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  1. DOE Joint Genome Institute 2008 Progress Report

    SciTech Connect (OSTI)

    Gilbert, David

    2009-03-12

    While initially a virtual institute, the driving force behind the creation of the DOE Joint Genome Institute in Walnut Creek, California in the Fall of 1999 was the Department of Energy's commitment to sequencing the human genome. With the publication in 2004 of a trio of manuscripts describing the finished 'DOE Human Chromosomes', the Institute successfully completed its human genome mission. In the time between the creation of the Department of Energy Joint Genome Institute (DOE JGI) and completion of the Human Genome Project, sequencing and its role in biology spread to fields extending far beyond what could be imagined when the Human Genome Project first began. Accordingly, the targets of the DOE JGI's sequencing activities changed, moving from a single human genome to the genomes of large numbers of microbes, plants, and other organisms, and the community of users of DOE JGI data similarly expanded and diversified. Transitioning into operating as a user facility, the DOE JGI modeled itself after other DOE user facilities, such as synchrotron light sources and supercomputer facilities, empowering the science of large numbers of investigators working in areas of relevance to energy and the environment. The JGI's approach to being a user facility is based on the concept that by focusing state-of-the-art sequencing and analysis capabilities on the best peer-reviewed ideas drawn from a broad community of scientists, the DOE JGI will effectively encourage creative approaches to DOE mission areas and produce important science. This clearly has occurred, only partially reflected in the fact that the DOE JGI has played a major role in more than 45 papers published in just the past three years alone in Nature and Science. The involvement of a large and engaged community of users working on important problems has helped maximize the impact of JGI science. A seismic technological change is presently underway at the JGI. The Sanger capillary-based sequencing process that

  2. Microbial Genomics Data from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    As of March 2008, The Joint Genome Institute has released 296 Prokaryotic microbial sites, with 216 in finished status.

  3. Today, DOE's Joint Genome Institute (a

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    1 612011 6.2 Decoding the Human Genome Scientists are close to completing the genetic blueprint for a human being, thanks in large part to Office of Science funding. DOE was the ...

  4. 2013 Progress Report -- DOE Joint Genome Institute (Program Document) |

    Office of Scientific and Technical Information (OSTI)

    SciTech Connect Program Document: 2013 Progress Report -- DOE Joint Genome Institute Citation Details In-Document Search Title: 2013 Progress Report -- DOE Joint Genome Institute In October 2012, we introduced a 10-Year Strategic Vision [http://bit.ly/JGI-Vision] for the Institute. A central focus of this Strategic Vision is to bridge the gap between sequenced genomes and an understanding of biological functions at the organism and ecosystem level. This involves the continued massive-scale

  5. Microbial Genomics Data from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    The JGI makes high-quality genome sequencing data freely available to the greater scientific community through its web portal. Having played a significant role in the federally funded Human Genome Project -- generating the complete sequences of Chromosomes 5, 16, and 19--the JGI has now moved on to contributing in other critical areas of genomics research. While NIH-funded genome sequencing activities continue to emphasize human biomedical targets and applications, the JGI has since shifted its focus to the non-human components of the biosphere, particularly those relevant to the science mission of the Department of Energy. With efficiencies of scale established at the PGF, and capacity now exceeding three billion bases generated on a monthly basis, the JGI has tackled scores of additional genomes. These include more than 60 microbial genomes and many important multicellular organisms and communities of microbes. In partnership with other federal institutions and universities, the JGI is in the process of sequencing a frog (Xenopus tropicalis), a green alga (Chlamydomonas reinhardtii), a diatom (Thalassiosira pseudonana) , the cottonwood tree (Populus trichocarpa), and a host of agriculturally important plants and plant pathogens. Microorganisms, for example those that thrive under extreme conditions such as high acidity, radiation, and metal contamination, are of particular interest to the DOE and JGI. Investigations by JGI and its partners are shedding light on the cellular machinery of microbes and how they can be harnessed to clean up contaminated soil or water, capture carbon from the atmosphere, and produce potentially important sources of energy such as hydrogen and methane. [Excerpt from the JGI page "Who We Are" at http://www.jgi.doe.gov/whoweare/whoweare.html] From the JGI webportal users can view a photo grid of organisims, check assemblies for status, access the Integrated Microbial Genomes (IMG) system to do comparative analysis of publicly available

  6. DOE Joint Genome Institute | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    DOE Joint Genome Institute Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Bioimaging Technology DOE Joint Genome Institute Structural Biology Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Climate and Environmental Sciences Division (CESD) Research Abstracts Searchable Archive of BER Highlights External link

  7. 2013 Progress Report -- DOE Joint Genome Institute

    SciTech Connect (OSTI)

    2013-11-01

    In October 2012, we introduced a 10-Year Strategic Vision [http://bit.ly/JGI-Vision] for the Institute. A central focus of this Strategic Vision is to bridge the gap between sequenced genomes and an understanding of biological functions at the organism and ecosystem level. This involves the continued massive-scale generation of sequence data, complemented by orthogonal new capabilities to functionally annotate these large sequence data sets. Our Strategic Vision lays out a path to guide our decisions and ensure that the evolving set of experimental and computational capabilities available to DOE JGI users will continue to enable groundbreaking science.

  8. 11th Annual DOE Joint Genome Institute Genomics of Energy & Environment Meeting

    Broader source: Energy.gov [DOE]

    The 11th Annual DOE Joint Genome Institute Genomics of Energy & Environment Meeting will be held March 21–25, 2016 in Walnut Creek, California. The meeting will gather together experts and researchers working in energy and environmental genomics and synthetic biology, and it will have a special focus on the work done at the DOE Joint Genome Institute. Bioenergy Technologies Office Technology Manager Daniel Fishman will be in attendance.

  9. Eukaryotic Genomics Data from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    The JGI makes high-quality genome sequencing data freely available to the greater scientific community through its web portal. Having played a significant role in the federally funded Human Genome Project -- generating the complete sequences of Chromosomes 5, 16, and 19--the JGI has now moved on to contributing in other critical areas of genomics research. While NIH-funded genome sequencing activities continue to emphasize human biomedical targets and applications, the JGI has since shifted its focus to the non-human components of the biosphere, particularly those relevant to the science mission of the Department of Energy. With efficiencies of scale established at the PGF, and capacity now exceeding three billion bases generated on a monthly basis, the JGI has tackled scores of additional genomes. These include more than 60 microbial genomes and many important multicellular organisms and communities of microbes. In partnership with other federal institutions and universities, the JGI is in the process of sequencing a frog (Xenopus tropicalis), a green alga (Chlamydomonas reinhardtii), a diatom (Thalassiosira pseudonana) , the cottonwood tree (Populus trichocarpa), and a host of agriculturally important plants and plant pathogens. Microorganisms, for example those that thrive under extreme conditions such as high acidity, radiation, and metal contamination, are of particular interest to the DOE and JGI. Investigations by JGI and its partners are shedding light on the cellular machinery of microbes and how they can be harnessed to clean up contaminated soil or water, capture carbon from the atmosphere, and produce potentially important sources of energy such as hydrogen and methane. [Excerpt from the JGI page "Who We Are" at http://www.jgi.doe.gov/whoweare/whoweare.html] From the JGI webportal users can choose Eukaryotic genomes from a photo list, access the JGI FTP directories to download data files, use the Tree of Life navigation tool, or choose a genome and go

  10. Eukaryotic Genomics Data from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    From the JGI webportal users can choose Eukaryotic genomes from a photo list, access the JGI FTP directories to download data files, use the Tree of Life navigation tool, or choose a genome and go directly to a website specific to that one genome. The individual sites include direct access to download sequence files, BLAST, search, view and navigate the genomic annotations.

  11. Integrated Microbial Genomes (IMG) System from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and annotating genomes, genes and functions, individually or in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through quarterly releases. IMG is provided by the DOE-Joint Genome Institute (JGI) and is available from http://img.jgi.doe.gov. [Abstract from The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions; Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Natalia N. Ivanova and Nikos C. Kyrpides; Nucleic Acids Research, 2008, Vol. 36. (Database Issue) See also the companion system, Integrated Microbial Genomes with Microbiome Samples.

  12. 2013 Progress Report -- DOE Joint Genome Institute None 59 BASIC...

    Office of Scientific and Technical Information (OSTI)

    bit.lyJGI-Vision for the Institute. A central focus of this Strategic Vision is to bridge the gap between sequenced genomes and an understanding of biological functions at the...

  13. Illumina Production Sequencing at the DOE Joint Genome Institute - Workflow and Optimizations

    SciTech Connect (OSTI)

    Tarver, Angela; Fern, Alison; Diego, Matthew San; Kennedy, Megan; Zane, Matthew; Daum, Christopher; Hack, Christopher; Tang, Eric; Deshpande, Shweta; Cheng, Jan-Fang; Roberts, Simon; Alexandre, Melanie; Harmon-Smith, Miranda; Lucas, Susan

    2010-06-18

    The U.S. Department of Energy (DOE) Joint Genome Institute?s (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the DOE mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI?s Production Sequencing group, the Illumina Genome Analyzer pipeline has been established as one of three sequencing platforms, along with Roche/454 and ABI/Sanger. Optimization of the Illumina pipeline has been ongoing with the aim of continual process improvement of the laboratory workflow. These process improvement projects are being led by the JGI?s Process Optimization, Sequencing Technologies, Instrumentation& Engineering, and the New Technology Production groups. Primary focus has been on improving the procedural ergonomics and the technicians? operating environment, reducing manually intensive technician operations with different tools, reducing associated production costs, and improving the overall process and generated sequence quality. The U.S. DOE JGI was established in 1997 in Walnut Creek, CA, to unite the expertise and resources of five national laboratories? Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest ? along with HudsonAlpha Institute for Biotechnology. JGI is operated by the University of California for the U.S. DOE.

  14. Joint Genome Institute (JGI) | U.S. DOE Office of Science (SC)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Joint Genome Institute (JGI) Biological and Environmental Research (BER) BER Home About Research Facilities User Facilities Atmospheric Radiation Measurement Climate Research Facility (ARM) Environmental Molecular Sciences Laboratory (EMSL) Joint Genome Institute (JGI) Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) Community Resources Contact Information Biological and Environmental Research U.S. Department of Energy

  15. Joint Genome Institute's Automation Approach and History

    SciTech Connect (OSTI)

    Roberts, Simon

    2006-07-05

    Department of Energy/Joint Genome Institute (DOE/JGI) collaborates with DOE national laboratories and community users, to advance genome science in support of the DOE missions of clean bio-energy, carbon cycling, and bioremediation.

  16. DOE Joint Genome Institute: A DOE Office of Science User Facility...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Institute About Us Phone Book Contact Us Search Our Science Our DOE Mission Areas DOE Bioenergy Research Centers Science Programs Science Highlights Scientists at JGI Our Projects...

  17. Illumina GA IIx& HiSeq 2000 Production Sequenccing and QC Analysis Pipelines at the DOE Joint Genome Institute

    SciTech Connect (OSTI)

    Daum, Christopher; Zane, Matthew; Han, James; Kennedy, Megan; San Diego, Matthew; Copeland, Alex; Li, Mingkun; Lucas, Susan

    2011-01-31

    The U.S. Department of Energy (DOE) Joint Genome Institute's (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI's Production Sequencing group, a robust Illumina Genome Analyzer and HiSeq pipeline has been established. Optimization of the sesequencer pipelines has been ongoing with the aim of continual process improvement of the laboratory workflow, reducing operational costs and project cycle times to increases ample throughput, and improving the overall quality of the sequence generated. A sequence QC analysis pipeline has been implemented to automatically generate read and assembly level quality metrics. The foremost of these optimization projects, along with sequencing and operational strategies, throughput numbers, and sequencing quality results will be presented.

  18. Robotic Enrichment Processing of Roche 454 Titanium Emlusion PCR at the DOE Joint Genome Institute

    SciTech Connect (OSTI)

    Hamilton, Matthew; Wilson, Steven; Bauer, Diane; Miller, Don; Duffy-Wei, Kecia; Hammon, Nancy; Lucas, Susan; Pollard, Martin; Cheng, Jan-Fang

    2010-05-28

    Enrichment of emulsion PCR product is the most laborious and pipette-intensive step in the 454 Titanium process, posing the biggest obstacle for production-oriented scale up. The Joint Genome Institute has developed a pair of custom-made robots based on the Microlab Star liquid handling deck manufactured by Hamilton to mediate the complexity and ergonomic demands of the 454 enrichment process. The robot includes a custom built centrifuge, magnetic deck positions, as well as heating and cooling elements. At present processing eight emulsion cup samples in a single 2.5 hour run, these robots are capable of processing up to 24 emulsion cup samples. Sample emulsions are broken using the standard 454 breaking process and transferred from a pair of 50ml conical tubes to a single 2ml tube and loaded on the robot. The robot performs the enrichment protocol and produces beads in 2ml tubes ready for counting. The robot follows the Roche 454 enrichment protocol with slight exceptions to the manner in which it resuspends beads via pipette mixing rather than vortexing and a set number of null bead removal washes. The robotic process is broken down in similar discrete steps: First Melt and Neutralization, Enrichment Primer Annealing, Enrichment Bead Incubation, Null Bead Removal, Second Melt and Neutralization and Sequencing Primer Annealing. Data indicating our improvements in enrichment efficiency and total number of bases per run will also be shown.

  19. 11th Annual Energy Department Joint Genome Institute Genomics...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    11th Annual Energy Department Joint Genome Institute Genomics of Energy & Environment Meeting 11th Annual Energy Department Joint Genome Institute Genomics of Energy & Environment ...

  20. Joint Genome Institute Progress Report 2002-2005

    SciTech Connect (OSTI)

    Gilbert, David

    2005-10-03

    Progress report covering activities at the DOE-Joint Genome Institute in Walnut Creek, California for the period 2002-2005.

  1. Human Genome: DOE Origins

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Human Genome Research: DOE Origins Resources with Additional Information Charles DeLisi Charles DeLisi The genesis of the Department of Energy (DOE) human genome project took place ...

  2. Human Genome: DOE Origins

    Office of Scientific and Technical Information (OSTI)

    of the Department of Energy; DOE Technical Report; 1988 Mapping and Sequencing the Human Genome; DOE Technical Report; 1988 Understanding our Genetic Inheritance: The U.S....

  3. 11th Annual Energy Department Joint Genome Institute Genomics of Energy & Environment Meeting

    Broader source: Energy.gov [DOE]

    The 11th Annual DOE Joint Genome Institute Genomics of Energy & Environment Meeting will be held March 21–25, 2016 in Walnut Creek, California. The meeting will gather together experts and researchers working in energy and environmental genomics and synthetic biology, and it will have a special focus on the work done at the DOE Joint Genome Institute. Bioenergy Technologies Office Technology Manager Daniel Fishman will be in attendance.

  4. Joint DOE-Rosatom Statement

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Joint Statement on the U.S. - Russian Excess Weapon-grade Plutonium Disposition Program The U.S. Department of Energy (DOE) and the Federal Atomic Energy Agency, Russian Federation ...

  5. A Taste of Algal Genomes from the Joint Genome Institute

    SciTech Connect (OSTI)

    Kuo, Alan; Grigoriev, Igor

    2012-06-17

    Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and economic costs through toxic blooms, provide models for the study of symbiosis, photosynthesis, and eukaryotic evolution, and are candidate sources for bio-fuels; all of these research areas are part of the mission of DOE's Joint Genome Institute (JGI). To date JGI has sequenced, assembled, annotated, and released to the public the genomes of 18 species and strains of algae, sampling almost all of the major clades of photosynthetic eukaryotes. With more algal genomes currently undergoing analysis, JGI continues its commitment to driving forward basic and applied algal science. Among these ongoing projects are the pan-genome of the dominant coccolithophore Emiliania huxleyi, the interrelationships between the 4 genomes in the nucleomorph-containing Bigelowiella natans and Guillardia theta, and the search for symbiosis genes of lichens.

  6. Genomic Science | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Genomic Science Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Bioimaging Technology DOE Joint Genome Institute Structural Biology Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Climate and Environmental Sciences Division (CESD) Research Abstracts Searchable Archive of BER Highlights External link Facilities

  7. Assembling Complex Plant Genomes | U.S. DOE Office of Science...

    Office of Science (SC) Website

    Scientists from the Department of Energy's (DOE) Joint Genome Institute (JGI) teamed with other researchers to develop and test the POPSEQ approach on the barley genome. The plant ...

  8. The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

    SciTech Connect (OSTI)

    Nordberg, Henrik; Cantor, Michael; Dushekyo, Serge; Hua, Susan; Poliakov, Alexander; Shabalov, Igor; Smirnova, Tatyana; Grigoriev, Igor V.; Dubchak, Inna

    2013-10-10

    The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a national user facility, serves the diverse scientific community by providing integrated high-throughput sequencing and computational analysis to enable system-based scientific approaches in support of DOE missions related to clean energy generation and environmental characterization. The JGI Genome Portal (http://genome.jgi.doe.gov) provides unified access to all JGI genomic databases and analytical tools. The JGI maintains extensive data management systems and specialized analytical capabilities to manage and interpret complex genomic data. A user can search, download and explore multiple data sets available for all DOE JGI sequencing projects including their status, assemblies and annotations of sequenced genomes. Here we describe major updates of the Genome Portal in the past 2 years with a specific emphasis on efficient handling of the rapidly growing amount of diverse genomic data accumulated in JGI.

  9. Human Genome: DOE Origins

    Office of Scientific and Technical Information (OSTI)

    produced the first atomic bombs, and concern about how radiation caused genetic damage. ... Impact of Radiation Biology on Fundamental Insights in Biology; DOE Technical Report; July ...

  10. Introduction to Using NERSC for the Joint Genome Institute

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NERSC Introduction to Using NERSC for the Joint Genome Institute May 2, 2011 jgi logo sm NERSC Training Event 1:00-5:00 p.m. PDT May 2, 2011 Joint Genome Institute, 2800 Mitchell...

  11. DOE Joint Solid-State Lighting Roundtables on Science Challenges...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    DOE Joint Solid-State Lighting Roundtables on Science Challenges DOE Joint Solid-State Lighting Roundtables on Science Challenges PDF icon 2014BES-EEREroundtables...

  12. USDA and DOE Fund Genomics Projects For Bioenergy Fuels Research |

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Department of Energy Genomics Projects For Bioenergy Fuels Research USDA and DOE Fund Genomics Projects For Bioenergy Fuels Research August 9, 2006 - 8:43am Addthis WASHINGTON, DC - Aug. 9, 2006 - Energy Secretary Samuel Bodman and Agriculture Secretary Mike Johanns today announced that the Department of Agriculture and the Department of Energy (DOE) have jointly awarded nine grants totaling $5.7 million for biobased fuels research that will accelerate the development of alternative fuel

  13. DOC-DOE Joint China Mission Statement | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Joint China Mission Statement DOC-DOE Joint China Mission Statement DOC-DOE Joint China Mission Statement DOC-DOE Joint China Mission Statement (109.75 KB) More Documents & Publications DOC-DOE China Mission Announcement Press Release FACT SHEET: U.S.-China Clean Energy Cooperation Announcements US-China Clean Energy Cooperation

  14. Joint DOE-Rosatom Statement

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Statement on the U.S. - Russian Excess Weapon-grade Plutonium Disposition Program The U.S. Department of Energy (DOE) and the Federal Atomic Energy Agency, Russian Federation (Rosatom), as the Executive Agents for the implementation of the 2000 Plutonium Management and Disposition Agreement, hereby reaffirm their commitment to implementing the 2000 Agreement and effective and transparent disposition of 34 metric tons each of weapon- grade plutonium designated as no longer required for defense

  15. Genomics Dan Rokhsar, DOE JGI/LBNL & UC Berkeley NERSC User Meeting

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    for Genomics Dan Rokhsar, DOE JGI/LBNL & UC Berkeley NERSC User Meeting 4 February 2014 Computing for Genomics * The DOE Joint Genome Institute - Who we are, what we do, and why * Two computational problems in genomics - "Assembling" genomes from "shotgun" sequence - "Annotating" "metagenomic" data 2 DOE JGI- A Genomics User Facility * In 1997, as part of the ramp-up for the human genome project, the DOE Office of Biological and Environmental Research

  16. 2012 U.S. Department of Energy: Joint Genome Institute: Progress Report

    SciTech Connect (OSTI)

    Gilbert, David

    2013-01-01

    The mission of the U.S. Department of Energy Joint Genome Institute (DOE JGI) is to serve the diverse scientific community as a user facility, enabling the application of large-scale genomics and analysis of plants, microbes, and communities of microbes to address the DOE mission goals in bioenergy and the environment. The DOE JGI's sequencing efforts fall under the Eukaryote Super Program, which includes the Plant and Fungal Genomics Programs; and the Prokaryote Super Program, which includes the Microbial Genomics and Metagenomics Programs. In 2012, several projects made news for their contributions to energy and environment research.

  17. History of the DOE Human Genome Program

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    of the DOE Human Genome Program The following history is taken from the U.S. Department of Energy 1991-91 Human Genome Program Report (June 1992). This is an archived item. A brief ...

  18. DOE-EERC jointly sponsored research program

    SciTech Connect (OSTI)

    Hendrikson, J.G.; Sondreal, E.A.

    1999-09-01

    U.S. Department of Energy (DOE) Cooperative Agreement DE-FC21-93MC30098 funded through the Office of Fossil Energy and administered at the Federal Energy Technology Center (FETC) supported the performance of a Jointly Sponsored Research Program (JSRP) at the Energy and Environmental Research Center (EERC) with a minimum 50% nonfederal cost share to assist industry in commercializing and effectively applying efficient, nonpolluting energy technologies that can compete effectively in meeting market demands for clean fuels, chemical feedstocks, and electricity in the 21st century. The objective of the JSRP was to advance the deployment of advanced technologies for improving energy efficiency and environmental performance through jointly sponsored research on topics that would not be adequately addressed by the private sector alone. Examples of such topics include the barriers to hot-gas cleaning impeding the deployment of high-efficiency power systems and the search for practical means for sequestering CO{sub 2} generated by fossil fuel combustion. The selection of particular research projects was guided by a combination of DOE priorities and market needs, as provided by the requirement for joint venture funding approved both by DOE and the private sector sponsor. The research addressed many different energy resource and related environmental problems, with emphasis directed toward the EERC's historic lead mission in low-rank coals (LRCs), which represent approximately half of the U.S. coal resources in the conterminous states, much larger potential resources in Alaska, and a major part of the energy base in the former U.S.S.R., East Central Europe, and the Pacific Rim. The Base and JSRP agreements were tailored to the growing awareness of critical environmental issues, including water supply and quality, air toxics (e.g., mercury), fine respirable particulate matter (PM{sub 2.5}), and the goal of zero net CO{sub 2} emissions.

  19. Introduction to Using NERSC for the Joint Genome Institute

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NERSC Introduction to Using NERSC for the Joint Genome Institute May 2, 2011 jgi logo sm NERSC Training Event 1:00-5:00 p.m. PDT May 2, 2011 Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA Introduction to Using NERSC Richard Gerber, NERSC User Services Group Shane Canon, NERSC Technology Integration Group This half-day training will enable new users from the Joint Genome Institute to get connected and running jobs at NERSC. We will cover NERSC computational and storage systems,

  20. DOE JGI Whole Genome Shotgun Sequencing, part 1

    ScienceCinema (OSTI)

    Miranda Harmon-Smith

    2010-09-01

    A Howard Hughes Medical Institute (HHMI) video production describing the Whole Genome Shotgun Sequencing process at the US Department of Energy's Joint Genome Institute (JGI).

  1. DOE JGI Whole Genome Shotgun Sequencing, part 3

    ScienceCinema (OSTI)

    Miranda Harmon-Smith

    2010-09-01

    A Howard Hughes Medical Institute (HHMI) video production describing the Whole Genome Shotgun Sequencing process at the US Department of Energy's Joint Genome Institute (JGI).

  2. DOE JGI Whole Genome Shotgun Sequencing, part 2

    ScienceCinema (OSTI)

    Miranda Harmon-Smith

    2010-09-01

    A Howard Hughes Medical Institute (HHMI) video production describing the Whole Genome Shotgun Sequencing process at the US Department of Energy's Joint Genome Institute (JGI).

  3. Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Underfoot | Department of Energy Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot August 13, 2012 - 2:33pm Addthis By developing a better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for them in times of drought. By developing a better understanding of the

  4. ORISE: Providing Support to the DOE Joint Information Center

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Joint Information Center (JIC) ORISE supports DOE's Oak Ridge Office by managing crisis communication facility for drills, exercises and emergencies In the event of an emergency,...

  5. Joint DOE-Rosatom Statement | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    DOE-Rosatom Statement Joint DOE-Rosatom Statement Joint DOE-Rosatom Statement (22.44 KB) More Documents & Publications Report on the Effect the Low Enriched Uranium Delivered Under the Highly Enriched Uranium Agreement Between the USA and the Russian Federation has on the Domestic Uranium Mining, Conversion, and Enrichment Industries and the Ops of the Gaseous Diffusion ISMS/EMS Lessons Learned Disposition Projects at SRS EIS-0283-S2: Final Supplemental Environmental Impact Statement

  6. Joint DOE-MSA News Release Media Contacts:

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    March 19, 2015 Joint DOE-MSA News Release Media Contacts: Cameron Hardy, DOE, (509) 376-5365, Cameron.Hardy@rl.doe.gov Rae Weil, Mission Support Alliance, (509) 376-6522, Rae_S_Weil@rl.gov DOE-NNSA, Washington to take part in regional exercise in Benton and Franklin Counties Training designed to enable responders to work together effectively during radiological emergencies Richland, Wash. - The U.S. Department of Energy's (DOE) National Nuclear Security Administration's (NNSA) Radiological

  7. DOE Science Showcase - Genomics | OSTI, US Dept of Energy Office...

    Office of Scientific and Technical Information (OSTI)

    Image Credit: Office of Biological and Environmental Research, U.S. DOE Office of Science. ... DOE's Genomic Science Program research is conducted at national laboratories and ...

  8. Introduction to Metagenomics at DOE JGI: Program Overview and Program Informatics (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    ScienceCinema (OSTI)

    Tringe, Susannah [DOE JGI

    2013-01-22

    Susannah Tringe of the DOE Joint Genome Institute talks about the Program Overview and Program Informatics at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011

  9. Joint DOE-MSA News Release Media Contacts:

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    October 22, 2014 Joint DOE-MSA News Release Media Contacts: Cameron Hardy, DOE, (509) 376-5365, Cameron.Hardy@rl.doe.gov Rae Weil, Mission Support Alliance, (509) 376-6522, Rae_S_Weil@rl.gov Workers Enter Cocooned F Reactor for Scheduled Inspection Inspection by DOE ensures reactors are safe, secure RICHLAND, Wash. - Workers from Mission Support Alliance, LLC., removed the welds around the steel door of the F Reactor last week before stepping inside the reactor to complete its periodic

  10. Human Genome Research: Decoding DNA

    Office of Scientific and Technical Information (OSTI)

    ... Speeding Up the Process of Gene Discovery Engineered Enzyme Accelerates DNA Sequencing Putting a Virus to Practical Use DOE Joint Genome Institute The Human Genome Project: ...

  11. The Genome Portal of the Department of Energy Joint Genome Institute

    SciTech Connect (OSTI)

    Nordberg, Henrik; Cantor, Michael; Dushekyo, Serge; Hua, Susan; Poliakov, Alexander; Smirnova, Tatyana; Dubchak, Inna

    2014-03-14

    The JGI Genome Portal (http://genome.jgi.doe.gov) provides unified access to all JGI genomic databases and analytical tools. A user can search, download and explore multiple data sets available for all DOE JGI sequencing projects including their status, assemblies and annotations of sequenced genomes. Genome Portal in the past 2 years was significantly updated, with a specific emphasis on efficient handling of the rapidly growing amount of diverse genomic data accumulated in JGI. A critical aspect of handling big data in genomics is the development of visualization and analysis tools that allow scientists to derive meaning from what are otherwise terrabases of inert sequence. An interactive visualization tool developed in the group allows us to explore contigs resulting from a single metagenome assembly. Implemented with modern web technologies that take advantage of the power of the computer's graphical processing unit (gpu), the tool allows the user to easily navigate over a 100,000 data points in multiple dimensions, among many biologically meaningful parameters of a dataset such as relative abundance, contig length, and G+C content.

  12. The Future of Microbial Genomics

    SciTech Connect (OSTI)

    Kyrpides, Nikos [Genome Biology group at the DOE Joint Genome Institute

    2010-06-02

    Nikos Kyrpides, head of the Genome Biology group at the DOE Joint Genome Institute discusses current challenges in the field of microbial genomics on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM

  13. Joint DOE/NRCan Study of North American Transportation Energy Futures: Phase 2 Results

    SciTech Connect (OSTI)

    None

    2009-01-18

    Joint DOE/NRCan Study of North American Transportation Energy Futures: Discussion of the Study, Presentation of Phase 2 Results - April 30, 2003

  14. EPRI-DOE Joint Report on Fossil Fleet Transition with Fuel Changes...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    and Large Scale Variable Renewable Integration Now Available EPRI-DOE Joint Report on Fossil Fleet Transition with Fuel Changes and Large Scale Variable Renewable Integration ...

  15. EPRI-DOE Joint Report Focuses on Fossil Fleet Transition with...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Changes and Large Scale Variable Renewable Integration EPRI-DOE Joint Report Focuses on Fossil Fleet Transition with Fuel Changes and Large Scale Variable Renewable Integration ...

  16. Sandia Energy - Joint Sandia-DOE-HMRC Testing of a Floating Oscillatin...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Oscillating Water Column Wave Energy Converter Device Home Renewable Energy Energy Water Power Partnership News News & Events Joint Sandia-DOE-HMRC Testing of a Floating...

  17. The Electrolyte Genome Project - Joint Center for Energy Storage Research

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Electrolyte Genome Project Traditional chemistry relies on intuition and experience to select a few materials that might work well for new electrolytes. The Electrolyte Genome streamlines this process by evaluating thousands of materials by simulation on the computer and choosing the most promising few for synthesis in the laboratory. Download Electrolyte Genome

  18. Materials Project and Electrolyte Genome - Joint Center for Energy Storage

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Research Materials Project and Electrolyte Genome The Materials Project and Electrolyte Genome are computer modeling tools designed to accelerate the discovery process before testing in the laboratory. Developing beyond-lithium-ion batteries requires the discovery of new working ions, cathodes, anodes, and electrolytes. The Materials Project and the Electrolyte Genome use high-throughput computer modeling to: identify new candidates for battery materials, predict their performance, and

  19. DOE Human Genome Program contractor-grantee workshop

    SciTech Connect (OSTI)

    1996-01-01

    This volume contains the proceedings for the DOE Human Genome Program`s Contractor-Grantee Workshop V held in Sante Fe, New Mexico January 28, February 1, 1996. Presentations were divided into sessions entitled Sequencing; Mapping; Informatics; Ethical, Legal, and Social Issues; and Infrastructure. Reports of individual projects described herein are separately indexed and abstracted for the database.

  20. DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint Environmental

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Research Projects to Advance Ocean Renewable Energy | Department of Energy DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint Environmental Research Projects to Advance Ocean Renewable Energy DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint Environmental Research Projects to Advance Ocean Renewable Energy October 26, 2010 - 12:00am Addthis WASHINGTON, DC - The Department of Energy (DOE), Bureau of Ocean Energy Management, Regulation and Enforcement (BOEMRE), and the

  1. DOE-NE Light Water Reactor Sustainability Program and EPRI Long Term Operations Program Joint Research and Development

    Broader source: Energy.gov [DOE]

    Description of Joint DOE and EPRI research and development programs related to reactor sustainability INL/EXT-12-24562

  2. 2013 Progress Report -- DOE Joint Genome Institute (Program Document...

    Office of Scientific and Technical Information (OSTI)

    Close Cite: Bibtex Format Close 0 pages in this document matching the terms "" Search For Terms: Enter terms in the toolbar above to search the full text of this document for ...

  3. Final Report: DOE award: ER64516-1031199-0013966 2007-2011 Genomic...

    Office of Scientific and Technical Information (OSTI)

    Technical Report: Final Report: DOE award: ER64516-1031199-0013966 2007-2011 Genomic ... Title: Final Report: DOE award: ER64516-1031199-0013966 2007-2011 Genomic Structure, ...

  4. JOINT EPA/DOE STATEMENT: Radiation Monitors Confirm That No Radiation

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Levels of Concern Have Reached the United States | Department of Energy JOINT EPA/DOE STATEMENT: Radiation Monitors Confirm That No Radiation Levels of Concern Have Reached the United States JOINT EPA/DOE STATEMENT: Radiation Monitors Confirm That No Radiation Levels of Concern Have Reached the United States March 18, 2011 - 12:00am Addthis WASHINGTON - The United States Government has an extensive network of radiation monitors around the country and no radiation levels of concern have been

  5. Realizing the Electrolyte Genome - Joint Center for Energy Storage Research

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    June 18, 2014, Research Highlights Realizing the Electrolyte Genome In silico screening and design of novel electrolyte compounds Research Details JCESR is building a highly sophisticated infrastructure for high-throughput evaluation of molecular properties. This involves coupling ab initio DFT methods with rapid classic molecular dynamics, calculations of redox potentials, and solvation structure while more detailed reactivity studies are carried out. Candidates that meet performance metrics

  6. DOE's effort to reduce truck aerodynamic drag through joint experiment...

    Office of Scientific and Technical Information (OSTI)

    Objectives are: (1) In support of DOE's mission, provide guidance to industry in the ... Resource Relation: Conference: Proposed for presentation at the Society of Automotive ...

  7. DOE, USDA, and NSF Launch Joint Climate Change Prediction Research...

    Office of Environmental Management (EM)

    William F. Brinkman, Director of DOE's Office of Science. "This research will help us better understand how much our climate is changing and what that will mean at both a global ...

  8. DOD/DOE NNSA Joint Munitions Program: 30 years of collaborative innovation

    National Nuclear Security Administration (NNSA)

    | National Nuclear Security Administration | (NNSA) DOD/DOE NNSA Joint Munitions Program: 30 years of collaborative innovation Tuesday, April 26, 2016 - 11:25am As part of NNSA's commitment to protecting and preserving the nation's nuclear deterrent, NNSA collaborates with the Department of Defense (DOD) in the Joint Munitions Program (JMP). This year marks more than 30 years of partnership through the JMP to improve and invest in innovative technology in pursuit of mutual long-term national

  9. DOE-EERE/NIST Joint Workshop on Combinatorial Materials Science for

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Applications in Energy | Department of Energy EERE/NIST Joint Workshop on Combinatorial Materials Science for Applications in Energy DOE-EERE/NIST Joint Workshop on Combinatorial Materials Science for Applications in Energy The Hydrogen Storage Subprogram of the U.S. Department of Energy co-hosted with the NIST (National Institute of Standards and Technology) Combinatorial Methods Center (NCMC) a workshop titled "High-Throughput/Combinatorial Material Science for Applications in

  10. DOE Announces Funding for U.S.-India Joint Clean Energy Research and

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Development Center | Department of Energy for U.S.-India Joint Clean Energy Research and Development Center DOE Announces Funding for U.S.-India Joint Clean Energy Research and Development Center May 16, 2011 - 12:00am Addthis Washington, D.C. - As part of the Partnership to Advance Clean Energy announced by President Obama and Prime Minister Singh of India last November, the Department of Energy has committed $25 million over the next five years to support the U.S.-India Joint Clean Energy

  11. Genome To Life Report | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Genome To Life Report Biological and Environmental Research Advisory Committee (BERAC) BERAC Home Meetings Members Charges/Reports Current BERAC Charges Archive of BERAC Reports Charter .pdf file (135KB) BER Committees of Visitors Federal Advisory Committees BER Home Charges/Reports Genome To Life Report Print Text Size: A A A FeedbackShare Page DOE Genomes to Life Program Information External link BRINGING THE GENOME TO LIFE - Energy Related Biology in the New Genomic World - A New Research

  12. Joint DOE-CH2M News Release Media Contact: For Immediate Release:

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Joint DOE-CH2M News Release Media Contact: For Immediate Release: Destry Henderson, CH2M, (509) 376-8644, April 20, 2015 destry_j_henderson@rl.gov Mark Heeter, DOE, (509)373-1970, mark.heeter@rl.doe.gov WORKERS REMOVE LAST PENCIL TANK FROM KEY AREA OF HANFORD'S PLUTONIUM FINISHING PLANT Removal of contaminated pencil tanks brings facility one step closer toward demolition RICHLAND, Wash. - More than 50 pencil tank assemblies - some two stories tall - contaminated with chemical and radiological

  13. USDA and DOE to Coordinate Research of Plant and Microbial Genomics |

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Department of Energy to Coordinate Research of Plant and Microbial Genomics USDA and DOE to Coordinate Research of Plant and Microbial Genomics January 17, 2006 - 10:39am Addthis -- Soybean DNA to be Decoded -- WASHINGTON - The U.S. Departments of Agriculture and Energy announced Monday they will share resources and coordinate the study of plant and microbial genomics, and the Department of Energy will tackle the sequencing of the soybean genome as the first project resulting from the

  14. DOE Science Showcase - Genomics | OSTI, US Dept of Energy Office of

    Office of Scientific and Technical Information (OSTI)

    Scientific and Technical Information Genomics "DNA with Features," Image Credit: Office of Biological and Environmental Research, U.S. DOE Office of Science. Genomics is a scientific field focused on sequencing and analyzing genomes, the complete set of genetic material encoding the biological instructions for developing and maintaining an organism. Insights from genomic information are catalyzing an extraordinary transformation in our understanding of biological systems and how we

  15. Genomics of wood-degrading fungi (Journal Article) | DOE PAGES

    Office of Scientific and Technical Information (OSTI)

    Genomics of wood-degrading fungi Prev Next Title: Genomics of wood-degrading fungi Authors: Ohm, Robin A. ; Riley, Robert ; Salamov, Asaf ; Min, Byoungnam ; Choi, In-Geol ; ...

  16. DOE human genome program contractor-grantee workshop VI

    SciTech Connect (OSTI)

    1997-10-01

    Research is presented from the workshop on the Human Genome Project. Topics include sequencing, genetic mapping, informatics, ethical and legal issues, and infrastructure.

  17. DOE Systems Biology Knowledgebase (KBASE) (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Arkin, Adam [LBNL

    2013-01-15

    Adam Arkin from Berkeley Lab on the DOE Systems Biology Knowledgebase (KBASE) at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

  18. DOE Systems Biology Knowledgebase (KBASE) (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Arkin, Adam [LBNL] [LBNL

    2012-03-21

    Adam Arkin from Berkeley Lab on the DOE Systems Biology Knowledgebase (KBASE) at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

  19. Phytozome Comparative Plant Genomics Portal

    SciTech Connect (OSTI)

    Goodstein, David; Batra, Sajeev; Carlson, Joseph; Hayes, Richard; Phillips, Jeremy; Shu, Shengqiang; Schmutz, Jeremy; Rokhsar, Daniel

    2014-09-09

    The Dept. of Energy Joint Genome Institute is a genomics user facility supporting DOE mission science in the areas of Bioenergy, Carbon Cycling, and Biogeochemistry. The Plant Program at the JGI applies genomic, analytical, computational and informatics platforms and methods to: 1. Understand and accelerate the improvement (domestication) of bioenergy crops 2. Characterize and moderate plant response to climate change 3. Use comparative genomics to identify constrained elements and infer gene function 4. Build high quality genomic resource platforms of JGI Plant Flagship genomes for functional and experimental work 5. Expand functional genomic resources for Plant Flagship genomes

  20. From Human Genome to Materials "Genome" | U.S. DOE Office of Science

    Office of Science (SC) Website

    (SC) From Human Genome to Materials "Genome" News News Home Featured Articles 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 Science Headlines Science Highlights Presentations & Testimony News Archives Communications and Public Affairs Contact Information Office of Science U.S. Department of Energy 1000 Independence Ave., SW Washington, DC 20585 P: (202) 586-5430 07.09.14 From Human Genome to Materials "Genome" Government initiative seeks to speed the

  1. Accelerating Biofuel Feedstock Crop Improvement with Miscanthus Genomics (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Swaminathan, Kankshita

    2014-03-20

    Kankshita Swaminathan of the Energy Biosciences Institute speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  2. Cassava Genomics: can genomic technology benefit smallholder farmers in Africa? (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Rounsley, Steve

    2014-03-20

    Steve Rounsley of the University of Arizona speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  3. DOE Systems Biology Knowledgebase: KBase (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Arkin, Adam

    2014-03-20

    Adam Arkin from LBNL speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  4. Improving biofuel feedstocks by modifying xylan biosynthesis (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Lau, Jane

    2013-03-01

    Jane Lau of the Joint BioEnergy Institute on "Improving biofuel feedstocks by modifying xylan biosynthesis" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

  5. JOINT EPA/DOE STATEMENT: Radiation Monitors Confirm That No Radiation...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    JOINT EPADOE STATEMENT: Radiation Monitors Confirm That No Radiation Levels of Concern Have Reached the United States JOINT EPADOE STATEMENT: Radiation Monitors Confirm That No ...

  6. The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Huntemann, Marcel; Ivanova, Natalia N.; Mavromatis, Konstantinos; Tripp, H. James; Paez-Espino, David; Palaniappan, Krishnaveni; Szeto, Ernest; Pillay, Manoj; Chen, I-Min A.; Pati, Amrita; et al

    2015-10-26

    The DOE-JGI Microbial Genome Annotation Pipeline performs structural and functional annotation of microbial genomes that are further included into the Integrated Microbial Genome comparative analysis system. MGAP is applied to assembled nucleotide sequence datasets that are provided via the IMG submission site. Dataset submission for annotation first requires project and associated metadata description in GOLD. The MGAP sequence data processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNA features, as well as CRISPR elements. In conclusion, structural annotation is followed by assignment of protein product names and functions.

  7. Joint Center for Artificial Photosynthesis (JCAP): DOE's Solar Fuels Energy Innovation Hub (2011 EFRC Summit)

    ScienceCinema (OSTI)

    Lewis, Nate (Director, Joint Center for Artificial Photosynthesis and Professor at Caltech)

    2012-03-14

    The Joint Center for Artificial Photosynthesis (JCAP) is a DOE Energy Innovation Hub focused on fuels from sunlight. JCAP's Director, Nate Lewis, spoke at the 2011 EFRC Summit about what JCAP is and how it is partnering with the EFRC community to accelerate the progress towards new solar fuels. The 2011 EFRC Summit and Forum brought together the EFRC community and science and policy leaders from universities, national laboratories, industry and government to discuss "Science for our Nation's Energy Future." In August 2009, the Office of Science established 46 Energy Frontier Research Centers. The EFRCs are collaborative research efforts intended to accelerate high-risk, high-reward fundamental research, the scientific basis for transformative energy technologies of the future. These Centers involve universities, national laboratories, nonprofit organizations, and for-profit firms, singly or in partnerships, selected by scientific peer review. They are funded at $2 to $5 million per year for a total planned DOE commitment of $777 million over the initial five-year award period, pending Congressional appropriations. These integrated, multi-investigator Centers are conducting fundamental research focusing on one or more of several ?grand challenges? and use-inspired ?basic research needs? recently identified in major strategic planning efforts by the scientific community. The purpose of the EFRCs is to integrate the talents and expertise of leading scientists in a setting designed to accelerate research that transforms the future of energy and the environment.

  8. Information on a Major New Initiative: Mapping and Sequencing the Human Genome (1986 DOE Memorandum)

    SciTech Connect (OSTI)

    DeLisi, Charles

    1986-05-06

    In the history of the Human Genome Program, Dr. Charles DeLisi and Dr. Alvin Trivelpiece of the Department of Energy (DOE) were instrumental in moving the seeds of the program forward. This May 1986 memo from DeLisi to Trivelpiece, director of DOE's Office of Energy Research, documents this fact. Following the March 1986 Santa Fe workshop on the subject of mapping and sequencing the human genome, Delisi's memo outlines workshop conclusions, explains the relevance of this project to DOE and the importance of the Department's laboratories and capabilities, notes the critical experience of DOE in managing projects of this scale and potential magnitude, and recognizes the fact that the project will impact biomedical science in ways which could not be fully anticipated at the time. Subsequently, program guidance was further sought from the DOE Health Effects Research Advisory Committee (HERAC) and the April 1987 HERAC report recommmended that DOE and the nation commit to a large, multidisciplinary, scientific and technological undertaking to map and sequence the human genome.

  9. JGI Fungal Genomics Program

    SciTech Connect (OSTI)

    Grigoriev, Igor V.

    2011-03-14

    Genomes of energy and environment fungi are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 50 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such 'parts' suggested by comparative genomics and functional analysis in these areas are presented here

  10. Genomic Encyclopedia of Fungi

    SciTech Connect (OSTI)

    Grigoriev, Igor

    2012-08-10

    Genomes of fungi relevant to energy and environment are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 150 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such parts suggested by comparative genomics and functional analysis in these areas are presented here.

  11. Structural Biology | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Structural Biology Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Bioimaging Technology DOE Joint Genome Institute Structural Biology Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Climate and Environmental Sciences Division (CESD) Research Abstracts Searchable Archive of BER Highlights External link

  12. DOE Joint BioEnergy Institute Joins Elite '100/500 Club'

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Innovation and Solutions | Department of Energy Jobs Online (Hiring Manager), Office of Human Capitol Management Innovation and Solutions DOE Jobs Online (Hiring Manager), Office of Human Capitol Management Innovation and Solutions DOE Jobs Online (Hiring Manager), Office of Human Capitol Management Innovation and Solutions DOE Jobs Online (Hiring Manager), Office of Human Capitol Management Innovation and Solutions (1.46 MB) More Documents & Publications PIA - GovTrip (DOE data) LM

  13. Low Dose Radiation | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Radiobiology: Low Dose Radiation Research Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Bioimaging Technology DOE Joint Genome Institute Structural Biology Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Climate and Environmental Sciences Division (CESD) Research Abstracts Searchable Archive of BER Highlights

  14. DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint Environmenta...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Addthis WASHINGTON, DC - The Department of Energy (DOE), Bureau of Ocean Energy Management, Regulation and Enforcement (BOEMRE), and the Department of Commerce's National Oceanic ...

  15. Genomics of Climate Resilience (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Bermingham, Eldredge

    2013-03-27

    Eldredge Bermingham of the Smithsonian Tropical Research Institute-Panama on "Genomics of climate resilience" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  16. Genome Analyses and Supplement Data from the International Populus Genome Consortium (IPGC)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    International Populus Genome Consortium (IPGC)

    The sequencing of the first tree genome, that of Populus, was a project initiated by the Office of Biological and Environmental Research in DOEs Office of Science. The International Populus Genome Consortium (IPGC) was formed to help develop and guide post-sequence activities. The IPGC website, hosted at the Oak Ridge National Laboratory, provides draft sequence data as it is made available from DOE Joint Genome Institute, genome analyses for Populus, lists of related publications and resources, and the science plan. The data are available at http://www.ornl.gov/sci/ipgc/ssr_resource.htm.

  17. A GSC Global Genome Census (GSC8 Meeting)

    ScienceCinema (OSTI)

    Kyrpides, Nikos [DOE JGI

    2011-04-29

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Nikos Kyrpides of the DOE Joint Genome Institute discusses the notion of a global genome census at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

  18. First joint SPE/DOE symposium on enhanced oil recovery, proceedings supplement

    SciTech Connect (OSTI)

    1980-01-01

    The First Joint Symposium on Enhanced Oil Recovery sponsored by the Society of Petroleum Engineers and the US Department of Energy was held in Tulsa, Oklahoma. Besides the thirty-three technical papers which covered all phases of enhanced oil recovery and were published in the Proceedings, the Symposium included a session on Enhanced Oil Recovery Incentives where ten papers were presented which discussed the status of enhanced oil recovery technology, and included papers on incentive programs of the United States, Canada and Venezuela. These papers are published in this Proceedings Supplement under the following titles: Federal Government Role in enhanced Oil Recovery; Financial Realities of an Adequate Petroleum Supply; Major Technology Constraints in Enhanced Oil Recovery; Decontrol-Opportunities and Dangers; Status of EOR Technology; Impact of Federal Incentives on US Production; Canadian Incentives Program; and Heavy Oil Incentives in Venezuela.

  19. Joint Facilities User Forum on Data Intensive Computing Lessons Learned

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    User Forum on Data Intensive Computing Lessons Learned - NERSC/JGI Partnership Kjiersten Fagnan, NERSC User Services/JGI --- 1 --- June 1 7, 2 013 Outline * Overview o f N ERSC/JGI P artnership - DOE J GI b ackground - Team o verview - Compute r esources * CompuBng S trategic P lan - JGI G oals - NERSC G oals * Lessons Learned --- 2 --- DOE Joint Genome Institute 3 DOE JGI, Serving as a genomic user facility in support of the DOE missions: * Walnut Creek, CA facility opened in 1999 * 250

  20. DOE Human Genome Program: Contractor-Grantee Workshop IV, November 13--17, 1994, Santa Fe, New Mexico

    SciTech Connect (OSTI)

    Not Available

    1994-10-01

    This volume contains the proceedings of the fourth Contractor-Grantee Workshop for the Department of Energy (DOE) Human Genome Program. Of the 204 abstracts in this book, some 200 describe the genome research of DOE-funded grantees and contractors located at the multidisciplinary centers at Lawrence Berkeley Laboratory, Lawrence Livermore National Laboratory, and Los Alamos National Laboratory; other DOE-supported laboratories; and more than 54 universities, research organizations, and companies in the United States and abroad. Included are 16 abstracts from ongoing projects in the Ethical, Legal, and Social Issues (ELSI) component, an area that continues to attract considerable attention from a wide variety of interested parties. Three abstracts summarize work in the new Microbial Genome Initiative launched this year by the Office of Health and Environmental Research (OHER) to provide genome sequence and mapping data on industrially important microorganisms and those that live under extreme conditions. Many of the projects will be discussed at plenary sessions held throughout the workshop, and all are represented in the poster sessions.

  1. Joint Genome Institute (JGI)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    data (Rumen HiSeq dataset). Investigators: Edward Rubin, Victor Markowitz, Shane Canon, Jeremy Brand, (LBNL) More Information: See the JGI web site Last edited: 2012-04-12...

  2. USDA-DOE Make Available $4 Million for Biomass Genomics Research...

    Office of Science (SC) Website

    ... Information about the joint research program, the current ... is available at http:genomicsgtl.energy.govresearchDOEUSDA. ... and well-being, and communities by supporting research, ...

  3. Genetic Control of Mosquitoes (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Matzen, Kelly

    2014-03-19

    Kelly Matzen of OXITEC speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  4. Defining Genome Project Standards in a New Era of Sequencing (GSC8 Meeting)

    ScienceCinema (OSTI)

    Chain, Patrick [DOE JGI

    2011-04-28

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego.

  5. Synthetic Metagenomics: Converting digital information back to Biology (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Deutsch, Sam [DOE Joint Genome Institute

    2013-03-01

    Sam Deutsch of the DOE JGI on "Synthetic Metagenomics: Converting digital information back to Biology" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

  6. Metagenome Assembly at the DOE JGI (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    ScienceCinema (OSTI)

    Chain, Patrick [DOE JGI at LANL

    2013-01-22

    Patrick Chain of DOE JGI at LANL, Co-Chair of the Metagenome-specific Assembly session, on "Metagenome Assembly at the DOE JGI" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  7. Genome Analyses and Supplement Data from the International Populus Genome Consortium (IPGC)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    International Populus Genome Consortium (IPGC)

    The sequencing of the first tree genome, that of Populus, was a project initiated by the Office of Biological and Environmental Research in DOE’s Office of Science. The International Populus Genome Consortium (IPGC) was formed to help develop and guide post-sequence activities. The IPGC website, hosted at the Oak Ridge National Laboratory, provides draft sequence data as it is made available from DOE Joint Genome Institute, genome analyses for Populus, lists of related publications and resources, and the science plan. The data are available at http://www.ornl.gov/sci/ipgc/ssr_resource.htm.

  8. DOE and FERC Jointly Submit Implementation Proposal for The National Action Plan on Demand Response to Congress

    Office of Energy Efficiency and Renewable Energy (EERE)

    The U.S. Department of Energy and the Federal Energy Regulatory Commission (FERC) jointly submitted to Congress a required “Implementation Proposal for The National Action Plan on Demand Response.”

  9. EPRI-DOE Joint Report on Fossil Fleet Transition with Fuel Changes and Large Scale Variable Renewable Integration Now Available

    Broader source: Energy.gov [DOE]

    A new report “Fossil Fleet Transition with Fuel Changes and Large Scale Variable Renewable Integration” from the Electric Power Research Institute (EPRI) and jointly funded by the Offices of...

  10. Opening Remarks from the Joint Genome Institute and Argonne Lab High Performance Computing Workshop (2010 JGI/ANL HPC Workshop)

    ScienceCinema (OSTI)

    Rubin, Eddy

    2011-06-03

    DOE JGI Director Eddy Rubin gives opening remarks at the JGI/Argonne High Performance Computing (HPC) Workshop on January 25, 2010.

  11. Opening Remarks from the Joint Genome Institute and Argonne Lab High Performance Computing Workshop (2010 JGI/ANL HPC Workshop)

    SciTech Connect (OSTI)

    Rubin, Eddy

    2010-01-25

    DOE JGI Director Eddy Rubin gives opening remarks at the JGI/Argonne High Performance Computing (HPC) Workshop on January 25, 2010.

  12. USDA-DOE Make Available $4 Million for Biomass Genomics Research...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    the existing knowledge base of plant biology to enable researchers to confidently ... advance technology in support of DOE's missions in biology, medicine and the environment. ...

  13. Genome Improvement at JGI-HAGSC

    SciTech Connect (OSTI)

    Grimwood, Jane; Schmutz, Jeremy J.; Myers, Richard M.

    2012-03-03

    Since the completion of the sequencing of the human genome, the Joint Genome Institute (JGI) has rapidly expanded its scientific goals in several DOE mission-relevant areas. At the JGI-HAGSC, we have kept pace with this rapid expansion of projects with our focus on assessing, assembling, improving and finishing eukaryotic whole genome shotgun (WGS) projects for which the shotgun sequence is generated at the Production Genomic Facility (JGI-PGF). We follow this by combining the draft WGS with genomic resources generated at JGI-HAGSC or in collaborator laboratories (including BAC end sequences, genetic maps and FLcDNA sequences) to produce an improved draft sequence. For eukaryotic genomes important to the DOE mission, we then add further information from directed experiments to produce reference genomic sequences that are publicly available for any scientific researcher. Also, we have continued our program for producing BAC-based finished sequence, both for adding information to JGI genome projects and for small BAC-based sequencing projects proposed through any of the JGI sequencing programs. We have now built our computational expertise in WGS assembly and analysis and have moved eukaryotic genome assembly from the JGI-PGF to JGI-HAGSC. We have concentrated our assembly development work on large plant genomes and complex fungal and algal genomes.

  14. Genome Databases Get Faster, Bigger, Stronger | U.S. DOE Office of Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    (SC) Genome Databases Get Faster, Bigger, Stronger Biological and Environmental Research (BER) BER Home About Research Facilities Science Highlights Searchable Archive of BER Highlights External link Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) Community Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301)

  15. DOE

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    O 580 .1 A Admin Chg 1 3 10-23 2012 U.S. Department of Energyadmin change DOE O XXX.XWashington, D.C. DOE O XXX.X Chg X: XX-XX-XXXX SUBJECT: ADMINISTRATIVE CHANGE TO DOE O XXX.X, TITLE (IN ITALICS) EXPLANATION OF CHANGES. [This information can be copied from the Approval Memo] LOCATIONS OF CHANGES: Page Paragraph Changed To [Original text that was changed] [Revised text]

  16. MycoCosm portal: gearing up for 1000 fungal genomes

    SciTech Connect (OSTI)

    Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet; Kuo, Alan; Ohm, Robin; Riley, Robert; Salamov, Asaf; Zhao, Xueling; Korzeniewski, Frank; Smirnova, Tatyana; Nordberg, Henrik; Dubchak, Inna; Shabalov, Igor

    2013-10-09

    MycoCosm is a fungal genomics portal (http://jgi.doe.gov/fungi), developed by the US Department of Energy Joint Genome Institute to support integration, analysis and dissemination of fungal genome sequences and other omics data by providing interactive web-based tools. MycoCosm also promotes and facilitates user community participation through the nomination of new species of fungi for sequencing, and the annotation and analysis of resulting data. By efficiently filling gaps in the Fungal Tree of Life, MycoCosm will help address important problems associated with energy and the environment, taking advantage of growing fungal genomics resources.

  17. The Challenges and Opportunities for Extending Plant Genomics to Climate (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Weston, David

    2013-03-01

    David Weston of Oak Ridge National Laboratory on "The challenges and opportunities for extending plant genomics to climate" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  18. New Approaches and Technologies to Sequence de novo Plant reference Genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Schmutz, Jeremy [HudsonAlpha Institute

    2013-03-01

    Jeremy Schmutz of the HudsonAlpha Institute for Biotechnology on "New approaches and technologies to sequence de novo plant reference genomes" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  19. Uncovering Transcriptional Circuits in Arabidoposis by Functional Genomics (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Pruneda-Paz, Jose

    2013-03-01

    Jose Pruneda-Paz of UC San Diego on "Uncovering Transcriptional Circuits in Arabidopsis by Functional Genomics" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

  20. Algal Functional Annotation Tool from the DOE-UCLA Institute for Genomics and Proteomics

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Lopez, David

    The Algal Functional Annotation Tool is a bioinformatics resource to visualize pathway maps, identify enriched biological terms, or convert gene identifiers to elucidate biological function in silico. These types of analysis have been catered to support lists of gene identifiers, such as those coming from transcriptome gene expression analysis. By analyzing the functional annotation of an interesting set of genes, common biological motifs may be elucidated and a first-pass analysis can point further research in the right direction. Currently, the following databases have been parsed, processed, and added to the tool: 1( Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathways Database, 2) MetaCyc Encyclopedia of Metabolic Pathways, 3) Panther Pathways Database, 4) Reactome Pathways Database, 5) Gene Ontology, 6) MapMan Ontology, 7) KOG (Eukaryotic Clusters of Orthologous Groups), 5)Pfam, 6) InterPro.

  1. Whole Genome Sequencing of Rice Mutants to identify Genes Controlling Cell Wall Saccharification and Response to Biotic Stress (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Ronald, Pamela

    2014-03-20

    Pamela Ronald of the University of California Davis speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  2. DOE-NE Light Water Reactor Sustainability Program and EPRI Long-Term Operations Program. Joint Research and Development Plan

    SciTech Connect (OSTI)

    Williams, Don

    2014-04-01

    Nuclear power has contributed almost 20% of the total amount of electricity generated in the United States over the past two decades. High capacity factors and low operating costs make nuclear power plants (NPPs) some of the most economical power generators available. Further, nuclear power remains the single largest contributor (nearly 70%) of non-greenhouse gas-emitting electric power generation in the United States. Even when major refurbishments are performed to extend operating life, these plants continue to represent cost-effective, low-carbon assets to the nation’s electrical generation capability. By the end of 2014, about one-third of the existing domestic fleet will have passed their 40th anniversary of power operations, and about one-half of the fleet will reach the same 40-year mark within this decade. Recognizing the challenges associated with pursuing extended service life of commercial nuclear power plants, the U.S. Department of Energy’s (DOE) Office of Nuclear Energy (NE) and the Electric Power Research Institute (EPRI) have established separate but complementary research and development programs (DOE-NE’s Light Water Reactor Sustainability [LWRS] Program and EPRI’s Long-Term Operations [LTO] Program) to address these challenges. To ensure that a proper linkage is maintained between the programs, DOE-NE and EPRI executed a memorandum of understanding in late 2010 to “establish guiding principles under which research activities (between LWRS and LTO) could be coordinated to the benefit of both parties.” This document represents the third annual revision to the initial version (March 2011) of the plan as called for in the memorandum of understanding.

  3. Genomics of Extinct and Endangered Species (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Shuster, Stephen [Penn State University

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Stephen Shuster of Penn State University gives a presentation on "Genomics of Extinct and Endangered Species" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  4. Genomic Speciation and Adaptation in Aquilegia (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Hodges, Scott [University of California, Santa Barbara] [University of California, Santa Barbara

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Scott Hodges of the University of California, Santa Barbara gives a presentation on "Genomic Speciation and Adaptation in Aquilegia" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  5. Genomics of Extinct and Endangered Species (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Shuster, Stephen [Penn State University] [Penn State University

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Stephen Shuster of Penn State University gives a presentation on "Genomics of Extinct and Endangered Species" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  6. Genomic Speciation and Adaptation in Aquilegia (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Hodges, Scott [University of California, Santa Barbara

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Scott Hodges of the University of California, Santa Barbara gives a presentation on "Genomic Speciation and Adaptation in Aquilegia" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  7. Introduction to Metagenomics at DOE JGI (Opening Remarks for the Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    ScienceCinema (OSTI)

    Kyrpides, Nikos [DOE JGI

    2013-01-22

    After a quick introduction by DOE JGI Director Eddy Rubin, DOE JGI's Nikos Kyrpides delivers the opening remarks at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011

  8. Genomics Encyclopedia of Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB): a resource for microsymbiont genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Reeve, Wayne

    2013-03-01

    Wayne Reeve of Murdoch University on "Genomics Encyclopedia of Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB): a resource for microsymbiont genomes" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  9. Development of High-Throughput Screens to Target SAM-I Riboswitches (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Hickey, Scott

    2014-03-19

    Scott Hickey of the University of California Berkeley speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  10. Metagenomic and Metaproteomic Analyses of Symbioses between Bacteria and Gutless Marine Worms (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Dubilier, Nicole

    2014-03-19

    Nicole Dubilier of the Max Planck Institute speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  11. Mapping the Topology of the Human Genome

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Mapping the Topology of the Human Genome Mapping the Topology of the Human Genome Print Monday, 11 July 2016 00:00 Department of Energy facilities such as the Joint Genome ...

  12. Strange Tails: Viral Discovery and Deep Sequencing (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    DeRisi, Joe

    2013-03-01

    Joe DeRisi of UC San Francisco on "Strange Tails: Viral discovery & deep sequencing" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  13. Part Mining for Synthetic Biology (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Voigt, Chris [MIT

    2013-03-01

    Chris Voigt from MIT delivers the opening keynote on "Part Mining for Synthetic Biology" at the 8th Annual Genomics of Energy & Environment Meeting on March 26, 2013 in Walnut Creek, Calif.

  14. Synthetic Biology and Bioenergy: Helping the Good Guy and Stopping the Bad (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Mercedes-Roca, Maria [Zamorano Panamerican Agriculture School

    2014-03-19

    Maria Mercedes-Roca of the Zamorano Panamerican Agriculture School speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  15. Regulation of Flowering in Brachypodium distachyon (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Amasino, Rick [University of Wisconsin

    2013-03-01

    Rick Amasino of the University of Wisconsin on "Regulation of Flowering in Brachypodium distachyon" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  16. PMI: Plant-Microbe Interfaces (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Schadt, Christopher [ORNL

    2013-03-01

    Christopher Schadt of Oak Ridge National Laboratory on "Plant-Microbe Interactions" in the context of poplar trees at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 held in Walnut Creek, Calif.

  17. Joint USDA/DOE meeting

    SciTech Connect (OSTI)

    Not Available

    1994-07-01

    This documents contains the details from the USDA/USDOE meeting on April 11--12, 1994. Topics discussed include: genetic research, environmental research, renewable energy sources, food supply, improved fertilizers, new pesticides, research programs combining the efforts of the two agencies to develop new products for use in the agriculture industry, environmentally safe products, getting more with less money, and various other subjects dealing with how cooperation among these agencies can improve the agriculture industry.

  18. Fueling Future with Algal Genomics (Conference) | SciTech Connect

    Office of Scientific and Technical Information (OSTI)

    carbon cycle, and are prominent candidates for biofuel production. The US Department of Energy Joint Genome Institute (JGI) is leading the world in algal genome sequencing...

  19. Exploiting the genome

    SciTech Connect (OSTI)

    Block, S.; Cornwall, J.; Dyson, F.; Koonin, S.; Lewis, N.; Schwitters, R.

    1998-09-11

    In 1997, JASON conducted a DOE-sponsored study of the human genome project with special emphasis on the areas of technology, quality assurance and quality control, and informatics. The present study has two aims: first, to update the 1997 Report in light of recent developments in genome sequencing technology, and second, to consider possible roles for the DOE in the ''post-genomic" era, following acquisition of the complete human genome sequence.

  20. ZipperDB: Predictions of Fibril-forming Segments within Proteins Identified by the 3D Profile Method (from the UCLA-DOE Institute for Genomics and Proteomics)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Goldschmidt, L.; Teng, P. K.; Riek, R.; Eisenberg, D.

    ZipperDB contains predictions of fibril-forming segments within proteins identified by the 3D Profile Method. The UCLA-DOE Institute for Genomics and Proteomics has analyzed over 20,000 putative protein sequences for segments with high fibrillation propensity that could form a "steric zipper"ùtwo self-complementary beta sheets, giving rise to the spine of an amyloid fibril. The approach is unique in that structural information is used to evaluate the likelihood that a particular sequence can form fibrils. [copied with edits from http://www.doe-mbi.ucla.edu/]. In addition to searching the database, academic and non-profit users may also submit their protein sequences to the database.

  1. ZipperDB: Predictions of Fibril-forming Segments within Proteins Identified by the 3D Profile Method (from the UCLA-DOE Institute for Genomics and Proteomics)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Goldschmidt, L.; Teng, P. K.; Riek, R.; Eisenberg, D.

    ZipperDB contains predictions of fibril-forming segments within proteins identified by the 3D Profile Method. The UCLA-DOE Institute for Genomics and Proteomics has analyzed over 20,000 putative protein sequences for segments with high fibrillation propensity that could form a "steric zipper"two self-complementary beta sheets, giving rise to the spine of an amyloid fibril. The approach is unique in that structural information is used to evaluate the likelihood that a particular sequence can form fibrils. [copied with edits from http://www.doe-mbi.ucla.edu/]. In addition to searching the database, academic and non-profit users may also submit their protein sequences to the database.

  2. Genomic and Systems Biology Analyses of Social Behavior or Evolutionary Genomic Analyses of Insect Society: Eat, Drink, and Be Scary (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Robinson, Gene

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gene Robinson of the University of Illinois on "Genomic and Systems Biology Analyses of Social Behavior" at the 6th Annual Genomics of Energy & Environment Meeting on March 23, 2011

  3. Genomic and Systems Biology Analyses of Social Behavior or Evolutionary Genomic Analyses of Insect Society: Eat, Drink, and Be Scary (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Robinson, Gene

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gene Robinson of the University of Illinois on "Genomic and Systems Biology Analyses of Social Behavior" at the 6th Annual Genomics of Energy & Environment Meeting on March 23, 2011

  4. OSTIblog Articles in the Human Genome Project Topic | OSTI, US...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Related Topics: Charles DeLisi, DNA, DOE Research & Development (R&D) Accomplishments, genomics, Human Genome Project, Santa Fe Workshop, sequencing Read more... DOE Research ...

  5. 10-Year Strategic Vision: Forging the Future of the DOE JGI

    SciTech Connect (OSTI)

    2012-09-01

    Dramatic technological advances in genomics continue to transform modern biology. The DOE Joint Genome Institute (DOE JGI) has been at the leading edge of large-scale sequence-based science from its inception. Presently our ability to generate genomic data greatly outpaces our capacity to convert these data into biological insights. Bridging the gap between a sequenced genome and understanding of organism-scale functions is a significant unsolved problem in modern biology. Consequently, as the DOE JGI plans for its future, a major objective is to couple the generation of sequence data with the development of new large-scale experimental and computational capabilities to functionally annotate DNA sequences, thereby narrowing the gap between generation and interpretation of sequence data.

  6. Joint BioEnergy Institute (Other) | SciTech Connect

    Office of Scientific and Technical Information (OSTI)

    JOINT BIOENERGY INSTITUTE; JBEI; GENOMICS; SYSTEMS BIOLOGY; SUGAR; FUEL SYNTHESIS; SWITCH GRASS Word Cloud More Like This Multimedia File size NAView Multimedia View Multimedia

  7. Complete genome sequence of Arthrobacter sp. strain FB24

    SciTech Connect (OSTI)

    Nakatsu, C. H.; Barabote, Ravi; Thompson, Sue; Bruce, David; Detter, Chris; Brettin, T.; Han, Cliff F.; Beasley, Federico; Chen, Weimin; Konopka, Allan; Xie, Gary

    2013-09-30

    Arthrobacter sp. strain FB24 is a species in the genus Arthrobacter Conn and Dimmick 1947, in the family Micrococcaceae and class Actinobacteria. A number of Arthrobacter genome sequences have been completed because of their important role in soil, especially bioremediation. This isolate is of special interest because it is tolerant to multiple metals and it is extremely resistant to elevated concentrations of chromate. The genome consists of a 4,698,945 bp circular chromosome and three plasmids (96,488, 115,507, and 159,536 bp, a total of 5,070,478 bp), coding 4,536 proteins of which 1,257 are without known function. This genome was sequenced as part of the DOE Joint Genome Institute Program.

  8. The Genomes and Metagenomes (GEM) Catalogue (first presentation) and The ISA-GCDML Workshop (second presentation) (GSC8 Meeting)

    ScienceCinema (OSTI)

    Field, Dawn [NERC Centre for Ecology and Hydrology]; Sansone, Susanna [EBI

    2011-04-29

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding ''Research Coordination Network'' from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Dawn Field of the NERC Centre for Ecology & Hydrology briefly introduces the GEM Catalogue, followed by Susanna Sansone of the European Bioinformatics Institute who talks about the ISA-GCDML workshop at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

  9. Ceramic joints

    DOE Patents [OSTI]

    Miller, Bradley J.; Patten, Jr., Donald O.

    1991-01-01

    Butt joints between materials having different coefficients of thermal expansion are prepared having a reduced probability of failure of stress facture. This is accomplished by narrowing/tapering the material having the lower coefficient of thermal expansion in a direction away from the joint interface and not joining the narrow-tapered surface to the material having the higher coefficient of thermal expansion.

  10. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology Genomics and Systems Biology Los Alamos scientists perform research in functional genomics and structural genomics, and applications for such work cover diverse fields such as energy, agriculture, and environmental cleanup. Contact Us Babetta Marrone Biofuels Program Manager Email Cheryl Kuske DOE BER Biological System Science Division Program Manager Email Kirsten McCabe Emerging Threats Program Manager Email Rebecca McDonald Bioscience Communications Email "We

  11. Association Genetics of Populus trichocarpa or Resequencing in Populus: Towards Genome Wide Association Genetics (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Tuskan, Gerry

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gerry Tuskan of Oak Ridge National Laboratory on "Resequencing in Populus: Towards Genome Wide Association Genetics" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  12. Association Genetics of Populus trichocarpa or Resequencing in Populus: Towards Genome Wide Association Genetics (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Tuskan, Gerry

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gerry Tuskan of Oak Ridge National Laboratory on "Resequencing in Populus: Towards Genome Wide Association Genetics" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  13. GDB - Human Genome Database final report

    SciTech Connect (OSTI)

    Talbot, C. Conover, Jr.

    2002-01-08

    This is the DOE final report for the GDB, Human Genome Database, project at the Johns Hopkins University.

  14. Structural Genomics: Expectations and Reality

    Office of Scientific and Technical Information (OSTI)

    ... TB Structural Genomics Consortium, http:www.doe-mbi.ucla.eduTB (TB) Structures of M. tuberculosis proteome, with emphasis on functionally important proteins. Non-PSI ...

  15. To Know Ourselves: The U.S. Department of Energy and The Human Genome Project

    DOE R&D Accomplishments [OSTI]

    1996-07-01

    The Genome Project and its various aspects: why the DOE?; introducing the human genome; exploring the genomic landscape; beyond biology; and ethical, legal, and social implications.

  16. High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Tian, Rui; Parker, Matthew; Seshadri, Rekha; Reddy, T. B. K.; Markowitz, Victor; Ivanova, Natalia; Pati, Amrita; Woyke, Tanja; Baeshen, Mohammed; Baeshen, Nabih; et al

    2015-06-14

    Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Piedras in Costa Rica. In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 9,029,266 bp genome has a GC content of 62.56% with 247 contigs arranged into 246 scaffolds. The assembled genome contains 8,482 protein-coding genes and 102 RNA-only encoding genes. Lastly, this rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Rootmore » Nodule Bacteria (GEBA-RNB) project proposal.« less

  17. Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos

    SciTech Connect (OSTI)

    Tiwari, Ravi; Howieson, John; Yates, Ron; Tian, Rui; Held, Britanny; Tapia, Roxanne; Han, Cliff; Seshadri, Rekha; Reddy, T. B. K.; Huntemann, Marcel; Pati, Amrita; Woyke, Tanja; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; Reeve, Wayne

    2015-11-30

    Bradyrhizobium sp. WSM1253 is a novel N2-fixing bacterium isolated from a root nodule of the herbaceous annual legume Ornithopus compressus that was growing on the Greek Island of Sifnos. WSM1253 emerged as a strain of interest in an Australian program that was selecting inoculant quality bradyrhizobial strains for inoculation of Mediterranean species of lupins ( Lupinus angustifolius, L. princei, L. atlanticus, L. pilosus ). In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 8,719,808 bp genome has a G + C content of 63.09 % with 71 contigs arranged into two scaffolds. The assembled genome contains 8,432 protein-coding genes, 66 RNA genes and a single rRNA operon. In conclusion, this improved-high-quality draft rhizobial genome is one of 20 sequenced through a DOE Joint Genome Institute 2010 Community Sequencing Project.

  18. Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Tiwari, Ravi; Howieson, John; Yates, Ron; Tian, Rui; Held, Britanny; Tapia, Roxanne; Han, Cliff; Seshadri, Rekha; Reddy, T. B. K.; Huntemann, Marcel; et al

    2015-11-30

    Bradyrhizobium sp. WSM1253 is a novel N2-fixing bacterium isolated from a root nodule of the herbaceous annual legume Ornithopus compressus that was growing on the Greek Island of Sifnos. WSM1253 emerged as a strain of interest in an Australian program that was selecting inoculant quality bradyrhizobial strains for inoculation of Mediterranean species of lupins ( Lupinus angustifolius, L. princei, L. atlanticus, L. pilosus ). In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 8,719,808 bp genome has a G + C content of 63.09 % with 71 contigs arrangedmore » into two scaffolds. The assembled genome contains 8,432 protein-coding genes, 66 RNA genes and a single rRNA operon. In conclusion, this improved-high-quality draft rhizobial genome is one of 20 sequenced through a DOE Joint Genome Institute 2010 Community Sequencing Project.« less

  19. Multi-kb Illumina reads Reveal Significant Strain Variation and Rare Organisms in Aquifer (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Sharon, Itai

    2014-03-20

    Itai Sharon from the University of California at Berkely speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  20. Creating a Multi-functional Library of Grass Transcription Factors for the Energy Crop Model System Brachypodium Distachyon (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Coomey, Joshua

    2014-03-20

    Joshua Coomey of the University of Massachusetts Amherst, speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  1. Single Cell Isotope Probing via Raman Microspectroscopy: A New Way for Functional Analyses of Microbes in Environmental and Medical Samples (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Berry, David

    2014-03-20

    David Berry, University of Vienna, at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  2. Human Genome Project

    SciTech Connect (OSTI)

    Block, S.; Cornwall, J.; Dally, W.; Dyson, F.; Fortson, N.; Joyce, G.; Kimble, H. J.; Lewis, N.; Max, C.; Prince, T.; Schwitters, R.; Weinberger, P.; Woodin, W. H.

    1998-01-04

    The study reviews Department of Energy supported aspects of the United States Human Genome Project, the joint National Institutes of Health/Department of Energy program to characterize all human genetic material, to discover the set of human genes, and to render them accessible for further biological study. The study concentrates on issues of technology, quality assurance/control, and informatics relevant to current effort on the genome project and needs beyond it. Recommendations are presented on areas of the genome program that are of particular interest to and supported by the Department of Energy.

  3. Jointly Sponsored Research Program

    SciTech Connect (OSTI)

    Everett A. Sondreal; John G. Hendrikson; Thomas A. Erickson

    2009-03-31

    U.S. Department of Energy (DOE) Cooperative Agreement DE-FC26-98FT40321 funded through the Office of Fossil Energy and administered at the National Energy Technology Laboratory (NETL) supported the performance of a Jointly Sponsored Research Program (JSRP) at the Energy & Environmental Research Center (EERC) with a minimum 50% nonfederal cost share to assist industry in commercializing and effectively applying highly efficient, nonpolluting energy systems that meet the nation's requirements for clean fuels, chemicals, and electricity in the 21st century. The EERC in partnership with its nonfederal partners jointly performed 131 JSRP projects for which the total DOE cost share was $22,716,634 (38%) and the nonfederal share was $36,776,573 (62%). Summaries of these projects are presented in this report for six program areas: (1) resource characterization and waste management, (2) air quality assessment and control, (3) advanced power systems, (4) advanced fuel forms, (5) value-added coproducts, and (6) advanced materials. The work performed under this agreement addressed DOE goals for reductions in CO{sub 2} emissions through efficiency, capture, and sequestration; near-zero emissions from highly efficient coal-fired power plants; environmental control capabilities for SO{sub 2}, NO{sub x}, fine respirable particulate (PM{sub 2.5}), and mercury; alternative transportation fuels including liquid synfuels and hydrogen; and synergistic integration of fossil and renewable resources.

  4. Joint BioEnergy Institute

    SciTech Connect (OSTI)

    Keasling, Jay; Simmons, Blake; Tartaglino, Virginia; Baidoo, Edward; Kothari, Ankita

    2015-06-15

    The Joint BioEnergy Institute (JBEI) is a U.S. Department of Energy (DOE) Bioenergy Research Center dedicated to developing advanced biofuels—liquid fuels derived from the solar energy stored in plant biomass that can replace gasoline, diesel and jet fuels.

  5. Report/Product Number(s) DOE/ER/64701 DOE Award/Contract Number...

    Office of Scientific and Technical Information (OSTI)

    2013 SPONSORING DOE PROGRAM OFFICE DOE Plant Feedstock Genomics SUBJECT CATEGORIES ... We are currently preparing plant material from these selected transgenic plants to assess ...

  6. Human Genome Program

    SciTech Connect (OSTI)

    Not Available

    1993-01-01

    The DOE Human Genome program has grown tremendously, as shown by the marked increase in the number of genome-funded projects since the last workshop held in 1991. The abstracts in this book describe the genome research of DOE-funded grantees and contractors and invited guests, and all projects are represented at the workshop by posters. The 3-day meeting includes plenary sessions on ethical, legal, and social issues pertaining to the availability of genetic data; sequencing techniques, informatics support; and chromosome and cDNA mapping and sequencing.

  7. Fueling Future with Algal Genomics Grigoriev, Igor 59 BASIC BIOLOGICAL

    Office of Scientific and Technical Information (OSTI)

    play profound roles in the carbon cycle, and are prominent candidates for biofuel production. The US Department of Energy Joint Genome Institute (JGI) is leading the world...

  8. Fungal Genomics Program

    SciTech Connect (OSTI)

    Grigoriev, Igor

    2012-03-12

    The JGI Fungal Genomics Program aims to scale up sequencing and analysis of fungal genomes to explore the diversity of fungi important for energy and the environment, and to promote functional studies on a system level. Combining new sequencing technologies and comparative genomics tools, JGI is now leading the world in fungal genome sequencing and analysis. Over 120 sequenced fungal genomes with analytical tools are available via MycoCosm (www.jgi.doe.gov/fungi), a web-portal for fungal biologists. Our model of interacting with user communities, unique among other sequencing centers, helps organize these communities, improves genome annotation and analysis work, and facilitates new larger-scale genomic projects. This resulted in 20 high-profile papers published in 2011 alone and contributing to the Genomics Encyclopedia of Fungi, which targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts). Our next grand challenges include larger scale exploration of fungal diversity (1000 fungal genomes), developing molecular tools for DOE-relevant model organisms, and analysis of complex systems and metagenomes.

  9. DOE JGI Quality Metrics; Approaches to Scaling and Improving Metagenome Assembly (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    ScienceCinema (OSTI)

    Copeland, Alex [DOE JGI]; Brown, C Titus [Michigan State University

    2013-01-22

    DOE JGI's Alex Copeland on "DOE JGI Quality Metrics" and Michigan State University's C. Titus Brown on "Approaches to Scaling and Improving Metagenome Assembly" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  10. Natural variation in Brachypodium disctachyon: Deep Sequencing of Highly Diverse Natural Accessions (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Gordon, Sean

    2013-03-01

    Sean Gordon of the USDA on "Natural variation in Brachypodium disctachyon: Deep Sequencing of Highly Diverse Natural Accessions" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  11. Assembly-driven metagenomics of a hypersaline microbial ecosystem (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Allen, Eric

    2013-03-01

    Eric Allen of Scripps and UC San Diego on "Assembly-driven metagenomics of a hypersaline microbial ecosystem" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  12. Succession of Phylogeny and Function During Plant Litter Decomposition (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Brodie, Eoin

    2013-03-01

    Eoin Brodie of Berkeley Lab on "Succession of phylogeny and function during plant litter decomposition" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  13. TARA OCEANS: A Global Analysis of Oceanic Plankton Ecosystems (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Karsenti, Eric [EMBL Heidelberg

    2013-03-01

    Eric Karsenti of EMBL delivers the closing keynote on "TARA OCEANS: A Global Analysis of Oceanic Plankton Ecosystems" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

  14. Delineating Molecular Interaction Mechanisms in an In Vitro Microbial-Plant Community (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Larsen, Peter [Argonne

    2013-03-01

    Peter Larsen of Argonne National Lab on "Delineating molecular interaction mechanisms in an in vitro microbial-plant community" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

  15. Modulation of Root Microbiome Community Assembly by the Plant Immune Response (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Lebeis, Sarah [University of North Carolina

    2013-03-01

    Sarah Lebeis of University of North Carolina on "Modulation of root microbiome community assembly by the plant immune response" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

  16. Network as Discovery Instrument: A Quick-Start Guide (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Bell, Gregory [Berkeley Lab

    2013-03-01

    Gregory Bell of Berkeley Lab on "Network as discovery instrument: a Quick-Start Guide" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

  17. Genetic Regulation of Grass Biomass Accumulation and Biological Conversion Quality (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Hazen, Sam [University of Massachusetts

    2013-03-01

    Sam Hazen of the University of Massachusetts on "Genetic Regulation of Grass Biomass Accumulation and Biological Conversion Quality" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  18. Metabolic Engineering of Clostridium thermocellum for Biofuel Production (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Guess, Adam

    2013-03-01

    Adam Guss of Oak Ridge National Lab on "Metabolic engineering of Clostridium thermocellum for biofuel production" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

  19. Biodiversity Monitoring Using NGS Approaches on Unusual Substrates (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    SciTech Connect (OSTI)

    Gilbert, Tom

    2013-03-01

    Tom Gilbert of the Natural History Museum of Denmark on "Biodiversity monitoring using NGS approaches on unusual substrates" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

  20. Joint Coordinating Committee | National Nuclear Security Administration

    National Nuclear Security Administration (NNSA)

    Joint Coordinating Committee

  1. High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Tian, Rui; Parker, Matthew; Seshadri, Rekha; Reddy, T. B. K.; Markowitz, Victor; Ivanova, Natalia; Pati, Amrita; Woyke, Tanja; Baeshen, Mohammed N.; Baeshen, Nabih A.; et al

    2015-05-16

    Bradyrhizobium sp. Th.b2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Amphicarpaea bracteata collected in Johnson City, New York. Here we describe the features of Bradyrhizobium sp. Th.b2, together with high-quality permanent draft genome sequence information and annotation. The 10,118,060 high-quality draft genome is arranged in 266 scaffolds of 274 contigs, contains 9,809 protein-coding genes and 108 RNA-only encoding genes. In conclusion, this rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

  2. High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Tian, Rui; Parker, Matthew; Seshadri, Rekha; Reddy, TBK; Markowitz, Victor; Ivanova, Natalia; Pati, Amrita; Woyke, Tanja; Baeshen, Mohammed N.; Baeshen, Nabih A.; et al

    2015-05-17

    Bradyrhizobiumsp. Tv2a.2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Tachigali versicolor collected in Barro Colorado Island of Panama. Here we describe the features of Bradyrhizobiumsp. Tv2a.2, together with high-quality permanent draft genome sequence information and annotation. The 8,496,279 bp high-quality draft genome is arranged in 87 scaffolds of 87 contigs, contains 8,109 protein-coding genes and 72 RNA-only encoding genes. In conclusion, this rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

  3. Genomic Sequencing of Single Bacterial Cells (2010 JGI User Meeting)

    SciTech Connect (OSTI)

    Woyke, Tanje

    2010-03-26

    Tanja Woyke from the DOE JGI on the "Genomic Sequencing of Single Bacterial Cells" on March 26, 2010 at the 5th Annual DOE JGI User Meeting

  4. Mapping the Topology of the Human Genome

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Mapping the Topology of the Human Genome Mapping the Topology of the Human Genome Print Monday, 11 July 2016 00:00 Department of Energy facilities such as the Joint Genome Institute provide us with DNA sequences for entire genomes, most famously the human genome. However, a DNA sequence alone isn't sufficient to determine how a gene will function in a cell, or if indeed it will be functional at all. We also need to know the spatial 3D arrangement of the genome in the nucleus. A single strand of

  5. Joint Electromagnetic Pulse Resilience Strategy | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Electromagnetic Pulse Resilience Strategy Joint Electromagnetic Pulse Resilience Strategy The Joint Electromagnetic Pulse Resilience Strategy is a collaboration between the Department of Energy (DOE) and the Electric Power Research Institute (EPRI) that enhances coordination and guides future efforts to help meet the growing demands for electromagnetic pulse (EMP) guidance. The Joint Strategy lays out five strategic goals to guide DOE and EPRI to minimize EMP impacts and improve resilience: 1.

  6. Joint Meeting on Hydrogen Delivery Modeling and Analysis Meeting Attendees

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    List | Department of Energy Attendees List Joint Meeting on Hydrogen Delivery Modeling and Analysis Meeting Attendees List Attendee list from the Joint Meeting on Hydrogen Delivery Modeling and Analysis, May 8-9, 2007 deliv_analysis_attendees.pdf (77.35 KB) More Documents & Publications DOE and FreedomCAR and Fuel Partnership Analysis Workshop Joint Meeting on Hydrogen Delivery Modeling and Analysis Meeting Agenda DOE and FreedomCAR and Fuel Partnership Analysis Workshop

  7. Russian Health Studies Program - Joint Coordinating Committee for Radiation

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Effects Research (JCCRER) | Department of Energy Joint Coordinating Committee for Radiation Effects Research (JCCRER) Russian Health Studies Program - Joint Coordinating Committee for Radiation Effects Research (JCCRER) Joint Coordinating Committee for Radiation Effects Research (JCCRER) All About the Joint Coordinating Committee for Radiation Effects Research What is the JCCRER? Why is it important? DOE's Russian Health Studies Program Principal Areas of Cooperation Under the JCCRER

  8. Seismic Capacity of Threaded, Brazed, and Grooved Pipe Joints

    Office of Environmental Management (EM)

    SEISMIC CAPACITY OF THREADED, BRAZED AND GROOVED PIPE JOINTS Brent Gutierrez, PhD, PE George Antaki, PE, F.ASME DOE NPH Conference October 25-26, 2011 Motivation * Understand the behavior and failure mode of common joints under extreme lateral loads * Static and shake table tests conducted of pressurized - Threaded, - Brazed, - Mechanical joints Static Testing o Pressurized spool to 150 psi o Steady downward force applied while recording deflections o Grooved clamped mech. joints * 16 tests

  9. Immortalization of normal human mammary epithelial cells in two steps by direct targeting of senescence barriers does not require gross genomic alterations

    SciTech Connect (OSTI)

    Garbe, James C.; Vrba, Lukas; Sputova, Klara; Fuchs, Laura; Novak, Petr; Brothman, Arthur R.; Jackson, Mark; Chin, Koei; LaBarge, Mark A.; Watts, George; Futscher, Bernard W.; Stampfer, Martha R.

    2014-10-29

    Telomerase reactivation and immortalization are critical for human carcinoma progression. However, little is known about the mechanisms controlling this crucial step, due in part to the paucity of experimentally tractable model systems that can examine human epithelial cell immortalization as it might occur in vivo. We achieved efficient non-clonal immortalization of normal human mammary epithelial cells (HMEC) by directly targeting the 2 main senescence barriers encountered by cultured HMEC. The stress-associated stasis barrier was bypassed using shRNA to p16INK4; replicative senescence due to critically shortened telomeres was bypassed in post-stasis HMEC by c-MYC transduction. Thus, 2 pathologically relevant oncogenic agents are sufficient to immortally transform normal HMEC. The resultant non-clonal immortalized lines exhibited normal karyotypes. Most human carcinomas contain genomically unstable cells, with widespread instability first observed in vivo in pre-malignant stages; in vitro, instability is seen as finite cells with critically shortened telomeres approach replicative senescence. Our results support our hypotheses that: (1) telomere-dysfunction induced genomic instability in pre-malignant finite cells may generate the errors required for telomerase reactivation and immortalization, as well as many additional “passenger” errors carried forward into resulting carcinomas; (2) genomic instability during cancer progression is needed to generate errors that overcome tumor suppressive barriers, but not required per se; bypassing the senescence barriers by direct targeting eliminated a need for genomic errors to generate immortalization. Achieving efficient HMEC immortalization, in the absence of “passenger” genomic errors, should facilitate examination of telomerase regulation during human carcinoma progression, and exploration of agents that could prevent immortalization.

  10. Immortalization of normal human mammary epithelial cells in two steps by direct targeting of senescence barriers does not require gross genomic alterations

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Garbe, James C.; Vrba, Lukas; Sputova, Klara; Fuchs, Laura; Novak, Petr; Brothman, Arthur R.; Jackson, Mark; Chin, Koei; LaBarge, Mark A.; Watts, George; et al

    2014-10-29

    Telomerase reactivation and immortalization are critical for human carcinoma progression. However, little is known about the mechanisms controlling this crucial step, due in part to the paucity of experimentally tractable model systems that can examine human epithelial cell immortalization as it might occur in vivo. We achieved efficient non-clonal immortalization of normal human mammary epithelial cells (HMEC) by directly targeting the 2 main senescence barriers encountered by cultured HMEC. The stress-associated stasis barrier was bypassed using shRNA to p16INK4; replicative senescence due to critically shortened telomeres was bypassed in post-stasis HMEC by c-MYC transduction. Thus, 2 pathologically relevant oncogenic agentsmore » are sufficient to immortally transform normal HMEC. The resultant non-clonal immortalized lines exhibited normal karyotypes. Most human carcinomas contain genomically unstable cells, with widespread instability first observed in vivo in pre-malignant stages; in vitro, instability is seen as finite cells with critically shortened telomeres approach replicative senescence. Our results support our hypotheses that: (1) telomere-dysfunction induced genomic instability in pre-malignant finite cells may generate the errors required for telomerase reactivation and immortalization, as well as many additional “passenger” errors carried forward into resulting carcinomas; (2) genomic instability during cancer progression is needed to generate errors that overcome tumor suppressive barriers, but not required per se; bypassing the senescence barriers by direct targeting eliminated a need for genomic errors to generate immortalization. Achieving efficient HMEC immortalization, in the absence of “passenger” genomic errors, should facilitate examination of telomerase regulation during human carcinoma progression, and exploration of agents that could prevent immortalization.« less

  11. Diatom Genomics (2009 JGI User Meeting)

    ScienceCinema (OSTI)

    Ambrust, Ginger

    2011-04-25

    Ginger Armbrust from the University of Washington spoke about diatom genomics on March 26, 2009 at the DOE JGI User Meeting

  12. Diatom Genomics (2009 JGI User Meeting)

    SciTech Connect (OSTI)

    Ambrust, Ginger

    2009-03-26

    Ginger Armbrust from the University of Washington spoke about diatom genomics on March 26, 2009 at the DOE JGI User Meeting

  13. Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Berben, Tom; Sorokin, Dimitry Y.; Ivanova, Natalia; Pati, Amrita; Kyrpides, Nikos; Goodwin, Lynne A.; Woyke, Tanja; Muyzer, Gerard

    2015-11-19

    Thioalkalivibrio paradoxus strain ARh 1T is a chemolithoautotrophic, non-motile, Gram-negative bacterium belonging to the Gammaproteobacteria that was isolated from samples of haloalkaline soda lakes. It derives energy from the oxidation of reduced sulfur compounds and is notable for its ability to grow on thiocyanate as its sole source of electrons, sulfur and nitrogen. The full genome consists of 3,756,729 bp and comprises 3,500 protein-coding and 57 RNA-coding genes. Moreover, this organism was sequenced as part of the community science program at the DOE Joint Genome Institute.

  14. OSTIblog Articles in the genomics Topic | OSTI, US Dept of Energy...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ... Related Topics: Charles DeLisi, DNA, DOE Research & Development (R&D) Accomplishments, genomics, Human Genome Project, Santa Fe Workshop, sequencing Read more... Managing the ...

  15. Bonus Organisms in High-Throughput Eukaryotic Whole-Genome Shorgun Assembly

    SciTech Connect (OSTI)

    Pangilinan, Jasmyn; Shapiro, Harris; Tu, Hank; Platt, Darren

    2006-02-06

    The DOE Joint Genome Institute has sequenced over 50 eukaryotic genomes, ranging in size from 15 MB to 1.6 GB, over a wide range of organism types. In the course of doing so, it has become clear that a substantial fraction of these data sets contains bonus organisms, usually prokaryotes, in addition to the desired genome. While some of these additional organisms are extraneous contamination, they are sometimes symbionts, and so can be of biological interest. Therefore, it is desirable to assemble the bonus organisms along with the main genome. This transforms the problem into one of metagenomic assembly, which is considerably more challenging than traditional whole-genome shotgun (WGS) assembly. The different organisms will usually be present at different sequence depths, which is difficult to handle in most WGS assemblers. In addition, with multiple distinct genomes present, chimerism can produce cross-organism combinations. Finally, there is no guarantee that only a single bonus organism will be present. For example, one JGI project contained at least two different prokaryotic contaminants, plus a 145 KB plasmid of unknown origin. We have developed techniques to routinely identify and handle such bonus organisms in a high-throughput sequencing environment. Approaches include screening and partitioning the unassembled data, and iterative subassemblies. These methods are applicable not only to bonus organisms, but also to desired components such as organelles. These procedures have the additional benefit of identifying, and allowing for the removal of, cloning artifacts such as E.coli and spurious vector inclusions.

  16. DOE Review Umar Vanderbilt

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Cheaper Biofuels | Department of Energy Researchers Achieve Important Genetic Breakthroughs to Help Develop Cheaper Biofuels DOE Researchers Achieve Important Genetic Breakthroughs to Help Develop Cheaper Biofuels December 22, 2011 - 2:26pm Addthis Washington D.C. - Researchers at the U.S. Department of Energy's (DOE's) Joint BioEnergy Institute (JBEI) announced today a major breakthrough in engineering systems of RNA molecules through computer-assisted design, which could lead to important

  17. Human genome. 1993 Program report

    SciTech Connect (OSTI)

    Not Available

    1994-03-01

    The purpose of this report is to update the Human Genome 1991-92 Program Report and provide new information on the DOE genome program to researchers, program managers, other government agencies, and the interested public. This FY 1993 supplement includes abstracts of 60 new or renewed projects and listings of 112 continuing and 28 completed projects. These two reports, taken together, present the most complete published view of the DOE Human Genome Program through FY 1993. Research is progressing rapidly toward 15-year goals of mapping and sequencing the DNA of each of the 24 different human chromosomes.

  18. Large displacement spherical joint

    DOE Patents [OSTI]

    Bieg, Lothar F.; Benavides, Gilbert L.

    2002-01-01

    A new class of spherical joints has a very large accessible full cone angle, a property which is beneficial for a wide range of applications. Despite the large cone angles, these joints move freely without singularities.

  19. 2014 Joint Action Workshop

    Broader source: Energy.gov [DOE]

    The Joint Action Workshop is an annual event for joint action agencies and their members to meet informally and discuss emerging policy, regulatory, and power supply issues, and other topics...

  20. Microsoft PowerPoint - Microbial Genome and Metagenome Analysis Case Study (NERSC Workshop - May 7-8, 2009).ppt [Compatibility

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Microbial Genome & Metagenome Analysis: Computational Challenges Natalia N. Ivanova * Nikos C. Kyrpides * Victor M. Markowitz ** * Genome Biology Program, Joint Genome Institute ** Lawrence Berkeley National Lab Microbial genome & metagenome analysis General aims Understand microbial life Apply to agriculture, bioremediation, biofuels, human health Specific aims include Specific aims include Predict biochemistry & physiology of organisms based on genome sequence Explain known

  1. Photo of the Week: Sequencing the Genome of the Poplar Tree ...

    Broader source: Energy.gov (indexed) [DOE]

    -- and working to develop specific strains of poplars for various applications, like biofuel production. In 2006, researchers at the Energy Departments Joint Genome...

  2. Joint Facilities User Forum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Joint Environmental Management System (EMS) Joint Environmental Management System (EMS) Joint Environmental Management System (EMS) The environmental management system (EMS) has two areas of focus: environmental compliance and environmental sustainability. The environmental compliance aspect of the EMS consists of regulatory compliance and monitoring programs that implement federal, state, local, and tribal requirements; agreements; and permits under the Legacy Management contract. The

  3. Joint Fuel Cell Bus Workshop Summary Report | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Bus Workshop Summary Report Joint Fuel Cell Bus Workshop Summary Report Presentation at DOE & DOT Joint Fuel Cell Bus Workshop, June 7, 2010 buswksp10_summary.pdf (3.59 MB) More Documents & Publications HybriDrive Propulsion System Hydrogen and Fuel Cell Transit Bus Evaluations: Joint Evaluation Plan for the U.S. Department of Energy and the Federal Transit Administration; Appendix Fuel Cell Bus Workshop

  4. Joint Center for Artificial Photosynthesis

    ScienceCinema (OSTI)

    Koval, Carl; Lee, Kenny; Houle, Frances; Lewis, Nate

    2013-12-19

    The Joint Center for Artificial Photosynthesis (JCAP) is the nation's largest research program dedicated to the development of an artificial solar-fuel generation technology. Established in 2010 as a U.S. Department of Energy (DOE) Energy Innovation Hub, JCAP aims to find a cost-effective method to produce fuels using only sunlight, water, and carbon dioxide as inputs. JCAP brings together more than 140 top scientists and researchers from the California Institute of Technology and its lead partner, Berkeley Lab, along with collaborators from the SLAC National Accelerator Laboratory, and the University of California campuses at Irvine and San Diego.

  5. SEISMIC CAPACITY OF THREADED, BRAZED AND GROOVED PIPE JOINTS

    Broader source: Energy.gov [DOE]

    Seismic Capacity of Threaded, Brazed and Grooved Pipe Joints Brent Gutierrez, PhD, PE George Antaki, PE, F.ASME DOE NPH Conference October 25-26, 2011

  6. Vehicle Technologies Office Merit Review 2015: Joint Development and Coordination of Emissions Control Data and Models

    Broader source: Energy.gov [DOE]

    Presentation given by Oak Ridge National Laboratory at 2015 DOE Hydrogen and Fuel Cells Program and Vehicle Technologies Office Annual Merit Review and Peer Evaluation Meeting about joint...

  7. DOEs Effort to Reduce Truck Aerodynamic Drag through Joint...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Drag through Joint Experiments and Computations Vehicle Technologies Office Merit Review 2014: DOE's Effort to Improve Heavy Vehicle Fuel Efficiency through Improved Aerodynamics

  8. Joint Statement between U.S. Department of Energy and Republic...

    Office of Environmental Management (EM)

    by DOE and MOTIE in December 2012 to launch joint projects in smart grid and fuel cell vehicle technologies, and looked forward to exploring additional mutually beneficial ...

  9. Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake

    SciTech Connect (OSTI)

    Berben, Tom; Sorokin, Dimitry Y.; Ivanova, Natalia; Pati, Amrita; Kyrpides, Nikos; Goodwin, Lynne A.; Woyke, Tanja; Muyzer, Gerard

    2015-11-19

    Thioalkalivibrio paradoxus strain ARh 1T is a chemolithoautotrophic, non-motile, Gram-negative bacterium belonging to the Gammaproteobacteria that was isolated from samples of haloalkaline soda lakes. It derives energy from the oxidation of reduced sulfur compounds and is notable for its ability to grow on thiocyanate as its sole source of electrons, sulfur and nitrogen. The full genome consists of 3,756,729 bp and comprises 3,500 protein-coding and 57 RNA-coding genes. Moreover, this organism was sequenced as part of the community science program at the DOE Joint Genome Institute.

  10. Joint Outreach Task Group Former Workers Screening Program | Department of

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Energy Former Workers Screening Program Joint Outreach Task Group Former Workers Screening Program The Joint Outreach Task Group (JOTG) includes representatives from DOE, Department of Labor (DOL), the National Institute for Occupational Safety and Health (NIOSH), the Offices of the Ombudsman for DOL and NIOSH, and the DOE-funded FWP projects. The JOTG was established in 2009 under the premise that agencies/programs with common goals can work together by combining resources and coordinating

  11. DOE | National Nuclear Security Administration

    National Nuclear Security Administration (NNSA)

    DOE DOE, NNSA leaders open summit on the physical security of nuclear weapons Deputy Secretary of Energy Elizabeth Sherwood-Randall, NNSA Principal Deputy Administrator Madelyn Creedon, and numerous speakers from throughout the Nuclear Security Enterprise spoke at the 2016 Nuclear Weapons Physical Security Collaboration Summit earlier this month at Joint Base Andrews in... NNSA & DOE Employees Use Tiny Smartphone Microscopes to Teach STEM Users discovered items the device could magnify, such

  12. Complete genome sequences of Geobacillus sp. WCH70, a thermophilic strain isolated from wood compost

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Brumm, Phillip; Land, Miriam L.; Mead, David

    2016-04-27

    Geobacillus sp. WCH70 was one of several thermophilic organisms isolated from hot composts in the Middleton, WI area. Comparison of 16 S rRNA sequences showed the strain may be a new species, and is most closely related to G. galactosidasius and G. toebii. The genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2009 (CP001638). The genome of Geobacillus species WCH70 consists of one circular chromosome of 3,893,306 bp with an average G + C content of 43 %, and two circular plasmids of 33,899 and 10,287 bp with anmore » average G + C content of 40 %. Among sequenced organisms, Geobacillus sp. WCH70 shares highest Average Nucleotide Identity (86 %) with G. thermoglucosidasius strains, as well as similar genome organization. Geobacillus sp. WCH70 appears to be a highly adaptable organism, with an exceptionally high 125 annotated transposons in the genome. The organism also possesses four predicted restriction-modification systems not found in other Geobacillus species.« less

  13. Celebration of the Genome - Secretary Abraham Statement 4/10...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    DNA sequence of the human genome. This coming week, representatives of DOE and the National Institutes of Health will announce the completion of the sequencing of the human genome. ...

  14. INSPECTION OF FUSION JOINTS IN PLASTIC PIPE

    SciTech Connect (OSTI)

    Alex Savitski; Connie Reichert; John Coffey

    2005-07-13

    The standard method of joining plastic pipe in the field is the butt fusion process. As in any pipeline application, joint quality greatly affects overall operational safety of the system. Currently no simple, reliable, cost effective method of assessing the quality of fusion joints in the field exists. Visual examination and pressure testing are current non-destructive approaches, which do not provide any assurance about the long-term pipeline performance. This project will develop, demonstrate, and validate an in-situ non-destructive inspection method for butt fusion joints in gas distribution plastic pipelines. The inspection system will include a laser based image-recognition system that will automatically generate and interpret digital images of pipe joints and assign them a pass/fail rating, which eliminates operator bias in evaluating joint quality. A Weld Zone Inspection Method (WZIM) is being developed in which local heat is applied to the joint region to relax the residual stresses formed by the original joining operation and reveal the surface condition of the joint. In cases where the joint is not formed under optimal conditions, and the intermolecular forces between contacting surfaces are not strong enough, the relaxation of macromolecules in the surface layer causes the material to pull back, revealing a fusion line. If the joint is sound, the bond line image does not develop. To establish initial feasibility of the approach, welds were performed under standard and nonstandard conditions. These welds were subjected to the WZIM and tensile testing. There appears to be a direct correlation between the WZIM and tensile testing results. Although WZIM appears to be more sensitive than tensile testing can verify, the approach appears valid.

  15. Inspection of Fusion Joints in Plastic Pipe

    SciTech Connect (OSTI)

    Connie Reichert

    2005-09-01

    The standard method of joining plastic pipe in the field is the butt fusion process. As in any pipeline application, joint quality greatly affects overall operational safety of the system. Currently no simple, reliable, cost-effective method exists for assessing the quality of fusion joints in the field. Visual examination and pressure testing are current nondestructive approaches, which do not provide any assurance about the long-term pipeline performance. This project developed, demonstrated, and validated an in-situ nondestructive inspection method for butt fusion joints in gas distribution plastic pipelines. The inspection system includes a laser-based image-recognition system that automatically generates and interprets digital images of pipe joints and assigns them a pass/fail rating, which eliminates operator bias in evaluating joint quality. An EWI-patented process, the Weld Zone Inspection Method (WZIM) was developed in which local heat is applied to the joint region to relax the residual stresses formed by the original joining operation, which reveals the surface condition of the joint. In cases where the joint is not formed under optimal conditions, and the intermolecular forces between contacting surfaces are not strong enough, the relaxation of macromolecules in the surface layer causes the material to pull back, revealing a fusion line. If the joint is sound, the bond line image does not develop. To establish initial feasibility of the approach, welds were performed under standard and nonstandard conditions. These welds were subjected to the WZIM and two destructive forms of testing: short-term tensile testing and long-term creep rupture testing. There appears to be a direct correlation between the WZIM and the destructive testing results. Although WZIM appears to be more sensitive than destructive testing can verify, the approach appears valid.

  16. WIPP - Joint Information Center

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Joint Information Center is located at 4021 National Parks Highway in Carlsbad, N.M. Joint Information Center In the unlikely event of an emergency, the WIPP Joint Information Center (JIC) serves as a central control point to coordinate multi-agency efforts to issue timely and accurate information to the public, news media and project employees. Emergency contact information: The public If the JIC is activated, members of the general public, including family members, may call (575) 234-7380

  17. EIS-0408: DOE Notice of Availability of a Programmatic Draft...

    Broader source: Energy.gov (indexed) [DOE]

    jointly by DOE's Western Area Power Administration and the Department of the Interior's Fish and Wildlife Service, will evaluate the environmental impacts of wind energy...

  18. DOE Partners with Other Federal Agencies Working on the Wind...

    Broader source: Energy.gov (indexed) [DOE]

    Bill Presenting Joint Mtg.jpg LM Site Manager, Bill Dam, presenting objectives and ... Bill Dam, LM Riverton Site Manager, talked about DOE's requirements for financial ...

  19. Microsoft Word - DOE_EMPStrategy_July2016 - AK

    Office of Environmental Management (EM)

    Joint Electromagnetic Pulse Resilience Strategy A Collaborative Effort of the U.S. ... For DOE, the strategy was prepared by the Office of Electricity Delivery and Energy ...

  20. EIS-0450: DOE Notice of Availability of Draft Environmental Impact...

    Broader source: Energy.gov (indexed) [DOE]

    the TransWest Express Transmission Project in Wyoming, Colorado, Utah, and Nevada. The Bureau of Land Management and DOE's Western Area Power Administration, joint lead agencies...

  1. Human Genome Program Image Gallery (from genomics.energy.gov)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    This collection contains approximately 240 images from the genome programs of DOE's Office of Science. The images are divided into galleries related to biofuels research, systems biology, and basic genomics. Each image has a title, a basic citation, and a credit or source. Most of the images are original graphics created by the Genome Management Information System (GMIS). GMIS images are recognizable by their credit line. Permission to use these graphics is not needed, but please credit the U.S. Department of Energy Genome Programs and provide the website http://genomics.energy.gov. Other images were provided by third parties and not created by the U.S. Department of Energy. Users must contact the person listed in the credit line before using those images. The high-resolution images can be downloaded.

  2. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology Genomics and Systems Biology Los Alamos scientists perform research in functional genomics and structural genomics, and applications for such work ...

  3. Genome Engineering

    SciTech Connect (OSTI)

    Voytas, Dan

    2014-03-20

    Dan Voytas, University of Minnesota, at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif

  4. Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Kappler, Ulrike; Davenport, Karen W.; Beatson, Scott; Lapidus, Alla L.; Pan, Chongle; Han, Cliff; Montero-Calasanz, Maria del Carmen; Land, Miriam L.; Hauser, Loren John; Rohde, Manfred; et al

    2016-06-03

    Thioalkalimicrobium cyclicum (Sorokin et al. 2002) is a member of the family Piscirickettsiaceae in the order Thiotrichales. The -proteobacterium belongs to the colourless sulfur-oxidizing bacteria isolated from saline soda lakes with stable alkaline pH, such as Lake Mono (California) and Soap Lake (Washington State). Strain ALM 1T is characterized by its adaptation to life in the oxic/anoxic interface towards the less saline aerobic waters (mixolimnion) of the stable stratified alkaline salt lakes. Strain ALM 1T is the first representative of the genus Thioalkalimicrobium whose genome sequence has been deciphered and the fourth genome sequence of a type strain of themore » Piscirickettsiaceae to be published. As a result, the 1,932,455 bp long chromosome with its 1,684 protein-coding and 50 RNA genes was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program (CSP) 2008.« less

  5. Phytozome System for Comparative Plant Genomics

    Energy Science and Technology Software Center (OSTI)

    2011-09-27

    Phytozome is a joint project of the Department of Energy's Joint Genome Institute and the UC Berkeley Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. Families of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release 7.0, Phytozome providesmore » access to twenty-five sequenced and annotated green plant genomes which have been clustered into gene families at eleven evolutionarily significant nodes., Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are lyper-linked and searchable.« less

  6. DOE Recognizes Top ENERGY STAR Partners | Department of Energy

    Office of Environmental Management (EM)

    ... ENERGY STAR is a joint DOE-EPA program, formed in 1992 as a voluntary, market-based partnership that seeks to reduce air pollution through increased energy efficiency. DOE and ...

  7. DOE Reaches Agreement with LG Electronics, USA, On Refrigerator...

    Energy Savers [EERE]

    ... ENERGY STAR is a joint DOE-EPA program, formed in 1992 as a voluntary, market-based partnership that seeks to reduce air pollution through increased energy efficiency. DOE and ...

  8. Stories of Discovery & Innovation: From Human Genome to Materials "Genome"

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    | U.S. DOE Office of Science (SC) From Human Genome to Materials "Genome" Energy Frontier Research Centers (EFRCs) EFRCs Home Centers Research Science Highlights News & Events EFRC News EFRC Events DOE Announcements Publications History Contact BES Home 07.09.14 Stories of Discovery & Innovation: From Human Genome to Materials "Genome" Print Text Size: A A A Subscribe FeedbackShare Page Government initiative seeks to speed the pace of materials discovery and

  9. Joint Fuel Cell Bus Workshop Summary Report

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Joint Fuel Cell Bus Workshop Summary Report Prepared for: U.S. Department of Energy (DOE/EERE) U.S. Department of Transportation (DOT/FTA) Prepared by: Thomas G. Benjamin Argonne National Laboratory Kristen Nawoj Sentech, Inc. Donna Ho U.S. Department of Energy June 7, 2010 8:00 AM - 12:00 PM Washington Wardman Park Marriott Hotel Washington, DC News Alert distributed May 20, 2010 The U.S. Department of Energy (DOE) and the U.S. Department of Transportation (DOT) will hold a Fuel Cell Bus

  10. Handbook on dynamics of jointed structures.

    SciTech Connect (OSTI)

    Ames, Nicoli M.; Lauffer, James P.; Jew, Michael D.; Segalman, Daniel Joseph; Gregory, Danny Lynn; Starr, Michael James; Resor, Brian Ray

    2009-07-01

    The problem of understanding and modeling the complicated physics underlying the action and response of the interfaces in typical structures under dynamic loading conditions has occupied researchers for many decades. This handbook presents an integrated approach to the goal of dynamic modeling of typical jointed structures, beginning with a mathematical assessment of experimental or simulation data, development of constitutive models to account for load histories to deformation, establishment of kinematic models coupling to the continuum models, and application of finite element analysis leading to dynamic structural simulation. In addition, formulations are discussed to mitigate the very short simulation time steps that appear to be required in numerical simulation for problems such as this. This handbook satisfies the commitment to DOE that Sandia will develop the technical content and write a Joints Handbook. The content will include: (1) Methods for characterizing the nonlinear stiffness and energy dissipation for typical joints used in mechanical systems and components. (2) The methodology will include practical guidance on experiments, and reduced order models that can be used to characterize joint behavior. (3) Examples for typical bolted and screw joints will be provided.

  11. High pressure ceramic joint

    DOE Patents [OSTI]

    Ward, M.E.; Harkins, B.D.

    1993-11-30

    Many recuperators have components which react to corrosive gases and are used in applications where the donor fluid includes highly corrosive gases. These recuperators have suffered reduced life, increased service or maintenance, and resulted in increased cost. The present joint when used with recuperators increases the use of ceramic components which do not react to highly corrosive gases. Thus, the present joint used with the present recuperator increases the life, reduces the service and maintenance, and reduces the increased cost associated with corrosive action of components used to manufacture recuperators. The present joint is comprised of a first ceramic member, a second ceramic member, a mechanical locking device having a groove defined in one of the first ceramic member and the second ceramic member. The joint and the mechanical locking device is further comprised of a refractory material disposed in the groove and contacting the first ceramic member and the second ceramic member. The present joint mechanically provides a high strength load bearing joint having good thermal cycling characteristics, good resistance to a corrosive environment and good steady state strength at elevated temperatures. 4 figures.

  12. High pressure ceramic joint

    DOE Patents [OSTI]

    Ward, Michael E.; Harkins, Bruce D.

    1993-01-01

    Many recuperators have components which react to corrosive gases and are used in applications where the donor fluid includes highly corrosive gases. These recuperators have suffered reduced life, increased service or maintenance, and resulted in increased cost. The present joint when used with recuperators increases the use of ceramic components which do not react to highly corrosive gases. Thus, the present joint used with the present recuperator increases the life, reduces the service and maintenance, and reduces the increased cost associated with corrosive action of components used to manufacture recuperators. The present joint is comprised of a first ceramic member, a second ceramic member, a mechanical locking device having a groove defined in one of the first ceramic member and the second ceramic member. The joint and the mechanical locking device is further comprised of a refractory material disposed in the groove and contacting the first ceramic member and the second ceramic member. The present joint mechanically provides a high strength load bearing joint having good thermal cycling characteristics, good resistance to a corrosive environment and good steady state strength at elevated temperatures.

  13. OSTIblog Articles in the Human Genome Project Topic | OSTI, US Dept of

    Office of Scientific and Technical Information (OSTI)

    Energy Office of Scientific and Technical Information Human Genome Project Topic DOE and Human Genome Research by Mary Schorn 28 Mar, 2014 in Products and Content 16902 delisi.jpg DOE and Human Genome Research Read more about 16902 The U.S. Department of Energy (DOE) has historically played a leading role in supporting human genome research. March 2014 is the anniversary of the 1986 Santa Fe Workshop, which brought together participants from government, academia, and the private sector to

  14. Genome Improvement at JGI-HAGSC

    SciTech Connect (OSTI)

    Grimwood, Jane: Schmutz, Jeremy, J.: Myers, Richard, M.

    2012-03-03

    Since the completion of the sequencing of the human genome, the JGI has rapidly expanded its scientific goals in several DOE mission-relevant areas. At the JGI-HAGSC, we have kept pace with this rapid expansion of projects with our focus on assessing, assembling, improving and finishing eukaryotic whole genome shotgun (WGS) projects for which the shotgun sequence is generated at the Production Genomic Facility (JGI-PGF). We follow this by combining the draft WGS with genomic resources generated at JGI-HAGSC or in collaborator laboratories (including BAC end sequences, genetic maps and FLcDNA sequences) to produce an improved draft sequence. For eukaryotic genomes important to the DOE mission, we then add further information from directed experiments to produce reference genomic sequences that are publicly available for any scientific researcher. Also, we have continued our program for producing BAC-based finished sequence, both for adding information to JGI genome projects and for small BAC-based sequencing projects proposed through any of the JGI sequencing programs. We have now built our computational expertise in WGS assembly and analysis and have moved eukaryotic genome assembly from the JGI-PGF to JGI-HAGSC. We have concentrated our assembly development work on large plant genomes and complex fungal and algal genomes.

  15. High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Ntougias, Spyridon; Lapidus, Alla; Copeland, Alex; Reddy, T. B. K.; Pati, Amrita; Ivanova, Natalia N.; Markowitz, Victor M.; Klenk, Hans-Peter; Woyke, Tanja; Fasseas, Constantinos; et al

    2015-08-13

    Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and annotation of Halotalea alkalilenta AW-7T are described. The microorganism was sequenced as a part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project at the DOE Joint Genome Institute, and it is the only strain within the genus Halotalea having its genome sequenced. The genome is 4,467,826 bp longmore » and consists of 40 scaffolds with 64.62 % average GC content. A total of 4,104 genes were predicted, comprising of 4,028 protein-coding and 76 RNA genes. Most protein-coding genes (87.79 %) were assigned to a putative function. Halotalea alkalilenta AW-7T encodes the catechol and protocatechuate degradation to β-ketoadipate via the β-ketoadipate and protocatechuate ortho-cleavage degradation pathway, and it possesses the genetic ability to detoxify fluoroacetate, cyanate and acrylonitrile. Lastly, an emended description of the genus Halotalea Ntougias et al. 2007 is also provided in order to describe the delayed fermentation ability of the type strain.« less

  16. High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea

    SciTech Connect (OSTI)

    Ntougias, Spyridon; Lapidus, Alla; Copeland, Alex; Reddy, T. B. K.; Pati, Amrita; Ivanova, Natalia N.; Markowitz, Victor M.; Klenk, Hans-Peter; Woyke, Tanja; Fasseas, Constantinos; Kyrpides, Nikos C.; Zervakis, Georgios I.

    2015-08-13

    Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and annotation of Halotalea alkalilenta AW-7T are described. The microorganism was sequenced as a part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project at the DOE Joint Genome Institute, and it is the only strain within the genus Halotalea having its genome sequenced. The genome is 4,467,826 bp long and consists of 40 scaffolds with 64.62 % average GC content. A total of 4,104 genes were predicted, comprising of 4,028 protein-coding and 76 RNA genes. Most protein-coding genes (87.79 %) were assigned to a putative function. Halotalea alkalilenta AW-7T encodes the catechol and protocatechuate degradation to β-ketoadipate via the β-ketoadipate and protocatechuate ortho-cleavage degradation pathway, and it possesses the genetic ability to detoxify fluoroacetate, cyanate and acrylonitrile. Lastly, an emended description of the genus Halotalea Ntougias et al. 2007 is also provided in order to describe the delayed fermentation ability of the type strain.

  17. Genomic Advances to Improve Biomass for Biofuels (LBNL Science at the Theater)

    ScienceCinema (OSTI)

    Rokhsar, Daniel

    2011-04-28

    Lawrence Berkeley National Lab bioscientist Daniel Rokhsar discusses genomic advances to improve biomass for biofuels. He presented his talk Feb. 11, 2008 in Berkeley, California as part of Berkeley Lab's community lecture series. Rokhsar works with the U.S. Department of Energy's Joint Genome Institute and Berkeley Lab's Genomics Division.

  18. Development of the Butt Joint for the ITER Central Solenoid

    SciTech Connect (OSTI)

    Martovetsky, N N

    2006-08-23

    The ITER Central Solenoid (CS) requires compact and reliable joints for its Cable-in-Conduit Conductor (CICC). The baseline design is a diffusion bonded butt joint. In such a joint the mating cables are compacted to a very low void fraction in a copper sleeve and then heat treated. After the heat treatment the ends are cut, polished and aligned against each other and then diffusion bonded under high compression in a vacuum chamber at 750 C. The jacket is then welded on the conductor to complete the joint, which remarkably does not require more room than a regular conductor. This joint design is based on a proven concept developed for the ITER CS Model Coil that was successfully tested in the previous R&D phase.

  19. DOE/LM-1469

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    DOE/LM-1469

  20. The Human Genome Initiative of the Department of Energy

    DOE R&D Accomplishments [OSTI]

    1988-01-01

    The structural characterization of genes and elucidation of their encoded functions have become a cornerstone of modern health research, biology and biotechnology. A genome program is an organized effort to locate and identify the functions of all the genes of an organism. Beginning with the DOE-sponsored, 1986 human genome workshop at Santa Fe, the value of broadly organized efforts supporting total genome characterization became a subject of intensive study. There is now national recognition that benefits will rapidly accrue from an effective scientific infrastructure for total genome research. In the US genome research is now receiving dedicated funds. Several other nations are implementing genome programs. Supportive infrastructure is being improved through both national and international cooperation. The Human Genome Initiative of the Department of Energy (DOE) is a focused program of Resource and Technology Development, with objectives of speeding and bringing economies to the national human genome effort. This report relates the origins and progress of the Initiative.

  1. FCTO Projects and the Materials Genome Initiative | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Projects and the Materials Genome Initiative FCTO Projects and the Materials Genome Initiative Download presentation slides from the DOE Fuel Cell Technologies Office webinar "Materials Genome Initiative" held on December 2, 2014. FCTO Projects and the Materials Genome Initiative Webinar Slides (4.28 MB) More Documents & Publications Vehicle Technologies Office Merit Review 2015: Lightweight Materials Overview Advanced Water Splitting Materials Workshop High Througput Combinatorial

  2. U.S.-Brazil Binational Joint Action Plan | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    -Brazil Binational Joint Action Plan U.S.-Brazil Binational Joint Action Plan U.S.-Brazil Binational Energy Working Group, formed on July 20, 2010, when DOE and the Brazilian Ministry of Mines and Energy signed a Joint Action Plan brazil_actionplan_7202010.pdf (1.41 MB) More Documents & Publications US - Brazil Binational Energy Working Group Joint Action Plan U.S.-Brazil Strategic Energy Dialogue Joint Report Summary of the meeting between the the United States of America and the Federative

  3. Gamesa Santana Joint Venture | Open Energy Information

    Open Energy Info (EERE)

    Gamesa Santana Joint Venture Place: Spain Sector: Wind energy Product: Wind turbine manufacturing joint venture in Spain. References: Gamesa Santana Joint Venture1 This article...

  4. Fueling the Future with Fungal Genomes

    SciTech Connect (OSTI)

    Grigoriev, Igor V.

    2014-10-27

    Genomes of fungi relevant to energy and environment are in focus of the JGI Fungal Genomic Program. One of its projects, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts and pathogens) and biorefinery processes (cellulose degradation and sugar fermentation) by means of genome sequencing and analysis. New chapters of the Encyclopedia can be opened with user proposals to the JGI Community Science Program (CSP). Another JGI project, the 1000 fungal genomes, explores fungal diversity on genome level at scale and is open for users to nominate new species for sequencing. Over 400 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics will lead to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such ‘parts’ suggested by comparative genomics and functional analysis in these areas are presented here.

  5. Double slotted socket spherical joint

    SciTech Connect (OSTI)

    Bieg, Lothar F.; Benavides, Gilbert L.

    2001-05-22

    A new class of spherical joints is disclosed. These spherical joints are capable of extremely large angular displacements (full cone angles in excess of 270.degree.), while exhibiting no singularities or dead spots in their range of motion. These joints can improve or simplify a wide range of mechanical devices.

  6. High-quality permanent draft genome sequence of Rhizobium sullae strain WSM1592; a Hedysarum coronarium microsymbiont from Sassari, Italy

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Yates, Ron; Howieson, John; De Meyer, Sofie E.; Tian, Rui; Seshadri, Rekha; Pati, Amrita; Woyke, Tanja; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; et al

    2015-07-24

    Rhizobium sullae strain WSM1592 is an aerobic, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen (N2) fixing root nodule formed on the short-lived perennial legume Hedysarum coronarium (also known as Sulla coronaria or Sulla). WSM1592 was isolated from a nodule recovered from H. coronarium roots located in Ottava, bordering Sassari, Sardinia in 1995. WSM1592 is highly effective at fixing nitrogen with H. coronarium, and is currently the commercial Sulla inoculant strain in Australia. Here we describe the features of R. sullae strain WSM1592, together with genome sequence information and its annotation. The 7,530,820 bp high-quality permanent draft genomemore » is arranged into 118 scaffolds of 118 contigs containing 7.453 protein-coding genes and 73 RNA-only encoding genes. In conclusion, this rhizobial genome is sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.« less

  7. Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)

    SciTech Connect (OSTI)

    Kappler, Ulrike; Davenport, Karen W.; Beatson, Scott; Lucas, Susan; Lapidus, Alla L.; Copeland, A; Berry, Kerrie W.; Glavina Del Rio, Tijana; Hammon, Nancy; Dalin, Eileen; Tice, Hope; Pitluck, Sam; Richardson, P M; Bruce, David; Goodwin, Lynne A.; Han, Cliff; Tapia, Roxanne; Detter, J. Chris; Chang, Yun-Juan; Jeffries, Cynthia; Land, Miriam L; Hauser, Loren John; Kyrpides, Nikos C; Goker, Markus; Ivanova, N; Klenk, Hans-Peter; Woyke, Tanja

    2012-01-01

    Starkeya novella (Starkey 1934) Kelly et al. 2000 is a member of the family Xanthobacteraceae in the order Rhizobiales , which is thus far poorly characterized at the genome level. Cultures from this spe- cies are most interesting due to their facultatively chemolithoautotrophic lifestyle, which allows them to both consume carbon dioxide and to produce it. This feature makes S. novella an interesting model or- ganism for studying the genomic basis of regulatory networks required for the switch between con- sumption and production of carbon dioxide, a key component of the global carbon cycle. In addition, S. novella is of interest for its ability to grow on various inorganic sulfur compounds and several C1- compounds such as methanol. Besides Azorhizobium caulinodans, S. novella is only the second spe- cies in the family Xanthobacteraceae with a completely sequenced genome of a type strain. The cur- rent taxonomic classification of this group is in significant conflict with the 16S rRNA data. The ge- nomic data indicate that the physiological capabilities of the organism might have been underestimat- ed. The 4,765,023 bp long chromosome with its 4,511 protein-coding and 52 RNA genes was se- quenced as part of the DOE Joint Genome Institute Community Sequencing Program (CSP) 2008.

  8. High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Ardley, Julie; Tian, Rui; O’Hara, Graham; Seshadri, Rekha; Reddy, T. B. K.; Pati, Amrita; Woyke, Tanja; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; et al

    2015-12-01

    We report that Ensifer medicae WSM244 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Medicago species. WSM244 was isolated in 1979 from a nodule recovered from the roots of the annual Medicago polymorpha L. growing in alkaline soil (pH 8.0) in Tel Afer, Iraq. WSM244 is the only acid-sensitive E. medicae strain that has been sequenced to date. It is effective at fixing nitrogen with M. polymorpha L., as well as with more alkaline-adapted Medicago spp. such as M. littoralis Loisel., M. scutellata (L.) Mill., M. tornata (L.)more » Mill. and M. truncatula Gaertn. This strain is also effective with the perennial M. sativa L. Here we describe the features of E. medicae WSM244, together with genome sequence information and its annotation. The 6,650,282 bp high-quality permanent draft genome is arranged into 91 scaffolds of 91 contigs containing 6,427 protein-coding genes and 68 RNA-only encoding genes, and is one of the rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal.« less

  9. High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil

    SciTech Connect (OSTI)

    Ardley, Julie; Tian, Rui; O’Hara, Graham; Seshadri, Rekha; Reddy, T. B. K.; Pati, Amrita; Woyke, Tanja; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; Howieson, John; Reeve, Wayne

    2015-12-01

    We report that Ensifer medicae WSM244 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Medicago species. WSM244 was isolated in 1979 from a nodule recovered from the roots of the annual Medicago polymorpha L. growing in alkaline soil (pH 8.0) in Tel Afer, Iraq. WSM244 is the only acid-sensitive E. medicae strain that has been sequenced to date. It is effective at fixing nitrogen with M. polymorpha L., as well as with more alkaline-adapted Medicago spp. such as M. littoralis Loisel., M. scutellata (L.) Mill., M. tornata (L.) Mill. and M. truncatula Gaertn. This strain is also effective with the perennial M. sativa L. Here we describe the features of E. medicae WSM244, together with genome sequence information and its annotation. The 6,650,282 bp high-quality permanent draft genome is arranged into 91 scaffolds of 91 contigs containing 6,427 protein-coding genes and 68 RNA-only encoding genes, and is one of the rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal.

  10. High-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Mhamdi, Ridha; Ardley, Julie; Tian, Rui; Seshadri, Rekha; Reddy, T. B. K.; Pati, Amrita; Woyke, Tanja; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; et al

    2015-07-02

    We report that Ensifer meliloti 4H41 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of common bean (Phaseolus vulgaris). Strain 4H41 was isolated in 2002 from root nodules of P. vulgaris grown in South Tunisia from the oasis of Rjim-Maatoug. Strain 4H41 is salt- and drought-tolerant and highly effective at fixing nitrogen with P. vulgaris. Here we describe the features of E. meliloti 4H41, together with genome sequence information and its annotation. The 6,795,637 bp high-quality permanent draft genome is arranged into 47 scaffolds of 47 contigs containing 6,350more » protein-coding genes and 72 RNA-only encoding genes, and is one of the rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal.« less

  11. Stochastic Joint Inversion for Integrated Data Interpretation in Geothermal Exploration

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Stochastic Joint Inversion for Integrated Data Interpretation in Geothermal Exploration Principal Investigator: Robert J. Mellors Lawrence Livermore National Laboratory Track 1: Geophysics Project Officer: Eric Hass Total Project Funding: $890,000 April 24, 2013 This presentation does not contain any proprietary confidential, or otherwise restricted information. Mandatory slide Data Flow models Subsurface permeability and temperatures 2 | US DOE Geothermal Office eere.energy.gov Relevance/Impact

  12. Italy Joint Statement

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    JOINT STATEMENT BY SECRETARY SPENCER ABRAHAM OF THE UNITED STATES OF AMERICA AND MINISTER ANTONIO MARZANO OF THE REPUBLIC OF ITALY ON COOPERATION IN ENERGY TECHNOLOGIES ROME, ITALY AUGUST , 2003 We affirm our commitment, on behalf of the United States of America and the Republic of Italy, to collaborate both bilaterally and multilaterally on accelerating the development of the hydrogen economy as part of our broadening cooperation on clean energy technologies. We aim to work together to enhance

  13. Electrolyte Genome - Joint Center for Energy Storage Research

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Electrofuels: Tiny Organisms Making a Big Impact Electrofuels: Tiny Organisms Making a Big Impact February 16, 2012 - 12:30pm Addthis Electrofuels: Tiny Organisms Making a Big Impact Alexa McClanahan Communications Support Contractor to ARPA-E They say a picture is worth a thousand words - but what happens when what you want to look at is impossible to see? That's where the Advanced Research Projects Agency-Energy's Electrofuels program comes in. The 13 projects that make up the program seek to

  14. Rooted in Wonder: Joint Genome Institute Study Reveals Amazing...

    Office of Environmental Management (EM)

    microbes that affect the growth of other plants (crops like corn or wheat) researchers ... microbes that affect the growth of other plants (crops like corn or wheat) researchers ...

  15. Department of Energy Joint Genome Institute, Walnut Creek, CA...

    Office of Scientific and Technical Information (OSTI)

    plant roots is a ubiquitous mutualism that plays key roles in plant nutrition, soil health, and carbon cycling. The symbiosis evolved repeatedly and independently as multiple...

  16. U.S. Department of Energy Joint Genome Institute

    Office of Scientific and Technical Information (OSTI)

    ... Cyanobacteria: A phylum of bacteria that obtain their energy through photosynthesis, and named for the color of the bacteria. Although often called blue-green algae, that name is a ...

  17. Formation of tough composite joints

    SciTech Connect (OSTI)

    Brun, M.K.

    1997-05-01

    Joints which exhibit tough fracture behavior were formed in a composite with a Si/SiC matrix reinforced with Textron SCS-6 fibers with either boron nitride or silicon nitride fiber coatings. In composites with BN coatings fibers were aligned uniaxially, while composites with Si{sub 3}N{sub 4}-coated fibers had a 0/90{degree} architecture. Lapped joints (joints with overlapping fingers) were necessary to obtain tough behavior. Geometrical requirements necessary to avoid brittle joint failure have been proposed. Joints with a simple overlap geometry (only a few fingers) would have to be very long in order to prevent brittle failure. Typical failure in these joints is caused by a crack propagating along the interfaces between the joint fingers. Joints of the same overall length, but with geometry changed to be symmetric about the joint centerline and with an extra shear surface exhibited tough fractures accompanied with extensive fiber pullout. The initial matrix cracking of these joints was relatively low because cracks propagated easily through the ends of the fingers. Joints with an optimized stepped sawtooth geometry produced composite-like failures with the stress/strain curves containing an elastic region followed by a region of rising stress with an increase of strain. Increasing the fiber/matrix interfacial strength from 9 to 25 MPa, by changing the fiber coating, increased matrix cracking and ultimate strength of the composite significantly. The best joints had matrix cracking stress and ultimate strength of 138 and 240 MPa, respectively. Joint failure was preceded by multiple matrix cracking in the entire composite. The high strength of the joints will permit building of structures containing joints with only a minor reduction of design stresses.

  18. DOE PAGES

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    February 2016 DOE Organization Chart - February 2016 The DOE Organization Chart is a diagram of the U.S. Department of Energy's structure along with the relationships and relative ranks of its parts and positions/jobs. DOECHART-NONAMES-2016-February-22.pdf (81.63 KB) More Documents & Publications DOE Organization Chart - January

    January 2016 DOE Organization Chart - January 2016 The DOE Organization Chart is a diagram of the U.S. Department of Energy's structure along with the

  19. DOC-DOE China Mission Announcement Press Release | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    China Mission Announcement Press Release DOC-DOE China Mission Announcement Press Release DOC-DOE China Mission Announcement Press Release DOC-DOE China Mission Announcement Press Release (34.5 KB) More Documents & Publications DOC-DOE Joint China Mission Statement China 2015 Business Development Mission Marketing Flyer DOE-LPO_Email-Update_001_Through_11

  20. United States -- Mexican joint ventures: A case history approach

    SciTech Connect (OSTI)

    Moore, N.L.; Chidester, R.J.; Hughes, K.R.; Fowler, R.A.

    1993-03-01

    Because the Mexican government has encouraged investment in Mexico by increasing the percentage of ownership of a Mexican business that a US company can hold, joint ventures are more attractive now than they had been in the past. This study provides preliminary information for US renewable energy companies who are interested in forming a joint venture with a Mexican company. This report is not intended to be a complete reference but does identifies a number of important factors that should be observed when forming a Mexican joint venture: (1)Successful joint ventures achieve the goals of each partner. (2)It is essential that all parties agree to the allocation of responsibilities. (3)Put everything in writing. (4)Research in depth the country or countries in which you are considering doing business.

  1. Safety Monitor Joint Working Group (JWG) Tour

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    4 th Meeting of the Joint Working Group of the U.S.-Japan Coordinating Committee of Fusion Energy on Safety in Inter-Institutional Collaborations (U.S.-Japan Safety Monitoring Program) Meeting in Japan, July 29-August 2, 2013 Submitted: October 16, 2013 Respectfully submitted to: Barry Sullivan Program Manager - ES&H U.S. DOE - Office of Fusion Energy Sciences Professor Kiyohiko Nishimura Head of Division for Health and Safety Management National Institute for Fusion Science Prepared by: Lee

  2. DOE F 2050.2A | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    A DOE F 2050.2A Form documents that joint inventors agree to sell their invention and all documentation to the U.S. Government for the sum of one dollar. PATENT ASSIGNMENT FORM (28.34 KB) More Documents & Publications DOE F 2050.2 DOE F 2000.4 Department of Energy Record of Invention Form

  3. Genomic Sequence Comparisons, 1987-2003 Final Report

    SciTech Connect (OSTI)

    George M. Church

    2004-07-29

    This project was to develop new DNA sequencing and RNA and protein quantitation methods and related genome annotation tools. The project began in 1987 with the development of multiplex sequencing (published in Science in 1988), and one of the first automated sequencing methods. This lead to the first commercial genome sequence in 1994 and to the establishment of the main commercial participants (GTC then Agencourt) in the public DOE/NIH genome project. In collaboration with GTC we contributed to one of the first complete DOE genome sequences, in 1997, that of Methanobacterium thermoautotropicum, a species of great relevance to energy-rich gas production.

  4. Stochastic Joint Inversion for Integrated Data Interpretation...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Stochastic Joint Inversion for Integrated Data Interpretation in Geothermal Exploration Stochastic Joint Inversion for Integrated Data Interpretation in Geothermal Exploration ...

  5. Evaluation of the Cow Rumen Metagenome; Assembly by Single Copy Gene Analysis and Single Cell Genome Assemblies(Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    ScienceCinema (OSTI)

    Sczyrba, Alex [DOE JGI

    2013-01-22

    DOE JGI's Alex Sczyrba on "Evaluation of the Cow Rumen Metagenome" and "Assembly by Single Copy Gene Analysis and Single Cell Genome Assemblies" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  6. DOE Patents

    Office of Scientific and Technical Information (OSTI)

    DOE Patents From the 1940's to today... A central collection of US Department of energy patent information Search For Terms: Find + Advanced Search Advanced Search All Fields: ...

  7. Phytozome: a Tool for Green Plant Comparative Genomics

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Phytozome is a joint project of the Department of Energy's Joint Genome Institute and the Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. Clusters of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These clusters allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release v4.0, Phytozome provides access to nine sequenced and annotated green plant genomes, eight of which have been clustered into gene families at six evolutionarily significant nodes. Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are hyper-linked and searchable. [Copied from the Overview at http://www.phytozome.net/Phytozome_info.php

  8. Final Report DOE Contract No. DE-FG36-04G014294 ICEKAP 2004: A Collaborative Joint Geophysical Imaging Project at Krafla and IDDP P.E. Malin, S.A. Onacha, E. Shalev Division of Earth and Ocean Sciences Nicholas School of the Environment Duke University Durham, NC 27708

    SciTech Connect (OSTI)

    Malin, Peter E.; Shalev, Eylon; Onacha, Stepthen A.

    2006-12-15

    In this final report, we discuss both theoretical and applied research resulting from our DOE project, ICEKAP 2004: A Collaborative Joint Geophysical Imaging Project at Krafla and IDDP. The abstract below begins with a general discussion of the problem we addressed: the location and characterization of blind geothermal resources using microearthquake and magnetotelluric measurements. The abstract then describes the scientific results and their application to the Krafla geothermal area in Iceland. The text following this abstract presents the full discussion of this work, in the form of the PhD thesis of Stephen A. Onacha. The work presented here was awarded the Best Geophysics Paper at the 2005 Geothermal Resources Council meeting, Reno. This study presents the modeling of buried fault zones using microearthquake and electrical resistivity data based on the assumptions that fluid-filled fractures cause electrical and seismic anisotropy and polarization. In this study, joint imaging of electrical and seismic data is used to characterize the fracture porosity of the fracture zones. P-wave velocity models are generated from resistivity data and used in locating microearthquakes. Fracture porosity controls fluid circulation in the hydrothermal systems and the intersections of fracture zones close to the heat source form important upwelling zones for hydrothermal fluids. High fracture porosity sites occur along fault terminations, fault-intersection areas and fault traces. Hydrothermal fault zone imaging using resistivity and microearthquake data combines high-resolution multi-station seismic and electromagnetic data to locate rock fractures and the likely presence fluids in high temperature hydrothermal systems. The depths and locations of structural features and fracture porosity common in both the MT and MEQ data is incorporated into a joint imaging scheme to constrain resistivity, seismic velocities, and locations of fracture systems. The imaging of the fault

  9. DOE-NE Light Water Reactor Sustainability Program and EPRI Long...

    Office of Environmental Management (EM)

    DOE-NE Light Water Reactor Sustainability Program and EPRI Long-Term Operations Program - Joint Research and Development Plan DOE-NE Light Water Reactor Sustainability Program and ...

  10. Computational Challenges for Microbial Genome and Metagenome Analysis (2010 JGI/ANL HPC Workshop)

    ScienceCinema (OSTI)

    Mavrommatis, Kostas

    2011-06-08

    Kostas Mavrommatis of the DOE JGI gives a presentation on "Computational Challenges for Microbial Genome & Metagenome Analysis" at the JGI/Argonne HPC Workshop on January 26, 2010.

  11. DOE Catalysis Working Group Meeting

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    16, 2014 Marriott Wardman Park Hotel 2660 Woodley Road NM, Washington, D.C. 8:30 - 9:00 Continental breakfast: breads, coffee, tea Joint Durability and Catalysis Working Groups Meeting Delaware A 9:00 - 9:05 Welcome & introductory comments DWG co-chairs - Debbie Myers (ANL), Rod Borup (LANL), Donna Ho (DOE); CWG co-chairs - Piotr Zelenay (LANL), Nancy Garland (DOE) 9:05 - 9:25 Are We There Yet? Pt-Alloy Catalyst - Anu Kongkanand (GM) 9:25 - 9:45 Pt-Co/C Catalysts: PEMFC Performance and

  12. DOE's effort to reduce truck aerodynamic drag : joint experiments...

    Office of Scientific and Technical Information (OSTI)

    Authors: Yaste, David M 1 ; Salari, Kambiz 2 ; Hammache, Mustapha 3 ; Browand, Fred 3 ; Pointer, W. David 4 ; Ortega, Jason M. 2 ; McCallen, Rose 2 ; Walker, Stephen ...

  13. DOE - NNSA/NFO -- News & Views Emergency Joint Exercise

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    part in a 1981 weapons accident training exercise, in Area 25 of the Nevada Test Site. The purpose of the exercise was to put into action a planned response to a nuclear accident. ...

  14. DOE and FERC Joint Public Statement on Back Stop Siting

    Broader source: Energy.gov [DOE]

    Washington, D.C. – U.S. Energy Secretary Steven Chu announced today his decision that the Department of Energy will work more closely with the Federal Energy Regulatory Commission (FERC) in...

  15. DOE Joint Solid-State Lighting Roundtables on Science Challenges

    Broader source: Energy.gov [DOE]

    Summary of an October 2014 meeting of LED experts to consider opportunities for further advancement of SSL technology through coordinated R&D actions. (20 pages, November 2014)

  16. DOE Joint Solid State Lighting Roundtables on Science Challenges

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    U.S. Department of Energy Prepared By: LED Lighting Advisors Navigant Consulting, Inc. ......... 2 2. LED Critical R&D Challenges ...

  17. DOE-EERE/NIST Joint Workshop on Combinatorial Materials Science...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    half-day sessions were focused on discovery of hydrogen storage materials, one half-day session on fuel cell membranes, and one half-day session on organic photovoltaic materials. ...

  18. Metal to ceramic sealed joint

    DOE Patents [OSTI]

    Lasecki, J.V.; Novak, R.F.; McBride, J.R.

    1991-08-27

    A metal to ceramic sealed joint which can withstand wide variations in temperature and maintain a good seal is provided for use in a device adapted to withstand thermal cycling from about 20 to about 1000 degrees C. The sealed joint includes a metal member, a ceramic member having an end portion, and an active metal braze forming a joint to seal the metal member to the ceramic member. The joint is positioned remote from the end portion of the ceramic member to avoid stresses at the ends or edges of the ceramic member. The sealed joint is particularly suited for use to form sealed metal to ceramic joints in a thermoelectric generator such as a sodium heat engine where a solid ceramic electrolyte is joined to metal parts in the system. 11 figures.

  19. Metal to ceramic sealed joint

    DOE Patents [OSTI]

    Lasecki, John V.; Novak, Robert F.; McBride, James R.

    1991-01-01

    A metal to ceramic sealed joint which can withstand wide variations in temperature and maintain a good seal is provided for use in a device adapted to withstand thermal cycling from about 20 to about 1000 degrees C. The sealed joint includes a metal member, a ceramic member having an end portion, and an active metal braze forming a joint to seal the metal member to the ceramic member. The joint is positioned remote from the end portion of the ceramic member to avoid stresses at the ends or edges of the ceramic member. The sealed joint is particularly suited for use to form sealed metal to ceramic joints in a thermoelectric generator such as a sodium heat engine where a solid ceramic electrolyte is joined to metal parts in the system.

  20. Technical status of the Dish/Stirling Joint Venture Program

    SciTech Connect (OSTI)

    Bean, J.R.; Diver, R.B.

    1995-06-01

    Initiated in 1991; the Dish/Stirling Joint Venture Program (DSJVP) is a 5-year, $17.2 million joint venture which is funded by Cummins Power Generation, Inc. (CPG) of Columbus, Indiana and the United States Department of Energy`s (DOE) Solar Thermal and Biomass Power Division. Sandia National Laboratories administers and provides technical management for this contract on the DOE`s behalf. In January, 1995; CPG advanced to Phase 3 of this three-phase contract. The objective of the DSJVP is to develop and commercialize a 7-kW. Dish/Stirling System for remote power markets by 1997. In this paper, the technical status of the major subsystems which comprise the CPG 7-kW{sub e} Dish/Stirling System is presented. These subsystems include the solar concentrator, heat pipe receiver, engine/alternator, power conditioning, and automatic controls.

  1. DOE F

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    242.1 (12-2014) U.S. DEPARTMENT OF ENERGY Forms Manager Designation SECTION I. Designation Information Pursuant to DOE Guide 242.1-1, Forms Management Guide, (Name) _______________________________________________ is hereby designated a Forms Manager for (DOE Organization/Contractor Activity) ____________________________________________________________________. The incumbent's responsibilities include providing guidance and assisting within their respective organizations, supporting applicable

  2. PNNL: About PNNL - Joint Appointments

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Yong Wang Dunning leads the Northwest Institute for Advanced Computing, a partnership of PNNL and the University of Washington. Joint Appointments PNNL seeks opportunities to build...

  3. Mechanisms of degradation in adhesive joint strength: Glassy polymer thermoset bond in a humid environment

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Kropka, Jamie Michael; Adolf, Douglas Brian; Spangler, Scott Wilmer; Austin, Kevin N.; Chambers, Robert S.

    2015-08-06

    The degradation in the strength of napkin-ring (NR) joints bonded with an epoxy thermoset is evaluated in a humid environment. While adherend composition (stainless steel and aluminum) and surface preparation (polished, grit blasted, primed, coupling agent coated) do not affect virgin (time=0) joint strength, they can significantly affect the role of moisture on the strength of the joint. Adherend surface abrasion and corrosion processes are found to be key factors in determining the reliability of joint strength in humid environments. In cases where surface specific joint strength degradation processes are not active, decreases in joint strength can be accounted formore » by the glass transition temperature, Tg, depression of the adhesive associated with water sorption. Under these conditions, joint strength can be rejuvenated to virgin strength by drying. In addition, the decrease in joint strength associated with water sorption can be predicted by the Simplified Potential Energy Clock (SPEC) model by shifting the adhesive reference temperature, Tref, by the same amount as the Tg depression. When surface specific degradation mechanisms are active, they can reduce joint strength below that associated with adhesive Tg depression, and joint strength is not recoverable by drying. Furthermore, a critical relative humidity (or, potentially, critical water sorption concentration), below which the surface specific degradation does not occur, appears to exist for the polished stainless steel joints.« less

  4. Mechanisms of degradation in adhesive joint strength: Glassy thermoset polymer bond in a humid environment

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Kropka, Jamie Michael; Adolf, Douglas Brian; Spangler, Scott Wilmer; Austin, Kevin N.; Chambers, Robert S.

    2015-08-06

    The degradation in the strength of napkin-ring (NR) joints bonded with an epoxy thermoset is evaluated in a humid environment. While adherend composition (stainless steel and aluminum) and surface preparation (polished, grit blasted, primed, coupling agent coated) do not affect virgin (time=0) joint strength, they can significantly affect the role of moisture on the strength of the joint. Adherend surface abrasion and corrosion processes are found to be key factors in determining the reliability of joint strength in humid environments. In cases where surface specific joint strength degradation processes are not active, decreases in joint strength can be accounted formoreby the glass transition temperature, Tg, depression of the adhesive associated with water sorption. Under these conditions, joint strength can be rejuvenated to virgin strength by drying. In addition, the decrease in joint strength associated with water sorption can be predicted by the Simplified Potential Energy Clock (SPEC) model by shifting the adhesive reference temperature, Tref, by the same amount as the Tg depression. When surface specific degradation mechanisms are active, they can reduce joint strength below that associated with adhesive Tg depression, and joint strength is not recoverable by drying. Furthermore, a critical relative humidity (or, potentially, critical water sorption concentration), below which the surface specific degradation does not occur, appears to exist for the polished stainless steel joints.less

  5. Mechanisms of degradation in adhesive joint strength: Glassy polymer thermoset bond in a humid environment

    SciTech Connect (OSTI)

    Kropka, Jamie Michael; Adolf, Douglas Brian; Spangler, Scott Wilmer; Austin, Kevin N.; Chambers, Robert S.

    2015-08-06

    The degradation in the strength of napkin-ring (NR) joints bonded with an epoxy thermoset is evaluated in a humid environment. While adherend composition (stainless steel and aluminum) and surface preparation (polished, grit blasted, primed, coupling agent coated) do not affect virgin (time=0) joint strength, they can significantly affect the role of moisture on the strength of the joint. Adherend surface abrasion and corrosion processes are found to be key factors in determining the reliability of joint strength in humid environments. In cases where surface specific joint strength degradation processes are not active, decreases in joint strength can be accounted for by the glass transition temperature, Tg, depression of the adhesive associated with water sorption. Under these conditions, joint strength can be rejuvenated to virgin strength by drying. In addition, the decrease in joint strength associated with water sorption can be predicted by the Simplified Potential Energy Clock (SPEC) model by shifting the adhesive reference temperature, Tref, by the same amount as the Tg depression. When surface specific degradation mechanisms are active, they can reduce joint strength below that associated with adhesive Tg depression, and joint strength is not recoverable by drying. Furthermore, a critical relative humidity (or, potentially, critical water sorption concentration), below which the surface specific degradation does not occur, appears to exist for the polished stainless steel joints.

  6. CRUCIFORM CONTROL ROD JOINT

    DOE Patents [OSTI]

    Thorp, A.G. II

    1962-08-01

    An invention is described which relates to nuclear reactor control rod components and more particularly to a joint between cruciform control rod members and cruciform control rod follower members. In one embodiment this invention provides interfitting crossed arms at adjacent ends of a control rod and its follower in abutting relation. This holds the members against relative opposite longitudinal movement while a compression member keys the arms against relative opposite rotation around a common axis. Means are also provided for centering the control rod and its follower on a common axis and for selectively releasing the control rod from its follower for the insertion of a replacement of the control rod and reuse of the follower. (AEC)

  7. OSTIblog Articles in the human genome Topic | OSTI, US Dept of...

    Office of Scientific and Technical Information (OSTI)

    genome Topic 100th DOE R&D Accomplishments Feature Page Celebration by Linda McBrearty 07 Jul, 2013 in Products and Content 7566 Accomp100slide.preview.jpg 100th DOE R&D ...

  8. Negotiating equity for management of DOE wastes

    SciTech Connect (OSTI)

    Carnes, S.A.

    1994-09-01

    One important factor frustrating optimal management of Department of Energy (DOE)-complex wastes is the inability to use licensed and permitted facilities systematically. Achieving the goal of optimal use of DOE`s waste management facilities is politically problematic for two reasons. First, no locale wants to bear a disproportionate burden from DOE wastes. Second, the burden imposed by additional wastes transported from one site to another is difficult to characterize. To develop a viable framework for equitably distributing these burdens while achieving efficient use of all DOE waste management facilities, several implementation and equity issues must be addressed and resolved. This paper discusses stakeholder and equity issues and proposes a framework for joint research and action that could facilitate equity negotiations among stakeholder and move toward a more optimal use of DOE`s waste management capabilities.

  9. Statement from Secretary Moniz on Implementation Day for the Joint

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Comprehensive Plan of Action | Department of Energy Statement from Secretary Moniz on Implementation Day for the Joint Comprehensive Plan of Action Statement from Secretary Moniz on Implementation Day for the Joint Comprehensive Plan of Action January 16, 2016 - 5:07pm Addthis News Media Contact (202) 586-4940 DOENews@hq.doe.gov Implementation Day is a milestone in the effort to ensure that Iran's nuclear program is exclusively peaceful in nature by blocking potential pathways to a bomb. As

  10. OSTIblog Articles in the DOE Research & Development (R&D) Accomplishme...

    Office of Scientific and Technical Information (OSTI)

    As the individual responsible for the growth and development of this Web product, the ... DOE technical reports and additional web sites relating to the Human Genome initiative. ...

  11. GSA and DOE Seek Innovative Building Technologies | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    GSA and DOE Seek Innovative Building Technologies GSA and DOE Seek Innovative Building Technologies October 14, 2015 - 2:33pm Addthis GSA and DOE Seek Innovative Building Technologies To submit your technology, complete our request for information (RFI) by Friday, December 11, 2015. GSA's Green Proving Ground (GPG) program and DOE's High Impact Technology (HIT) Catalyst have issued a joint Request for Information calling for innovative emerging building technologies that can cost-effectively

  12. Standards in Genomic Science: An Open-Access Journal of the Genomic Standards Consortium (GSC8 Meeting)

    ScienceCinema (OSTI)

    Garrity, George

    2011-06-03

    George Garrity of Michigan State University talks about the GSC's open-access journal SIGS at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

  13. Genome Assembly Forensics: Metrics for Assessing Assembly Correctness (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    ScienceCinema (OSTI)

    Pop, Mihai [University of Maryland

    2013-01-22

    University of Maryland's Mihai Pop on "Genome Assembly Forensics: Metrics for Assessing Assembly Correctness" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  14. Sequencing Single Cell Microbial Genomes with Microfluidic Amplifications Tools (MICW - Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    ScienceCinema (OSTI)

    Quake, Steve [University of Stanford

    2013-01-22

    Stanford University's Steve Quake on "Sequencing Single Cell Microbial Genomes with Microfluidic Amplification Tools" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  15. DOE Reports

    Broader source: Energy.gov [DOE]

    10 CFR Part 63, YMRP, and Yucca Mountain Repository License Application Cross Reference Matrix. (pdf)Note: Primary Reference Documents Disk 1 and Disk 2 filescan be received by contacting the DOE...

  16. Shock transmissibility of threaded joints

    SciTech Connect (OSTI)

    Hansen, N.R.; Bateman, V.I.; Brown, F.A.

    1996-12-31

    Sandia National Laboratories (SNL) designs mechanical systems with threaded joints that must survive high shock environments. These mechanical systems include penetrators that must survive soil and rock penetration; drilling pipe strings that must survive rock-cutting, shock environments; and laydown weapons that must survive delivery impact shock. This paper summarizes an analytical study and an experimental evaluation of compressive, one-dimensional, shock transmission through a threaded joint in a split Hopkinson bar configuration. Thread geometries were scaled to simulate large diameter threaded joints with loadings parallel to the axis of the threads. Both strain and acceleration were evaluated with experimental measurements and analysis. Analytical results confirm the experimental conclusions that in this split Hopkinson bar configuration, the change in the one-dimensional shock wave by the threaded joint is localized to a length equal to a few diameters` length beyond the threaded joint.

  17. Method of forming a joint

    DOE Patents [OSTI]

    Butt, Darryl Paul; Cutler, Raymond Ashton; Rynders, Steven Walton; Carolan, Michael Francis

    2006-08-22

    A method of joining at least two sintered bodies to form a composite structure, including providing a first multicomponent metallic oxide having a perovskitic or fluorite crystal structure; providing a second sintered body including a second multicomponent metallic oxide having a crystal structure of the same type as the first; and providing at an interface a joint material containing at least one metal oxide containing at least one metal identically contained in at least one of the first and second multicomponent metallic oxides. The joint material is free of cations of Si, Ge, Sn, Pb, P and Te and has a melting point below the sintering temperatures of both sintered bodies. The joint material is heated to a temperature above the melting point of the metal oxide(s) and below the sintering temperatures of the sintered bodies to form the joint. Structures containing such joints are also disclosed.

  18. DOE-HDBK-1163-2003

    Broader source: Energy.gov [DOE]

    Integration of Multiple Hazard Analysis Requirements and Activities During Fiscal Year 2001, the joint DOE/EFCOG Chemical Safety Topical Committee (CSTC) formed a team consisting of representatives from several sites and DOE headquarters to evaluate possible methods for integrating hazard analysis activities with potential overlap such as radiological, chemical, emergency preparedness, environmental and others. The CSTC Team identified and reviewed hazard analysis requirements and issues, collected numerous sources of good practices information and evaluated possible methods for integrating hazard analysis activities.

  19. Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum

    SciTech Connect (OSTI)

    Ditty, Jayna L.; Kvaal, Christopher A.; Goodner, Brad; Freyermuth, Sharyn K.; Bailey, Cheryl; Britton, Robert A.; Gordon, Stuart G.; Heinhorst, Sabine; Reed, Kelynne; Xu, Zhaohui; Sanders-Lorenz, Erin R.; Axen, Seth; Kim, Edwin; Johns, Mitrick; Scott, Kathleen; Kerfeld, Cheryl A.

    2011-08-01

    courses or independent research projects requires infrastructure for organizing and assessing student work. Here, we present a new platform for faculty to keep current with the rapidly changing field of bioinformatics, the Integrated Microbial Genomes Annotation Collaboration Toolkit (IMG-ACT). It was developed by instructors from both research-intensive and predominately undergraduate institutions in collaboration with the Department of Energy-Joint Genome Institute (DOE-JGI) as a means to innovate and update undergraduate education and faculty development. The IMG-ACT program provides a cadre of tools, including access to a clearinghouse of genome sequences, bioinformatics databases, data storage, instructor course management, and student notebooks for organizing the results of their bioinformatic investigations. In the process, IMG-ACT makes it feasible to provide undergraduate research opportunities to a greater number and diversity of students, in contrast to the traditional mentor-to-student apprenticeship model for undergraduate research, which can be too expensive and time-consuming to provide for every undergraduate. The IMG-ACT serves as the hub for the network of faculty and students that use the system for microbial genome analysis. Open access of the IMG-ACT infrastructure to participating schools ensures that all types of higher education institutions can utilize it. With the infrastructure in place, faculty can focus their efforts on the pedagogy of bioinformatics, involvement of students in research, and use of this tool for their own research agenda. What the original faculty members of the IMG-ACT development team present here is an overview of how the IMG-ACT program has affected our development in terms of teaching and research with the hopes that it will inspire more faculty to get involved.

  20. Italy Joint Statement | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Italy Joint Statement Italy Joint Statement " U.S.-Italy Joint Statement prepared as part of the International Partnership for a Hydrogen Economy " italy_joint_statement.pdf (63.17 KB) More Documents & Publications (Energy Efficiency) Joint Statement by Energy Ministers of G8, The People's Republic of China, India and The Republic of Korea (June 2008) Joint Statement by Energy Ministers of G8, The People's Republic of China, India and The Republic of Korea

  1. A Taste of Algal Genomes from the Joint Genome Institute Kuo...

    Office of Scientific and Technical Information (OSTI)

    Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and economic costs through toxic blooms, provide models for the study of symbiosis,...

  2. A Taste of Algal Genomes from the Joint Genome Institute (Conference...

    Office of Scientific and Technical Information (OSTI)

    Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and economic costs through toxic blooms, provide models for the study of symbiosis,...

  3. Russian Health Studies Program - Joint Coordinating Committee...

    Broader source: Energy.gov (indexed) [DOE]

    Joint Coordinating Committee for Radiation Effects Research (JCCRER) All About the Joint Coordinating Committee for Radiation Effects Research What is the JCCRER? Why is it ...

  4. Climate Leaders Joint Venture | Open Energy Information

    Open Energy Info (EERE)

    Leaders Joint Venture Jump to: navigation, search Name: Climate Leaders' Joint Venture Place: Dallas, Texas Product: Tudor Investment and Camco International have partnered to...

  5. Malibu Joint Venture | Open Energy Information

    Open Energy Info (EERE)

    Malibu Joint Venture Jump to: navigation, search Name: Malibu Joint Venture Place: Germany Sector: Solar Product: String representation "German utility ... e of next year." is too...

  6. Joint Outreach Task Group Video Series | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Video Series Joint Outreach Task Group Video Series The purpose of this video series is to provide an overview of the roles and responsibilities of the federal government offices and entities involved in the Energy Employees Occupational Illness Compensation Program Act (EEOIOCPA) and the Former Worker Medical Screening Program (FWP), two programs that serve eligible workers from the Department of Energy (DOE). In the interest of combining resources, since both the EEOICPA and FWP serve a

  7. Joint Meeting on Hydrogen Delivery Modeling and Analysis | Department of

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Energy Meeting on Hydrogen Delivery Modeling and Analysis Joint Meeting on Hydrogen Delivery Modeling and Analysis On May 8-9, 2007, the U.S. Department of Energy (DOE) held a meeting to review current and ongoing hydrogen delivery analysis models and related analysis work. The presentations served as a springboard for discussions on modeling assumptions, gaps, and future needs. Participants discussed proposed changes to the H2A delivery models. The discussion focused on incorporating

  8. WTP Safety Culture Advice Joint Topic (HSEP/TWC)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    January 2012 v1 Page 1 of 2 Note: The views expressed in committee meetings should not be considered a substitute for full HAB consensus on any particular issue. WTP Safety Culture Advice Joint Topic (HSEP/TWC) Framing questions for discussion regarding DOE's recently released Implementation Plan: Re: Secretary Chu's response to the DNFSB with the Implementation Plan for Recommendation 2011-1 (December 27, 2011) Note: The ORP coordinator for the DOE Response to DNFSB 2011-1 is Steve Pfaff. o

  9. Vehicle Technologies Office Merit Review 2014: Joint Development and Coordination of Emissions Control Data and Models (CLEERS Analysis and Coordination)

    Broader source: Energy.gov [DOE]

    Presentation given by Oak Ridge National Laboratory at 2014 DOE Hydrogen and Fuel Cells Program and Vehicle Technologies Office Annual Merit Review and Peer Evaluation Meeting about the joint...

  10. DOE-HDBK-1139/3-03

    Office of Energy Efficiency and Renewable Energy (EERE)

    Chemical Management (Volume 3 of 3) This Department of Energy Handbook was prepared under the sponsorship of the joint Department of Energy (DOE)/Energy Facility Contractors Group (EFCOG) Chemical Safety Topical Committee (CSTC). It was prepared over a span of four years by the CSTC’s Chemical User Safety and Health Requirements Roadmap team (the CUSHR team), consisting of representatives from several sites and DOE headquarters, chaired by Dr. Dave Quigley, Idaho National Engineering and Environmental Laboratory and co-chaired by Mr. James Morgan, Westinghouse Savannah River Company and Ms. Gail Kleiner, DOE/EH-52.

  11. DOE Durability Working Group Meeting Agenda

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    DOE Durability Working Group Meeting Monday, June 16, 2014, 9:00 am to 12:00 pm Washington Marriott Wardman Park 2660 Woodley Road NW Washington, D.C. 8:30 am Continental "breakfast": breakfast breads, coffee, and tea 9:00 am Joint Durability and Catalysis Working Groups Meeting (Delaware A Room) Welcome and introductory comments Debbie Myers (Argonne), Rod Borup (LANL), Donna Ho (DOE), Piotr Zelenay (LANL), and Nancy Garland (DOE) co-chairs of Durability and Catalysis Working Groups

  12. Investigation of Turn-of-Nut Method for Slip-Critical Joints of Aluminum Using A325 Bolts

    SciTech Connect (OSTI)

    Luttrell, C R

    1998-01-01

    Slip-critical bolted joints will be used to join aluminum bridge deck sections by Reynolds Metals Company (RMC). To help ensure that a joint does not slip the proper bolt clamping force to achieve what is known as a friction connection must be determined.

  13. In the OSTI Collections: Genomics | OSTI, US Dept of Energy Office of

    Office of Scientific and Technical Information (OSTI)

    Scientific and Technical Information Genomics Dr. Watson computer sleuthing scientist. Article Acknowledgement: Dr. William N. Watson, Physicist DOE Office of Scientific and Technical Information Energy and environment Prochlorococcus, Vibrio, Shewanella New technology Structural genomics References Reports Available through OSTI's SciTech Connect Reports Available through OSTI's DOepatents Additional References Genomics is a subfield of genetics that deals with an organism's genome, or

  14. DOE-0342

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Revision 2A Hanford Site Chronic Beryllium Disease Prevention Program (CBDPP) Date Published _________________ Prepared for the U.S. Department of Energy Assistant Secretary for Environmental Management P.O. Box 550 Richland, Washington 99352 Release Approval Date By Janis D. Aardal at 9:28 am, May 14, 2014 Approved for Public Release; Further Dissemination Unlimited DOE-0342, Rev. 2A Hanford Site Chronic Beryllium Disease Prevention Program (CBDPP) Published Date: 09-19-2013 Effective Date:

  15. DOE-0344

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    4 Revision 3A Hanford Site Excavating, Trenching and Shoring Procedure (HSETSP) Prepared for the U.S. Department of Energy Assistant Secretary for Environmental Management Approved for Public Release; Further Dissemination Unlimited DOE-0344, Rev. 3A Hanford Site Excavating, Trenching, and Shoring Procedure (HSETSP) Published Date: 10-30-2013 Effective Date: 11-29-2013 Change Summary Page 1 of 2 CHANGE SUMMARY Justification for revision: This revision is to allow for the use of an automated

  16. DOE-0400

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    400 Revision 0 Hanford Site-Wide Employee Concerns Program Procedure Prepared for the U.S. Department of Energy Assistant Secretary for Environmental Management Approved for Public Release; Further Dissemination Unlimited DOE-0400, Rev. 0 Hanford Site-Wide Employee Concerns Program Procedure Published Date: 10-29-2013 Effective Date: 11-27-2013 ii CHANGE SUMMARY Revision # Date/Section Changed Change Details 0 7/23/2013 Initial Issue developed by the Employee Concerns Committee, composed of

  17. DOE Patents

    Broader source: All U.S. Department of Energy (DOE) Office Webpages

    PATENTS Toggle Navigation Home About DOEpatents FAQ Contact Us DOE Patents From the 1940's to today... A central collection of US Department of energy patent information Search For Terms: Find + Advanced Search × Advanced Search All Fields: Patent Title: Abstract: Assignee: Inventor(s): Name Name ORCID Search Authors Patent Number: Patent Application Number: Contract Number: Subject: Lab/Technology Center: Sponsoring Office: Issue Date: to Sort: Relevance (highest to lowest) Publication Date

  18. DOE - NNSA/NFO -- News

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    News NNSA/NFO Language Options U.S. DOE/NNSA - Nevada Field Office News Releases News releases on events occurring at the NNSA Nevada Field Office or the Nevada National Security Site are produced by the Office of Public Affairs. All releases include contact information for the public affairs officer who produced the release. The current calendar year News Releases are listed below. THIS IS AN EXERCISE INCIDENT AT NEVADA NATIONAL SECURITY SITE THIS IS AN EXERCISE North Las Vegas - A Joint

  19. Genome Science/Technologies

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genome Genome Science/Technologies Los Alamos using cutting-edge sequencing, finishing, and analysis, impact valuable genomic data. Srinivas Iyer Bioscience Group Leader Email Get Expertise David Bruce Bioscience Deputy Group Leader Email Momchilo Vuyisich Scientist Email Rebecca McDonald Bioscience Communications Email State-of-the art technology and extensive genomics expertise Protein research Read caption + Los Alamos National Laboratory graduate student, Patricia Langan, changes the

  20. DOEs Effort to Reduce Truck Aerodynamic Drag through Joint...

    Energy Savers [EERE]

    Technologies Office Plug-in Electric Vehicles & Batteries Fuel Efficiency & Emissions Alternative Fuels Modeling, Testing, Data & Results Education & Workforce Development...

  1. Accommodations for Joint Facilities User Forum on Data-Intensive Computing

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    & HPCOR Accommodations Accommodations for Joint Facilities User Forum on Data-Intensive Computing & HPCOR Both the Joint Facilities User Forum on Data-Intensive Computing and the DOE HPCOR meetings are being held in downtown Oakland, CA. We have reserved room blocks at two locations in Berkeley, CA. We recommend making your reservations as soon as possible because hotel rooms in the San Francisco Bay Area are in great demand. Hotel Shattuck Plaza Reservation cutoff date is May 23,

  2. The human genome project

    SciTech Connect (OSTI)

    Yager, T.D.; Zewert, T.E.; Hood, L.E. )

    1994-04-01

    The Human Genome Project (HGP) is a coordinated worldwide effort to precisely map the human genome and the genomes of selected model organisms. The first explicit proposal for this project dates from 1985 although its foundations (both conceptual and technological) can be traced back many years in genetics, molecular biology, and biotechnology. The HGP has matured rapidly and is producing results of great significance.

  3. DOE, USDA Announce Funding for Biomass Research and Development Initiative

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    | Department of Energy DOE, USDA Announce Funding for Biomass Research and Development Initiative DOE, USDA Announce Funding for Biomass Research and Development Initiative May 6, 2010 - 12:00am Addthis Washington, DC - The U.S. Departments of Energy (DOE) and Agriculture (USDA) today jointly announced up to $33 million in funding for research and development of technologies and processes to produce biofuels, bioenergy and high-value biobased products, subject to annual appropriations. These

  4. Genomic Data and Annotation from the SEED

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Fonstein, Michael; Kogan, Yakov; Osterman, Andrei; Overbeek, Ross; Vonstein, Veronika The Fellowship for Interpretation of Genomes (FIG)

    The SEED Project has been extended to support metagenomic samples and concomitant analytical tools. Moreover, the number of genomes being introduced into SEED is growing very rapidly. Building a framework to support this growth while providing highly accurate annotations is centrally important to SEED. The projects subsystem-based annotation strategy has become the technological foundation for addressing these challenges.(copied from Appendix 7 of Systems Biology Knowledgebase for a New Era in Biology, A Genomics:GTL Report from the May 2008 Workshop, DOE/SC-0113, Grequrick, S; Fredrickson, J.K.; Stevens, R., Pub March 1, 2009.)

  5. Human Genome Education Program

    SciTech Connect (OSTI)

    Richard Myers; Lane Conn

    2000-05-01

    The funds from the DOE Human Genome Program, for the project period 2/1/96 through 1/31/98, have provided major support for the curriculum development and field testing efforts for two high school level instructional units: Unit 1, ''Exploring Genetic Conditions: Genes, Culture and Choices''; and Unit 2, ''DNA Snapshots: Peaking at Your DNA''. In the original proposal, they requested DOE support for the partial salary and benefits of a Field Test Coordinator position to: (1) complete the field testing and revision of two high school curriculum units, and (2) initiate the education of teachers using these units. During the project period of this two-year DOE grant, a part-time Field-Test Coordinator was hired (Ms. Geraldine Horsma) and significant progress has been made in both of the original proposal objectives. Field testing for Unit 1 has occurred in over 12 schools (local and non-local sites with diverse student populations). Field testing for Unit 2 has occurred in over 15 schools (local and non-local sites) and will continue in 12-15 schools during the 96-97 school year. For both curricula, field-test sites and site teachers were selected for their interest in genetics education and in hands-on science education. Many of the site teachers had no previous experience with HGEP or the unit under development. Both of these first-year biology curriculum units, which contain genetics, biotechnology, societal, ethical and cultural issues related to HGP, are being implemented in many local and non-local schools (SF Bay Area, Southern California, Nebraska, Hawaii, and Texas) and in programs for teachers. These units will reach over 10,000 students in the SF Bay Area and continues to receive support from local corporate and private philanthropic organizations. Although HGEP unit development is nearing completion for both units, data is still being gathered and analyzed on unit effectiveness and student learning. The final field testing result from this analysis will

  6. Connecting Genomic Alterations to Cancer Biology with Proteomics: The NCI Clinical Proteomic Tumor Analysis Consortium

    SciTech Connect (OSTI)

    Ellis, Matthew; Gillette, Michael; Carr, Steven A.; Paulovich, Amanda G.; Smith, Richard D.; Rodland, Karin D.; Townsend, Reid; Kinsinger, Christopher; Mesri, Mehdi; Rodriguez, Henry; Liebler, Daniel

    2013-10-03

    The National Cancer Institute (NCI) Clinical Proteomic Tumor Analysis Consortium is applying the latest generation of proteomic technologies to genomically annotated tumors from The Cancer Genome Atlas (TCGA) program, a joint initiative of the NCI and the National Human Genome Research Institute. By providing a fully integrated accounting of DNA, RNA, and protein abnormalities in individual tumors, these datasets will illuminate the complex relationship between genomic abnormalities and cancer phenotypes, thus producing biologic insights as well as a wave of novel candidate biomarkers and therapeutic targets amenable to verifi cation using targeted mass spectrometry methods.

  7. DOE Form

    National Nuclear Security Administration (NNSA)

    /1991) PROJECT: U.S. Department of Energy Requirements Change Notice Baseline List of Required Compliance Documents CONTRACTOR: Babcock & Wilcox Technical Services Y-12, LLC CONTRACT NO.: DE-AC05-000R22800, I.85 , Laws, Regulations, and DOE Directives (December 2000), DEAR 970.5204-2 No.: NNSA-50 Page 1 of 36 Pages LOCATION: Oak Ridge, Tennessee DATE OF CONTRACT: August 31 , 2000 This Requirements Change Notice (RCN) No. NNSA-50 incorporates, into Section J, Attachment E, Contract No.

  8. DOE Form

    National Nuclear Security Administration (NNSA)

    11991) PROJECT: U.S. Department of Energy Requirements Change Notice Baseline List of Required Compliance Documents CONTRACTOR: Babcock & Wilcox Technical Services Y-12, LLC CONTRACT NO. : DE-AC05-000R22800, 1.85, Laws, Regulations, and DOE Directives (December 2 000), DEAR 970.5204-2 COR-NP0-60 ESH-6.6.2013-515290 No.: NNSA-51 Page 1 of 34 Pages LOCATION : Oak Ridge, Tennessee DATE OF CONTRACT: August 31, 2000 This Requirements Change Notice (RCN) No. NNSA-51 incorporates, into Section J,

  9. Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Brumm, Phillip; Land, Miriam L.; Hauser, Loren J.; Jeffries, Cynthia D.; Chang, Yun-Juan; Mead, David A.

    2015-10-19

    Geobacillus sp. Y412MC52 was isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. The genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2011 (CP002835). Based on 16S rRNA genes and average nucleotide identity, Geobacillus sp. Y412MC52 and the related Geobacillus sp. Y412MC61 appear to be members of a new species of Geobacillus. The genome of Geobacillus sp. Y412MC52 consists of one circular chromosome of 3,628,883 bp, an average G+C content of 52 % and one circular plasmid of 45,057 bp andmore » an average G+C content of 45 %. Y412MC52 possesses arabinan, arabinoglucuronoxylan, and aromatic acid degradation clusters for degradation of hemicellulose from biomass. Lastly, transport and utilization clusters are also present for other carbohydrates including starch, cellobiose, and α- and β-galactooligosaccharides.« less

  10. Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Brumm, Phillip J.; Land, Miriam L.; Mead, David A.

    2015-10-05

    Geobacillus thermoglucosidasius C56-YS93 was one of several thermophilic organisms isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. Comparison of 16 S rRNA sequences confirmed the classification of the strain as a G. thermoglucosidasius species. The genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2011 (CP002835). The genome of G. thermoglucosidasius C56-YS93 consists of one circular chromosome of 3,893,306 bp and two circular plasmids of 80,849 and 19,638 bp and an average G + C content of 43.93 %. G. thermoglucosidasiusmore » C56-YS93 possesses a xylan degradation cluster not found in the other G. thermoglucosidasius sequenced strains. This cluster appears to be related to the xylan degradation cluster found in G. stearothermophilus. G. thermoglucosidasius C56-YS93 possesses two plasmids not found in the other two strains. Ultimately, one plasmid contains a novel gene cluster coding for proteins involved in proline degradation and metabolism, the other contains a collection of mostly hypothetical proteins.« less

  11. LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan |

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Department of Energy LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan To address the challenges associated with pursuing commercial nuclear power plant operations beyond 60 years, the U.S. Department of Energy's (DOE) Office of Nuclear Energy (NE) and the Electric Power Research Institute (EPRI) have established separate but complementary research and development programs: DOE-NE's Light Water

  12. Joint Summer School on "The Evolution and Impact of Microstructural Defects

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    on In-Reactor Material Response" | U.S. DOE Office of Science (SC) Joint Summer School on "The Evolution and Impact of Microstructural Defects on In-Reactor Material Response" Energy Frontier Research Centers (EFRCs) EFRCs Home Centers Research Science Highlights News & Events EFRC News EFRC Events DOE Announcements Publications History Contact BES Home 11.08.10 Joint Summer School on "The Evolution and Impact of Microstructural Defects on In-Reactor Material

  13. Solder Joints of Power Electronics

    Broader source: Energy.gov [DOE]

    2010 DOE Vehicle Technologies and Hydrogen Programs Annual Merit Review and Peer Evaluation Meeting, June 7-11, 2010 -- Washington D.C.

  14. Briefing: DOE and the Life and Medical Sciences

    Broader source: Energy.gov [DOE]

    Aristides Patrinos, Deputy Director for Research, NYU Center for Urban Science and Progress, discussed DOE and the Life and Medical Sciences in his presentation entitled, The Promise and Challenges of the Human Genome Program. Sharlene Weatherwax, Associate Director, Biological and Environmental Research, Office of Science, DOE, discussed DOE and the Life and Medical Sciences in her presentation entitled, The Department of Energy's Activities Supporting the Life and Medical Sciences.

  15. DOE ISM CHAMPIONS

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    92712 DOE ISM CHAMPIONS Organization Points of Contact Phone E-mail DOE ISM Co- Champion (HSS) Pat Worthington (301) 903-5926 pat.worthington@hq.doe.gov DOE ISM Co- Champion (EM) ...

  16. About | DOE Data Explorer

    Office of Scientific and Technical Information (OSTI)

    DOE Data Explorer About About DOE Data Explorer The DOE Data Explorer (DDE) is an information tool to help you locate DOE's collections of scientific research data and also ...

  17. Genomics:GTL Contractor-Grantee Workshop IV and Metabolic Engineering Working Group Inter-Agency Conference on Metabolic Engineering 2006

    SciTech Connect (OSTI)

    Mansfield, Betty Kay; Martin, Sheryl A

    2006-02-01

    Welcome to the 2006 joint meeting of the fourth Genomics:GTL Contractor-Grantee Workshop and the six Metabolic Engineering Working Group Inter-Agency Conference. The vision and scope of the Genomics:GTL program continue to expand and encompass research and technology issues from diverse scientific disciplines, attracting broad interest and support from researchers at universities, DOE national laboratories, and industry. Metabolic engineering's vision is the targeted and purposeful alteration of metabolic pathways to improve the understanding and use of cellular pathways for chemical transformation, energy transduction, and supramolecular assembly. These two programs have much complementarity in both vision and technological approaches, as reflected in this joint workshop. GLT's challenge to the scientific community remains the further development and use of a broad array of innovative technologies and computational tools to systematically leverage the knowledge and capabilities brought to us by DNA sequencing projects. The goal is to seek a broad and predictive understanding of the functioning and control of complex systems--individual microbes, microbial communities, and plants. GTL's prominent position at the interface of the physical, computational, and biological sciences is both a strength and challenge. Microbes remain GTL's principal biological focus. In the complex 'simplicity' of microbes, they find capabilities needed by DOE and the nation for clean and secure energy, cleanup of environmental contamination, and sequestration of atmospheric carbon dioxide that contributes to global warming. An ongoing challenge for the entire GTL community is to demonstrate that the fundamental science conducted in each of your research projects brings us a step closer to biology-based solutions for these important national energy and environmental needs.

  18. Joint Munitions Program | National Nuclear Security Administration

    National Nuclear Security Administration (NNSA)

    Joint Munitions Program DODDOE NNSA Joint Munitions Program: 30 years of collaborative ... This year marks more than 30 years of partnership through the JMP to improve and invest in ...

  19. DOE Project Scorecards

    Broader source: Energy.gov [DOE]

    DOE Project Scorecards DOEproject scorecards summarize capital asset project performance compared to the current approved baseline.

  20. Achievements of structural genomics (Technical Report) | SciTech Connect

    Office of Scientific and Technical Information (OSTI)

    Technical Report: Achievements of structural genomics Citation Details In-Document Search Title: Achievements of structural genomics Authors: Terwilliger, Thomas C. [1] + Show Author Affiliations Los Alamos National Laboratory Publication Date: 2013-10-03 OSTI Identifier: 1095844 Report Number(s): LA-UR-13-27702 DOE Contract Number: AC52-06NA25396 Resource Type: Technical Report Research Org: Los Alamos National Laboratory (LANL) Sponsoring Org: NIH Country of Publication: United States

  1. Application of Dye-Ligand Affinity Chromatography to Structural Genomics

    Office of Scientific and Technical Information (OSTI)

    (Technical Report) | SciTech Connect Application of Dye-Ligand Affinity Chromatography to Structural Genomics Citation Details In-Document Search Title: Application of Dye-Ligand Affinity Chromatography to Structural Genomics Authors: Kim, Chang Y. [1] + Show Author Affiliations Los Alamos National Laboratory Publication Date: 2013-07-22 OSTI Identifier: 1088347 Report Number(s): LA-UR-13-25609 DOE Contract Number: AC52-06NA25396 Resource Type: Technical Report Research Org: Los Alamos

  2. Multiplex automated genome engineering (Patent) | SciTech Connect

    Office of Scientific and Technical Information (OSTI)

    Multiplex automated genome engineering Citation Details In-Document Search Title: Multiplex automated genome engineering The present invention relates to automated methods of introducing multiple nucleic acid sequences into one or more target cells. Authors: Church, George M ; Wang, Harris H ; Isaacs, Farren J Publication Date: 2013-10-29 OSTI Identifier: 1107638 Report Number(s): 8,569,041 13/411,712 DOE Contract Number: FG02-02ER63445 Resource Type: Patent Research Org: Harvard University,

  3. Digital Sofcell Digital Ultracap joint venture | Open Energy...

    Open Energy Info (EERE)

    Ultracap joint venture Jump to: navigation, search Name: Digital Sofcell - Digital Ultracap joint venture Product: Digital Sofcell will joint venture with Digital Ultracap to...

  4. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology LANL leads the world in computational finishing of microbial genomes Read caption + In 2013, Los Alamos scientist Richard Sayre and his team genetically modified the organisms to harvest light more efficiently for maximum production. Overview of Research and Highlights Researchers at Los Alamos National Laboratory are using their renowned expertise in genomics, computation, and experimental biology as the foundation of a dynamic systems biology capability. Systems

  5. DOE - NNSA/NFO -- Photo Library JASPER

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    JASPER NNSA/NFO Language Options U.S. DOE/NNSA - Nevada Field Office Photo Library - JASPER The Joint Actinide Shock Physics Experimental Research Facility plays an integral role in the testing of the nation's nuclear weapons stockpile by providing a method to generate and measure data pertaining to the properties of materials (radioactive chemical elements) at high shock pressures, temperatures and strain rates. Instructions: Click the photograph THUMBNAIL to view the photograph details Click

  6. CLEERS Coordination & Joint Development of Benchmark Kinetics...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    More Documents & Publications CLEERS Coordination & Joint Development of Benchmark Kinetics for LNT & SCR CLEERS Coordination & Development of Catalyst Process Kinetic...

  7. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology LANL leads the world in computational finishing of microbial ... and experimental biology as the foundation of a dynamic systems biology capability. ...

  8. Genomics Division Home

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    to the most primitive soil microbe represent a watershed opportunity for biology. The Genomics Division is taking advantage of this wealth of new information. While it is well...

  9. Research and development joint ventures

    SciTech Connect (OSTI)

    Not Available

    1984-01-01

    Three panels made up of members of Congress and representatives of research and high technology industries testified at a hearing held to consider H.R. 1952 and H.R. 3393, both bills dealing with joint venture policies that diminish US competitiveness. The bills are designed to eliminate disincentives stemming from antitrust concerns about joint research and development (R and D) activities and to encourage private investment in R and D. The witnesses were asked to evaluate and compare the potential of these bills to overcome institutional barriers and to stimulate capital formation. Three appendices with statements from the National Association of Manufacturers, the Semiconductor Industry Association, and the Institute of Electrical and Electronics Engineers submitted for the record follow the testimony of the eight witnesses. (DCK)

  10. Genomic Data and Annotation from the SEED

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Fonstein, Michael; Kogan, Yakov; Osterman, Andrei; Overbeek, Ross; Vonstein, Veronika The Fellowship for Interpretation of Genomes (FIG)

    The SEED Project is a cooperative effort to annotate ever-expanding genomic data so researchers can conduct effective comparative analyses of genomes. Launched in 2003 by the Fellowship for Interpretation of Genomes (FIG), the project is one of several initiatives in ongoing development of data curation systems. SEED is designed to be used by scientists from numerous centers and with varied research objectives. As such, several institutions have since joined FIG in a consortium, including the University of Chicago, DOE’s Argonne National Laboratory (ANL), the University of Illinois at Urbana-Champaign, and others. As one example, ANL has used SEED to develop the National Microbial Pathogen Data Resource. Other agencies and institutions have used the project to discover genome components and clarify gene functions such as metabolism. SEED also has enabled researchers to conduct comparative analyses of closely related genomes and has supported derivation of stoichiometric models to understand metabolic processes. The SEED Project has been extended to support metagenomic samples and concomitant analytical tools. Moreover, the number of genomes being introduced into SEED is growing very rapidly. Building a framework to support this growth while providing highly accurate annotations is centrally important to SEED. The project’s subsystem-based annotation strategy has become the technological foundation for addressing these challenges.(copied from Appendix 7 of Systems Biology Knowledgebase for a New Era in Biology, A Genomics:GTL Report from the May 2008 Workshop, DOE/SC-0113, Grequrick, S; Fredrickson, J.K.; Stevens, R., Pub March 1, 2009.)

  11. Time-lapse Joint Inversion of Geophysical Data and its Applications to Geothermal Prospecting

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Time-lapse Joint Inversion of Geophysical Data and its Applications to Geothermal Prospecting - GEODE Principal Investigators: Andre Revil and Mike Batzle (Colorado School of Mines) Ezra Zemach (ORMAT) Project Officer: Mark Ziegenbein Total Project Funding: $635,000 This presentation does not contain any proprietary confidential, or otherwise restricted information. April 22, 2013 DE-EE0005513 Component Technologies R&D: 2 | US DOE Geothermal Office eere.energy.gov Relevance/Impact of

  12. A Tribute to Dr. S. Peter Rosen | U.S. DOE Office of Science...

    Office of Science (SC) Website

    ... A little known contribution of his is beginning the negotiations with NASA on the first DOE-NASA joint program, the GLAST experiment, which started what will continue to be an ...

  13. Metal-ceramic joint assembly

    DOE Patents [OSTI]

    Li, Jian

    2002-01-01

    A metal-ceramic joint assembly in which a brazing alloy is situated between metallic and ceramic members. The metallic member is either an aluminum-containing stainless steel, a high chromium-content ferritic stainless steel or an iron nickel alloy with a corrosion protection coating. The brazing alloy, in turn, is either an Au-based or Ni-based alloy with a brazing temperature in the range of 9500 to 1200.degree. C.

  14. Intermetallic Layers in Soldered Joints

    Energy Science and Technology Software Center (OSTI)

    1998-12-10

    ILAG solves the one-dimensional partial differential equations describing the multiphase, multicomponent, solid-state diffusion-controlled growth of intermetallic layers in soldered joints. This software provides an analysis capability for materials researchers to examine intermetallic growth mechanisms in a wide variety of defense and commercial applications involving both traditional and advanced materials. ILAG calculates the interface positions of the layers, as well as the spatial distribution of constituent mass fractions, and outputs the results at user-prescribed simulation times.

  15. Electrolyte Genome Reveals New Instability Mechanism in Mg Electrolytes -

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Joint Center for Energy Storage Research February 10, 2015, Research Highlights Electrolyte Genome Reveals New Instability Mechanism in Mg Electrolytes (Top) The Mg salt and solvent combinations simulated for solvation shell structures and dynamics (Bottom) The TFSI- decomposition mechanism triggered by partial reduction of Mg2+ ->Mg+. This mechanism consumes anion, disrupts the deposition of Mg0 on the anode and may deposit anion fragments on the anode. Scientific Achievement Simulations

  16. Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Doethideomycetes Fungi

    SciTech Connect (OSTI)

    Ohm, Robin A.; Feau, Nicolas; Henrissat, Bernard; Schoch, Conrad L.; Horwitz, Benjamin A.; Barry, Kerrie W.; Condon, Bradford J.; Copeland, Alex C.; Dhillon, Braham; Glaser, Fabien; Hesse, Cedar N.; Kosti, Idit; LaButti, Kurt; Lindquist, Erika A.; Lucas, Susan; Salamov, Asaf A.; Bradshaw, Rosie E.; Ciuffetti, Lynda; Hamelin, Richard C.; Kema, Gert H. J.; Lawrence, Christopher; Scott, James A.; Spatafora, Joseph W.; Turgeon, B. Gillian; de Wit, Pierre J. G. M.; Zhong, Shaobin; Goodwin, Stephen B.; Grigoriev, Igor V.

    2012-03-13

    The class of Dothideomycetes is one of the largest and most diverse groups of fungi. Many are plant pathogens and pose a serious threat to agricultural crops grown for biofuel, food or feed. Most Dothideomycetes have only a single host and related species can have very diverse host plants. Eighteen genomes of Dothideomycetes have currently been sequenced by the Joint Genome Institute and other sequencing centers. Here we describe the results of comparative analyses of the fungi in this group.

  17. Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy |

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Department of Energy of the U.S.-Iraq Joint Coordinating Committee on Energy Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy April 23, 2012 - 2:25pm Addthis The governments of the United States of America and the Republic of Iraq reaffirmed their commitment to joint cooperation in the areas of oil production and export, natural gas, electricity, and critical energy infrastructure protection during the inaugural meeting of the Joint Coordinating Committee (JCC) on

  18. Public key infrastructure for DOE security research

    SciTech Connect (OSTI)

    Aiken, R.; Foster, I.; Johnston, W.E.

    1997-06-01

    This document summarizes the Department of Energy`s Second Joint Energy Research/Defence Programs Security Research Workshop. The workshop, built on the results of the first Joint Workshop which reviewed security requirements represented in a range of mission-critical ER and DP applications, discussed commonalties and differences in ER/DP requirements and approaches, and identified an integrated common set of security research priorities. One significant conclusion of the first workshop was that progress in a broad spectrum of DOE-relevant security problems and applications could best be addressed through public-key cryptography based systems, and therefore depended upon the existence of a robust, broadly deployed public-key infrastructure. Hence, public-key infrastructure ({open_quotes}PKI{close_quotes}) was adopted as a primary focus for the second workshop. The Second Joint Workshop covered a range of DOE security research and deployment efforts, as well as summaries of the state of the art in various areas relating to public-key technologies. Key findings were that a broad range of DOE applications can benefit from security architectures and technologies built on a robust, flexible, widely deployed public-key infrastructure; that there exists a collection of specific requirements for missing or undeveloped PKI functionality, together with a preliminary assessment of how these requirements can be met; that, while commercial developments can be expected to provide many relevant security technologies, there are important capabilities that commercial developments will not address, due to the unique scale, performance, diversity, distributed nature, and sensitivity of DOE applications; that DOE should encourage and support research activities intended to increase understanding of security technology requirements, and to develop critical components not forthcoming from other sources in a timely manner.

  19. Application for Presidential Permit OE Docket No. PP-82-4 The Joint Owners of the Highgate Project: Federal Register Notice, Volume 80, No. 241- December 16, 2015

    Broader source: Energy.gov [DOE]

    Amended application from Vermont Electric Power Company, Inc. as agent for the Joint Owners of the Highgate Project requesting that DOE remove certain operating conditions in the Permit that are no longer necessary. Federal Register Notice.

  20. Joint Environmental Management System (EMS) Declaration of Conformance...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Services Environmental Management System Joint Environmental Management System (EMS) Declaration of Conformance Joint Environmental Management System (EMS) Declaration of ...

  1. SciTech Connect: genomics

    Office of Scientific and Technical Information (OSTI)

    genomics Find + Advanced Search Term Search Semantic Search Advanced Search All Fields: genomics Semantic Semantic Term Title: Full Text: Bibliographic Data: Creator Author:...

  2. Human Genome Research: Decoding DNA

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Human Genome Research: Decoding DNA Resources with Additional Information Charles DeLisi ... role in proposing and initiating the Human Genome Program in 1986. The U.S. ...

  3. Tackling the Triple-Threat Genome of Miscanthus x giganteus (2010 JGI User Meeting)

    ScienceCinema (OSTI)

    Moose, Steve

    2011-04-25

    Steve Moose from the University of Illinois at Urbana-Champaign and the Energy Biosciences Institute on "Tackling the Triple-Threat Genome of Miscanthus x giganteus" on March 25, 2010 at the 5th Annual DOE JGI User Meeting

  4. Efficient Short-Read Assembly of Eukaryotic Genomes (2010 JGI/ANL HPC Workshop)

    ScienceCinema (OSTI)

    Chapman, Jarrod

    2011-06-03

    Jarrod Chapman of the DOE JGI gives a presentation on "Efficient Short-Read Assembly of Eukaryotic Genomes" at the JGI/Argonne HPC Workshop on January 25, 2010.

  5. Discovery of Genes and Genomes through Deep Metagenomic Sequencing of Cow Rumen (2010 JGI User Meeting)

    ScienceCinema (OSTI)

    Rubin, Eddy

    2011-04-25

    Director Eddy Rubin on "Discovery of Genes and Genomes through Deep Metagenomic Sequencing of Cow Rumen" on March 25, 2010 at the 5th Annual DOE JGI User Meeting

  6. From Fjords to Open Seas: Ecological Genomics of Expanding Oxygen Minimum Zones (2010 JGI User Meeting)

    ScienceCinema (OSTI)

    Hallam, Steven

    2011-04-26

    Steven Hallam of the University of British Columbia talks "From Fjords to Open Seas: Ecological Genomics of Expanding Oxygen Minimum Zones" on March 24, 2010 at the 5th Annual DOE JGI User Meeting

  7. DOE-FLEX: DOE's Telework Program

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2013-02-11

    The order establishes the requirements and responsibilities for the Departments telework program. Supersedes DOE N 314.1.

  8. DOE Public-Private Consortia | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    DOE Public-Private Consortia DOE Public-Private Consortia Public-private consortia serve important roles in commercializing new energy technologies. As defined here, a consortium involves engaging in precompetitive research activities under a formal agreement that covers the work to be performed and how information will be shared. Thus, consortia enable joint research on platform technologies and early stage research in a technical field and leave participants free to build on the shared

  9. DOE Researchers Achieve Important Genetic Breakthroughs to Help Develop

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Cheaper Biofuels | Department of Energy Researchers Achieve Important Genetic Breakthroughs to Help Develop Cheaper Biofuels DOE Researchers Achieve Important Genetic Breakthroughs to Help Develop Cheaper Biofuels December 22, 2011 - 2:26pm Addthis Washington D.C. - Researchers at the U.S. Department of Energy's (DOE's) Joint BioEnergy Institute (JBEI) announced today a major breakthrough in engineering systems of RNA molecules through computer-assisted design, which could lead to important

  10. 2011 DOE Hydrogen Program and Vehicle Technologies Office Annual Merit

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Review and Peer Evaluation Meeting | Department of Energy 11 DOE Hydrogen Program and Vehicle Technologies Office Annual Merit Review and Peer Evaluation Meeting 2011 DOE Hydrogen Program and Vehicle Technologies Office Annual Merit Review and Peer Evaluation Meeting May 9-13, 2011 Washington, D.C. Monday, May 9, 2011 Joint Plenary Session Plenary Session Poster Presentations Tuesday, May 10, 2010 Oral Presentations Poster Presentions Wednesday, May 11, 2011 Oral Presentations Poster

  11. Researchers Funded by the DOE "Genomes to Life" Program Achieve...

    Broader source: Energy.gov (indexed) [DOE]

    of specially designed microbes living within the emission-control system of a coal-fired plant, consuming its pollution and its carbon dioxide, or employing microbes to ...

  12. DOE PAGES Beta

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    portal to journal articles and accepted manuscripts resulting from DOE-funded research DOE PAGES Beta is the DOE response to the February 2013 White House Office of Science and...

  13. DRAFT DOE Training Curriculum

    Energy Savers [EERE]

    (ManagersSupervisors) PHY-128DE Basic Survey Overview PHY-130 Basic Survey VAP-335 Fundamentals of Performance Testing DOE-200DE Assessment Fundamentals DOE-210 Assessment...

  14. Genomic definition of species

    SciTech Connect (OSTI)

    Crkvenjakov, R.; Drmanac, R.

    1991-07-01

    The subject of this paper is the definition of species based on the assumption that genome is the fundamental level for the origin and maintenance of biological diversity. For this view to be logically consistent it is necessary to assume the existence and operation of the new law which we call genome law. For this reason the genome law is included in the explanation of species phenomenon presented here even if its precise formulation and elaboration are left for the future. The intellectual underpinnings of this definition can be traced to Goldschmidt. We wish to explore some philosophical aspects of the definition of species in terms of the genome. The point of proposing the definition on these grounds is that any real advance in evolutionary theory has to be correct in both its philosophy and its science.

  15. Genomic library construction

    DOE Patents [OSTI]

    Church, George M.; Zhang, Kun

    2011-07-26

    Compositions and methods for amplifying nucleic acid sequences from a single cell are provided. Compositions and methods for constructing a genomic library from a single cell are also provided.

  16. DOE Sustainability SPOtlight: Special Edition 2013 DOE Sustainability...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    DOE Sustainability SPOtlight: Special Edition 2013 DOE Sustainability Awards DOE Sustainability SPOtlight: Special Edition 2013 DOE Sustainability Awards Newsletter highlights the ...

  17. DOE's General Counsel Determines Sudan Act Does Not Bar Areva...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    DOE's General Counsel Determines Sudan Act Does Not Bar Areva Enrichment Services LLC Loan Application DOE's General Counsel Determines Sudan Act Does Not Bar Areva Enrichment ...

  18. Integrative Genomics Building

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Integrative Genomics Building Community Environmental Documents Tours Community Programs Friends of Berkeley Lab ⇒ Navigate Section Community Environmental Documents Tours Community Programs Friends of Berkeley Lab Project Description The Integrative Genomics Building (IGB) is proposed to be an approximately 77,000 gsf, four-story research and office building constructed in the former Bevatron area - a fully developed site in the geographic interior of the Berkeley Lab. The IGB is intended to

  19. LDRD joint computational/experimental project

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    LDRD joint computationalexperimental project - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy ...

  20. Joint Outreach Task Group Calendar: September 2013

    Broader source: Energy.gov [DOE]

    Joint Outreach Task Group (JOTG)has created a monthly calendar of community events to facilitate interagency and community involvement in these events. September 2013

  1. Joint Convention | National Nuclear Security Administration

    National Nuclear Security Administration (NNSA)

    Joint Convention U.S. Leads Fifth International Review Meeting on the Safety of Spent Fuel and Radioactive Waste Management at the IAEA VIENNA, AUSTRIA - Today, representatives...

  2. Joint Actinide Shock Physics Experimental Research | National...

    National Nuclear Security Administration (NNSA)

    Joint Actinide Shock Physics Experimental Research The JASPER gas gun at the Nevada ... For more information visit JASPER's webpage. Jasper Gun Related Topics Maintaining the ...

  3. High-temperature brazed ceramic joints

    DOE Patents [OSTI]

    Jarvinen, Philip O.

    1986-01-01

    High-temperature joints formed from metallized ceramics are disclosed wherein the metal coatings on the ceramics are vacuum sputtered thereon.

  4. CLEERS Coordination & Joint Development of Benchmark Kinetics...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    of Catalyst Process Kinetic Data CLEERS Coordination & Joint Development of Benchmark Kinetics for LNT & SCR Functionality of Commercial NOx Storage-Reduction Catalysts...

  5. Ebolavirus comparative genomics

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Jun, Se-Ran; Leuze, Michael R.; Nookaew, Intawat; Uberbacher, Edward C.; Land, Miriam; Zhang, Qian; Wanchai, Visanu; Chai, Juanjuan; Nielsen, Morten; Trolle, Thomas; et al

    2015-07-14

    The 2014 Ebola outbreak in West Africa is the largest documented for this virus. We examine the dynamics of this genome, comparing more than one hundred currently available ebolavirus genomes to each other and to other viral genomes. Based on oligomer frequency analysis, the family Filoviridae forms a distinct group from all other sequenced viral genomes. All filovirus genomes sequenced to date encode proteins with similar functions and gene order, although there is considerable divergence in sequences between the three genera Ebolavirus, Cuevavirus, and Marburgvirus within the family Filoviridae. Whereas all ebolavirus genomes are quite similar (multiple sequences of themore » same strain are often identical), variation is most common in the intergenic regions and within specific areas of the genes encoding the glycoprotein (GP), nucleoprotein (NP), and polymerase (L). We predict regions that could contain epitope-binding sites, which might be good vaccine targets. In conclusion, this information, combined with glycosylation sites and experimentally determined epitopes, can identify the most promising regions for the development of therapeutic strategies.« less

  6. Implications of the Human Genome Project

    SciTech Connect (OSTI)

    Kitcher, P.

    1998-11-01

    The Human Genome Project (HGP), launched in 1991, aims to map and sequence the human genome by 2006. During the fifteen-year life of the project, it is projected that $3 billion in federal funds will be allocated to it. The ultimate aims of spending this money are to analyze the structure of human DNA, to identify all human genes, to recognize the functions of those genes, and to prepare for the biology and medicine of the twenty-first century. The following summary examines some of the implications of the program, concentrating on its scientific import and on the ethical and social problems that it raises. Its aim is to expose principles that might be used in applying the information which the HGP will generate. There is no attempt here to translate the principles into detailed proposals for legislation. Arguments and discussion can be found in the full report, but, like this summary, that report does not contain any legislative proposals.

  7. Genome-Facilitated Analyses of Geomicrobial Processes

    SciTech Connect (OSTI)

    Kenneth H. Nealson

    2012-05-02

    This project had the goal(s) of understanding the mechanism(s) of extracellular electron transport (EET) in the microbe Shewanella oneidensis MR-1, and a number of other strains and species in the genus Shewanella. The major accomplishments included sequencing, annotation, and analysis of more than 20 Shewanella genomes. The comparative genomics enabled the beginning of a systems biology approach to this genus. Another major contribution involved the study of gene regulation, primarily in the model organism, MR-1. As part of this work, we took advantage of special facilities at the DOE: e.g., the synchrotron radiation facility at ANL, where we successfully used this system for elemental characterization of single cells in different metabolic states (1). We began work with purified enzymes, and identification of partially purified enzymes, leading to initial characterization of several of the 42 c-type cytochromes from MR-1 (2). As the genome became annotated, we began experiments on transcriptome analysis under different conditions of growth, the first step towards systems biology (3,4). Conductive appendages of Shewanella, called bacterial nanowires were identified and characterized during this work (5, 11, 20,21). For the first time, it was possible to measure the electron transfer rate between single cells and a solid substrate (20), a rate that has been confirmed by several other laboratories. We also showed that MR-1 cells preferentially attach to cells at a given charge, and are not attracted, or even repelled by other charges. The interaction with the charged surfaces begins with a stimulation of motility (called electrokinesis), and eventually leads to attachment and growth. One of the things that genomics allows is the comparative analysis of the various Shewanella strains, which led to several important insights. First, while the genomes predicted that none of the strains looked like they should be able to degrade N-acetyl glucosamine (NAG), the monomer

  8. DOE Lessons Learned

    Broader source: Energy.gov [DOE]

    DOE Lessons Learned Information Services Catches the Eye of Corporations and Educational Institutions

  9. Chu Announces Joint U.S.-China Building Efficiency MOU | Department of

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Energy Announces Joint U.S.-China Building Efficiency MOU Chu Announces Joint U.S.-China Building Efficiency MOU July 16, 2009 - 12:00am Addthis BEIJING, CHINA - After touring the "America House," a U.S. designed demonstration of cutting edge "zero energy" building technology, U.S. Energy Secretary Steven Chu today announced a new agreement between the U.S. Department of Energy (DOE) and the Chinese Ministry of Urban-Rural Development (MOHURD) to foster collaboration and

  10. GenomeVista

    Energy Science and Technology Software Center (OSTI)

    2002-11-04

    Aligning large vertebrate genomes that are structurally complex poses a variety of problems not encountered on smaller scales. Such genomes are rich in repetitive elements and contain multiple segmental duplications, which increases the difficulty of identifying true orthologous SNA segments in alignments. The sizes of the sequences make many alignment algorithms designed for comparing single proteins extremely inefficient when processing large genomic intervals. We integrated both local and global alignment tools and developed a suitemore » of programs for automatically aligning large vertebrate genomes and identifying conserved non-coding regions in the alignments. Our method uses the BLAT local alignment program to find anchors on the base genome to identify regions of possible homology for a query sequence. These regions are postprocessed to find the best candidates which are then globally aligned using the AVID global alignment program. In the last step conserved non-coding segments are identified using VISTA. Our methods are fast and the resulting alignments exhibit a high degree of sensitivity, covering more than 90% of known coding exons in the human genome. The GenomeVISTA software is a suite of Perl programs that is built on a MySQL database platform. The scheduler gets control data from the database, builds a queve of jobs, and dispatches them to a PC cluster for execution. The main program, running on each node of the cluster, processes individual sequences. A Perl library acts as an interface between the database and the above programs. The use of a separate library allows the programs to function independently of the database schema. The library also improves on the standard Perl MySQL database interfere package by providing auto-reconnect functionality and improved error handling.« less

  11. DOE-FLEX: DOE's Telework Program

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2011-07-05

    The directive establishes the requirements and responsibilities for the Departments telework program. Canceled by DOE O 314.1.

  12. UV Decontamination of MDA Reagents for Single Cell Genomics

    SciTech Connect (OSTI)

    Lee, Janey; Tighe, Damon; Sczyrba, Alexander; Malmatrom, Rex; Clingenpeel, Scott; Malfatti, Stephanie; Rinke, Christian; Wang, Zhong; Stepanauskas, Ramunas; Cheng, Jan-Fang; Woyke, Tanja

    2011-03-18

    Single cell genomics, the amplification and sequencing of genomes from single cells, can provide a glimpse into the genetic make-up and thus life style of the vast majority of uncultured microbial cells, making it an immensely powerful and increasingly popular tool. This is accomplished by use of multiple displacement amplification (MDA), which can generate billions of copies of a single bacterial genome producing microgram-range DNA required for shotgun sequencing. Here, we address a key challenge inherent to this approach and propose a solution for the improved recovery of single cell genomes. While DNA-free reagents for the amplification of a single cell genome are a prerequisite for successful single cell sequencing and analysis, DNA contamination has been detected in various reagents, which poses a considerable challenge. Our study demonstrates the effect of UV irradiation in efficient elimination of exogenous contaminant DNA found in MDA reagents, while maintaining Phi29 activity. Consequently, we also find that increased UV exposure to Phi29 does not adversely affect genome coverage of MDA amplified single cells. While additional challenges in single cell genomics remain to be resolved, the proposed methodology is relatively quick and simple and we believe that its application will be of high value for future single cell sequencing projects.

  13. American Gas Association (AGA) for DOE Furnace Product Class | Department

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    of Energy (AGA) for DOE Furnace Product Class American Gas Association (AGA) for DOE Furnace Product Class Thank you for the opportunity to brief your staff in recent weeks on an impact analysis of a national condensing furnace standard, which was conducted jointly by the American Gas Association (AGA), the American Public Gas Association (APGA), and the Gas Technology Institute (GTI). AGA e-mail for DOE Furnace Product Class (83.56 KB) AGA Cover Letter for Furnace Product Class White Paper

  14. DOE Awards Support Service Contract | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Support Service Contract DOE Awards Support Service Contract May 7, 2015 - 2:00pm Addthis Media Contact: Lynette Chafin, 513-246-0461, Lynette.Chafin@emcbc.doe.gov Cincinnati - The U.S. Department of Energy (DOE) today announced the award of an Indefinite Delivery/Indefinite Quantity (ID/IQ) contract to IEI-PEC, JV, of Lincoln, Nebraska. IEI-PEC, JV is a Small Business Administration (SBA) Certified 8(a) Joint Venture under the SBA's 8(a) Program. The contract will have a maximum value of $3.5

  15. High temperature ceramic/metal joint structure

    DOE Patents [OSTI]

    Boyd, Gary L.

    1991-01-01

    A high temperature turbine engine includes a hybrid ceramic/metallic rotor member having ceramic/metal joint structure. The disclosed joint is able to endure higher temperatures than previously possible, and aids in controlling heat transfer in the rotor member.

  16. EM Contributes to Joint Convention Meeting

    Broader source: Energy.gov [DOE]

    EM officials recently participated in the Fifth Review Meeting of the Parties to the Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management (Joint Convention) at the International Atomic Energy Agency (IAEA) headquarters.

  17. Genomes to Proteomes

    SciTech Connect (OSTI)

    Panisko, Ellen A.; Grigoriev, Igor; Daly, Don S.; Webb-Robertson, Bobbie-Jo; Baker, Scott E.

    2009-03-01

    Biologists are awash with genomic sequence data. In large part, this is due to the rapid acceleration in the generation of DNA sequence that occurred as public and private research institutes raced to sequence the human genome. In parallel with the large human genome effort, mostly smaller genomes of other important model organisms were sequenced. Projects following on these initial efforts have made use of technological advances and the DNA sequencing infrastructure that was built for the human and other organism genome projects. As a result, the genome sequences of many organisms are available in high quality draft form. While in many ways this is good news, there are limitations to the biological insights that can be gleaned from DNA sequences alone; genome sequences offer only a bird's eye view of the biological processes endemic to an organism or community. Fortunately, the genome sequences now being produced at such a high rate can serve as the foundation for other global experimental platforms such as proteomics. Proteomic methods offer a snapshot of the proteins present at a point in time for a given biological sample. Current global proteomics methods combine enzymatic digestion, separations, mass spectrometry and database searching for peptide identification. One key aspect of proteomics is the prediction of peptide sequences from mass spectrometry data. Global proteomic analysis uses computational matching of experimental mass spectra with predicted spectra based on databases of gene models that are often generated computationally. Thus, the quality of gene models predicted from a genome sequence is crucial in the generation of high quality peptide identifications. Once peptides are identified they can be assigned to their parent protein. Proteins identified as expressed in a given experiment are most useful when compared to other expressed proteins in a larger biological context or biochemical pathway. In this chapter we will discuss the automatic

  18. MODELING UNDERGROUND STRUCTURE VULNERABILITY IN JOINTED ROCK

    SciTech Connect (OSTI)

    R. SWIFT; D. STEEDMAN

    2001-02-01

    The vulnerability of underground structures and openings in deep jointed rock to ground shock attack is of chief concern to military planning and security. Damage and/or loss of stability to a structure in jointed rock, often manifested as brittle failure and accompanied with block movement, can depend significantly on jointed properties, such as spacing, orientation, strength, and block character. We apply a hybrid Discrete Element Method combined with the Smooth Particle Hydrodynamics approach to simulate the MIGHTY NORTH event, a definitive high-explosive test performed on an aluminum lined cylindrical opening in jointed Salem limestone. Representing limestone with discrete elements having elastic-equivalence and explicit brittle tensile behavior and the liner as an elastic-plastic continuum provides good agreement with the experiment and damage obtained with finite-element simulations. Extending the approach to parameter variations shows damage is substantially altered by differences in joint geometry and liner properties.

  19. Environmental Molecular Sciences Laboratory (EMSL) | U.S. DOE Office of

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science (SC) Environmental Molecular Sciences Laboratory (EMSL) Biological and Environmental Research (BER) BER Home About Research Facilities User Facilities Atmospheric Radiation Measurement Climate Research Facility (ARM) Environmental Molecular Sciences Laboratory (EMSL) Joint Genome Institute (JGI) Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) Community Resources Contact Information Biological and

  20. DOE Data ID Service - Digital object identifiers for DOE scientific...

    Office of Scientific and Technical Information (OSTI)

    DOE Data ID Service DataCite | Contact DOE Data ID Service DOE Data ID Service DOE Data ID Service The DOE Office of Scientific and Technical Information (OSTI) offers a service ...

  1. Berkeley Quantitative Genome Browser

    Energy Science and Technology Software Center (OSTI)

    2008-02-29

    The Berkeley Quantitative Genome Browser provides graphical browsing functionality for genomic data organized, at a minimum, by sequence and position. While supporting the annotation browsing features typical of many other genomic browsers, additional emphasis is placed on viewing and utilizing quantitative data. Data may be read from GFF, SGR, FASTA or any column delimited format. Once the data has been read into the browser's buffer, it may be searched. filtered or subjected to mathematical transformation.more » The browser also supplies some graphical design manipulation functionality geared towards preparing figures for presentations or publication. A plug-in mechanism enables development outside the core functionality that adds more advanced or esoteric analysis capabilities. BBrowse's development and distribution is open-source and has been built to run on Linux, OSX and MS Windows operating systems.« less

  2. Extension of DOE Directives

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2005-03-18

    The following directives are extended until 3-18-06: DOE N 205.8, Cyber Security Requirements for Wireless Devices and Information Systems, dated 2-11-04; DOE N 205.9, Certification and Accreditation Process for Information Systems Including National Security Systems, dated 02-19-04; DOE N 205.10, Cyber Security Requirements for Risk Management, dated 02-19-04; DOE N 205.11, Security Requirements for Remote Access to DOE and Applicable Contractor Information Technology Systems, dated 2-19-04. DOE N 205.12, Clearing, Sanitizing, and Destroying Information System Storage Media, Memory Devices, and Other Related Hardware, dated 2-19-04.

  3. 2013 DOE Bioenergy Technologies Office (BETO) Project Peer Review

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Fungal Genomics aka Fungal Biotechnology May 21, 2013 Technology Area Review: Biochemical Conversion Principal Investigator: Jon Magnuson Organization: PNNL This presentation does not contain any proprietary, confidential, or otherwise restricted information 2 | Bioenergy Technologies Office eere.energy.gov Goal Statement * Our goal is enabling accelerated development of fungal bioprocesses using fungi that are industrially relevant. * Use systems biology, genetic engineering and bioreactors to

  4. U.S.-Japan Joint Statement | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    -Japan Joint Statement U.S.-Japan Joint Statement U.S.-Japan Joint Statement prepared as part of the International Partnership for a Hydrogen Economy PDF icon usjapanstatementre...

  5. United States and France Sign Joint Statement on Civil Liability...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    and France Sign Joint Statement on Civil Liability for Nuclear Damage United States and France Sign Joint Statement on Civil Liability for Nuclear Damage Joint Statement Signed.pdf ...

  6. U.S.-Brazil Strategic Energy Dialogue Joint Report | Department...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Dialogue Joint Report U.S.-Brazil Strategic Energy Dialogue Joint Report PDF icon First Joint Report to Presidents on U.S.-Brazil Strategic Energy Dialogue.pdf More Documents &...

  7. Sealed joint structure for electrochemical device

    DOE Patents [OSTI]

    Tucker, Michael C; Jacobson, Craig P; De Jonghe, Lutgard C; Visco, Steven J

    2013-05-21

    Several members make up a joint in a high-temperature electrochemical device, wherein the various members perform different functions. The joint is useful for joining multiple cells (generally tubular modules) of an electrochemical device to produce a multi-cell segment-in-series stack for a solid oxide fuel cell, for instance. The joint includes sections that bond the joining members to each other; one or more seal sections that provide gas-tightness, and sections providing electrical connection and/or electrical insulation between the various joining members. A suitable joint configuration for an electrochemical device has a metal joint housing, a first porous electrode, a second porous electrode, separated from the first porous electrode by a solid electrolyte, and an insulating member disposed between the metal joint housing and the electrolyte and second electrode. One or more brazes structurally and electrically connects the first electrode to the metal joint housing and forms a gas tight seal between the first electrode and the second electrode.

  8. U.S. EPA, DOE Announce Changes to Bolster ENERGY STAR Program | Department

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    of Energy EPA, DOE Announce Changes to Bolster ENERGY STAR Program U.S. EPA, DOE Announce Changes to Bolster ENERGY STAR Program April 14, 2010 - 12:00am Addthis WASHINGTON, DC - The U.S. Environmental Protection Agency and the Department of Energy today jointly announced changes to the ENERGY STAR® product certification process to ensure that only products meeting the ENERGY STAR® requirements can receive an ENERGY STAR® label. These changes accelerate steps DOE and EPA have initiated

  9. Active DOE Technical Standards

    Broader source: Energy.gov (indexed) [DOE]

    ... Best Praces for Evaluaon of Nuclear Facility Training Programs James O'Brien DOE-STD-1073-2003 Conguraon Management Program James O'Brien DOE-HDBK-1076-94 Table-Top ...

  10. Draft DOE P 226

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Extension of DOE N XXX.X (Title) Synopsis Summary Background: The Office of XXXXXXXXXXXX (XX) is requesting a 1-year extension to DOE N XXX.X, (Title), dated XX-XX-XX. The Notice ...

  11. DOE-HTGR-88111

    Office of Scientific and Technical Information (OSTI)

    Atomics P.O. Box 85608 San Diego, California 92138-5608 DOE CONTRACT ... Confer- ence on Carbon at Irvine, California, July 13-22, 1977. 3-27 DOE-HTGR-88111...

  12. Active DOE Technical Standards

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Handbook, Volume 1 of 2 Josh Silverman DOE-HDBK-10282-2009 Human Performance Improvement Handbook, Volume 2 of 2 Josh Silverman DOE-STD-1030-96 Guide to Good Pracces ...

  13. DOE NEPA Compliance Officers

    Energy Savers [EERE]

    Environmental Management (EM) Environmental Management 202-586-7668 FORS EM-11 20585 EM Julie Smith juliea.smith@hq.doe.gov Carlsbad Field Office 575-234-7349 575-234-7061 DOE...

  14. Joint inversion of electrical and seismic data for Fracture char. and Imaging of Fluid Flow in Geothermal Systems

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Joint inversion of electrical and seismic data for Fracture char. and Imaging of Fluid Flow in Geothermal Systems Michael Batzle, PI Colorado School of Mines Track Name: Fluid Imaging Project Officer: Eric Hess Total Project Funding: $1,246, 579 April 22, 2013 This presentation does not contain any proprietary confidential, or otherwise restricted information. 2 | US DOE Geothermal Office eere.energy.gov Relevance/Impact of Research Project objectives * Use combined inversion of geophysical data

  15. The Integrated Microbial Genomes (IMG) System: An Expanding Comparative Analysis Resource

    SciTech Connect (OSTI)

    Markowitz, Victor M.; Chen, I-Min A.; Palaniappan, Krishna; Chu, Ken; Szeto, Ernest; Grechkin, Yuri; Ratner, Anna; Anderson, Iain; Lykidis, Athanasios; Mavromatis, Konstantinos; Ivanova, Natalia N.; Kyrpides, Nikos C.

    2009-09-13

    The integrated microbial genomes (IMG) system serves as a community resource for comparative analysis of publicly available genomes in a comprehensive integrated context. IMG contains both draft and complete microbial genomes integrated with other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and reviewing the annotations of genes and genomes in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through regular releases. Several companion IMG systems have been set up in order to serve domain specific needs, such as expert review of genome annotations. IMG is available at doe.gov>.

  16. EA-1945: Northern Mid-Columbia Joint Project; Grant, Douglas...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    EA-1945: Northern Mid-Columbia Joint Project; Grant, Douglas, and Chelan Counties, Washington EA-1945: Northern Mid-Columbia Joint Project; Grant, Douglas, and Chelan Counties, ...

  17. Tianjin Lishen Battery Joint stock Co Ltd | Open Energy Information

    Open Energy Info (EERE)

    Lishen Battery Joint stock Co Ltd Jump to: navigation, search Name: Tianjin Lishen Battery Joint-stock Co Ltd Place: Tianjin, Tianjin Municipality, China Zip: 300384 Product:...

  18. Joint inversion in coupled quasi-static poroelasticity (Journal...

    Office of Scientific and Technical Information (OSTI)

    Joint inversion in coupled quasi-static poroelasticity Citation Details In-Document Search Title: Joint inversion in coupled quasi-static poroelasticity Authors: Hesse, Marc A. ; ...

  19. Joint Meeting on Hydrogen Delivery Modeling and Analysis Meeting...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Agenda Joint Meeting on Hydrogen Delivery Modeling and Analysis Meeting Agenda Agenda for the Joint Meeting on Hydrogen Delivery Modeling and Analysis, May 8-9, 2007 ...

  20. Joint Meeting on Hydrogen Delivery Modeling and Analysis, May...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Joint Meeting on Hydrogen Delivery Modeling and Analysis, May 8-9, 2007, Discussion ... the Joint Meeting on Hydrogen Delivery Modeling and Analysis, May 8-9, 2007. ...

  1. Joint Meeting on Hydrogen Delivery Modeling and Analysis Meeting...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Joint Meeting on Hydrogen Delivery Modeling and Analysis Meeting Attendees List Attendee list from the Joint Meeting on Hydrogen Delivery Modeling and Analysis, May 8-9, 2007 ...

  2. Ryazan Metal Ceramics Instrumentation Plant Joint Stock Co RMCIP...

    Open Energy Info (EERE)

    Ryazan Metal Ceramics Instrumentation Plant Joint Stock Co RMCIP JSC Jump to: navigation, search Name: Ryazan Metal Ceramics Instrumentation Plant Joint Stock Co (RMCIP JSC) Place:...

  3. Joint Fuel Cell Technologies and Advanced Manufacturing Webinar...

    Broader source: Energy.gov (indexed) [DOE]

    the presentation slides from the "Joint Fuel Cell Technologies Office and Advanced Manufacturing Office Webinar" held November 20, 2012. PDF icon Joint Fuel Cell Technologies ...

  4. EA-1945: Northern Mid-Columbia Joint Project; Grant, Douglas...

    Office of Environmental Management (EM)

    5: Northern Mid-Columbia Joint Project; Grant, Douglas, and Chelan Counties, Washington EA-1945: Northern Mid-Columbia Joint Project; Grant, Douglas, and Chelan Counties, ...

  5. New Report Describes Joint Opportunities for Natural Gas and...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Report Describes Joint Opportunities for Natural Gas and Hydrogen Fuel Cell Vehicle Markets New Report Describes Joint Opportunities for Natural Gas and Hydrogen Fuel Cell Vehicle...

  6. Joint inversion of electrical and seismic data for Fracture char...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Joint inversion of electrical and seismic data for Fracture char. and Imaging of Fluid Flow in Geothermal Systems Joint inversion of electrical and seismic data for Fracture char. ...

  7. Joint Global Change Research Institute | Open Energy Information

    Open Energy Info (EERE)

    solutions. Joint Institute staff bring decades of experience and expertise to bear in science, technology, economics, and policy. "The Joint Global Change Research Institute...

  8. Third National Report for the Joint Convention on the Safety...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Third National Report for the Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management Third National Report for the Joint ...

  9. Fifth National Report for the Joint Convention on the Safety...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Fifth National Report for the Joint Convention on the Safety of Spent Fuel Management and the Safety of Radioactive Waste Management Fifth National Report for the Joint Convention ...

  10. National Report Joint Convention on the Safety of Spent Fuel...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    National Report Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management National Report Joint Convention on the Safety of Spent ...

  11. Second National Report for the Joint Convention on the Safety...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Second National Report for the Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management Second National Report for the Joint ...

  12. Fourth National Report for the Joint Convention on the Safety...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Fourth National Report for the Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management Fourth National Report for the Joint ...

  13. United States and Japan Sign Joint Nuclear Energy Action Plan...

    Office of Environmental Management (EM)

    Japan Sign Joint Nuclear Energy Action Plan to Promote Nuclear Energy Cooperation United States and Japan Sign Joint Nuclear Energy Action Plan to Promote Nuclear Energy ...

  14. US, Russian Federation Sign Joint Statement on Reactor Conversion...

    Office of Environmental Management (EM)

    US, Russian Federation Sign Joint Statement on Reactor Conversion US, Russian Federation Sign Joint Statement on Reactor Conversion June 26, 2012 - 12:00pm Addthis News Media ...

  15. "Bionic" Liquids from Lignin: Joint BioEnergy Institute Results...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Bionic" Liquids from Lignin: Joint BioEnergy Institute Results Pave the Way for ... Combustion Research Facility Joint BioEnergy Institute Research Engineering and ...

  16. Joint Venture Established Between Russian Weapons Plant And the...

    National Nuclear Security Administration (NNSA)

    Jobs Apply for Our Jobs Our Jobs Working at NNSA Blog Home Library Press Releases Joint Venture Established Between Russian Weapons Plant ... Joint Venture Established...

  17. International Power Girasolar joint company | Open Energy Information

    Open Energy Info (EERE)

    search Name: International Power Girasolar joint company Sector: Solar Product: Joint venture announced between US IPWG and Netherlands-headquartered Girasolar, to...

  18. DOE Project Scorecards

    Broader source: Energy.gov [DOE]

    DOE Project Scorecards DOE project scorecards summarize capital asset project performance compared to the current approved baseline. 

  19. DOE Sustainability SPOtlight

    Office of Energy Efficiency and Renewable Energy (EERE)

    Newsletter highlights the recipients of the U.S. Department of Energy (DOE) Sustainability Performance Office (SPO) 2014 Sustainability Awards.

  20. DOE TEAM Initiative

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Presented by: Geoffrey C. Bell, PE Geoffrey C. Bell, PE High Tech Buildings High Tech Buildings ~ ~ Berkeley Fume Hood Berkeley Fume Hood ~ ~ Aerosol Duct Sealing Aerosol Duct Sealing DOE TEAM Initiative DOE TEAM Initiative Facilities and Environmental Energy Technologies Facilities and Environmental Energy Technologies 1 Facilities and Environmental Energy Technologies Facilities and Environmental Energy Technologies 2 DOE TEAM Initiative DOE TEAM Initiative High Tech Buildings High Tech

  1. DOE ECR Report 2006

    Office of Environmental Management (EM)

    | Department of Energy Does Not Oppose Petitions to Intervene in Yucca Mountain NRC Proceeding DOE Does Not Oppose Petitions to Intervene in Yucca Mountain NRC Proceeding March 30, 2010 - 9:57am Addthis The U.S. Department of Energy yesterday filed with the Nuclear Regulatory Commission a response to Petitions to Intervene filed by several parties seeking to oppose the Department's motion to withdraw its license application for a nuclear waste repository at Yucca Mountain. DOE said it is

  2. Extension of DOE Directives

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2004-02-12

    The following directives are extended until 8-12-04. DOE N 205.2, Foreign National Access to DOE Cyber Systems, dated 11/1/99. DOE N 205.3, Password Generation, Protection, and Use, dated 11/23/99.

  3. Extension of DOE Directives

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2003-02-24

    This Notice extends the following directives until 2/16/04: DOE N 205.2, Foreign National Access to DOE Cyber Systems, and DOE N 205.3, Password Generation, Protection, and Use, dated 11/23/99-7/1/00.

  4. Extension of DOE Directives

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2004-08-12

    The following directives are extended until 8-12-05: DOE N 205.2, Foreign National Access to DOE Cyber Security Systems, dated 11-1-99 and DOE N 205.3, Password Generation, Protection, and Use, dated 11-23-99. No cancellations.

  5. Extension of DOE Directives

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2005-09-15

    Effective immediately, DOE N 205.2, Foreign National Access to DOE Cyber Systems, dated 11-1-99, and DOE N 205.3, Password Generation, Protection, and Use, dated 11-23-99, are extended until 9-30-06, unless sooner rescinded.

  6. Genomics on the Half Shell: So, What do Oysters Have to do with Energy? (2010 JGI User Meeting)

    ScienceCinema (OSTI)

    Hedgecock, Dennis

    2011-04-26

    Dennis Hedgecock from the University of Southern California answers the question, "Genomics on the Half Shell: So, What Do Oysters Have to Do with Energy?" on March 24, 2010 at the 5th Annual DOE JGI User Meeting

  7. Joint Implementation Network (JIN) | Open Energy Information

    Open Energy Info (EERE)

    2.2 JIN Programs 3 References About Joint Implementation Network (JIN) was established in 1995 as knowledge centre for climate change policy issues in general and the concept of...

  8. Joint Actinide Shock Physics Experimental Research - JASPER

    SciTech Connect (OSTI)

    2014-10-31

    Commonly known as JASPER the Joint Actinide Shock Physics Experimental Research facility is a two stage light gas gun used to study the behavior of plutonium and other materials under high pressures, temperatures, and strain rates.

  9. Joint Actinide Shock Physics Experimental Research - JASPER

    ScienceCinema (OSTI)

    None

    2015-01-09

    Commonly known as JASPER the Joint Actinide Shock Physics Experimental Research facility is a two stage light gas gun used to study the behavior of plutonium and other materials under high pressures, temperatures, and strain rates.

  10. DOE Testing Reveals Samsung Refrigerator Does Not Meet Energy...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Reveals Samsung Refrigerator Does Not Meet Energy Star Requirements DOE Testing Reveals Samsung Refrigerator Does Not Meet Energy Star Requirements March 16, 2010 - 4:28pm Addthis...

  11. DOE Science Showcase - DOE's Smart Grid Research | OSTI, US Dept...

    Office of Scientific and Technical Information (OSTI)

    DOE Technology Transfer E-print Network Science Conference Proceedings Science Open Access Journals DOE Green Energy Related links of interest DOE Office of Electricity Delivery & ...

  12. DOE/EM-51

    Office of Environmental Management (EM)

    | Department of Energy DOE/EIS-0463 and EIS-0463-S1: EPA Notice of Public Comment Period Extension DOE/EIS-0463 and EIS-0463-S1: EPA Notice of Public Comment Period Extension Northern Pass Transmission Line Project, New Hampshire EPA announces that DOE has extended the public comment period for the Draft Environmental Impact Statement for the Northern Pass Transmission Line Project (DOE/EIS-0463) to April 4, 2016. Comments submitted to DOE concerning the Northern Pass Draft EIS prior to this

  13. DOE/ORO/2442

    Office of Environmental Management (EM)

    Department of Energy DOE/IG Annual Performance Report FY 2008, Annual Performance Plan FY 2009 DOE/IG Annual Performance Report FY 2008, Annual Performance Plan FY 2009 DOE/IG Annual Performance Report FY 2008, Annual Performance Plan FY 2009 DOE/IG Annual Performance Report FY 2008, Annual Performance Plan FY 2009 (9.84 MB) More Documents & Publications Combined Fiscal Year (FY) 2011 Annual Performance Results and FY 2012 Annual Performance Plan Office Inspector General DOE Annual

  14. Recent DOE Directives Changes

    Broader source: Energy.gov [DOE]

    On September 1, 2009, the Department of Energy (DOE) manuals were revised and issued to correspond with the following recent Contractor Requirements Documents (CRDs) changes to the following Directives: DOE M 205.1-8 Administrative Change 1—Cyber Security Incident Management Manual; DOE M 205.1-7 Administrative Change 1—Security Controls for Unclassified Information Systems Manual; DOE M 205.1-6 Administrative Change 1—Media Sanitization Manual; DOE M 205.1-5 Administrative Change 1—Cyber Security Process Requirements Manual

  15. Videos - Joint Center for Energy Storage Research

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    February 19, 2014, Videos David Willets Visits JCESR UK Universities and Science Minister, David Willetts, visited Argonne National Laboratory and the Joint Center for Energy Storage Research (JCESR). Read More December 18, 2013, Videos Clean Energy 2030: Building a Sustainable Future JCESR Director George Crabtree discusses the future of clean energy in "Clean Energy 2030: Building a Sustainable Future," a UChicago - Argonne - Fermilab Joint Speaker Series Event held at Argonne. Read

  16. CHARACTERIZATION OF DAMPING IN BOLTED LAP JOINTS

    SciTech Connect (OSTI)

    C. MALONEY; D. PEAIRS; ET AL

    2000-08-01

    The dynamic response of a jointed beam was measured in laboratory experiments. The data were analyzed and the system was mathematically modeled to establish plausible representations of joint damping behavior. Damping is examined in an approximate, local linear framework using log decrement and half power bandwidth approaches. in addition, damping is modeled in a nonlinear framework using a hybrid surface irregularities model that employs a bristles-construct. Experimental and analytical results are presented.

  17. Hydrogen and Fuel Cell Transit Bus Evaluations: Joint Evaluation Plan for

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    the U.S. Department of Energy and the Federal Transit Administration | Department of Energy Administration Hydrogen and Fuel Cell Transit Bus Evaluations: Joint Evaluation Plan for the U.S. Department of Energy and the Federal Transit Administration This document describes the hydrogen transit bus evaluations performed by the National Renewable Energy Laboratory (NREL) and funded by the U.S. Department of Energy (DOE) and the U.S. Department of Transportation's Federal Transit Administration

  18. Hydrogen and Fuel Cell Transit Bus Evaluations: Joint Evaluation Plan for

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    the U.S. Department of Energy and the Federal Transit Administration; Appendix | Department of Energy Administration; Appendix Hydrogen and Fuel Cell Transit Bus Evaluations: Joint Evaluation Plan for the U.S. Department of Energy and the Federal Transit Administration; Appendix This document describes the hydrogen transit bus evaluations performed by the National Renewable Energy Laboratory (NREL) and funded by the U.S. Department of Energy (DOE) and the U.S. Department of Transportation's

  19. Integrated Genome-Based Studies of Shewanella Ecophysiology

    SciTech Connect (OSTI)

    Andrei L. Osterman, Ph.D.

    2012-12-17

    Integration of bioinformatics and experimental techniques was applied to mapping and characterization of the key components (pathways, enzymes, transporters, regulators) of the core metabolic machinery in Shewanella oneidensis and related species with main focus was on metabolic and regulatory pathways involved in utilization of various carbon and energy sources. Among the main accomplishments reflected in ten joint publications with other participants of Shewanella Federation are: (i) A systems-level reconstruction of carbohydrate utilization pathways in the genus of Shewanella (19 species). This analysis yielded reconstruction of 18 sugar utilization pathways including 10 novel pathway variants and prediction of > 60 novel protein families of enzymes, transporters and regulators involved in these pathways. Selected functional predictions were verified by focused biochemical and genetic experiments. Observed growth phenotypes were consistent with bioinformatic predictions providing strong validation of the technology and (ii) Global genomic reconstruction of transcriptional regulons in 16 Shewanella genomes. The inferred regulatory network includes 82 transcription factors, 8 riboswitches and 6 translational attenuators. Of those, 45 regulons were inferred directly from the genome context analysis, whereas others were propagated from previously characterized regulons in other species. Selected regulatory predictions were experimentally tested. Integration of this analysis with microarray data revealed overall consistency and provided additional layer of interactions between regulons. All the results were captured in the new database RegPrecise, which is a joint development with the LBNL team. A more detailed analysis of the individual subsystems, pathways and regulons in Shewanella spp included bioinfiormatics-based prediction and experimental characterization of: (i) N-Acetylglucosamine catabolic pathway; (ii)Lactate utilization machinery; (iii) Novel Nrt

  20. Residual Stress of Bimetallic Joints and Characterization

    Broader source: Energy.gov [DOE]

    2013 DOE Hydrogen and Fuel Cells Program and Vehicle Technologies Program Annual Merit Review and Peer Evaluation Meeting

  1. DOE to Invest $250 Million in New Bioenergy Centers | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    $250 Million in New Bioenergy Centers DOE to Invest $250 Million in New Bioenergy Centers August 2, 2006 - 4:48pm Addthis Basic Genomics Research on the Development of Biofuels to be Accelerated JOLIET, IL - U.S. Department of Energy (DOE) Secretary Samuel W. Bodman announced today that DOE will spend $250 million to establish and operate two new Bioenergy Research Centers to accelerate basic research on the development of cellulosic ethanol and other biofuels. The Secretary made the

  2. Qualification of the Joints for ITER Central Solenoid

    SciTech Connect (OSTI)

    Martovetsky, Nicolai N; Berryhill, Adam B; Kenney, Steven J

    2012-01-01

    The ITER Central Solenoid has 36 interpancake joints, 12 bus joints, and 12 feeder joints in the magnet. The joints are required to have resistance below 4 nOhm at 45 kA at 4.5 K. The US ITER Project Office developed two different types of interpancake joints with some variations in details in order to find a better design, qualify the joints, and establish a fabrication process. We built and tested four samples of the sintered joints and two samples with butt-bonded joints (a total of eight joints). Both designs met the specifications. Results of the joint development, test results, and selection of the baseline design are presented and discussed in the paper.

  3. DOE Plans | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    DOE Plans DOE Plans DOE Strategic Plans Strategic Plan for the Department of Energy Environmental Restoration Strategic Plan (PDF) DOE Chief Information Officer Strategic Plan Chicago Strategic Plan (PDF)

  4. DOE handbook electrical safety

    SciTech Connect (OSTI)

    1998-01-01

    Electrical Safety Handbook presents the Department of Energy (DOE) safety standards for DOE field offices or facilities involved in the use of electrical energy. It has been prepared to provide a uniform set of electrical safety guidance and information for DOE installations to effect a reduction or elimination of risks associated with the use of electrical energy. The objectives of this handbook are to enhance electrical safety awareness and mitigate electrical hazards to employees, the public, and the environment.

  5. DOE Sustainability SPOtlight

    Energy Savers [EERE]

    7 October 2014 U.S. Department of Energy Sustainability Performance Office SUSTAINABILITY ANNOUNCEMENTS SPO Launches Sustainability Dashboard for Data Reporting and Analysis On October 7, the Sustainability Performance Office (SPO) launched the DOE Sustainability Dashboard to serve several important functions for DOE sustainability reporting. The Dashboard maintains historical datasets for each DOE site and National Laboratory and will collect current year data for reporting to the Office of

  6. DOE's Tribal Energy Program

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Tribal Energy Program Review October 23, 2006 Lizana K. Pierce, Project Manager U.S. DOE, Golden Field Office Department of Energy Department of Energy Advancing Energy and National Security through Advancing Energy and National Security through Science, Technology and Environmental Stewardship Science, Technology and Environmental Stewardship 39% 11% 15% 31% 4% NNSA-Nuclear ($9.1) Energy ($2.7) Science ($3.6) Environment ($7.2) Corporate Management ($1.0) DOE FY 2006 Budget DOE FY 2006 Budget

  7. Joint Center for Energy Storage Research - Joint Center for Energy Storage

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Research 30, 2012, Videos Joint Center for Energy Storage Research The Joint Center for Energy Storage Research (JCESR) is a major research partnership that integrates government, academic, and industrial researchers from many disciplines to overcome critical scientific and technical barriers and create new breakthrough energy storage technology.

  8. Robust, Multifunctional Joint for Large Scale Power Production Stacks -

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Energy Innovation Portal Robust, Multifunctional Joint for Large Scale Power Production Stacks Lawrence Berkeley National Laboratory Contact LBL About This Technology DIAGRAM OF BERKELEY LAB'S MULTIFUNCTIONAL JOINT DIAGRAM OF BERKELEY LAB'S MULTIFUNCTIONAL JOINT Technology Marketing SummaryBerkeley Lab scientists have developed a multifunctional joint for metal supported, tubular SOFCs that divides various joint functions so that materials and methods optimizing each function can be chosen

  9. Details | netl.doe.gov

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Release Date: Contact: Shelley Martin, DOE National Energy Technology Laboratory, 304-285-0228, contact.publicaffairs@netl.doe.gov

  10. Home | DOE Data Explorer

    Office of Scientific and Technical Information (OSTI)

    Discover science, technology, engineering research and data collections from the US Department of Energy Search DOE Data Explorer for Energy and Science Data Search For Terms: Find...

  11. About / FAQ | DOE PAGES

    Office of Scientific and Technical Information (OSTI)

    ... Now, through DOE PAGESBeta, OSTI is collecting, archiving and making publicly accessible the "gold standard" of scientific communication - peer-reviewed journal articles or final ...

  12. NNMCAB Responses from DOE

    Broader source: Energy.gov [DOE]

    Provides a listing of responses from the U.S. Department of Energy (DOE) to the recommendations provided from the Northern New Mexico Citizens’ Advisory Board (NNMCAB).

  13. 2016 DOE Sustainability Awards

    Office of Energy Efficiency and Renewable Energy (EERE)

    LM received a 2016 DOE Sustainability Award, in the Waste Reduction and Pollution Prevention category, for groundwater treatment innovations at the Rocky Flats, Colorado, Site. See page 6.

  14. DOE CONTRACTOR PENSION PLANS

    Energy Savers [EERE]

    Contractor's workforce and sponsors the employee pension and benefit plans; or (b) ... DOE-H-200x EMPLOYEE COMPENSATION: PAY AND BENEFITS (a) Contractor Employee Compensation ...

  15. DOE Technical Assistance Program

    Broader source: Energy.gov (indexed) [DOE]

    TAP Webinar eere.energy.gov The Parker Ranch installation in Hawaii DOE Technical Assistance Program Procuring and ... Solar America Communities Solar America Communities is a ...

  16. NNMCAB Recommendations to DOE

    Broader source: Energy.gov [DOE]

    Provides a listing of Northern New Mexico Citizens’ Advisory Board (NNMCAB) recommendations to the U.S. Department of Energy (DOE).

  17. DOE Explosives Safety Manual

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    1996-03-29

    This Manual describes DOE's explosives safety requirements applicable to operations involving the development, testing, handling, and processing of explosives or assemblies containing explosives.

  18. DOE EERE Small Business Programm Success Story - BCS

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    BCS BCS, Incorporated (BCS) is a partner in the Clean Energy Communications joint venture, which was awarded a prime contract with the U.S. Department of Energy's (DOE's) Office of Energy Efficiency and Renewable Energy (EERE) in 2014 to provide communications support services. Through this multi-year contract, BCS has successfully provided services supporting EERE in effectively communicating its technology programs, initiatives, and accomplishments to the American public, industries, Congress,

  19. Qualification of the Joints for the ITER Central Solenoid

    SciTech Connect (OSTI)

    Martovetsky, N; Berryhill, A; Kenney, S

    2011-09-01

    The ITER Central Solenoid has 36 interpancake joints, 12 bus joints, and 12 feeder joints in the magnet. The joints are required to have resistance below 4 nOhm at 45 kA at 4.5 K. The US ITER Project Office developed two different types of interpancake joints with some variations in details in order to find a better design, qualify the joints, and establish a fabrication process. We built and tested four samples of the sintered joints and two samples with butt-bonded joints (a total of eight joints). Both designs met the specifications. Results of the joint development, test results, and selection of the baseline design are presented and discussed in the paper. The ITER Central Solenoid (CS) consists of six modules. Each module is composed of six wound hexapancakes and one quadrapancake. The multipancakes are connected electrically and hydraulically by in-line interpancake joints. The joints are located at the outside diameter (OD) of the module. Cable in conduit conductor (CICC) high-current joints are critical elements in the CICC magnets. In addition to low resistivity, the CS joints must fit a space envelope equivalent to the regular conductor cross section and must have low hydraulic impedance and enough structural strength to withstand the hoop and compressive forces during operation, including cycling. This paper is the continuation of the work reported on the intermodule joints.

  20. Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

    SciTech Connect (OSTI)

    Condon, Bradford J.; Leng, Yueqiang; Wu, Dongliang; Bushley, Kathryn E.; Ohm, Robin A.; Otillar, Robert; Martin, Joel; Schackwitz, Wendy; Grimwood, Jane; MohdZainudin, NurAinlzzati; Xue, Chunsheng; Wang, Rui; Manning, Viola A.; Dhillon, Braham; Tu, Zheng Jin; Steffenson, Brian J.; Salamov, Asaf; Sun, Hui; Lowry, Steve; LaButti, Kurt; Han, James; Copeland, Alex; Lindquist, Erika; Barry, Kerrie; Schmutz, Jeremy; Baker, Scott E.; Ciuffetti, Lynda M.; Grigoriev, Igor V.; Zhong, Shaobin; Turgeon, B. Gillian

    2013-01-24

    The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely related Setosphaeria turcica were sequenced at the Joint Genome Institute (JGI). The datasets were used to identify SNPs between strains and species, unique genomic regions, core secondary metabolism genes, and small secreted protein (SSP) candidate effector encoding genes with a view towards pinpointing structural elements and gene content associated with specificity of these closely related fungi to different cereal hosts. Whole-genome alignment shows that three to five of each genome differs between strains of the same species, while a quarter of each genome differs between species. On average, SNP counts among field isolates of the same C. heterostrophus species are more than 25 higher than those between inbred lines and 50 lower than SNPs between Cochliobolus species. The suites of nonribosomal peptide synthetase (NRPS), polyketide synthase (PKS), and SSP encoding genes are astoundingly diverse among species but remarkably conserved among isolates of the same species, whether inbred or field strains, except for defining examples that map to unique genomic regions. Functional analysis of several strain-unique PKSs and NRPSs reveal a strong correlation with a role in virulence.

  1. State of the Art for Autonomous Detection Systems using Genomic Sequencing

    Office of Scientific and Technical Information (OSTI)

    (Conference) | SciTech Connect State of the Art for Autonomous Detection Systems using Genomic Sequencing Citation Details In-Document Search Title: State of the Art for Autonomous Detection Systems using Genomic Sequencing Authors: Detter, John C. [1] + Show Author Affiliations Los Alamos National Laboratory Publication Date: 2013-07-09 OSTI Identifier: 1087610 Report Number(s): LA-UR-13-25114 DOE Contract Number: AC52-06NA25396 Resource Type: Conference Resource Relation: Conference: DHS

  2. DOE standard: Radiological control

    SciTech Connect (OSTI)

    Not Available

    1999-07-01

    The Department of Energy (DOE) has developed this Standard to assist line managers in meeting their responsibilities for implementing occupational radiological control programs. DOE has established regulatory requirements for occupational radiation protection in Title 10 of the Code of Federal Regulations, Part 835 (10 CFR 835), ``Occupational Radiation Protection``. Failure to comply with these requirements may lead to appropriate enforcement actions as authorized under the Price Anderson Act Amendments (PAAA). While this Standard does not establish requirements, it does restate, paraphrase, or cite many (but not all) of the requirements of 10 CFR 835 and related documents (e.g., occupational safety and health, hazardous materials transportation, and environmental protection standards). Because of the wide range of activities undertaken by DOE and the varying requirements affecting these activities, DOE does not believe that it would be practical or useful to identify and reproduce the entire range of health and safety requirements in this Standard and therefore has not done so. In all cases, DOE cautions the user to review any underlying regulatory and contractual requirements and the primary guidance documents in their original context to ensure that the site program is adequate to ensure continuing compliance with the applicable requirements. To assist its operating entities in achieving and maintaining compliance with the requirements of 10 CFR 835, DOE has established its primary regulatory guidance in the DOE G 441.1 series of Guides. This Standard supplements the DOE G 441.1 series of Guides and serves as a secondary source of guidance for achieving compliance with 10 CFR 835.

  3. Stories of Discovery & Innovation: From Human Genome to Materials...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    From Human Genome to Materials "Genome" Energy Frontier Research Centers (EFRCs) EFRCs ... Stories of Discovery & Innovation: From Human Genome to Materials "Genome" Print Text ...

  4. Fungal Genome Sequencing and Bioenergy

    SciTech Connect (OSTI)

    Schadt, Christopher Warren; Baker, Scott; Thykaer, Jette; Adney, William S; Brettin, Tom; Brockman, Fred; Dhaeseleer, Patrick; Martinez, A diego; Miller, R michael; Rokhsar, Daniel; Torok, Tamas; Tuskan, Gerald A; Bennett, Joan; Berka, Randy; Briggs, Steven; Heitman, Joseph; Rizvi, L; Taylor, John; Turgeon, Gillian; Werner-Washburne, Maggie; Himmel, Michael

    2008-01-01

    To date, the number of ongoing filamentous fungal genome sequencing projects is almost tenfold fewer than those of bacterial and archaeal genome projects. The fungi chosen for sequencing represent narrow kingdom diversity; most are pathogens or models. We advocate an ambitious, forward-looking phylogenetic-based genome sequencing program, designed to capture metabolic diversity within the fungal kingdom, thereby enhancing research into alternative bioenergy sources, bioremediation, and fungal-environment interactions.

  5. Fungal Genome Sequencing and Bioenergy

    SciTech Connect (OSTI)

    Baker, Scott; Thykaer, Jette; Adney, William S; Brettin, Tom; Brockman, Fred; Dhaeseleer, Patrick; Martinez, A diego; Miller, R michael; Rokhsar, Daniel; Schadt, Christopher Warren; Torok, Tamas; Tuskan, Gerald A; Bennett, Joan; Berka, Randy; Briggs, Steven; Heitman, Joseph; Taylor, John; Turgeon, Gillian; Werner-Washburne, Maggie; Himmel, Michael E

    2008-01-01

    To date, the number of ongoing filamentous fungal genome sequencing projects is almost tenfold fewer than those of bacterial and archaeal genome projects. The fungi chosen for sequencing represent narrow kingdom diversity; most are pathogens or models. We advocate an ambitious, forward-looking phylogenetic-based genome sequencing program, designed to capture metabolic diversity within the fungal kingdom, thereby enhancing research into alternative bioenergy sources, bioremediation, and fungal-environment interactions. Published by Elsevier Ltd on behalf of The British Mycological Society.

  6. Active DOE Technical Standards

    Office of Environmental Management (EM)

    ca on of Instructors James O'Brien DOE-HDBK-1002-96 Guide to Good Prac ces for Training and Quali ca on of Chemical Operators James O'Brien DOE-HDBK-1003-96 Guide to Good Prac ces ...

  7. DOE Explosives Safety Manual

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2006-01-09

    The Manual describes the Departments explosive safety requirements applicable to operations involving the development, testing, handling, and processing of explosives or assemblies containing explosives. Cancels DOE M 440.1-1. Canceled by DOE O 440.1B Chg 1.

  8. DOE International Energy Advisors

    Broader source: Energy.gov [DOE]

    DOE’s Office of Electricity Delivery and Energy Reliability's (OE) Infrastructure Security and Energy Restoration Division (ISER) has coordinated and executed interagency support agreements with five of the geographic Combatant Commands to assign a DOE representative — a DOE Energy Advisor — to each of their headquarters.

  9. 2014 DOE Sustainability Awards

    Office of Energy Efficiency and Renewable Energy (EERE)

    In 2014, the U.S. Department of Energy (DOE) Sustainability Awards recognized 14 teams and individuals representing DOE sites and national laboratories. These winners are being recognized for their outstanding sustainability contributions, including accomplishments in managing pollution, waste, energy, water, and vehicle fleets.

  10. Managing inventory costs through joint procurement programs

    SciTech Connect (OSTI)

    Harlan, T.E. ); Williams, M.C. )

    1992-01-01

    Given current economic and regulatory challenges, utilities are facing the need to manage inventories more efficiently, lower spare parts costs, and reduce the downtime associated with equipment failure. Two programs helping utilities achieve these goals are the Joint Procurement Corporation (JPC) for multicompany purchase of common equipment and services and the pooled inventory management (PIM) program for joint purchase and storage of nuclear generating unit spare parts. Both of these are cooperative programs that decrease the probability of extended plant outages and reduce duplication of effort and/or inventory among participating utilities.

  11. Thomas Moore creates joint invention with MIT

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Thomas Moore creates joint invention with MIT 20 Nov 2009 For Arizona State University (ASU) Professor Thomas Moore, an invitation to guest lecture became a demonstration in a lab which led to a seafood lunch - which led to a joint invention with colleagues from the Massachusetts Institute of Technology (MIT) that contributed to a sustainable energy start-up company. Moore had been asked to speak at a summer course taught by well-known MIT Professor Daniel Nocera and, after the lecture, Moore

  12. U.S.-Japan Joint Statement

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    STATE Office of the Spokesman For Immediate Release August 7, 2003 2003/817 STATEMENT BY PHILIP T. REEKER, DEPUTY SPOKESMAN Joint Statement of The United States and Japan on High-Level Consultations on Climate Change Following is the text of a joint statement released by the U.S. and Japan following the third meeting of High-Level Consultations on Climate Change, in Washington, D.C., August 7, 2003. Under Secretary of State for Global Affairs Paula Dobriansky led the U.S. delegation and Minister

  13. USDA, DOE to Invest up to $18.4 million for Biomass Research, Development

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    and Demonstration Projects | Department of Energy USDA, DOE to Invest up to $18.4 million for Biomass Research, Development and Demonstration Projects USDA, DOE to Invest up to $18.4 million for Biomass Research, Development and Demonstration Projects "USDA and DOE will invest up to $18.4 million, over three years, for 21 biomass research and development (R&D), and demonstration projects" 2007_joint_solicitation.pdf (60.47 KB) More Documents & Publications DOE and USDA

  14. DOE Directives | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Directives DOE Directives DOE O 414.1D, Quality Assurance DOE G 414.1-2B Admin Change 1, Quality Assurance Program Guide DOE O 221.1A, Reporting Fraud, Waste and Abuse to the Office of the Inspector General DOE O 232.2, Occurrence Reporting and Processing of Operations Information DOE O 440.1B, Worker Protection Program for DOE (Including the NNSA) Federal Employees

  15. Radiological Protection for DOE Activities

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    1995-09-29

    Establishes radiological protection program requirements that, combined with 10 CFR 835 and its associated implementation guidance, form the basis for a comprehensive program for protection of individuals from the hazards of ionizing radiation in controlled areas. Extended by DOE N 441.3. Cancels DOE 5480.11, DOE 5480.15, DOE N 5400.13, DOE N 5480.11; please note: the DOE radiological control manual (DOE/EH-0256T)

  16. DOE Directives | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    DOE Directives DOE Directives DOE Directives Initiated by the IG DOE O 221.3A, Establishment of Management Decisions on Office of Inspector General Reports - April 19, 2008 DOE O 221.1A, Reporting Fraud, Waste and Abuse to the Office of Inspector General - April 19, 2008 DOE O 221.2A, Cooperation with the Office of Inspector General - February 25, 2008 DOE O 224.2A, Auditing of Programs and Operations - November 9, 2007

  17. Wide temperature range seal for demountable joints

    DOE Patents [OSTI]

    Sixsmith, H.; Valenzuela, J.A.; Nutt, W.E.

    1991-07-23

    The present invention is directed to a seal for demountable joints operating over a wide temperature range down to liquid helium temperatures. The seal has anti-extrusion guards which prevent extrusion of the soft ductile sealant material, which may be indium or an alloy thereof. 6 figures.

  18. Joint with application in electrochemical devices

    DOE Patents [OSTI]

    Weil, K Scott [Richland, WA; Hardy, John S [Richland, WA

    2010-09-14

    A joint for use in electrochemical devices, such as solid oxide fuel cells (SOFCs), oxygen separators, and hydrogen separators, that will maintain a hermetic seal at operating temperatures of greater than 600.degree. C., despite repeated thermal cycling excess of 600.degree. C. in a hostile operating environment where one side of the joint is continuously exposed to an oxidizing atmosphere and the other side is continuously exposed to a wet reducing gas. The joint is formed of a metal part, a ceramic part, and a flexible gasket. The flexible gasket is metal, but is thinner and more flexible than the metal part. As the joint is heated and cooled, the flexible gasket is configured to flex in response to changes in the relative size of the metal part and the ceramic part brought about by differences in the coefficient of thermal expansion of the metal part and the ceramic part, such that substantially all of the tension created by the differences in the expansion and contraction of the ceramic and metal parts is absorbed and dissipated by flexing the flexible gasket.

  19. Wide temperature range seal for demountable joints

    DOE Patents [OSTI]

    Sixsmith, Herbert; Valenzuela, Javier A.; Nutt, William E.

    1991-07-23

    The present invention is directed to a seal for demountable joints operating over a wide temperature range down to liquid helium temperatures. The seal has anti-extrusion guards which prevent extrusion of the soft ductile sealant material, which may be indium or an alloy thereof.

  20. DOE F 740-MX

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Form 740M (10-88) MANDATORY DATA COLLECTION AUTHORIZED BY 10 CFR 30, 40, 50, 70, 75, 150, Public Laws 83-703, 93-438, 95-91 OMB Control No. 1910-1800 4. REPORTING PERIOD 3. RIS 2. ATTACHMENT TO a. DOE/NRC 741 a. SHIPPER'S RIS b. RECEIVER'S RIS c. TRANS. NO. d. CORR NO. e. PC f. AC g. DATA CODE b. DOE/NRC 742 c. DOE/NRC 742c 5. TRANSACTION DATA 1. NAME 8a. LINE NO. 9. SIGNATURE (See instructions for provisions regarding confidentiality.) To the best of my knowledge and belief, the information