Name: Address:__________________________________________ Phone: Fax: ______________Email:__________________________ Contact Person if Other than Lender: ______________________ Contact

  1. Human retinoblastoma gene

    SciTech Connect (OSTI)

    Bookstein, R.; Lee, E.Y.H.P.; Peccei, A.; Lee, W.H. (Dept. of Pathology M-012 and Center for Molecular Genetics, Univ. of California, San Diego, La Jolla, CA (US))

    1989-04-01

    Mutational inactivation of the retinoblastoma (RB) gene is considered a fundamental event in the formation of several types of human cancer. A substantial proportion of RB gene mutations are partial or complete deletions that extend an unknown distance beyond one or both ends of the gene. To provide a framework for measuring the extent of these deletions, the authors have constructed a long-range restriction map of SfiI sites spanning 850 kilobases around the RB gene. This map was applied in a molecular analysis of RB gene deletion in breast cancer cell line MB468. A previous study of this cell line demonstrated deletion of the entire RB gene except for exons 1 and 2. Genomic clones containing the deletion junction were isolated from a library made from MB468 DNA. A probe obtained from the far side of the deletion junction was used to localize and clone the unknown 3' endpoint, demonstrating that the chromosomal mutation in this case was a simple deletion spanning 200 kilobases. Sequence analysis of the deletion junction indicated a conservative deletion with no loss or gain of nucleotides. The deletion endpoints had no sequence homology to each other or to any repetitive sequence family, such as Alu, so the recombination event was illegitimate. Structural analysis of this and other RB gene deletions is important for understanding molecular mechanisms of recessive oncogenesis.

  2. EEO/AA Institution. 10,000 copies of this public document were printed at a cost of $X,XXX or $.XX per copy. OFFICE OF ADMISSIONS

    E-Print Network [OSTI]

    Olszewski Jr., Edward A.

    EEO/AA Institution. 10,000 copies of this public document were printed at a cost of $X,XXX or $.XX in campus through student organizations, academic and/or social opportunities, and meeting new friends for fall entry. Additional first-year students may be offered admission in our First Year Spring Admit

  3. The Distribution of Ramsey Numbers

    E-Print Network [OSTI]

    Lane Clark; Frank Gaitan

    2014-11-10

    We prove that the number of integers in the interval [0,x] that are non-trivial Ramsey numbers r(k,n) (3 <= k <= n) has order of magnitude (x ln x)**(1/2).

  4. Ordered Ramsey numbers David Conlon

    E-Print Network [OSTI]

    Fox, Jacob

    Ordered Ramsey numbers David Conlon Jacob Fox Choongbum Lee Benny Sudakov§ Abstract Given a labeled graph H with vertex set {1, 2, . . . , n}, the ordered Ramsey number r with vertices appearing in the same order as in H. The ordered Ramsey number of a labeled graph H is at least

  5. Hypergraph Ramsey numbers David Conlon

    E-Print Network [OSTI]

    Fox, Jacob

    Hypergraph Ramsey numbers David Conlon Jacob Fox Benny Sudakov Abstract The Ramsey number rk(s, n). In this paper we obtain new estimates for several basic hypergraph Ramsey problems. We give a new upper bound-color Ramsey number r3(n, n, n), which is the minimum N such that every 3-coloring of the triples

  6. Data Compression with Prime Numbers

    E-Print Network [OSTI]

    Gordon Chalmers

    2005-11-16

    A compression algorithm is presented that uses the set of prime numbers. Sequences of numbers are correlated with the prime numbers, and labeled with the integers. The algorithm can be iterated on data sets, generating factors of doubles on the compression.

  7. Microfluidic gene synthesis

    E-Print Network [OSTI]

    Kong, David Sun, 1979-

    2008-01-01

    The ability to synthesize custom de novo DNA constructs rapidly, accurately, and inexpensively is highly desired by researchers, as synthetic genes and longer DNA constructs are enabling to numerous powerful applications ...

  8. UNO Student ID Number__________________________________________________________________ Permanent Mailing Address________________________________________________________________

    E-Print Network [OSTI]

    Li, X. Rong

    UNO Graduate Other adult occupants must be either a spouse, domestic partner, or a relative that is a full-time UNO student and at least 21 years old at the time of application. If applicable, a copy.00. Personal Information Other Adult Occupant LAST FIRST MIDDLE Mailing Address: UNO Office of Student Housing

  9. Compendium of Experimental Cetane Numbers

    SciTech Connect (OSTI)

    Yanowitz, J.; Ratcliff, M. A.; McCormick, R. L.; Taylor, J. D.; Murphy, M. J.

    2014-08-01

    This report is an updated version of the 2004 Compendium of Experimental Cetane Number Data and presents a compilation of measured cetane numbers for pure chemical compounds. It includes all available single compound cetane number data found in the scientific literature up until March 2014 as well as a number of unpublished values, most measured over the past decade at the National Renewable Energy Laboratory. This Compendium contains cetane values for 389 pure compounds, including 189 hydrocarbons and 201 oxygenates. More than 250 individual measurements are new to this version of the Compendium. For many compounds, numerous measurements are included, often collected by different researchers using different methods. Cetane number is a relative ranking of a fuel's autoignition characteristics for use in compression ignition engines; it is based on the amount of time between fuel injection and ignition, also known as ignition delay. The cetane number is typically measured either in a single-cylinder engine or a constant volume combustion chamber. Values in the previous Compendium derived from octane numbers have been removed, and replaced with a brief analysis of the correlation between cetane numbers and octane numbers. The discussion on the accuracy and precision of the most commonly used methods for measuring cetane has been expanded and the data has been annotated extensively to provide additional information that will help the reader judge the relative reliability of individual results.

  10. Direct observations of DNA provides new insights into how genetic material is copied and repaired News-Medical.Net

    E-Print Network [OSTI]

    Kowalczykowski, Stephen C.

    Direct observations of DNA provides new insights into how genetic material is copied and repaired News-Medical.Net · Home Page Direct observations of DNA provides new insights into how genetic material to a Friend Direct observations of DNA are giving new insights into how genetic material is copied

  11. Number

    Office of Legacy Management (LM)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield Municipal Gas &SCE-SessionsSouthReport for the Weldon Spring,7=cr5rnP 7694 i+lJNew York,' , /v-i 2

  12. Pipeline MT Instructions Identification Number

    E-Print Network [OSTI]

    Hong, Don

    Pipeline MT Instructions Identification Number For identification purposes, you will be assigned a special identification number. M# You can activate your MT email, login to PipelineMT to register for classes or pay tuition and fees. Activating the MTSU Email and PipelineMT accounts: Visit the website

  13. Mechanisms of radiation-induced gene responses

    SciTech Connect (OSTI)

    Woloschak, G.E.; Paunesku, T.

    1996-10-01

    In the process of identifying genes differentially expressed in cells exposed ultraviolet radiation, we have identified a transcript having a 26-bp region that is highly conserved in a variety of species including Bacillus circulans, yeast, pumpkin, Drosophila, mouse, and man. When the 5` region (flanking region or UTR) of a gene, the sequence is predominantly in +/+ orientation with respect to the coding DNA strand; while in the coding region and the 3` region (UTR), the sequence is most frequently in the +/-orientation with respect to the coding DNA strand. In two genes, the element is split into two parts; however, in most cases, it is found only once but with a minimum of 11 consecutive nucleotides precisely depicting the original sequence. The element is found in a large number of different genes with diverse functions (from human ras p21 to B. circulans chitonase). Gel shift assays demonstrated the presence of a protein in HeLa cell extracts that binds to the sense and antisense single-stranded consensus oligomers, as well as to the double- stranded oligonucleotide. When double-stranded oligomer was used, the size shift demonstrated as additional protein-oligomer complex larger than the one bound to either sense or antisense single-stranded consensus oligomers alone. It is speculated either that this element binds to protein(s) important in maintaining DNA is a single-stranded orientation for transcription or, alternatively that this element is important in the transcription-coupled DNA repair process.

  14. Spectral Clustering Gene Ontology Terms to Group Genes by Function

    E-Print Network [OSTI]

    Zell, Andreas

    Spectral Clustering Gene Ontology Terms to Group Genes by Function Nora Speer, Christian Spieth­12, 2005. c Springer-Verlag Berlin Heidelberg 2005 #12;2 N. Speer, C. Spieth, and A. Zell part-of is-a GO

  15. Types of random numbers and Monte Carlo Methods Pseudorandom number generation

    E-Print Network [OSTI]

    Mascagni, Michael

    Types of random numbers and Monte Carlo Methods Pseudorandom number generation Quasirandom number generation Conclusions WE246: Random Number Generation A Practitioner's Overview Prof. Michael Mascagni #12;Types of random numbers and Monte Carlo Methods Pseudorandom number generation Quasirandom number

  16. Gene expression heterogeneous

    E-Print Network [OSTI]

    Khaitovich, Philipp

    that phenotypic variation among individuals and among somatic cells increases with age [1­5]. However, no evidence for an age-dependent increase in variation in gene expression has yet been found [6­9]. Using eight published with this article online). We found that the proportion of probe sets showing a positive

  17. Gene expression profiles of Nitrosomonas europaea, an obligate chemolitotroph

    SciTech Connect (OSTI)

    Daniel J. Arp

    2005-05-25

    Nitrosomonas europaea is an aerobic lithoautotrophic bacterium that uses ammonia (NH3) as its energy source. As a nitrifier, it is an important participant in the nitrogen cycle, which can also influence the carbon cycle. The focus of this work was to explore the genetic structure and mechanisms underlying the lithoautotrophic growth style of N. europaea. Whole genome gene expression: The gene expression profile of cells in exponential growth and during starvation was analyzed using microarrays. During growth, 98% of the genes increased in expression at least two fold compared to starvation conditions. In growing cells, approximately 30% of the genes were expressed eight fold higher, Approximately 10% were expressed more than 15 fold higher. Approximately 3% (91 genes) were expressed to more than 20 fold of their levels in starved cells. Carbon fixation gene expression: N. europaea fixes carbon via the Calvin-Benson-Bassham (CBB) cycle via a type I ribulose bisphosphate carboxylase/oxygenase (RubisCO). This study showed that transcription of cbb genes was up-regulated when the carbon source was limited, while amo, hao and other energy harvesting related genes were down-regulated. Iron related gene expression: Because N. europaea has a relatively high content of hemes, sufficient Fe must be available in the medium for it to grow. The genome revealed that approximately 5% of the coding genes in N. europaea are dedicated to Fe transport and assimilation. Nonetheless, with the exception of citrate biosynthesis genes, N. europaea lacks genes for siderophore production. The Fe requirements for growth and the expression of the putative membrane siderophore receptors were determined. The N. europaea genome has over 100 putative genes ({approx}5% of the coding genes) related to Fe uptake and its siderophore receptors could be grouped phylogenetically in four clusters. Fe related genes, such as a number of TonB-dependent Fe-siderophore receptors for ferrichrome and enterobactin, and diffusion protein OmpC were expressed to higher levels under Fe limitation. N. europaea has a high Fe requirement and under Fe limiting conditions (0.2 {micro}M), is capable to assimilate up to 70% of the available Fe without the ability to produce siderophores.

  18. Structure and chromosomal localization of the human gene of the phosphotyrosyl phosphatase activator (PTPA) of protein phosphatase 2A

    SciTech Connect (OSTI)

    Van Hoof, C.; Cayla, X.; Merlevede, W.; Goris, J. [Katholieke Universiteit Leuven, Parish (France)] [and others] [Katholieke Universiteit Leuven, Parish (France); and others

    1995-07-20

    The PTPA gene encodes a specific phosphotyrosyl phosphatase activator of the dimeric form of protein phosphatase 2A. PTPA, cloned from human genomic libraries, is encoded by one single-copy gene, composed of 10 exons and 9 introns with a total length of about 60 kb. The transcription start site was determined, and the 5{prime} flanking sequence was analyzed for its potential as a promotor. This region lacks a TATA sequence in the appropriate position relative to the transcription start, is very GC-rich, and contains upstream of the transcription start four Sp1 sites, a feature common to many TATA-less promotors. Based on the homology with DNA binding consensus sequences of transcription factors, we identified in this promotor region several putative DNA binding sites for transcription factors, such as NF-{kappa}B, Myb, Ets-1, Myc, and ATF. Transfection experiments with a construct containing the PTPA promotor region inserted 5{prime} of a luciferase reporter gene revealed that the 5{prime} flanking sequence of the PTPA gene indeed displayed promotor activity that seems to be cell-line dependent. By fluorescence in situ hybridization and G-banding, the PTPA gene was localized to the 9q34 region. The PTPA gene is positioned centromeric of c-abl in a region embracing several genes implicated in oncogenesis. 28 refs., 8 figs., 1 tab.

  19. Intervention in gene regulatory networks 

    E-Print Network [OSTI]

    Choudhary, Ashish

    2006-10-30

    In recent years Boolean Networks (BN) and Probabilistic Boolean Networks (PBN) have become popular paradigms for modeling gene regulation. A PBN is a collection of BNs in which the gene state vector transitions according to the rules of one...

  20. Author's personal copy The effects of outgassing on the transition between effusive and explosive

    E-Print Network [OSTI]

    Manga, Michael

    Author's personal copy The effects of outgassing on the transition between effusive and explosive 2012 Editor: T. Elliot Keywords: Effusive­explosive transition Conduit Textures Permeability Outgassing a b s t r a c t The eruption style of silicic magmas is affected by the loss of gas (outgassing

  1. Author's personal copy Sensitivity of the Atlantic Ocean circulation to a hydraulic overflow

    E-Print Network [OSTI]

    Levermann, Anders

    Author's personal copy Sensitivity of the Atlantic Ocean circulation to a hydraulic overflow the explicit representation of the overflows using a parameterisation by hydraulic constraints and compare circulation (AMOC) (Redler and Böning, 1997; Kuhlbrodt et al., 2007). The potential energy stored in the dense

  2. Author's personal copy The Lago Cardiel Basin, Argentina (49S): Origin and evolution

    E-Print Network [OSTI]

    Gilli, Adrian

    Author's personal copy The Lago Cardiel Basin, Argentina (49°S): Origin and evolution revealed with an airgun source in the closed lake system of Lago Cardiel, Argentina (49°S). As part of an ongoing study reflection surveys in the closed lake system of Lago Cardiel, Argentina (Fig. 1), with 3.5-kHz and boomer

  3. Author's personal copy A novel ocean color index to detect oating algae in the global oceans

    E-Print Network [OSTI]

    Meyers, Steven D.

    Author's personal copy A novel ocean color index to detect oating algae in the global oceans December 2008 Received in revised form 15 May 2009 Accepted 23 May 2009 Keywords: Floating Algae Index (FAI Remote sensing Ocean color Climate data record Various types of oating algae have been reported in open

  4. Copyright will be provided by the publisher Review copy not for distribution

    E-Print Network [OSTI]

    Rodwell, Mark J. W.

    56 57 Review copy ­ not for distribution (pss-logo will be inserted here by the publisher) pss , Yanning Sun3 , Edward W. Kiewra3 , Brian J. Thibeault1 , Arthur C. Gossard1,2 , Chris J. Palmstrøm1 was the cause for high source resistance. The gap in the regrowth was because of low growth temperature (400 º

  5. Author's personal copy Current status and outlook for silicon-based optical biosensors

    E-Print Network [OSTI]

    Weiss, Sharon

    Author's personal copy Current status and outlook for silicon-based optical biosensors S.M. Weiss a. The advantages of these silicon-based optical biosensors for high sensitivity detection include a low analyte silicon waveguide biosensors. Sections 3 and 4 highlight more conventional silicon photonics technology

  6. Author's personal copy Methane evolution from UV-irradiated spacecraft materials under simulated

    E-Print Network [OSTI]

    Schuerger, Andrew C.

    Author's personal copy Methane evolution from UV-irradiated spacecraft materials under simulated a b s t r a c t Fifteen organic and three inorganic compounds were tested for methane (CH4) evolution methane at the min- imum detection level 0.5 ppm, or above. In contrast, all organic compounds evolved

  7. Author's personal copy People, oceans and scale: governance, livelihoods and climate

    E-Print Network [OSTI]

    Charles, Anthony

    Author's personal copy People, oceans and scale: governance, livelihoods and climate change­ecological systems perspective. Several key themes are examined: governance and decision-making, livelihoods and well scales, from the local to the global. While much attention in the literature lies on global and large

  8. Author's personal copy C H A P T E R 9

    E-Print Network [OSTI]

    Niu, Fenglin

    Rice University c Carnegie Institute Handbook of Geophysical Exploration: Seismic Exploration, VolumeAuthor's personal copy C H A P T E R 9 ACQUISITION OF CROSSWELL SEISMIC MONITORING DATA Thomas M 176 References 176 1. INTRODUCTION Seismic velocity (both compressional and shear) is a fundamental

  9. Author's personal copy The behaviors of ferromagnetic nano-particles in and around blood vessels

    E-Print Network [OSTI]

    Rubloff, Gary W.

    Author's personal copy The behaviors of ferromagnetic nano-particles in and around blood vessels Blood vessels Treatment depth Non-dimensional parameters In-vivo experiments a b s t r a c t In magnetic, and the applied magnetic fields. Using physical first-principles and a sophisticated vessel-membrane-tissue (VMT

  10. Author's personal copy Numerical investigation of oil-base mud contamination in condensates: From

    E-Print Network [OSTI]

    Torres-Verdín, Carlos

    Author's personal copy Numerical investigation of oil-base mud contamination in condensates: From Accepted 31 March 2010 Available online 31 May 2010 Keywords: Oil base mud contamination Condensates PVT to completely miscible with the reservoir hydrocarbons, and so OBM contamination causes alteration of fluid

  11. Author's personal copy Evaluation of methods for sorting CCA-treated wood

    E-Print Network [OSTI]

    Florida, University of

    Author's personal copy Evaluation of methods for sorting CCA-treated wood Gary Jacobi a , Helena September 2006 Available online 2 January 2007 Abstract Construction and demolition (C&D) wood frequently contains treated wood including wood treated with chromated copper arsenate (CCA). Many recycling options

  12. Author's personal copy Temporal and spatial trends of total petroleum hydrocarbons in the seawater

    E-Print Network [OSTI]

    Ma, Lena

    (Zhou et al., 2004). Petroleum hydrocarbons as priority organic contaminants are extremely complexAuthor's personal copy Temporal and spatial trends of total petroleum hydrocarbons in the seawater-Environmental Protection Institute, Ministry of Agriculture, Tianjin 300191, China c Soil and Water Science Department

  13. FIX COPY ORNL/Sub/84-00205/1 SEROEDGEY EQVE

    E-Print Network [OSTI]

    Oak Ridge National Laboratory

    FIX COPY ORNL/Sub/84-00205/1 SEROEDGEY EQVE C= Status of Free Piston Stirling Engine Driven Heat STIRLING ENGINE DRIVEN HEAT PUMPS-DEVELOPMENT, ISSUES, AND OPTIONS FINAL REPORT Date Published- April 1986 the results of a program to review the recent experience with free piston Stirling engine (FPSE) driven beat

  14. Author's personal copy Assessment of methods for mapping snow cover from MODIS

    E-Print Network [OSTI]

    Dozier, Jeff

    Author's personal copy Assessment of methods for mapping snow cover from MODIS Karl Rittger: Available online 15 March 2012 Keywords: Snow Remote sensing Mountain hydrology MODIS a b s t r a c t Characterization of snow is critical for understanding Earth's water and energy cycles. Maps of snow from MODIS

  15. Author's personal copy Arsenic-resistant bacteria solubilized arsenic in the growth media

    E-Print Network [OSTI]

    Ma, Lena

    Author's personal copy Arsenic-resistant bacteria solubilized arsenic in the growth media bacteria As solubilization Plant growth promotion a b s t r a c t The role of arsenic-resistant bacteria was associated with arsenic-induced plant P uptake. Arsenic resistant bacteria may have potential to enhance

  16. Author's Copy INTERNATIONAL JOURNAL FOR NUMERICAL AND ANALYTICAL METHODS IN GEOMECHANICS

    E-Print Network [OSTI]

    Valkó, Peter

    Author's Copy #12;INTERNATIONAL JOURNAL FOR NUMERICAL AND ANALYTICAL METHODS IN GEOMECHANICS Int. J. Kronenberg2 1 Petroleum Engineering Department, Texas A & M University, U.S.A. 2 Department of Geology Zhurina in his memory. z E-mail: p-valko@tamu.edu n Correspondence to: P. P. Valk!oo, Petroleum

  17. Author's personal copy Morts d'amour: mitochondria are bacteria that

    E-Print Network [OSTI]

    Author's personal copy Letters Morts d'amour: mitochondria are bacteria that sometimes become as bacteria, as recently explored in this journal [1], and this highly heuristic viewpoint should also the views of mitochondria as either bacteria or organelles and suggests that some bacteria transmuted

  18. Journal of Nanotechnology in Engineering and Medicine Journal Copy of e-mail Notification

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    Mukhopadhyay, Sharmila M.

    Journal of Nanotechnology in Engineering and Medicine Journal Copy of e-mail Notification Journal accepted for publication in the ASME Journal Program. Your page proof is available in PDF format from. If you have any questions, please contact: asme.cenveo@cenveo.com. Sincerely, Sin Yi Yeung, Journal

  19. Journal of Applied Polymer Science Journal Copy of e-mail Notification

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    Journal of Applied Polymer Science Journal Copy of e-mail Notification Journal of Applied Polymer reply e-mail to: APP Journal Team APPproofuser@wiley.com #12;Journal of Applied Polymer Science Journal) WITH ALL CORRESPONDENCE. Thank you. Sincerely, APP Journal Team E-mail: APPproofuser@wiley.com #12

  20. Author's personal copy Modelling and automation of water and wastewater treatment processes

    E-Print Network [OSTI]

    Author's personal copy Preface Modelling and automation of water and wastewater treatment processes on the applications of modelling and automation to water and wastewater treatment processes. The session, under their profession, with automation figuring prominently among the new disciplines required to improve

  1. UNEDITED PREPUBLICATION COPY: FINAL WORDING SUBJECT TO CHANGE i BURNING PLASMA

    E-Print Network [OSTI]

    and Astronomy Division on Engineering and Physical Sciences #12;UNEDITED PREPUBLICATION COPY: FINAL WORDING Academy of Engineering, and the Institute of Medicine. The members of the committee responsible and engineering research, dedicated to the furtherance of science and technology and to their use for the general

  2. Author's personal copy Thermal radiators with embedded pulsating heat pipes: Infra-red thermography

    E-Print Network [OSTI]

    Khandekar, Sameer

    Author's personal copy Thermal radiators with embedded pulsating heat pipes: Infra-red thermography December 2010 Accepted 9 January 2011 Available online 18 January 2011 Keywords: Pulsating heat pipes t With the aim of exploring potential applications of Pulsating Heat Pipes (PHP), for space/terrestrial sectors

  3. Author's personal copy Broadband flow-induced sound control using plasma actuators

    E-Print Network [OSTI]

    Huang, Xun

    by localized arc filament plasma actuators [9], surface impulse discharges [10] and glow discharges [11]; (2Author's personal copy Broadband flow-induced sound control using plasma actuators Xun Huang a Editor: L.G. Tham Available online 9 February 2010 a b s t r a c t Plasma actuators were used

  4. Author's personal copy Effectiveness of domestic wastewater treatment using microbial fuel cells

    E-Print Network [OSTI]

    Author's personal copy Effectiveness of domestic wastewater treatment using microbial fuel cells 2009 Available online 5 September 2009 Keywords: Domestic wastewater treatment Energy recovery Microbial fuel cells (MFCs) Power generation Temperature effect a b s t r a c t Domestic wastewater

  5. Author's personal copy Monte Carlo methods for design and analysis of radiation detectors

    E-Print Network [OSTI]

    Shultis, J. Kenneth

    Author's personal copy Monte Carlo methods for design and analysis of radiation detectors William L Radiation detectors Inverse problems Detector design a b s t r a c t An overview of Monte Carlo as a practical method for designing and analyzing radiation detectors is provided. The emphasis is on detectors

  6. Electronic copy available at: http://ssrn.com/abstract=2188621 United States Patent and Trademark Office

    E-Print Network [OSTI]

    Sekhon, Jasjeet S.

    Electronic copy available at: http://ssrn.com/abstract=2188621 United States Patent and Trademark" (dataset) a new dataset of trademark applications and registrations derived from the U.S. Patent with the agency's responsibility to make patent and trademark information available to the public. The dataset

  7. COPY FROM 2009-2010 UC SAN DIEGO GENERAL CATALOG Engineering: Electrical and Computer Engineering (Curriculum)

    E-Print Network [OSTI]

    Schurgers, Curt

    experiments, as well as to analyze and interpret data 3. A knowledge of electrical engineering safety issues 4 and Computer Engineering (Curriculum) 12. A knowledge of contemporary issues The Undergraduate ProgramsCOPY FROM 2009-2010 UC SAN DIEGO GENERAL CATALOG Engineering: Electrical and Computer Engineering

  8. Author's personal copy Responses of riparian reptile communities to damming and urbanization

    E-Print Network [OSTI]

    Dorcas, Michael E.

    Author's personal copy Responses of riparian reptile communities to damming and urbanization in revised form 24 August 2012 Accepted 27 August 2012 Keywords: Species richness Rivers Damming Reservoirs of two riparian habitat modifications ­ dam- ming and urbanization ­ on overall and species

  9. On Verifying Dynamic Multiple Data Copies over Cloud Servers Ayad F. Barsoum and M. Anwar Hasan

    E-Print Network [OSTI]

    International Association for Cryptologic Research (IACR)

    of scalability, availability, and durability. The more copies the CSP is asked to store, the more fees of large local data storage. The CSP offers paid storage space on its infrastructure to store customers the customers are charged. Therefore, customers need to be strongly convinced that the CSP is storing all data

  10. Author's personal copy Unified nano-mechanics based probabilistic theory of quasibrittle

    E-Print Network [OSTI]

    Bazant, Martin Z.

    Author's personal copy Unified nano-mechanics based probabilistic theory of quasibrittle and brittle structures: I. Strength, static crack growth, lifetime and scaling Jia-Liang Le a,1 , Zdenek P 2011 Keywords: Strength statistics Fracture Probabilistic mechanics Size effect Activation energy a b

  11. Author's personal copy International Journal of Hydrogen Energy 32 (2007) 22732285

    E-Print Network [OSTI]

    Pilon, Laurent

    2007-01-01

    Author's personal copy International Journal of Hydrogen Energy 32 (2007) 2273­2285 www production, or (iii) photochemical reactors. 2007 International Association for Hydrogen Energy. Published as the exhaustion of inexpensive and accessible fossil fuel resources are calling for clean and renewable energy

  12. Author's personal copy International Journal of Hydrogen Energy 32 (2007) 47724785

    E-Print Network [OSTI]

    Pilon, Laurent

    2007-01-01

    Author's personal copy International Journal of Hydrogen Energy 32 (2007) 4772­4785 www radiation from light transfer point of view. 2007 International Association for Hydrogen Energy. Published). 0360-3199/$ - see front matter 2007 International Association for Hydrogen Energy. Published

  13. Author's personal copy Modeling of a passive DMFC operating with neat methanol

    E-Print Network [OSTI]

    Zhao, Tianshou

    Author's personal copy Modeling of a passive DMFC operating with neat methanol W.W. Yang, T.S. Zhao 2011 Keywords: Fuel cells Direct methanol fuel cells Neat methanol Mass transport Model a b s t r a c t A mathematical model is developed to simulate the fundamental transport phenomena in a passive direct methanol

  14. Author's personal copy Neighborhood uniformity increases growth of individual Eucalyptus trees

    E-Print Network [OSTI]

    Anderson, Charles W.

    Author's personal copy Neighborhood uniformity increases growth of individual Eucalyptus trees modeled growth of 8800 focal clonal trees in a 9 ha operational, clonal plantation of Eucalyptus grandis x uniform, operational plantation of clonal Eucalyptus has substantial variance in tree sizes and growth

  15. Author's personal copy Does reverse growth dominance develop in old plantations of Eucalyptus saligna?

    E-Print Network [OSTI]

    Anderson, Charles W.

    Author's personal copy Does reverse growth dominance develop in old plantations of Eucalyptus of stand development in plots of Eucalyptus saligna (Sm.) in Hawaii showed a period of increasing growth plantations of Eucalyptus saligna (Sm.) in Hawaii and Brazil would show a pattern of ``reverse'' growth

  16. Author's personal copy Epigenetic control of Agrobacterium T-DNA integration

    E-Print Network [OSTI]

    Citovsky, Vitaly

    Author's personal copy Review Epigenetic control of Agrobacterium T-DNA integration Shimpei Magori: Agrobacterium T-DNA integration DSB repair Chromatin modification Histone code To genetically transform plants, Agrobacterium transfers its T-DNA into the host cell and integrates it into the plant genome, resulting

  17. Author's personal copy Temporal and spatial trends of total petroleum hydrocarbons in the seawater

    E-Print Network [OSTI]

    Ma, Lena

    Author's personal copy Temporal and spatial trends of total petroleum hydrocarbons in the seawater hydrocarbons Bohai Bay Temporal and spatial trends Seawater a b s t r a c t The temporal and spatial distribution of total petroleum hydrocarbons (TPH) in the seawater of Tianjin Bohai Bay during 1996

  18. RETN: ACCOUNTING: 5 YRS SUBJECT TO CONTRACT AND GRANT REQUIREMENTS OTHER COPIES: 0-5 YRS

    E-Print Network [OSTI]

    RETN: ACCOUNTING: 5 YRS SUBJECT TO CONTRACT AND GRANT REQUIREMENTS OTHER COPIES: 0-5 YRS AUTHORIZED SIGNATURE DATE ForAccountingOffice ReviewandApproval SIGNATURE TITLE DATE CODES (RC) (Enter Reason Code Below). The services were not originally charged to this account

  19. PROCEDURES FOR CHARGING AND COLLECTING FEES FOR PROVIDING COPIES OF PUBLIC INFORMATION UNDER

    E-Print Network [OSTI]

    Glasser, Adrian

    ) Nonstandard-size copy (A)Diskette @ $1.00 each (B) Magnetic tape @ actual cost (C) Data cartridge @ actual cost (D) Tape cartridge @ actual cost (E) Rewritable CD (CD-RW) @ $1.00 each (F) Non-rewritable CD (CD

  20. Author's personal copy Applications and usage of the real-time Neutron Monitor Database q

    E-Print Network [OSTI]

    Usoskin, Ilya G.

    Author's personal copy Applications and usage of the real-time Neutron Monitor Database q H, France f University of Kiel ­ CAU, Olshausenstr. 40, 24098 Kiel, Germany g Institute of Experimental in Astrophysics from Space (E), High-Energy Solar Particle Events ­ Past, Present, Future/Joint Scientific Event

  1. Author's personal copy Prepration and photoluminescence properties of Ce doped lutetium silicate

    E-Print Network [OSTI]

    Cao, Guozhong

    Author's personal copy Prepration and photoluminescence properties of Ce doped lutetium silicate: Received 3 September 2010 Accepted 2 November 2010 Available online 12 November 2010 Keywords: Lutetium silicate Cerium Solegel Photoluminescence Lu2SiO5 a b s t r a c t Cerium doped lutetium silicate powders

  2. Author's personal copy Effects of crossflow velocity and transmembrane pressure on microfiltration

    E-Print Network [OSTI]

    Priezjev, Nikolai V.

    Author's personal copy Effects of crossflow velocity and transmembrane pressure on microfiltration, at the same time, high rejection rate of the oil phase. The effects of transmembrane pressure and crossflow-section are investigated numerically by solving the Navier­Stokes equation. We found that in the absence of crossflow

  3. Author's personal copy On stairwell and elevator shaft pressurization for smoke control

    E-Print Network [OSTI]

    Miller, Richard S.

    Author's personal copy On stairwell and elevator shaft pressurization for smoke control in tall Stairwell pressurization Elevator pressurization a b s t r a c t Elevator shaft and stairwell shaft is found to be completely feasible in the absence of elevator shaft pressurization. In contrast, coupled

  4. Author's personal copy Formation and hydrogen storage properties of in situ

    E-Print Network [OSTI]

    Cao, Guozhong

    Author's personal copy Formation and hydrogen storage properties of in situ prepared Mg­Cu alloy and surface defects. The maximal hydrogen storage contents of Mg­Cu alloy nanoparticles can reach 2.05 Æ 0. Introduction The storage of hydrogen gas is presently accomplished with the stainless steel cylinders under

  5. Author's personal copy Profiling of late Tertiaryearly Quaternary surface in the lower reaches

    E-Print Network [OSTI]

    Rangarajan, Govindan

    Author's personal copy Profiling of late Tertiary­early Quaternary surface in the lower reaches of lower reaches of Narmada valley in a systematic way using the shallow seismic method, that records both horizontal and vertical components of the microtremor (ambient noise) caused by natural processes

  6. Author's personal copy A reactive force-field for Zirconium and Hafnium Di-Boride

    E-Print Network [OSTI]

    Sharma, Pradeep

    Author's personal copy A reactive force-field for Zirconium and Hafnium Di-Boride Afif Gouissem reactions High temperature materials a b s t r a c t Zirconium and Hafnium Di-Boride are the two major. Introduction The aim of this study is to develop transferable reactive force fields for Zirconium and Hafnium

  7. Author's personal copy Journal of Sound and Vibration 311 (2008) 608622

    E-Print Network [OSTI]

    Ray, Asok

    2008-01-01

    with the associated reduction of noise, vibration, and local temperature rise. It also decreases wear of mechanicalAuthor's personal copy JOURNAL OF SOUND AND VIBRATION Journal of Sound and Vibration 311 (2008) 608­622 Anomaly detection in flexible mechanical couplings via symbolic time series analysis Amol Khatkhatea

  8. Author's personal copy Canopy disturbance and tree recruitment over two centuries

    E-Print Network [OSTI]

    Pederson, Neil

    , particularly reconstructing disturbance size, shape, frequency, and severity, is fundamental for developmentAuthor's personal copy Canopy disturbance and tree recruitment over two centuries in a managed 2007 Abstract Disturbance history was reconstructed across an 11300 ha managed longleaf pine (Pinus

  9. Author's personal copy Opportunities and barriers to pumped-hydro energy storage in the United States

    E-Print Network [OSTI]

    Jackson, Robert B.

    Author's personal copy Opportunities and barriers to pumped-hydro energy storage in the United available commercially for grid-tied electricity storage, pumped- hydro energy storage (PHES) and compressed resources, where energy storage becomes more and more important. Pumped-hydro energy storage (PHES

  10. Author's personal copy Reverse engineering mother nature --Shale sedimentology from an

    E-Print Network [OSTI]

    Polly, David

    Author's personal copy Review Reverse engineering mother nature -- Shale sedimentology from of the sedimentology of shales can take a variety of forms. At its simplest one can experiment with suspensions conducted by hydraulic engineers, the transfer of that knowledge to sedimentology is hampered by the fact

  11. Author's personal copy Antioxidant capacity reduced in scallions grown under elevated CO2

    E-Print Network [OSTI]

    Paré, Paul W.

    Author's personal copy Antioxidant capacity reduced in scallions grown under elevated CO2 was used as a model plant to study the impact of a range of CO2 concentrations and light intensities in controlled environmental chambers under a combination of 3 CO2 concentrations of 400, 1200 and 4000 lmol mol

  12. Electronic copy available at: http://ssrn.com/abstract=2227002 Inequality and Innovativeness

    E-Print Network [OSTI]

    become restricted ­ inequality of access lowers rates of innovation and the extent of that declineElectronic copy available at: http://ssrn.com/abstract=2227002 Inequality and Innovativeness Scott that analyze the relationship between inequality of access and rates of innovation as well as correlative data

  13. Author's personal copy Reaction dynamics of the phenyl radical with 1,2-butadiene

    E-Print Network [OSTI]

    Kaiser, Ralf I.

    Author's personal copy Reaction dynamics of the phenyl radical with 1,2-butadiene Xibin Gu t The crossed beams reaction of the phenyl radical (C6H5) with 1,2-butadiene (CH3HCCCH2) was studied under C1 atom of the 1,2-butadiene reactant. The initial reaction intermediate decomposed via atomic hydro

  14. Author's personal copy The sedimentary fluxes of polycyclic aromatic hydrocarbons in the

    E-Print Network [OSTI]

    Zheng, Mei

    Author's personal copy The sedimentary fluxes of polycyclic aromatic hydrocarbons in the Yangtze aromatic hydrocarbons (PAHs) in two 210 Pb dated sediment cores from the coastal East China Sea, strongly flux; Source; Yangtze River Estuary coastal sea 1. Introduction Polycyclic aromatic hydrocarbons (PAHs

  15. Author's personal copy Wave energy resources along the Hawaiian Island chain

    E-Print Network [OSTI]

    Author's personal copy Wave energy resources along the Hawaiian Island chain Justin E. Stopa model Wave atlas Wave energy Wave power a b s t r a c t Hawaii's access to the ocean and remoteness from as nearshore wave energy resources in Hawaii. A global WAVEWATCH III (WW3) model forced by surface winds from

  16. Author's personal copy Fracture mechanics of plate debonding: Validation against experiment

    E-Print Network [OSTI]

    Burgoyne, Chris

    Author's personal copy Fracture mechanics of plate debonding: Validation against experiment M Available online 20 January 2011 Keywords: Fracture energy FRP (fibre reinforced polymers) Energy release is not amenable to finite-element analysis; fracture mechanics, based on a global energy balance, offers a better

  17. Author's personal copy Calibration procedures for a computational model of ductile fracture

    E-Print Network [OSTI]

    Hutchinson, John W.

    Author's personal copy Calibration procedures for a computational model of ductile fracture Z. Xue fracture Computational fracture Shear fracture Damage parameters a b s t r a c t A recent extension of the cup-cone fracture mode in the neck of a round tensile bar. Ductility of a notched round bar provides

  18. Motion at low Reynolds number

    E-Print Network [OSTI]

    Tam, Daniel See Wai, 1980-

    2008-01-01

    The work described in this thesis centers on inertialess motion at low Reynolds numbers at the crossroad between biofluids and microfluids. Here we address questions regarding locomotion of micro-swimmers, transport of ...

  19. Departmental Business Instrument Numbering System

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2005-01-27

    The Order prescribes the procedures for assigning identifying numbers to all Department of Energy (DOE) and National Nuclear Security Administration (NNSA) business instruments. Cancels DOE O 540.1. Canceled by DOE O 540.1B.

  20. Departmental Business Instrument Numbering System

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2000-12-05

    To prescribe procedures for assigning identifying numbers to all Department of Energy (DOE), including the National Nuclear Security Administration, business instruments. Cancels DOE 1331.2B. Canceled by DOE O 540.1A.

  1. MOTOR POOL RESERVATIONS Reservation Number:_______________

    E-Print Network [OSTI]

    Ottino, Julio M.

    of Department Chair or Organization Advisor: ________________________________________ Chart String Number: Fund: ______________________________________________________________________ Name of Department or Organization: _____________________________________________________ Name reservations require the "Organization Authorization for University Vehicles" form to be faxed to Motor Pool

  2. Human KZNF Gene Catalog - A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Huntley, S; Baggott, D. M.; Hamilton, A. T.; Tran-Gyamfi, M.; Yang, S.; Kim, J.; Gordon, L.; Branscomb, E.; Stubbs, L.

    Kruppel-type zinc finger (ZNF) motifs are prevalent components of transcription factor proteins in all eukaryotes. KRAB-ZNF proteins, in which a potent repressor domain is attached to a tandem array of DNA-binding zinc-finger motifs, are specific to tetrapod vertebrates and represent the largest class of ZNF proteins in mammals. To define the full repertoire of human KRAB-ZNF proteins, we searched the genome sequence for key motifs and then constructed and manually curated gene models incorporating those sequences. The resulting gene catalog contains 423 KRAB-ZNF protein-coding loci, yielding alternative transcripts that altogether predict at least 742 structurally distinct proteins. Active rounds of segmental duplication, involving single genes or larger regions and including both tandem and distributed duplication events, have driven the expansion of this mammalian gene family. Comparisons between the human genes and ZNF loci mined from the draft mouse, dog, and chimpanzee genomes not only identified 103 KRAB-ZNF genes that are conserved in mammals but also highlighted a substantial level of lineage-specific change; at least 136 KRAB-ZNF coding genes are primate specific, including many recent duplicates. KRAB-ZNF genes are widely expressed and clustered genes are typically not coregulated, indicating that paralogs have evolved to fill roles in many different biological processes. To facilitate further study, we have developed a Web-based public resource with access to gene models, sequences, and other data, including visualization tools to provide genomic context and interaction with other public data sets. [This abstract was copied from: S Huntley, DM Baggott, AT Hamilton, M Tran-Gyamfi, S Yang, J Kim, L Gordon, E Branscomb, and L Stubbs. 2006. A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors, Genome Research 16(5):669 - 677] The website provides the ability to search the online catalog by genomic coordinates, name, locus type, and motifs, to utilize a graphical browser and to download data files.

  3. Genomic analyses of bacterial porin-cytochrome gene clusters

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Shi, Liang; Fredrickson, James K.; Zachara, John M.

    2014-11-26

    In this study, the porin-cytochrome (Pcc) protein complex is responsible for trans-outer membrane electron transfer during extracellular reduction of Fe(III) by the dissimilatory metal-reducing bacterium Geobacter sulfurreducens PCA. The identified and characterized Pcc complex of G. sulfurreducens PCA consists of a porin-like outer-membrane protein, a periplasmic 8-heme c type cytochrome (c-Cyt) and an outer-membrane 12-heme c-Cyt, and the genes encoding the Pcc proteins are clustered in the same regions of genome (i.e., the pcc gene clusters) of G. sulfurreducens PCA. A survey of additionally microbial genomes has identified the pcc gene clusters in all sequenced Geobacter spp. and other bacteriamore »from six different phyla, including Anaeromyxobacter dehalogenans 2CP-1, A. dehalogenans 2CP-C, Anaeromyxobacter sp. K, Candidatus Kuenenia stuttgartiensis, Denitrovibrio acetiphilus DSM 12809, Desulfurispirillum indicum S5, Desulfurivibrio alkaliphilus AHT2, Desulfurobacterium thermolithotrophum DSM 11699, Desulfuromonas acetoxidans DSM 684, Ignavibacterium album JCM 16511, and Thermovibrio ammonificans HB-1. The numbers of genes in the pcc gene clusters vary, ranging from two to nine. Similar to the metal-reducing (Mtr) gene clusters of other Fe(III)-reducing bacteria, such as Shewanella spp., additional genes that encode putative c-Cyts with predicted cellular localizations at the cytoplasmic membrane, periplasm and outer membrane often associate with the pcc gene clusters. This suggests that the Pcc-associated c-Cyts may be part of the pathways for extracellular electron transfer reactions. The presence of pcc gene clusters in the microorganisms that do not reduce solid-phase Fe(III) and Mn(IV) oxides, such as D. alkaliphilus AHT2 and I. album JCM 16511, also suggests that some of the pcc gene clusters may be involved in extracellular electron transfer reactions with the substrates other than Fe(III) and Mn(IV) oxides.« less

  4. Gene galaxies in the maize genome Virginia Walbot* and Dmitri A. Petrov

    E-Print Network [OSTI]

    Petrov, Dmitri

    Commentary Gene galaxies in the maize genome Virginia Walbot* and Dmitri A. Petrov Department of higher eukary- otic genomes yielded the surprise that despite hundreds of millions of years in gene number, eukaryotic genome size varies over 5 orders of magnitude (4), a paradoxical feature

  5. RESEARCH Open Access Evidence for GC-biased gene conversion as a

    E-Print Network [OSTI]

    Jarvis, Erich D.

    RESEARCH Open Access Evidence for GC-biased gene conversion as a driver of between, consistent with recombination-associated GC biased gene conversion (gBGC) more strongly impacting populations and a greater number of meioses per unit time; that is, a shorter generation time. Thus, in accord

  6. Intrinsic limits to gene regulation by global crosstalk

    E-Print Network [OSTI]

    Friedlander, Tamar; Guet, C?lin C; Barton, Nicholas H; Tka?ik, Gašper

    2015-01-01

    Gene regulation relies on the specificity of transcription factor (TF) - DNA interactions. In equilibrium, limited specificity may lead to crosstalk: a regulatory state in which a gene is either incorrectly activated due to noncognate TF-DNA interactions or remains erroneously inactive. We present a tractable biophysical model of global crosstalk, where many genes are simultaneously regulated by many TFs. We show that in the simplest regulatory scenario, a lower bound on crosstalk severity can be analytically derived solely from the number of (co)regulated genes and a suitable parameter that describes binding site similarity. Estimates show that crosstalk could present a significant challenge for organisms with low-specificity TFs, such as metazoans, unless they use appropriate regulation schemes. Strong cooperativity substantially decreases crosstalk, while joint regulation by activators and repressors, surprisingly, does not; moreover, certain microscopic details about promoter architecture emerge as global...

  7. Kentucky Natural Gas Number of Residential Consumers (Number of Elements)

    Gasoline and Diesel Fuel Update (EIA)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of Natural GasAdjustments (Billion Cubic Feet) Wyoming963Residential Consumers (Number of Elements) Kentucky Natural Gas Number

  8. Transcriptional regulation constrains the organization of genes on eukaryotic chromosomes

    E-Print Network [OSTI]

    Babu, M. Madan

    . In particular, we reveal that the target genes (TGs) of transcription factors (TFs) for the yeast, Saccharo show that (i) the TGs of a majority of TFs show a strong preference to be encoded on specific chromosomes, (ii) the TGs of a significant number of TFs display a strong preference (or avoidance

  9. TRANSPORT NUMBER GRADIENTS AND SOLID ELECTROLYTE DEGRADATION

    E-Print Network [OSTI]

    De Jonghe, Lutgard C.

    2014-01-01

    NUMBER GRADIENTS AND SOLID ELECTROLYTE DEGRADATION LutgardNUMBER GRADIENTS AND SOLID ELECTROLYTE DEGRADATION LutgardNUMBER GRADIENTS AND SOLID ELECTROLYTE DEGRADATION Lutgard

  10. TRANSPORT NUMBER GRADIENTS AND SOLID ELECTROLYTE DEGRADATION

    E-Print Network [OSTI]

    De Jonghe, Lutgard C.

    2012-01-01

    NUMBER GRADIENTS AND SOLID ELECTROLYTE DEGRADATION LutgardNUMBER GRADIENTS AND SOLID ELECTROLYTE DEGRADATION LutgardNUMBER GRADIENTS AND SOLID ELECTROLYTE DEGRADATION Lutgard

  11. Experimental determination of Ramsey numbers

    E-Print Network [OSTI]

    Zhengbing Bian; Fabian Chudak; William G. Macready; Lane Clark; Frank Gaitan

    2013-08-14

    Ramsey theory is a highly active research area in mathematics that studies the emergence of order in large disordered structures. Ramsey numbers mark the threshold at which order first appears and are extremely difficult to calculate due to their explosive rate of growth. Recently, an algorithm that can be implemented using adiabatic quantum evolution has been proposed that calculates the two-color Ramsey numbers $R(m,n)$. Here we present results of an experimental implementation of this algorithm and show that it correctly determines the Ramsey numbers R(3,3) and $R(m,2)$ for $4\\leq m\\leq 8$. The R(8,2) computation used 84 qubits of which 28 were computational qubits. This computation is the largest experimental implementation of a scientifically meaningful adiabatic evolution algorithm that has been done to date.

  12. Bulletin of Tibetology: Volume 32 Number 3 Number 3 : Full issue

    E-Print Network [OSTI]

    Namgyal Institute of Tibetology

    as caners of woodbiocks. copied official reports and files and I,cpt the diary of the Dalai Lallla. However we don'! kllow if tlley were also employed to carve the woodblocks for the Ilrst banknote series. 2b. Harrer. Heinrich: Siebell l

  13. Human AZU-1 gene, variants thereof and expressed gene products

    DOE Patents [OSTI]

    Chen, Huei-Mei; Bissell, Mina

    2004-06-22

    A human AZU-1 gene, mutants, variants and fragments thereof. Protein products encoded by the AZU-1 gene and homologs encoded by the variants of AZU-1 gene acting as tumor suppressors or markers of malignancy progression and tumorigenicity reversion. Identification, isolation and characterization of AZU-1 and AZU-2 genes localized to a tumor suppressive locus at chromosome 10q26, highly expressed in nonmalignant and premalignant cells derived from a human breast tumor progression model. A recombinant full length protein sequences encoded by the AZU-1 gene and nucleotide sequences of AZU-1 and AZU-2 genes and variant and fragments thereof. Monoclonal or polyclonal antibodies specific to AZU-1, AZU-2 encoded protein and to AZU-1, or AZU-2 encoded protein homologs.

  14. phenotype -morphological, physiological, biochemical or behavioral characteristics, resulting from a variety of sources

    E-Print Network [OSTI]

    Houde, Peter

    frequency - the proportion of a population with a certain genotype, e.g., 25% A1A1 50% A1A2 25% A2A2 allele frequency - the proportion of gene copies in a population with a certain allele (remember that there are 2 number of gene copies of all alleles #12;Sources of Phenotypic Variation Genotype Environment maternal

  15. Constrained Ramsey Numbers of Graphs

    E-Print Network [OSTI]

    Jiang, Tao

    Constrained Ramsey Numbers of Graphs Robert E. Jamison,1 Tao Jiang,2* and Alan C. H. Ling3 1-like trees. � 2002 Wiley Periodicals, Inc. J Graph Theory 42: 1­16, 2003 Keywords: Ramsey; monochromatic edges have the same color and rainbow iff all of its edges have different colors. In classical Ramsey

  16. Swimming by numbers QUANTUM CONTROL

    E-Print Network [OSTI]

    Mahadevan, L.

    flow, providing key qualitative insight in fluid mechanics. For example, the so-called Reynolds number be described by a universal mechanical principle seems optimistic -- if not entirely unrealistic. Now, however and pressure forces relevant for net propulsion. A measure of the thrust force is given by the mass

  17. After the copy : creativity, originality and the labor of appropriation : Dafen Village, Shenzhen, China (1989-2010)

    E-Print Network [OSTI]

    Wong, Winnie Won Yin, 1978-

    2010-01-01

    Since 1989, Dafen village in Shenzhen, China, has supplied millions of hand-painted oil-on-canvas paintings each year to global consumer markets. Accused of copying Western masterpieces, and spurred by the Chinese party-state's ...

  18. Cytochrome b5 gene and protein of Candida tropicalis and methods relating thereto

    DOE Patents [OSTI]

    Craft, David L. (Fort Thomas, KY); Madduri, Krishna M. (Westfield, IN); Loper, John C. (Cincinnati, OH)

    2003-01-01

    A novel gene has been isolated which encodes cytochrome b5 (CYTb5) protein of the .omega.-hydroxylase complex of C. tropicalis 20336. Vectors including this gene, and transformed host cells are provided. Methods of increasing the production of a CYTb5 protein are also provided which involve transforming a host cell with a gene encoding this protein and culturing the cells. Methods of increasing the production of a dicarboxylic acid are also provided which involve increasing in the host cell the number of genes encoding this protein.

  19. RTM1: A member of a new family of telomeric repeated genes in yeast

    SciTech Connect (OSTI)

    Ness, F.; Aigle, M. [Laboratoire de Genetique, Talence (France)

    1995-07-01

    We have isolated a new yeast gene called RTM1 whose overexpression confers resistance to the toxicity of molasses. The RTM1 gene encodes a hydrophobic 34-kD protein that contains seven potential transmembrane-spanning segments. Analysis of a series of industrial strains shows that the sequence is present in multiple copies and in variable locations in the genome. RTM loci are always physically associated with SUC telomeric loci. The SUC-RTM sequences are located between X and Y{prime} subtelomeric sequences at chromosome ends. Surprisingly RTM sequences are not detected in the laboratory strain X2180. The lack of this sequence is associated with the absence of any SUC telomeric gene previously described. This observation raises the question of the origin of this nonessential gene. The particular subtelomeric position might explain the SUC-RTM sequence amplification observed in the genome of yeasts used in industrial biomass or ethanol production with molasses as substrate. This SUC-RTM sequence dispersion seems to be a good example of genomic rearrangement playing a role in evolution and environmental adaptation in these industrial yeasts. 53 refs., 7 figs., 5 tabs.

  20. Coulomb gauge Green functions and Gribov copies in SU(2) lattice gauge theory

    E-Print Network [OSTI]

    M. Quandt; G. Burgio; S. Chimchinda; H. Reinhardt

    2007-10-02

    We reconsider the lattice measurement of Green functions in Coulomb gauge, both in 2+1 and 3+1 dimensions, using an improved gauge fixing scheme. The influence of Gribov copies is examined and we find clear indications that Green functions are more strongly affected than previously assumed, in particular for low momenta. Qualitatively, our improved lattice results in the infra-red compare more favourably with recent continuum calculations in the Hamiltonian approach.

  1. Louisiana Natural Gas Number of Residential Consumers (Number of Elements)

    Gasoline and Diesel Fuel Update (EIA)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of Natural GasAdjustments (Billion Cubic Feet) Wyoming963Residential Consumers (Number of33Cubic Foot)Year Jan

  2. California Natural Gas Number of Residential Consumers (Number of Elements)

    Gasoline and Diesel Fuel Update (EIA)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of Natural GasAdjustments (Billion Cubic Feet) Wyoming963 1.969 1.979Coal4 ArizonaResidential Consumers (Number of Elements)

  3. Nebraska Natural Gas Number of Industrial Consumers (Number of Elements)

    U.S. Energy Information Administration (EIA) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home PageMonthly","10/2015"4,"Ames5 Tables July 1996 Energy Information Administration Office of Coal, Nuclear,Decade Year-03.823,172 3,009165,360Industrial Consumers (Number of

  4. Nebraska Natural Gas Number of Residential Consumers (Number of Elements)

    U.S. Energy Information Administration (EIA) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home PageMonthly","10/2015"4,"Ames5 Tables July 1996 Energy Information Administration Office of Coal, Nuclear,Decade Year-03.823,172 3,009165,360Industrial Consumers (Number

  5. North Dakota Natural Gas Number of Industrial Consumers (Number of

    U.S. Energy Information Administration (EIA) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home PageMonthly","10/2015"4,"Ames5 Tables July 1996 Energy Information Administration Office of Coal, Nuclear,DecadeYear Jan FebElements) Industrial Consumers (Number of

  6. North Dakota Natural Gas Number of Residential Consumers (Number of

    U.S. Energy Information Administration (EIA) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home PageMonthly","10/2015"4,"Ames5 Tables July 1996 Energy Information Administration Office of Coal, Nuclear,DecadeYear Jan FebElements) Industrial Consumers (Number

  7. Visa Mastercard Bill me Exp. date Security number

    E-Print Network [OSTI]

    Goodrich, James

    Fax. Quantity Title ISBN Cost Total Add carriage per copy: UK £5; Europe £8; USA $5.50; Rest of World Expression A Hidden Layer of Complexity available now! Chapter 1: The Hammerhead Ribozyme Revisited: New, and bluetongue virus, entry

  8. The Fermat and Mersenne Numbers 

    E-Print Network [OSTI]

    Nowlin, W. D.

    1960-01-01

    . (Throughout this thesis, F will always denote a Feraat nmaber and M a Mersenne nuuber. ) The problea of deternining p which of the Fernat and Mersenne nmabers are prius has concerned uany matheuaticians during the last two centuries. This research has... or a Fermat, number. Next? Froth~a theorem, of which Pepin's test is a special case, is stated and proved. In the last section the theory of recurring series is used to establish primality tests of the Lucas type for both the Fermat and Mersenne...

  9. Method of controlling gene expression

    DOE Patents [OSTI]

    Peters, Norman K. (Berkeley, CA); Frost, John W. (Menlo Park, CA); Long, Sharon R. (Palo Alto, CA)

    1991-12-03

    A method of controlling expression of a DNA segment under the control of a nod gene promoter which comprises administering to a host containing a nod gene promoter an amount sufficient to control expression of the DNA segment of a compound of the formula: ##STR1## in which each R is independently H or OH, is described.

  10. GenePRIMP: A GENE PRediction IMprovement Pipeline for Prokaryotic genomes

    SciTech Connect (OSTI)

    Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia; Ovchinnikova, Galina; Hooper, Sean D.; Lykidis, Athanasios; Kyrpides, Nikos C.

    2010-04-01

    We present 'gene prediction improvement pipeline' (GenePRIMP; http://geneprimp.jgi-psf.org/), a computational process that performs evidence-based evaluation of gene models in prokaryotic genomes and reports anomalies including inconsistent start sites, missed genes and split genes. We found that manual curation of gene models using the anomaly reports generated by GenePRIMP improved their quality, and demonstrate the applicability of GenePRIMP in improving finishing quality and comparing different genome-sequencing and annotation technologies.

  11. DRAFT CRUISE REPORT Cruise Number: DY0807

    E-Print Network [OSTI]

    Neuston (Neu) 68 Deployment of satellite buoy (SatBuoy) 3 Samples Collected Tows Number Number of larvae of buoy or mooring (Deploy) 3 3 Stimulated fluorescence collected during CTD casts (Fluor) 18 Number

  12. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Gordon, Gary

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most, including his fondness for creating mathematically precise large oil paintings (according to

  13. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Lucia, Angelo

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most enhanced oil recovery (EOR), permafrost basins, and other reservoirs. Reservoir simulation models

  14. Gene-environment interactions in genetic epidemiology 

    E-Print Network [OSTI]

    Spinka, Christine Marie

    2005-02-17

    Gene-environment interactions are an area of increasing interest in complex hu- man diseases. The first step in any study of the interactions between genes and the environment involves identifying genes which influence ...

  15. volume 17 Number 12 1989 Nucleic Acids Research The 5S RNA gene minichromosome of Euplotes

    E-Print Network [OSTI]

    Olins, Ada L.

    extract and 1.33 g/L anhydrous sodium acetate. Algae were harvested and resuspended in Pringsheim solution boiled wheat seeds in Carolina Spring-water. Large-scale cultures of Euplotes were grown in trays

  16. Different Immune Response of Mice Immunized with Conjugates Containing Multiple Copies of Either Consensus or Mixotope

    E-Print Network [OSTI]

    Pompeu Fabra, Universitat

    -08028 Barcelona, Spain, Centro de Ingenieri´a Gene´tica y Biotecnologi´a, Apdo 6162, Cubanaca´n, Habana

  17. Ramsey numbers of sparse hypergraphs David Conlon

    E-Print Network [OSTI]

    Fox, Jacob

    Ramsey numbers of sparse hypergraphs David Conlon Jacob Fox Benny Sudakov Abstract We give a short proof that any k-uniform hypergraph H on n vertices with bounded degree has Ramsey number at most c(, k on the Ramsey number of hypergraphs with at most m edges. 1 Introduction For a graph H, the Ramsey number r

  18. MFR Paper 1351. From Marine Fisheries Review. Vol, 40, No. 10, October 1978, Copies of this paper, in limited numbers, are available from 0822, User

    E-Print Network [OSTI]

    exposed to waste motor oil. Proc, Conf. Prevo Control Oil Poilu!.. March 25-27. 1975. San Franc. U mill waste (Gardner, 1975; U.S. Environmental Protection Agency, 1972). Atlantic salmon olfactory senses were impaired by severe cellular dam- age following exposure to a range of pulp mill waste

  19. The Control of Copy Number of IS6110 in Mycobacterium tuberculosis Mark M. Tanaka,* Noah A. Rosenberg, and Peter M. Small

    E-Print Network [OSTI]

    Rosenberg, Noah

    Wales, Australia; Molecular & Computational Biology, University of Southern California, Los Angeles the Akaike Information Criterion for each model to identify the models that best explain data consisting expressed through a single-base frameshift during trans

  20. Detection and correction of artefacts in estimation of rare copy number variants and analysis of rare deletions in type 1 diabetes

    E-Print Network [OSTI]

    Cooper, Nicholas J.; Shtir, Corina J.; Smyth, Deborah J.; Guo, Hui; Swafford, Austin D.; Zanda, Manuela; Hurles, Matthew E.; Walker, Neil M.; Plagnol, Vincent; Cooper, Jason D.; Howson, Joanna M. M.; Burren, Oliver S.; Onengut-Gumuscu, Suna; Rich, Stephen S.; Todd, John A.

    2014-11-25

    ). These included psoriasis,N = 1075 (35); systemic lupus erythema- tosus, N = 1241 (36); Crohn’s disease, N = 744 (37); Addison’s dis- ease, N = 705 (38); paediatric multiple sclerosis, N = 90 (39) and T1D, N = 60 (40), where in each instance, ‘N’ was the total... diseases based on available GWAS data (rheumatoid arthritis, ankylosing spon- dylitis, systemic lupus erythematosus, T1D, autoimmune thyroid disease, coeliac disease, multiple sclerosis, ulcerative colitis, Crohn’s disease, psoriasis, juvenile idiopathic...

  1. FO:EFC/2006/2.3 For reasons of economy, this document is produced in a limited number of copies. Delegates and observers are kindly requested to

    E-Print Network [OSTI]

    for products that cannot be validated as legally sourced. 4. The G8 Forestry Action Programme, agreed by G8 for its presidency of the G8, and the topic was discussed at the meeting of G8 environment and development

  2. Department for Analysis and Computational Number Theory Additive functions and number systems

    E-Print Network [OSTI]

    Department for Analysis and Computational Number Theory Additive functions and number systems systems April 7, 2010 1 / 35 #12;Department for Analysis and Computational Number Theory Outline Number and Computational Number Theory Number systems Let R be an integral domain, b R, and N = {n1, . . . , nm} R

  3. Nonviral Vectors for Gene Delivery

    E-Print Network [OSTI]

    Baoum, Abdulgader Ahmed

    2011-04-26

    , two nonviral gene delivery systems using either biodegradable poly(D,L-lactide-co-glycolide) (PLG) nanoparticles or cell penetrating peptide (CPP) complexes have been designed and studied using A549 human lung epithelial cells. PLG nanoparticles were...

  4. Fusion genes in breast cancer

    E-Print Network [OSTI]

    Batty, Elizabeth

    2012-02-07

    Fusion genes in breast cancer Elizabeth M. Batty Clare College, University of Cambridge A dissertation submitted to the University of Cambridge in candidature for the degree of Doctor of Philosophy November 2010 ii... is the outcome of work done in collaboration except where specifically indicated in the text. It has not been submitted whole or in part for any other qualification at any other University. iii Summary Fusion genes in breast cancer Elizabeth Batty...

  5. What's in an ad? Print ads generally have four written parts --headline, support copy, call to action, and company name --plus a strong

    E-Print Network [OSTI]

    Buehrer, R. Michael

    What's in an ad? Print ads generally have four written parts -- headline, support copy, call. Strategy and copy · The most important step is to set a single objective for the ad. Are you featuring to get the attention of your reader. Your ad's headline is often the only part of an ad that is read

  6. This article was published in an Elsevier journal. The attached copy is furnished to the author for non-commercial research and

    E-Print Network [OSTI]

    Rolán-Alvarez, Emilio

    and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites://www.elsevier.com/copyright #12;Author's personal copy Research Report Genetic impact of the Prestige oil spill in wild of the Prestige cargo ship produced an oil spill of 60,000 tons that affected many areas along the Gali- cian

  7. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Chung, Deborah D.L.

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most's personal copy Research Paper Coagulation of oil in water using sawdust, bentonite and calcium hydroxide Accepted 17 May 2011 Available online 11 June 2011 Keywords: Oil Water Coagulation Bentonite Sawdust

  8. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Guerra, Vasco

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most) to their personal website or institutional repository. Authors requiring further information regarding Elsevier's personal copy A multiquantum dataset for vibrational excitation and dissociation in high-temperature O2­O2

  9. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    De Sterck, Hans

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most) to their personal website or institutional repository. Authors requiring further information regarding Elsevier's personal copy Journal of Computational and Applied Mathematics 223 (2009) 916­928 Contents lists available

  10. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Flach, Sergej

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most) to their personal website or institutional repository. Authors requiring further information regarding Elsevier's personal copy Physica D 256­257 (2013) 1­6 Contents lists available at SciVerse ScienceDirect Physica D

  11. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Hudson, Stuart

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most) to their personal website or institutional repository. Authors requiring further information regarding Elsevier's personal copy Physics Letters A 373 (2009) 4409­4415 Contents lists available at ScienceDirect Physics

  12. On-chip real-time single-copy polymerase chain reaction in picoliter droplets

    SciTech Connect (OSTI)

    Beer, N R; Hindson, B; Wheeler, E; Hall, S B; Rose, K A; Kennedy, I; Colston, B

    2007-04-20

    The first lab-on-chip system for picoliter droplet generation and PCR amplification with real-time fluorescence detection has performed PCR in isolated droplets at volumes 10{sup 6} smaller than commercial real-time PCR systems. The system utilized a shearing T-junction in a silicon device to generate a stream of monodisperse picoliter droplets that were isolated from the microfluidic channel walls and each other by the oil phase carrier. An off-chip valving system stopped the droplets on-chip, allowing them to be thermal cycled through the PCR protocol without droplet motion. With this system a 10-pL droplet, encapsulating less than one copy of viral genomic DNA through Poisson statistics, showed real-time PCR amplification curves with a cycle threshold of {approx}18, twenty cycles earlier than commercial instruments. This combination of the established real-time PCR assay with digital microfluidics is ideal for isolating single-copy nucleic acids in a complex environment.

  13. Characterization of a unique embedded gene 

    E-Print Network [OSTI]

    Zhang, Ning

    1999-01-01

    The lysis gene region of bacteriophage [] consists of a cluster of three gene: S, R, and Rz. While the S and R genes are essential for [] lysis under all conditions, the Rz gene is required for [] lysis only under certain conditions. Transposon...

  14. Pluripotency, differentiation, and reprogramming: A gene expression dynamics model with epigenetic feedback regulation

    E-Print Network [OSTI]

    Miyamoto, Tadashi; Kaneko, Kunihiko

    2015-01-01

    Characterization of pluripotent states, in which cells can both self-renew and differentiate, and the irreversible loss of pluripotency are important research areas in developmental biology. In particular, an understanding of these processes is essential to the reprogramming of cells for biomedical applications, i.e., the experimental recovery of pluripotency in differentiated cells. Based on recent advances in dynamical-systems theory for gene expression, we propose a gene-regulatory-network model consisting of several pluripotent and differentiation genes. Our results show that cellular-state transition to differentiated cell types occurs as the number of cells increases, beginning with the pluripotent state and oscillatory expression of pluripotent genes. Cell-cell signaling mediates the differentiation process with robustness to noise, while epigenetic modifications affecting gene expression dynamics fix the cellular state. These modifications ensure the cellular state to be protected against external per...

  15. Working Copy

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    are distributed to affected underground repository operations, engineering, and safety managers. 3.1.2 Geosciences Monitoring Program Geosciences document existing geologic...

  16. Working Copy

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservationBio-Inspired SolarAbout /Two0Photos andSeminarsDesignIn the News Oswego teenAt

  17. Working Copy

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservationBio-Inspired SolarAbout /Two0Photos andSeminarsDesignIn the News Oswego

  18. Prime number generation and factor elimination

    E-Print Network [OSTI]

    Vineet Kumar

    2014-10-06

    We have presented a multivariate polynomial function termed as factor elimination function,by which, we can generate prime numbers. This function's mapping behavior can explain the irregularities in the occurrence of prime numbers on the number line. Generally the different categories of prime numbers found till date, satisfy the form of this function. We present some absolute and probabilistic conditions for the primality of the number generated by this method. This function is capable of leading to highly efficient algorithms for generating prime numbers.

  19. Spatial regulation of a common precursor from two distinct genes generates metabolite diversity

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Guo, Chun -Jun; Sun, Wei -Wen; Bruno, Kenneth S.; Oakley, Berl R.; Keller, Nancy P.; Wang, Clay C. C.

    2015-07-13

    In secondary metabolite biosynthesis, core synthetic genes such as polyketide synthase genes usually encode proteins that generate various backbone precursors. These precursors are modified by other tailoring enzymes to yield a large variety of different secondary metabolites. The number of core synthesis genes in a given species correlates, therefore, with the number of types of secondary metabolites the organism can produce. In our study, heterologous expression of all the A. terreus NRPSlike genes showed that two NRPS-like proteins, encoded by atmelA and apvA, release the same natural product, aspulvinone E. In hyphae this compound is converted to aspulvinones whereas inmore »conidia it is converted to melanin. The genes are expressed in different tissues and this spatial control is probably regulated by their own specific promoters. Comparative genomics indicates that atmelA and apvA might share a same ancestral gene and the gene apvA is located in a highly conserved region in Aspergillus species that contains genes coding for life-essential proteins. Our data reveal the first case in secondary metabolite biosynthesis in which the tissue specific production of a single compound directs it into two separate pathways, producing distinct compounds with different functions. Our data also reveal that a single trans-prenyltransferase, AbpB, prenylates two substrates, aspulvinones and butyrolactones, revealing that genes outside of contiguous secondary metabolism gene clusters can modify more than one compound thereby expanding metabolite diversity. Our study raises the possibility of incorporation of spatial, cell-type specificity in expression of secondary metabolites of biological interest and provides new insight into designing and reconstituting their biosynthetic pathways.« less

  20. Turing's normal numbers: towards randomness Veronica Becher

    E-Print Network [OSTI]

    presumably in 1938 Alan Turing gave an algorithm that produces real numbers normal to every integer base- putable normal numbers, and this result should be attributed to Alan Turing. His manuscript entitled "A

  1. Small Ramsey Numbers Stanislaw P. Radziszowski

    E-Print Network [OSTI]

    Radziszowski, Stanislaw P.

    Small Ramsey Numbers Stanislaw P. Radziszowski Department of Computer Science Rochester Institute Ramsey numbers, where the avoided graphs are complete or complete without one edge. Many results per behavior of Ramsey numbers, but rather we concentrate on their specific values. Mathematical Reviews

  2. Ramsey Numbers Involving Cycles Stanislaw P. Radziszowski

    E-Print Network [OSTI]

    Radziszowski, Stanislaw P.

    Ramsey Numbers Involving Cycles Stanislaw P. Radziszowski Department of Computer Science Rochester and data on Ramsey numbers involving cycles. This survey is based on the author's 2009 revi- sion #12 of the Dynamic Survey DS1, "Small Ramsey Numbers", at the Electronic Journal of Combinatorics. Table of Contents

  3. SHARP THRESHOLDS FOR HYPERGRAPH REGRESSIVE RAMSEY NUMBERS

    E-Print Network [OSTI]

    Lee, Gyesik

    SHARP THRESHOLDS FOR HYPERGRAPH REGRESSIVE RAMSEY NUMBERS LORENZO CARLUCCI, GYESIK LEE, AND ANDREAS WEIERMANN Abstract. The f-regressive Ramsey number Rreg f (d, n) is the minimum N such that every colouring regressive Ramsey numbers as defined by Kanamori and McAloon. In this paper we classifiy the growth

  4. Motivation Examples Star Avoiding Ramsey Numbers

    E-Print Network [OSTI]

    Isaak, Garth

    Motivation Examples Star Avoiding Ramsey Numbers Jonelle Hook, Garth Isaak Department and Cryptography Jonelle Hook, Garth Isaak Star Avoiding Ramsey Numbers #12;Motivation Examples Graph Ramsey-coloring of K13 has a red C5 or a blue K4. Jonelle Hook, Garth Isaak Star Avoiding Ramsey Numbers #12

  5. Diagonal Ramsey Numbers in Multipartite Graphs

    E-Print Network [OSTI]

    van Vuuren, Jan H.

    Diagonal Ramsey Numbers in Multipartite Graphs AP Burger , PJP Grobler , EH Stipp & JH van Vuuren September 17, 2003 Abstract The notion of a graph theoretic Ramsey number is generalised by assuming definition. Some small multipartite Ramsey numbers are found, while upper and lower bounds are established

  6. Diagonal Ramsey Numbers in Multipartite Graphs

    E-Print Network [OSTI]

    van Vuuren, Jan H.

    Diagonal Ramsey Numbers in Multipartite Graphs AP Burger + , PJP Grobler # , EH Stipp # & JH van Vuuren # September 17, 2003 Abstract The notion of a graph theoretic Ramsey number is generalised as in the classical definition. Some small multipartite Ramsey numbers are found, while upper and lower bounds

  7. Number of peer-reviewed publications

    E-Print Network [OSTI]

    ·Number of peer- reviewed publications produced per year ·Data accurate as of 02 April 2012 · Number of publications produced per institution (top 10) ·Collaborations counted multiple times · Non-cumulative number of citations received by OER publications per year ·Data accurate as of 02 April 2012 · The work

  8. Company number 5857955 Wellcome Trust Finance plc

    E-Print Network [OSTI]

    Rambaut, Andrew

    Company number 5857955 Wellcome Trust Finance plc Annual Report and Financial Statements Year ended 30 September 2014 #12;Company number 5857955 Wellcome Trust Finance plc Contents Page Strategic number 58579551 Wellcome Trust Finance plc Strategic Report For the year ended 30 September 2014

  9. KIAS SEOUL, February 2004 Transcendental Number Theory

    E-Print Network [OSTI]

    Waldschmidt, Michel

    ) ­ Introductio in Analysin Infinitorum. Suggests the transcendence of log 1/ log 2 when this number is irrational in Analysin Infinitorum. Suggests the transcendence of log 1/ log 2 when this number is irrational (for this number is irrational (for algebraic 1 and 2). http://www.math.jussieu.fr/miw/ 14 #12;Euler (1748

  10. Number Theory I: Tools and Diophantine Equations

    E-Print Network [OSTI]

    Cohen, Henri

    covered by two other books of the author [Coh0] and [Coh1]. The central (although not unique) theme in integers, rational numbers, or more generally in algebraic numbers. This theme is in particular the central of the reader that he or she is familiar with the standard basic theory of number fields, up to and including

  11. Clar number of catacondensed benzenoid hydrocarbons

    E-Print Network [OSTI]

    Klavzar, Sandi

    Clar number of catacondensed benzenoid hydrocarbons Sandi KlavŸzar a,# , Petra Ÿ Zigert a , Ivan hydrocarbon: CL is equal to the minimum number of straight lines required to intersect all hexagons theory; Clar formula; Clar number; Resonance graph; Benzenoid hydrocarbons 1. Introduction Within

  12. Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks

    SciTech Connect (OSTI)

    Makarova, Kira S.; Omelchenko, Marina V.; Gaidamakova, Elena K.; Matrosova, Vera Y.; Vasilenko, Alexander; Zhai, Min; Lapidus, Alla; Copeland, Alex; Kim, Edwin; Land, Miriam; Mavrommatis, Konstantinos; Pitluck, Samuel; Richardson, Paul M.; Detter, Chris; Brettin, Thomas; Saunders, Elizabeth; Lai, Barry; Ravel, Bruce; Kemner, Kenneth M.; Wolf, Yuri I.; Sorokin, Alexander; Gerasimova, Anna V.; Gelfand, Mikhail S.; Fredrickson, James K.; Koonin, Eugene V.; Daly, Michael J.

    2007-07-24

    Bacteria of the genus Deinococcus are extremely resistant to ionizing radiation (IR), ultraviolet light (UV) and desiccation. The mesophile Deinococcus radiodurans was the first member of this group whose genome was completely sequenced. Analysis of the genome sequence of D. radiodurans, however, failed to identify unique DNA repair systems. To further delineate the genes underlying the resistance phenotypes, we report the whole-genome sequence of a second Deinococcus species, the thermophile Deinococcus geothermalis, which at itsoptimal growth temperature is as resistant to IR, UV and desiccation as D. radiodurans, and a comparative analysis of the two Deinococcus genomes. Many D. radiodurans genes previously implicated in resistance, but for which no sensitive phenotype was observed upon disruption, are absent in D. geothermalis. In contrast, most D. radiodurans genes whose mutants displayed a radiation-sensitive phenotype in D. radiodurans are conserved in D. geothermalis. Supporting the existence of a Deinococcus radiation response regulon, a common palindromic DNA motif was identified in a conserved set of genes associated with resistance, and a dedicated transcriptional regulator was predicted. We present the case that these two species evolved essentially the same diverse set of gene families, and that the extreme stress-resistance phenotypes of the Deinococcus lineage emerged progressively by amassing cell-cleaning systems from different sources, but not by acquisition of novel DNA repair systems. Our reconstruction of the genomic evolution of the Deinococcus-Thermus phylum indicates that the corresponding set of enzymes proliferated mainly in the common ancestor of Deinococcus. Results of the comparative analysis weaken the arguments for a role of higher-order chromosome alignment structures in resistance; more clearly define and substantially revise downward the number of uncharacterized genes that might participate in DNA repair and contribute to resistance; and strengthen the case for a role in survival of systems involved in manganese and iron homeostasis.

  13. Electronic copy available at: http://ssrn.com/abstract=1594813 A NEW PERSPECTIVE ON THE GENEALOGY OF

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Electronic copy available at: http://ssrn.com/abstract=1594813 A NEW PERSPECTIVE ON THE GENEALOGY@iae-grenoble.fr Abstract: This article puts forwards a "reorientationist" perspective about the genealogy of collective (mainly medievalist) can be helpful in writing a different genealogy of contemporary models of collective

  14. Electronic copy available at: http://ssrn.com/abstract=1558744 The optimal portfolio of emissions abatement and

    E-Print Network [OSTI]

    Kammen, Daniel M.

    Electronic copy available at: http://ssrn.com/abstract=1558744 The optimal portfolio of emissions abatement and low-carbon R&D depends on the expected availability of negative emission technologies Derek M optimal portfolio of emissions abatement and low-carbon R&D depends on the expected availability

  15. Journals Distributed by the University of Chicago Press 2012 Subscription Rates --All rates are for print copies unless otherwise noted--

    E-Print Network [OSTI]

    Mateo, Jill M.

    Journals Distributed by the University of Chicago Press 2012 Subscription Rates --All rates are for print copies unless otherwise noted-- For Northwestern University Press Journal Title ISSN Volume Freq-only) $125 (e-only) Online-only title Inagural issue OA, all future issues restricted access. Journal

  16. Author's personal copy Long-time evolution of models of aeolian sand dune elds: In uence of dune

    E-Print Network [OSTI]

    Byrne, Shane

    Author's personal copy Long-time evolution of models of aeolian sand dune elds: In uence of dune December 2008 Accepted 6 February 2009 Available online 20 February 2009 Keywords: Sand dune Dune eld Dune eld model Dune collision Coarsening Coalescence Theoretical models which approximate individual sand

  17. Kingston Frontenac Public Library's Online Database Collection Copied from the A-to-Z Database List; Updated July 14, 2014

    E-Print Network [OSTI]

    Fletcher, Robin

    a wealth of reference, periodicals, primary sources, and multimedia resources. Includes Canadian curriculum1 Kingston Frontenac Public Library's Online Database Collection Copied from the A-to-Z Database for more than 180 international, and often peer-reviewed, journals and reports Ancestry Library Edition

  18. Search #2015347 AD COPY-AHS WEBSITE Final 3-27-15 Administrative Services Specialist II (UCPEA IV)

    E-Print Network [OSTI]

    Alpay, S. Pamir

    department committee work and support outcomes data base management; May represent the department to other and coordination of complex filing systems, records and/or data systems both hard copy and electronic (i) requiring the understanding and evaluation of data sources; May train, supervise and establish work

  19. 7/11/00-draft copy: do not quote 1 of 30 New Technologies for Residential HVAC Ducts

    E-Print Network [OSTI]

    7/11/00-draft copy: do not quote 1 of 30 New Technologies for Residential HVAC Ducts Burke Treidler, and are difficult to install in a manner which will insure no leaks. This report summarizes the potential for new technologies for ducts, duct fittings, and insulation. It begins with a review of what technology is currently

  20. Electronic copy available at: http://ssrn.com/abstract=1558744 The Role of Abatement, Technology Policies, and

    E-Print Network [OSTI]

    Kammen, Daniel M.

    role of abatement, technology policies, and negative emission strategies in achieving climate goalsElectronic copy available at: http://ssrn.com/abstract=1558744 The Role of Abatement, Technology Policies, and Negative Emission Strategies in Achieving Climate Goals Derek M. Lemoine*, Sabine Fuss, Jana

  1. Gene encoding plant asparagine synthetase

    DOE Patents [OSTI]

    Coruzzi, Gloria M. (New York, NY); Tsai, Fong-Ying (New York, NY)

    1993-10-26

    The identification and cloning of the gene(s) for plant asparagine synthetase (AS), an important enzyme involved in the formation of asparagine, a major nitrogen transport compound of higher plants is described. Expression vectors constructed with the AS coding sequence may be utilized to produce plant AS; to engineer herbicide resistant plants, salt/drought tolerant plants or pathogen resistant plants; as a dominant selectable marker; or to select for novel herbicides or compounds useful as agents that synchronize plant cells in culture. The promoter for plant AS, which directs high levels of gene expression and is induced in an organ specific manner and by darkness, is also described. The AS promoter may be used to direct the expression of heterologous coding sequences in appropriate hosts.

  2. Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes

    E-Print Network [OSTI]

    Jordan, King

    Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA Jordan, Igor B. Rogozin, Yuri I. Wolf, and Eugene V. Koonin1 National Center for Biotechnology functionally dispensable and/or redundant than are nonessential genes. Given the role of pu- rifying selection

  3. Tip sheet: Expanded Library of Congress Call Number Classification system Call Number Subject Matter

    E-Print Network [OSTI]

    Kambhampati, Patanjali

    Tip sheet: Expanded Library of Congress Call Number Classification system Call Number Subject R: Medicine T: Technology U: Military Science Z: Bibliography. Library Science. Information

  4. Texas Rice, Volume VI, Number

    E-Print Network [OSTI]

    2006-01-01

    of scientists from Vietnam’s Insti- tute of Tropical Biology, the Loui- siana State University AgCenter, the International Rice Research Institute, and the Campus Interna- tional de Baillarguet, France. Scientists used a Bt fusion gene, which translates a single...

  5. Department.: Department of public policy Course number: PP 223W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Policy Credits: 3 Contact Person: Mark Robbins Content Area: CA 2 Social Sciences Catalog Copy: PP 223W Wars 3 Citizen Participation in Monroe 4 New York City 's Policies for the Homeless 5 California Water and be about 4 pages in length. The memoranda must be between 750 1,000 words.Style and format requirements

  6. NUMBER: HR 1.02 SECTION: Human Resources

    E-Print Network [OSTI]

    Almor, Amit

    , codified in Sections 8-13-100 through 8-15-1520 of the 1976 South Carolina Code of Laws, as Amended. Copies to #12;2 realize personal gain through official conduct is a violation of that trust. Violations Accountability, and Campaign Reform Act applies to all public officials and public employees of the State

  7. Patching genes to fight disease

    SciTech Connect (OSTI)

    Holzman, D.

    1990-09-03

    The National Institutes of Health has approved the first gene therapy experiments, one of which will try to cure cancer by bolstering the immune system. The applications of such therapy are limited, but the potential aid to people with genetic diseases is great.

  8. Eukaryotic Gene Prediction Kelli Davies

    E-Print Network [OSTI]

    -scale genome sequencing has revolutionized the field of genetics and biology. Sequencing projects require sophisticated computational analysis to manage vast collections of data. Scientists first sequenced a genome, coding genes comprise 95% of the genome.1 Since then, numerous prokaryotic and eukaryotic genomes have

  9. Bounds on Some Ramsey Numbers Involving Quadrilateral +

    E-Print Network [OSTI]

    Radziszowski, Stanislaw P.

    Bounds on Some Ramsey Numbers Involving Quadrilateral + Xiaodong Xu Guangxi Academy of Sciences@cs.rit.edu Abstract. For graphs G 1 , G 2 , · · · , Gm , the Ramsey number R(G 1 , G 2 , · · · , Gm ) is defined Ramsey numbers involving quadrilateral C 4 , including R(C 4 , K 9 ) # 32, 19 # R(C 4 , C 4 , K 4 ) # 22

  10. Predicting landfalling hurricane numbers from basin hurricane numbers: basic statistical analysis

    E-Print Network [OSTI]

    Laepple, T; Penzer, J; Bellone, E; Nzerem, K; Laepple, Thomas; Jewson, Stephen; Penzer, Jeremy; Bellone, Enrica; Nzerem, Kechi

    2007-01-01

    One possible method for predicting landfalling hurricane numbers is to first predict the number of hurricanes in the basin and then convert that prediction to a prediction of landfalling hurricane numbers using an estimated proportion. Should this work better than just predicting landfalling hurricane numbers directly? We perform a basic statistical analysis of this question in the context of a simple abstract model.

  11. Harmonic resolution as a holographic quantum number

    E-Print Network [OSTI]

    Bousso, Raphael

    2009-01-01

    LBNL- 57239 Harmonic resolution as a holographic quantumhep-th/0310223 UCB-PTH-03/26 Harmonic resolution as aquantum number, the harmonic resolution K. The Bekenstein

  12. REFINED BOUNDS ON THE NUMBER OF CONNECTED ...

    E-Print Network [OSTI]

    2011-04-06

    Apr 6, 2011 ... Smith inequality (see Theorem 2.5) a bound on the number of semi- ... then using Smith inequality, have been used before in several different ...

  13. Call Numbers** A, B, C 3rd

    E-Print Network [OSTI]

    Saldin, Dilano

    Call Numbers** A, B, C 3rd Floor Southeast . D, E, F, G, H, J, K, L 3rd Floor West . . . . . P 3rd Floor West . Q, R

  14. Numbers, proof and 'all that jazz'.

    E-Print Network [OSTI]

    2007-01-08

    CHAPTER 1. Numbers, proof and 'all that jazz'. There is a fundamental difference between mathematics and other sciences. In most sciences, one does ...

  15. Gene Expression in the Stallion Testes 

    E-Print Network [OSTI]

    Laughlin, Andy M.

    2011-08-08

    Understanding the genes that regulate spermatogenesis and steroidogenesis in the testis is critical for enhancement of stallion fertility. Stallion testicular samples were used to identify candidate genes by cDNA microarrays ...

  16. Enhanced polymeric nanoparticles for gene delivery

    E-Print Network [OSTI]

    Green, Jordan Jamieson

    2007-01-01

    The potential of gene therapy to treat disease and improve human health is tremendous. The failure of viral gene therapy clinical trials due to toxicity, immunogenicity, and carcinogenicity has been tragic and strongly ...

  17. Naked gene therapy of hepatocyte growth factor for dextran sulfate sodium-induced colitis in mice

    SciTech Connect (OSTI)

    Kanbe, Takamasa |; Murai, Rie; Mukoyama, Tomoyuki; Murawaki, Yoshiyuki |; Hashiguchi, Ko-ichi; Yoshida, Yoko; Tsuchiya, Hiroyuki; Kurimasa, Akihiro; Harada, Ken-ichi; Yashima, Kazuo; Nishimuki, Eiji; Shabana, Noriko; Kishimoto, Yukihiro; Kojyo, Haruhiko; Miura, Kunihiko; Kawasaki, Hironaka; Murawaki, Yoshikazu; Shiota, Goshi . E-mail: gshiota@grape.med.tottori-u.ac.jp

    2006-07-14

    Ulcerative colitis (UC) is progressive and relapsing disease. To explore the therapeutic effects of naked gene therapy of hepatocyte growth factor (HGF) on UC, the SR{alpha} promoter driving HGF gene was intrarectally administered to the mice in which colitis was induced by dextran sulfate sodium (DSS). Expression of the transgene was seen in surface epithelium, lamina propria, and muscularis mucosae. The HGF-treated mice showed reduced colonic mucosal damage and increased body weights, compared with control mice (P < 0.01 and P < 0.05, respectively). The HGF-treated mice displayed increased number of PCNA-positive cells and decreased number of apoptotic cells than in control mice (P < 0.01, each). Phosphorylated AKT was dramatically increased after HGF gene administration, however, phosphorylated ERK1/2 was not altered. Microarray analysis revealed that HGF induced expression of proliferation- and apoptosis-associated genes. These data suggest that naked HGF gene delivery causes therapeutic effects through regulation of many downstream genes.

  18. Plant nitrogen regulatory P-PII genes

    DOE Patents [OSTI]

    Coruzzi, Gloria M. (New York, NY); Lam, Hon-Ming (Hong Kong, HK); Hsieh, Ming-Hsiun (Woodside, NY)

    2001-01-01

    The present invention generally relates to plant nitrogen regulatory PII gene (hereinafter P-PII gene), a gene involved in regulating plant nitrogen metabolism. The invention provides P-PII nucleotide sequences, expression constructs comprising said nucleotide sequences, and host cells and plants having said constructs and, optionally expressing the P-PII gene from said constructs. The invention also provides substantially pure P-PII proteins. The P-PII nucleotide sequences and constructs of the

  19. Uses of antimicrobial genes from microbial genome

    DOE Patents [OSTI]

    Sorek, Rotem; Rubin, Edward M.

    2013-08-20

    We describe a method for mining microbial genomes to discover antimicrobial genes and proteins having broad spectrum of activity. Also described are antimicrobial genes and their expression products from various microbial genomes that were found using this method. The products of such genes can be used as antimicrobial agents or as tools for molecular biology.

  20. Does evolution in body patterning genes drive

    E-Print Network [OSTI]

    Monteiro, Antónia

    to the adult form of a metazoan has, in particular, led to a relatively common and distinctive view of how the effects one might expect it to have on adult phenotype.(3) Whereas mutations in downstream genes (and low-level Hox genes) might cause subtle shifts in morphology, Hox gene mutations can also cause wholesale

  1. INVESTIGATION Gene Genealogies Within a Fixed Pedigree,

    E-Print Network [OSTI]

    INVESTIGATION Gene Genealogies Within a Fixed Pedigree, and the Robustness of Kingman's Coalescent, not as a random quantity. Gene genealogical models should describe the outcome of the percolation of genetic provide a surprisingly accurate description of gene genealogies on a fixed pedigree. We study

  2. Chapter 12 Gene Genealogies Noah A. Rosenberg

    E-Print Network [OSTI]

    Rosenberg, Noah

    Chapter 12 ­ Gene Genealogies Noah A. Rosenberg Program in Molecular and Computational Biology can be viewed as the result of mutations on a scaffold of genetic relationships ­ a gene genealogy, migration, species divergence, and changes in population size, an understanding of gene genealogies

  3. Neural Networks Approaches for Discovering the Learnable Correlation between Gene Function and Gene

    E-Print Network [OSTI]

    Bonner, Anthony

    Neural Networks Approaches for Discovering the Learnable Correlation between Gene Function and Gene novel clustering and Neural Network (NN) approaches for predicting mouse gene functions from gene. Our results show that neural networks can be extremely useful in this area. We present the improved

  4. A Thermodynamic Classification of Real Numbers

    E-Print Network [OSTI]

    Thomas Garrity

    2009-03-15

    A new classification scheme for real numbers is given, motivated by ideas from statistical mechanics in general and work of Knauf and of Fiala and Kleban in particular. Critical for this classification of a real number will be the Diophantine properties of its continued fraction expansion.

  5. Circular Chromatic Ramsey Number Kyle F. Jao

    E-Print Network [OSTI]

    West, Douglas B.

    Circular Chromatic Ramsey Number Kyle F. Jao , Claude Tardif , Douglas B. West , Xuding Zhu, the circular chromatic Ramsey number Rc (F, G) is the infimum of c(H) over graphs H such that every red of a Ramsey problem for the families of homomorphic images of F and G. Letting zk = 3 - 2-k, we prove that zk

  6. 2001 TRAFFIC ZONE BOUNDARIES Zone Numbers

    E-Print Network [OSTI]

    Toronto, University of

    2001 TRAFFIC ZONE BOUNDARIES Zone Numbers & Detailed Definitions #12;2001 TRAFFIC ZONE BOUNDARIES of Toronto Joint Program in Transportation January 2003 #12;PREFACE This report presents the 2001 traffic zone numbers by local municipalities in the 2001 TTS survey area. The second part presents detailed

  7. Real numbers and other completions Fred Richman

    E-Print Network [OSTI]

    Richman, Fred

    Real numbers and other completions Fred Richman Florida Atlantic University Boca Raton, FL 33431 11 March 2007 Abstract A notion of completeness and completion suitable for use in the absence of countable choice is developed. This encompasses the con- struction of the real numbers as well as the completion

  8. Company number 5857955 Wellcome Trust Finance plc

    E-Print Network [OSTI]

    Rambaut, Andrew

    Company number 5857955 Wellcome Trust Finance plc Annual Report and Financial Statements Year ended 30 September 2012 #12;Company number 5857955 Wellcome Trust Finance plc Contents Page Directors Trust Finance plc Directors' Report for the year ended 30 September 2012 Report of the Directors

  9. Company number 5857955 Wellcome Trust Finance plc

    E-Print Network [OSTI]

    Rambaut, Andrew

    Company number 5857955 Wellcome Trust Finance plc Annual Report and Financial Statements Year ended 30 September 2013 #12;Company number 5857955 Wellcome Trust Finance plc Contents Page Directors Trust Finance plc Directors' Report For the year ended 30 September 2013 Report of the Directors

  10. RNG: A Practitioner's Overview Random Number Generation

    E-Print Network [OSTI]

    Mascagni, Michael

    -Kac/path integral methods to solve partial differential equations with random walks Defense: neutronics, nuclear random numbers 1. Each calculation is a numerical experiment Subject to known and unknown sources a calculation with the same numbers Across different machines (modulo arithmetic issues) Parallel

  11. Resolution-Stationary Random Number Generators

    E-Print Network [OSTI]

    L'Ecuyer, Pierre

    of successive output values over their entire period length. For F2-linear generators, the commonly adopted efficient ways of implementing high-quality and long-period Tausworthe generators. Key words: random number un [0, 1) is the output of the generator at step n and the number of bits in this output, L

  12. enter part number BNC / RP-BNC

    E-Print Network [OSTI]

    Berns, Hans-Gerd

    enter part number Products 7/16 1.0/2.3 1.6/5.6 AFI AMC BNC / RP-BNC C FAKRA SMB FME HN MCX Mini ------- Product Search ------- Inventory Search Search Results for: 31-10152-RFX Results: 1 - 1 of 1 Part Number. All rights reserved. Copyright | Terms & Conditions | RF E-Mail Client | Contact Us | Amphenol

  13. Genetic Variation and Evolution of the Size of NBS-LRR-Encoding Gene Family in Cotton and Related Species (Gossypium L.) 

    E-Print Network [OSTI]

    Wu, Yen Hsuan

    2010-07-14

    Most of genes contained in a genome have been shown to exist in forms of families; however, little is known about their variation and evolution during the course of genome evolution. The present study shows that the numbers of the genes of the NBS...

  14. Integrating Ontological Knowledge and Textual Evidence in Estimating Gene and Gene Product Similarity

    SciTech Connect (OSTI)

    Sanfilippo, Antonio P.; Posse, Christian; Gopalan, Banu; Tratz, Stephen C.; Gregory, Michelle L.

    2006-06-08

    With the rising influence of the Gene On-tology, new approaches have emerged where the similarity between genes or gene products is obtained by comparing Gene Ontology code annotations associ-ated with them. So far, these approaches have solely relied on the knowledge en-coded in the Gene Ontology and the gene annotations associated with the Gene On-tology database. The goal of this paper is to demonstrate that improvements to these approaches can be obtained by integrating textual evidence extracted from relevant biomedical literature.

  15. Ramsey numbers and adiabatic quantum computing

    E-Print Network [OSTI]

    Frank Gaitan; Lane Clark

    2012-01-08

    The graph-theoretic Ramsey numbers are notoriously difficult to calculate. In fact, for the two-color Ramsey numbers $R(m,n)$ with $m,n\\geq 3$, only nine are currently known. We present a quantum algorithm for the computation of the Ramsey numbers $R(m,n)$. We show how the computation of $R(m,n)$ can be mapped to a combinatorial optimization problem whose solution can be found using adiabatic quantum evolution. We numerically simulate this adiabatic quantum algorithm and show that it correctly determines the Ramsey numbers R(3,3) and R(2,s) for $5\\leq s\\leq 7$. We then discuss the algorithm's experimental implementation, and close by showing that Ramsey number computation belongs to the quantum complexity class QMA.

  16. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Cao, Guozhong

    @uw.edu (G. Cao). Nano Energy (2013) 2, 769­778 #12;Author's personal copy supercapacitors [1­6], fuel cells to the deposition of tin oxide nanoparticles. As a result, carbon cryogel­tin oxide nanocomposites with optimized

  17. Notes on setting up Geothermal Properties Measurement Model Copy the files setup.exe, setup.lst, and gpm.cab to a temporary

    E-Print Network [OSTI]

    Pennycook, Steve

    Notes on setting up Geothermal Properties Measurement Model Copy the files setup.exe, setup-tube diameter, borehole diameter, borehole depth and deep earth temperature. The easiest way to do

  18. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    's personal copy industrial crops and products 2 8 ( 2 0 0 8 ) 63­72 available at www composites have recently gained importance in various applications as build- ing materials and automotive

  19. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Alvarez, Pedro J.

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most on imported oil and enhance energy security, as well as to mitigate air pollution and greenhouse gas emissions

  20. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Ozgökmen, Tamay M.

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most sensor arrays, and mitigation in case of pollu- tants, such as oil spills. Lagrangian predictability, i

  1. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Herbin, Raphaèle

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most waste storage, oil industry or CO2 storage. Indeed, water­rock interactions like precipitation

  2. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Clemmer, David E.

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most, Molecular weight distributions of asphaltenes and deasphaltened oils studied by laser desorption ionization

  3. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Leu, Tzong-Shyng "Jeremy"

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most in that it is an essential reactant in some processes, such as oil refineries, methanol and ammonia * Corresponding author

  4. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Rothstein, Jonathan

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most and enhanced oil recovery where they are often used as a polymer-free fracture fluid for stimulating oil

  5. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Wang, Zhong L.

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most, are needed for monitoring oil/gas transportations line over long distances. Self-powered sensors are a key

  6. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Urbach, Wladimir

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most into cell membranes [1]. It is also abundant in many vegetable oils (such as sunflower oil). In addition

  7. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Gordon, Dan

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most the coefficients. Examples include modeling flow through heterogeneous media with varying permeability, oil

  8. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Kusiak, Andrew

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most train [13], bearing temperature, oil particulate content, optical strain measurements [14], and so on

  9. This article was published in an Elsevier journal. The attached copy is furnished to the author for non-commercial research and

    E-Print Network [OSTI]

    Azad, Abdul-Majeed

    and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites a surfactant and water­oil microemulsion resulted in the formation of 5 nm spherical Fe particles. By using

  10. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most insulating material and oil fields. Highly crystalline PEEK materials display excellent mechanical, thermal

  11. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Koochesfahani, Manoochehr M.

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cylinders were filled with varying amount of cholesterol powder (1, 2 and 3 g) and dissolved in corn oil

  12. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Kaminski, Edouard

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most are often man-made by-products of industrial processes or catastrophes such as oil fires and nuclear

  13. This article was originally published in a journal published by Elsevier, and the attached copy is provided by Elsevier for the

    E-Print Network [OSTI]

    Sleeman, Derek

    , reproduction and distribution, including without limitation commercial reprints, selling or licensing copies that can be communicated between people and machines. RDF and RDFS [14], DAML+OIL and OWL [1

  14. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Eustice, Ryan

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most for various applications varies greatly. For example, (a, n) sources used in medical or oil

  15. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Van Hirtum, Annemie

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most valve. The oil- injected rotary screw compressor (Copco GA7) is isolated in a sep- arated room

  16. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Hochberg, Michael

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most (e.g., in deep- sea oil-fields) or disaster prevention [1]. Wireless acoustic communication

  17. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Beckermann, Christoph

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most systems, oil recovery, and other applications. The liquid can become supersaturated in a gas species due

  18. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Lucia, Angelo

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most. The specific focus of this article is differences in molecular shape and size in CO2­oil and CO2­oil

  19. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Sottos, Nancy R.

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most method for protection of a variety of oil soluble solvents and reactive epoxy resins surrounded by a thin

  20. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Kusiak, Andrew

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most [8] intro- duced a 3500-hp adjustable speed drive to control an oil pipeline pump. Himavathi

  1. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Santiago, Juan G.

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most refrigeration, oil recovery, and groundwater flow [3,4]. Numerous two-phase flow models have been proposed [3

  2. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    Mohaghegh, Shahab

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most conventional technique and the Fuzzy rock typing. Results (oil production and water breakthrough time

  3. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most. As a result, the interaction of small-scale sedimentary heterogeneity with the fluid me- chanics of water­oil

  4. This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research

    E-Print Network [OSTI]

    or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most years-b). Its efforts to slow the growth of oil imports via investments in coal-to-liquids (CTL

  5. Assessing fitness costs for transgenic Aedes aegypti expressing the GFP marker and transposase genes

    E-Print Network [OSTI]

    Hoddle, Mark S.

    , dengue, and yellow fever has received much interest due to the ability to transform a number of vector that transmits yellow fever. Mosquitoes were altered with two types of transgene, the enhanced GFP gene and two) The development of transgenic mosquitoes that are refractory to the transmission of human diseases such as malaria

  6. Method for determining gene knockouts

    DOE Patents [OSTI]

    Maranas, Costa D; Burgard, Anthony R; Pharkya, Priti

    2013-06-04

    A method for determining candidates for gene deletions and additions using a model of a metabolic network associated with an organism, the model includes a plurality of metabolic reactions defining metabolite relationships, the method includes selecting a bioengineering objective for the organism, selecting at least one cellular objective, forming an optimization problem that couples the at least one cellular objective with the bioengineering objective, and solving the optimization problem to yield at least one candidate.

  7. Method for determining gene knockouts

    DOE Patents [OSTI]

    Maranas, Costas D. (Port Matilda, PA); Burgard, Anthony R. (State College, PA); Pharkya, Priti (State College, PA)

    2011-09-27

    A method for determining candidates for gene deletions and additions using a model of a metabolic network associated with an organism, the model includes a plurality of metabolic reactions defining metabolite relationships, the method includes selecting a bioengineering objective for the organism, selecting at least one cellular objective, forming an optimization problem that couples the at least one cellular objective with the bioengineering objective, and solving the optimization problem to yield at least one candidate.

  8. Gene prioritization aims to identify the most promising genes (or proteins) among a larger pool of candidates

    E-Print Network [OSTI]

    initially developed to help to identify the disease-causing potential candidate genes for asthma, and a sub- sequent association study of 91SNPs in these genes found-onset asthma23 . Beyond positional disease gene identification, gene

  9. Apolipoprotein gene involved in lipid metabolism

    DOE Patents [OSTI]

    Rubin, Edward (Berkeley, CA); Pennacchio, Len A. (Sebastopol, CA)

    2007-07-03

    Methods and materials for studying the effects of a newly identified human gene, APOAV, and the corresponding mouse gene apoAV. The sequences of the genes are given, and transgenic animals which either contain the gene or have the endogenous gene knocked out are described. In addition, single nucleotide polymorphisms (SNPs) in the gene are described and characterized. It is demonstrated that certain SNPs are associated with diseases involving lipids and triglycerides and other metabolic diseases. These SNPs may be used alone or with SNPs from other genes to study individual risk factors. Methods for intervention in lipid diseases, including the screening of drugs to treat lipid-related or diabetic diseases are also disclosed.

  10. 2011 Research Opportunity Fund Awards PI College (dept) Co-PIs College (dep) Title Approved Budget

    E-Print Network [OSTI]

    Sin, Peter

    and Org Studies) Angelini, Thomas COE (MAE) Eric McLamore IFAS (ABE) Angiogenic Scaffolds for Negative genes $80,000 Su, Nan-Yao IFAS (Ent and Nematology and Ft. Lauderdale REC) Monia L. Elliott IFAS (Plant and Their Potential for Production of Novel Antibiotics $79,000 Thomas Chouvenc (post doc) IFAS (Eng/Nemat and FLREC

  11. Position Number: (Assigned when added to Library)

    E-Print Network [OSTI]

    California at Davis, University of

    Position Number: (Assigned when added to Library) 02016240 Dept: INST OF TRANSPORTATION STUDIES distributions to social media and trade media. 20% WEBSITE, SOCIAL MEDIA AND MEDIA MONITORING Monitor trends

  12. Polygonal Numbers, Primes and Ternary Quadratic Forms

    E-Print Network [OSTI]

    Sun, Zhi-Wei

    Polygonal Numbers, Primes and Ternary Quadratic Forms Zhi-Wei Sun Nanjing University Nanjing 210093 three papers: Z. W. Sun [Acta Arith. 2007], S. Guo, H. Pan & Z. W. Sun [Integers, 2007], and B. K. Oh

  13. High speed optical quantum random number generation

    E-Print Network [OSTI]

    Weinfurter, Harald

    High speed optical quantum random number generation Martin F¨urst1,2,, Henning Weier1,2, Sebastian/publicationFile/30276/ais20 pdf.pdf (1999). 2. "Fips 140-2, security requirements for cryptographic modules

  14. Unpredictability and the transmission of numbers

    E-Print Network [OSTI]

    Myers, John M

    2015-01-01

    Curiously overlooked in physics is its dependence on the transmission of numbers. For example the transmission of numerical clock readings is implicit in the concept of a coordinate system. The transmission of numbers and other logical distinctions is often achieved over a computer-mediated communications network in the face of an unpredictable environment. By unpredictable we mean something stronger than the spread of probabilities over given possible outcomes, namely an opening to unforeseeable possibilities. Unpredictability, until now overlooked in theoretical physics, makes the transmission of numbers interesting. Based on recent proofs within quantum theory that provide a theoretical foundation to unpredictability, here we show how regularities in physics rest on a background of channels over which numbers are transmitted. As is known to engineers of digital communications, numerical transmissions depend on coordination reminiscent of the cycle of throwing and catching by players tossing a ball back and...

  15. Department.: Psychology Course Number: PSYC 210W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 210W Course Title: Lab in Cognition Credits: 3 Contact in these experiments, the writing assignments provide a richer and fuller of the nature of psychological inquiry

  16. Department.: Psychology Course Number: PSYC 244W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 244W Course Title: Laboratory in Personality Credits: 3 Psychological Association. The total report is at least 15 pages in length. The final report is the primary

  17. Department.: Psychology Course Number: PSYC 263W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 263W Course Title: Laboratory in Animal Learning or 253 , and consent of instructor; ENGL 105 or 110 or 111 or 250 . W Criteria: Psychology 263W is a lab

  18. Student ID (R) Number ________________________ Semester/Year______ ________________________

    E-Print Network [OSTI]

    Rock, Chris

    Student ID (R) Number ________________________ Semester/Year______ ________________________ THIRD: ______________________________________________________ CHECK ALL THAT APPLY: _____First-time Third Party Student _____TTU Campus Student _____Non sponsor and the Third Party Sponsor Agreement prior to the due date to ensure timely posting of third

  19. Computing the Betti Numbers of Arrangements

    E-Print Network [OSTI]

    2015-08-29

    To our knowledge ... on ?. Categories and Subject Descriptors ... sets defined in terms of such hypersurfaces can be topolog- ... The first bounds on the individual Betti numbers of semi- .... The idea of using filtrations for computing Betti num-.

  20. Send Copy of receipt to: This form is used for a deposit not applied to a Customer's Account or an Invoice in Oracle. Please bring TWO copies

    E-Print Network [OSTI]

    Winfree, Erik

    of money received in advance for future debit card purchases. Patent Royalties Payable: Inventor's portion the Institute and Inventor(s) isknown. Royalties Payable Holding Account: Holding account for deposits and Inventor(s) isunknown. 8. General Ledger Account: Supply General Ledger account number if different from

  1. Dynamical real numbers and living systems

    E-Print Network [OSTI]

    Dhurjati Prasad Datta

    2010-01-11

    Recently uncovered second derivative discontinuous solutions of the simplest linear ordinary differential equation define not only an nonstandard extension of the framework of the ordinary calculus, but also provide a dynamical representation of the ordinary real number system. Every real number can be visualized as a living cell -like structure, endowed with a definite evolutionary arrow. We discuss the relevance of this extended calculus in the study of living systems. We also present an intelligent version of the Newton's first law of motion.

  2. Application of multidisciplinary analysis to gene expression.

    SciTech Connect (OSTI)

    Wang, Xuefel; Kang, Huining; Fields, Chris; Cowie, Jim R.; Davidson, George S.; Haaland, David Michael; Sibirtsev, Valeriy; Mosquera-Caro, Monica P.; Xu, Yuexian; Martin, Shawn Bryan; Helman, Paul; Andries, Erik; Ar, Kerem; Potter, Jeffrey; Willman, Cheryl L.; Murphy, Maurice H.

    2004-01-01

    Molecular analysis of cancer, at the genomic level, could lead to individualized patient diagnostics and treatments. The developments to follow will signal a significant paradigm shift in the clinical management of human cancer. Despite our initial hopes, however, it seems that simple analysis of microarray data cannot elucidate clinically significant gene functions and mechanisms. Extracting biological information from microarray data requires a complicated path involving multidisciplinary teams of biomedical researchers, computer scientists, mathematicians, statisticians, and computational linguists. The integration of the diverse outputs of each team is the limiting factor in the progress to discover candidate genes and pathways associated with the molecular biology of cancer. Specifically, one must deal with sets of significant genes identified by each method and extract whatever useful information may be found by comparing these different gene lists. Here we present our experience with such comparisons, and share methods developed in the analysis of an infant leukemia cohort studied on Affymetrix HG-U95A arrays. In particular, spatial gene clustering, hyper-dimensional projections, and computational linguistics were used to compare different gene lists. In spatial gene clustering, different gene lists are grouped together and visualized on a three-dimensional expression map, where genes with similar expressions are co-located. In another approach, projections from gene expression space onto a sphere clarify how groups of genes can jointly have more predictive power than groups of individually selected genes. Finally, online literature is automatically rearranged to present information about genes common to multiple groups, or to contrast the differences between the lists. The combination of these methods has improved our understanding of infant leukemia. While the complicated reality of the biology dashed our initial, optimistic hopes for simple answers from microarrays, we have made progress by combining very different analytic approaches.

  3. Volume 61, Numbers 1&2 (Complete) 

    E-Print Network [OSTI]

    Dickson, Donald

    2003-01-01

    . Books for review and queries should be sent to: Prof. Donald R. Dickson English Department 4227 Texas A&M University College Station, Texas 77843-4227 E-Mail: scn@tamu.edu WWW: http://www-english.tamu.edu/pubs/scn/ ISSN 0037-3028 SEVENTEENTH...-CENTURY NEWS EDITOR DONALD R. DICKSON Texas A&M University EDITOR EMERITUS Harrison T. Meserole Texas A&M University ASSOCIATE EDITORS James Egan, University of Akron Gene Edward Veith, Concordia University, Wisconsin Jeffrey Walker, Oklahoma State University...

  4. True random numbers from amplified quantum vacuum

    E-Print Network [OSTI]

    M. Jofre; M. Curty; F. Steinlechner; G. Anzolin; J. P. Torres; M. W. Mitchell; V. Pruneri

    2011-10-17

    Random numbers are essential for applications ranging from secure communications to numerical simulation and quantitative finance. Algorithms can rapidly produce pseudo-random outcomes, series of numbers that mimic most properties of true random numbers while quantum random number generators (QRNGs) exploit intrinsic quantum randomness to produce true random numbers. Single-photon QRNGs are conceptually simple but produce few random bits per detection. In contrast, vacuum fluctuations are a vast resource for QRNGs: they are broad-band and thus can encode many random bits per second. Direct recording of vacuum fluctuations is possible, but requires shot-noise-limited detectors, at the cost of bandwidth. We demonstrate efficient conversion of vacuum fluctuations to true random bits using optical amplification of vacuum and interferometry. Using commercially-available optical components we demonstrate a QRNG at a bit rate of 1.11 Gbps. The proposed scheme has the potential to be extended to 10 Gbps and even up to 100 Gbps by taking advantage of high speed modulation sources and detectors for optical fiber telecommunication devices.

  5. Unpredictability and the transmission of numbers

    E-Print Network [OSTI]

    John M. Myers; F. Hadi Madjid

    2015-08-05

    Curiously overlooked in physics is its dependence on the transmission of numbers. For example the transmission of numerical clock readings is implicit in the concept of a coordinate system. The transmission of numbers and other logical distinctions is often achieved over a computer-mediated communications network in the face of an unpredictable environment. By unpredictable we mean something stronger than the spread of probabilities over given possible outcomes, namely an opening to unforeseeable possibilities. Unpredictability, until now overlooked in theoretical physics, makes the transmission of numbers interesting. Based on recent proofs within quantum theory that provide a theoretical foundation to unpredictability, here we show how regularities in physics rest on a background of channels over which numbers are transmitted. As is known to engineers of digital communications, numerical transmissions depend on coordination reminiscent of the cycle of throwing and catching by players tossing a ball back and forth. In digital communications, the players are computers, and the required coordination involves unpredictably adjusting "live clocks" that step these computers through phases of a cycle. We show how this phasing, which we call `logical synchronization,' constrains number-carrying networks, and, if a spacetime manifold in invoked, put "stripes" on spacetime. Via its logically synchronized channels, a network of live clocks serves as a reference against which to locate events. Such a network in any case underpins a coordinate frame, and in some cases the direct use of a network can be tailored to investigate an unpredictable environment. Examples include explorations of gravitational variations near Earth.

  6. Methods for monitoring multiple gene expression

    DOE Patents [OSTI]

    Berka, Randy (Davis, CA); Bachkirova, Elena (Davis, CA); Rey, Michael (Davis, CA)

    2012-05-01

    The present invention relates to methods for monitoring differential expression of a plurality of genes in a first filamentous fungal cell relative to expression of the same genes in one or more second filamentous fungal cells using microarrays containing Trichoderma reesei ESTs or SSH clones, or a combination thereof. The present invention also relates to computer readable media and substrates containing such array features for monitoring expression of a plurality of genes in filamentous fungal cells.

  7. Methods for monitoring multiple gene expression

    DOE Patents [OSTI]

    Berka, Randy; Bachkirova, Elena; Rey, Michael

    2013-10-01

    The present invention relates to methods for monitoring differential expression of a plurality of genes in a first filamentous fungal cell relative to expression of the same genes in one or more second filamentous fungal cells using microarrays containing Trichoderma reesei ESTs or SSH clones, or a combination thereof. The present invention also relates to computer readable media and substrates containing such array features for monitoring expression of a plurality of genes in filamentous fungal cells.

  8. Baryon Number as the Fourth Color

    E-Print Network [OSTI]

    Fornal, Bartosz; Tait, Tim M P

    2015-01-01

    We propose an extension of the Standard Model in which baryon number is promoted to be part of a non-Abelian gauge symmetry at high energies. Specifically, we consider the gauge group SU(4) x SU(2)_L x U(1)_X, where the SU(4) unifies baryon number and color. This symmetry is spontaneously broken down to the Standard Model gauge group at a scale which can be as low as a few TeV. The SU(4) structure implies that each SM quark comes along with an uncolored quark partner, the lightest of which is stabilized by the generalized baryon number symmetry and can play the role of dark matter. We explore circumstances under which one can realize a model of asymmetric dark matter whose relic abundance is connected to the observed baryon asymmetry, and discuss unique signatures that can be searched for at the LHC.

  9. Gene expression abnormalities in the autistic brain

    E-Print Network [OSTI]

    Chow, Maggie Lok Mun

    2011-01-01

    lymphoblastoid cell lines (LCLs) derived from individualsby profiling gene expression in LCLs derived from livingsubjects. LCLs derived from (1) three monozygotic twin pairs

  10. Hypergraph Ramsey Numbers and Adiabatic Quantum Algorithm

    E-Print Network [OSTI]

    Ri Qu; Yan-ru Bao

    2012-07-18

    Gaitan and Clark [Phys. Rev. Lett. 108, 010501 (2012)] have recently presented a quantum algorithm for the computation of the Ramsey numbers R(m, n) using adiabatic quantum evolution. We consider that the two-color Ramsey numbers R(m, n; r) for r-uniform hypergraphs can be computed by using the similar ways in [Phys. Rev. Lett. 108, 010501 (2012)]. In this comment, we show how the computation of R(m, n; r) can be mapped to a combinatorial optimization problem whose solution be found using adiabatic quantum evolution.

  11. Probing lepton number violation on three frontiers

    SciTech Connect (OSTI)

    Deppisch, Frank F. [Department of Physics and Astronomy, University College London (United Kingdom)

    2013-12-30

    Neutrinoless double beta decay constitutes the main probe for lepton number violation at low energies, motivated by the expected Majorana nature of the light but massive neutrinos. On the other hand, the theoretical interpretation of the (non-)observation of this process is not straightforward as the Majorana neutrinos can destructively interfere in their contribution and many other New Physics mechanisms can additionally mediate the process. We here highlight the potential of combining neutrinoless double beta decay with searches for Tritium decay, cosmological observations and LHC physics to improve the quantitative insight into the neutrino properties and to unravel potential sources of lepton number violation.

  12. Determine Ramsey numbers on a quantum computer

    E-Print Network [OSTI]

    Hefeng Wang

    2015-10-07

    We present a quantum algorithm for computing the Ramsey numbers whose computational complexity grows super-exponentially with the number of vertices of a graph on a classical computer. The problem is mapped to a decision problem on a quantum computer, a probe qubit is coupled to a register that represents the problem and detects the energy levels of the problem Hamiltonian. The decision problem is solved by determining whether the probe qubit exhibits resonance dynamics. The algorithm shows a quadratic speedup over its classical counterparts, and the degenerate ground state problem in the adiabatic quantum evolution algorithm for this problem is avoided.

  13. Compare Activities by Number of Employees

    Gasoline and Diesel Fuel Update (EIA)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of Natural GasAdjustments (Billion Cubic Feet)DecadeYear Jan Feb Mar Apr May Jun Jul Aug Sep3,118,592Number of ComputersNumber

  14. Exploring candidate genes for human brain diseases from a brain-specific gene network

    E-Print Network [OSTI]

    Jiang,Tianzi

    identifying multiple candidate genes for genetic human brain diseases from a brain-specific gene network; Candidate genes Many common human brain diseases, such as schizo- phrenia, Alzheimer's disease, Parkinson's disease, depres- sion, etc., have prominent genetic components [1,2]. Most researchers think that large

  15. The New Element Curium (Atomic Number 96)

    DOE R&D Accomplishments [OSTI]

    Seaborg, G. T.; James, R. A.; Ghiorso, A.

    1948-00-00

    Two isotopes of the element with atomic number 96 have been produced by the helium-ion bombardment of plutonium. The name curium, symbol Cm, is proposed for element 96. The chemical experiments indicate that the most stable oxidation state of curium is the III state.

  16. Entropy Numbers, Operators and Support Vector Kernels

    E-Print Network [OSTI]

    Botea, Adi

    feature of the present paper is the manner in which we directly bound the covering numbers of interest Supported by the Australian Research Council and the DFG (# Ja 379/71). P. Fischer and H.U. Simon (Eds.): EuroCOLT'99, LNAI 1572, pp. 285­298, 1999. c Springer-Verlag Berlin Heidelberg 1999 #12;286 Robert C

  17. Code Number: Department of Mechanical Engineering

    E-Print Network [OSTI]

    Feeny, Brian

    that the drag force on a plate of length L is given by = L wallD wdxxF 0 )( , calculate the overall drag if the Reynolds number ReL is large making the drag coefficient small, the drag force FD becomes large. Use of a falling sphere depends on the sphere diameter, sphere density, fluid density, fluid viscosity

  18. Department: HISTORY Course number: 3412 W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department: HISTORY Course number: 3412 W Course title: Intellectual and Social History of Europe]. Intellectual and Social History of Europe in the Nineteenth Century LANSING, DINTENFASS Prerequisite: ENGL 105 or 110 or 111 or 250. Course Information: The course explores the history of European thought in its

  19. QUARTERLY OF APPLIED MATHEMATICS VOLUME , NUMBER 0

    E-Print Network [OSTI]

    Zhu, Song Chun

    reweighting the energy function. We construct ELMs in the model space for two classic statistical learning, two-step EM and Swendsen-Wang cuts, in the energy landscapes. 1. Introduction. In many statisticalQUARTERLY OF APPLIED MATHEMATICS VOLUME , NUMBER 0 XXXX XXXX, PAGES 000­000 MAPPING ENERGY

  20. Maine Number of Natural Gas Consumers

    Annual Energy Outlook [U.S. Energy Information Administration (EIA)]

    20,806 21,142 22,461 23,555 24,765 27,047 1987-2014 Sales 21,141 22,461 23,555 24,765 27,047 1997-2014 Transported 1 0 0 0 0 2010-2014 Commercial Number of Consumers 8,815 9,084...

  1. Department.: Marketing Course number: MKTG 4997W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Marketing Course number: MKTG 4997W Course title: Senior Thesis in Marketing Credits that it become a 'W' course: 4997. Senior Thesis in Marketing (296) Either semester. Three credits. Hours by arrangement. Prerequisite: Open only to Marketing Department Honor Students with consent of instructor

  2. Materials Science Volume 7, Number 4

    E-Print Network [OSTI]

    Poeppelmeier, Kenneth R.

    Materials Science TM Volume 7, Number 4 Technologies for a changing world Nanomaterials for Energy Conversion and Storage Electrode Materials for Lithium Ion Batteries Surface-enhanced Solar Energy Convesion Changing the Landscape of Environmental and Energy Research Through Novel Nanoscale Materials #12

  3. Ramsey numbers of cubes versus cliques

    E-Print Network [OSTI]

    Conlon, David

    The cube graph Q[subscript n] is the skeleton of the n-dimensional cube. It is an n-regular graph on 2[superscript n] vertices. The Ramsey number r(Q[subscript n] ;K[subscript s]) is the minimum N such that every graph of ...

  4. Department: Statistics Course number: STAT 202W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department: Statistics Course number: STAT 202W Title: Undergraduate Seminar II Credits: 1 Contact, and choose one statistical topic to investigate in detail. The student will write a well revised will attend 6-8 seminars per semester, and choose one statistical topic to investigate in detail. The student

  5. Family Name: . . . . . . . . . . . . . . . . . . . . . . . . . . Other Names: . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ID Number: . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

    E-Print Network [OSTI]

    ; } double price = 54.70 + numberComponents 18.36; return price; } (a) [1 mark] What is the name using BlueJ and enter "Yes" in the dialog box asking for the value of ans). What will it print out? HintStuffOut(String ans){ System.out.println("printStuffOut(" + ans + "):"); String first = "Maybe"; String third = ans

  6. Washington Number of Natural Gas Consumers

    Gasoline and Diesel Fuel Update (EIA)

    059,239 1,067,979 1,079,277 1,088,762 1,102,318 1,118,193 1987-2014 Sales 1,067,979 1,079,277 1,088,762 1,102,318 1,118,193 1997-2014 Commercial Number of Consumers 98,965 99,231...

  7. Building Grassmann Numbers from PI-Algebras

    E-Print Network [OSTI]

    Ricardo M. Bentin; Sergio Mota

    2012-04-06

    This works deals with the formal mathematical structure of so called Grassmann Numbers applied to Theoretical Physics, which is a basic concept on Berezin integration. To achieve this purpose we make use of some constructions from relative modern Polynomial Identity Algebras (PI-Algebras) applied to the special case of the Grassmann algebra.

  8. The 17 GHz active region number

    SciTech Connect (OSTI)

    Selhorst, C. L.; Pacini, A. A.; Costa, J. E. R.; Giménez de Castro, C. G.; Valio, A.; Shibasaki, K.

    2014-08-01

    We report the statistics of the number of active regions (NAR) observed at 17 GHz with the Nobeyama Radioheliograph between 1992, near the maximum of cycle 22, and 2013, which also includes the maximum of cycle 24, and we compare with other activity indexes. We find that NAR minima are shorter than those of the sunspot number (SSN) and radio flux at 10.7 cm (F10.7). This shorter NAR minima could reflect the presence of active regions generated by faint magnetic fields or spotless regions, which were a considerable fraction of the counted active regions. The ratio between the solar radio indexes F10.7/NAR shows a similar reduction during the two minima analyzed, which contrasts with the increase of the ratio of both radio indexes in relation to the SSN during the minimum of cycle 23-24. These results indicate that the radio indexes are more sensitive to weaker magnetic fields than those necessary to form sunspots, of the order of 1500 G. The analysis of the monthly averages of the active region brightness temperatures shows that its long-term variation mimics the solar cycle; however, due to the gyro-resonance emission, a great number of intense spikes are observed in the maximum temperature study. The decrease in the number of these spikes is also evident during the current cycle 24, a consequence of the sunspot magnetic field weakening in the last few years.

  9. Department.: Psychology Course Number: PSYC 242W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 242W Course Title: Laboratory in Social Psychology ; PSYC 240 , and consent of instructor. Methods and techniques of research in social psychology psychology in order to be the best resources to the students, given the subject matter. #12;

  10. Department :PSYCHOLOGY Course number: 3370 W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department :PSYCHOLOGY Course number: 3370 W Course title: Current Topics in Clinical Psychology Psychology. Three credits. Either semester. Prerequisite: PSYC 243 or PSYC 245 or PSYC 245W or consent of instructor. May be repeated for credit with a change in topic. Justification: Clinical psychology is an area

  11. Department.: Psychology Course Number: PSYC 245W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 245W Course Title: Abnormal Psychology Credits: 3 Criteria: 1. This course covers topics in abnormal psychology, including specific syndromes in several ways. First, the students must read relevant chapters of the Psychology Student Writer's Manual

  12. Department.: Psychology Course Number: PSYC 232W

    E-Print Network [OSTI]

    Alpay, S. Pamir

    Department.: Psychology Course Number: PSYC 232W Course Title: Laboratory in Developmental Credits psychological research on young children; advanced topics. W Criteria: - The students will perform both as laboratory reports after each is completed. The reports will follow American Psychological Association

  13. Data Conversion in Residue Number System

    E-Print Network [OSTI]

    Zilic, Zeljko

    ;2 Abstract This thesis tackles the problem of data conversion in the Residue Number System (RNS). The RNS has the use of RNS at the applications. In this thesis, we aim at developing efficient schemes for the conversion from the conventional representation to the RNS representation and vice versa. The conventional

  14. Customer Service Specialist Job Number: 54844874

    E-Print Network [OSTI]

    Heller, Barbara

    Customer Service Specialist Job Number: 54844874 Company Name: Baxter International, Inc Job to the customer and/or the sales team including any corrective actions needed to prevent the failure in the future: Medical Information, Distribution Centers, Planning and Deployment, Credit and Collections, Customer

  15. Integrality of L2 -Betti numbers

    E-Print Network [OSTI]

    Schick, Thomas

    Integrality of L2 -Betti numbers Thomas Schick FB Mathematik -- Universit¨at M¨unster Germany Last algebraic question: e-mail: thomas.schick@math.uni-muenster.de www: http://www.math.uni-muenster.de/u/schickt/ Fax: ++49 -251/83 38370 1 #12;2 Thomas Schick 1.2 Definition. Let Z Q be an additive subgroup

  16. Code Number :.............. HEAT TRANSFER QUALIFYING EXAM

    E-Print Network [OSTI]

    Feeny, Brian

    is at 40 °C, estimate the heat transfer per unit length by radiation and convection between the twoCode Number :.............. HEAT TRANSFER QUALIFYING EXAM January 2010 OPEN BOOK (only one book) The heat transfer coefficient c) The length of pipe needed for a 35 °C increase in mean temperature d

  17. Policy Title: Policy Number: Federal Student Aid

    E-Print Network [OSTI]

    Franco, John

    . All such officials shall further distribute the Code to their direct and indirect reports who havePolicy Title: Policy Number: Federal Student Aid Code of Conduct 1.3.3 Category: Administrative Office of the Bursar University of Cincinnati Federal Student Aid Code of Conduct, page 1 of 5 Background

  18. NUMBER: 1530 TITLE: Code of Student Conduct

    E-Print Network [OSTI]

    . For the purposes of this Code, the term "University Official" is inclusive of "Faculty Member" as defined in IV 1530 1 NUMBER: 1530 TITLE: Code of Student Conduct APPROVED: August 27, 1970; Revised June 14, 2012 I. BASIS AND RATIONALE FOR A CODE OF STUDENT CONDUCT Old Dominion University

  19. TEXAS MEMORIAL MUSEUM Speleological Monographs, Number 7

    E-Print Network [OSTI]

    Suarez, Andrew V.

    TEXAS MEMORIAL MUSEUM Speleological Monographs, Number 7 Studies on the CAVE AND ENDOGEAN FAUNA Science Research Laboratory Museum of Texas Tech University, 3301 4th Street Lubbock, Texas 79409 U.S.A. Email: james.cokendolpher@ttu.edu and James R. Reddell Texas Natural Science Center The University

  20. Random Numbers Certified by Bell's Theorem

    E-Print Network [OSTI]

    S. Pironio; A. Acin; S. Massar; A. Boyer de la Giroday; D. N. Matsukevich; P. Maunz; S. Olmschenk; D. Hayes; L. Luo; T. A. Manning; C. Monroe

    2010-10-19

    Randomness is a fundamental feature in nature and a valuable resource for applications ranging from cryptography and gambling to numerical simulation of physical and biological systems. Random numbers, however, are difficult to characterize mathematically, and their generation must rely on an unpredictable physical process. Inaccuracies in the theoretical modelling of such processes or failures of the devices, possibly due to adversarial attacks, limit the reliability of random number generators in ways that are difficult to control and detect. Here, inspired by earlier work on nonlocality based and device independent quantum information processing, we show that the nonlocal correlations of entangled quantum particles can be used to certify the presence of genuine randomness. It is thereby possible to design of a new type of cryptographically secure random number generator which does not require any assumption on the internal working of the devices. This strong form of randomness generation is impossible classically and possible in quantum systems only if certified by a Bell inequality violation. We carry out a proof-of-concept demonstration of this proposal in a system of two entangled atoms separated by approximately 1 meter. The observed Bell inequality violation, featuring near-perfect detection efficiency, guarantees that 42 new random numbers are generated with 99% confidence. Our results lay the groundwork for future device-independent quantum information experiments and for addressing fundamental issues raised by the intrinsic randomness of quantum theory.

  1. MARINE RESEARCH Volume 66, Number 1

    E-Print Network [OSTI]

    Journal of MARINE RESEARCH Volume 66, Number 1 Mean energy balance in the tropical Pacific Ocean requires energy input from the wind. Previous studies estimate that the mean rate of wind work (or wind global energy input into the ocean circulation, it is also critical in maintaining the east-west tilt

  2. MARINE RESEARCH Volume 56, Number 1

    E-Print Network [OSTI]

    Balmforth, Neil

    Journal of MARINE RESEARCH Volume 56, Number 1 Enhanced dispersion of near-inertial waves at San Diego, La Jolla, California, 92093- 0230, U.S.A. Journal of Marine Research, 56, 1­40, 1998 1 #12 the near-inertial energy in the mixed layer returns to backgroundlevels on a time scale of ten to twenty

  3. NUMBER: 1626 TITLE: Information Technology Management

    E-Print Network [OSTI]

    cost of more than $100,000 but less than $1 million. E. University Advisory Council on Technology (UACT technology project estimated to cost $1 million or more or deemed to be mission-critical. VI. Designated1626 - 1 NUMBER: 1626 TITLE: Information Technology Management APPROVED: September 9, 2005 I

  4. Clar number of catacondensed benzenoid hydrocarbons

    E-Print Network [OSTI]

    Klavzar, Sandi

    Clar number of catacondensed benzenoid hydrocarbons Sandi Klavzara, , Petra Zigerta , Ivan Gutmanb sextets in any of the Clar formulae) of a catacondensed benzenoid hydrocarbon: CL is equal to the minimum; Resonance graph; Benzenoid hydrocarbons 1. Introduction Within the theory that was formulated [1, 2

  5. PROCESSING STUDENT RECORDS Generating Permission Numbers

    E-Print Network [OSTI]

    Ottino, Julio M.

    Numbers Find an Existing Value page appears. Enter the desired Term and Subject Area codes in the fields provided or click on the magnifying glass icon to lookup a term or subject (to narrow your search, type to Records and Enrollment, Term Processing, Class Permissions, Class Permissions. The Class Permission

  6. Finding Predictive Gene Groups from Microarray Data

    E-Print Network [OSTI]

    Buehlmann, Peter

    ur Statistik, ETH Zurich, CH-8092 Zurich, Switzerland Abstract Microarray experiments generate large datasets with expression values for thousands of genes, but not more than a few dozens of samples. A challenging task the genes. We present Pelora, an algorithm based on penalized logistic regression analysis, that combines

  7. Finding Predictive Gene Groups from Microarray Data

    E-Print Network [OSTI]

    Buehlmann, Peter

    ¨ur Statistik, ETH Z¨urich, CH-8092 Z¨urich, Switzerland Abstract Microarray experiments generate large datasets with expression values for thousands of genes, but not more than a few dozens of samples. A challenging task the genes. We present Pelora, an algorithm based on penalized logistic regression analysis, that combines

  8. Posttranscriptional gene silencing in nuclei Paul Hoffera

    E-Print Network [OSTI]

    Pikaard, Craig

    (1). RNAi can be divided into two major categories: transcriptional gene silencing (TGS) and posttranscriptional gene silencing (PTGS). Both TGS and PTGS depend on small interfering RNAs (siRNA) or microRNAs (miRNA) that are produced from double-stranded RNA (dsRNA) precursors. TGS occurs in nuclei via DNA methylation and histone

  9. Gene coding for the E1 endoglucanase

    DOE Patents [OSTI]

    Thomas, S.R.; Laymon, R.A.; Himmel, M.E.

    1996-07-16

    The gene encoding Acidothermus cellulolyticus E1 endoglucanase is cloned and expressed in heterologous microorganisms. A new modified E1 endoglucanase enzyme is produced along with variants of the gene and enzyme. The E1 endoglucanase is useful for hydrolyzing cellulose to sugars for simultaneous or later fermentation into alcohol. 6 figs.

  10. HMM-Based Gene Annotation Methods

    SciTech Connect (OSTI)

    Haussler, David; Hughey, Richard; Karplus, Keven

    1999-09-20

    Development of new statistical methods and computational tools to identify genes in human genomic DNA, and to provide clues to their functions by identifying features such as transcription factor binding sites, tissue, specific expression and splicing patterns, and remove homologies at the protein level with genes of known function.

  11. Genes Regulated by Learning in the Hippocampus

    E-Print Network [OSTI]

    Smith, Desmond J.

    Richard M. Leahy,2 and Desmond J. Smith1* 1 Department of Molecular and Medical Pharmacology and Crump hippocampal gene expression in mice undergoing training in the Morris water maze and control mice forced words: DNA microarrays; gene expression; hip- pocampus; mice; Morris water maze The hippocampus

  12. Assignment of Orthologous Genes via Genome Rearrangement

    E-Print Network [OSTI]

    Lonardi, Stefano

    Assignment of Orthologous Genes via Genome Rearrangement Xin Chen, Jie Zheng, Zheng Fu, Peng Nan of genomes is a fundamental and challenging problem in comparative genomics. Existing methods that assign sequence similarity and evolutionary events at a genome level, where orthologous genes are assumed

  13. Page 1 of 33 3 STYLE HEADING NUMBER FOR CHP. (USED FOR FIG. NUMBERING)

    E-Print Network [OSTI]

    Baker, Jack W.

    Page 1 of 33 3 STYLE HEADING NUMBER FOR CHP. (USED FOR FIG. NUMBERING) ACCOUNTING FOR GROUND MOTION intensities considered in the original building design. For modern buildings in the western United States for this spectral shape effect is through selection of a set of ground motions that is specific to the building

  14. Call Numbers Explained 1 8/23/2012 Call Numbers Explained

    E-Print Network [OSTI]

    Su, Xiao

    . In the library, books are organized by call number. 3. A call number classifies a book by its subject and tells in the library. 6. The King Library is unusual because it is both a public library and a university library. Because of this, it uses two different classification systems. That is, two different types of call

  15. Sensitivity in risk analyses with uncertain numbers.

    SciTech Connect (OSTI)

    Tucker, W. Troy; Ferson, Scott

    2006-06-01

    Sensitivity analysis is a study of how changes in the inputs to a model influence the results of the model. Many techniques have recently been proposed for use when the model is probabilistic. This report considers the related problem of sensitivity analysis when the model includes uncertain numbers that can involve both aleatory and epistemic uncertainty and the method of calculation is Dempster-Shafer evidence theory or probability bounds analysis. Some traditional methods for sensitivity analysis generalize directly for use with uncertain numbers, but, in some respects, sensitivity analysis for these analyses differs from traditional deterministic or probabilistic sensitivity analyses. A case study of a dike reliability assessment illustrates several methods of sensitivity analysis, including traditional probabilistic assessment, local derivatives, and a ''pinching'' strategy that hypothetically reduces the epistemic uncertainty or aleatory uncertainty, or both, in an input variable to estimate the reduction of uncertainty in the outputs. The prospects for applying the methods to black box models are also considered.

  16. Diophantine Equations and Congruent Number Equation Solutions

    E-Print Network [OSTI]

    Mamuka Meskhishvili

    2015-04-16

    By using pairs of nontrivial rational solutions of congruent number equation $$ C_N:\\;\\;y^2=x^3-N^2x, $$ constructed are pairs of rational right (Pythagorean) triangles with one common side and the other sides equal to the sum and difference of the squares of the same rational numbers. The parametrizations are found for following Diophantine systems: \\begin{align*} (p^2\\pm q^2)^2-a^2 & =\\square_{1,2}\\,, \\\\[0.2cm] c^2-(p^2\\pm q^2)^2 & =\\square_{1,2}\\,, \\\\[0.2cm] a^2+(p^2\\pm q^2)^2 & =\\square_{1,2}\\,, \\\\[0.2cm] (p^2\\pm q^2)^2-a^2 & =(r^2\\pm s^2)^2. \\end{align*}

  17. A Phase I Archaeological Survey of the Proposed Wellborn Special Utility District Number 2001 Project in Central Brazos County, Texas 

    E-Print Network [OSTI]

    Moore, William

    2015-06-15

    . Copies of the report are on file at the Texas Historical Commission; the Texas Archeological Research Laboratory; the Wellborn Special Utility District; and Brazos Valley Research Associates....

  18. Cost Center: 9417 Job Number: 5501

    E-Print Network [OSTI]

    Princeton Plasma Physics Laboratory

    Cost Center: 9417 Job Number: 5501 Job Title: Coil Bus Runs Job Manager: Mark Smith Estimate (user input) SCHEDULE FY09$K HOURS (priced at FY09 rates) ` % USER INPUT TASKS AND DESCRIPTIONS USER INPU $1**EM(analysisengr) EA**(Designer) EC**EM(computingEng EC**SB(ComputingTec EC**TB(ComputingTec EE**EM(ElctrEngr) EE**SM(SeniorElectr

  19. Automatic Sets of Rational Numbers Eric Rowland

    E-Print Network [OSTI]

    Rowland, Eric

    Automatic Sets of Rational Numbers Eric Rowland Universit´e de Li`ege D´epartement de Math Abstract The notion of a k-automatic set of integers is well-studied. We develop a new notion -- the k-automatic recall a well-studied concept, that of k-automatic set (see, e.g., [8, 9, 2]): Definition 1. We say

  20. Automatic Sets of Rational Numbers Eric Rowland

    E-Print Network [OSTI]

    Rowland, Eric

    Automatic Sets of Rational Numbers Eric Rowland Universitâ??e de Liâ??ege Dâ??epartement de Math Abstract The notion of a k­automatic set of integers is well­studied. We develop a new notion --- the k­automatic, as follows: [L] k = {[w] k : w # L}. (2) We now recall a well­studied concept, that of k­automatic set (see

  1. Tissue-specific gene silencing monitored in circulating RNA

    E-Print Network [OSTI]

    Sehgal, Alfica

    Pharmacologic target gene modulation is the primary objective for RNA antagonist strategies and gene therapy. Here we show that mRNAs encoding tissue-specific gene transcripts can be detected in biological fluids and that ...

  2. Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca

    E-Print Network [OSTI]

    Zhao, Dehua

    Bacterial genes associated with a single trait are often grouped in a contiguous unit of the genome known as a gene cluster. It is difficult to genetically manipulate many gene clusters because of complex, redundant, and ...

  3. Tissue-Specific Gene Delivery via Nanoparticle Coating

    E-Print Network [OSTI]

    Harris, Todd J.

    The use of biomaterials for gene delivery can potentially avoid many of the safety concerns with viral gene delivery. However, the efficacy of polymeric gene delivery methods is low, particularly in vivo. One significant ...

  4. Research Articles Combining Drug and Gene Similarity Measures

    E-Print Network [OSTI]

    Sharan, Roded

    of drug-drug and gene-gene similarity measures, combined with a logistic regression component to detection problems due to multiple gene and compound names. Additional attempts were based on reverse

  5. Fractal sets of dual topological quantum numbers

    E-Print Network [OSTI]

    Wellington da Cruz

    2004-06-18

    The universality classes of the quantum Hall transitions are considered in terms of fractal sets of dual topological quantum numbers filling factors, labelled by a fractal or Hausdorff dimension defined into the interval $1 < h < 2$ and associated with fractal curves. We show that our approach to the fractional quantum Hall effect-FQHE is free of any empirical formula and this characteristic appears as a crucial insight for our understanding of the FQHE. According to our formulation, the FQHE gets a fractal structure from the connection between the filling factors and the Hausdoff dimension of the quantum paths of particles termed fractons which obey a fractal distribution function associated with a fractal von Neumann entropy. This way, the quantum Hall transitions satisfy some properties related to the Farey sequences of rational numbers and so our theoretical description of the FQHE establishes a connection between physics, fractal geometry and number theory. The FQHE as a convenient physical system for a possible prove of the Riemann hypothesis is suggested.

  6. Notices of the AMs VoluMe 55, NuMber 1 Letters to the Editor

    E-Print Network [OSTI]

    Goren, Eyal Z.

    by Seymour Lipschutz in Schaum's Out- lines ...sells a few hundred thousand copies in twenty-six languages. --Seymour Lipschutz Temple University seymour@temple.edu (Received September 14, 2007) Brief History

  7. Characterization of the ptr5{sup +} gene involved in nuclear mRNA export in fission yeast

    SciTech Connect (OSTI)

    Watanabe, Nobuyoshi; Ikeda, Terumasa; Mizuki, Fumitaka [Department of Biological Sciences, Graduate School of Science and Technology, Kumamoto University, Kurokami, Kumamoto 860-8555 (Japan)] [Department of Biological Sciences, Graduate School of Science and Technology, Kumamoto University, Kurokami, Kumamoto 860-8555 (Japan); Tani, Tokio, E-mail: ttani@sci.kumamoto-u.ac.jp [Department of Biological Sciences, Graduate School of Science and Technology, Kumamoto University, Kurokami, Kumamoto 860-8555 (Japan)] [Department of Biological Sciences, Graduate School of Science and Technology, Kumamoto University, Kurokami, Kumamoto 860-8555 (Japan)

    2012-02-03

    Highlights: Black-Right-Pointing-Pointer We cloned the ptr5{sup +} gene involved in nuclear mRNA export in fission yeast. Black-Right-Pointing-Pointer The ptr5{sup +} gene was found to encode nucleoporin 85 (Nup85). Black-Right-Pointing-Pointer Seh1p and Mlo3p are multi-copy suppressors for the ptr5 mutation. Black-Right-Pointing-Pointer Ptr5p/Nup85p functions in nuclear mRNA export through the mRNA export factor Rae1p. Black-Right-Pointing-Pointer Ptr5p/Nup85p interacts genetically with pre-mRNA splicing factors. -- Abstract: To analyze the mechanisms of mRNA export from the nucleus to the cytoplasm, we have isolated eleven mutants, ptr [poly(A){sup +} RNA transport] 1 to 11, which accumulate poly(A){sup +} RNA in the nucleus at a nonpermissive temperature in Schizosaccharomyces pombe. Of those, the ptr5-1 mutant shows dots- or a ring-like accumulation of poly(A){sup +} RNA at the nuclear periphery after shifting to the nonpermissive temperature. We cloned the ptr5{sup +} gene and found that it encodes a component of the nuclear pore complex (NPC), nucleoporin 85 (Nup85). The ptr5-1 mutant shows no defects in protein transport, suggesting the specific involvement of Ptr5p/Nup85p in nuclear mRNA export in S. pombe. We identified Seh1p, a nucleoporin interacting with Nup85p, an mRNA-binding protein Mlo3p, and Sac3p, a component of the TREX-2 complex involved in coupling of nuclear mRNA export with transcription, as multi-copy suppressors for the ptr5-1 mutation. In addition, we found that the ptr5-1 mutation is synthetically lethal with a mutation of the mRNA export factor Rae1p, and that the double mutant exaggerates defective nuclear mRNA export, suggesting that Ptr5p/Nup85p is involved in nuclear mRNA export through Rae1p. Interestingly, the ptr5-1 mutation also showed synthetic effects with several prp pre-mRNA splicing mutations, suggesting a functional linkage between the NPCs and the splicing apparatus in the yeast nucleus.

  8. About the logic of the prime number distribution

    E-Print Network [OSTI]

    Harry K. Hahn

    2008-01-28

    There are two basic number sequences which play a major role in the prime number distribution. The first Number Sequence SQ1 contains all prime numbers of the form 6n+5 and the second Number Sequence SQ2 contains all prime numbers of the form 6n+1. All existing prime numbers seem to be contained in these two number sequences, except of the prime numbers 2 and 3. Riemanns Zeta Function also seems to indicate, that there is a logical connection between the mentioned number sequences and the distribution of prime numbers. This connection is indicated by lines in the diagram of the Zeta Function, which are formed by the points s where the Zeta Function is real. Another key role in the distribution of the prime numbers plays the number 5 and its periodic occurrence in the two number sequences SQ1 and SQ2. All non-prime numbers in SQ1 and SQ2 are caused by recurrences of these two number sequences with increasing wave-lengths in themselves, in a similar fashion as Overtones (harmonics) or Undertones derive from a fundamental frequency. On the contrary prime numbers represent spots in these two basic Number Sequences SQ1 and SQ2 where there is no interference caused by these recurring number sequences. The distribution of the non-prime numbers and prime numbers can be described in a graphical way with a -Wave Model- (or Interference Model) -- see Table 2.

  9. Thesis submission takes place in two stages for both M.Sc. and PhD. students. Students first prepare and submit one or more hard copies of their thesis that will

    E-Print Network [OSTI]

    Ricciardi, Anthony

    TIMING Thesis submission takes place in two stages for both M.Sc. and PhD. students. Students first prepare and submit one or more hard copies of their thesis that will be sent out to prechosen examiners for a written evaluation. After a favourable evaluation a final corrected thesis copy

  10. Uses of antimicrobial genes from microbial genome Sorek, Rotem...

    Office of Scientific and Technical Information (OSTI)

    We describe a method for mining microbial genomes to discover antimicrobial genes and proteins having broad spectrum of activity. Also described are antimicrobial genes and their...

  11. Single, Key Gene Discovery Could Streamline Production of Biofuels...

    Energy Savers [EERE]

    Single, Key Gene Discovery Could Streamline Production of Biofuels Single, Key Gene Discovery Could Streamline Production of Biofuels August 11, 2011 - 3:51pm Addthis WASHINGTON,...

  12. Visualization and Analysis of 3D Gene Expression Data (Technical...

    Office of Scientific and Technical Information (OSTI)

    Technical Report: Visualization and Analysis of 3D Gene Expression Data Citation Details In-Document Search Title: Visualization and Analysis of 3D Gene Expression Data Recent...

  13. The specificity and evolution of gene regulatory elements

    E-Print Network [OSTI]

    Friedman, Robin Carl

    2010-01-01

    The regulation of gene expression underlies the morphological, physiological, and functional differences between human cell types, developmental stages, and healthy and disease states. Gene regulation in eukaryotes is ...

  14. Bulletin of Tibetology: Volume 14 Number 1 : Full issue

    E-Print Network [OSTI]

    Namgyal Institute of Tibetology,

    1978 Price per copy Rs. 7.50 For supply overseas (including air postage) £ 1.00 (British Sterling) 3/78 PRINTED AT THE RADIANT PROCESS, 6A, S. N. BANERJEE ROAD, CALCUTTA 700 013 AND PUBLISHED BY THE DIRECTOR, SIKKIM RESEARCH INSTITUTE... . In the beginning, that is, before Sanskrit made its impact, the annals and chronicles of Tibet were inspired by the Chinese tradition of Shih-chi (the Record of the Scribe=the Record of a Historian). The Chinese method of record-keeping meant a meticulous regard...

  15. Radiation-induced gene responses

    SciTech Connect (OSTI)

    Woloschak, G.E.; Paunesku, T.; Shearin-Jones, P.; Oryhon, J.

    1996-12-31

    In the process of identifying genes that are differentially regulated in cells exposed to ultraviolet radiation (UV), we identified a transcript that was repressed following the exposure of cells to a combination of UV and salicylate, a known inhibitor of NF-kappaB. Sequencing this band determined that it has identify to lactate dehydrogenase, and Northern blots confirmed the initial expression pattern. Analysis of the sequence of the LDH 5` region established the presence of NF-kappaB, Sp1, and two Ap-2 elements; two partial AP- 1; one partial RE, and two halves of E-UV elements were also found. Electromobility shift assays were then performed for the AP-1, NF- kappaB, and E-UV elements. These experiments revealed that binding to NF-kappaB was induced by UV but repressed with salicylic acid; UV did not affect AP-1 binding, but salicylic acid inhibited it alone or following UV exposure; and E-UV binding was repressed by UV, and salicylic acid had little effect. Since the binding of no single element correlated with the expression pattern of LDH, it is likely that multiple elements govern UV/salicylate-mediated expression.

  16. Transgenic rats overexpressing the human MrgX3 gene show cataracts and an abnormal skin phenotype

    SciTech Connect (OSTI)

    Kaisho, Yoshihiko . E-mail: Kaisho_Yoshihiko@takeda.co.jp; Watanabe, Takuya; Nakata, Mitsugu; Yano, Takashi; Yasuhara, Yoshitaka; Shimakawa, Kozo; Mori, Ikuo; Sakura, Yasufumi; Terao, Yasuko; Matsui, Hideki; Taketomi, Shigehisa

    2005-05-13

    The human MrgX3 gene, belonging to the mrgs/SNSRs (mass related genes/sensory neuron specific receptors) family, was overexpressed in transgenic rats using the actin promoter. Two animal lines showed cataracts with liquification/degeneration and swelling of the lens fiber cells. The transient epidermal desquamation was observed in line with higher gene expression. Histopathology of the transgenic rats showed acanthosis and focal parakeratosis. In the epidermis, there was an increase in cellular keratin 14, keratin 10, and loricrin, as well as PGP 9.5 in innervating nerve fibers. These phenotypes accompanied an increase in the number of proliferating cells. These results suggest that overexpression of the human MrgX3 gene causes a disturbance of the normal cell-differentiation process.

  17. Dynamics Modelling of Biolistic Gene Guns

    SciTech Connect (OSTI)

    Zhang, M.; Tao, W.; Pianetta, P.A.

    2009-06-04

    The gene transfer process using biolistic gene guns is a highly dynamic process. To achieve good performance, the process needs to be well understood and controlled. Unfortunately, no dynamic model is available in the open literature for analysing and controlling the process. This paper proposes such a model. Relationships of the penetration depth with the helium pressure, the penetration depth with the acceleration distance, and the penetration depth with the micro-carrier radius are presented. Simulations have also been conducted. The results agree well with experimental results in the open literature. The contribution of this paper includes a dynamic model for improving and manipulating performance of the biolistic gene gun.

  18. Characterization of the Bovine Cathelicidin Gene Family 

    E-Print Network [OSTI]

    Flores, Erin Gillenwaters

    2012-10-19

    and Methods Primer Design Based on available sequence data from the Baylor College of Medicine Bovine Genome Project Btau_4.0 genome assembly, primers were designed for as many unique CATHL loci as possible using Primer3 online (http... pseudogene and one duplicated gene in the CATHL region. The currently annotated CATHL genes, the pseudogene, the duplicated gene, and three STS markers (UniSTS277967, UniSTS 268269, and UniSTS255316) were included in the analysis. Primers for CATHLs 1, 2...

  19. Halo occupation numbers and galaxy bias

    E-Print Network [OSTI]

    J. A. Peacock; R. E. Smith

    2000-06-30

    We propose a heuristic model that displays the main features of realistic theories for galaxy bias. We show that the low-order clustering statistics of the dark-matter distribution depend almost entirely on the locations and density profiles of dark-matter haloes. A hypothetical galaxy catalogue depends on (i) the efficiency of galaxy formation, as manifested by the halo occupation number -- the number of galaxies brighter than some sample limit contained in a halo of a given mass; (ii) the location of these galaxies within their halo. The first factor is constrained by the empirical luminosity function of groups. For the second factor, we assume that one galaxy marks the halo centre, with any remaining galaxies acting as satellites that trace the halo mass. These simple assumptions amount to a recipe for non-local bias, in which the probability of finding a galaxy is not a simple function of its local mass density. We have applied this prescription to some CDM models of current interest, and find that the predictions are close to the observed galaxy correlations for a flat $\\Omega=0.3$ model ($\\Lambda$CDM), but not for an $\\Omega=1$ model with the same power spectrum ($\\tau$CDM). This is an inevitable consequence of cluster normalization for the power spectra: cluster-scale haloes of given mass have smaller core radii for high $\\Omega$, and hence display enhanced small-scale clustering. Finally, the pairwise velocity dispersion of galaxies in the $\\Lambda$CDM model is lower than that of the mass, allowing cluster-normalized models to yield a realistic Mach number for the peculiar velocity field. This is largely due to the strong variation of galaxy-formation efficiency with halo mass that is required in this model.

  20. Texas Rice, Volume II, Number

    E-Print Network [OSTI]

    2002-01-01

    Texas A&M University System Agricultural Research and Extension Center Beaumont, Texas June 2002 Volume II Number 4 Texas Rice A Tribute to David Wintermann 28th Annual Field Day at Eagle Lake David Wintermann’s active in- volvement... Sugar Refinery near Eagle Lake and in 1909 he, along with other investors, in- corporated Lakeside Irrigation Co. (previously Eagle Lake Ir- rigation Co.) When R.J. died in 1910, he left all his prop- erty to his wife Louise, and $25,000 to each of his...

  1. Texas Rice, Volume VII, Number

    E-Print Network [OSTI]

    2007-01-01

    Texas A&M University System Agricultural Research and Extension Center Beaumont, Texas September 2007 Volume VII Number 7 Texas Rice Nobel Peace Prize Recipient Dr. Norman Borlaug continued on page 4 September of 2003 was a time etched... Tabien, and Dr. Lee Tarpley. Four years ago this month, the Texas A&M Research and Exten- sion Center at Beaumont was hon- ored to welcome one of the most influential people in agriculture. Nobel Peace Prize recipient, Dr. Norman Borlaug, has a long...

  2. Health Code Number (HCN) Development Procedure

    SciTech Connect (OSTI)

    Petrocchi, Rocky; Craig, Douglas K.; Bond, Jayne-Anne; Trott, Donna M.; Yu, Xiao-Ying

    2013-09-01

    This report provides the detailed description of health code numbers (HCNs) and the procedure of how each HCN is assigned. It contains many guidelines and rationales of HCNs. HCNs are used in the chemical mixture methodology (CMM), a method recommended by the department of energy (DOE) for assessing health effects as a result of exposures to airborne aerosols in an emergency. The procedure is a useful tool for proficient HCN code developers. Intense training and quality assurance with qualified HCN developers are required before an individual comprehends the procedure to develop HCNs for DOE.

  3. Compare Activities by Number of Computers

    Gasoline and Diesel Fuel Update (EIA)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of Natural GasAdjustments (Billion Cubic Feet)DecadeYear Jan Feb Mar Apr May Jun Jul Aug Sep3,118,592Number of Computers

  4. Property:PhoneNumber | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTION J APPENDIX ECoop Inc Jump to:Newberg,Energy LLCALLETE Inc dEA EIS ReportNumberOfUnitsOwners

  5. Climate Zone Number 4 | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTIONRobertsdale, Alabama (Utility Company) Jump to:NewMinnesota:Protection Action2BZone Number 4 Jump

  6. Climate Zone Number 6 | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTIONRobertsdale, Alabama (Utility Company) Jump to:NewMinnesota:Protection Action2BZone Number 4

  7. Climate Zone Number 7 | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTIONRobertsdale, Alabama (Utility Company) Jump to:NewMinnesota:Protection Action2BZone Number 4Climate

  8. Climate Zone Number 8 | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTIONRobertsdale, Alabama (Utility Company) Jump to:NewMinnesota:Protection Action2BZone Number

  9. Climate Zone Number 2 | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTION J APPENDIX ECoopButtePower Ventures Jump to: navigation, search Name:Climate Zone Number 2 Jump to:

  10. Climate Zone Number 3 | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTION J APPENDIX ECoopButtePower Ventures Jump to: navigation, search Name:Climate Zone Number 2 Jump

  11. Climate Zone Number 5 | Open Energy Information

    Open Energy Info (EERE)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on QA:QA J-E-1 SECTION J APPENDIX ECoopButtePower Ventures Jump to: navigation, search Name:Climate Zone Number 2

  12. A comprehensive gene expression atlas of sex- and tissue-specificity in the malaria vector, Anopheles gambiae.

    E-Print Network [OSTI]

    Baker, Dean A; Nolan, Tony; Fischer, Bettina; Pinder, Alex; Crisanti, Andrea; Russell, Steven R

    2011-06-07

    ) The number of overlapping orthologous genes between Anopheles and Drosophila expression clusters calculated with a hypergeometric probability distribution after multiple correction. Light grey (P emitted by humans, a behaviour mediated by receptors in the antennal sensilla [7]. This activity is not exhibited by males, who feed entirely on nectar, and we presume that the female elevated expression...

  13. Gene Up-Regulation in Heart during Mammalian Hibernation Andreas Fahlman, Janet M. Storey, and Kenneth B. Storey

    E-Print Network [OSTI]

    Fahlman, Andreas

    metabolism for function under extreme hypothermia, change patterns of fuel use to a primary reliance involve changes to the types or amounts of selected proteins and enzymes in hibernator cells arousal (9, 31). With the advent of good techniques for eval- uating changes in gene expression, a number

  14. Author's personal copy BEM simulations of potential flow with viscous effects as applied

    E-Print Network [OSTI]

    Chan, Derek Y C

    Particulate Fluids Processing Centre, Department of Mathematics and Statistics, The University of Melbourne for different size bubbles have been compared to recent experimental data in clean water and to numerical at high Reynolds numbers. The focus of this paper is on modelling the behaviour of rising bubbles in clean

  15. Gene induction and adaptive responses in irradiated cells: Mechanisms and clinical implications

    SciTech Connect (OSTI)

    Lehnert, S. [McGill Univ., Quebec (Canada)

    1995-01-01

    A characteristic of living things, conserved throughout evolution, is their capacity to react to environmental insult. From bacteria to yeast to human cells, environmental inputs induce changes in the program of genes expressed. A subset of this response, of particular interest to the radiobiologists and radiation oncologists who gathered for this meeting, is the case of radiation-mediated gene induction. A large number of genes have been reported to be up/down-regulated by ionizing radiation; some of these have been identified, while others have so far preserved their anonymity as bands and blots on gels and membranes. It is safe to say that many more such genes will be discovered in the future as the scientific and clinical significance of these processes is better understood. Substantial evidence, extending back many years, suggests the existence of an adaptive response, apparent as cellular radioprotective mechanisms which can be up-regulated after a small dose of radiation. At the molecular level, the timing of the changes in expression of induced genes and of the changes in levels of nuclear and cytoplasmic proteins which they encode is such as to support involvement of these elements in induced radioresistance. The adaptive response is one component of the battery of intrinsic factors which influence the response of tumors to radiation. Radiation-induced gene products encompass a spectrum of activities including cell cycle control, DNA repair, signal transduction, apoptosis and oncogenesis, all of which can influence tumor radioresponse and contribute to the multifactorial radioresistant phenotype. Growth factors and cytokines are encoded by several early and late-responding genes whose expression is up-regulated by radiation. These must be assumed to affect the toxicity of radiation toward early- and late-responding normal tissues profoundly by promoting repair or conversely by acting synergistically to enhance radiation damage.

  16. Grammatical morphology as a source of early number word meanings

    E-Print Network [OSTI]

    2013-01-01

    to counting is important to learning number word meanings,hearing number words used outside of these routines—in thewere given two tests of number word knowledge. The Give-a-

  17. Why is number word learning hard? Evidence from bilingual learners

    E-Print Network [OSTI]

    Wagner, Katie; Kimura, Katherine; Cheung, Pierina; Barner, David

    2015-01-01

    s acquisition of the number words and the counting system.as a source of early number word meanings. PNAS, 110(46),the acquisition of number words. Journal of Child Language,

  18. Pure and Applied Mathematics Quarterly Volume 2, Number 2

    E-Print Network [OSTI]

    Waldschmidt, Michel

    Keywords: Periods, transcendental numbers, irrationality, integrals, series, Diophantine approximation, irrationality measures, transcendence measures, measures of algebraic independence, Gamma function, Beta: to decide whether a period is a rational number, an irrational algebraic number or else a tran- scendental

  19. The New Element Californium (Atomic Number 98)

    DOE R&D Accomplishments [OSTI]

    Seaborg, G. T.; Thompson, S. G.; Street, K. Jr.; Ghiroso, A.

    1950-06-19

    Definite identification has been made of an isotope of the element with atomic number 98 through the irradiation of Cm{sup 242} with about 35-Mev helium ions in the Berkeley Crocker Laboratory 60-inch cyclotron. The isotope which has been identified has an observed half-life of about 45 minutes and is thought to have the mass number 244. The observed mode of decay of 98{sup 244} is through the emission of alpha-particles, with energy of about 7.1 Mev, which agrees with predictions. Other considerations involving the systematics of radioactivity in this region indicate that it should also be unstable toward decay by electron capture. The chemical separation and identification of the new element was accomplished through the use of ion exchange adsorption methods employing the resin Dowex-50. The element 98 isotope appears in the eka-dysprosium position on elution curves containing berkelium and curium as reference points--that is, it precedes berkelium and curium off the column in like manner that dysprosium precedes terbium and gadolinium. The experiments so far have revealed only the tripositive oxidation state of eka-dysprosium character and suggest either that higher oxidation states are not stable in aqueous solutions or that the rates of oxidation are slow. The successful identification of so small an amount of an isotope of element 98 was possible only through having made accurate predictions of the chemical and radioactive properties.

  20. Distance matters: the impact of gene proximity in bacterial gene regulation

    E-Print Network [OSTI]

    Otto Pulkkinen; Ralf Metzler

    2013-05-13

    Following recent discoveries of colocalization of downstream-regulating genes in living cells, the impact of the spatial distance between such genes on the kinetics of gene product formation is increasingly recognized. We here show from analytical and numerical analysis that the distance between a transcription factor (TF) gene and its target gene drastically affects the speed and reliability of transcriptional regulation in bacterial cells. For an explicit model system we develop a general theory for the interactions between a TF and a transcription unit. The observed variations in regulation efficiency are linked to the magnitude of the variation of the TF concentration peaks as a function of the binding site distance from the signal source. Our results support the role of rapid binding site search for gene colocalization and emphasize the role of local concentration differences.