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1

Application of High Performance Computing to the DOE Joint Genomic...  

NLE Websites -- All DOE Office Websites (Extended Search)

Application of High Performance Computing to the DOE Joint Genomic Institute's Data Challenges January 25-26, 2010 DOE Joint Genome Institute, Walnut Creek, CA USA -by invitation...

2

DOE Joint Genome Institute: JGI's Susannah Tringe Receives Prestigious...  

NLE Websites -- All DOE Office Websites (Extended Search)

Energy (DOE) Office of Science Early Career Research Program has awarded a grant to DOE Joint Genome Institute scientist Susannah Green Tringe to conduct genomic studies of...

3

DOE Joint Genome Institute Completes Soybean Genome- Data Released to  

NLE Websites -- All DOE Office Websites (Extended Search)

Press Release: December 8, 2008 Press Release: December 8, 2008 DOE Joint Genome Institute Completes Soybean Genome- Data Released to Advance Biofuel, Food, & Feed Research WALNUT CREEK, CA- The U.S. Department of Energy Joint Genome Institute (DOE JGI) has released a complete draft assembly of the soybean (Glycine max) genetic code, making it widely available to the research community to advance new breeding strategies for one of the world's most valuable plant commodities. Soybean not only accounts for 70 percent of the world's edible protein, but also is an emerging feedstock for biodiesel production. Soybean is second only to corn as an agricultural commodity and is the leading U.S. agricultural export. DOE JGI's interest in sequencing the soybean centers on its use for biodiesel, a renewable, alternative fuel with the highest energy content of

4

DOE Joint Genome Institute: IMG ER Goes Primetime: Provides Expert...  

NLE Websites -- All DOE Office Websites (Extended Search)

that regulate our environment. Scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Biological Data Management and Technology Center...

5

DOE Joint Genome Institute: DOE JGI Releases Expanded Version of  

NLE Websites -- All DOE Office Websites (Extended Search)

28, 2009 28, 2009 DOE JGI Releases Expanded Version of Phytozome.net: Clearinghouse for Comparative Plant Genomics Data WALNUT CREEK, CA-An enhanced version of Phytozome.net, a web portal for comparative plant genomics geared to advance biofuel, food, feed, and fiber research, has been released by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). Phytozome provides a central "hub" for web access to a rapidly growing number of plant genomes, and includes tools for visualization of plant genomes and associated annotations, sequence analysis, and bulk, as well as targeted, plant data retrieval. The gene families available in Phytozome, defined at several evolutionarily significant epochs, provide a framework for the transfer of functional information to important biofuel and

6

DOE Joint Genome Institute: New Genomic Model Defines Microbes by  

NLE Websites -- All DOE Office Websites (Extended Search)

September 8, 2009 September 8, 2009 New Genomic Model Defines Microbes by Diet-Provides Tool for Tracking Environmental Change WALNUT CREEK, CA-In line with the U.S. Department of Energy (DOE) interest in characterizing the biotic factors involved in global carbon cycling, the DOE Joint Genome Institute (JGI) characterizes a diverse array of plants, microorganisms, and the communities in which they reside to inform options for reducing and stabilizing atmospheric greenhouse gases. Through a novel genomic approach detailed in the September 7 online edition and on the cover September 14 of the journal Proceedings of the National Academy of Sciences, an international team of scientists led by the University of New South Wales and the DOE JGI demonstrates how the microbial diversity of the oceans can be analyzed without necessarily

7

DOE Joint Genome Institute 2008 Progress Report  

Science Conference Proceedings (OSTI)

While initially a virtual institute, the driving force behind the creation of the DOE Joint Genome Institute in Walnut Creek, California in the Fall of 1999 was the Department of Energy's commitment to sequencing the human genome. With the publication in 2004 of a trio of manuscripts describing the finished 'DOE Human Chromosomes', the Institute successfully completed its human genome mission. In the time between the creation of the Department of Energy Joint Genome Institute (DOE JGI) and completion of the Human Genome Project, sequencing and its role in biology spread to fields extending far beyond what could be imagined when the Human Genome Project first began. Accordingly, the targets of the DOE JGI's sequencing activities changed, moving from a single human genome to the genomes of large numbers of microbes, plants, and other organisms, and the community of users of DOE JGI data similarly expanded and diversified. Transitioning into operating as a user facility, the DOE JGI modeled itself after other DOE user facilities, such as synchrotron light sources and supercomputer facilities, empowering the science of large numbers of investigators working in areas of relevance to energy and the environment. The JGI's approach to being a user facility is based on the concept that by focusing state-of-the-art sequencing and analysis capabilities on the best peer-reviewed ideas drawn from a broad community of scientists, the DOE JGI will effectively encourage creative approaches to DOE mission areas and produce important science. This clearly has occurred, only partially reflected in the fact that the DOE JGI has played a major role in more than 45 papers published in just the past three years alone in Nature and Science. The involvement of a large and engaged community of users working on important problems has helped maximize the impact of JGI science. A seismic technological change is presently underway at the JGI. The Sanger capillary-based sequencing process that dominated how sequencing was done in the last decade is being replaced by a variety of new processes and sequencing instruments. The JGI, with an increasing number of next-generation sequencers, whose throughput is 100- to 1,000-fold greater than the Sanger capillary-based sequencers, is increasingly focused in new directions on projects of scale and complexity not previously attempted. These new directions for the JGI come, in part, from the 2008 National Research Council report on the goals of the National Plant Genome Initiative as well as the 2007 National Research Council report on the New Science of Metagenomics. Both reports outline a crucial need for systematic large-scale surveys of the plant and microbial components of the biosphere as well as an increasing need for large-scale analysis capabilities to meet the challenge of converting sequence data into knowledge. The JGI is extensively discussed in both reports as vital to progress in these fields of major national interest. JGI's future plan for plants and microbes includes a systematic approach for investigation of these organisms at a scale requiring the special capabilities of the JGI to generate, manage, and analyze the datasets. JGI will generate and provide not only community access to these plant and microbial datasets, but also the tools for analyzing them. These activities will produce essential knowledge that will be needed if we are to be able to respond to the world's energy and environmental challenges. As the JGI Plant and Microbial programs advance, the JGI as a user facility is also evolving. The Institute has been highly successful in bending its technical and analytical skills to help users solve large complex problems of major importance, and that effort will continue unabated. The JGI will increasingly move from a central focus on 'one-off' user projects coming from small user communities to much larger scale projects driven by systematic and problem-focused approaches to selection of sequencing targets. Entire communities of scientists working in a particular field, such as feeds

Gilbert, David

2009-03-12T23:59:59.000Z

8

DOE Joint Genome Institute: Opening New Frontiers: First Volume...  

NLE Websites -- All DOE Office Websites (Extended Search)

in the spirit of his goal of providing "light to the obscure," the Department of Energy Joint Genome Institute (DOE JGI) has published the initial "volume" of the Genomic...

9

Microbial Genomics Data from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer (OSTI)

As of March 2008, The Joint Genome Institute has released 296 Prokaryotic microbial sites, with 216 in finished status.

10

DOE Joint Genome Institute: Soybean Genome Analysis Reveals Pathways for  

NLE Websites -- All DOE Office Websites (Extended Search)

January 13, 2010 January 13, 2010 Soybean Genome Analysis Reveals Pathways for Improving Biodiesel, Disease Resistance, and Reducing Waste Runoff WALNUT CREEK, CA-Soybean, one of the most important global sources of protein and oil, is now the first legume species with a published complete draft genome sequence. The sequence and its analysis appear in the January 14 edition of the journal Nature. The research team comprised 18 institutions, including the U.S. Department of Energy Joint Genome Institute (DOE JGI), the U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS), Purdue University and the University of North Carolina at Charlotte. The DOE, National Science Foundation, USDA and United Soybean Board supported the research. helix made of soybeans

11

DOE Joint Genome Institute: DOE JGI Announces 2011 Community Sequencing  

NLE Websites -- All DOE Office Websites (Extended Search)

October 4, 2010 October 4, 2010 Bigger is Better: DOE JGI Announces 2011 Community Sequencing Program Portfolio The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has selected 35 new genomic sequencing projects for its 2011 Community Sequencing Program (CSP)-a targeted sampling of the planet's biodiversity-to be characterized for bioenergy and environmental applications. A sample of CSP 2011 projects *[see photo credits below] Supported by the Office of Biological and Environmental Research in the DOE Office of Science, the DOE JGI's Community Sequencing Program enables scientists from universities and national laboratories around the world to probe the hidden world of microbes and plants for innovative solutions to the nation's major challenges in energy, climate, and environment. This

12

DOE Joint Genome Institute: Unraveling the Threads: Simplest cotton genome  

NLE Websites -- All DOE Office Websites (Extended Search)

December 19, 2012 December 19, 2012 Unraveling the Threads: Simplest cotton genome offers clues for fiber improvements From the stockings decorating mantles to the new outfits in display windows calling to shoppers, cotton is woven into the fabric of the holiday season. For bioenergy researchers, however, fiber composition matters more than color and texture as each cotton strand is composed of more than two dozen coils of cellulose, a target biomass for next-generation biofuels. In the December 20, 2012 edition of Nature, an international consortium of researchers from 31 institutions including a team from the U.S. Department of Energy Joint Genome Institute (DOE JGI) present a high-quality draft assembly of the simplest cotton (Gossypium raimondii) genome. Additionally,

13

DOE Joint Genome Institute: Genome of Simplest Animal Reveals Ancient  

NLE Websites -- All DOE Office Websites (Extended Search)

21, 2008 21, 2008 Genome of Simplest Animal Reveals Ancient Lineage, Confounding Array of Complex Capabilities WALNUT CREEK, CA-As Aesop said, appearances are deceiving-even in life's tiniest critters. From first detection in the 1880s, clinging to the sides of an aquarium, to its recent characterization by the U.S. Department of Energy Joint Genome Institute (DOE JGI), a simple and primitive animal, Trichoplax adhaerens, appears to harbor a far more complex suite of capabilities than meets the eye. The findings, reported in the August 21 online edition of the journal Nature, establish a group of organisms as a branching point of animal evolution and identify sets of genes, or a "parts list," employed by organisms that have evolved along particular branches.

14

DOE Joint Genome Institute: Preparing for a Thaw: How Arctic...  

NLE Websites -- All DOE Office Websites (Extended Search)

Research) To answer this question, researchers from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), the Earth Sciences Division (ESD) within Berkeley Lab, and the...

15

DOE Joint Genome Institute: Trillions Served: Massive, Complex...  

NLE Websites -- All DOE Office Websites (Extended Search)

the number of burgers served has eclipsed the billion mark, while the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) will now serve up trillions of nucleotides of...

16

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Martinez, D. , et al. Genome sequencing and analysis of thegroup, the HudsonAlpha Genome Sequencing Center, will expandnext-genera- tion genome sequencing and add capabilities to

Gilbert, David

2009-01-01T23:59:59.000Z

17

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

biofuel production. Diatom Genome Helps Explain Their Success in Capturing Carbon Diatoms, mighty microscopic algae,

Gilbert, David

2009-01-01T23:59:59.000Z

18

DOE Joint Genome Institute | U.S. DOE Office of Science (SC)  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute DOE Joint Genome Institute Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3251 F: (301)

19

DOE Joint Genome Institute: 2013 DOE JGI Community Sequencing...  

NLE Websites -- All DOE Office Websites (Extended Search)

transposon mutagenesis (TnSeq), a method of generating large sets of random mutations in target DNA. These techniques will allow the DOE JGI to study in greater depth the genomes...

20

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

JGI Mission Areas Bioenergy Carbon Cycling BiogeochemistryJGI User Community DOE Bioenergy Research Center Sequencinginteractions with the DOE Bioenergy Research Centers, and

Gilbert, David

2009-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


21

Today, DOE's Joint Genome Institute (a  

NLE Websites -- All DOE Office Websites (Extended Search)

characterizing the basic principles and relationships underlying living systems. Social Impact: Armed with the DNA sequence of the human genome, scientists will be able to...

22

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

proteins for biofuel production. Trends in Mi- crobiology,could help improve biofuel production. Diatom Genome Helpsa key target. Current biofuel production meth- ods, such as

Gilbert, David

2009-01-01T23:59:59.000Z

23

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Paterson, A. , et al. The Sorghum bicolor genome and thethe 730-million nucleotide Sorghum bicolor sequence, and thesoybean, eucalyp- tus, sorghum, foxtail millet, cassava,

Gilbert, David

2009-01-01T23:59:59.000Z

24

Illumina Production Sequencing at the DOE Joint Genome Institute - Workflow and Optimizations  

E-Print Network (OSTI)

Production Sequencing at DOE Joint Genome Institute –U.S. Department of Energy (DOE) Joint Genome Institute’s (DNA sequence to support the DOE mission areas of renewable

Tarver, Angela

2010-01-01T23:59:59.000Z

25

DOE Joint Genome Institute: Biofuel-Producing Bacteria, Insect Gut  

NLE Websites -- All DOE Office Websites (Extended Search)

June 29, 2009 June 29, 2009 Biofuel-Producing Bacteria, Insect Gut Microbes, ~ 70 other Projects Fill DOE Joint Genome Institute 2010 Pipeline WALNUT CREEK, CA-The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has selected 71 new genomic sequencing projects for its 2010 Community Sequencing Program (CSP)-a targeted sampling of the planet's biodiversity-to be characterized for bioenergy, climate, and environmental applications. JGI's Community Sequencing Program is the largest genomic sequencing effort in the world focused on nonmedical organisms, enabling scientists from universities and national laboratories to probe the hidden world of microbes and plants to tap nature's ingenuity for innovative solutions to the nation's major challenges in energy, climate, and environment. The

26

Seventh Annual DOE Joint Genome Institute User Meeting Sponsored By  

NLE Websites -- All DOE Office Websites (Extended Search)

Seventh Annual Seventh Annual DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 20-22, 2012 Walnut Creek Marriott Walnut Creek, California Contents Speaker Presentations .......................................................................................................... 1 Poster Presentations ........................................................................................................... 13 Attendees ............................................................................................................................ 83 Author Index ....................................................................................................................... 89 Abstracts alphabetical by speaker

27

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

into operating as a user facility, the DOE JGI modeleditself after other DOE user facilities, such as synchro-s approach to being a user facility is based on the concept

Gilbert, David

2009-01-01T23:59:59.000Z

28

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Genomics of cellulosic biofuels. Nature, 454 (7206):841-845,2008 Termite Bellies and Biofuels (Published in Smithsonian,in the quest for viable biofuels. An estimated 10,000 marine

Gilbert, David

2009-01-01T23:59:59.000Z

29

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

ries Oak Ri a ato nt o DO me e DOE l labor amos, onAlph ar tio teg ac ana hem dP or B DOE m ogeoc ides in tional achesmanufacturer, or otherwise, does not necessarily constitute

Gilbert, David

2009-01-01T23:59:59.000Z

30

DOE Joint Genome Institute: DNA of Uncultured Organisms Sequenced Using  

NLE Websites -- All DOE Office Websites (Extended Search)

21, 2009 21, 2009 DNA of Uncultured Organisms Sequenced Using Novel Single-Cell Approach Download a Podcast of this Release! WALNUT CREEK, CA-Scientists from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Bigelow Laboratory for Ocean Sciences have assembled high quality, contamination-free draft genomes of uncultured biodegrading microorganisms using a novel single cell genome sequencing approach. This proof of principle study, published in the April 23 edition of the journal PLoS One, offers researchers a new method to access and decipher the information embedded in genomes of interest with only minute quantities of DNA. "Most of the microbial genomes sequenced to date are derived from organisms cultured in the laboratory," said DOE JGI Director Eddy Rubin.

31

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

National Labora- tory (PNNL), and the HudsonAlpha InstituteLand JGI Paci?c Northwest National Laboratory (PNNL) Since2004, PNNL has collaborated with DOE JGI in the area of

Gilbert, David

2009-01-01T23:59:59.000Z

32

DOE Joint Genome Institute: Next Gen Sequencing Technology Pinpoint  

NLE Websites -- All DOE Office Websites (Extended Search)

February 12, 2009 February 12, 2009 Next Gen Sequencing Technology Pinpoint "On-Off Switches" in Genomes WALNUT CREEK, CA-Scientists from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), Lawrence Berkeley National Laboratory, and the University of California, San Diego have developed a set of molecular tools that provide important insight into the complex genomes of multicellular organisms. The strategy promises to clarify the longstanding mystery of the role played by vast stretches of DNA sequence that do not code for the functional units-genes-that nevertheless may have a powerful regulatory influence. The research is described in the 12 February edition of the journal Nature. DOE bioenergy researchers have an interest in identifying these regulatory

33

DOE Joint Genome Institute: Scientists Publish Complete Genetic Blueprint  

NLE Websites -- All DOE Office Websites (Extended Search)

January 28, 2009 January 28, 2009 Scientists Publish Complete Genetic Blueprint of Key Biofuels Crop WALNUT CREEK, CA-Scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and several partner institutions have published the sequence and analysis of the complete genome of sorghum, a major food and fodder plant with high potential as a bioenergy crop. The genome data will aid scientists in optimizing sorghum and other crops not only for food and fodder use, but also for biofuels production. The comparative analysis of the sorghum genome appears in the January 29 edition of the journal Nature. Prized for its drought resistance and high productivity, sorghum is currently the second most prevalent biofuels crop in the United States, behind corn. Grain sorghum produces the same amount of ethanol per bushel

34

Eukaryotic Genomics Data from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer (OSTI)

From the JGI webportal users can choose Eukaryotic genomes from a photo list, access the JGI FTP directories to download data files, use the Tree of Life navigation tool, or choose a genome and go directly to a website specific to that one genome. The individual sites include direct access to download sequence files, BLAST, search, view and navigate the genomic annotations.

35

DOE Joint Genome Institute: Establishing Standard Definitions for Genome  

NLE Websites -- All DOE Office Websites (Extended Search)

October 8, 2009 October 8, 2009 Establishing Standard Definitions for Genome Sequences Download a podcast of this release! WALNUT CREEK, CA-In 1996, researchers from major genome sequencing centers around the world convened on the island of Bermuda and defined a finished genome as a gapless sequence with a nucleotide error rate of one or less in 10,000 bases. This effectively set the quality target for the human genome effort and was quickly applied to other genome projects. If a genome sequence didn't meet this stringent criterion, it was simply considered a "draft." More than a decade later, researchers are finding that with the advent of the latest sequencing technologies the terms "draft" and "finished" are no longer sufficient to describe the varying levels of genome sequence

36

DOE Joint Genome Institute: Brown Tide Culprit Sequenced: Genome...  

NLE Websites -- All DOE Office Websites (Extended Search)

Culprit Sequenced: Genome of the First of Algal Bloom Species WALNUT CREEK, Calif.- Algae play key roles in the global carbon cycle, helping sequester significant amounts of...

37

DOE Joint Genome Institute: Breaking down cellulose without blasting  

NLE Websites -- All DOE Office Websites (Extended Search)

4, 2011 4, 2011 Breaking down cellulose without blasting lignin: "Dry rot" genome offers lessons for biofuel pretreatment WALNUT CREEK, Calif.-Feared by realtors and homeowners alike, dry rot due to the fungus Serpula lacrymans causes millions of dollars worth of damage to homes and buildings around the world. This brown rot fungus' capacity to break down the cellulose in wood led to its selection for sequencing by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) in 2007, with the goal of identifying the enzymes involved in the degradation process and using the information to improve cellulosic biofuels production. Photo: A variant of Serpula lacrymans causes dry rot. (Dave Brown via Flickr/Creative Commons Attribution 2.0) As reported online July 14 in Science Express, an international team of

38

DOE Joint Genome Institute: Spikemoss Genome Offers New Paths...  

NLE Websites -- All DOE Office Websites (Extended Search)

5, 2011 Spikemoss Genome Offers New Paths for Biofuels Research--Bridges Plant Development Gap WALNUT CREEK, Calif.- It's not quite Christmas, but the DNA sequence of a small plant...

39

DOE Joint Genome Institute: Breaking Biomass Better, DOE JGI...  

NLE Websites -- All DOE Office Websites (Extended Search)

12, 2010 Breaking Biomass Better: DOE JGI Sequences Wood Decaying Fungus to Advance Biofuels Prospects WALNUT CREEK, CA-One of the challenges in making cellulosic biofuels...

40

DOE Joint Genome Institute: Peach Genome Offers Insights into Breeding  

NLE Websites -- All DOE Office Websites (Extended Search)

March 24, 2013 March 24, 2013 Peach Genome Offers Insights into Breeding Strategies for Biofuels Crops Rapidly growing trees like poplars and willows are candidate "biofuel crops" from which it is expected that cellulosic ethanol and higher energy content fuels can be efficiently extracted. Domesticating these crops requires a deep understanding of the physiology and genetics of trees, and scientists are turning to long-domesticated fruit trees for hints. The relationship between a peach and a poplar may not be obvious at first glance, but to botanists both trees are part of the rosid superfamily, which includes not only fruit crops like apples, strawberries, cherries, and almonds, but many other plants as well, including rose that gives the superfamily its name.

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


41

DOE Joint Genome Institute: Model Microbial Community for Studying  

NLE Websites -- All DOE Office Websites (Extended Search)

October 22, 2009 October 22, 2009 Model Microbial Community for Studying Expanding Dead Zones Characterized WALNUT CREEK, CA-Among the many changes in the ocean is the expansion of oxygen-deficient or oxygen minimum zones (OMZs), also known as dead zones, which affect the processes by which carbon is captured and sequestered on the seafloor and alter the microbial activities that impact the rate and magnitude of ocean carbon sequestration. Despite the importance of these effects, very little is known about the metabolism of OMZ microbes and how they respond to environmental changes. In the Oct. 23 issue of the journal Science, researchers from the University of British Columbia and the U.S. Department of Energy Joint Genome Institute (DOE JGI) describe the metagenome of an abundant but

42

DOE Joint Genome Institute: Adaptable Button Mushroom Serves Up  

NLE Websites -- All DOE Office Websites (Extended Search)

8, 2012 8, 2012 Adaptable Button Mushroom Serves Up Biomass-Degrading Genes Critical to Managing the Planet's Carbon Stores The button mushroom occupies a prominent place in our diet and in the grocery store where it boasts a tasty multibillion-dollar niche, while in nature, Agaricus bisporus is known to decay leaf matter on the forest floor. Now, owing to an international collaboration of two-dozen institutions led by the French National Institute for Agricultural Research (INRA) and the U.S. Department of Energy Joint Genome Institute (DOE JGI), the full repertoire of A. bisporus genes has been determined. In particular, new work shows how its genes are actually deployed not only in leaf decay but also wood decay and in the development of fruiting bodies (the above ground part of the mushroom harvested for food). The work also

43

Integrated Microbial Genomes (IMG) System from the DOE Joint Genome Institute (JGI)  

DOE Data Explorer (OSTI)

The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and annotating genomes, genes and functions, individually or in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through quarterly releases. IMG is provided by the DOE-Joint Genome Institute (JGI) and is available from http://img.jgi.doe.gov. [Abstract from The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions; Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Natalia N. Ivanova and Nikos C. Kyrpides; Nucleic Acids Research, 2008, Vol. 36. (Database Issue) See also the companion system, Integrated Microbial Genomes with Microbiome Samples.

44

DOE Joint Genome Institute: A DOE Office of Science User Facility of  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute DOE Joint Genome Institute Latest News R. irregularis December 20, 2013 A gluttonous plant reveals how its cellular power plant devours foreign DNA. Amborella trichopoda, a sprawling shrub that grows on just a single island in the remote South Pacific, is the only plant in its family and genus. It is also one of the oldest flowering plants, having branched off from others about 200 million years ago. more... R. irregularis November 25, 2013 How Scavenging Fungi Became a Plant's Best Friend. Glomeromycota is an ancient lineage of fungi that has a symbiotic relationship with roots that goes back nearly 420 million years to the earliest plants. More than two thirds of the world's plants depend on this soil-dwelling symbiotic fungus to survive, including critical agricultural crops such as wheat,

45

Robotic Enrichment Processing of Roche 454 Titanium Emlusion PCR at the DOE Joint Genome Institute  

E-Print Network (OSTI)

of Roche 454 Titanium Emulsion PCR at the DOE Joint GenomeEnrichment of emulsion PCR product is the most laborious andand 2X Enrichment Emulsion PCR Emulsion Breaking Enhancing

Hamilton, Matthew

2010-01-01T23:59:59.000Z

46

DOE Joint Genome Institute: JGI & NERSC Partner for GenomicHigh...  

NLE Websites -- All DOE Office Websites (Extended Search)

April 12, 2010 JGI & NERSC Partner for Genomic High-performance Computing WALNUT CREEK, CA-The Department of Energy Joint Genome Institute (JGI) and the National Energy Research...

47

DOE Joint Genome Institute: Beyond Genomics-DOE JGI leads method  

NLE Websites -- All DOE Office Websites (Extended Search)

September 20, 2010 September 20, 2010 Beyond Genomics-DOE JGI leads method validation effort in Metatranscriptomics Ultra-high throughput DNA sequencing platforms that allow researchers to sequence the genetic code of organisms at lightning speed for just pennies are enabling more focused genomic studies on a massive scale. One example involves the transcriptome, a tiny but complex fraction of the complete genetic sequence that is transcribed into different types of RNA molecules. These molecules provide researchers with information about what genes are turned on and off under various conditions, and what the functions of these genes are. Researchers focus on the messenger RNA (mRNA), which transfer the genetic information from the DNA to functional proteins. The bulk of cellular RNA

48

DOE Joint Genome Institute: A DOE Office of Science User Facility of  

NLE Websites -- All DOE Office Websites

MyJGISubmit ProposalsInternalEmergency InfoCareers MyJGISubmit ProposalsInternalEmergency InfoCareers JGI website People Go Genomes Project List User Programs Sequencing Informatics Systems Education News & Publications Events About Us JGI Home DOE Joint Genome Institute Latest News R. irregularis December 20, 2013 A gluttonous plant reveals how its cellular power plant devours foreign DNA. Amborella trichopoda, a sprawling shrub that grows on just a single island in the remote South Pacific, is the only plant in its family and genus. It is also one of the oldest flowering plants, having branched off from others about 200 million years ago. more... R. irregularis November 25, 2013 How Scavenging Fungi Became a Plant's Best Friend. Glomeromycota is an ancient lineage of fungi that has a symbiotic relationship with roots that

49

DOE Joint Genome Institute: Exploring Standards to Advance Microbial...  

NLE Websites -- All DOE Office Websites (Extended Search)

July 9, 2009 Exploring Standards to Advance Microbial Genomics WALNUT CREEK, CA-Microbes contribute to manifold human endeavors ranging from bioenergy to agriculture to medicine....

50

DOE Joint Genome Institute: Up from the Depths: How Bacteria...  

NLE Websites -- All DOE Office Websites (Extended Search)

to verify the predominant bacterial lineages capable of trapping carbon in this deep underwater region. "This study represents a pristine example for the use of single cell genome...

51

DOE JGI Microbial Genomics & Metagenomics Workshops  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute Microbial Genomics & Metagenomics Workshops Walnut Creek, California The U.S. Department of Energy Joint Genome Institute (DOE JGI) will be offering...

52

DOE Joint Genome Institute. Relative Reference: Foxtail Millet Offers Clues  

NLE Websites -- All DOE Office Websites (Extended Search)

May 14, 2012 May 14, 2012 Relative Reference: Foxtail Millet Offers Clues for Assembling the Switchgrass Genome Arranging DNA fragments into a genome sequence that scientists can interpret is a challenge often compared to assembling a puzzle, except there is no box to provide an idea of what the picture is even supposed to be. Sometimes there's guidance in the form of other publicly-available DNA sequences from related organisms that can be used to guide the assembly process, but its usefulness depends on how closely related any two sequences are to one another. For example, a reference genome might be so distantly related from the one being assembled, it would be akin to comparing a Model-T to a contemporary hybrid car. Foxtail millet Photo: Foxtail millet (S. italica) panicle by Katrien Devos, University of

53

DOE Joint Genome Institute: Same Fungus, Different Strains: A Comparative  

NLE Websites -- All DOE Office Websites (Extended Search)

3, 2011 3, 2011 Same Fungus, Different Strains: A Comparative Genomics Approach for Improved "Green" Chemical Production WALNUT CREEK, Calif.-Fungi play key roles in nature and are valued for their great importance in industry. Consider citric acid, a key additive in several foods and pharmaceuticals produced on a large-scale basis for decades with the help of the filamentous fungus Aspergillus niger. While A. niger is an integral player in the carbon cycle, it possesses an arsenal of enzymes that can be deployed in breaking down plant cell walls to free up sugars that can then be fermented and distilled into biofuel, a process being optimized by U.S. Department of Energy researchers. Susannah Tringe Photo: Aspergillus niger conidiospore by Kathie T. Hodges, Cornell.

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Science Videos from DOE's Joint Genome Institute on YouTube  

DOE Data Explorer (OSTI)

DOE's Joint Genome Institute began posting lab-produced videos on YouTube in September of 2008. Many of JGI's YouTube videos are of speakers' presentations at meetings and workshops; others may be promotional or educational in nature. They are freely available to the public for viewing and can be interactively shared or commented on. Users can subscribe and be notified when new videos are posted to their specific area of interest.

55

DOE Joint Genome Institute: DOE JGI Produces New QC Tool for Microbial  

NLE Websites -- All DOE Office Websites (Extended Search)

May 24, 2010 May 24, 2010 DOE JGI Produces New QC Tool for Microbial Genomes WALNUT CREEK, CA-More than a thousand microbial genomes have been sequenced at various sequencing centers in the past 15 years to better understand their roles in tasks ranging from bioenergy to health to environmental cleanup. Conservative estimates suggest roughly 10,000 microbial genomes will be publicly available within the next two years, but genomic standards have not caught up with the technological advances that have made the sequencing process faster and cheaper. As a result, the torrent of DNA sequences being released has varying levels of quality, which impacts researchers' ability to use this information. To assist in checking the quality of the microbial genomic DNA sequences generated before they are submitted to the federally funded public archive

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JGI Visiting Scientist Program The DOE Joint Genome Institute Visiting Scientist Program (VSP)  

NLE Websites -- All DOE Office Websites (Extended Search)

Visiting Scientist Program Visiting Scientist Program The DOE Joint Genome Institute Visiting Scientist Program (VSP) provides an opportunity for researchers who are seeking to build upon their line of scientific inquiry by leveraging JGI experimental, computational, and personnel resources for genomic research and sequence-based science. Projects include de novo generation of genome data, assistance in interpreting and/or building on an existing data set, or the refining of new technology (e.g., single-cell genomics; metagenomics, etc.). Length of stay depends on complexity of the project being considered and availability of data and other resources. Investigators, post docs, and graduate students participating in approved JGI User Projects are also invited to apply for on-site access to JGI

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DOE Joint Genome Institute. Pulp NonFiction: Fungal Analysis Reveals Clues  

NLE Websites -- All DOE Office Websites (Extended Search)

March 22, 2012 March 22, 2012 Pulp NonFiction: Fungal Analysis Reveals Clues for Targeted Biomass Deconstruction Without fungi and microbes to break down dead trees and leaf litter in nature, the forest floor might look like a scene from TV's "Hoarders." Ceriporiopsis subvermispora mycelium on wood Photo: Scanning electron micrograph of Ceriporiopsis subvermispora mycelium on wood. (R. Blanchette, University of Minnesota) Massive-scale genome sequencing projects supported by the U.S. Department of Energy (DOE) and being carried out at the DOE Joint Genome Institute (JGI) highlight the importance of learning how the cellulose, hemicellulose and lignin that serve as a plant's infrastructure can be broken down by these forest organisms to extract needed nutrients. Among the fungi being

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DOE Joint Genome Institute: Genes from Tiny Algae Shed Light on Big Role  

NLE Websites -- All DOE Office Websites (Extended Search)

April 9, 2009 April 9, 2009 Genes from Tiny Algae Shed Light on Big Role Managing Carbon in World's Oceans & Coping with Environmental Change WALNUT CREEK, CA-Scientists from two-dozen research organizations led by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) and the Monterey Bay Aquarium Research Institute (MBARI) have decoded genomes of two algal strains, highlighting the genes enabling them to capture carbon and maintain its delicate balance in the oceans. These findings, from a team led by Alexandra Z. Worden of MBARI and published in the April 10 edition of the journal Science, will illuminate cellular processes related to algae-derived biofuels being pursued by DOE scientists. The study sampled two geographically diverse isolates of the photosynthetic

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DOE Joint Genome Institute: Mite-y Genomic Resources For Bioenergy Crop  

NLE Websites -- All DOE Office Websites (Extended Search)

23, 2011 23, 2011 Mite-y Genomic Resources For Bioenergy Crop Protection WALNUT CREEK/BERKELEY, Calif.-For a pest that isn't quite the size of a comma on a keyboard, the two-spotted spider mite can do a disproportionate amount of damage. These web-spinners extract the nutrients they need from leaves of more than a thousand different plant species, including bioenergy feedstocks and food staples. The cost of chemically controlling spider mites to counteract reduced harvest yields hovers around $1 billion annually, reflecting their significant economic impact. spider mite Photo: The web-spinning two-spotted spider mite was sequenced at the DOE JGI. (M. Grbic) With a 90-million nucleotide genome, the smallest of those that belong to the group of animals with external skeletons or arthropods, the two-spotted

60

Illumina Production Sequencing at the DOE Joint Genome Institute - Workflow and Optimizations  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy (DOE) Joint Genome Institute?s (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the DOE mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI?s Production Sequencing group, the Illumina Genome Analyzer pipeline has been established as one of three sequencing platforms, along with Roche/454 and ABI/Sanger. Optimization of the Illumina pipeline has been ongoing with the aim of continual process improvement of the laboratory workflow. These process improvement projects are being led by the JGI?s Process Optimization, Sequencing Technologies, Instrumentation& Engineering, and the New Technology Production groups. Primary focus has been on improving the procedural ergonomics and the technicians? operating environment, reducing manually intensive technician operations with different tools, reducing associated production costs, and improving the overall process and generated sequence quality. The U.S. DOE JGI was established in 1997 in Walnut Creek, CA, to unite the expertise and resources of five national laboratories? Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest ? along with HudsonAlpha Institute for Biotechnology. JGI is operated by the University of California for the U.S. DOE.

Tarver, Angela; Fern, Alison; Diego, Matthew San; Kennedy, Megan; Zane, Matthew; Daum, Christopher; Hack, Christopher; Tang, Eric; Deshpande, Shweta; Cheng, Jan-Fang; Roberts, Simon; Alexandre, Melanie; Harmon-Smith, Miranda; Lucas, Susan

2010-06-18T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


61

DOE Joint Genome Institute: Tringe on Popular Science's "Brilliant 10"  

NLE Websites -- All DOE Office Websites (Extended Search)

6, 2011 6, 2011 Tringe on Popular Science's "Brilliant 10" List WALNUT CREEK, Calif.-Susannah Green Tringe of the DOE Joint Genome Institute (DOE JGI) has been named one of 2011's "Brilliant 10," the annual list compiled by Popular Science magazine of top young researchers. In adding her name to the list, which appears in the October issue, the magazine recognized her $2.5 million grant from the DOE Early Career Research Program to study the role of microbial communities in restored wetlands in the San Francisco Bay-Delta region of California and their impact on long-term carbon sequestration. Bigelow's Dashiell Masland working Photo: Tringe wading into the Brilliant 10 list The Popular Science Brilliant 10 recognizes scientists and researchers

62

DOE Joint Genome Institute: Making up the gut microbiome is a host-driven  

NLE Websites -- All DOE Office Websites (Extended Search)

November 16, 2010 November 16, 2010 Making up the gut microbiome is a host-driven project Baking sourdough bread requires a starter, and so do mammalian guts, which are first colonized by microbial communities from the mother and then acquire more microbes over time. These gut microbial communities are important for maintaining health and combating disease, and it's why the Human Microbiome Project launched by the National Institutes of Health in 2008 is studying the microbial communities that populate the human body by sequencing them and assembling a reference catalog, a project that involves researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). G. beringei Photo: G. beringei by rbleib While the HMP was getting off the ground, DOE JGI collaborator Howard

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DOE Joint Genome Institute: Sentinel of Change: Water Flea Genome to  

NLE Websites -- All DOE Office Websites (Extended Search)

February 3, 2011 February 3, 2011 Sentinel of Change: Water Flea Genome to Improve Environmental Monitoring Capabilities WALNUT CREEK, Calif.-A tiny crustacean that has been used for decades to develop and monitor environmental regulations is the first of its kind to have its genetic code sequenced and analyzed-revealing the most gene-packed animal characterized to date. The information deciphered could help researchers develop and conduct real-time monitoring systems of the effects of environmental remediation efforts. Daphnia pulex (commonly called water flea) Photo: Dr. Jan Michels, Christian-Albrechts-University, Kiel Daphnia pulex (commonly called water flea) Considered a keystone species in freshwater ecosystems, the water flea, Daphnia pulex, is roughly the size of the equal sign on a keyboard. Its 200

64

The US Department of Energy Joint Genome Institute Microbial Genome Program  

E-Print Network (OSTI)

Institute A typical genome sequencing project AssemblyInstitute A typical genome sequencing project AssemblyJGI Microbial Sequencing US DOE Joint Genome Institute JGI

Lapidus, Alla

2005-01-01T23:59:59.000Z

65

Illumina GA IIx& HiSeq 2000 Production Sequenccing and QC Analysis Pipelines at the DOE Joint Genome Institute  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy (DOE) Joint Genome Institute's (JGI) Production Sequencing group is committed to the generation of high-quality genomic DNA sequence to support the mission areas of renewable energy generation, global carbon management, and environmental characterization and clean-up. Within the JGI's Production Sequencing group, a robust Illumina Genome Analyzer and HiSeq pipeline has been established. Optimization of the sesequencer pipelines has been ongoing with the aim of continual process improvement of the laboratory workflow, reducing operational costs and project cycle times to increases ample throughput, and improving the overall quality of the sequence generated. A sequence QC analysis pipeline has been implemented to automatically generate read and assembly level quality metrics. The foremost of these optimization projects, along with sequencing and operational strategies, throughput numbers, and sequencing quality results will be presented.

Daum, Christopher; Zane, Matthew; Han, James; Kennedy, Megan; San Diego, Matthew; Copeland, Alex; Li, Mingkun; Lucas, Susan

2011-01-31T23:59:59.000Z

66

DOE Joint Genome Institute: First Wild Grass Species and Model System for  

NLE Websites -- All DOE Office Websites (Extended Search)

February 10, 2010 February 10, 2010 First Wild Grass Species and Model System for Energy Crops Sequenced WALNUT CREEK, CA-As the U.S. Department of Energy (DOE) works toward developing sustainable sources of clean renewable energy, perennial grasses have emerged as major candidates for the commercial production of cellulosic biofuels from feedstocks. However, little is known about the specific biological traits of the grasses that might contribute to their usefulness for energy production, in part because such grasses typically have long lifecycles and possess large, complex genomes, making them difficult to study. Representative genomes for two of the three major subfamilies of grasses-those that include rice, maize, sorghum and sugar cane-have already been sequenced. Now in the February 11 edition of the journal

67

DOE Joint Genome Institute: Fungal Map of Mutations Key to Increasing  

NLE Websites -- All DOE Office Websites (Extended Search)

September 1, 2009 September 1, 2009 Fungal Map of Mutations Key to Increasing Enzyme Production for Bioenergy Use Download a podcast of this release! WALNUT CREEK, CA-In half a century, one fungus has gone from being the bane of the Army quartermasters' existence in the Pacific to industry staple and someday, as part of the U.S. Department of Energy's mission to promote national energy security through clean, renewable energy development, a biofuel producers' best friend. Trichoderma reesei's makeover is due in part to scientific explorations that led to the development of mutant fungal strains that produce large quantities of biomass-degrading enzymes. T. reesei Image: T. reesei, courtesy of Irma Salovuori, VTT Biotechnology Now an international team of researchers led by scientists at the DOE Joint

68

Joint Genome Institute Progress Report 2002-2005  

SciTech Connect

Progress report covering activities at the DOE-Joint Genome Institute in Walnut Creek, California for the period 2002-2005.

Gilbert, David

2005-10-03T23:59:59.000Z

69

Cluster Overview of Archaeal Life (COAL) from the DOE Joint Genome Institute  

DOE Data Explorer (OSTI)

COAL is an acronym for Cluster Overview of Archaeal Life. The purpose of COAL is to visualize protein orthology and to relate orthology with additional information derived from their genomes. This information includes phylogeny, ecotype, metabolism, thermal preference and aerobicity. The protein orthology networks are also subclustered, when possible, using a bipartioning approach based on spectral clustering. COAL clusters are of three types; root, stem and leaf. Enter a cluster number into the Cluster box on the Main COAL page at http://coal.jgi-psf.org/coal/ and click Update. The cluster appears as a network of nodes (proteins) connected by edges representing the orthology. Various information about the cluster will be loaded below the applet, along with information of the individual proteins. Proteins can be highlighted according to the phylogenetic placement of their genomes. Currently, there are four categories of metadata in COAL, oxygen usage (e.g. aerobe, anaerobe), Metabolism (e.g. Chemoorganoheterotroph, Chemolithoautotroph), thermal preference (e.g. hyperthermophile, mesophile) and ecotype (e.g. marine, aquatic).[Taken with liberal editing from the COAL Help page.

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Joint Genome Institute (JGI) Projects at NERSC  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Genome Institute Joint Genome Institute (JGI) Joint Genome Institute (JGI) nicole-illumina-flowcell.jpg Key Challenges: Ensuring that there is a robust computational infrastructure for managing, storing and gleaning scientific insights from the torrent of data that constantly flows from the advanced sequencing platforms at the Department of Energy Joint Genome Institute (JGI). JGI sequencing capacity exceeds 40 billion DNA base pairs per year and is growing at a rate that exceeds computer hardware improvements, with exponential increases in computation and storage needed. JGI will generate about 1 petabyte of data in their first year as a NERSC partner; this is expected to double each year. Why it Matters: JGI is the primary production sequencing facility for the DOE. By revealing the genetic blueprint and fundamental principles that

71

DOE Joint Genome Institute: A Microbiological "Template" for Mitigating  

NLE Websites -- All DOE Office Websites (Extended Search)

July 1, 2011 July 1, 2011 A Microbiological "Template" for Mitigating Methane Emissions WALNUT CREEK, Calif.-Carbon dioxide may be the most name-dropped greenhouse gas, but methane is 20 times more potent. In 2009, the U.S. Environmental Protection Agency calculated that 20 percent of the nation's human-related methane emissions were attributable to livestock digestive processes. In Australia, livestock emissions account for 12 percent of the country's total greenhouse gas emissions. Wallaby Photo:Wallaby, photo by Mehgan Murphy, Smithsonian's National Zoo. To understand how methane is produced in livestock, an international team of scientists including researchers at Australia's Commonwealth Scientific and Industrial Research Organisation (CSIRO) and the DOE JGI

72

The US Department of Energy Joint Genome Institute Microbial Genome Program  

E-Print Network (OSTI)

Community Sequencing Program (CSP). 24 proposals accepted 10http://www.jgi.doe.gov/CSP/ US DOE Joint Genome InstituteGTL) Community Sequencing Program (CSP) JGI Internal Program

Lapidus, Alla

2005-01-01T23:59:59.000Z

73

New Technique Improves Microbial Genome Assembly | U.S. DOE Office...  

Office of Science (SC) Website

FeedbackShare Page Click to enlarge photo. Enlarge Photo Image courtesy of DOE Joint Genome Institute (JGI), Roy Kaltschmidt DOE JGI researchers have helped develop a...

74

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot August 13, 2012 -...

75

Projects Selected for Funding Under the Joint NYSERDA / DOE Energy...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Projects Selected for Funding Under the Joint NYSERDA DOE Energy Storage Initiative Projects Selected for Funding Under the Joint NYSERDA DOE Energy Storage Initiative New York...

76

Genomics, Gene Expression and Other Studies in Soybean Rust  

E-Print Network (OSTI)

Joint Genome Institute Genomics, Gene Expression and otherRust Martha Lucía Posada-Buitrago Ph.D Genomics DivisionEvolutionary Genomics DOE- Joint Genome Institute Lawrence

Posada-Buitrago, Martha Lucia

2005-01-01T23:59:59.000Z

77

Genomic Science | U.S. DOE Office of Science (SC)  

NLE Websites -- All DOE Office Websites (Extended Search)

Biological Biological Systems Science Division (BSSD) » Genomic Science Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building

78

Joint DOE-Rosatom Statement  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Statement Statement on the U.S. - Russian Excess Weapon-grade Plutonium Disposition Program The U.S. Department of Energy (DOE) and the Federal Atomic Energy Agency, Russian Federation (Rosatom), as the Executive Agents for the implementation of the 2000 Plutonium Management and Disposition Agreement, hereby reaffirm their commitment to implementing the 2000 Agreement and effective and transparent disposition of 34 metric tons each of weapon- grade plutonium designated as no longer required for defense purposes. They confirm that the preferred disposition method for such plutonium to implement the 2000 Agreement is irradiation of nuclear fuel in reactors. Their expert groups are directed to: * Provide for the performance of technical analysis that will contribute to both

79

Molluscan Evolutionary Genomics  

E-Print Network (OSTI)

59179 Molluscan Evolutionary Genomics W. Brian Simison andBoore Molluscan Evolutionary Genomics W. Brian Simison andL. Boore Evolutionary Genomics Department, DOE Joint Genome

Simison, W. Brian

2010-01-01T23:59:59.000Z

80

Genomics, Gene Expression and Other Studies in Soybean Rust  

E-Print Network (OSTI)

by Christine Stone GENOME SEQUENCING PROJECT PhakopsoraUS DOE Joint Genome Institute DNA sequencing process LibraryUS DOE Joint Genome Institute DNA sequencing process Rolling

Posada-Buitrago, Martha Lucia

2005-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


81

2012 U.S. Department of Energy: Joint Genome Institute: Progress Report  

Science Conference Proceedings (OSTI)

The mission of the U.S. Department of Energy Joint Genome Institute (DOE JGI) is to serve the diverse scientific community as a user facility, enabling the application of large-scale genomics and analysis of plants, microbes, and communities of microbes to address the DOE mission goals in bioenergy and the environment. The DOE JGI's sequencing efforts fall under the Eukaryote Super Program, which includes the Plant and Fungal Genomics Programs; and the Prokaryote Super Program, which includes the Microbial Genomics and Metagenomics Programs. In 2012, several projects made news for their contributions to energy and environment research.

Gilbert, David [DOE JGI Public Affairs Manager] [DOE JGI Public Affairs Manager

2013-01-01T23:59:59.000Z

82

U.S. Department of Energy Joint Genome Institute Progress Report  

NLE Websites -- All DOE Office Websites (Extended Search)

U.S. Department of Energy Joint Genome Institute Progress Report Sequencing the world of possibilities for energy and the environment Table of Contents DOE JGI Mission ........................................................ 7 Director's Perspective.................................................... 8 DOE Mission Areas ................................................... 12 By the Numbers.......................................................... 14 User Map ............................................................ 15 Scientific Literature/Impact ................................ 16 DOE JGI Sequence Output .............................. 17 DOE JGI Team Science Realized ....................... 18 DOE JGI User Community ............................... 19 User Meeting 5 ...........................................................

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USDA and DOE Fund Genomics Projects For Bioenergy Fuels Research |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Fund Genomics Projects For Bioenergy Fuels Research Fund Genomics Projects For Bioenergy Fuels Research USDA and DOE Fund Genomics Projects For Bioenergy Fuels Research August 9, 2006 - 8:43am Addthis WASHINGTON, DC - Aug. 9, 2006 - Energy Secretary Samuel Bodman and Agriculture Secretary Mike Johanns today announced that the Department of Agriculture and the Department of Energy (DOE) have jointly awarded nine grants totaling $5.7 million for biobased fuels research that will accelerate the development of alternative fuel resources. Bodman commented, "These research projects build upon DOE's strategic investments in genomics, to accelerate scientific discovery and promote the development of alternative energy sources vital to America's energy and economic security." "To be a reliable renewable energy source, farmers and ranchers will need

84

ORISE: Providing Support to the DOE Joint Information Center  

NLE Websites -- All DOE Office Websites (Extended Search)

ORISE Provides Support to DOE's Oak Ridge Office Joint Information Center (JIC) In the event of an emergency, the U.S. Department of Energy (DOE) Oak Ridge Office (ORO) Joint...

85

History of the DOE Human Genome Program  

Office of Scientific and Technical Information (OSTI)

History of the DOE Human Genome Program History of the DOE Human Genome Program The following history is taken from the U.S. Department of Energy 1991-91 Human Genome Program Report (June 1992). This is an archived item. A brief history of the U.S. Department of Energy (DOE) Human Genome Program will be useful in a discussion of the objectives of the DOE program as well as those of the collaborative U.S. Human Genome Project. The Office of Health and Environmental Research (OHER) of DOE and its predecessor agencies--the Atomic Energy Commission and the Energy Research and Development Administration--have long sponsored research into genetics, both in microbial systems and in mammals, including basic studies on genome structure, replication, damage, and repair and the consequences of genetic

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doi:10.1093/nar/gkr947 The Genome Portal of the Department of Energy Joint Genome Institute  

E-Print Network (OSTI)

The Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility with massive-scale DNA sequencing and analysis capabilities dedicated to advancing genomics for bioenergy and environmental applications. Beyond generating tens of trillions of DNA bases annually, the Institute develops and maintains data management systems and specialized analytical capabilities to manage and interpret complex genomic data sets, and to enable an expanding community of users around the world to analyze these data in different contexts over the web. The JGI Genome Portal

Igor V. Grigoriev; Henrik Nordberg; Igor Shabalov; Andrea Aerts; Mike Cantor; David Goodstein; Alan Kuo; Simon Minovitsky; Roman Nikitin; Robin A. Ohm; Robert Otillar; Alex Poliakov; Igor Ratnere; Robert Riley; Tatyana Smirnova; Daniel Rokhsar; Inna Dubchak

2011-01-01T23:59:59.000Z

87

DOE-EERC jointly sponsored research program  

Science Conference Proceedings (OSTI)

U.S. Department of Energy (DOE) Cooperative Agreement DE-FC21-93MC30098 funded through the Office of Fossil Energy and administered at the Federal Energy Technology Center (FETC) supported the performance of a Jointly Sponsored Research Program (JSRP) at the Energy and Environmental Research Center (EERC) with a minimum 50% nonfederal cost share to assist industry in commercializing and effectively applying efficient, nonpolluting energy technologies that can compete effectively in meeting market demands for clean fuels, chemical feedstocks, and electricity in the 21st century. The objective of the JSRP was to advance the deployment of advanced technologies for improving energy efficiency and environmental performance through jointly sponsored research on topics that would not be adequately addressed by the private sector alone. Examples of such topics include the barriers to hot-gas cleaning impeding the deployment of high-efficiency power systems and the search for practical means for sequestering CO{sub 2} generated by fossil fuel combustion. The selection of particular research projects was guided by a combination of DOE priorities and market needs, as provided by the requirement for joint venture funding approved both by DOE and the private sector sponsor. The research addressed many different energy resource and related environmental problems, with emphasis directed toward the EERC's historic lead mission in low-rank coals (LRCs), which represent approximately half of the U.S. coal resources in the conterminous states, much larger potential resources in Alaska, and a major part of the energy base in the former U.S.S.R., East Central Europe, and the Pacific Rim. The Base and JSRP agreements were tailored to the growing awareness of critical environmental issues, including water supply and quality, air toxics (e.g., mercury), fine respirable particulate matter (PM{sub 2.5}), and the goal of zero net CO{sub 2} emissions.

Hendrikson, J.G.; Sondreal, E.A.

1999-09-01T23:59:59.000Z

88

DOE JGI Secures Long-Term Lease on Production Genomics Facility  

NLE Websites -- All DOE Office Websites (Extended Search)

world's leading DNA sequencing centers in the DOE Joint Genome Institute," said Susan Rainey, Mayor of the City of Walnut Creek, Calif. "In our very own backyard, we can lay claim...

89

Joint EFCOG/DOE Chemical Management 2013 Workshop - March 19...  

NLE Websites -- All DOE Office Websites (Extended Search)

3 Workshop Information Health and Safety POSTPONED. Future events will be announced. Joint EFCOGDOE Chemical Management 2013 Workshop March 19-21, 2013 DOE Forrestal...

90

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

soon be, targets of keen interest in the biofuels researchtarget. Current biofuel production meth- ods, such as corn-to-ethanol, are a valuable BIOFUELS

Gilbert, David

2009-01-01T23:59:59.000Z

91

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

digestion, could produce biogas—primarily methane and carbongasoline per day. When biogas is cleaned of its particulates

Gilbert, David

2009-01-01T23:59:59.000Z

92

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

are potential raw materials for production of biofuels. TheRaw plant material, or dedicated bioenergy crops, can provide the starting point for mak- ing biofuels.

Gilbert, David

2009-01-01T23:59:59.000Z

93

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

B: Glossary Appendix C: CSP Sequencing Plans for 2009Community Sequencing Program (CSP). He is also responsibleand im- plemented the CSP which provides large- scale DNA

Gilbert, David

2009-01-01T23:59:59.000Z

94

DOE Joint Genome Institute 2008 Progress Report  

E-Print Network (OSTI)

Thermoacidophilic proteins for biofuel production. Trends inthat could help improve biofuel production. Diatom Genomedoc/200809/termites) Biofuel’s Holy Grail: Shipworms? (

Gilbert, David

2009-01-01T23:59:59.000Z

95

U.S Department of Energy Joint Genome Institute Progress Report  

NLE Websites -- All DOE Office Websites (Extended Search)

S Department of Energy S Department of Energy Joint Genome Institute Progress Report 2009 Representatives of the four DOE JGI genome programs (plant, fungal, metagenome, and microbe) grace the cover of this annual report. Three of the organisms were among the 81 projects selected in 2009 for the 2010 Community Sequencing Program portfolio. Photo credits, clockwise from bottom left: Brachypodium distachyon by Roy Kaltschmidt, LBNL; Amanita thiersii fungus by Joe McFarland; Cow rumen metagenome by Gemma Henderson, AgResearch; Soybeans by Roy Kaltschmidt, LBNL; Zymomonas mobilis Z4 by Katherine Pappas, University of Athens U.S Department of Energy Joint Genome Institute Progress Report 2009 DOE JGI Mission . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 Director's

96

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot Rooted in Wonder: Joint Genome Institute Study Reveals Amazing World Underfoot August 13, 2012 - 2:33pm Addthis By developing a better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for them in times of drought. By developing a better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for them in times of drought. Charles Rousseaux Charles Rousseaux Senior Writer, Office of Science What Is A Weed It's also known as a mouse-ear cress. The scientific name is Arababidopsis thaliana.

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JGI - Sequencing for the DOE Genomics: GTL Program  

NLE Websites -- All DOE Office Websites (Extended Search)

Educational Resources MyJGI: Information for Collaborators Sequencing for the DOE Genomics: GTL Program For status information, see the Genome Projects section. For more...

98

USDA-DOE Make Available $4 Million for Biomass Genomics Research |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

USDA-DOE Make Available $4 Million for Biomass Genomics Research USDA-DOE Make Available $4 Million for Biomass Genomics Research USDA-DOE Make Available $4 Million for Biomass Genomics Research October 12, 2006 - 9:08am Addthis ST. LOUIS, MO -- The U.S. Departments of Energy and Agriculture (DOE and USDA) today announced $4 million for bio-based fuels research that will accelerate the development of alternative fuels. The departments issued a solicitation for research proposals for new plant feedstock genomics research projects. Dr. Raymond L. Orbach, DOE Under Secretary for Science, made the announcement at Advancing Renewable Energy: An American Rural Renaissance, a conference jointly hosted by the two agencies in St. Louis. "We are seeking to accelerate research breakthroughs that contribute towards making biofuels a cost-effective alternative to fossil fuels, with

99

Low Dose Radiation Research Program: DOE / NASA Joint Funded Projects  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE/NASA Joint Funded Projects DOE/NASA Joint Funded Projects NASA Source Photo Space explorers are subject to exposure to low dose ionizing radiation. Research that helps determine health risks from this exposure is funded by NASA and DOE. Source: NASA DOE's Low Dose Program and the National Aeronautics and Space Administration (NASA) jointly fund new research to develop a better scientific basis for understanding risks to humans from exposures to low doses or low fluences of ionizing radiation. Research must focus on elucidating molecular mechanisms and pathways involved in normal radiobiological responses to low dose exposure, and must have the potential to ultimately increase understanding of health outcomes from radiation exposures that are at or near current workplace exposure

100

Introduction to Metagenomics at DOE JGI: Program Overview and Program Informatics (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)  

Science Conference Proceedings (OSTI)

Susannah Tringe of the DOE Joint Genome Institute talks about the Program Overview and Program Informatics at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011

Tringe, Susannah [DOE JGI

2011-10-12T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


101

DOE Joint Genome Institute: Genome Signatures Enable Tracking...  

NLE Websites -- All DOE Office Websites (Extended Search)

into how photosynthetic organisms can be engineered to do what we want, such as make biofuels or other products, rather than what they typically do, which is grow and make...

102

Plethodontid salamander mitochondrial genomics: A parsimony evaluation of character conflict and implications for historical biogeography  

E-Print Network (OSTI)

Mitochondrial DNA; Genomics; Biogeography; Appalachia. 1.salamander mitochondrial genomics: A parsimony evaluation of1,2 Department of Evolutionary Genomics, DOE Joint Genome

Macey, J. Robert

2005-01-01T23:59:59.000Z

103

USDA and DOE to Coordinate Research of Plant and Microbial Genomics |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

to Coordinate Research of Plant and Microbial Genomics to Coordinate Research of Plant and Microbial Genomics USDA and DOE to Coordinate Research of Plant and Microbial Genomics January 17, 2006 - 10:39am Addthis -- Soybean DNA to be Decoded -- WASHINGTON - The U.S. Departments of Agriculture and Energy announced Monday they will share resources and coordinate the study of plant and microbial genomics, and the Department of Energy will tackle the sequencing of the soybean genome as the first project resulting from the agreement. "This agreement demonstrates a joint commitment to support high-quality genomics research and integrated projects to meet the nation's agriculture and energy challenges," said Dr. Colien Hefferan, administrator of USDA's Cooperative State Research, Extension and Economics Service (CSREES), who

104

Fuel Cell Technologies Office: DOE-EERE/NIST Joint Workshop on...  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE-EERENIST Joint Workshop on Combinatorial Materials Science for Applications in Energy to someone by E-mail Share Fuel Cell Technologies Office: DOE-EERENIST Joint Workshop on...

105

Initial Joint Review of Wildland Fire Safety at DOE Sites  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

December December 2000 A Report to the Secretary of Energy Initial Joint Review of Wildland Fire Safety at DOE Sites OVERSIGHT Table of Contents Executive Summary................................................................................... 1 1.0 Introduction ......................................................................................... 5 2.0 Summary of Review Results .............................................................. 8 2.1 Wildland Fire Management Policy ............................................. 8 2.2 Fire/Emergency Hazards Assessments ....................................... 9 2.3 Wildland Fire Prevention and Response .................................. 11 2.4 Offsite Interfaces and Agreements ........................................... 13 2.5 Feedback and Continuous Improvement

106

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

S, et al. Comparative genome sequencing of DrosophilaInternational Human Genome Sequencing Consortium. FinishingWhile NIH-funded genome sequencing activities largely

Gilbert, David

2005-01-01T23:59:59.000Z

107

DOE JGI Microbial Genomics & Metagenomics Workshops  

NLE Websites -- All DOE Office Websites (Extended Search)

Organizers Workshop Organizers Nikos Kyrpides Head of the Prokaryotic Super Program, DOE JGI Kostas Mavrommatis Scientific Programs, DOE JGI Marsha Fenner Sr. Admin, Scientific...

108

Initial Joint Review, Wildland Fire Safety at DOE Sites - December 2000 |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Initial Joint Review, Wildland Fire Safety at DOE Sites - December Initial Joint Review, Wildland Fire Safety at DOE Sites - December 2000 Initial Joint Review, Wildland Fire Safety at DOE Sites - December 2000 December 2000 Initial Joint Review of Wildland Fire Safety at DOE Sites The initial joint review was conducted between October 15 and December 15, 2000, by the Offices of Independent Oversight and Performance Assurance (OA), Security and Emergency Operations (SO), and Environment, Safety and Health (EH). The purpose of the initial joint review was to assess the abilities of DOE sites to prevent and respond to wildland fires and provide recommendations for pertinent site-specific and DOE-wide improvements. Initial Joint Review, Wildland Fire Safety at DOE Sites - December 2000 More Documents & Publications Audit Report: IG-0760

109

DOE JGI Releases Soybean Genome Assembly  

NLE Websites -- All DOE Office Websites (Extended Search)

SoyMap team, comprising principal investigator Scott Jackson, Gary Stacey and Henry Nguyen, Jeff Doyle of Cornell University, William Beavis of the National Center for Genome...

110

JGI - Distinguished Postdoctoral Fellow in Genomics  

NLE Websites -- All DOE Office Websites (Extended Search)

Distinguished Postdoctoral Fellow in Genomics The Department of Energy Joint Genome Institute (DOE JGI) in Walnut Creek, CA is soliciting Postdoctoral Fellows working in the...

111

Environmental genomics reveals a single species ecosystem deep within the Earth  

E-Print Network (OSTI)

Environmental genomics reveals a single species ecosystemMaterial for Environmental genomics reveals a single speciesTechnology Program, DOE Joint Genomics Institute, Berkeley,

Chivian, Dylan

2008-01-01T23:59:59.000Z

112

DOE Announces Funding for U.S.-India Joint Clean Energy Research...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Funding for U.S.-India Joint Clean Energy Research and Development Center DOE Announces Funding for U.S.-India Joint Clean Energy Research and Development Center May 16, 2011 -...

113

JGI - FY2003 Sequencing for the DOE Microbial Genome Program  

NLE Websites -- All DOE Office Websites (Extended Search)

3 Sequencing for the 3 Sequencing for the DOE Microbial Genome Program For status information, see the Genome Projects section. For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. Eukaryotes Organism Genome Size Emiliania huxleyi 220 Mb Ostreococcus lucimarinus 9.3 Mb Monosiga brevicollis Bacteria Organism Genome Size Anabaena variabilis ATCC 29413 7 Mb Burkholderia sp. 383 8.80 Mb Burkholderia vietnamiensis G4 8.40 Mb Chlorobium aggregatum Chlorobium chlorochromatii CaD3 2.6 Mb Chlorochromatium aggregatum Lake Dagow Crocosphaera watsonii WH 8501 6.40 Mb Kineococcus radiotolerans SRS30216 4.90 Mb Methylibium petroleiphilum PM1 4.60 Mb

114

JGI - FY2005 Sequencing for the DOE Microbial Genome Program  

NLE Websites -- All DOE Office Websites (Extended Search)

5 Sequencing for the 5 Sequencing for the DOE Microbial Genome Program For status information, see the Genome Projects section. For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. Strains of Shewanella Organism Est. Genome Size Shewanella baltica OS195 5 Mb Shewanella sp. ANA-3 5 Mb Shewanella sp. MR-4 5 Mb Shewanella sp. MR-7 5 Mb Shewanella sp. W3-18-1 5 Mb Shewanella baltica OS223 5 Mb Strains of Chloroflexi Organism Est. Genome Size Chloroflexus aggregans DSM 9485 5 Mb Chloroflexus sp. Y-396-1 5 Mb Chlorothrix halophila (Candidatus) 5 Mb Herpetosiphon aurantiacus DSM 785 5 Mb Roseiflexus castenholzii HLO8 5 Mb Roseiflexus sp. strain RS-1 5 Mb

115

JGI - FY2002 Sequencing for the DOE Microbial Genome Program  

NLE Websites -- All DOE Office Websites (Extended Search)

2 Sequencing for the 2 Sequencing for the DOE Microbial Genome Program For status information, see the Genome Projects section. For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. Eukaryotes Organism Genome Size Thalassiosira pseudonana CCMP 1335 (diatom) 32 Mb Lactic Acid Bacteria Organism Genome Size Bifidobacterium longum DJO10A 2.4 Mb Brevibacterium linens BL2 4.5 Mb Lactobacillus brevis ATCC 367 1.8 Mb Lactobacillus casei ATCC 334 2.8 Mb Lactobacillus delbrueckii ATCC BAA-365 1.6 Mb Lactobacillus gasseri ATCC 33323 1.9 Mb Lactococcus lactis subsp. cremoris SK11 2.6 Mb Leuconostoc mesenteroides ATCC 8293 2 Mb Oenococcus oeni PSU-1 1.8 Mb

116

JGI - FY2004 Sequencing for the DOE Microbial Genome Program  

NLE Websites -- All DOE Office Websites (Extended Search)

4 Sequencing for the 4 Sequencing for the DOE Microbial Genome Program For status information, see the Genome Projects section. For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. Chlorobia (avg:~2.4Mb) Organism Genome Size Chlorobium ferrooxidans DSM 13031 2.40 Mb Chlorobium limicola DSMZ 245 2.4 Mb Chlorobium phaeobacteroides BS1 2.4 Mb Chlorobium phaeobacteroides DSM 266 2.3 Mb Pelodictyon luteolum DSMZ 273 2.3 Mb Pelodictyon phaeoclathratiforme BU-1 (DSM 5477) 2.4 Mb Prosthecochloris aestuarii DSM 271 2.4 Mb Prosthecochloris vibrioformis DSM 265 2.4 Mb Chlorobaculum parvum n/a Chloroherpeton thalassium n/a Model Syntrophic Consortium

117

JGI - FY2001 Sequencing for the DOE Microbial Genome Program  

NLE Websites -- All DOE Office Websites (Extended Search)

1 Sequencing for the 1 Sequencing for the DOE Microbial Genome Program For status information, see the Genome Projects section. For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. Organism Genome Size Burkholderia xenovorans LB400 8 Mb Chloroflexus aurantiacus J-10-fl 3 Mb Cupriavidus metallidurans CH34 6.8 Mb Cytophaga hutchinsonii ATCC 33406 4.4 Mb Desulfitobacterium halfniense DCB-2 4.7 Mb Enterococcus faecium DO 2.8 Mb Ferroplasma acidarmanus fer1 1.8 Mb Magnetococcus sp. MC-1 4.7 Mb Methanosarcina barkerii fusaro 4.8 Mb Nitrosomonas europaea ATCC 19718 2.8 Mb Nostoc punctiforme PCC 73102 9.2 Mb Novosphingobium aromaticivorans DSM 12444 4.2 Mb

118

JGI - FY2007 Sequencing for the DOE Microbial Genome Program  

NLE Websites -- All DOE Office Websites (Extended Search)

7 Sequencing for the 7 Sequencing for the DOE Microbial Genome Program For status information, see the Genome Projects section. For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. Organism(s) Est. Genome Size Acremonium alcalophilum ATCC90507 40 MB Azolla Cyanobacterium, Arthrospira maxima, and Cyanobacterium JSC-1 NA bacterioplankton pool cDNA day, night, night + DOC1, night + DOC2 NA Clostridum carboxidivorans, Clostridium sp. strains, Clostridium straminisolvens, Clostridum thermocellum LQR1 DSM2360 , Clostridium thermocellum JW20 DSM 4150 Thermoanaerobacter italicus Ab9 DSM9252, T. ethanolicus X513, T. ethanoloicus X561, T. mathrani, Thermoanaerobacterium thermosaccharaolyticum, Thermoanaerobacterium xylanolyticum LX11 DSM7097 3.5-4.0 MB

119

USDA-DOE Make Available $4 Million for Biomass Genomics Research | U.S. DOE  

NLE Websites -- All DOE Office Websites (Extended Search)

USDA-DOE Make USDA-DOE Make Available $4 Million for Biomass Genomics Research News Featured Articles Science Headlines 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 Presentations & Testimony News Archives Contact Information Office of Science U.S. Department of Energy 1000 Independence Ave., SW Washington, DC 20585 P: (202) 586-5430 10.12.06 USDA-DOE Make Available $4 Million for Biomass Genomics Research Print Text Size: A A A Subscribe FeedbackShare Page ST. LOUIS, MO - The U.S. Departments of Energy and Agriculture (DOE and USDA) today announced $4 million for bio-based fuels research that will accelerate the development of alternative fuels. The departments issued a solicitation for research proposals for new plant feedstock genomics research projects. Dr. Raymond L. Orbach, DOE Under Secretary for Science,

120

DOE Human Genome Program contractor-grantee workshop  

Science Conference Proceedings (OSTI)

This volume contains the proceedings for the DOE Human Genome Program`s Contractor-Grantee Workshop V held in Sante Fe, New Mexico January 28, February 1, 1996. Presentations were divided into sessions entitled Sequencing; Mapping; Informatics; Ethical, Legal, and Social Issues; and Infrastructure. Reports of individual projects described herein are separately indexed and abstracted for the database.

NONE

1996-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


121

Communicating Genomics:GTL  

NLE Websites -- All DOE Office Websites (Extended Search)

Annual Annual DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 29-April 1, 2006 Embassy Suites Hotel and DOE Joint Genome Institute Walnut Creek, California iii Contents Agenda .................................................................................................................. iv Speaker Presentations . .........................................................................................1 Abtracts in order of presentation according to agenda (p. iv) Poster Presentations ..............................................................................................9 Posters alphabetical by first author. *Presenting author. Attendees...............................................................................................................75

122

DOE Joint Genome Institute: Formidable Fungal Force Counters...  

NLE Websites -- All DOE Office Websites (Extended Search)

applications, fungi provide a source of enzymes to catalyze such processes as generating biofuels from plant biomass. One large fungal group with such enzymes are the rust plant...

123

DOE Joint Genome Institute: DNA Sequencing Reveals Complex Microbial...  

NLE Websites -- All DOE Office Websites (Extended Search)

operates at higher than normal temperatures to help degrade terephthalate (TA) wastewater that results from the production of a raw chemical used to make many plastic...

124

DOE Joint Genome Institute: Tracking the Remnants of the Carbon...  

NLE Websites -- All DOE Office Websites (Extended Search)

Tracking the Remnants of the Carbon Cycle: How an Ancestral Fungus May Have Influenced Coal Formation For want of a nail, the nursery rhyme goes, a kingdom was lost. A similar,...

125

DOE Joint Genome Institute: Rot's Unique Wood Degrading Machinery...  

NLE Websites -- All DOE Office Websites (Extended Search)

February 5, 2009 Rot's Unique Wood Degrading Machinery to be Harnessed for Better Biofuels Production WALNUT CREEK, CA-An international team led by scientists from the U.S....

126

The DOE Joint Genome Institute Expands Capabilities via New Partnershi...  

NLE Websites -- All DOE Office Websites (Extended Search)

Expands Capabilities via New Partnerships With the publication last year of its strategic plan, "Forging the Future - A Ten-Year Strategic Vision" the U.S. Department of...

127

DOE Joint Genome Institute: Tiny Algae Shed Light on Photosynthesis...  

NLE Websites -- All DOE Office Websites (Extended Search)

children learn is the recipe for photosynthesis, combining carbon dioxide, water and solar energy to produce organic compounds. Many of the world's most important...

128

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

as a non-traditional user facility, the JGI is empoweringserve as a traditional user facility driven by DOE missionexperience running user facilities, it has become clear that

Gilbert, David

2005-01-01T23:59:59.000Z

129

DOE, USDA, and NSF Launch Joint Climate Change Prediction Research Program  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

DOE, USDA, and NSF Launch Joint Climate Change Prediction Research DOE, USDA, and NSF Launch Joint Climate Change Prediction Research Program DOE, USDA, and NSF Launch Joint Climate Change Prediction Research Program March 22, 2010 - 12:00am Addthis Washington, DC - The U.S. Departments of Energy and Agriculture and the National Science Foundation (NSF) announced the launch of a joint research program to produce high-resolution models for predicting climate change and its resulting impacts. Called Decadal and Regional Climate Prediction Using Earth System Models (EaSM), the program is designed to generate models that -- significantly more powerful than existing models -- can help decision-makers develop adaptation strategies addressing climate change. These models will be developed through a joint, interagency solicitation

130

DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint Environmental  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint Environmental Research Projects to Advance Ocean Renewable Energy DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint Environmental Research Projects to Advance Ocean Renewable Energy October 26, 2010 - 12:00am Addthis WASHINGTON, DC - The Department of Energy (DOE), Bureau of Ocean Energy Management, Regulation and Enforcement (BOEMRE), and the Department of Commerce's National Oceanic and Atmospheric Administration (NOAA) today announced eight joint research awards totaling nearly $5 million to support the responsible siting and permitting of offshore wind energy facilities and ocean energy generated from waves, tides, currents and thermal gradients. This critical research will address key information gaps

131

DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint Environmental  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint Environmental Research Projects to Advance Ocean Renewable Energy DOE, BOEMRE and NOAA Announce Nearly $5 Million for Joint Environmental Research Projects to Advance Ocean Renewable Energy October 26, 2010 - 12:00am Addthis WASHINGTON, DC - The Department of Energy (DOE), Bureau of Ocean Energy Management, Regulation and Enforcement (BOEMRE), and the Department of Commerce's National Oceanic and Atmospheric Administration (NOAA) today announced eight joint research awards totaling nearly $5 million to support the responsible siting and permitting of offshore wind energy facilities and ocean energy generated from waves, tides, currents and thermal gradients. This critical research will address key information gaps

132

Joint DOE/NSF Review of U.S. LHC Software and Computing  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint DOENSF Status Meeting of U.S. LHC Software and Computing July 8, 2004 at DOE, Germantown, MD Agenda | Documentation | Attendees | Report Purpose: Status review of the U.S....

133

14th Annual Joint DOE/EFCOG Chemical Safety and Worker Safety and Health  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

4th Annual Joint DOE/EFCOG Chemical Safety and Worker Safety and 4th Annual Joint DOE/EFCOG Chemical Safety and Worker Safety and Health Program (10 CFR 851) Workshop 14th Annual Joint DOE/EFCOG Chemical Safety and Worker Safety and Health Program (10 CFR 851) Workshop Workshop Dates: March 13-15, 2012 The workshop served to promote continuous improvement in the implementation of 851 through the shared experiences and enhancements of a variety of DOE stakeholder communities. Panel members from Savannah River Nuclear Solutions, the United Steel Workers, the DOE Offices of Environmental Management and the National Nuclear Security Administration, and the HSS Offices of Worker Safety and Health Policy and Enforcement and Oversight, provided 851 implementation perspectives and an opportunity for interactive discussion and exchange with attendees.

134

Initial Joint Review of Wildland Fire Safety at DOE Sites  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

strengthen the Department's capabilities in preventing and responding to wildland fires. DOE orders and policy guidance do not clearly establish or convey expectations for...

135

Does hydraulic-fracturing theory work in jointed rock masses  

DOE Green Energy (OSTI)

The hypocenter locations of micro-earthquakes (acoustic emissions) generated during fracturing typically are distributed three-dimensionally suggesting that fracturing stimulates a volumetric region, rather than the planar fracture theoretically expected. The hypocenter maps generated at six operating, or potential, HDR reservoirs in the US, Europe and Japan are examined in detail and the fracture dimensions are correlated with fracture injection volumes and formation permeability. Depsite the volumetric appearance of the maps we infer that the induced fractures are mainly planar and may propagate aseismically. The induced seismicity stems from nearby joints, which are not opened significantly by fracturing, but are caused to shear-slip because of local pore pressure.

Murphy, H.D.; Keppler, H.; Dash, Z.V.

1983-01-01T23:59:59.000Z

136

DOE Announces Funding for U.S.-India Joint Clean Energy Research and  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Funding for U.S.-India Joint Clean Energy Research Funding for U.S.-India Joint Clean Energy Research and Development Center DOE Announces Funding for U.S.-India Joint Clean Energy Research and Development Center May 16, 2011 - 12:00am Addthis Washington, D.C. - As part of the Partnership to Advance Clean Energy announced by President Obama and Prime Minister Singh of India last November, the Department of Energy has committed $25 million over the next five years to support the U.S.-India Joint Clean Energy Research and Development Center (JCERDC). This first-of-a-kind effort is a key component of the U.S. and India's commitment to improve energy access and promote low-carbon growth by facilitating joint research and development of clean energy technologies. Teams of scientists and engineers from the U.S. and India will initially

137

Joint DOE/industry photovoltaic system reliability program  

DOE Green Energy (OSTI)

To achieve the lowest life-cycle cost (LCC), photovoltaic (PV) systems must have the optimum mix of low first cost, low operation and maintenance (O&M) cost, and high availability. Additionally, the long-term health of the photovoltaic (PV) industry requires that PV systems work as expected. Although PV modules now enjoy high reliability due to a significant multi-year effort by both the U.S. Department of Energy (DOE) and industry, the same is not always true of PV systems. Even for systems that do operate reliably, customers, suppliers, and manufacturers can benefit from knowing what O&M expenses to expect. This knowledge will reduce technology risk to the customer and improve likelihood of commitment to PV projects. System integrators and utilities may benefit from O&M cost information to improve system designs, to properly price service agreements and warranties, and to optimize maintenance strategies. The DOE and component manufacturers may benefit from identifying cost drivers to optimally focus research and quality assurance resources to improve product reliability. This paper discusses the first of five tasks identified for this project, quantifying system reliability and life cycle cost by collecting, analyzing and reporting data on PV system reliability and cost. Industry participants collect the necessary O&M data on systems they are monitoring. Sandia provides support in the form of assistance identifying data that needs to be collected, helping develop forms or databases to collect the data, and analyzing the data.

Maish, A.B.; Atcitty, C. [Sandia National Labs., NM (United States); Hester, S. [Utility Photo Voltaic Group, Washington, DC (United States)] [and others

1997-06-01T23:59:59.000Z

138

DOE and FERC Joint Public Statement on Back Stop Siting | Department of  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

FERC Joint Public Statement on Back Stop Siting FERC Joint Public Statement on Back Stop Siting DOE and FERC Joint Public Statement on Back Stop Siting October 11, 2011 - 1:32pm Addthis Washington, D.C. - U.S. Energy Secretary Steven Chu announced today his decision that the Department of Energy will work more closely with the Federal Energy Regulatory Commission (FERC) in reviewing proposed electric transmission projects under section 216 of the Federal Power Act (FPA), as an alternative to delegating additional authority to FERC. Chu said, "This nation promptly needs to build the electric grid of the 21st century to compete in the global economy. Enhanced cooperation between DOE and FERC is the best way to help achieve this goal. I look forward to working with Chairman Wellinghoff as we take steps to ease

139

DOE human genome program contractor-grantee workshop VI  

SciTech Connect

Research is presented from the workshop on the Human Genome Project. Topics include sequencing, genetic mapping, informatics, ethical and legal issues, and infrastructure.

NONE

1997-10-01T23:59:59.000Z

140

DOE-WRI Jointly Sponsored Research Program on Energy-Related Topics  

NLE Websites -- All DOE Office Websites (Extended Search)

Power Systems Power Systems Advanced Research ContaCts Kamalendu Das Project Manager Gasification and Combustion Projects Division National Energy Technology Laboratory 3610 Collins Ferry Road P.O. Box 880 Morgantown, WV 26507 304-285-4065 kamal.das@netl.doe.gov Robert R. Romanosky Technology Manager Advanced Research National Energy Technology Laboratory 3610 Collins Ferry Road P.O. Box 880 Morgantown, WV 26507 304-285-4721 robert.romanosky@netl.doe.gov Vijay K. sethi Western Research Institute 365 North 9th Street P.O. Box 3395 Laramie, WY 82072-3380 307-721-2376 vsethi@uwyo.edu http://wri.uwyo.edu/ DOE-WRI JOIntly SpOnSORED RESEaRch pROgRam On EnERgy-RElatED tOpIcS Description For over two decades, the University of Wyoming Research Corporation - doing business as the Western Research Institute (WRI) - has been supporting the

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


141

JOINT EPA/DOE STATEMENT: Radiation Monitors Confirm That No Radiation  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

EPA/DOE STATEMENT: Radiation Monitors Confirm That No EPA/DOE STATEMENT: Radiation Monitors Confirm That No Radiation Levels of Concern Have Reached the United States JOINT EPA/DOE STATEMENT: Radiation Monitors Confirm That No Radiation Levels of Concern Have Reached the United States March 18, 2011 - 12:00am Addthis WASHINGTON - The United States Government has an extensive network of radiation monitors around the country and no radiation levels of concern have been detected. The U.S. Environmental Protection Agency RadNet system is designed to protect the public by notifying scientists, in near real time, of elevated levels of radiation so they can determine whether protective action is required. The EPA's system has not detected any radiation levels of concern. In addition to EPA's RadNet system, the U.S. Department of Energy has

142

DOE-EERC Fossil Energy Base Program and Jointly Sponsored Research Program  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE-EERC FOssil EnERgy BasE PROgRam DOE-EERC FOssil EnERgy BasE PROgRam anD JOintly sPOnsORED REsEaRCh PROgRam Description Since 1998, the U.S. Department of Energy (DOE), through the Advanced Research Program of the National Energy Technology Laboratory (NETL), has been providing financial support to the University of North Dakota's Energy and Environmental Research Center (EERC). Within the framework of two cooperative agreements, the EERC performs research, development, and demonstration (RD&D) projects aimed at advancing the deployment of technologies that will improve energy efficiency and environmental performance of fossil energy systems in areas that would otherwise not be adequately addressed by the private sector. Under a Base agreement, the EERC focuses on new concepts for highly efficient,

143

DOE Systems Biology Knowledgebase (KBASE) (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)  

Science Conference Proceedings (OSTI)

Adam Arkin from Berkeley Lab on the DOE Systems Biology Knowledgebase (KBASE) at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

Arkin, Adam [LBNL

2012-03-21T23:59:59.000Z

144

DOE JGI CSP 2012 PI Workshop  

NLE Websites -- All DOE Office Websites (Extended Search)

CSP 2012 PI Workshop DOE Joint Genome Institute Walnut Creek, California The DOE-JGI is organizing a two-day workshop for Principal Investigators on successful CSP 2012 proposals...

145

Genome To Life Report | U.S. DOE Office of Science (SC)  

Office of Science (SC) Website

Genome To Life Report Genome To Life Report Biological and Environmental Research Advisory Committee (BERAC) BERAC Home Meetings Members Charges/Reports Current BERAC Charges Archive of BERAC Reports Charter .pdf file (40KB) BER Committees of Visitors BER Home Charges/Reports Genome To Life Report Print Text Size: A A A RSS Feeds FeedbackShare Page DOE Genomes to Life Program Information External link BRINGING THE GENOME TO LIFE - Energy Related Biology in the New Genomic World - A New Research Program for the Department of Energy's Office of Biological and Environmental Research recommended by the Biological and Environmental Research Advisory Committee June 2000 In response to the charge letter of Dr. Martha Krebs, November 24, 1999 OVERVIEW Mission: To develop the capability of understanding and predicting the behavior of

146

Improving biofuel feedstocks by modifying xylan biosynthesis (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Jane Lau of the Joint BioEnergy Institute on "Improving biofuel feedstocks by modifying xylan biosynthesis" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

Lau, Jane [JBEI

2013-03-01T23:59:59.000Z

147

First Annual U.S. Department of Energy Office of Science Joint Genome Institute User Meeting  

E-Print Network (OSTI)

relatives for genome sequencing (A. lyrata and CapsellaThis is our rationale for genome sequencing of a free-livingof de Novo Genome Sequencing with 454 Technology Stephen

Various

2006-01-01T23:59:59.000Z

148

JOINT EPA/DOE STATEMENT: Radiation Monitors Confirm That No Radiation...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

JOINT EPADOE STATEMENT: Radiation Monitors Confirm That No Radiation Levels of Concern Have Reached the United States JOINT EPADOE STATEMENT: Radiation Monitors Confirm That No...

149

Researchers Funded by the DOE "Genomes to Life" Program Achieve Important  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Researchers Funded by the DOE "Genomes to Life" Program Achieve Researchers Funded by the DOE "Genomes to Life" Program Achieve Important Advance in Developing Biological Strategies to Produce Hydrogen, Sequester Carbon Dioxide and Clean up the Environment Researchers Funded by the DOE "Genomes to Life" Program Achieve Important Advance in Developing Biological Strategies to Produce Hydrogen, Sequester Carbon Dioxide and Clean up the Environment December 13, 2003 - 9:40am Addthis WASHINGTON, DC - Secretary of Energy Spencer Abraham announced today that Department of Energy-funded researchers have achieved a significant scientific advance in their efforts to piece together DNA strands, thereby helping develop new, biological methods to capture carbon dioxide from the atmosphere, produce hydrogen and clean the environment.

150

Information on a Major New Initiative: Mapping and Sequencing the Human Genome (1986 DOE Memorandum)  

DOE R&D Accomplishments (OSTI)

In the history of the Human Genome Program, Dr. Charles DeLisi and Dr. Alvin Trivelpiece of the Department of Energy (DOE) were instrumental in moving the seeds of the program forward. This May 1986 memo from DeLisi to Trivelpiece, Director of DOE's Office of Energy Research, documents this fact. Following the March 1986 Santa Fe workshop on the subject of mapping and sequencing the human genome, DeLisi's memo outlines workshop conclusions, explains the relevance of this project to DOE and the importance of the Department's laboratories and capabilities, notes the critical experience of DOE in managing projects of this scale and potential magnitude, and recognizes the fact that the project will impact biomedical science in ways which could not be fully anticipated at the time. Subsequently, program guidance was further sought from the DOE Health Effects Research Advisory Committee (HERAC) and the April 1987 HERAC report recommended that DOE and the nation commit to a large, multidisciplinary, scientific and technological undertaking to map and sequence the human genome.

DeLisi, Charles (Associate Director, Health and Environmental Research, DOE Office of Energy Research)

1986-05-06T23:59:59.000Z

151

Joint Center for Artificial Photosynthesis (JCAP): DOE's Solar Fuels Energy Innovation Hub (2011 EFRC Summit)  

DOE Green Energy (OSTI)

The Joint Center for Artificial Photosynthesis (JCAP) is a DOE Energy Innovation Hub focused on fuels from sunlight. JCAP's Director, Nate Lewis, spoke at the 2011 EFRC Summit about what JCAP is and how it is partnering with the EFRC community to accelerate the progress towards new solar fuels. The 2011 EFRC Summit and Forum brought together the EFRC community and science and policy leaders from universities, national laboratories, industry and government to discuss "Science for our Nation's Energy Future." In August 2009, the Office of Science established 46 Energy Frontier Research Centers. The EFRCs are collaborative research efforts intended to accelerate high-risk, high-reward fundamental research, the scientific basis for transformative energy technologies of the future. These Centers involve universities, national laboratories, nonprofit organizations, and for-profit firms, singly or in partnerships, selected by scientific peer review. They are funded at $2 to $5 million per year for a total planned DOE commitment of $777 million over the initial five-year award period, pending Congressional appropriations. These integrated, multi-investigator Centers are conducting fundamental research focusing on one or more of several “grand challenges” and use-inspired “basic research needs” recently identified in major strategic planning efforts by the scientific community. The purpose of the EFRCs is to integrate the talents and expertise of leading scientists in a setting designed to accelerate research that transforms the future of energy and the environment.

Lewis, Nate (Director, Joint Center for Artificial Photosynthesis and Professor at Caltech)

2011-05-25T23:59:59.000Z

152

Joint DOE/NSF Review of U.S. LHC Software and Computing  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint DOENSF Review of U.S. LHC Software and Computing January 13-16 at Fermilab Charge to the Review Committee, Questions to US CMS Report on the Joint DOENSF Review of U.S. LHC...

153

14th Annual Joint DOE/EFCOG Chemical Safety and Worker Safety...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

4th Annual Joint DOEEFCOG Chemical Safety and Worker Safety and Health Program (10 CFR 851) Workshop 14th Annual Joint DOEEFCOG Chemical Safety and Worker Safety and Health...

154

JGI Fungal Genomics Program  

SciTech Connect

Genomes of energy and environment fungi are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 50 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such 'parts' suggested by comparative genomics and functional analysis in these areas are presented here

Grigoriev, Igor V.

2011-03-14T23:59:59.000Z

155

Energy Department Awards $92 Million for Genomics Research | U.S. DOE  

NLE Websites -- All DOE Office Websites (Extended Search)

Energy Energy Department Awards $92 Million for Genomics Research News Featured Articles Science Headlines 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 Presentations & Testimony News Archives Contact Information Office of Science U.S. Department of Energy 1000 Independence Ave., SW Washington, DC 20585 P: (202) 586-5430 10.03.05 Energy Department Awards $92 Million for Genomics Research Print Text Size: A A A Subscribe FeedbackShare Page WASHINGTON, DC - The Department of Energy (DOE) today issued a comprehensive plan for a new generation of biology research that builds on genome project investments to help solve national energy and environmental challenges. Microbial enzymes could, for example, be used to improve the manufacture of ethanol from cellulose by replacing the inefficient and

156

FORGING THE FUTURE OF THE DOE JGI  

NLE Websites -- All DOE Office Websites (Extended Search)

FORGING FORGING THE FUTURE OF THE DOE JGI A 10-Year Strategic Vision U.S. Department of Energy Joint Genome Institute (JGI) September, 2012 OUR VISION The user facility pioneering functional genomics to solve the most relevant bioenergy and environmental problems A 10-Year Strategic Vision FORGING THE FUTURE OF THE DOE JGI U.S. Department of Energy Joint Genome Institute (JGI) September 2012 This document contains three sections: I. Introduction II. Background-Science Drivers III. Capabilities The Introduction provides a high level overview of the DOE Joint Genome Institute (DOE JGI) and how it plans to evolve as a genomic user facility to meet the scientific needs of energy and environmental research over the next decade. The Background-Science Driver section provides an assessment of the major scientific

157

Joint DOE/EPA Interim Policy Statement on Leasing Under the "Hall Amendment"  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Environmental Protection Agency Environmental Protection Agency June 23, 1998 Washington, D.C. JUN 30 1998 MEMORANDUM SUBJECT: Joint DOE/EPA Interim Policy Statement on Leasing Under the "Hall Amendment" FROM: Timothy Fields, Jr. Assistant Administrator, Office of Solid Waste and Energy Response (Acting) United States Environmental Protection Agency James M. Owendoff Assistant Secretary Environmental Management (Acting) United States Department of Energy Robert W. DeGrasse, Jr. Director, Office of Worker and Community United States Department of Energy G. Thomas Todd Director, Office of Field Management United States Department _______________________________________________________________ Attached is a joint statement between the United States Environmental Protection Agency. (U.S., EPA) and the United States Department of Energy (DOE) providing interim policy on processing

158

JGI - DOE Mission Relevance  

NLE Websites -- All DOE Office Websites (Extended Search)

User Programs User Programs Project Management Office Community Science Program Emerging Technologies Opportunity Program Technology Development Pilot Program Genomic Encyc. of Bacteria and Archaea MyJGI: Information for Collaborators DOE Mission Relevance CSP | Overview | How to Propose a Project | Review Process | DOE Relevance Proposal Schedule | FAQ The Department of Energy Joint Genome Institute (DOE JGI) is managed by the Department of Energy's Office of Biological and Environmental Research (OBER) to produce high-throughput DNA sequencing and analysis in support of its missions in alternative energy, global carbon cycling, and biogeochemistry. These areas mirror DOE and national priorities to develop abundant sources of clean energy, to control greenhouse gas accumulation in

159

Communicating Genomics:GTL  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Joint Genome Institute User Meeting Sponsored By U.S. Department of Energy Office of Science March 24-26, 2010 Walnut Creek Marriott Walnut Creek, California iii Contents Speaker Presentations ......................................................................................... 1 Poster Presentations........................................................................................... 11 Attendees............................................................................................................. 67 Author Index ...................................................................................................... 75 iv Posters alphabetical by first author. *Presenting author 1 Speaker Presentations Abstracts alphabetical by speaker

160

Joint DOE/NSF Review of U.S. LHC Software and Computing  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint DOENSF Status Meeting of U.S. LHC Software and Computing July 8, 2003 at NSF, Arlington, VA Agenda | Documentation | Attendees | Report Purpose: Status review of the U.S....

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


161

Joint DOE/NSF Review of U.S. LHC Software and Computing  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint DOENSF Review of U.S. LHC Software and Computing January 16-17, 2003 at LBNL Purpose: Independent peer review of the U.S. LHC Software and Computing projects to continue...

162

DOE Drives Big Data Push  

NLE Websites -- All DOE Office Websites (Extended Search)

2 Volume 9 Issue 2 2 Volume 9 Issue 2 From YAGS to Planetary Biology . . . . . . . . . . . . . . . 2 DOE Drives Big Data Push . . . . . . . . . . . . . . . . . . . . 3 Sweating Small Scale Genomics . . . . . . . . . . . . . . . 6 The Future of the DOE JGI . . . . . . . . . . . . . . . . . . . . 7 Save the Date for Meeting 8 . . . . . . . . . . . . . . . . . . . 8 also in this issue With a record 488 genomics researchers and bioinformaticians sitting in the Marriott Walnut Creek ballroom, New York Times science writer Carl Zimmer opened the DOE Joint Genome Institute's 7th Annual Genomics of Energy & Environment Meeting on March 20, 2012. Sharing his thoughts about being "On the Genome Beat," he informed the audience that he was worn down by seeing news about scientists successfully sequencing yet another genome sequence, and that "maybe some genomes shouldn't be written about." Zimmer's words engaged the audience in a discussion that

163

DOE Joint Genome Institute: Salt-loving Microbe Provides New Enzymes for  

NLE Websites -- All DOE Office Websites (Extended Search)

June 30, 2011 June 30, 2011 Salt-loving Microbe Provides New Enzymes for the Production of Next Gen Biofuels WALNUT CREEK, Calif.-In order to realize the full potential of advanced biofuels that are derived from non-food sources of lignocellulosic biomass-e.g., agricultural, forestry, and municipal waste, and crops such as poplar, switchgrass and miscanthus-new technologies that can efficiently and cost-effectively break down this biomass into simple sugars are required. Existing biomass pretreatment technologies are typically derived from the pulp and paper industry and rely on dilute acids and bases to break down the biomass. The treated biomass product is then exposed to biological catalysts, or enzymes, to liberate the sugars. Eddy Rubin and Tao Zhang Photo:Tao Zhang (left), and Eddy Rubin (right).

164

DOE Joint Genome Institute: Advancing Next Gen Biofuels by Turning Up the  

NLE Websites -- All DOE Office Websites (Extended Search)

October 2, 2011 October 2, 2011 Advancing Next Gen Biofuels by Turning Up the Heat on Biomass Pretreatment Processes WALNUT CREEK, Calif.-The nation's Renewable Fuels Standard calls for annual production of 36 billion gallons of biofuel by 2022. One of the biggest hurdles to achieving this goal lies in optimizing the multistep process involved in breaking down plant biomass and then converting it into fermentable sugars that can be refined into fuel for our transportation needs. To overcome this challenge, the U.S. Department of Energy supports several projects focused on identifying enzymes from fungi and microbes such as cellulases-that breakdown plant cell walls-and heat-tolerant industrial-strength host cell systems to drive these reactions. Photo: The thermophilic fungus M. thermophila

165

DOE Joint Genome Institute: Waves of Berkeley Lab Responders Deploy Omics  

NLE Websites -- All DOE Office Websites (Extended Search)

1, 2012 1, 2012 Waves of Berkeley Lab Responders Deploy Omics to Track Deepwater Horizon Oil Spill Cleanup Microbes In the aftermath of the Deepwater Horizon oil spill in the Gulf of Mexico two years ago, various strategies were deployed to prevent 4.9 million barrels of light crude oil from fouling the waters and reaching the shores. A team of Lawrence Berkeley National Laboratory (Berkeley Lab) researchers found that nature also played a role in the dispersal process as marine microbial communities responded to the oil plume that made its way from the wellhead at a depth of 5,000 feet to the surface of the water. "There was oil on the surface and oil below, but no oil in between," said microbial ecologist Terry Hazen, former head of the Ecology Department

166

DOE Joint Genome Institute: Getting to the Root-Unearthing the  

NLE Websites -- All DOE Office Websites (Extended Search)

August 1, 2012 August 1, 2012 Getting to the Root- Unearthing the Plant-Microbe Quid Pro Quo While the flower may attract the bee and the admiring eye of the passerby, it is the unseen complex network of life below ground where the action is. The microbial community or microbiome that inhabits the rhizosphere and endosphere -the niches immediately surrounding and inside a plant's root-facilitates the shuttling of nutrients and information into and out of the roots within the soil matrix. This commerce, by enabling the plant to adapt to its immediate environment, contributes to plant health and growth, defense against pests, management of carbon and other elements for the enrichment of the soil, and even informs the plant's ability to sequester contaminants. These underground microbial activities have not

167

DOE Joint Genome Institute: How Now, Inside the Cow: Nearly 30,000 Novel  

NLE Websites -- All DOE Office Websites (Extended Search)

January 27, 2011 January 27, 2011 How Now, Inside the Cow: Nearly 30,000 Novel Enzymes for Biofuel Production Improvements To download Cow Rumen data, go to: http://portal.nersc.gov/project/jgimg/CowRumenRawData/submission/ WALNUT CREEK, Calif.-Cows eat grass-this has been observed for eons. From this fibrous diet consisting mainly of the tough to degrade plant cell wall materials cellulose and hemicellulose, substances of no nutritional value to most animals, ruminants manage to extract all they need to nourish themselves, their progeny and their keepers. And now, the cow, or rather the network of organisms working unseen in the cow's forestomach or rumen, is providing researchers with vital information that may someday accelerate the large-scale deployment of biofuels. This will offer a

168

Video Presentations from the 2009 DOE Joint Genome Institute User Meeting  

DOE Data Explorer (OSTI)

•\tDiversity Generating Retroelements in Bacterial, Phage, and Plasmid Elements, Jeffrey Miller (UCLA) (36:11)

169

JGI - 2009 Genome Sequencing Targets  

NLE Websites -- All DOE Office Websites (Extended Search)

July 2, 2008 July 2, 2008 Pine Tree, Boat-Boring Bivalve "Bugs", Duck Weed, Oil-Producing Microalgae, Stinkbird Gut, 40 Others Top DOE Joint Genome Institute 2009 Genome Sequencing Targets WALNUT CREEK, CA-In the continuing effort to tap the vast, unexplored reaches of the earth's microbial and plant domains for bioenergy and environmental applications, the DOE Joint Genome Institute (DOE JGI) has announced its latest portfolio of DNA sequencing projects that it will undertake in the coming year. The 44 projects, culled from nearly 150 proposals received through the Community Sequencing Program (CSP), represent over 60 billion nucleotides of data to be generated through this biodiversity sampling campaign-roughly the equivalent of 20 human genomes. "The scientific and technological advances enabled by the information

170

Genomics of Climate Resilience (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Eldredge Bermingham of the Smithsonian Tropical Research Institute-Panama on "Genomics of climate resilience" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Bermingham, Eldredge [STRI-Panama

2013-03-27T23:59:59.000Z

171

Genomics of Energy and Environment, 2010: Video Presentations from the Fifth DOE Joint Genome Institute Annual User Meeting  

DOE Data Explorer (OSTI)

•\tThe Promise and Challenge of Producing Biofuel Feedstocks: An Ecological Perspective, Evan DeLucia

172

Genome Analyses and Supplement Data from the International Populus Genome Consortium (IPGC)  

DOE Data Explorer (OSTI)

The sequencing of the first tree genome, that of Populus, was a project initiated by the Office of Biological and Environmental Research in DOE’s Office of Science. The International Populus Genome Consortium (IPGC) was formed to help develop and guide post-sequence activities. The IPGC website, hosted at the Oak Ridge National Laboratory, provides draft sequence data as it is made available from DOE Joint Genome Institute, genome analyses for Populus, lists of related publications and resources, and the science plan. The data are available at http://www.ornl.gov/sci/ipgc/ssr_resource.htm.

International Populus Genome Consortium (IPGC)

173

Genomics Presentations from the 8th Meeting of the Genomic Standards Consortium (2009), held at the DOE JGI (Videos)  

DOE Data Explorer (OSTI)

•\tA New ARM of the GSC: the RCN4GSC, Dawn Field and Peter Sterk •\tStandards in Genomic Sciences (SIGS): An Open Access Journal of the Genomic Standards Consortium, George Garrity •\tGSC8 Opening Remarks, Dawn Fields

174

First joint SPE/DOE symposium on enhanced oil recovery, proceedings supplement  

SciTech Connect

The First Joint Symposium on Enhanced Oil Recovery sponsored by the Society of Petroleum Engineers and the US Department of Energy was held in Tulsa, Oklahoma. Besides the thirty-three technical papers which covered all phases of enhanced oil recovery and were published in the Proceedings, the Symposium included a session on Enhanced Oil Recovery Incentives where ten papers were presented which discussed the status of enhanced oil recovery technology, and included papers on incentive programs of the United States, Canada and Venezuela. These papers are published in this Proceedings Supplement under the following titles: Federal Government Role in enhanced Oil Recovery; Financial Realities of an Adequate Petroleum Supply; Major Technology Constraints in Enhanced Oil Recovery; Decontrol-Opportunities and Dangers; Status of EOR Technology; Impact of Federal Incentives on US Production; Canadian Incentives Program; and Heavy Oil Incentives in Venezuela.

Not Available

1980-01-01T23:59:59.000Z

175

DOE-DOD-USDA Joint Initiative to use DPA to support US Biorefineries  

Gasoline and Diesel Fuel Update (EIA)

| Biomass Program eere.energy.gov | Biomass Program eere.energy.gov DOE Perspectives on Advanced Hydrocarbon-based Biofuels U.S. Department of Energy Office of Biomass Program August 1, 2012 Zia Haq DPA Coordinator Advanced Biofuels Workshop 2 | Office of the Biomass Program eere.energy.gov Resource Assessment - "Billion Ton Update" U.S. Billion-Ton Update: Biomass Supply for a Bioenergy and Bioproducts Industry Data and analysis tools located on the Knowledge Discovery Framework: http://bioenergykdf.net * Provides current and potential available biomass for 2012-2030 * Estimates are at the county level and for a range of costs to roadside * Has scenarios based on crop yields and tillage practices * Models land use for energy crops and ensures meet food, forage, and

176

DOE Human Genome Program: Contractor-Grantee Workshop IV, November 13--17, 1994, Santa Fe, New Mexico  

SciTech Connect

This volume contains the proceedings of the fourth Contractor-Grantee Workshop for the Department of Energy (DOE) Human Genome Program. Of the 204 abstracts in this book, some 200 describe the genome research of DOE-funded grantees and contractors located at the multidisciplinary centers at Lawrence Berkeley Laboratory, Lawrence Livermore National Laboratory, and Los Alamos National Laboratory; other DOE-supported laboratories; and more than 54 universities, research organizations, and companies in the United States and abroad. Included are 16 abstracts from ongoing projects in the Ethical, Legal, and Social Issues (ELSI) component, an area that continues to attract considerable attention from a wide variety of interested parties. Three abstracts summarize work in the new Microbial Genome Initiative launched this year by the Office of Health and Environmental Research (OHER) to provide genome sequence and mapping data on industrially important microorganisms and those that live under extreme conditions. Many of the projects will be discussed at plenary sessions held throughout the workshop, and all are represented in the poster sessions.

Not Available

1994-10-01T23:59:59.000Z

177

The DOE-JGI Standard Operating Procedure for the Annotations of the Microbial Genomes  

E-Print Network (OSTI)

1:63-67 DOI:10.4056/sigs.632 The DOE-JGI Standard OperatingtRNA-Scan, RNAmmer, Rfam, IMG-ER. The DOE-JGI MicrobialAnnotation Pipeline (DOE-JGI MAP) supports gene prediction

Mavromatis, Konstantinos

2010-01-01T23:59:59.000Z

178

JGI Fungal Genomics Program  

E-Print Network (OSTI)

View Supports functional genomics, user data deposition andJGI Fungal Genomics Program Igor V. Grigoriev 1 DOE Jointof California. JGI Fungal Genomics Program Contact: Igor

Grigoriev, Igor V.

2011-01-01T23:59:59.000Z

179

Genomics Presentations from DOE JGI's Fourth Annual Sequencing, Finishing, Analysis in the Future Meeting, 2009  

DOE Data Explorer (OSTI)

•\tMedicago trunculata Resequencing of 384 lines, Joann Mudge •\tPerformance Comparison of Two Genome Partitioning Platforms, Jon Armstrong •\tPrescreening Illumina Data Results in High-Quality Genome Polishing, Cliff Han •\tGenePRIMP: Improving Microbial Gene Prediction Quality, Amrita Pati •\tIMG Systems for Comparative Analysis of Microbial Genomes and Metagenomes, Victor Markowitz •\tAutomated Microbial Genome Annotation, Miriam Land •\tNew Technology Drafts: Production and Improvements, Alla Lapidus •\tHuman Microbiome Finishing, Jessica Hostetler

180

Genomics of Energy and Environment: the 7th Annual, 2012, DOE JGI User Meeting  

DOE Data Explorer (OSTI)

•\tOmics in the Artic: Genome-enabled Contributions to Carbon Cycle Research in Low-Latitude Ecosystems (Stan Wullschleger)

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


181

Synthetic Metagenomics: Converting digital information back to Biology (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Sam Deutsch of the DOE JGI on "Synthetic Metagenomics: Converting digital information back to Biology" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

Deutsch, Sam [DOE Joint Genome Institute

2013-03-01T23:59:59.000Z

182

Metagenome Assembly at the DOE JGI (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)  

Science Conference Proceedings (OSTI)

Patrick Chain of DOE JGI at LANL, Co-Chair of the Metagenome-specific Assembly session, on "Metagenome Assembly at the DOE JGI" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

Chain, Patrick [DOE JGI at LANL

2011-10-13T23:59:59.000Z

183

Opening Remarks from the Joint Genome Institute and Argonne Lab High Performance Computing Workshop (2010 JGI/ANL HPC Workshop)  

SciTech Connect

DOE JGI Director Eddy Rubin gives opening remarks at the JGI/Argonne High Performance Computing (HPC) Workshop on January 25, 2010.

Rubin, Eddy

2010-01-25T23:59:59.000Z

184

JGI Genomics and Bioinformatics for Undergraduate Educators Workshop |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

JGI Genomics and Bioinformatics for Undergraduate Educators JGI Genomics and Bioinformatics for Undergraduate Educators Workshop JGI Genomics and Bioinformatics for Undergraduate Educators Workshop March 23, 2013 3:00PM EDT to March 26, 2013 6:00PM EDT University of California The JGI will be holding the JGI Genomics and Bioinformatics for Undergraduate Educators Workshop in conjunction with the JGI User Meeting. The workshop will take place March 23-26, 2013 at the JGI. The DOE Joint Genome Institute's Education Program is providing opportunities for colleges and universities across the country to "interpret" bacterial genomes, such as those sequenced as part of the GEBA project, for analysis. This "Interpret a GEBA Genome" Education Program makes available a selection of recently sequenced genomes

185

New Approaches and Technologies to Sequence de novo Plant reference Genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Jeremy Schmutz of the HudsonAlpha Institute for Biotechnology on "New approaches and technologies to sequence de novo plant reference genomes" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Schmutz, Jeremy [HudsonAlpha Institute

2013-03-01T23:59:59.000Z

186

The Challenges and Opportunities for Extending Plant Genomics to Climate (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

David Weston of Oak Ridge National Laboratory on "The challenges and opportunities for extending plant genomics to climate" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Weston, David [ORNL

2013-03-01T23:59:59.000Z

187

Uncovering Transcriptional Circuits in Arabidoposis by Functional Genomics (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Jose Pruneda-Paz of UC San Diego on "Uncovering Transcriptional Circuits in Arabidopsis by Functional Genomics" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

Pruneda-Paz, Jose [UC San Diego

2013-03-01T23:59:59.000Z

188

Algal Functional Annotation Tool from the DOE-UCLA Institute for Genomics and Proteomics  

DOE Data Explorer (OSTI)

The Algal Functional Annotation Tool is a bioinformatics resource to visualize pathway maps, identify enriched biological terms, or convert gene identifiers to elucidate biological function in silico. These types of analysis have been catered to support lists of gene identifiers, such as those coming from transcriptome gene expression analysis. By analyzing the functional annotation of an interesting set of genes, common biological motifs may be elucidated and a first-pass analysis can point further research in the right direction. Currently, the following databases have been parsed, processed, and added to the tool:

  • Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathways Database
  • MetaCyc Encyclopedia of Metabolic Pathways
  • Panther Pathways Database
  • Reactome Pathways Database
  • Gene Ontology
  • MapMan Ontology
  • KOG (Eukaryotic Clusters of Orthologous Groups)
  • Pfam
  • InterPro

Lopez, David

189

Does  

NLE Websites -- All DOE Office Websites (Extended Search)

Does Does the cellulose-binding module move on the cellulose surface? Yu-San Liu Æ Yining Zeng Æ Yonghua Luo Æ Qi Xu Æ Michael E. Himmel Æ Steve J. Smith Æ Shi-You Ding Received: 26 November 2008 / Accepted: 11 May 2009 / Published online: 19 June 2009 Ó Springer Science+Business Media B.V. 2009 Abstract Exoglucanases are key enzymes required for the efficient hydrolysis of crystalline cellulose. It has been proposed that exoglucanases hydrolyze cellulose chains in a processive manner to produce primarily cellobiose. Usually, two functional modules are involved in the processive mechanism: a catalytic module and a carbohydrate-binding module (CBM). In this report, single molecule tracking techniques were used to analyze the molecular motion of CBMs labeled with quantum dots (QDs) and bound to cellulose crystals. By tracking the single QD, we observed that the family 2 CBM from

190

Major DOE Biofuels Project Locations  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

(St. Joseph, MO) Abengoa Biochemica Agricultural Residue (Hugoton, KS) DOE Joint Bioenergy Institute (Berkeley, CA) DOE Great Lakes Bioenergy Research Center (Madison, WI) DOE...

191

JGI - DOE Sequencing Projects  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Sequencing Projects For status information, see the Genome Projects section Organism Est. Genome Size Branchiostoma floridae (Florida lancelet) 600 Mb Chlamydomonas reinhardtii...

192

Structural Biology | U.S. DOE Office of Science (SC)  

Office of Science (SC) Website

Structural Biology Structural Biology Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3251 F: (301)

193

Genomics of Plant-based Biofuels in the Journal Nature  

NLE Websites -- All DOE Office Websites (Extended Search)

3, 2008 3, 2008 DOE JGI Director Eddy Rubin Highlights the Genomics of Plant-based Biofuels in the Journal Nature WALNUT CREEK, CA-Genomics is accelerating improvements for converting plant biomass into biofuel-as an alternative to fossil fuel for the nation's transportation needs, reports Eddy Rubin, Director of the U.S. Department of Energy Joint Genome Institute (DOE JGI), in the August 14 edition of the journal Nature. In "Genomics of cellulosic biofuels," Rubin lays out a path forward for how emerging genomic technologies will contribute to a substantially different biofuels future as compared to the present corn-based ethanol industry-and in part mitigate the food-versus-fuel debate. The Nature Review is available for download (by subscription) at http://www.nature.com/.

194

DOE  

Gasoline and Diesel Fuel Update (EIA)

DOE DOE /E/A- 0202( 83//Q J Sh or t-T er m En er gy O ut lo ok a to m Quar terly Proje ction s Febru ary 1983 Ene rgy Info rma tion Adm inist ratio n Was hing ton, D.C. t rt jrt .or t lor t lor t .lor t- ior t- ior t <.o rt ort . m .er m -Te rm -Te rm -Te rm -Te rm -Te rm -Te rm -Te rm -Te rm -Te rm -Te rm -Te rm -Te rm -T erm -T erm -T erm Nrm ue rgy En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y En erg y ^n erg y Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Ou tlo ok Sh ort -T erm 1 Sh ort -T erm Sh ort -T erm Sh ort -T erm Sh ort -T erm Sh ort -T erm Sh ort -T erm Sh ort -T erm Sh ort -T erm Sh ort -T erm Sh ort -T erm Sh ort -T erm

195

Introduction to Metagenomics at DOE JGI (Opening Remarks for the Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)  

Science Conference Proceedings (OSTI)

After a quick introduction by DOE JGI Director Eddy Rubin, DOE JGI's Nikos Kyrpides delivers the opening remarks at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011

Kyrpides, Nikos [DOE JGI

2011-10-12T23:59:59.000Z

196

Genomics Encyclopedia of Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB): a resource for microsymbiont genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Wayne Reeve of Murdoch University on "Genomics Encyclopedia of Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB): a resource for microsymbiont genomes" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Reeve, Wayne [Murdoch University

2013-03-01T23:59:59.000Z

197

Genomic Speciation and Adaptation in Aquilegia (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Scott Hodges of the University of California, Santa Barbara gives a presentation on "Genomic Speciation and Adaptation in Aquilegia" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Hodges, Scott [University of California, Santa Barbara

2011-03-23T23:59:59.000Z

198

Genomics of Extinct and Endangered Species (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Stephen Shuster of Penn State University gives a presentation on "Genomics of Extinct and Endangered Species" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Shuster, Stephen [Penn State University

2011-03-23T23:59:59.000Z

199

Complete genome sequence of Ferroglobus placidus AEDII12DO  

Science Conference Proceedings (OSTI)

Ferroglobus placidus belongs to the order Archaeoglobales within the archaeal phylum Euryar- chaeota. Strain AEDII12DO is the type strain of the species and was isolated from a shallow marine hydrothermal system at Vulcano, Italy. It is a hyperthermophilic, anaerobic chemoli- thoautotroph, but it can also use a variety of aromatic compounds as electron donors. Here we describe the features of this organism together with the complete genome sequence and anno- tation. The 2,196,266 bp genome with its 2,567 protein-coding and 55 RNA genes was se- quenced as part of a DOE Joint Genome Institute Laboratory Sequencing Program (LSP) project.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Risso, Carla [University of Massachusetts, Amherst; Holmes, Dawn [University of Massachusetts, Amherst; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Thomas S [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Lovley, Derek [University of Massachusetts, Amherst; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

200

Complete genome sequence of Staphylothermus hellenicus P8T  

SciTech Connect

Staphylothermus hellenicus belongs to the order Desulfurococcales within the archaeal phy- lum Crenarchaeota. Strain P8T is the type strain of the species and was isolated from a shal- low hydrothermal vent system at Palaeochori Bay, Milos, Greece. It is a hyperthermophilic, anaerobic heterotroph. Here we describe the features of this organism together with the com- plete genome sequence and annotation. The 1,580,347 bp genome with its 1,668 protein- coding and 48 RNA genes was sequenced as part of a DOE Joint Genome Institute (JGI) La- boratory Sequencing Program (LSP) project.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Wirth, Reinhard [Universitat Regensburg, Regensburg, Germany; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Davenport, Karen W. [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


201

JGI CSP Delivers First Moss Genome  

NLE Websites -- All DOE Office Websites (Extended Search)

13, 2007 13, 2007 DOE JGI Community Sequencing Program Delivers First Moss Genome WALNUT CREEK, CA--Messages from nearly a half-billion years ago, conveyed via the inventory of genes sequenced from a present-day moss, provide clues about the earliest colonization of dry land by plants. The U.S. Department of Energy Joint Genome Institute (DOE JGI) was among the leaders of an international effort uniting more than 40 institutions to complete the first genome sequencing project of a nonvascular land plant, the moss Physcomitrella patens. The team's insights into the code that enabled this seminal emergence and dominance of land by plants are published December 13 online in Science Express. Scanning electron micrograph of Physcomitrella patens gametophores (moss shoots).

202

Rhodopseudomonas palustris genome project. Final report  

DOE Green Energy (OSTI)

Rhodopseudomonas palustris is a common soil and water bacterium that makes its living by converting sunlight to cellular energy and by absorbing atmospheric carbon dioxide and converting it to biomass. This microbe can also degrade and recycle components of the woody tissues of plants, wood being the most abundant polymer on earth. Because of its intimate involvement in carbon management and recycling, R. palustris was selected by the DOE Carbon Management Program to have its genome sequenced by the Joint Genome Institute (JGI). This award provided funds for the preparation of R. palustris genomic DNA which was then supplied to the JGI in sufficient amounts to enable the complete sequencing of the R. palustris genome. The PI also supplied the JGI with technical information about the molecular biology of R. palustris.

Harwood, Caroline S.

2000-11-22T23:59:59.000Z

203

Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b  

Science Conference Proceedings (OSTI)

Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physicochemical gradient. This genome was sequenced to be a comparative resource for the study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy s (DOE s) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

Vishnivetskaya, T. [University of Tennessee, Knoxville (UTK); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L [ORNL; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Tom [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Kathariou, Sophia [North Carolina State University; Ramaley, Robert F. [University of Nebraska Medical Center; Rodrigues, Debora F. [University of Houston, Houston; Hendrix, Christie [Yellowstone National Park; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; Tiedje, James M. [Michigan State University, East Lansing

2011-01-01T23:59:59.000Z

204

Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b  

Science Conference Proceedings (OSTI)

Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physico-chemical gradient. This genome was sequenced to be a comparative resource for study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy's (DOE) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

Vishnivetskaya, T. [University of Tennessee, Knoxville (UTK); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Brettin, Thomas S [ORNL; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Kathariou, Sophia [North Carolina State University; Ramaley, Robert F. [University of Nebraska Medical Center; Rodrigues, Debora F. [University of Houston, Houston; Hendrix, Christie [Yellowstone National Park; Richardson, Paul [U.S. Department of Energy, Joint Genome Institute; Tiedje, James M. [Michigan State University, East Lansing

2011-01-01T23:59:59.000Z

205

Regulation of Flowering in Brachypodium distachyon (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Rick Amasino of the University of Wisconsin on "Regulation of Flowering in Brachypodium distachyon" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Amasino, Rick [University of Wisconsin

2013-03-01T23:59:59.000Z

206

Strange Tails: Viral Discovery & Deep Sequencing (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Joe DeRisi of UC San Francisco on "Strange Tails: Viral discovery & deep sequencing" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

DeRisi, Joe [UCSF

2013-03-01T23:59:59.000Z

207

Part Mining for Synthetic Biology (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Chris Voigt from MIT delivers the opening keynote on "Part Mining for Synthetic Biology" at the 8th Annual Genomics of Energy & Environment Meeting on March 26, 2013 in Walnut Creek, Calif.

Voigt, Chris [MIT

2013-03-01T23:59:59.000Z

208

PMI: Plant-Microbe Interfaces (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Christopher Schadt of Oak Ridge National Laboratory on "Plant-Microbe Interactions" in the context of poplar trees at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 held in Walnut Creek, Calif.

Schadt, Christopher [ORNL

2013-03-01T23:59:59.000Z

209

2009 JGI DOE User Meeting  

NLE Websites -- All DOE Office Websites (Extended Search)

Department of Energy Joint Genome Institute (JGI) Fourth Annual User Meeting Marriott Hotel in Walnut Creek, California March 25-27, 2009 The U.S. Department of Energy Joint...

210

Joint DOE-Rosatom Statement  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

preferred disposition method for such plutonium to implement the 2000 Agreement is irradiation of nuclear fuel in reactors. Their expert groups are directed to: * Provide for the...

211

Joint USDA/DOE meeting  

DOE Green Energy (OSTI)

This documents contains the details from the USDA/USDOE meeting on April 11--12, 1994. Topics discussed include: genetic research, environmental research, renewable energy sources, food supply, improved fertilizers, new pesticides, research programs combining the efforts of the two agencies to develop new products for use in the agriculture industry, environmentally safe products, getting more with less money, and various other subjects dealing with how cooperation among these agencies can improve the agriculture industry.

Not Available

1994-07-01T23:59:59.000Z

212

Upgraded IMG Data Management System Released by DOE JGI to Eager User  

NLE Websites -- All DOE Office Websites (Extended Search)

4, 2007 4, 2007 Upgraded Integrated Microbial Genomes (IMG) Data Management System Released by DOE JGI to Eager User Community WALNUT CREEK, CA--A powerful set of computational tools established to ease the visualization and exploration of genomes flooding the public domain is now available in IMG Version 2.3--the Integrated Microbial Genomes (IMG) data management system hosted by the U.S. Department of Energy Joint Genome Institute (DOE JGI). The content of IMG 2.3, upgraded with new microbial genomes from the Version 23 release of the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) collection, now includes fungi, protists (eukaryotic unicellular organisms), and plant genomes to enhance the breadth of comparative analysis. A new addition of particular interest to

213

ZipperDB: Predictions of Fibril-forming Segments within Proteins Identified by the 3D Profile Method (from the UCLA-DOE Institute for Genomics and Proteomics)  

DOE Data Explorer (OSTI)

ZipperDB contains predictions of fibril-forming segments within proteins identified by the 3D Profile Method. The UCLA-DOE Institute for Genomics and Proteomics has analyzed over 20,000 putative protein sequences for segments with high fibrillation propensity that could form a "steric zipper"ůtwo self-complementary beta sheets, giving rise to the spine of an amyloid fibril. The approach is unique in that structural information is used to evaluate the likelihood that a particular sequence can form fibrils. [copied with edits from http://www.doe-mbi.ucla.edu/]. In addition to searching the database, academic and non-profit users may also submit their protein sequences to the database.

Goldschmidt, L.; Teng, P.K.; Riek, R.; Eisenberg, D.

214

Biological Systems Science Division (BSSD) | U.S. DOE Office of Science  

Office of Science (SC) Website

Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3251 F: (301)

215

Radiochemistry & Imaging Instrumentation | U.S. DOE Office of Science (SC)  

Office of Science (SC) Website

Radiochemistry & Imaging Instrumentation Radiochemistry & Imaging Instrumentation Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3251 F: (301)

216

Low Dose Radiation | U.S. DOE Office of Science (SC)  

Office of Science (SC) Website

Radiobiology: Low Dose Radiation Radiobiology: Low Dose Radiation Research Biological and Environmental Research (BER) BER Home About Research Research Abstracts Searchable Archive of BER Highlights External link Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Structural Biology DOE Joint Genome Institute Climate and Environmental Sciences Division (CESD) Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3251 F: (301)

217

Funding Opportunities | U.S. DOE Office of Science (SC)  

NLE Websites -- All DOE Office Websites (Extended Search)

Opportunities Opportunities Funding Opportunities Grants & Contracts Support Award Search Find Funding Early Career Research Program Contact Information Office of Science U.S. Department of Energy 1000 Independence Ave., SW Washington, DC 20585 P: (202) 586-5430 JGI Illumina Genome Sequencers BNL Joint Genome Institute genome sequencers. Lawrence Berkeley National Laboratory Print Text Size: A A A RSS Feeds FeedbackShare Page The Office of Science issues two types of funding announcements: Funding Opportunity Announcements (FOAs), which may be open to one or more institution types (please read the eligibility requirements in a given FOA for details); and DOE National Laboratory Announcements, which are open only to DOE Laboratories. FOAs and DOE National Laboratory Announcements may be issued either as

218

Genomic and Systems Biology Analyses of Social Behavior or Evolutionary Genomic Analyses of Insect Society: Eat, Drink, and Be Scary (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gene Robinson of the University of Illinois on "Genomic and Systems Biology Analyses of Social Behavior" at the 6th Annual Genomics of Energy & Environment Meeting on March 23, 2011

Robinson, Gene

2011-03-23T23:59:59.000Z

219

Joint popping  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint popping Name: danb Status: NA Age: NA Location: NA Country: NA Date: Around 1993 Question: Why do your joints pop? For example, when I am walking my ankle always makes a...

220

Genomic Advances to Improve Biomass for Biofuels (Genomics and Bioenergy)  

DOE Green Energy (OSTI)

Lawrence Berkeley National Lab bioscientist Daniel Rokhsar discusses genomic advances to improve biomass for biofuels. He presented his talk Feb. 11, 2008 in Berkeley, California as part of Berkeley Lab's community lecture series. Rokhsar works with the U.S. Department of Energy's Joint Genome Institute and Berkeley Lab's Genomics Division.

Rokhsar, Daniel

2008-02-11T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


221

About | U.S. DOE Office of Science (SC)  

Office of Science (SC) Website

About About Biological and Environmental Research (BER) BER Home About Staff Organization Chart .pdf file (172KB) BER Budget BER Committees of Visitors Directions Jobs Research Facilities Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3251 F: (301) 903-5051 E: sc.ber@science.doe.gov More Information » About Print Text Size: A A A RSS Feeds FeedbackShare Page BER's scientific impact has been transformative. In 1986, the Human Genome Project gave birth to modern biotechnology and genomics-based systems biology. Today, with its Genomic Sciences Program and the DOE Joint

222

Ceramic joints  

DOE Patents (OSTI)

Butt joints between materials having different coefficients of thermal expansion are prepared having a reduced probability of failure of stress facture. This is accomplished by narrowing/tapering the material having the lower coefficient of thermal expansion in a direction away from the joint interface and not joining the narrow-tapered surface to the material having the higher coefficient of thermal expansion.

Miller, Bradley J. (Worcester, MA); Patten, Jr., Donald O. (Sterling, MA)

1991-01-01T23:59:59.000Z

223

Joint Staff, and J-Directorate Directives”  

E-Print Network (OSTI)

1. Purpose a. To provide the process and procedures for handling the transition and reconciliation of USJFCOM issuances into CJCS/Joint Staff directives in accordance with (IAW) references a and b. b. For the purpose of this notice, the word “issuances ” refers to USJFCOM policy documents, and the word “directives ” refers to Joint Staff policy documents. 2. Cancellation. None. 3. Applicability. This notice applies to all Joint Staff personnel and to all U.S. Joint Forces Command (USJFCOM) directorates, organizations, or other subordinate activities transitioning to the Joint Staff. It does not apply to USJFCOM entities transitioning to organizations outside the Joint Staff.

Dom/sjs Cjcs Notice

2011-01-01T23:59:59.000Z

224

Association Genetics of Populus trichocarpa or Resequencing in Populus: Towards Genome Wide Association Genetics (2011 JGI User Meeting)  

Science Conference Proceedings (OSTI)

The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Gerry Tuskan of Oak Ridge National Laboratory on "Resequencing in Populus: Towards Genome Wide Association Genetics" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

Tuskan, Gerry

2011-03-23T23:59:59.000Z

225

To Know Ourselves: The U.S. Department of Energy and The Human Genome Project  

DOE R&D Accomplishments (OSTI)

The Genome Project and its various aspects: why the DOE?; introducing the human genome; exploring the genomic landscape; beyond biology; and ethical, legal, and social implications.

1996-07-00T23:59:59.000Z

226

March 13-15, 2012 14th Annual Joint DOE/EFCOG Chemical Safety and Worker Safety and Health Program (10 CFR 851) Workshop - Agenda  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

/2/12 Page 4 of 11 /2/12 Page 4 of 11 Day 3 - Thursday, March 15, 2012 FORRESTAL MAIN AUDITORIUM (GE-086) 10 CFR 851 Workshop The purpose of this workshop is to foster continuous improvement of the implementation of 10 CFR 851 by sharing implementation experiences and ideas for enhancements gathered over the nearly 5 years since the rule's date for full implementation. 8:00 - 10:00 Registration/Name Tags - Large Auditorium (GE-086) 9:15 - 9:25 Welcome to 10 CFR 851 Workshop Pat Worthington Director, DOE Office of Health and Safety 9:25 - 9 :35 Introduction to HSS Focus Group Bill Eckroade

227

Facilities | U.S. DOE Office of Science (SC)  

Office of Science (SC) Website

Facilities Facilities Biological and Environmental Research (BER) BER Home About Research Facilities DOE Joint Genome Institute (JGI) ARM Climate Research Facility Environmental Molecular Sciences Laboratory Facility Metrics Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) News & Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3251 F: (301) 903-5051 E: sc.ber@science.doe.gov More Information » Facilities Print Text Size: A A A RSS Feeds FeedbackShare Page BER User Facilities DOE designs, develops, builds, and operates unique, world-class facilities for the benefit of the entire research community. DOE Office of Science

228

Jointly Sponsored Research Program  

DOE Green Energy (OSTI)

U.S. Department of Energy (DOE) Cooperative Agreement DE-FC26-98FT40321 funded through the Office of Fossil Energy and administered at the National Energy Technology Laboratory (NETL) supported the performance of a Jointly Sponsored Research Program (JSRP) at the Energy & Environmental Research Center (EERC) with a minimum 50% nonfederal cost share to assist industry in commercializing and effectively applying highly efficient, nonpolluting energy systems that meet the nation's requirements for clean fuels, chemicals, and electricity in the 21st century. The EERC in partnership with its nonfederal partners jointly performed 131 JSRP projects for which the total DOE cost share was $22,716,634 (38%) and the nonfederal share was $36,776,573 (62%). Summaries of these projects are presented in this report for six program areas: (1) resource characterization and waste management, (2) air quality assessment and control, (3) advanced power systems, (4) advanced fuel forms, (5) value-added coproducts, and (6) advanced materials. The work performed under this agreement addressed DOE goals for reductions in CO{sub 2} emissions through efficiency, capture, and sequestration; near-zero emissions from highly efficient coal-fired power plants; environmental control capabilities for SO{sub 2}, NO{sub x}, fine respirable particulate (PM{sub 2.5}), and mercury; alternative transportation fuels including liquid synfuels and hydrogen; and synergistic integration of fossil and renewable resources.

Everett A. Sondreal; John G. Hendrikson; Thomas A. Erickson

2009-03-31T23:59:59.000Z

229

Los Alamos National Laboratory: Bioscience Division: Genome Science...  

NLE Websites -- All DOE Office Websites (Extended Search)

areas. B-6 Teams Applications Bioinformatics Computational Finishing Project Management Sequencing Technology Focus on Research Links Resources Joint Genome Institute (JGI)...

230

The Microbial Genomics and Metagenomics (MGM) five-day  

NLE Websites -- All DOE Office Websites (Extended Search)

Microbial Genomics and Metagenomics (MGM) five-day workshop (www.jgi.doe.gov meetingsmgm) provides strong and solid training in microbial genomic and metagenomic analysis and...

231

Genome Science/Technologies  

NLE Websites -- All DOE Office Websites (Extended Search)

Science & Innovation » Science & Innovation » Science & Engineering Capabilities » Bioscience: Bioenergy, Biosecurity, and Health » Environmental Microbiology » Genome Genome Science/Technologies Los Alamos using cutting-edge sequencing, finishing, and analysis, impact valuable genomic data. Get Expertise Cheryl Kuske DOE BER Biological System Science Division Program Manager Email Srinivas Iyer Bioscience Group Leader Email Momchilo Vuyisich Bioenergy and Biomedical Sciences Email Rebecca McDonald Bioscience Communications Email State-of-the art technology and extensive genomics expertise Protein research Read caption + Los Alamos National Laboratory graduate student, Patricia Langan, changes the properties of a green fluorescent protein in order to create new fluorescent protein variants.

232

Metabolic Engineering of Clostridium thermocellum for Biofuel Production (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Adam Guss of Oak Ridge National Lab on "Metabolic engineering of Clostridium thermocellum for biofuel production" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

Guess, Adam [ORNL

2013-03-01T23:59:59.000Z

233

Assembly-driven metagenomics of a hypersaline microbial ecosystem (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Eric Allen of Scripps and UC San Diego on "Assembly-driven metagenomics of a hypersaline microbial ecosystem" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Allen, Eric [Scripps and UCSD

2013-03-01T23:59:59.000Z

234

Network as Discovery Instrument: A Quick-Start Guide (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Gregory Bell of Berkeley Lab on "Network as discovery instrument: a Quick-Start Guide" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

Bell, Gregory [Berkeley Lab

2013-03-01T23:59:59.000Z

235

Succession of Phylogeny and Function During Plant Litter Decomposition (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Eoin Brodie of Berkeley Lab on "Succession of phylogeny and function during plant litter decomposition" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Brodie, Eoin [Berkeley Lab

2013-03-01T23:59:59.000Z

236

Biodiversity Monitoring Using NGS Approaches on Unusual Substrates (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Tom Gilbert of the Natural History Museum of Denmark on "Biodiversity monitoring using NGS approaches on unusual substrates" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

Gilbert, Tom [National History Museum of Denmark

2013-03-01T23:59:59.000Z

237

Modulation of Root Microbiome Community Assembly by the Plant Immune Response (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Sarah Lebeis of University of North Carolina on "Modulation of root microbiome community assembly by the plant immune response" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

Lebeis, Sarah [University of North Carolina

2013-03-01T23:59:59.000Z

238

Delineating Molecular Interaction Mechanisms in an In Vitro Microbial-Pant Community (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Peter Larsen of Argonne National Lab on "Delineating molecular interaction mechanisms in an in vitro microbial-plant community" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

Larsen, Peter [Argonne

2013-03-01T23:59:59.000Z

239

Genetic Regulation of Grass Biomass Accumulation and Biological Conversion Quality (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Sam Hazen of the University of Massachusetts on "Genetic Regulation of Grass Biomass Accumulation and Biological Conversion Quality" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Hazen, Sam [University of Massachusetts

2013-03-01T23:59:59.000Z

240

TARA OCEANS: A Global Analysis of Oceanic Plankton Ecosystems (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Eric Karsenti of EMBL delivers the closing keynote on "TARA OCEANS: A Global Analysis of Oceanic Plankton Ecosystems" at the 8th Annual Genomics of Energy & Environment Meeting on March 28, 2013 in Walnut Creek, Calif.

Karsenti, Eric [EMBL Heidelberg

2013-03-01T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


241

Natural variation in Brachypodium disctachyon: Deep Sequencing of Highly Diverse Natural Accessions (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)  

SciTech Connect

Sean Gordon of the USDA on "Natural variation in Brachypodium disctachyon: Deep Sequencing of Highly Diverse Natural Accessions" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

Gordon, Sean [USDA

2013-03-01T23:59:59.000Z

242

Genomics and Systems Biology  

NLE Websites -- All DOE Office Websites (Extended Search)

Genomics and Systems Biology Genomics and Systems Biology Genomics and Systems Biology Los Alamos scientists perform research in functional genomics and structural genomics, and applications for such work cover diverse fields such as energy, agriculture, and environmental cleanup. Get Expertise Babetta Marrone Biofuels Program Manager Email Cheryl Kuske DOE BER Biological System Science Division Program Manager Email Chris Detter Emerging Threats Program Manager: Email Rebecca McDonald Bioscience Communications Email "We were asked to build a rocket ship," said developer Joel Berendzen, "but instead we built a 10,000 mph motorcycle." - Sequedex team LANL leads the world in computational finishing of microbial genomes Protein research Read caption + In 2013, Los Alamos scientist Richard Sayre and his team genetically

243

Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)  

SciTech Connect

Chromohalobacter salexigens is one of nine currently known species of the genus Chromoha- lobacter in the family Halomonadaceae. It is the most halotolerant of the so-called mod- erately halophilic bacteria currently known and, due to its strong euryhaline phenotype, it is an established model organism for prokaryotic osmoadaptation. C. salexigens strain 1H11T and Halomonas elongata are the first and the second members of the family Halomonada- ceae with a completely sequenced genome. The 3,696,649 bp long chromosome with a total of 3,319 protein-coding and 93 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2004.

Copeland, A [U.S. Department of Energy, Joint Genome Institute; O'Connor, Kathleen [Purdue University; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Berry, Kerrie W. [United States Department of Energy Joint Genome Institute; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Vargas, Carmen [University of Seville; Nieto, Joaquin J. [University of Seville; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Csonka, Laszlo N. [Purdue University; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

244

DOE JGI Releases a New Version of its Metagenome Data Management & Analysis  

NLE Websites -- All DOE Office Websites (Extended Search)

February 7, 2008 February 7, 2008 DOE JGI Releases a New Version of its Metagenome Data Management & Analysis System WALNUT CREEK, CA--Targeting its ever-expanding user community, the U.S. Department of Energy Joint Genome Institute (DOE JGI) has released an upgraded version of the IMG/M metagenome data management and analysis system, accessible to the public at http://img.jgi.doe.gov/m. IMG/M provides tools for analyzing the functional capability of microbial communities based on their metagenome DNA sequence in the context of reference isolate genomes. The new version of IMG/M includes five additional metagenome datasets generated from microbial community samples that were the subject of recently published studies. These include the metagenomic and functional analysis of termite hindgut microbiota (Nature

245

NERSC/DOE BER Requirements Workshop Participants  

NLE Websites -- All DOE Office Websites (Extended Search)

for Biological and Environmental Research: Target 2017 A Joint ASCR BER NERSC Requirements Review September 11-12, 2012 DOE NERSC Participants and Organizers Name...

246

WIPP - Joint Information Center  

NLE Websites -- All DOE Office Websites (Extended Search)

The Joint Information Center is located at 4021 National Parks Highway in Carlsbad, N.M. Joint Information Center In the unlikely event of an emergency, the WIPP Joint Information...

247

DOE Policy on Decommissioning DOE Facilities Under CERCLA | Department of  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

DOE Policy on Decommissioning DOE Facilities Under DOE Policy on Decommissioning DOE Facilities Under CERCLA DOE Policy on Decommissioning DOE Facilities Under CERCLA In May 1995, the Department of Energy (DOE) issued a policy in collaboration with the Environmental Protection Agency (EPA) for decommissioning surplus DOE facilities consistent with the requirements of the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA). This policy ensures protection of the environment, worker health and public health, provides opportunities for stakeholder involvement, and achieves risk reduction without unnecessary delay. Consistent with the jointly issued "Guidance on Accelerating CERCLA Environmental Restoration at Federal Facilities" (August 22, 1994), this decommissioning policy encourages streamlined decision-making. This

248

Genomic Sequencing of Single Bacterial Cells (2010 JGI User Meeting)  

SciTech Connect

Tanja Woyke from the DOE JGI on the "Genomic Sequencing of Single Bacterial Cells" on March 26, 2010 at the 5th Annual DOE JGI User Meeting

Woyke, Tanje

2010-03-26T23:59:59.000Z

249

Soybean Rust, A Rising Star in Phytopathology  

E-Print Network (OSTI)

by Christine Stone Genome Sequencing Project Funded by theUS DOE Joint Genome Institute Sequencing at JGI Library (DOE Joint Genome Institute Fosmid sequencing Random fosmids

Posada-Buitrago, Martha Lucia

2005-01-01T23:59:59.000Z

250

Roya de la Soja: Una Nueva Amenaza  

E-Print Network (OSTI)

USDA-ARS-ERRC ) GENOME SEQUENCING PROJECT PhakopsoraUS DOE Joint Genome Institute DNA sequencing process LibraryUS DOE Joint Genome Institute DNA sequencing process Rolling

Posada-Buitrago, Martha Lucia

2005-01-01T23:59:59.000Z

251

Diatom Genome Helps Explain Their Great Diversity and Success in Trapping  

NLE Websites -- All DOE Office Websites (Extended Search)

5, 2008 5, 2008 Diatom Genome Helps Explain Their Great Diversity and Success in Trapping Excess Carbon in Oceans WALNUT CREEK, CA-Diatoms, mighty microscopic algae, have profound influence on climate, producing 20 percent of the oxygen we breathe by capturing atmospheric carbon and in so doing, countering the greenhouse effect. Since their evolutionary origins these photosynthetic wonders have come to acquire advantageous genes from bacterial, animal and plant ancestors enabling them to thrive in today's oceans. These findings, based on the analysis of the latest sequenced diatom genome, Phaeodactylum tricornutum, are published in 15 October edition of the journal Nature by an international team of researchers led by the U.S. Department of Energy Joint Genome Institute (DOE JGI) and the Ecole Normale Supérieure of

252

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)  

SciTech Connect

Desulfotomaculum ruminis Campbell and Postgate 1965 is a member of the large genus Desulfotomaculum which contains 30 species and is contained in the family Peptococcaceae. This species is of interest because it represents one of the few sulfate- reducing bacteria that have been isolated from the rumen. Here we describe the features of D. ruminis together with the complete genome sequence and annotation. The 3,969,014 bp long chromosome with a total of 3,901 protein-coding and 85 RNA genes is the second completed genome sequence of a type strain of the genus Desulfotomaculum to be pub- lished, and was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program 2009.

Spring, Stefan [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Visser, Michael [Wageningen University and Research Centre, The Netherlands; Lu, Megan [Los Alamos National Laboratory (LANL); Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Larimer, Frank W [ORNL; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Schaap, Peter J [Wageningen University and Research Centre, The Netherlands; Plugge, Caroline M. [Wageningen University and Research Centre, The Netherlands; Muyzer, Gerard [Universitate Amsterdam; Kuever, Jan [Bremen Institute for Materials Testing, Bremen, Germany; Pereira, Ines A. C. [Universidade Nova de Lisboa, Oeiras, Portugal; Parshina, Sofiya N. [Russian Academy of Sciences, Moscow; Bernier-Latmani, Rizlan [Ecole Polytechnique Federale de Lausanne, Switzerland; Stams, Alfons J. M. [Wageningen University and Research Centre, The Netherlands; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

2012-01-01T23:59:59.000Z

253

NIST and The Materials Genome Initiative  

Science Conference Proceedings (OSTI)

... the Materials Genome Ini(a(ve formed (NIST, DOE, DOD, NSF, NASA, NIH, USGS, NNSA, DARPA, NSA, OMB) 6/12: MGI White House Kickoff Event ...

2013-07-02T23:59:59.000Z

254

DOE Hydrogen & Fuel Cell Overview  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE 2010 Waste To Energy Example Los Alamitos Joint Forces Training Base (JFTB) Urban Compost 25 tonday Gasifier & Cleanup Los Alamitos JFTB Fuel Cells 1,600 kW Resource...

255

Human Genome Research: Decoding DNA  

NLE Websites -- All DOE Office Websites (Extended Search)

Human Genome Research: Decoding DNA Human Genome Research: Decoding DNA Resources with Additional Information Charles DeLisi As head of DOE's Office of Health and Environmental Research, Charles DeLisi played a pivotal role in proposing and initiating the Human Genome Program in 1986. The U.S. Department of Energy (DOE) has historically been active in supporting human genome research. On September 10, 2003, Secretary of Energy Spencer Abraham presented the Secretary's Gold Award to Aristides Patrinos and Francis Collins for their leadership of the government's Human Genome Project. At DOE's Office of Science, Dr. Patrinos is the Associate Director for Biological and Environmental Research. He has been a researcher at the department's Oak Ridge National Laboratory and Brookhaven National Laboratory.

256

Joint Electrical Utilities (Iowa) | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Electrical Utilities (Iowa) Joint Electrical Utilities (Iowa) Joint Electrical Utilities (Iowa) < Back Eligibility Investor-Owned Utility Local Government Municipal/Public Utility Rural Electric Cooperative Tribal Government Utility Savings Category Alternative Fuel Vehicles Hydrogen & Fuel Cells Buying & Making Electricity Water Home Weatherization Solar Wind Program Info State Iowa Program Type Environmental Regulations Provider Iowa Utilities Board Cities may establish utilities to acquire existing electric generating facilities or distribution systems. Acquisition, in this statute, is defined as city involvement, and includes purchase, lease, construction, reconstruction, extension, remodeling, improvement, repair, and equipping of the facility. This chapter does not limit the powers or authority of

257

DOE Bioenergy Center Special Issue. The Bioenergy Sciences Center  

NLE Websites -- All DOE Office Websites (Extended Search)

Bioenergy Bioenergy Center Special Issue. The Bioenergy Sciences Center (BESC) Richard A. Dixon Published online: 22 October 2009 # Springer Science + Business Media, LLC. 2009 Keywords Bioenergy centers . United States Department of Energy . Biomass recalcitrance . High-throughput screening . Plant transformation This issue of BioEnergy Research is the first of three special issues to feature work from the US Department of Energy (DOE) Bioenergy Centers. In June 2006, the DOE's Genomes to Life Program published a report, entitled "Breaking the biological barriers to cellulosic ethanol: a joint research agenda," that outlined research areas requir- ing significant investment in order to meet the target of making cellulosic ethanol cost-competitive by 2012. Words were converted to action in June 2007 when Energy Secretary Samuel W. Bodman announced the establishment of

258

U.S.-Brazil Binational Joint Action Plan | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

U.S.-Brazil Binational Joint Action Plan U.S.-Brazil Binational Joint Action Plan U.S.-Brazil Binational Energy Working Group, formed on July 20, 2010, when DOE and the Brazilian...

259

Human genome. 1993 Program report  

SciTech Connect

The purpose of this report is to update the Human Genome 1991-92 Program Report and provide new information on the DOE genome program to researchers, program managers, other government agencies, and the interested public. This FY 1993 supplement includes abstracts of 60 new or renewed projects and listings of 112 continuing and 28 completed projects. These two reports, taken together, present the most complete published view of the DOE Human Genome Program through FY 1993. Research is progressing rapidly toward 15-year goals of mapping and sequencing the DNA of each of the 24 different human chromosomes.

Not Available

1994-03-01T23:59:59.000Z

260

Joint Announcement | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Announcement Joint Announcement Joint Announcement More Documents & Publications Comparing the Impacts of the 2005 and 2008 Hurricanes on U.S. Energy Infrastructure -...

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


261

PNNL: About PNNL - Joint Appointments  

NLE Websites -- All DOE Office Websites (Extended Search)

Yong Wang WSUPNNL Joint Appointee Yong Wang Named Fellow of American Chemical Society. Read the Full Article Joint Appointments The Joint Appointment Program is one means of...

262

Large displacement spherical joint  

DOE Patents (OSTI)

A new class of spherical joints has a very large accessible full cone angle, a property which is beneficial for a wide range of applications. Despite the large cone angles, these joints move freely without singularities.

Bieg, Lothar F. (Albuquerque, NM); Benavides, Gilbert L. (Albuquerque, NM)

2002-01-01T23:59:59.000Z

263

DOE-Funded Research Projects Win 46 R&D 100 Awards for 2009 ...  

Office of Science (SC) Website

analyzing process simulations with engineering data. (Jointly with DOE 's National Energy Technology Laboratory and Research Engineering International) Argonne National...

264

Seismic Capacity of Threaded, Brazed, and Grooved Pipe Joints  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

SEISMIC CAPACITY OF THREADED, BRAZED AND GROOVED PIPE JOINTS Brent Gutierrez, PhD, PE George Antaki, PE, F.ASME DOE NPH Conference October 25-26, 2011 Motivation * Understand the...

265

Complete genome sequence of Tolumonas auensis type strain (TA 4T)  

Science Conference Proceedings (OSTI)

Tolumonas auensis Fischer-Romero et al. 1996 is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Oth- er than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4T is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292 bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008.

Chertkov, Olga [Los Alamos National Laboratory (LANL); Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Berry, Alison M [California Institute of Technology, University of California, Davis; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Spring, Stefan [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Beller, Harry R. [Lawrence Berkeley National Laboratory (LBNL); Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2011-01-01T23:59:59.000Z

266

Complete genome sequence of Tolumonas auensis type strain (TA 4T)  

Science Conference Proceedings (OSTI)

Tolumonas auensis (Fischer-Romero et al. 1996) is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Other than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4T is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292-bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008.

Chertkov, Olga; Copeland, Alex; Lucas1, Susa; Lapidus, Alla; Berry, KerrieW.; Detter, JohnC.; Glavina Del Rio, Tijana; Hammon, Nancy; Dalin, Eileen; Tice, Hope; Pitluck, Sam; Richardson, Paul; Bruce, David; Goodwin, Lynne; Han, Cliff; Tapia, Roxanne; Saunders, Elizabeth; Schmutz, Jeremy; Brettin, Thomas; Larimer, Frank; Land, Miriam; Hauser, Loren; Spring, Stefan; Rohde, Manfred; Kyrpides, NikosC.; Ivanova, Natalia; Göker, Markus; Beller, HarryR.; Klenk, Hans-Peter; Woyke, Tanja

2011-10-04T23:59:59.000Z

267

A Joint Theory and Experimental Project in the Synthesis and Testing of Porous COFs for Onboard Vehicular Hydrogen Storage - DOE Hydrogen and Fuel Cells Program FY 2012 Annual Progress Report  

NLE Websites -- All DOE Office Websites (Extended Search)

7 7 FY 2012 Annual Progress Report DOE Hydrogen and Fuel Cells Program Omar M. Yaghi Department of Chemistry and Biochemistry University of California - Los Angeles 607 Charles E. Young Drive East Los Angeles, CA 90095 Phone: (310) 206-0398 Email: yaghi@chem.ucla.edu DOE Managers HQ: Ned Stetson Phone: (202) 586-9995 Email: Ned.Stetson@ee.doe.gov GO: Katie Randolph Phone: (720) 356-1759 Email: Katie.Randolph@go.doe.gov Contract Number: DE-FG36-08GO18141 Project Start Date: September 1, 2008 Project End Date: July 31, 2012 Fiscal Year (FY) 2012 Objectives Design optimal frameworks with potential metal binding * sites for metal impregnation. Predict H * 2 uptake isotherm for designed frameworks using our newly developed force field.

268

U.S.-Sweden Joint PHEV Research  

NLE Websites -- All DOE Office Websites (Extended Search)

to jointly develop new plug-in to jointly develop new plug-in hybrid vehicle (PHEV) technology and accelerate its consumer acceptance and commercialization, the U.S. Department of Energy (DOE) and Sweden signed a Memorandum of Understanding (MOU) in July for a one year, $1 million cost-sharing agreement to be equally funded by DOE and the Swedish Energy Agency. Through contacts developed over many years conducting international technology assessment for the Department of Energy, Argonne National Laboratory initiated the MOU, which was signed by DOE Assistant Secretary Alexander Karsner and Director General of the Swedish Energy Agency Tomas KĂĄberger, on the Swedish island of Gotland. The ceremony included comments by Swedish Deputy Prime Minister Maud Olofsson and U.S. Ambassador to Sweden Michael

269

Weather and Joints  

NLE Websites -- All DOE Office Websites (Extended Search)

Humidity and air pressure changes, which accompany changes in weather, can sometimes be felt in the human body, some people are affected more than others. Arthritis in joints...

270

Joint Environmental Management System (EMS) | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Environmental Management System (EMS) Joint Environmental Management System (EMS) Joint Environmental Management System (EMS) Joint Environmental Management System (EMS) The environmental management system (EMS) has two areas of focus: environmental compliance and environmental sustainability. The environmental compliance aspect of the EMS consists of regulatory compliance and monitoring programs that implement federal, state, local, and tribal requirements; agreements; and permits under the Legacy Management contract. The environmental sustainability aspect promotes and integrates sustainability initiatives such as energy and natural resource conservation, waste minimization, green construction, and use of eco-friendly products and services into all phases of work. U.S. Department of Energy (DOE) Office of Legacy Management (LM) EMS was

271

DOE JGI CSP 2012 PI Workshop  

NLE Websites -- All DOE Office Websites (Extended Search)

Organizers Organizers Workshop Organizers Nikos Kyrpides Prokaryotic Superprogram Lead, DOE JGI Susannah Tringe Metagenomics Program Lead, DOE JGI Tanja Woyke Microbial Genomics Program Lead, DOE JGI Igor Grigoriev Fungal Genomics Program Lead, DOE JGI Participants Heike Bucking, South Dakota State University Jeff Dangl, University of North Carolina Chapel Hill Kristen DeAngelis, University of Massachusetts University of Massachusetts, University of British Columbia Jorge Rodrigues, University of Texas Louis Tisa, University of New Hampshire Christopher Schadt, ORNL Jerry Tuskan, ORNL Eoin Brodie, LBNL Brendan Bohannan, University of Oregon Angela Kent, University of Illinois Urbana-Champaign James Tiedje, Michigan State University Nikos Kyrpides, DOE JGI Susannah Tringe, DOE JGI

272

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations  

Science Conference Proceedings (OSTI)

Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006.

Bollmann, Annette [Miami University, Oxford, OH; Sedlacek, Christopher J [Miami University, Oxford, OH; Laanbroek, Hendrikus J [Netherlands Institute of Ecology (NIOO-KNAW); Suwa, Yuichi [Chuo University, Tokyo, Japan; Stein, Lisa Y [University of California, Riverside; Klotz, Martin G [University of Louisville, Louisville; Arp, D J [Oregon State University; Sayavedra-Soto, LA [Oregon State University; Lu, Megan [Los Alamos National Laboratory (LANL); Bruce, David [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Tapia, Roxanne [Los Alamos National Laboratory (LANL); Han, James [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Pennacchio, Len [U.S. Department of Energy, Joint Genome Institute; Nolan, Matt [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Huntemann, Marcel [U.S. Department of Energy, Joint Genome Institute; Deshpande, Shweta [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Chen, Amy [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Mavromatis, K [U.S. Department of Energy, Joint Genome Institute; Markowitz, Victor [U.S. Department of Energy, Joint Genome Institute; Szeto, Ernest [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL)

2013-01-01T23:59:59.000Z

273

Human Genome Program Image Gallery (from genomics.energy.gov)  

DOE Data Explorer (OSTI)

This collection contains approximately 240 images from the genome programs of DOE's Office of Science. The images are divided into galleries related to biofuels research, systems biology, and basic genomics. Each image has a title, a basic citation, and a credit or source. Most of the images are original graphics created by the Genome Management Information System (GMIS). GMIS images are recognizable by their credit line. Permission to use these graphics is not needed, but please credit the U.S. Department of Energy Genome Programs and provide the website http://genomics.energy.gov. Other images were provided by third parties and not created by the U.S. Department of Energy. Users must contact the person listed in the credit line before using those images. The high-resolution images can be downloaded.

274

Articular human joint modelling  

Science Conference Proceedings (OSTI)

The work reported in this paper encapsulates the theories and algorithms developed to drive the core analysis modules of the software which has been developed to model a musculoskeletal structure of anatomic joints. Due to local bone surface and contact ... Keywords: 6DOF, Joint Modelling, Software, Tissue wrapping, bilateral, constraints, forced contact based articulation, unilateral

Ibrahim i. Esat; Neviman Ozada

2010-03-01T23:59:59.000Z

275

Comments of the Joint Center for Political and Economic Studies |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Center for Political and Economic Studies Joint Center for Political and Economic Studies Comments of the Joint Center for Political and Economic Studies The Media and Technology Institute and the Climate Change Initiative at the Joint Center for Political and Economic Studies ("Joint Center")1 respectfully submit these comments in response to the United States Department of Energy's ("DoE") Request for Information regarding its implementation of the Smart Grid provisions of Federal Communications Commission's ("FCC") National Broadband Plan. Comments of the Joint Center for Political and Economic Studies More Documents & Publications Re: NBP RFI: Data Access Implementing the National Broadband Plan by Empowering Consumers and the Smart Grid: Data Access, Third Party Use, and Privacy- Request for

276

The Annual DOE JGI User Meeting  

NLE Websites -- All DOE Office Websites (Extended Search)

Genomics of Energy & Environment Genomics of Energy & Environment The annual DOE JGI User Meeting March 18 - 20, 2014 in Walnut Creek, California Register now for the Meeting and Workshops Register Topics include: Microbial genomics, fungal genomics, metagenomics, and plant genomics; genome editing, natural products, pathway engineering, synthetic biology, high-throughput functional genomics, and societal impact of technological advances. State-of-the-art presentations by invited speakers as well as short talks selected from poster abstracts. In addition, tutorials on genomic informatics, data management, and new genomic technologies. Keynotes: Annalee Newitz, io9 Steve Quake, Stanford University Other confirmed speakers: Martin Ackermann, ETH Zurich Luke Alphey, Oxitec Mary Berbee, University of British Columbia

277

JM to Make Admin Chg to DOE O 205.1B, Department of Energy Cyber Security Program  

Directives, Delegations, and Requirements

Modifications correct changes to the composition of Senior DOE Management organizations, name change from DOE Cyber Incident Response Capability to Joint ...

2012-12-06T23:59:59.000Z

278

Agenda, DOE Environmental Sustainability Network (ESN), Monthly...  

NLE Websites -- All DOE Office Websites (Extended Search)

AGENDA DOE Joint ESN and EMSAN Monthly Conference Call Thursday, June 17, 2010 11:00 - 12:30 Eastern Call-in Number: (202) 287-5318 11:00 - 11:05 Welcome & Attendance Beverly...

279

Agenda, DOE Environmental Sustainability Network (ESN), Monthly...  

NLE Websites -- All DOE Office Websites (Extended Search)

AGENDA DOE Joint ESN and EMSAN Monthly Conference Call Thursday, March 18, 2010 11:00 - 12:30 Eastern Forrestal Room 8E-090 Call-in Number: (301) 903- 0117 11:00 - 11:05 Welcome &...

280

Agenda, DOE Environmental Sustainability Network (ESN), Monthly...  

NLE Websites -- All DOE Office Websites (Extended Search)

AGENDA DOE Joint ESN and EMSAN Monthly Conference Call Thursday, April 15, 2010 11:00 - 12:30 Eastern Call-in Number: (301) 903- 0117 11:00 - 11:05 Welcome & Attendance Beverly...

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


281

Agenda, DOE Environmental Sustainability Network (ESN), Monthly...  

NLE Websites -- All DOE Office Websites (Extended Search)

AGENDA DOE Joint ESN and EMSAN Monthly Conference Call Thursday, July 15, 2010 11:00 - 12:30 Eastern Call-in Number: (202) 287-5320 11:00 - 11:05 Welcome & Attendance Jerry...

282

Agenda, DOE Environmental Sustainability Network (ESN), Monthly...  

NLE Websites -- All DOE Office Websites (Extended Search)

AGENDA DOE Joint ESN and EMSAN Monthly Conference Call Thursday, May 20, 2010 11:00 - 12:30 Eastern Call-in Number: (301) 903- 7073 11:00 - 11:05 Welcome & Attendance Beverly...

283

Genomic Science Program Systems Biology for Energy and Environment  

NLE Websites -- All DOE Office Websites (Extended Search)

Major KBase Public Release Now Available 0213 More News and Announcements Reports DOE JGI Strategic Planning for the Genomic Sciences: Workshop Report 912 Plants and...

284

DOE JGI Microbial Genomics & Metagenomics Workshops  

NLE Websites -- All DOE Office Websites (Extended Search)

next generation sequencing platforms. Therefore, assembly is a common step in analysis pipelines, since it can increase sequence length and reduce complexity via clustering....

285

DOE JGI Microbial Genome Reannotation Workshop  

NLE Websites -- All DOE Office Websites (Extended Search)

approach In each step below we will be discussing: Alternative methods used Proposed pipeline Implementation of confidence levels for feature prediction Benchmarking (when needed)...

286

DOE JGI Announces 2008 Genome Sequencing Targets  

NLE Websites -- All DOE Office Websites (Extended Search)

It is envisioned that pearl millet would be useful as a supplement or replacement for corn in ethanol plants in regions that suffer from drought and low-fertility soils. The...

287

DOE JGI Microbial Genomics & Metagenomics Workshops  

NLE Websites -- All DOE Office Websites (Extended Search)

Logistics What to Bring LAPTOP COMPUTERS REQUIRED Please plan to bring your own laptop to the JGI in order to participate in the Workshop. Details regarding system requirements...

288

DOE JGI Microbial Genome Reannotation Workshop  

NLE Websites -- All DOE Office Websites (Extended Search)

Logistics What to Bring LAPTOP COMPUTERS REQUIRED Please plan to bring your own laptop to the JGI in order to participate in the Workshop. Details regarding system requirements...

289

JOINT ELECTRICAL & COMPUTER ENGINEERING AND  

E-Print Network (OSTI)

JOINT ELECTRICAL & COMPUTER ENGINEERING AND PHYSICS COLLOQUIUM "Speckle Statistics, Coherence confirmation of the increase in the well- defined polarization state of the output radiation. In the joint

290

Joint Institutes | ornl.gov  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Institutes SHARE Joint Institutes ORNL, in partnership with the Science Alliance of the University of Tennessee, Knoxville, has a number of cooperative ventures in science...

291

Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T)  

Science Conference Proceedings (OSTI)

Saccharomonospora azurea Runmao et al. 1987 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonosoras are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist and over-heated grain, where they might play a role in the primary degradation of plant material by attacking hemicellulose. They are Gram-negative staining organisms classified among the usually Gram-positive actinomycetes. Next to S. viridis, S. azurea is only the second member in the genus Saccharomonospora for with a completely sequenced type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence with project status 'permanent draft', and annotation. The 4,763,832 bp long chromosome with its 4,472 protein-coding and 58 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Held, Brittany [Los Alamos National Laboratory (LANL); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Brambilla, Evelyne-Marie [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

292

Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)  

SciTech Connect

Saccharomonospora marina Liu et al. 2010 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive staining, non-acid fast, and classify among the actinomycetes. Next to S. viridis and S. azurea, S. marina is the third member in the genus Saccharomonospora for with a completely sequenced (permanent draft status) type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Lu, Megan [Los Alamos National Laboratory (LANL); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Brambilla, Evelyne-Marie [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Li, Wen-Jun [Yunnan University, Kunming, China; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

293

Handbook on dynamics of jointed structures.  

Science Conference Proceedings (OSTI)

The problem of understanding and modeling the complicated physics underlying the action and response of the interfaces in typical structures under dynamic loading conditions has occupied researchers for many decades. This handbook presents an integrated approach to the goal of dynamic modeling of typical jointed structures, beginning with a mathematical assessment of experimental or simulation data, development of constitutive models to account for load histories to deformation, establishment of kinematic models coupling to the continuum models, and application of finite element analysis leading to dynamic structural simulation. In addition, formulations are discussed to mitigate the very short simulation time steps that appear to be required in numerical simulation for problems such as this. This handbook satisfies the commitment to DOE that Sandia will develop the technical content and write a Joints Handbook. The content will include: (1) Methods for characterizing the nonlinear stiffness and energy dissipation for typical joints used in mechanical systems and components. (2) The methodology will include practical guidance on experiments, and reduced order models that can be used to characterize joint behavior. (3) Examples for typical bolted and screw joints will be provided.

Ames, Nicoli M.; Lauffer, James P.; Jew, Michael D.; Segalman, Daniel Joseph; Gregory, Danny Lynn; Starr, Michael James; Resor, Brian Ray

2009-07-01T23:59:59.000Z

294

High pressure ceramic joint  

DOE Patents (OSTI)

Many recuperators have components which react to corrosive gases and are used in applications where the donor fluid includes highly corrosive gases. These recuperators have suffered reduced life, increased service or maintenance, and resulted in increased cost. The present joint when used with recuperators increases the use of ceramic components which do not react to highly corrosive gases. Thus, the present joint used with the present recuperator increases the life, reduces the service and maintenance, and reduces the increased cost associated with corrosive action of components used to manufacture recuperators. The present joint is comprised of a first ceramic member, a second ceramic member, a mechanical locking device having a groove defined in one of the first ceramic member and the second ceramic member. The joint and the mechanical locking device is further comprised of a refractory material disposed in the groove and contacting the first ceramic member and the second ceramic member. The present joint mechanically provides a high strength load bearing joint having good thermal cycling characteristics, good resistance to a corrosive environment and good steady state strength at elevated temperatures.

Ward, Michael E. (Poway, CA); Harkins, Bruce D. (San Diego, CA)

1993-01-01T23:59:59.000Z

295

High pressure ceramic joint  

DOE Patents (OSTI)

Many recuperators have components which react to corrosive gases and are used in applications where the donor fluid includes highly corrosive gases. These recuperators have suffered reduced life, increased service or maintenance, and resulted in increased cost. The present joint when used with recuperators increases the use of ceramic components which do not react to highly corrosive gases. Thus, the present joint used with the present recuperator increases the life, reduces the service and maintenance, and reduces the increased cost associated with corrosive action of components used to manufacture recuperators. The present joint is comprised of a first ceramic member, a second ceramic member, a mechanical locking device having a groove defined in one of the first ceramic member and the second ceramic member. The joint and the mechanical locking device is further comprised of a refractory material disposed in the groove and contacting the first ceramic member and the second ceramic member. The present joint mechanically provides a high strength load bearing joint having good thermal cycling characteristics, good resistance to a corrosive environment and good steady state strength at elevated temperatures. 4 figures.

Ward, M.E.; Harkins, B.D.

1993-11-30T23:59:59.000Z

296

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea  

E-Print Network (OSTI)

co-occurring archaea. BMC Genomics 2013 14:485. Submit yourgenomes. Yelton et al. BMC Genomics 2013, 14:485 http://work was supported by DOE Genomics: GTL project Grant No.

2013-01-01T23:59:59.000Z

297

Genomic Advances to Improve Biomass for Biofuels (LBNL Science at the Theater)  

DOE Green Energy (OSTI)

Lawrence Berkeley National Lab bioscientist Daniel Rokhsar discusses genomic advances to improve biomass for biofuels. He presented his talk Feb. 11, 2008 in Berkeley, California as part of Berkeley Lab's community lecture series. Rokhsar works with the U.S. Department of Energy's Joint Genome Institute and Berkeley Lab's Genomics Division.

Rokhsar, Daniel

2008-02-11T23:59:59.000Z

298

Genome Improvement at JGI-HAGSC  

Science Conference Proceedings (OSTI)

Since the completion of the sequencing of the human genome, the JGI has rapidly expanded its scientific goals in several DOE mission-relevant areas. At the JGI-HAGSC, we have kept pace with this rapid expansion of projects with our focus on assessing, assembling, improving and finishing eukaryotic whole genome shotgun (WGS) projects for which the shotgun sequence is generated at the Production Genomic Facility (JGI-PGF). We follow this by combining the draft WGS with genomic resources generated at JGI-HAGSC or in collaborator laboratories (including BAC end sequences, genetic maps and FLcDNA sequences) to produce an improved draft sequence. For eukaryotic genomes important to the DOE mission, we then add further information from directed experiments to produce reference genomic sequences that are publicly available for any scientific researcher. Also, we have continued our program for producing BAC-based finished sequence, both for adding information to JGI genome projects and for small BAC-based sequencing projects proposed through any of the JGI sequencing programs. We have now built our computational expertise in WGS assembly and analysis and have moved eukaryotic genome assembly from the JGI-PGF to JGI-HAGSC. We have concentrated our assembly development work on large plant genomes and complex fungal and algal genomes.

Grimwood, Jane: Schmutz, Jeremy, J.: Myers, Richard, M.

2012-03-03T23:59:59.000Z

299

Joint Outreach Task Group Former Workers Screening Program | Department of  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Joint Outreach Task Group Former Workers Screening Program Joint Outreach Task Group Former Workers Screening Program The Joint Outreach Task Group (JOTG) includes representatives from HSS, Department of Labor (DOL), the National Institute for Occupational Safety and Health (NIOSH), the Offices of the Ombudsman for DOL and NIOSH, and the DOE-funded FWP projects. The JOTG was established in 2009 under the premise that agencies/programs with common goals can work together by combining resources and coordinating outreach efforts. Each involved agency has a different mission, but the missions are complementary. By working together, the agencies are better able to serve the DOE workforce. The JOTG focuses on educating the former workers on the programs and resources available to them.

300

Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park  

DOE Green Energy (OSTI)

Paenibacillus speciesY412MC10 was one of a number of organisms initially isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA. The isolate Y412MC10 was initially classified as a Geobacillus sp. based on its isolation conditions and similarity to other organisms isolated from hot springs at Yellowstone National Park. Comparison of 16 S rRNA sequences within the Bacillales indicated that Geobacillus sp.Y412MC10 clustered with Paenibacillus species and not Geobacillus; the 16S rRNA analysis indicated the organism was a strain of Paenibacillus lautus. Lucigen Corp. prepared genomic DNA and the genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute. The genome of Paenibacillus lautus strain Y412MC10 consists of one circular chromosome of 7,121,665 bp with an average G+C content of 51.2%. The Paenibacillus sp.Y412MC10 genome sequence was deposited at the NCBI in October 2009 (NC{_}013406). Comparison to other Paenibacillus species shows the organism lacks nitrogen fixation, antibiotic production and social interaction genes reported in other Paenibacilli. Over 25% of the proteins predicted by the Y412MC10 genome share no identity with the closest sequenced Paenibacillus species; most of these are predicted hypothetical proteins and their specific function in the environment is unknown.

Mead, David [University of Wisconsin, Madison; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Chertkov, Olga [Los Alamos National Laboratory (LANL); Zhang, Xiaojing [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Chang, Yun-Juan [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Brumm, Catherine [United States Department of Energy Joint Genome Institute; Hochstein, Rebecca [Lucigen Corporation, Middleton, Wisconsin; Schoenfeld, Thomas [Lucigen Corporation, Middleton, Wisconsin; Brumm, Phillip [University of Wisconsin, Madison

2012-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


301

Seismic Capacity of Threaded, Brazed, and Grooved Pipe Joints  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

SEISMIC CAPACITY OF THREADED, SEISMIC CAPACITY OF THREADED, BRAZED AND GROOVED PIPE JOINTS Brent Gutierrez, PhD, PE George Antaki, PE, F.ASME DOE NPH Conference October 25-26, 2011 Motivation * Understand the behavior and failure mode of common joints under extreme lateral loads * Static and shake table tests conducted of pressurized - Threaded, - Brazed, - Mechanical joints Static Testing o Pressurized spool to 150 psi o Steady downward force applied while recording deflections o Grooved clamped mech. joints * 16 tests performed o Threaded joints * 4 tests o Brazed (copper) * 4 tests Grooved Couplings o Catalog items o ASTM A106 Grade B piping o ASTM A 536 couplings o Lateral deflections imposed well above manufacturer's angular installation tolerance

302

Senior International Energy Officials Issue Joint Statement in Support of  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Senior International Energy Officials Issue Joint Statement in Senior International Energy Officials Issue Joint Statement in Support of the Global Nuclear Energy Partnership Senior International Energy Officials Issue Joint Statement in Support of the Global Nuclear Energy Partnership May 21, 2007 - 12:55pm Addthis WASHINGTON, DC - U.S. Secretary of Energy Samuel W. Bodman today announced that the U.S. Department of Energy (DOE) and senior energy officials from some of the world's leading economies issued a joint statement in support of the Global Nuclear Energy Partnership (GNEP) and nuclear energy cooperation. The People's Republic of China, France, Japan, Russia and the United States issued the Joint Statement, which addresses the prospects for international cooperation in peaceful uses of nuclear energy, including

303

United States and Czech Republic Establish a Joint Civil Nuclear  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Establish a Joint Civil Nuclear Establish a Joint Civil Nuclear Cooperation Center in Prague United States and Czech Republic Establish a Joint Civil Nuclear Cooperation Center in Prague June 12, 2013 - 12:17pm Addthis News Media Contact (202) 586-4940 PRAGUE, Czech Republic - The U.S. Department of Energy (DOE) recently joined with the U.S. Embassy in Prague and the Czech Republic's Ministry of Education, Youth and Sports to sign an agreement that establishes a joint Civil Nuclear Cooperation Center in Prague. The creation of this Center is another valued step in expanding U.S.-Czech energy collaboration and fulfills the commitment made by President Obama and Czech Prime Minister NeÄŤas in October 2011 to establish such a Center to facilitate and coordinate joint activities and support regional initiatives in the

304

Microbial Genomics  

NLE Websites -- All DOE Office Websites (Extended Search)

Teaching Tools Fun Facts Images Microbial Primer search Disclaimer Contact Us Awards Site Statistics The U.S. Department of Energy (DOE) Office of Science supports innovative,...

305

Molluscan Evolutionary Genomics  

E-Print Network (OSTI)

Today’s high-throughput genome sequencing centers lack thecomplete nuclear genome sequencing, with several mollusksparticipation. The cost of genome sequencing is still very

Simison, W. Brian

2010-01-01T23:59:59.000Z

306

JGI Fungal Genomics Program  

E-Print Network (OSTI)

JGI Fungal Genomics Program Igor V. Grigoriev 1 Lawrenceof California. JGI Fungal Genomics Program Contact: IgorJGI). Its key project, the Genomics Encyclopedia of Fungi,

Grigoriev, Igor V.

2012-01-01T23:59:59.000Z

307

Joint Theory Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

Program General Info Program General Info Registration Info Directions to Argonne Dynamics of Symmetry Breaking A Workshop sponsored by the ANL/UChicago Joint Theory Institute April 13-17, 2009 Argonne National Laboratory, IL The Joint Theory Institute (JTI) is a multi-disciplinary research institution jointly supported at the University of Chicago and Argonne National Laboratory to enhance collaborative research between both institutions in the broad area of theory. This year JTI sponsors a workshop the aim of which is to explore the dynamics of symmetry breaking in a broad range of systems from nuclear physics to string theory, using theoretical insights such as Dyson-Schwinger equations formalism, gauge/gravity duality and lattice QCD. We will focus on systems which exhibit dynamical symmetry breaking and will cover topics essential for understanding nonperturbative QCD and physics of quark-gluon plasma.

308

Feature - U.S.-Sweden Joint PHEV Research  

NLE Websites -- All DOE Office Websites (Extended Search)

U.S.-Sweden Joint PHEV Research U.S.-Sweden Joint PHEV Research How the Smart Charge System Works How the Smart Charge System Works Looking to jointly develop new plug-in hybrid vehicle (PHEV) technology and accelerate its consumer acceptance and commercialization, the U.S. Department of Energy (DOE) and Sweden signed a Memorandum of Understanding (MOU) in July for a one year, $1 million cost-sharing agreement to be equally funded by DOE and the Swedish Energy Agency. Through contacts developed over many years conducting international technology assessment for the Department of Energy, Argonne National Laboratory initiated the MOU, which was signed by DOE Assistant Secretary Alexander Karsner and Director General of the Swedish Energy Agency Tomas KĂĄberger, on the Swedish island of Gotland. The ceremony included comments

309

Major DOE Biofuels Project Locations  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Biofuels Project Locations Biofuels Project Locations BlueFire Ethanol Biochemical Municipal Solid Waste (Mecca, CA) Poet Biochemical Corn Cob/Corn Fiber (Emmetsburg, IA) Lignol Biochemical Woody Biomass- Ag Residues (Grand Junction, CO) ICM Biochemical Switchgrass, Forage Sorghum, Stover (St. Joseph, MO) Abengoa Biochemica Agricultural Residue (Hugoton, KS) DOE Joint Bioenergy Institute (Berkeley, CA) DOE Great Lakes Bioenergy Research Center (Madison, WI) DOE Bioenergy Science Center (Oak Ridge, TN) NewPage Thermochemical Woody Biomass - Mill Residues (Wisconsin Rapids, WI) Range Fuels Thermochemical Woody Waste (Soperton, GA) DSM Innovation Center Biochemical Various (Parsippany, NJ) Novozymes Biochemical Various (Davis, CA) Genencor Biochemical Various (Palo Alto, CA) Verenium Corp Biochemical Various (San Diego, CA)

310

Microsoft PowerPoint - Microbial Genome and Metagenome Analysis Case Study (NERSC Workshop - May 7-8, 2009).ppt [Compatibility  

NLE Websites -- All DOE Office Websites (Extended Search)

Genome & Genome & Metagenome Analysis: Computational Challenges Natalia N. Ivanova * Nikos C. Kyrpides * Victor M. Markowitz ** * Genome Biology Program, Joint Genome Institute ** Lawrence Berkeley National Lab Microbial genome & metagenome analysis General aims Understand microbial life Apply to agriculture, bioremediation, biofuels, human health Specific aims include Specific aims include Predict biochemistry & physiology of organisms based on genome sequence Explain known biochemical & physiological properties Metabolic reconstruction * Ivanova & Lykidis (2009) Metabolic reconstruction. Encyclopedia of Microbiology, Elsevier: 607-621. 2 Genome sequence data size Now ~1,400 microbial genomes = 5.5 mil genes ~ 100 metagenomes samples

311

The human genome initiative of the Department of Energy  

DOE Green Energy (OSTI)

The structural characterization of genes and elucidation of their encoded functions have become a cornerstone of modern health research, biology and biotechnology. A genome program is an organized effort to locate and identify the functions of all the genes of an organism. Beginning with the DOE-sponsored, 1986 human genome workshop at Santa Fe, the value of broadly organized efforts supporting total genome characterization became a subject of intensive study. There is now national recognition that benefits will rapidly accrue from an effective scientific infrastructure for total genome research. In the US genome research is now receiving dedicated funds. Several other nations are implementing genome programs. Supportive infrastructure is being improved through both national and international cooperation. The Human Genome Initiative of the Department of Energy (DOE) is a focused program of Resource and Technology Development, with objectives of speeding and bringing economies to the national human genome effort. This report relates the origins and progress of the Initiative. 34 refs.

none,

1988-01-01T23:59:59.000Z

312

Weather and Joints  

NLE Websites -- All DOE Office Websites (Extended Search)

Weather and Joints Weather and Joints Name: Brittany Location: N/A Country: N/A Date: N/A Question: Why do people feel the weather changin in their joints? Is it just a superstition? Replies: People feel weather changes in their bodies because storm systems are accompanied by lower air pressure. When a storm system is approaching the barometric pressure or air pressure will drop. Inside the body is air pressure also. The pressure inside the body is approximately 15 lbs per square inch. Normal air pressure on the outside is approximately the same. When both numbers are equal most people don't feel anything. However, when the low pressure system approaches or the air pressure drops, the pressure on the inside of the body is greater than outside and that air on the inside tries to get out because air flows from high pressure to low pressure. This causes swelling and discomfort in some people's joints, especially in the elderly or people who have suffered injuries to those areas (those areas are weakened somewhat due to the injury and less resistant to the changes in pressure).

313

JIBS | Joint Institute for Biological Sciences | ORNL  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Institute for Biological Sciences SHARE Joint Institute for Biological Sciences The Joint Institute of ORNL and the University of Tennessee has a single mission: to enable...

314

Complete genome sequence of Methanoculleus marisnigri type strain JR1  

SciTech Connect

Methanoculleus marisnigri Romesser et al. 1981 is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain, JR1, was isolated from anoxic sediments of the Black Sea. M. marisnigri is of phylogenetic interest because at the time the sequencing project began only one genome had previously been sequenced from the order Methanomicrobiales. We report here the complete genome sequence of M. marisnigri type strain JR1 and its annotation. This is part of a Joint Genome Institute 2006 Community Sequencing Program to sequence genomes of diverse Archaea.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Sieprawska-Lupa, Magdalena [University of Georgia, Athens, GA; Goltsman, Eugene [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Barry, Kerrie [U.S. Department of Energy, Joint Genome Institute; Saunders, Elizabeth H [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Brettin, Tom [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Hauser, Loren John [ORNL; Land, Miriam L [ORNL; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Whitman, W. B. [University of Georgia, Athens, GA; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute

2009-01-01T23:59:59.000Z

315

Complete genome sequence of Methanocorpusculum labreanum type strain Z  

Science Conference Proceedings (OSTI)

Methanocorpusculum labreanum is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain Z was isolated from surface sediments of Tar Pit Lake in the La Brea Tar Pits in Los Angeles, California. M. labreanum is of phylogenetic interest because at the time the sequencing project began only one genome had previously been sequenced from the order Methanomicrobiales. We report here the complete genome sequence of M. labreanum type strain Z and its annotation. This is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Sieprawska-Lupa, Magdalena [University of Georgia, Athens, GA; Goltsman, Eugene [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Barry, Kerrie [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Hauser, Loren John [ORNL; Land, Miriam L [ORNL; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Whitman, W. B. [University of Georgia, Athens, GA; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute

2009-01-01T23:59:59.000Z

316

Rolling contact orthopaedic joint design  

E-Print Network (OSTI)

Arthroplasty, the practice of rebuilding diseased biological joints using engineering materials, is often used to treat severe arthritis of the knee and hip. Prosthetic joints have been created in a "biomimetic" manner to ...

Slocum, Alexander Henry, Jr

2013-01-01T23:59:59.000Z

317

Double slotted socket spherical joint  

DOE Patents (OSTI)

A new class of spherical joints is disclosed. These spherical joints are capable of extremely large angular displacements (full cone angles in excess of 270.degree.), while exhibiting no singularities or dead spots in their range of motion. These joints can improve or simplify a wide range of mechanical devices.

Bieg, Lothar F. (Albuquerque, NM); Benavides, Gilbert L. (Albuquerque, NM)

2001-05-22T23:59:59.000Z

318

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

processes, and alternative energy production. Faster andin the areas of alternative energy production, car- bonsequestration, and alternative energy production. invaluable

Gilbert, David

2005-01-01T23:59:59.000Z

319

Rooted in Wonder: Joint Genome Institute Study Reveals Amazing...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

better understanding of the microbes that affect the growth of other plants (crops like corn or wheat) researchers may be able to improve their growth -- or provide better care for...

320

U.S. Department of Energy Joint Genome Institute  

NLE Websites -- All DOE Office Websites (Extended Search)

areas indicate regions with more chlorophyll, while the blue regions designate xylem tissues involved in transporting water and nutrients. (Image by BESC researcher Shi-You...

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


321

Joint Genome Institute Progress Report 2002-2005  

E-Print Network (OSTI)

APPENDIX B: 2005 & 2006 CSP DNA Sequencing Projects cont.+ Appendix B: 2005 and 2006 CSP DNA Sequencing Projects + +Community Sequencing Program (CSP) Traditionally, beyond its

Gilbert, David

2005-01-01T23:59:59.000Z

322

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)  

SciTech Connect

Starkeya novella (Starkey 1934) Kelly et al. 2000 is a member of the family Xanthobacteraceae in the order Rhizobiales , which is thus far poorly characterized at the genome level. Cultures from this spe- cies are most interesting due to their facultatively chemolithoautotrophic lifestyle, which allows them to both consume carbon dioxide and to produce it. This feature makes S. novella an interesting model or- ganism for studying the genomic basis of regulatory networks required for the switch between con- sumption and production of carbon dioxide, a key component of the global carbon cycle. In addition, S. novella is of interest for its ability to grow on various inorganic sulfur compounds and several C1- compounds such as methanol. Besides Azorhizobium caulinodans, S. novella is only the second spe- cies in the family Xanthobacteraceae with a completely sequenced genome of a type strain. The cur- rent taxonomic classification of this group is in significant conflict with the 16S rRNA data. The ge- nomic data indicate that the physiological capabilities of the organism might have been underestimat- ed. The 4,765,023 bp long chromosome with its 4,511 protein-coding and 52 RNA genes was se- quenced as part of the DOE Joint Genome Institute Community Sequencing Program (CSP) 2008.

Kappler, Ulrike [University of Queensland, The, Brisbane, Queensland, Australia; Davenport, Karen W. [Los Alamos National Laboratory (LANL); Beatson, Scott [University of Queensland, The, Brisbane, Queensland, Australia; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Berry, Kerrie W. [U.S. Department of Energy, Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Chang, Yun-Juan [ORNL; Jeffries, Cynthia [Oak Ridge National Laboratory (ORNL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

323

DOE Online  

NLE Websites -- All DOE Office Websites (Extended Search)

Fermilab's Science Adventures! Fermilab's Science Adventures! DOE Online K-12 Instructional Resources ed.fnal.gov/doe/ The U.S. Department of Energy is committed to helping educate our nation's next generation of scientists. The following resources help teachers integrate the Internet into K-12 classroom instruction. DOE Labs General Instructional Units Online Resources Lesson Plans General References DOE Laboratory and Facility Education Home Pages (www-ed.fnal.gov/doe/doe_labs.html) Direct links for 27 education Websites at DOE national laboratories and facilities. Online Catalog (www-ed.fnal.gov/trc/library) Fermilab's Teacher Resource Center collection of 10,000+ PreK-12 instructional materials in science, mathematics and technology. Materials include tradebooks, curriculum materials, educational

324

Using Partial Genomic Fosmid Libraries for Sequencing Complete Organellar Genomes  

E-Print Network (OSTI)

than total nuclear genome sequencing, making broaderavailable organellar genome sequencing methods, especiallyenables plastid genome sequencing from both parasitic and

McNeal, Joel R.; Leebens-Mack, James H.; Arumuganathan, K.; Kuehl, Jennifer V.; Boore, Jeffrey L.; dePamphilis, Claude W.

2005-01-01T23:59:59.000Z

325

US, Russian Federation Sign Joint Statement on Reactor Conversion |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

US, Russian Federation Sign Joint Statement on Reactor Conversion US, Russian Federation Sign Joint Statement on Reactor Conversion US, Russian Federation Sign Joint Statement on Reactor Conversion June 26, 2012 - 12:00pm Addthis News Media Contact (202) 586-4940 This release is cross-posted from NNSA.energy.gov. MOSCOW - The U.S. and Russian Federation jointly announced today that the first stage of work defined in the Implementing Agreement between the Russian State Corporation for Atomic Energy (Rosatom) and the Department of Energy (DOE) Regarding Cooperation in Concluding Feasibility Studies of the Conversion of Russian Research Reactors of Dec. 7, 2010, has been completed. The announcement comes at the close of the most recent session of the Working Group on Nuclear Energy and Nuclear Security under the U.S.-Russia bilateral Presidential Commission, co-chaired by Daniel

326

US, Russian Federation Sign Joint Statement on Reactor Conversion |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

US, Russian Federation Sign Joint Statement on Reactor Conversion US, Russian Federation Sign Joint Statement on Reactor Conversion US, Russian Federation Sign Joint Statement on Reactor Conversion June 26, 2012 - 12:00pm Addthis News Media Contact (202) 586-4940 This release is cross-posted from NNSA.energy.gov. MOSCOW - The U.S. and Russian Federation jointly announced today that the first stage of work defined in the Implementing Agreement between the Russian State Corporation for Atomic Energy (Rosatom) and the Department of Energy (DOE) Regarding Cooperation in Concluding Feasibility Studies of the Conversion of Russian Research Reactors of Dec. 7, 2010, has been completed. The announcement comes at the close of the most recent session of the Working Group on Nuclear Energy and Nuclear Security under the U.S.-Russia bilateral Presidential Commission, co-chaired by Daniel

327

United States -- Mexican joint ventures: A case history approach  

Science Conference Proceedings (OSTI)

Because the Mexican government has encouraged investment in Mexico by increasing the percentage of ownership of a Mexican business that a US company can hold, joint ventures are more attractive now than they had been in the past. This study provides preliminary information for US renewable energy companies who are interested in forming a joint venture with a Mexican company. This report is not intended to be a complete reference but does identifies a number of important factors that should be observed when forming a Mexican joint venture: (1)Successful joint ventures achieve the goals of each partner. (2)It is essential that all parties agree to the allocation of responsibilities. (3)Put everything in writing. (4)Research in depth the country or countries in which you are considering doing business.

Moore, N.L.; Chidester, R.J.; Hughes, K.R.; Fowler, R.A.

1993-03-01T23:59:59.000Z

328

Joint Outreach Task Group Video Series | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Outreach Task Group Video Series Joint Outreach Task Group Video Series Joint Outreach Task Group Video Series Greeting: Inter-Agency Partnership, Commitment, and Service to the American workers The purpose of this video series is to provide an overview of the roles and responsibilities of the federal government offices and entities involved in the Energy Employees Occupational Illness Compensation Program Act (EEOIOCPA) and the Former Worker Medical Screening Program (FWP), two programs that serve eligible workers from the Department of Energy (DOE). In the interest of combining resources, since both the EEOICPA and FWP serve a similar population of workers, the federal entities have partnered to hold local outreach meetings in and around active or closed DOE sites. These meetings have been very successful, but we realize not everyone can

329

Whole Genome Duplications, Multi-Break Rearrangements, and Genome Halving Theorem  

E-Print Network (OSTI)

The Genome Halving Problem, motivated by the whole genome duplication events in molecular evolution, was solved by El-Mabrouk and Sankoff. The El-Mabrouk– Sankoff algorithm is rather complex inspiring a quest for a simpler solution. An alternative approach to Genome Halving Problem based on the notion of the contracted breakpoint graph was recently proposed in [2]. This new technique reveals that while the El-Mabrouk–Sankoff result is correct in most cases, it does not hold in the case of unichromosomal genomes. This raises a problem of correcting El-Mabrouk–Sankoff analysis and devising an algorithm that deals adequately with all genomes. In this paper we efficiently classify all genomes into two classes and show that while the El-Mabrouk–Sankoff theorem holds for the first class, it is incorrect for the second class. The crux of our analysis is a new combinatorial invariant defined on duplicated permutations. Using this invariant we were able to come up with a full proof of the Genome Halving theorem and a polynomial algorithm for Genome Halving Problem (for unichromosomal genomes). We also give the first short proof of the original El-Mabrouk–Sankoff result for multichromosomal genomes. Finally, we discuss a generalization of Genome Halving Problem for a more general set of rearrangement operations (including transpositions) and propose an efficient algorithm for solving this problem. 1

Max A. Alekseyev; Pavel A. Pevzner

2007-01-01T23:59:59.000Z

330

Final Report DOE Contract No. DE-FG36-04G014294 ICEKAP 2004: A Collaborative Joint Geophysical Imaging Project at Krafla and IDDP P.E. Malin, S.A. Onacha, E. Shalev Division of Earth and Ocean Sciences Nicholas School of the Environment Duke University Durham, NC 27708  

SciTech Connect

In this final report, we discuss both theoretical and applied research resulting from our DOE project, ICEKAP 2004: A Collaborative Joint Geophysical Imaging Project at Krafla and IDDP. The abstract below begins with a general discussion of the problem we addressed: the location and characterization of “blind” geothermal resources using microearthquake and magnetotelluric measurements. The abstract then describes the scientific results and their application to the Krafla geothermal area in Iceland. The text following this abstract presents the full discussion of this work, in the form of the PhD thesis of Stephen A. Onacha. The work presented here was awarded the “Best Geophysics Paper” at the 2005 Geothermal Resources Council meeting, Reno. This study presents the modeling of buried fault zones using microearthquake and electrical resistivity data based on the assumptions that fluid-filled fractures cause electrical and seismic anisotropy and polarization. In this study, joint imaging of electrical and seismic data is used to characterize the fracture porosity of the fracture zones. P-wave velocity models are generated from resistivity data and used in locating microearthquakes. Fracture porosity controls fluid circulation in the hydrothermal systems and the intersections of fracture zones close to the heat source form important upwelling zones for hydrothermal fluids. High fracture porosity sites occur along fault terminations, fault-intersection areas and fault traces. Hydrothermal fault zone imaging using resistivity and microearthquake data combines high-resolution multi-station seismic and electromagnetic data to locate rock fractures and the likely presence fluids in high temperature hydrothermal systems. The depths and locations of structural features and fracture porosity common in both the MT and MEQ data is incorporated into a joint imaging scheme to constrain resistivity, seismic velocities, and locations of fracture systems. The imaging of the fault zones is constrained by geological, drilling, and geothermal production data. The objective is to determine interpretation techniques for evaluating structural controls of fluid circulation in hydrothermal systems. The conclusions are: • directions of MT polarization and anisotropy and MEQ S-splitting correlate. Polarization and anisotropy are caused by fluid filled fractures at the base of the clay cap. •Microearthquakes occur mainly on the boundary of low resistivity within the fracture zone and high resistivity in the host rock. Resistivity is lowest within the core of the fracture zone and increases towards the margins of the fracture zone. The heat source and the clay cap for the hydrothermal have very low resistivity of less than 5?m. •Fracture porosity imaged by resistivity indicates that it varies between 45-5% with most between 10-20%, comparable to values from core samples in volcanic areas in Kenya and Iceland. For resistivity values above 60?m, the porosity reduces drastically and therefore this might be used as the upper limit for modeling fracture porosity from resistivity. When resistivity is lower than 5?m, the modeled fracture porosity increases drastically indicating that this is the low resistivity limit. This is because at very low resistivity in the heat source and the clay cap, the resistivity is dominated by ionic conduction rather than fracture porosity. •Microearthquakes occur mainly above the heat source which is defined by low resistivity at a depth of 3-4.5 km at the Krafla hydrothermal system and 4-7 km in the Longonot hydrothermal system. •Conversions of S to P waves occur for microearthquakes located above the heat source within the hydrothermal system. Shallow microearthquakes occur mainly in areas that show both MT and S-wave anisotropy. •S-wave splitting and MT anisotropy occurs at the base of the clay cap and therefore reflects the variations in fracture porosity on top of the hydrothermal system. •In the Krafla hydrothermal system in Iceland, both MT polarization and MEQ splitting directions align with

Malin, Peter E.; Shalev, Eylon; Onacha, Stepthen A.

2006-12-15T23:59:59.000Z

331

Final Report DOE Contract No. DE-FG36-04G014294 ICEKAP 2004: A Collaborative Joint Geophysical Imaging Project at Krafla and IDDP P.E. Malin, S.A. Onacha, E. Shalev Division of Earth and Ocean Sciences Nicholas School of the Environment Duke University Durham, NC 27708  

Science Conference Proceedings (OSTI)

In this final report, we discuss both theoretical and applied research resulting from our DOE project, ICEKAP 2004: A Collaborative Joint Geophysical Imaging Project at Krafla and IDDP. The abstract below begins with a general discussion of the problem we addressed: the location and characterization of “blind” geothermal resources using microearthquake and magnetotelluric measurements. The abstract then describes the scientific results and their application to the Krafla geothermal area in Iceland. The text following this abstract presents the full discussion of this work, in the form of the PhD thesis of Stephen A. Onacha. The work presented here was awarded the “Best Geophysics Paper” at the 2005 Geothermal Resources Council meeting, Reno. This study presents the modeling of buried fault zones using microearthquake and electrical resistivity data based on the assumptions that fluid-filled fractures cause electrical and seismic anisotropy and polarization. In this study, joint imaging of electrical and seismic data is used to characterize the fracture porosity of the fracture zones. P-wave velocity models are generated from resistivity data and used in locating microearthquakes. Fracture porosity controls fluid circulation in the hydrothermal systems and the intersections of fracture zones close to the heat source form important upwelling zones for hydrothermal fluids. High fracture porosity sites occur along fault terminations, fault-intersection areas and fault traces. Hydrothermal fault zone imaging using resistivity and microearthquake data combines high-resolution multi-station seismic and electromagnetic data to locate rock fractures and the likely presence fluids in high temperature hydrothermal systems. The depths and locations of structural features and fracture porosity common in both the MT and MEQ data is incorporated into a joint imaging scheme to constrain resistivity, seismic velocities, and locations of fracture systems. The imaging of the fault zones is constrained by geological, drilling, and geothermal production data. The objective is to determine interpretation techniques for evaluating structural controls of fluid circulation in hydrothermal systems. The conclusions are: • directions of MT polarization and anisotropy and MEQ S-splitting correlate. Polarization and anisotropy are caused by fluid filled fractures at the base of the clay cap. •Microearthquakes occur mainly on the boundary of low resistivity within the fracture zone and high resistivity in the host rock. Resistivity is lowest within the core of the fracture zone and increases towards the margins of the fracture zone. The heat source and the clay cap for the hydrothermal have very low resistivity of less than 5?m. •Fracture porosity imaged by resistivity indicates that it varies between 45-5% with most between 10-20%, comparable to values from core samples in volcanic areas in Kenya and Iceland. For resistivity values above 60?m, the porosity reduces drastically and therefore this might be used as the upper limit for modeling fracture porosity from resistivity. When resistivity is lower than 5?m, the modeled fracture porosity increases drastically indicating that this is the low resistivity limit. This is because at very low resistivity in the heat source and the clay cap, the resistivity is dominated by ionic conduction rather than fracture porosity. •Microearthquakes occur mainly above the heat source which is defined by low resistivity at a depth of 3-4.5 km at the Krafla hydrothermal system and 4-7 km in the Longonot hydrothermal system. •Conversions of S to P waves occur for microearthquakes located above the heat source within the hydrothermal system. Shallow microearthquakes occur mainly in areas that show both MT and S-wave anisotropy. •S-wave splitting and MT anisotropy occurs at the base of the clay cap and therefore reflects the variations in fracture porosity on top of the hydrothermal system. •In the Krafla hydrothermal system in Iceland, both MT polarization and MEQ splitting directions align with

Malin, Peter E.; Shalev, Eylon; Onacha, Stepthen A.

2006-12-15T23:59:59.000Z

332

Jet Joint Undertaking  

E-Print Network (OSTI)

Recent experience with the use of tritium fuel in the Tokamak Fusion Test Reactor and the Joint European Torus, together with progress in developing the technical design of the International Thermonuclear Experimental Reactor has expanded the technical knowledge base for tritium issues in fusion. This paper reports on an IEA workshop that brought together scientists and engineers to share experience and expertise on all fusion related tritium issues. Extensive discussion periods were devoted to exploring outstanding issues and identifying potential R&D avenues to address them. This paper summarizes the presentations, discussions and recommendations.

C H Skinner; C Gentile; J Hosea; D Mueller; P Coad; Abingdon Ox Ea; G Federici; Garching Germany; R Haange

1998-01-01T23:59:59.000Z

333

Joint DOE-Rosatom Statement | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Enriched Uranium Agreement Between the USA and the Russian Federation has on the Domestic Uranium Mining, Conversion, and Enrichment Industries and the Ops of the Gaseous Diffusion...

334

Innovative New Industrial Technologies: An Industry/DOE Joint Endeavor  

E-Print Network (OSTI)

The Department of Energy’s Office of Industrial Programs supports research and development leading to improved energy efficiency and greater overall productivity in the industrial sector. Its basic strategy is a program of cost-shared R&D, incorporating projects with such risk that the private sector will not pursue them independently. This paper describes the Office’s major activities, operating premises and research areas. Policy considerations affecting the program’s content are identified and criteria applied in project selection are discussed. Achievement of constructive industry involvement in program development and review is viewed as vital to success. This goal, and the means by which it is being pursued, are emphasized.

Gross, T. J.

1986-06-01T23:59:59.000Z

335

Joint DoD/DOE Climate Change Fuel Cell Program  

DOE Green Energy (OSTI)

Congress agreed to provide funding to DOD for a competitive, cost- shared, near-term, Climate Change Fuel Cell program. Objectives are to reduce greenhouse gas emissions through the efficient use of fossil fuels, accelerate fuel cell commercialization for US manufacturers, and satisfy DOD goals for the environment, readiness, and economy, through activities which would stimulate end-user applications. Fuel cell power plants with combined capacity between 100 and 3,000 kW are covered.

Hooie, D.T.; Manilla, R.D.

1996-12-31T23:59:59.000Z

336

Former Worker Program - Joint Outreach Task Group  

NLE Websites -- All DOE Office Websites (Extended Search)

Group Group Former Worker Medical Screening Program (FWP) The Joint Outreach Task Group (JOTG) includes representatives from HSS, Department of Labor (DOL), the National Institute for Occupational Safety and Health (NIOSH), the Offices of the Ombudsman for DOL and NIOSH, and the DOE-funded FWP projects. The JOTG was established in 2009 under the premise that agencies/programs with common goals can work together by combining resources and coordinating outreach efforts. Each involved agency has a different mission, but the missions are complementary. By working together, the agencies are better able to serve the DOE workforce. The JOTG focuses on educating the former workers on the programs and resources available to them. The JOTG has created a monthly calendar of community events to facilitate interagency and community involvement in these events.

337

Metal to ceramic sealed joint  

DOE Patents (OSTI)

A metal to ceramic sealed joint which can withstand wide variations in temperature and maintain a good seal is provided for use in a device adapted to withstand thermal cycling from about 20 to about 1000 degrees C. The sealed joint includes a metal member, a ceramic member having an end portion, and an active metal braze forming a joint to seal the metal member to the ceramic member. The joint is positioned remote from the end portion of the ceramic member to avoid stresses at the ends or edges of the ceramic member. The sealed joint is particularly suited for use to form sealed metal to ceramic joints in a thermoelectric generator such as a sodium heat engine where a solid ceramic electrolyte is joined to metal parts in the system.

Lasecki, John V. (Livonia, MI); Novak, Robert F. (Farmington Hills, MI); McBride, James R. (Ypsilanti, MI)

1991-01-01T23:59:59.000Z

338

Metal to ceramic sealed joint  

DOE Patents (OSTI)

A metal to ceramic sealed joint which can withstand wide variations in temperature and maintain a good seal is provided for use in a device adapted to withstand thermal cycling from about 20 to about 1000 degrees C. The sealed joint includes a metal member, a ceramic member having an end portion, and an active metal braze forming a joint to seal the metal member to the ceramic member. The joint is positioned remote from the end portion of the ceramic member to avoid stresses at the ends or edges of the ceramic member. The sealed joint is particularly suited for use to form sealed metal to ceramic joints in a thermoelectric generator such as a sodium heat engine where a solid ceramic electrolyte is joined to metal parts in the system. 11 figures.

Lasecki, J.V.; Novak, R.F.; McBride, J.R.

1991-08-27T23:59:59.000Z

339

Genomics and Systems Biology  

NLE Websites -- All DOE Office Websites (Extended Search)

Genomics and Systems Biology LANL leads the world in computational finishing of microbial genomes Read caption + In 2013, Los Alamos scientist Richard Sayre and his team...

340

JOINT OFFICER MANAGEMENT PROGRAM PROCEDURES  

E-Print Network (OSTI)

implementation of the DOD Joint Officer Management (JOM) and Joint Qualification System (JQS) per references a through c. Reference a delegates the authority to the Chairman of the Joint Chiefs of Staff to establish and publish regulations and procedures to ensure compliance with the statutory and Department policy standards for DOD’s JOM program. 2. Cancellation. CJCSI 1330.02C, 24 February 2006, is cancelled. Required review of promotion selection board results policy guidance has been incorporated in this instruction.

References See Enclosure N; Responsibilities For

2008-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


341

Technical status of the Dish/Stirling Joint Venture Program  

DOE Green Energy (OSTI)

Initiated in 1991; the Dish/Stirling Joint Venture Program (DSJVP) is a 5-year, $17.2 million joint venture which is funded by Cummins Power Generation, Inc. (CPG) of Columbus, Indiana and the United States Department of Energy`s (DOE) Solar Thermal and Biomass Power Division. Sandia National Laboratories administers and provides technical management for this contract on the DOE`s behalf. In January, 1995; CPG advanced to Phase 3 of this three-phase contract. The objective of the DSJVP is to develop and commercialize a 7-kW. Dish/Stirling System for remote power markets by 1997. In this paper, the technical status of the major subsystems which comprise the CPG 7-kW{sub e} Dish/Stirling System is presented. These subsystems include the solar concentrator, heat pipe receiver, engine/alternator, power conditioning, and automatic controls.

Bean, J.R. [Cummins Power Generation, Inc., Columbus, IN (United States); Diver, R.B. [Sandia National Labs., Albuquerque, NM (United States)

1995-06-01T23:59:59.000Z

342

DOE017-0153  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

5525 5525 DOE017-0153 ,-.or/ N"( - ./,'-'S MaryBeth Zimmerman 02/14/2001 11:08AM / -- T ' ,44 L - ( _w _1_'- _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ - .I f . J To: Kenneth Friedman/EE/DOE@DOE, Peggy Podolak/EE/DOE@DOE, Linda Silverman/EE/DOE@DOE, Ed Wall/EE/DOE@DOE, David RodgerslEE/DOE@DOE, Jerry DionlEE/DOE@DOE, Gail McKinley/EE/DOE@DOE. Lawrence MansuetifEE/DOE@DOE cc: John Sullivan/EE/DOE@DOE. Darrell Beschen/EEIDOE@DOE, Michael York/EE/DOE@DOE, Buddy GarlandlEEIDOE@DOE, Nancy Jefferv/EEIDOE@DOE, Joel Rubin/EE/DOE@DOE. Sam Baldwin/EE/DOE@DOE, IEE-ADAS Subject: FW: NEP Draft outline Directions on NEP Assessment paper. Please read all of this very carefully before proceeding: Product Schedule: * Inputs due from sectors to Planning: COB on Thursday (sorry) o Due from EERE to Policy Office: noon on Friday

343

DOE-2  

NLE Websites -- All DOE Office Websites (Extended Search)

standards in the U.S. and other countries. DOE-2 is also the basis of numerous handbooks on energy-efficient buildings and building components. Many design and consulting...

344

Negotiating equity for management of DOE wastes  

SciTech Connect

One important factor frustrating optimal management of Department of Energy (DOE)-complex wastes is the inability to use licensed and permitted facilities systematically. Achieving the goal of optimal use of DOE`s waste management facilities is politically problematic for two reasons. First, no locale wants to bear a disproportionate burden from DOE wastes. Second, the burden imposed by additional wastes transported from one site to another is difficult to characterize. To develop a viable framework for equitably distributing these burdens while achieving efficient use of all DOE waste management facilities, several implementation and equity issues must be addressed and resolved. This paper discusses stakeholder and equity issues and proposes a framework for joint research and action that could facilitate equity negotiations among stakeholder and move toward a more optimal use of DOE`s waste management capabilities.

Carnes, S.A.

1994-09-01T23:59:59.000Z

345

Negotiating equity for management of DOE wastes  

SciTech Connect

One important factor frustrating optimal management of DOE-complex wastes is inability to use licensed and permitted facilities systematically. Achieving the goal of optimal use of DOE`s waste management facilities is politically problematic for two reasons. First, no locale wants to bear a disproportionate burden from DOE wastes. Second, the burden imposed by additional wastes transported from one site to another is difficult to characterize. To develop a viable framework for equitably distributing these burdens while achieving efficient use of all DOE waste management facilities, several implementation and equity issues must be addressed and resolved. This paper discusses stakeholders and equity issues and proposes a framework for joint research and action that could facilitate equity negotiations among stakeholders and move toward a more optimal use of DOE`s waste management capabilities.

Carnes, S.A.

1993-11-01T23:59:59.000Z

346

CRUCIFORM CONTROL ROD JOINT  

DOE Patents (OSTI)

An invention is described which relates to nuclear reactor control rod components and more particularly to a joint between cruciform control rod members and cruciform control rod follower members. In one embodiment this invention provides interfitting crossed arms at adjacent ends of a control rod and its follower in abutting relation. This holds the members against relative opposite longitudinal movement while a compression member keys the arms against relative opposite rotation around a common axis. Means are also provided for centering the control rod and its follower on a common axis and for selectively releasing the control rod from its follower for the insertion of a replacement of the control rod and reuse of the follower. (AEC)

Thorp, A.G. II

1962-08-01T23:59:59.000Z

347

Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic Bacterium Marinitoga piezophila KA3  

Science Conference Proceedings (OSTI)

Marinitoga piezophila KA3 is a thermophilic, anaerobic, chemoorganotrophic, sulfur-reducing bacterium isolated from the Grandbonum deep-sea hydrothermal vent site at the East Pacific Rise (13 degrees N, 2,630-m depth). The genome of M. piezophila KA3 comprises a 2,231,407-bp circular chromosome and a 13,386-bp circular plasmid. This genome was sequenced within Department of Energy Joint Genome Institute CSP 2010.

Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Han, James [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Teshima, Hazuki [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Vannier, Pauline [Ifremer, Plouzane, France; Oger, Phil [University of Lyon, France; Bartlett, Douglas [University of California, San Diego & La Jolla; Noll, Kenneth M [University of Connecticut, Storrs; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Jebbar, Mohamed [Ifremer, Plouzane, France

2012-01-01T23:59:59.000Z

348

Genome Assembly Forensics: Metrics for Assessing Assembly Correctness (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)  

Science Conference Proceedings (OSTI)

University of Maryland's Mihai Pop on "Genome Assembly Forensics: Metrics for Assessing Assembly Correctness" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

Pop, Mihai [University of Maryland

2011-10-13T23:59:59.000Z

349

Sequencing Single Cell Microbial Genomes with Microfluidic Amplifications Tools (MICW - Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)  

Science Conference Proceedings (OSTI)

Stanford University's Steve Quake on "Sequencing Single Cell Microbial Genomes with Microfluidic Amplification Tools" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

Quake, Steve [University of Stanford

2011-10-12T23:59:59.000Z

350

DOE grant to support enhanced biofuel crop design | ornl.gov  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE grant to support enhanced biofuel crop design January 01, 2013 Xiaohan Yang works with a model plant for crassulacean acid metabolism (CAM) genomics research. January 2013....

351

Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1T)  

Science Conference Proceedings (OSTI)

Polynucleobacter necessarius subsp. asymbioticus Hahn et al. 2009 is one of currently two subspecies of P. necessarius. While P. necessarius subsp. asymbioticus is a free-living bacterium, the closely related second subspecies, P. necessarius subsp. necessarius is an obligate endosymbiont living in the cytoplasm of freshwater ciliates of the genus Euplotes aediculatus. The two P. necessarius subspecies were the closest thus far reported phylogenetic neighbors that differ in their lifestyle as obligately free-living vs. obligate endosymbiontic, and they are the only members of the genus Polynucleobacter with completely sequenced genomes. The genome-sequenced strain represents a group of closely related strains not distinguishable by 16S rRNA, 16S-23S ITS or glnA sequences, which is persistent in the home habitat of the strain and frequently contributes > 10% of total bacterial numbers in water samples of the habitat. The 2,159,490 bp long chromosome with a total of 2,088 protein-coding and 48 RNA genes was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program 2006.

Meincke, Linda [Los Alamos National Laboratory (LANL); Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Berry, Kerrie W. [United States Department of Energy Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Hammon, Nancy [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Larimer, Frank W [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Wu, Qinglong L. [Austrian Academy of Sciences, Institute for Limnology, Mondsee, Austria; Pockl, Matthias [Austrian Academy of Sciences, Institute for Limnology, Mondsee, Austria; Hahn, Martin W. [Austrian Academy of Sciences, Institute for Limnology, Mondsee, Austria; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

2012-01-01T23:59:59.000Z

352

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)  

Science Conference Proceedings (OSTI)

Herpetosiphon aurantiacus Holt and Lewin 1968 is the type species of the genus Herpetosiphon, which in turn is the type genus of the family Herpetosiphonaceae, type family of the order Herpe- tosiphonales in the phylum Chloroflexi. H. aurantiacus cells are organized in filaments which can rapidly glide. The species is of interest not only because of its rather isolated position in the tree of life, but also because Herpetosiphon ssp. were identified as predators capable of facultative pre- dation by a wolf pack strategy and of degrading the prey organisms by excreted hydrolytic en- zymes. The genome of H. aurantiacus strain 114-95T is the first completely sequenced genome of a member of the family Herpetosiphonaceae. The 6,346,587 bp long chromosome and the two 339,639 bp and 99,204 bp long plasmids with a total of 5,577 protein-coding and 77 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2005.

Kiss, Hajnalka [Los Alamos National Laboratory (LANL); Nett, Markus [Hans Knöll Institute, Jena, Germany; Domin, Nicole [Hans Knöll Institute, Jena, Germany; Martin, Karin [Hans Knöll Institute, Jena, Germany; Maresca, Julia A. [Pennsylvania State University, University Park, PA; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Berry, Kerrie W. [United States Department of Energy Joint Genome Institute; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute; Dalin, Eileen [U.S. Department of Energy, Joint Genome Institute; Tice, Hope [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Richardson, P M [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Schmutz, Jeremy [Stanford University; Brettin, Thomas S [ORNL; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Bryant, Donald A. [Pennsylvania State University, University Park, PA

2011-01-01T23:59:59.000Z

353

Major DOE Biofuels Project Locations  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Feedstock, and Technology Diversity Feedstock, and Technology Diversity Pacific Ethanol Biochemical Wheat Straw/Corn Stover (Boardman, OR) Iogen Biochemical Wheat Straw (Shelly, ID) Blue Fire Biochemical Municipal Solid Waste (Corona, CA) Poet Biochemical Corn Stover (Emmetsburg, IA) Lignol Biochemical Wood Residues (Commerce City, CO) ICM Biochemical Switchgrass, Corn Stover (St. Joseph, MO) Abengoa Biochemical/ Thermo Ag Waste, Switchgrass (Hugoton, KS) DOE Joint Bioenergy Institute (Berkeley, CA) DOE Great Lakes Bioenergy Research Center (Madison, WI) DOE Bioenergy Science Center (Oak Ridge, TN) Stora Enso North America Thermochemical Wood Chips (Wisconsin Rapids, WI) Range Fuels Thermochemical Wood Chips (Soperton, GA) Alico Thermochemical/Bio Citrus Waste (LaBelle, FL) Six Commercial-Scale Biorefinergy

354

Major DOE Biofuels Project Locations  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Biofuels Biofuels Project Locations Pacific Ethanol (Boardman, OR) BlueFire Ethanol (Corona, CA) POET (Emmetsburg, IA) Lignol Innovations (Commerce City, CO) ICM (St. Joseph, MO) Abengoa (Hugoton, KS) DOE Joint Bioenergy Institute (Berkeley, CA) DOE Great Lakes Bioenergy Research Center (Madison, WI) DOE Bioenergy Science Center (Oak Ridge, TN) NewPage (Wisconsin Rapids, WI) Range Fuels (Soperton, GA) DSM Innovation Center (Parsippany, NJ) Novozymes (Davis, CA) Genencor (Palo Alto, CA) Verenium Corp (San Diego, CA) Dupont (Wilmington, DE) Mascoma (Lebanon, NH) Cargill Inc (Minneapolis, MN) Regional Partnerships South Dakota State University, Brookings, SD Cornell University, Ithaca, NY University of Tennessee, Knoxville, TN Oklahoma State University, Stillwater, OK Oregon State University, Corvallis, OR

355

Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum  

Science Conference Proceedings (OSTI)

Undergraduate life sciences education needs an overhaul, as clearly described in the National Research Council of the National Academies publication BIO 2010: Transforming Undergraduate Education for Future Research Biologists. Among BIO 2010's top recommendations is the need to involve students in working with real data and tools that reflect the nature of life sciences research in the 21st century. Education research studies support the importance of utilizing primary literature, designing and implementing experiments, and analyzing results in the context of a bona fide scientific question in cultivating the analytical skills necessary to become a scientist. Incorporating these basic scientific methodologies in undergraduate education leads to increased undergraduate and post-graduate retention in the sciences. Toward this end, many undergraduate teaching organizations offer training and suggestions for faculty to update and improve their teaching approaches to help students learn as scientists, through design and discovery (e.g., Council of Undergraduate Research [www.cur.org] and Project Kaleidoscope [www.pkal.org]). With the advent of genome sequencing and bioinformatics, many scientists now formulate biological questions and interpret research results in the context of genomic information. Just as the use of bioinformatic tools and databases changed the way scientists investigate problems, it must change how scientists teach to create new opportunities for students to gain experiences reflecting the influence of genomics, proteomics, and bioinformatics on modern life sciences research. Educators have responded by incorporating bioinformatics into diverse life science curricula. While these published exercises in, and guidelines for, bioinformatics curricula are helpful and inspirational, faculty new to the area of bioinformatics inevitably need training in the theoretical underpinnings of the algorithms. Moreover, effectively integrating bioinformatics into courses or independent research projects requires infrastructure for organizing and assessing student work. Here, we present a new platform for faculty to keep current with the rapidly changing field of bioinformatics, the Integrated Microbial Genomes Annotation Collaboration Toolkit (IMG-ACT). It was developed by instructors from both research-intensive and predominately undergraduate institutions in collaboration with the Department of Energy-Joint Genome Institute (DOE-JGI) as a means to innovate and update undergraduate education and faculty development. The IMG-ACT program provides a cadre of tools, including access to a clearinghouse of genome sequences, bioinformatics databases, data storage, instructor course management, and student notebooks for organizing the results of their bioinformatic investigations. In the process, IMG-ACT makes it feasible to provide undergraduate research opportunities to a greater number and diversity of students, in contrast to the traditional mentor-to-student apprenticeship model for undergraduate research, which can be too expensive and time-consuming to provide for every undergraduate. The IMG-ACT serves as the hub for the network of faculty and students that use the system for microbial genome analysis. Open access of the IMG-ACT infrastructure to participating schools ensures that all types of higher education institutions can utilize it. With the infrastructure in place, faculty can focus their efforts on the pedagogy of bioinformatics, involvement of students in research, and use of this tool for their own research agenda. What the original faculty members of the IMG-ACT development team present here is an overview of how the IMG-ACT program has affected our development in terms of teaching and research with the hopes that it will inspire more faculty to get involved.

Ditty, Jayna L.; Kvaal, Christopher A.; Goodner, Brad; Freyermuth, Sharyn K.; Bailey, Cheryl; Britton, Robert A.; Gordon, Stuart G.; Heinhorst, Sabine; Reed, Kelynne; Xu, Zhaohui; Sanders-Lorenz, Erin R.; Axen, Seth; Kim, Edwin; Johns, Mitrick; Scott, Kathleen; Kerfeld, Cheryl A.

2011-08-01T23:59:59.000Z

356

2014 Joint Action Workshop | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

2014 Joint Action Workshop 2014 Joint Action Workshop January 12, 2014 8:00AM EST to January 14, 2014 5:00PM EST Palm Desert, California The Joint Action Workshop is an annual...

357

JGI Partners  

NLE Websites -- All DOE Office Websites (Extended Search)

Partners The DOE Joint Genome Institute (DOE JGI) integrates the genomic capabilities of six partner institutions: Lawrence Berkeley National Laboratory, Lawrence Livermore...

358

Obama Administration Announces More Than $327 Million in Recovery...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

for DOE Joint Genome Institute, the world's largest genomic sequencing facility for non-medical, DOE mission-related research in bioenergy, climate, and environmental...

359

DOE HANDBOOK  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Handbook on Overseas Assignments Handbook on Overseas Assignments United States Department of Energy Office of Human Capital Management July 2013 2 Introduction This handbook covers all types of Federal employment overseas, including details, both within DOE as well as to other agencies; transfers to approved international organizations; assignments to permanent DOE positions; cost-free experts; and personal services agreements (PSAs). This handbook contains information, guidance, sample service agreements, and related documentation that are to be used to implement the following directives: a. Executive Order 11552, Providing for Details and Transfers of Federal Employees to International Organizations at http://www.archives.gov/federal-register/codification/executive-order/11552.html;

360

ETDE/INIS Joint Thesaurus | Scientific and Technical Information Program  

Office of Scientific and Technical Information (OSTI)

ETDE/INIS Joint Thesaurus ETDE/INIS Joint Thesaurus Print page Print page Email page Email page As the DOE representative in these international STI exchanges, OSTI provides the U.S. input using the ETDE/INIS Joint Thesaurus, which contains the controlled terminology for indexing all information within the subject scopes of the International Nuclear Information System (INIS) and the Energy Technology Data Exchange (ETDE). It contains 21,147 valid descriptors and 9,114 forbidden terms. The terminology is intended for use in subject descriptions for input or retrieval of information in these systems. The vocabulary is updated routinely, therefore please refer to the supplements for cumulative references for changes made to the initial printing of the thesaurus. Last updated: February 17, 2011

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


361

Washington Joint Aquatic Resources Permit Application (JARPA...  

Open Energy Info (EERE)

Washington Joint Aquatic Resources Permit Application (JARPA) Jump to: navigation, search OpenEI Reference LibraryAdd to library Legal Document- OtherOther: Washington Joint...

362

Joint SSRTNet/ALS-MES Workshop report  

E-Print Network (OSTI)

conclusion of his SRRTNet/ALS-MES Workshop presentation inJoint SSRTNet/ALS-MES Workshop This joint workshop broughtthe Advanced Light Source (ALS) Users’ Association Annual

Shuh, David; Van Hove, Michel

2001-01-01T23:59:59.000Z

363

DOE Report  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

2 2 Environmental Assessment for the Multipurpose Haul Road Within the Idaho National Laboratory Site August 2010 DOE/EA-1772 Environmental Assessment for the Multipurpose Haul Road Within the Idaho National Laboratory Site August 2010 CONTENTS ACRONYMS.............................................................................................................................................. vii GLOSSARY ................................................................................................................................................ ix 1. PURPOSE AND NEED ..................................................................................................................... 1 1.1 Background ...........................................................................................................................

364

DOE Report  

NLE Websites -- All DOE Office Websites (Extended Search)

772 772 Environmental Assessment for the Multipurpose Haul Road Within the Idaho National Laboratory Site August 2010 DOE/EA-1772 Environmental Assessment for the Multipurpose Haul Road Within the Idaho National Laboratory Site August 2010 CONTENTS ACRONYMS.............................................................................................................................................. vii GLOSSARY ................................................................................................................................................ ix 1. PURPOSE AND NEED ..................................................................................................................... 1 1.1 Background ...........................................................................................................................

365

CGAL: computing genome assembly likelihoods  

E-Print Network (OSTI)

SM, Lei M, Li J, et al: Genome sequencing in microfabricatedDe novo bacterial genome sequencing: millions of very shortGenome assembly, evaluation, likelihood, sequencing.

Rahman, Atif; Pachter, Lior

2013-01-01T23:59:59.000Z

366

Transcript of March 4, 2011 Joint Public Meeting  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Transcript of Proceedings Transcript of Proceedings NUCLEAR REGULATORY COMMISSION Title: Disposal of Low-Level Nuclear Waste Joint NRC/DOE Workshop Docket Number: (n/a) Location: Phoenix, Arizona Date: Friday, March 4, 2011 Work Order No.: NRC-753 Pages 1-267 NEAL R. GROSS AND CO., INC. Court Reporters and Transcribers 1323 Rhode Island Avenue, N.W. Washington, D.C. 20005 (202) 234-4433 NEAL R. GROSS COURT REPORTERS AND TRANSCRIBERS 1323 RHODE ISLAND AVE., N.W. (202) 234-4433 WASHINGTON, D.C. 20005-3701 www.nealrgross.com 1 JOINT DOE/NRC WORKSHOP ON 1 DISPOSAL OF LOW-LEVEL RADIOACTIVE WASTE 2 + + + + + 3 Hyatt Regency Phoenix 4 122 North Second Street 5 Regency A Ballroom, First Floor 6 Phoenix, Arizona 85004 7

367

Joint probabilities and quantum cognition  

E-Print Network (OSTI)

In this paper we discuss the existence of joint probability distributions for quantum-like response computations in the brain. We do so by focusing on a contextual neural-oscillator model shown to reproduce the main features of behavioral stimulus-response theory. We then exhibit a simple example of contextual random variables not having a joint probability distribution, and describe how such variables can be obtained from neural oscillators, but not from a quantum observable algebra.

J. Acacio de Barros

2012-06-26T23:59:59.000Z

368

Joint probabilities and quantum cognition  

SciTech Connect

In this paper we discuss the existence of joint probability distributions for quantumlike response computations in the brain. We do so by focusing on a contextual neural-oscillator model shown to reproduce the main features of behavioral stimulus-response theory. We then exhibit a simple example of contextual random variables not having a joint probability distribution, and describe how such variables can be obtained from neural oscillators, but not from a quantum observable algebra.

Acacio de Barros, J. [Liberal Studies, 1600 Holloway Ave., San Francisco State University, San Francisco, CA 94132 (United States)

2012-12-18T23:59:59.000Z

369

Genomics and the human genome project: implications for psychiatry  

E-Print Network (OSTI)

and psychosis: a convergent functional genomics approach.Physiology & Genomics, 4, 83–91. O LIPHANT , A. , B ARKER ,2004), 16(4), 294–300 Genomics and the Human Genome Project:

Kelsoe, J R

2004-01-01T23:59:59.000Z

370

DOE-STD-0100T-93 | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

0100T-93 0100T-93 DOE-STD-0100T-93 July 12, 1996 Licensed Reactor Nuclear Safety Criteria Applicable to DOE Reactors Canceled | Superseding DOE/NE-0100T (April 1991) This document identifies nuclear safety criteria applied to licensed reactors. The degree of application of these criteria to a DOE-owned reactor, consistent with their application to comparable licensed reactors, must be determined by the DOE and DOE contractor. DOE-STD-0100T-93, Licensed Reactor Nuclear Safety Criteria Applicable to DOE Reactors More Documents & Publications DOE-STD-101-92 National Report Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management DOE Draft Standard, Development and Use of Probabilistic Risk Assessments in Department of Energy Nuclear Safety Applications, 12/10

371

Comparative genomic workflow  

E-Print Network (OSTI)

his article describes a workflow for identifying conserved patterns in noncoding regions of vertebrate genomes, with an intention of investigating possible functions of the conserved regions. The annotations of genomes are ...

Rajapakse, Jagath

372

Fuel Cell Technologies Office: Joint Fuel Cell Bus Workshop  

NLE Websites -- All DOE Office Websites (Extended Search)

Fuel Cell Bus Workshop Fuel Cell Bus Workshop The U.S. Department of Energy (DOE) and the U.S. Department of Transportation (DOT) held a Fuel Cell Bus Workshop on June 7, 2010 in Washington, D.C. in conjunction with the DOE Hydrogen and Fuel Cell Program Annual Merit Review. The workshop plenary and breakout session brought together technical experts from industry, end users, academia, DOE national laboratories, and other government agencies to address the status and technology needs of fuel cell powered buses. Meeting Summary Joint Fuel Cell Bus Workshop Summary Report Presentations Fuel Cell Bus Workshop Overview & Purpose, Dimitrios Papageorgopoulos, DOE Users Perspective on Advanced Fuel Cell Bus Technology, Nico Bouwkamp, CaFCP and Leslie Eudy, NREL Progress and Challenges for PEM Transit Fleet Applications, Tom Madden, UTC Power, LLC

373

Functional Analysis of Shewanella, a cross genome comparison.  

Science Conference Proceedings (OSTI)

The bacterial genus Shewanella includes a group of highly versatile organisms that have successfully adapted to life in many environments ranging from aquatic (fresh and marine) to sedimentary (lake and marine sediments, subsurface sediments, sea vent). A unique respiratory capability of the Shewanellas, initially observed for Shewanella oneidensis MR-1, is the ability to use metals and metalloids, including radioactive compounds, as electron acceptors. Members of the Shewanella genus have also been shown to degrade environmental pollutants i.e. halogenated compounds, making this group highly applicable for the DOE mission. S. oneidensis MR-1 has in addition been found to utilize a diverse set of nutrients and to have a large set of genes dedicated to regulation and to sensing of the environment. The sequencing of the S. oneidensis MR-1 genome facilitated experimental and bioinformatics analyses by a group of collaborating researchers, the Shewanella Federation. Through the joint effort and with support from Department of Energy S. oneidensis MR-1 has become a model organism of study. Our work has been a functional analysis of S. oneidensis MR-1, both by itself and as part of a comparative study. We have improved the annotation of gene products, assigned metabolic functions, and analyzed protein families present in S. oneidensis MR-1. The data has been applied to analysis of experimental data (i.e. gene expression, proteome) generated for S. oneidensis MR-1. Further, this work has formed the basis for a comparative study of over 20 members of the Shewanella genus. The species and strains selected for genome sequencing represented an evolutionary gradient of DNA relatedness, ranging from close to intermediate, and to distant. The organisms selected have also adapted to a variety of ecological niches. Through our work we have been able to detect and interpret genome similarities and differences between members of the genus. We have in this way contributed to the understanding of speciation and adaptation in Shewanella in relation to its metabolic and respiratory capabilities and its environmental interactions. Through the collaboration with several research groups focused on the biology of S. oneidensis MR-1 and other members of the Shewanella genus, we have been able to link bioinformatically based predictions and analyses to experimental data in a productive manner. In additon to improving our understanding of S. oneidensis MR-1, our work is also applicable to the understanding of other environmentally versatile microbes.

Serres, Margrethe H.

2009-05-15T23:59:59.000Z

374

APPOINTMENT OF A JOINT MEMBER New Appointment  

E-Print Network (OSTI)

APPOINTMENT OF A JOINT MEMBER Renewal: New Appointment: "A joint appointment reflects the active with an academic appointment in one academic unit may be given a joint appointment in another academic unit. ..." [Article 13.10.1] In the case of a new hire, where the intention is a Joint Appointment, there needs

Saskatchewan, University of

375

Genome in a Bottle Consortium  

Science Conference Proceedings (OSTI)

Genome in a Bottle Consortium. Summary: NIST has organized the "Genome in a Bottle Consortium" to develop the reference ...

2013-03-15T23:59:59.000Z

376

Joint Maintenance Status Report of Potomac Electric Power Company amd PJM  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Maintenance Status Report of Potomac Electric Power Company Joint Maintenance Status Report of Potomac Electric Power Company amd PJM Interconnection, LLC Joint Maintenance Status Report of Potomac Electric Power Company amd PJM Interconnection, LLC Docket No. EO-05-01: Potomac Electric Power Company ("Pepco") and PJM Interconnection, L.L.C. ("PJM") hereby jointly submit this Maintenance Report to advise you of the work completed and findings made during the maintenance outages for Pepco's two 230 kV circuits from the Palmers Comer to Potomac River substations pursuant to the December 20. 2006, Department of Energy ("DOE") Order No. 202-05-3. Joint Maintenance Status Report of Potomac Electric Power Company amd PJM Interconnection, LLC More Documents & Publications Special Environmental Analysis For Actions Taken under U.S. Department of

377

Human Genome Education Program  

Science Conference Proceedings (OSTI)

The funds from the DOE Human Genome Program, for the project period 2/1/96 through 1/31/98, have provided major support for the curriculum development and field testing efforts for two high school level instructional units: Unit 1, ''Exploring Genetic Conditions: Genes, Culture and Choices''; and Unit 2, ''DNA Snapshots: Peaking at Your DNA''. In the original proposal, they requested DOE support for the partial salary and benefits of a Field Test Coordinator position to: (1) complete the field testing and revision of two high school curriculum units, and (2) initiate the education of teachers using these units. During the project period of this two-year DOE grant, a part-time Field-Test Coordinator was hired (Ms. Geraldine Horsma) and significant progress has been made in both of the original proposal objectives. Field testing for Unit 1 has occurred in over 12 schools (local and non-local sites with diverse student populations). Field testing for Unit 2 has occurred in over 15 schools (local and non-local sites) and will continue in 12-15 schools during the 96-97 school year. For both curricula, field-test sites and site teachers were selected for their interest in genetics education and in hands-on science education. Many of the site teachers had no previous experience with HGEP or the unit under development. Both of these first-year biology curriculum units, which contain genetics, biotechnology, societal, ethical and cultural issues related to HGP, are being implemented in many local and non-local schools (SF Bay Area, Southern California, Nebraska, Hawaii, and Texas) and in programs for teachers. These units will reach over 10,000 students in the SF Bay Area and continues to receive support from local corporate and private philanthropic organizations. Although HGEP unit development is nearing completion for both units, data is still being gathered and analyzed on unit effectiveness and student learning. The final field testing result from this analysis will contribute to the final revisions of each unit during the second-year of this grant.

Richard Myers; Lane Conn

2000-05-01T23:59:59.000Z

378

Genomic Data and Annotation from the SEED  

DOE Data Explorer (OSTI)

The SEED Project has been extended to support metagenomic samples and concomitant analytical tools. Moreover, the number of genomes being introduced into SEED is growing very rapidly. Building a framework to support this growth while providing highly accurate annotations is centrally important to SEED. The project’s subsystem-based annotation strategy has become the technological foundation for addressing these challenges.(copied from Appendix 7 of Systems Biology Knowledgebase for a New Era in Biology, A Genomics:GTL Report from the May 2008 Workshop, DOE/SC-0113, Grequrick, S; Fredrickson, J.K.; Stevens, R., Pub March 1, 2009.)

Fonstein, Michael; Kogan, Yakov; Osterman, Andrei; Overbeek, Ross; Vonstein, Veronika The Fellowship for Interpretation of Genomes (FIG)

379

Complete genome sequence of Halopiger xanaduensis type strain (SH6T)  

SciTech Connect

Halopiger xanaduensis is the type species of the genus Halopiger and belongs to the euryarchaeal family Halobacteriaceae. H. xanaduensis strain SH-6, which is designated as the type strain, was isolated from the sediment of a salt lake in Inner Mongolia, Lake Shangmatala. Like other members of the family Halobacteriaceae, it is an extreme halophile requiring at least 2.5 M salt for growth. We report here the sequencing and annotation of the 4,355,268 bp genome, which includes one chromosome and three plasmids. This genome is part of a Joint Genome Institute (JGI) Community Sequencing Program (CSP) project to sequence diverse haloarchaeal genomes.

Anderson, Iain [U.S. Department of Energy, Joint Genome Institute; Tindall, Brian [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Han, James [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Mikhailova, Natalia [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Teshima, Hazuki [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Land, Miriam L [ORNL; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute

2012-01-01T23:59:59.000Z

380

LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan To address the challenges associated with pursuing commercial nuclear power plant operations beyond 60 years, the U.S. Department of Energy's (DOE) Office of Nuclear Energy (NE) and the Electric Power Research Institute (EPRI) have established separate but complementary research and development programs: DOE-NE's Light Water Reactor Sustainability (LWRS) Program and EPRI's Long-Term Operations (LTO) Program. To ensure that a proper linkage is maintained between the programs, DOE-NE and EPRI executed a Memorandum of Understanding in late 2010 to "establish guiding principles under which research activities (between LWRS and LTO) could be

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


381

LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan LWRS Program and EPRI Long-Term Operations Program - Joint R&D Plan To address the challenges associated with pursuing commercial nuclear power plant operations beyond 60 years, the U.S. Department of Energy's (DOE) Office of Nuclear Energy (NE) and the Electric Power Research Institute (EPRI) have established separate but complementary research and development programs: DOE-NE's Light Water Reactor Sustainability (LWRS) Program and EPRI's Long-Term Operations (LTO) Program. To ensure that a proper linkage is maintained between the programs, DOE-NE and EPRI executed a Memorandum of Understanding in late 2010 to "establish guiding principles under which research activities (between LWRS and LTO) could be

382

Jointly Sponsored Research Program. Final report  

SciTech Connect

The Jointly Sponsored Research Program (JSRP) is a US Department of Energy (DOE) program funded through the Office of Fossil Energy and administered at the Morgantown Energy Technology Center. Under this program, which has been in place since Fiscal Year 1990, DOE makes approximately $2.5 million available each year to the Energy and Environmental Research Center (EERC) to fund projects that are of current interest to industry but which still involve significant risk, thus requiring some government contribution to offset the risk if the research is to move forward. The program guidelines require that at least 50% of the project funds originate from nonfederal sources. Projects funded under the JSRP often originate under a complementary base program, which funds higher-risk projects. The projects funded in Fiscal Year 1996 addressed a wide range of Fossil Energy interests, including hot-gas filters for advanced power systems; development of cleaner, more efficient processing technologies; development of environmental control technologies; development of environmental remediation and reuse technologies; development of improved analytical techniques; and development of a beneficiation technique to broaden the use of high-sulfur coal. Descriptions and status for each of the projects funded during the past fiscal year are included in Section A of this document, Statement of Technical Progress.

NONE

1997-07-01T23:59:59.000Z

383

DOE-1 BDL SUMMARY. DOE-1 GROUP.  

E-Print Network (OSTI)

may be this command. DOE~! Reference Manual. placed in BDL-3W-7405-EN ons c BDl, SUMMARY DOE~· I l.awrence , Californiaused in conjunction with other DOE~l documentation. Table of

Authors, Various

2011-01-01T23:59:59.000Z

384

Active DOE Technical Standards  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Active DOE Technical Standards Active DOE Technical Standards Document Number Document Title Responsible SLM DOE-HDBK-1001-96 DOE-HDBK-1002-96 DOE-HDBK-1003-96 DOE-HDBK-1010-92 DOE-HDBK-1011/1-92 DOE-HDBK-1011/2-92 DOE-HDBK-1011/3-92 DOE-HDBK-1011/4-92 DOE-HDBK-1012/1-92 DOE-HDBK-1012/2-92 DOE-HDBK-1012/3-92 DOE-HDBK-1013/1-92 DOE-HDBK-1013/2-92 DOE-HDBK-1014/1-92 DOE-HDBK-1014/2-92 DOE-HDBK-1015/1-93

385

DOE Code:  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

we1rbox installatiOn we1rbox installatiOn ____:....;...=.~;;....:..;=-+- DOE Code: - - !- Project Lead: Wes R1esland NEPA COMPLIANCE SURVEY J 3-24-10 1 Date: Project Information 1. Project Overview What are tne enwonmental mpacts? Contractor~~ _ _ _ _ ] 11 The purpose of this project is to prepare a pad for a 90 ton crane to get 1nto positiOn and ng up so we can 1 set our new weir box into position We will widen the existing road around 20 feet at the north end and taper our fill to about5 feet at the south end for a total of about 200 feeL and budd a near level pad for them tong up the crane on We will use the d1rt from the hill irnrnedJateiy north of the work to oe done 2. 3 4 What*s the legal location? What IS the durabon of the prOJed?

386

DOE F  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

420.2 420.2 All Other Editions Are Obsolete OMB Burden Disclosure Statement Public reporting burden for this collection of information is estimated to average 30 minutes per response, including the time for reviewing instructions, searching existing data sources, gathering and maintaining the data needed, and completing and reviewing the collection of information. Send comments regarding this burden estimate or any other aspect of this collection of information, including suggestions for reducing this burden, to Records Management Division, IM-11 GTN, Paperwork Reduction Project (1910-1000), U.S. Department of Energy, 1000 Independence Avenue, S.W., Washington, DC 20585; and to the Office of Management and Budget (OMB), Paperwork Reduction Project (1910-1000), Washington, DC 20503. U.S. Department of Energy Personal Property Loan Agreement DOE-PMR 109-1.5103 1. CONTROL

387

DOE Onboarding  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

One-Year Passport to Success One-Year Passport to Success What is On-boarding? Orientation On-boarding ď‚— Transactional focus and goals ď‚— Less than one week ď‚— Executed by HR Office ď‚— Address new employee needs ď‚— Completed paperwork ď‚— Strategic focus and goals ď‚— Starts before first day through first year ď‚— Supervisor & Senior Leadership involvement ď‚— Integrate multiple offices, functions and individuals ď‚— Address employee needs ď‚— Maximizes employee engagement and retention 2 On-boarding Program Goals 3 ď‚— Build and sustain high-performance culture by accelerating time for new employee to become productive ď‚— Create learning opportunities that allow new employees to successfully integrate into their new DOE organization ď‚— Provide employees with the tools and resources to

388

DOE 11  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE A ward N o.: D E--NT0005665 Final T echnical R eport (October 2 008 - S eptember 2 012) Source c haracterization a nd t emporal variation o f m ethane s eepage f rom thermokarst l akes o n t he A laska N orth S lope in r esponse t o A rctic c limate c hange Submitted b y: University o f A laska Fairbanks, A K 9 9775 Prepared for: United S tates D epartment o f E nergy National E nergy T echnology L aboratory May 29 th 2013 Office of Fossil Energy 2 DISCLAIMER This report was prepared as an account of work sponsored by an agency of the United States Government. Neither the United States Government nor any agency thereof, nor any of their employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any

389

DOE Pulse  

NLE Websites -- All DOE Office Websites (Extended Search)

go! go! home about archives subscribe Profile Dr. Isaac Gamwo (left) works with Dr. Ward Burgess (right) at the National Energy Technology Laboratory. Photo Credit: NETL. The practical application of an elite researcher's life: Isaac K. Gamwo For a man whose expertise includes reactive multiphase fluid dynamics, complex fluid properties, and chemical looping combustion processes, Dr. Isaac Gamwo is surprisingly easy to comprehend. "The research we do in this lab is not confined to the world of academia," he notes, "it has tangible impacts on the way we produce energy." As senior research chemical engineer at DOE's National Energy Technology Laboratory (NETL), Dr. Gamwo is currently focused on complex fluid properties at high temperatures and pressures. His recent work includes

390

DOE Information Center  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Information Center The U.S. Department of Energy (DOE) Information Center provides citizens a consolidated facility to obtain information and records related to the DOE's...

391

DOE Mentoring Program Guide  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

our employees have fulfilling and productive careers within the Department. DOE Strategic Plan (May 2011) DOE Mentoring Program Page 2 June 2012 Table of Contents DOE...

392

An integrative approach for genomic island prediction in Prokaryotic genomes  

Science Conference Proceedings (OSTI)

A genomic island (GI) is a segment of genomic sequence that is horizontally transferred from other genomes. The detection of genomic islands is extremely important to the medical research. Most of current computational approaches that use sequence composition ... Keywords: gene information, genomic islands, intergenic distance, sequence composition

Han Wang; John Fazekas; Matthew Booth; Qi Liu; Dongsheng Che

2011-05-01T23:59:59.000Z

393

BMC Genomics BioMed Central  

E-Print Network (OSTI)

Software Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome

Vasily Tcherepanov; Angelika Ehlers; Chris Upton

2006-01-01T23:59:59.000Z

394

Genome Science/Technologies  

NLE Websites -- All DOE Office Websites (Extended Search)

Momchilo Vuyisich Bioenergy and Biomedical Sciences Email Rebecca McDonald Bioscience Communications Email State-of-the art technology and extensive genomics expertise Protein...

395

JGI - Genomic Technologies  

NLE Websites -- All DOE Office Websites (Extended Search)

opportunities for technological access to our user services (including single cell genomics and DNA synthesis). Our Department serves at the interface between the Project...

396

United States and France Sign Joint Statement on Civil Liability...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

United States and France Sign Joint Statement on Civil Liability for Nuclear Damage United States and France Sign Joint Statement on Civil Liability for Nuclear Damage Joint...

397

Joint Environmental Management System (EMS) | Department of Energy  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Environmental Management System (EMS) Joint Environmental Management System (EMS) Joint Environmental Management System (EMS) The environmental management system (EMS) has...

398

Scanned_Joint_Declaration_(Italian).pdf | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

JointDeclaration(Italian).pdf ScannedJointDeclaration(Italian).pdf ScannedJointDeclaration(Italian).pdf More Documents & Publications FTCP Face to Face Meeting - March 30,...

399

International Power Girasolar joint company | Open Energy Information  

Open Energy Info (EERE)

Girasolar joint company Jump to: navigation, search Name International Power Girasolar joint company Sector Solar Product Joint venture announced between US IPWG and...

400

Joint Outreach Task Group Former Workers Screening Program |...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Outreach Task Group Former Workers Screening Program Joint Outreach Task Group Former Workers Screening Program The Joint Outreach Task Group (JOTG) includes representatives...

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


401

2010_Nuclear_Security_Joint_Statement.pdf | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

NuclearSecurityJointStatement.pdf 2010NuclearSecurityJointStatement.pdf 2010NuclearSecurityJointStatement.pdf More Documents & Publications United States and France...

402

Genomics:GTL Contractor-Grantee Workshop IV and Metabolic Engineering Working Group Inter-Agency Conference on Metabolic Engineering 2006  

SciTech Connect

Welcome to the 2006 joint meeting of the fourth Genomics:GTL Contractor-Grantee Workshop and the six Metabolic Engineering Working Group Inter-Agency Conference. The vision and scope of the Genomics:GTL program continue to expand and encompass research and technology issues from diverse scientific disciplines, attracting broad interest and support from researchers at universities, DOE national laboratories, and industry. Metabolic engineering's vision is the targeted and purposeful alteration of metabolic pathways to improve the understanding and use of cellular pathways for chemical transformation, energy transduction, and supramolecular assembly. These two programs have much complementarity in both vision and technological approaches, as reflected in this joint workshop. GLT's challenge to the scientific community remains the further development and use of a broad array of innovative technologies and computational tools to systematically leverage the knowledge and capabilities brought to us by DNA sequencing projects. The goal is to seek a broad and predictive understanding of the functioning and control of complex systems--individual microbes, microbial communities, and plants. GTL's prominent position at the interface of the physical, computational, and biological sciences is both a strength and challenge. Microbes remain GTL's principal biological focus. In the complex 'simplicity' of microbes, they find capabilities needed by DOE and the nation for clean and secure energy, cleanup of environmental contamination, and sequestration of atmospheric carbon dioxide that contributes to global warming. An ongoing challenge for the entire GTL community is to demonstrate that the fundamental science conducted in each of your research projects brings us a step closer to biology-based solutions for these important national energy and environmental needs.

Mansfield, Betty Kay [ORNL; Martin, Sheryl A [ORNL

2006-02-01T23:59:59.000Z

403

Genomics:GTL Contractor-Grantee Workshop IV and Metabolic Engineering Working Group Inter-Agency Conference on Metabolic Engineering 2006  

SciTech Connect

Welcome to the 2006 joint meeting of the fourth Genomics:GTL Contractor-Grantee Workshop and the six Metabolic Engineering Working Group Inter-Agency Conference. The vision and scope of the Genomics:GTL program continue to expand and encompass research and technology issues from diverse scientific disciplines, attracting broad interest and support from researchers at universities, DOE national laboratories, and industry. Metabolic engineering's vision is the targeted and purposeful alteration of metabolic pathways to improve the understanding and use of cellular pathways for chemical transformation, energy transduction, and supramolecular assembly. These two programs have much complementarity in both vision and technological approaches, as reflected in this joint workshop. GLT's challenge to the scientific community remains the further development and use of a broad array of innovative technologies and computational tools to systematically leverage the knowledge and capabilities brought to us by DNA sequencing projects. The goal is to seek a broad and predictive understanding of the functioning and control of complex systems--individual microbes, microbial communities, and plants. GTL's prominent position at the interface of the physical, computational, and biological sciences is both a strength and challenge. Microbes remain GTL's principal biological focus. In the complex 'simplicity' of microbes, they find capabilities needed by DOE and the nation for clean and secure energy, cleanup of environmental contamination, and sequestration of atmospheric carbon dioxide that contributes to global warming. An ongoing challenge for the entire GTL community is to demonstrate that the fundamental science conducted in each of your research projects brings us a step closer to biology-based solutions for these important national energy and environmental needs.

Mansfield, Betty Kay [ORNL; Martin, Sheryl A [ORNL

2006-02-01T23:59:59.000Z

404

Data Management Group Joint Program in Transportation  

E-Print Network (OSTI)

Data Management Group Joint Program in Transportation University of Toronto System Access Request will the University of Toronto, the Joint Program in Transportation Data Management Group or any of its funding

Toronto, University of

405

Genome Sequence Databases (Overview): Sequencing and Assembly  

E-Print Network (OSTI)

complete microbial genome sequencing (you get what you payet al. (2005). Genome sequencing in open microfabricatedof problem solving in genome sequencing. Genome Research 8,

Lapidus, Alla L.

2009-01-01T23:59:59.000Z

406

Genome Analysis and Systems Modeling Group  

NLE Websites -- All DOE Office Websites (Extended Search)

(Microbial Genomes) Pipeline, Comprehensive Genome Analysis Pipeline Genome Channel, Java applet for the comprehensive sequence-based view of genomes. Grail, a tool for the...

407

JGI - Undergraduate Research in Functional Genomics  

NLE Websites -- All DOE Office Websites (Extended Search)

Education Microbial Genome Analysis Microbial Functional Genomics Undergraduate Research in Microbial Functional Genomics Genomics not only can answer questions about known genes,...

408

Optimization Online - Distributionally Robust Joint Chance ...  

E-Print Network (OSTI)

Aug 12, 2010 ... Abstract: We develop tractable semidefinite programming (SDP) based approximations for distributionally robust individual and joint chance ...

409

Alternative Transmission Technologies for Joint Planning Studies  

Science Conference Proceedings (OSTI)

This report describes a detailed analysis of joint transmission planning needs and capabilities, including an assessment of current research in the area. The report has value as a starting point and reference for transmission planners engaged in joint planning exercises because it focuses on technologies that could facilitate joint transmission planning of a bulk power grid. A joint planning exercise involves the collaboration of multiple transmission planning groups that may each have ...

2013-12-09T23:59:59.000Z

410

TMS/ASM Joint Distinguished Lectureship Award  

Science Conference Proceedings (OSTI)

Professional Honors and Awards Recipients of the TMS/ASM Joint Distinguished Lectureship Award. 2011, Subra Suresh. 2010, Mildred Dresselhaus.

411

University of Toronto Joint Program in Transportation  

E-Print Network (OSTI)

University of Toronto Joint Program in Transportation Data Management Group GTA A.M. PEAK HOUR ­ Notation page i University of Toronto Joint Program in Transportation Data Management Group Preface the joint efforts of transportation planning staff of the Regional Municipalities of York, Peel, Durham

Toronto, University of

412

Joint News Release ELEVENTH ITER NEGOTIATIONS MEETING  

E-Print Network (OSTI)

Joint News Release ELEVENTH ITER NEGOTIATIONS MEETING CHENGDU , CHINA, 24OCTOBER 2005 Delegations of America met in CHENGDU on 24October 2005 to continue their work to reach agreement on the joint the project and its procurements, and the continuing joint drafting of the agreement on establishing

413

JOINT PROGRAM IN TRANSPORTATION UNIVERSITY OF TORONTO  

E-Print Network (OSTI)

JOINT PROGRAM IN TRANSPORTATION UNIVERSITY OF TORONTO 2001 TRANSPORTATION TOMORROW SURVEY not to participate) #12;JOINT PROGRAM IN TRANSPORTATION UNIVERSITY OF TORONTO 2001 TRANSPORTATION TOMORROW SURVEY Survey Area 2001 only 1996 only 1996 and 2001 1986, 1991, 1996 and 2001 #12;JOINT PROGRAM

Toronto, University of

414

Evaluation of Medium-Voltage Cable Joints  

Science Conference Proceedings (OSTI)

This research is a continuation of work evaluating performance of state-of-the-art joints. Three single-phase cold shrink joints and three "I"-type premolded separable connector joints were evaluated. Two of the separable connectors were rated 600 A and one was rated 900 A; both were installed on ethylene propylene rubber (EPR) 15-kV cables.

2006-09-27T23:59:59.000Z

415

DOE Science Showcase - Carbon Capture research in DOE Databases...  

Office of Scientific and Technical Information (OSTI)

Sciences Division, DOE Office of Science DOE Key R&D Programs and Initiatives, DOE DOE Fossil Energy Techline, DOE What is carbon sequestration? NETL 2010 Carbon Sequestration...

416

DOE Policy on Decommissioning DOE Facilities Under CERCLA | Department...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

DOE Policy on Decommissioning DOE Facilities Under CERCLA DOE Policy on Decommissioning DOE Facilities Under CERCLA In May 1995, the Department of Energy (DOE) issued a policy in...

417

Joint interaction with embedded concretions: joint loading congurations inferred from propagation paths  

E-Print Network (OSTI)

Joint interaction with embedded concretions: joint loading con®gurations inferred from propagation The interaction between propagating joints and embedded concretions in a Devonian black shale near Seneca Lake, NY, permits identi®cation of the loading con®gurations responsible for two joint sets of dierent ages striking

Engelder, Terry

418

Spectrogram analysis of genomes  

Science Conference Proceedings (OSTI)

We perform frequency-domain analysis in the genomes of various organisms using tricolor spectrograms, identifying several types of distinct visual patterns characterizing specific DNA regions. We relate patterns and their frequency characteristics to ... Keywords: DNA spectrograms, frequency-domain analysis, genome analysis

David Sussillo; Anshul Kundaje; Dimitris Anastassiou

2004-01-01T23:59:59.000Z

419

Legume Crop Genomics  

Science Conference Proceedings (OSTI)

This book will present this technical theme in a manner that should help many readers answer the question, "What is genomics?" And finally, this book should help readers formulate an opinion on the question, "Why is genomic research needed?" Legume Crop Ge

420

Genomic analysis of mouse tumorigenesis  

E-Print Network (OSTI)

The availability of the human and mouse genome sequences has spurred a growing interest in analyzing mouse models of human cancer using genomic techniques. Comparative genomic studies on mouse and human tumors can be ...

Tam, Mandy Chi-Mun

2006-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


421

Enhancer Identification through Comparative Genomics  

E-Print Network (OSTI)

through Comparative Genomics Axel Visel, James Bristow andWalnut Creek, CA 94598 USA. Genomics Division, MS 84-171,Len A. Pennacchio, Genomics Division, One Cyclotron Road, MS

Visel, Axel; Bristow, James; Pennacchio, Len A.

2006-01-01T23:59:59.000Z

422

Genome Properties Database  

DOE Data Explorer (OSTI)

The Genome Properties system consists of a suite of "Properties" which are carefully defined attributes of prokaryotic organisms whose status can be described by numerical values or controlled vocabulary terms for individual completely sequenced genomes. Evaluation of these properties may take place via manual curation or by computer algorithms (numerical calculations or rules-based assignment of controlled vocabulary terms). The Genome Properties system has been designed to capture the widest possible range of attributes and currently encompasses taxonomic terms, genometric calculations, metabolic pathways, systems of interacting macromolecular components and quantitative and descriptive experimental observations (phenotypes) from the literature. Wherever possible, Genome Properties are linked to traceable lines of evidence and links are provided to data for any genes which are part of this evidence. The primary source of evidence linking genes to properties is homology modelling using Hidden Markov Models (HMMs) from the TIGRFAMs and Pfam databases. (Taken from the Genome Properties Home Page)(Specialized Interface)

Haft, Daniel H.; Selengut, Jeremy D.; Brinkac, Lauren M.; Zafar, Nikhat; White, Owen

423

Why sequence cyanobacteria (Synechocystis) transcriptome?  

NLE Websites -- All DOE Office Websites (Extended Search)

Principal Investigators: Konstantinos Mavrommatis, DOE Joint Genome Institute Program: CSP 2010 Home > Sequencing > Why sequence cyanobacteria (Synechocystis) transcriptome...

424

Metal-ceramic joint assembly  

DOE Patents (OSTI)

A metal-ceramic joint assembly in which a brazing alloy is situated between metallic and ceramic members. The metallic member is either an aluminum-containing stainless steel, a high chromium-content ferritic stainless steel or an iron nickel alloy with a corrosion protection coating. The brazing alloy, in turn, is either an Au-based or Ni-based alloy with a brazing temperature in the range of 9500 to 1200.degree. C.

Li, Jian (New Milford, CT)

2002-01-01T23:59:59.000Z

425

Hydraulic fracturing of jointed formations  

DOE Green Energy (OSTI)

Measured by volume, North America's largest hydraulic fracturing operations have been conducted at Fenton Hill, New Mexico to create geothermal energy reservoirs. In the largest operation 21,000 m/sup 3/ of water were injected into jointed granitic rock at a depth of 3.5 km. Microearthquakes induced by this injection were measured with geophones placed in five wells drilled into, or very close, to the reservoir, as well as 11 surface seismometers. The large volume of rock over which the microearthquakes were distributed indicates a mechanism of hydraulic stimulation which is at odds with conventional fracturing theory, which predicts failure along a plane which is perpendicular to the least compressive earth stress. A coupled rock mechanics/fluid flow model provides much of the explanation. Shear slippage along pre-existing joints in the rock is more easily induced than conventional tensile failure, particularly when the difference between minimum and maximum earth stresses is large and the joints are oriented at angles between 30 and 60 degrees to the principal earth stresses, and a low viscosity fluid like water is injected. Shear slippage results in local redistribution of stresses, which allows a branching, or dendritic, stimulation pattern to evolve, in agreement with the patterns of microearthquake locations. These results are qualitatively similar to the controversial process known as ''Kiel'' fracturing, in which sequential injections and shut-ins are repeated to create dendritic fractures for enhanced oil and gas recovery. However, we believe that the explanation is shear slippage of pre-existing joints and stress redistribution, not proppant bridging and fluid blocking as suggested by Kiel. 15 refs., 10 figs.

Murphy, H.D.; Fehler, M.C.

1986-01-01T23:59:59.000Z

426

Complete genome sequence of Serratia plymuthica strain AS12  

SciTech Connect

A plant associated member of the family Enterobacteriaceae, Serratia plymuthica strain AS12 was isolated from rapeseed roots. It is of scientific interest due to its plant growth promoting and plant pathogen inhibiting ability. The genome of S. plymuthica AS12 comprises a 5,443,009 bp long circular chromosome, which consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome was sequenced within the 2010 DOE-JGI Community Sequencing Program (CSP2010) as part of the project entitled 'Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens'.

Neupane, Saraswoti [Uppsala University, Uppsala, Sweden; Finlay, Roger D. [Uppsala University, Uppsala, Sweden; Alstrom, Sadhna [Uppsala University, Uppsala, Sweden; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Chertkov, Olga [Los Alamos National Laboratory (LANL); Han, James [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Hogberg, Nils [Uppsala University, Uppsala, Sweden

2012-01-01T23:59:59.000Z

427

Public key infrastructure for DOE security research  

SciTech Connect

This document summarizes the Department of Energy`s Second Joint Energy Research/Defence Programs Security Research Workshop. The workshop, built on the results of the first Joint Workshop which reviewed security requirements represented in a range of mission-critical ER and DP applications, discussed commonalties and differences in ER/DP requirements and approaches, and identified an integrated common set of security research priorities. One significant conclusion of the first workshop was that progress in a broad spectrum of DOE-relevant security problems and applications could best be addressed through public-key cryptography based systems, and therefore depended upon the existence of a robust, broadly deployed public-key infrastructure. Hence, public-key infrastructure ({open_quotes}PKI{close_quotes}) was adopted as a primary focus for the second workshop. The Second Joint Workshop covered a range of DOE security research and deployment efforts, as well as summaries of the state of the art in various areas relating to public-key technologies. Key findings were that a broad range of DOE applications can benefit from security architectures and technologies built on a robust, flexible, widely deployed public-key infrastructure; that there exists a collection of specific requirements for missing or undeveloped PKI functionality, together with a preliminary assessment of how these requirements can be met; that, while commercial developments can be expected to provide many relevant security technologies, there are important capabilities that commercial developments will not address, due to the unique scale, performance, diversity, distributed nature, and sensitivity of DOE applications; that DOE should encourage and support research activities intended to increase understanding of security technology requirements, and to develop critical components not forthcoming from other sources in a timely manner.

Aiken, R.; Foster, I.; Johnston, W.E. [and others

1997-06-01T23:59:59.000Z

428

Analyzing genomic data: understanding the genome  

Science Conference Proceedings (OSTI)

The effort that led to the sequencing of the human genome ushered life sciences into a new era. One of the largest international scientific endeavors of the time delivered the genetic makeup of our species to the research community. Further international ... Keywords: Algorithmic Development, Biological Data Mining, Data Mining Software Tools

Xosé M. Fernández-Suárez

2012-03-01T23:59:59.000Z

429

Joint Environmental Management System (EMS) Declaration of Conformance...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Services Environmental Management System Joint Environmental Management System (EMS) Declaration of Conformance Joint Environmental Management System (EMS) Declaration of...

430

Joint Report Issued by the U.S. Secretary of Energy and the Director of the  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Report Issued by the U.S. Secretary of Energy and the Joint Report Issued by the U.S. Secretary of Energy and the Director of the Russian Federation's Federal Atomic Energy Agency (Rosatom) Joint Report Issued by the U.S. Secretary of Energy and the Director of the Russian Federation's Federal Atomic Energy Agency (Rosatom) July 12, 2006 - 3:01pm Addthis WASHINGTON, DC - U.S. Department of Energy (DOE) Secretary Samuel Bodman announced today that he and Russian Federal Atomic Energy Agency Director Sergey Kiriyenko have submitted to Presidents Bush and Putin the third report of the Senior Interagency Working Group on implementation of the February 2005 Bratislava Checklist. "We have jointly agreed to maintain the aggressive timeline of prioritized repatriation of fresh and spent highly enriched uranium (HEU) fuel and

431

Malibu Joint Venture | Open Energy Information  

Open Energy Info (EERE)

Malibu Joint Venture Malibu Joint Venture Jump to: navigation, search Name Malibu Joint Venture Place Germany Sector Solar Product String representation "German utility ... e of next year." is too long. References Malibu Joint Venture[1] LinkedIn Connections CrunchBase Profile No CrunchBase profile. Create one now! This article is a stub. You can help OpenEI by expanding it. Malibu Joint Venture is a company located in Germany . References ↑ "Malibu Joint Venture" Retrieved from "http://en.openei.org/w/index.php?title=Malibu_Joint_Venture&oldid=348612" Categories: Clean Energy Organizations Companies Organizations Stubs What links here Related changes Special pages Printable version Permanent link Browse properties 429 Throttled (bot load) Error 429 Throttled (bot load)

432

JGI - FY2006 Sequencing for the DOE Microbial Genome Program  

NLE Websites -- All DOE Office Websites (Extended Search)

pickettii 12J 3.5 MB Rice endophyte metagenome 100 MB Schizophyllum commune 38 MB Shewanella halifaxensis HAW-EB4 5 MB Shewanella pealeana ATCC 700345 5 MB Shewanella sediminis...

433

Researchers Funded by the DOE "Genomes to Life" Program Achieve...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Secretary Abraham said. IBEA scientists have assembled more than 5,000 bases or building blocks of DNA to create a small artificial virus, a so-called phage that infects...

434

The Neftemash closed joint-stock company  

Science Conference Proceedings (OSTI)

The Neftemash closed joint-stock company was created from the VNIIneftemash Scientific Production Association in the privatization process in the country. Members of the Neftemash Co. are listed. This group of members determined the basic activities of the Neftemash Co. as a multifunctional scientific production complex for designing and manufacturing modern equipment for oil and gas production and refining. By having highly qualified specialists, modern enterprises, test experience, and production capacity, this company is the leading organization in Russia and the Commonwealth of Independent States (CIS) for supplying oil and gas enterprises with petroleum equipment. The Neftemash Co. designs and produces drilling, geological prospecting, and petroleum production equipment and instrumentation. It designs oil and gas refining equipment and petrochemical equipment, equipment for processing coal and liquid fuels, including integrated automated production lines. It does fundamental and applied research in materials science, welding, and corrosion protection for oil and gas production and refining equipment. It designs ecologically safe equipment complexes for drilling wells and refining oil and gas. To a significant extent the petroleum industry in Russia was developed from the activity of the All-Union Scientific Research, Design, and Construction Institute for Petroleum Machinery. Equipment designed by the institute was used to explore, develop, and exploit oil and gas fields of western Siberia, the far north, and other petroleum regions of the country.

Umanchik, N.P.

1995-07-01T23:59:59.000Z

435

JGI - Tanja Woyke  

NLE Websites -- All DOE Office Websites (Extended Search)

Tanja Woyke Igor Grigoriev Tanja Woyke, PhD Microbial Genomics Program Lead, DOE Joint Genome Institute Education Diploma in Biology, University of California,...

436

Structural Genomics | Biosciences Division  

NLE Websites -- All DOE Office Websites (Extended Search)

Chart Site Index Inside BIO BIO Safety About Argonne Midwest Center for Structural Genomics Andrzej Joachimiak Director Bldg: 202. Room: Q 118 E-mail: andrzejj@anl.gov Phone:...

437

DOE-1 USERS GUIDE  

E-Print Network (OSTI)

systems, etc. b. c. Run DOE-Ion each building design.ECONOMICS (It is assumed that DOE-l has already been run onthe baseline costs). vi. Run DOE-l vii. ECONOMICS report E03

Authors, Various

2011-01-01T23:59:59.000Z

438

Discovery of Genes and Genomes through Deep Metagenomic Sequencing of Cow Rumen (2010 JGI User Meeting)  

Science Conference Proceedings (OSTI)

Director Eddy Rubin on "Discovery of Genes and Genomes through Deep Metagenomic Sequencing of Cow Rumen" on March 25, 2010 at the 5th Annual DOE JGI User Meeting

Rubin, Eddy

2010-03-25T23:59:59.000Z

439

From Fjords to Open Seas: Ecological Genomics of Expanding Oxygen Minimum Zones (2010 JGI User Meeting)  

Science Conference Proceedings (OSTI)

Steven Hallam of the University of British Columbia talks "From Fjords to Open Seas: Ecological Genomics of Expanding Oxygen Minimum Zones" on March 24, 2010 at the 5th Annual DOE JGI User Meeting

Hallam, Steven

2010-03-24T23:59:59.000Z

440

Tackling the Triple-Threat Genome of Miscanthus x giganteus (2010 JGI User Meeting)  

Science Conference Proceedings (OSTI)

Steve Moose from the University of Illinois at Urbana-Champaign and the Energy Biosciences Institute on "Tackling the Triple-Threat Genome of Miscanthus x giganteus" on March 25, 2010 at the 5th Annual DOE JGI User Meeting

Moose, Steve

2010-03-25T23:59:59.000Z

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


441

Researching DOE Records  

Energy.gov (U.S. Department of Energy (DOE))

The Department of Energy (DOE) welcomes researchers interested in documenting the Department's history. Significant portions of DOE's records, including declassified materials on the nuclear...

442

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies  

E-Print Network (OSTI)

annotation and comparative genomics. Database (Oxford) 2009,et al. : Comparative genomics of the core and accessoryComparative genomics of the core and accessory genomes of 48

2013-01-01T23:59:59.000Z

443

NASA and DOE Collaborate on Dark Energy Research | U.S. DOE Office of  

Office of Science (SC) Website

8 » NASA and DOE 8 » NASA and DOE Collaborate on Dark Energy Research News Featured Articles 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 Science Headlines Presentations & Testimony News Archives Contact Information Office of Science U.S. Department of Energy 1000 Independence Ave., SW Washington, DC 20585 P: (202) 586-5430 11.19.08 NASA and DOE Collaborate on Dark Energy Research Print Text Size: A A A Subscribe FeedbackShare Page WASHINGTON, DC -- NASA and the U.S. Department of Energy (DOE) have signed a memorandum of understanding for the implementation of the Joint Dark Energy Mission, or JDEM. The mission will feature the first space-based observatory designed specifically to understand the nature of dark energy. Dark energy is a form of energy that pervades and dominates the universe.

444

Joint torsion of several commuting operators.  

E-Print Network (OSTI)

We introduce the notion of joint torsion for several commuting operators satisfying a Fredholm condition. This new secondary invariant takes values in the group of invertibles of a field. It is constructed by comparing determinants associated with different filtrations of a Koszul complex. Our notion of joint torsion generalizes the Carey-Pincus joint torsion of a pair of commuting Fredholm operators. As an example, under more restrictive invertibility assumptions, we show that the joint torsion recovers the multiplicative Lefschetz numbers. Furthermore, in the case of Toeplitz operators over the polydisc we provide a link between the joint torsion and the Cauchy integral formula. We will also consider the algebraic properties of the joint torsion. They include a cocycle property, a symmetry property, a triviality property and a multiplicativity property. The proof of these results relies on a quite general comparison theorem for vertical and horizontal torsion isomorphisms associated with certain diagrams of chain complexes.

Jens Kaad

445

DOE Data Explorer  

Office of Scientific and Technical Information (OSTI)

Subject Categories Browse DDE Content: Subject Categories Everything Numeric Data GenomeGenetics Data Interactive Data Maps Multimedia AnimationsSimulations FiguresData Plots...

446

DOE Data Explorer  

Office of Scientific and Technical Information (OSTI)

Organizations Browse DDE Content: SponsorFunding Organizations Everything Numeric Data GenomeGenetics Data Interactive Data Maps Multimedia AnimationsSimulations Figures...

447

DOE Data Explorer  

Office of Scientific and Technical Information (OSTI)

Data Types Browse DDE Content: Types of Data and Non-text Information Everything Numeric Data GenomeGenetics Data Interactive Data Maps Multimedia AnimationsSimulations Figures...

448

Bioenergy at DOE JGI  

NLE Websites -- All DOE Office Websites (Extended Search)

Advancing Alternative Energy Sources Soybeans: Translational Genomics for Clean Energy Corn: The Leading U.S. Fuel Ethanol Crop Switchgrass: Power Grass Brachypodium: Growing...

449

DOE Data Explorer - Search  

Office of Scientific and Technical Information (OSTI)

Search Results of Search Results for: Sort by Relevance Sort by Title Sort by Relevance Previous Next Everything Numeric Data GenomeGenetics Data Interactive Data Maps...

450

To: Joel Rubin/EE/DOE@DOE  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

'J| 'J| MaryBeth Zinmerman 0212212001 10:37 AM ',U To: Joel Rubin/EE/DOE@DOE cc: Nancy Jeffery/EE/DOE@DOE Subject: Old Chpt 2, new Chap 3 Can you work on answering the editor's questions on this? Forwarded by MaryBeth Zimmenman/EE/DOE on 22/2001 10:36 AM "'"- . . Michael York 02/21/2001 01:13 PM To: commcoll@aol.com cc: MaryBeth Zimmerman/EE/DOE@DOE Subject: Chapter 2 Joan, attached is the first chapter to edit. We will be sending you the next chapter as soon as it is available. If you have any questions, please call me at (202) 586-5669. Thanks! Michael York Chapter 2_Energy Impacts_2.16.01.d 22894 DOE024-0300 JOEL RUBIN 02/22/2001 03:00 PM To: Marybeth Zimmerman cc: Nancy Jeffery, Darrell Beschen/EE/DOE@DOE, Michael York Subject Chapter 2 Updates MBZ - This draft incorporates (in blue ink) updates based upon the comments from Joan. Ive deleted Joan's

451

NIST Joint Cloud and Big Data Workshop  

Science Conference Proceedings (OSTI)

NIST Joint Cloud and Big Data Workshop. Purpose: ... The second and third days of the workshop focused on the intersection of Cloud and Big Data. ...

2013-01-31T23:59:59.000Z

452

Joint Outreach Task Group Calendar: September 2013  

Energy.gov (U.S. Department of Energy (DOE))

Joint Outreach Task Group (JOTG)has created a monthly calendar of community events to facilitate interagency and community involvement in these events. September 2013

453

U.S.-Japan Joint Statement  

NLE Websites -- All DOE Office Websites (Extended Search)

Release August 7, 2003 2003817 STATEMENT BY PHILIP T. REEKER, DEPUTY SPOKESMAN Joint Statement of The United States and Japan on High-Level Consultations on Climate Change...

454

A ”JOINT+MARGINAL” APPROACH TO PARAMETRIC ...  

E-Print Network (OSTI)

the cost vector (of the objective function to optimize) are random variables with joint distribution ?, some bounds on the expected optimal value have been ...

455

High-temperature brazed ceramic joints  

DOE Patents (OSTI)

High-temperature joints formed from metallized ceramics are disclosed wherein the metal coatings on the ceramics are vacuum sputtered thereon.

Jarvinen, Philip O. (Amherst, NH)

1986-01-01T23:59:59.000Z

456

Joint minimization with alternating Bregman proximity operators  

E-Print Network (OSTI)

Dec 28, 2004 ... Joint minimization with alternating Bregman proximity operators. H. H. Bauschke (hbauschk ***at*** uoguelph.ca) P. L. Combettes (plc ***at*** ...

457

Collaborations and Joint R&D  

Collaborations and Joint R&D. R&D Collaborations Map. These stories highlight some of the ways Argonne has worked with industrial companies to improve processes ...

458

Joint Actinide Shock Physics Experimental Research | National...  

National Nuclear Security Administration (NNSA)

Home > About Us > Our Programs > Defense Programs > Office of Research, Development, Test Capabilities and Evaluation > Office of Research and Development > Facilities > Joint...

459

Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy April 23, 2012 - 2:25pm Addthis The governments of the United States of America and the Republic of Iraq reaffirmed their commitment to joint cooperation in the areas of oil production and export, natural gas, electricity, and critical energy infrastructure protection during the inaugural meeting of the Joint Coordinating Committee (JCC) on Energy on April 23, 2012. This meeting, held at the U.S. Department of Energy, was co-chaired by Iraqi Deputy Prime Minister for Energy Dr. Hussain Al Shahristani and U.S. Deputy Secretary of Energy Daniel Poneman and Special Envoy and Coordinator for International Energy Affairs at the U.S. Department of State Ambassador

460

Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy |  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy Joint Statement of the U.S.-Iraq Joint Coordinating Committee on Energy April 23, 2012 - 2:25pm Addthis The governments of the United States of America and the Republic of Iraq reaffirmed their commitment to joint cooperation in the areas of oil production and export, natural gas, electricity, and critical energy infrastructure protection during the inaugural meeting of the Joint Coordinating Committee (JCC) on Energy on April 23, 2012. This meeting, held at the U.S. Department of Energy, was co-chaired by Iraqi Deputy Prime Minister for Energy Dr. Hussain Al Shahristani and U.S. Deputy Secretary of Energy Daniel Poneman and Special Envoy and Coordinator for International Energy Affairs at the U.S. Department of State Ambassador

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


461

DOE-HDBK-1139/3-03 | Department of Energy  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

03 03 DOE-HDBK-1139/3-03 October 23, 2003 Chemical Management (Volume 3 of 3) This Department of Energy Handbook was prepared under the sponsorship of the joint Department of Energy (DOE)/Energy Facility Contractors Group (EFCOG) Chemical Safety Topical Committee (CSTC). It was prepared over a span of four years by the CSTC's Chemical User Safety and Health Requirements Roadmap team (the CUSHR team), consisting of representatives from several sites and DOE headquarters, chaired by Dr. Dave Quigley, Idaho National Engineering and Environmental Laboratory and co-chaired by Mr. James Morgan, Westinghouse Savannah River Company and Ms. Gail Kleiner, DOE/EH-52. DOE-HDBK-1139/3-03, Chemical Management ( Volume 3 of 3) More Documents & Publications DOE-HDBK-1139/3-2005

462

Genome-Facilitated Analyses of Geomicrobial Processes  

SciTech Connect

This project had the goal(s) of understanding the mechanism(s) of extracellular electron transport (EET) in the microbe Shewanella oneidensis MR-1, and a number of other strains and species in the genus Shewanella. The major accomplishments included sequencing, annotation, and analysis of more than 20 Shewanella genomes. The comparative genomics enabled the beginning of a systems biology approach to this genus. Another major contribution involved the study of gene regulation, primarily in the model organism, MR-1. As part of this work, we took advantage of special facilities at the DOE: e.g., the synchrotron radiation facility at ANL, where we successfully used this system for elemental characterization of single cells in different metabolic states (1). We began work with purified enzymes, and identification of partially purified enzymes, leading to initial characterization of several of the 42 c-type cytochromes from MR-1 (2). As the genome became annotated, we began experiments on transcriptome analysis under different conditions of growth, the first step towards systems biology (3,4). Conductive appendages of Shewanella, called bacterial nanowires were identified and characterized during this work (5, 11, 20,21). For the first time, it was possible to measure the electron transfer rate between single cells and a solid substrate (20), a rate that has been confirmed by several other laboratories. We also showed that MR-1 cells preferentially attach to cells at a given charge, and are not attracted, or even repelled by other charges. The interaction with the charged surfaces begins with a stimulation of motility (called electrokinesis), and eventually leads to attachment and growth. One of the things that genomics allows is the comparative analysis of the various Shewanella strains, which led to several important insights. First, while the genomes predicted that none of the strains looked like they should be able to degrade N-acetyl glucosamine (NAG), the monomer that makes up chitin, virtually all of the strains were in fact capable. This led to the discovery of a great many new genes involved with chitin and NAG metabolism (7). In a similar vein, a detailed study of the sugar utilization pathway revealed a major new insight into the regulation of sugar metabolism in this genus (19). Systems Biology and Comparative Genomics of the shewanellae: Several publications were put together describing the use of comparative genomics for analyses of the group Shewanella, and these were a logical culmination of our genomic-driven research (10,15,18). Eight graduate students received their Ph.D. degrees doing part of the work described here, and four postdoctoral fellows were supported. In addition, approximately 20 undergraduates took part in projects during the grant period.

Kenneth H. Nealson

2012-05-02T23:59:59.000Z

463

Approved DOE Technical Standards  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

approved-doe-technical-standards Forrestal Building approved-doe-technical-standards Forrestal Building 1000 Independence Avenue, SW Washington, DC 205851.800.dial.DOE en DOE-STD-1150-2013 http://energy.gov/hss/downloads/doe-std-1150-2013 doe-std-1150-2013" class="title-link">DOE-STD-1150-2013

464

Joint Institute for High Temperatures  

National Nuclear Security Administration (NNSA)

Joint Institute for High Temperatures of Russian Academy of Sciences Moscow Institute of Physics and Technology Extended title Extended title Excited state of warm dense matter or Exotic state of warm dense matter or Novel form of warm dense matter or New form of plasma Three sources of generation similarity: solid state density, two temperatures: electron temperature about tens eV, cold ions keep original crystallographic positions, but electron band structure and phonon dispersion are changed, transient but steady (quasi-stationary for a short time) state of non-equilibrium, uniform plasmas (no reference to non-ideality, both strongly and weakly coupled plasmas can be formed) spectral line spectra are emitted by ion cores embedded in plasma environment which influences the spectra strongly,

465

Biofluid lubrication for artificial joints  

E-Print Network (OSTI)

This research investigated biofluid lubrication related to artificial joints using tribological and rheological approaches. Biofluids studied here represent two categories of fluids, base fluids and nanostructured biofluids. Base fluids were studied through comparison of synthetic fluids (simulated body fluid and hyaluronic acid) as well as natural biofluids (from dogs, horses, and humans) in terms of viscosity and fluid shear stress. The nano-structured biofluids were formed using molecules having well-defined shapes. Understanding nano-structured biofluids leads to new ways of design and synthesis of biofluids that are beneficial for artificial joint performance. Experimental approaches were utilized in the present research. This includes basic analysis of biofluids’ property, such as viscosity, fluid shear stress, and shear rate using rheological experiments. Tribological investigation and surface characterization were conducted in order to understand effects of molecular and nanostructures on fluid lubrication. Workpiece surface structure and wear mechanisms were investigated using a scanning electron microscope and a transmission electron microscope. The surface topography was examined using a profilometer. The results demonstrated that with the adding of solid additives, such as crown ether or fullerene acted as rough as the other solids in the 3-body wear systems. In addition, the fullerene supplied low friction and low wear, which designates the lubrication purpose of this particular particle system. This dissertation is constructed of six chapters. The first chapter is an introduction to body fluids, as mentioned earlier. After Chapter II, it examines the motivation and approach of the present research, Chapter III discusses the experimental approaches, including materials, experimental setup, and conditions. In Chapter IV, lubrication properties of various fluids are discussed. The tribological properties and performance nanostructured biofluids are discussed in Chapter V, followed by summary and conclusions in Chapter VI.

Pendelton, Alice Mae

2008-12-01T23:59:59.000Z

466

JGI - Structural Genomics Program  

NLE Websites -- All DOE Office Websites (Extended Search)

Structural Genomics Program Structural Genomics Program The structural characterization of proteins of unknown function can be described as structural genomics, an approach in which structure determination by X-ray crystallography supplies key functional information. This is exemplified by studies of the carboxysome. The structures of the first carboxysome shell proteins (Kerfeld et al., Science 2005) confirmed earlier hypotheses that they are indeed the basic building blocks of the carboxysome shell; the quaternary structure and the higher order assemblies of the proteins in the crystals provided insight into how they assemble into shell facets. Likewise, our structure of the carboxysome component CsoS3 revealed that it was a member of the beta-carbonic family, despite having no detectable sequence homology at the level of primary structure

467

High temperature ceramic/metal joint structure  

DOE Patents (OSTI)

A high temperature turbine engine includes a hybrid ceramic/metallic rotor member having ceramic/metal joint structure. The disclosed joint is able to endure higher temperatures than previously possible, and aids in controlling heat transfer in the rotor member.

Boyd, Gary L. (Tempe, AZ)

1991-01-01T23:59:59.000Z

468

Genomics and Systems Biology  

NLE Websites -- All DOE Office Websites (Extended Search)

such as energy, agriculture, and environmental cleanup. Get Expertise Babetta Marrone Biofuels Program Manager Email Cheryl Kuske DOE BER Biological System Science Division...

469

UV Decontamination of MDA Reagents for Single Cell Genomics  

Science Conference Proceedings (OSTI)

Single cell genomics, the amplification and sequencing of genomes from single cells, can provide a glimpse into the genetic make-up and thus life style of the vast majority of uncultured microbial cells, making it an immensely powerful and increasingly popular tool. This is accomplished by use of multiple displacement amplification (MDA), which can generate billions of copies of a single bacterial genome producing microgram-range DNA required for shotgun sequencing. Here, we address a key challenge inherent to this approach and propose a solution for the improved recovery of single cell genomes. While DNA-free reagents for the amplification of a single cell genome are a prerequisite for successful single cell sequencing and analysis, DNA contamination has been detected in various reagents, which poses a considerable challenge. Our study demonstrates the effect of UV irradiation in efficient elimination of exogenous contaminant DNA found in MDA reagents, while maintaining Phi29 activity. Consequently, we also find that increased UV exposure to Phi29 does not adversely affect genome coverage of MDA amplified single cells. While additional challenges in single cell genomics remain to be resolved, the proposed methodology is relatively quick and simple and we believe that its application will be of high value for future single cell sequencing projects.

Lee, Janey; Tighe, Damon; Sczyrba, Alexander; Malmatrom, Rex; Clingenpeel, Scott; Malfatti, Stephanie; Rinke, Christian; Wang, Zhong; Stepanauskas, Ramunas; Cheng, Jan-Fang; Woyke, Tanja

2011-03-18T23:59:59.000Z

470

Fueling the Future with Fungal Genomics  

E-Print Network (OSTI)

et al. 2008. Fungal genome sequencing and bioenergy. FungalCullen D, et al. 2008. Genome sequencing and analysis of theand lessons learned from genome sequencing. Methods Enzymol.

Grigoriev, Igor V.

2011-01-01T23:59:59.000Z

471

Requirements and standards for organelle genome databases  

E-Print Network (OSTI)

to the complete genome sequencing of many other organisms (guide the transition from human genome sequencing to being a04334; and Phakopsora genome sequencing direct funding).

Boore, Jeffrey L.

2006-01-01T23:59:59.000Z

472

VISTA - computational tools for comparative genomics  

E-Print Network (OSTI)

tools for comparative genomics Kelly A. Frazer 1 , LiorBerkeley, CA, 94720 Genomics Division, Lawrence Berkeleymultiple comparative genomics tools and provides users with

Frazer, Kelly A.; Pachter, Lior; Poliakov, Alexander; Rubin, Edward M.; Dubchak, Inna

2004-01-01T23:59:59.000Z

473

Fueling the Future with Fungal Genomics  

E-Print Network (OSTI)

JW. 2010. China's fungal genomics initiative: a whitepaper.and Saccharomycotina. BMC Genomics. 8, 325. Bailly J,Harnessing ectomycorrhizal genomics for ecological insights.

Grigoriev, Igor V.

2011-01-01T23:59:59.000Z

474

Evolutionary Genomics of Life in (and from) the Sea  

E-Print Network (OSTI)

web Genomes Online NIH Genome Sequencing Input NIH GenomesAbstract High throughput genome sequencing centers that werefunding sources of genome sequencing in the United States,

Boore, Jeffrey L.

2009-01-01T23:59:59.000Z

475

Integrated Joint Actuator for Serpentine Robots  

E-Print Network (OSTI)

Abstract—Serpentine robots, also sometimes called “snake robots, ” are slender, multisegmented vehicles designed to provide greater mobility than conventional wheeled or tracked robots. Serpentine robots are typically comprised of three or more rigid segments connected by two or three degrees of freedom joints. The segments typically have powered wheels, tracks, or legs to propel the vehicle forward; the joints may be powered or unpowered. We have developed a joint actuator system that is highly optimized for use in serpentine robots. This article first presents an analysis of the particular requirements for joint actuators in serpentine robots. We then compare existing actuators against those requirements and show that pneumatic bellows are ideally suited for this application. Following this analysis, this paper introduces our fully functional, pneumatically operated actuation system that is efficiently integrated in the space occupied by a joint. This system,

Grzegorz Granosik; Johann Borenstein; Senior Member

2005-01-01T23:59:59.000Z

476

Mammalian comparative genomics and epigenomics  

E-Print Network (OSTI)

The human genome sequence can be thought of as an instruction manual for our species, written and rewritten over more than a billion of years of evolution. Taking a complete inventory of our genome, dissecting its genes ...

Mikkelsen, Tarjei Sigurd, 1978-

2009-01-01T23:59:59.000Z

477

DOE and NYSERDA Join in $7.1 Million Program to Demonstrate Advanced  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

DOE and NYSERDA Join in $7.1 Million Program to Demonstrate DOE and NYSERDA Join in $7.1 Million Program to Demonstrate Advanced Electric Energy Storage Devices DOE and NYSERDA Join in $7.1 Million Program to Demonstrate Advanced Electric Energy Storage Devices Two major energy storage projects to demonstrate advanced electric energy storage devices in New York State have been selected as part of a joint initiative between the Department of Energy's (DOE) Energy Storage Research Program and the New York State Energy Research and Development Authority(NYSERDA). DOE and NYSERDA Join in $7.1 Million Program to Demonstrate Advanced Electric Energy Storage Devices More Documents & Publications Projects Selected for Funding Under the Joint NYSERDA / DOE Energy Storage Initiative Energy Storage Systems 2007 Peer Review - Utility & Commercial Applications

478

United States-Japan Joint Nuclear Energy Action Plan | Department...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

United States-Japan Joint Nuclear Energy Action Plan United States-Japan Joint Nuclear Energy Action Plan An outline on the United States and Japan's joint nuclear energy action...

479

U.S.-Brazil Strategic Energy Dialogue Joint Report | Department...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Brazil Strategic Energy Dialogue Joint Report U.S.-Brazil Strategic Energy Dialogue Joint Report First Joint Report to Presidents on U.S.-Brazil Strategic Energy Dialogue.pdf More...

480

JGI - Ergonomics  

NLE Websites -- All DOE Office Websites (Extended Search)

Ergonomics at DOE JGI U.S. Department of Energy (DOE) Joint Genome Institute (JGI) Ergonomics Program aims to address ergonomics risks in the laboratories. Laboratory Ergonomics...

Note: This page contains sample records for the topic "doe joint genome" from the National Library of EnergyBeta (NLEBeta).
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481

Life Sciences & Genomics Division Diversity  

NLE Websites -- All DOE Office Websites (Extended Search)

Sciences & Genomics Diversity imagemap Workforce Diversity Action Plans title Diversity Committee Employment Opportunities Community Outreach Activities htmlempopps.html Read...

482

Sealed joint structure for electrochemical device  

DOE Patents (OSTI)

Several members make up a joint in a high-temperature electrochemical device, wherein the various members perform different functions. The joint is useful for joining multiple cells (generally tubular modules) of an electrochemical device to produce a multi-cell segment-in-series stack for a solid oxide fuel cell, for instance. The joint includes sections that bond the joining members to each other; one or more seal sections that provide gas-tightness, and sections providing electrical connection and/or electrical insulation between the various joining members. A suitable joint configuration for an electrochemical device has a metal joint housing, a first porous electrode, a second porous electrode, separated from the first porous electrode by a solid electrolyte, and an insulating member disposed between the metal joint housing and the electrolyte and second electrode. One or more brazes structurally and electrically connects the first electrode to the metal joint housing and forms a gas tight seal between the first electrode and the second electrode.

Tucker, Michael C; Jacobson, Craig P; De Jonghe, Lutgard C; Visco, Steven J

2013-05-21T23:59:59.000Z

483

Joint Summer School on "The Evolution and Impact of Microstructural Defects  

Office of Science (SC) Website

Joint Summer School on "The Evolution and Impact Joint Summer School on "The Evolution and Impact of Microstructural Defects on In-Reactor Material Response" Energy Frontier Research Centers (EFRCs) EFRCs Home Centers Research Science Highlights News & Events EFRC News EFRC Events DOE Announcements Publications Contact BES Home 11.08.10 Joint Summer School on "The Evolution and Impact of Microstructural Defects on In-Reactor Material Response" Print Text Size: A A A Subscribe FeedbackShare Page June 6 - 10, 2011 :: The International Summer School, "The Evolution and Impact of Microstructural Defects on In-Reactor Material Response", at Idaho National Laboratories will be sponsored by the Center for Materials Science of Nuclear Fuel (Idaho National Laboratory), the Center for Defect

484

Chu Announces Joint U.S.-China Building Efficiency MOU | Department of  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Chu Announces Joint U.S.-China Building Efficiency MOU Chu Announces Joint U.S.-China Building Efficiency MOU Chu Announces Joint U.S.-China Building Efficiency MOU July 16, 2009 - 12:00am Addthis BEIJING, CHINA - After touring the "America House," a U.S. designed demonstration of cutting edge "zero energy" building technology, U.S. Energy Secretary Steven Chu today announced a new agreement between the U.S. Department of Energy (DOE) and the Chinese Ministry of Urban-Rural Development (MOHURD) to foster collaboration and partnership in the development of improved, more efficient building designs as well as sustainable communities that rely on greater use of renewable energy. "Making buildings more efficient represents one of the greatest, and most immediate opportunities we have to create jobs, save money, save energy and

485

Joint Statement between U.S. Department of Energy and Republic of Korea's  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Joint Statement between U.S. Department of Energy and Republic of Joint Statement between U.S. Department of Energy and Republic of Korea's Ministry of Trade, Industry, and Energy Joint Statement between U.S. Department of Energy and Republic of Korea's Ministry of Trade, Industry, and Energy May 7, 2013 - 2:18pm Addthis NEWS MEDIA CONTACT (202) 586-4940 Acting Secretary of Energy Daniel B. Poneman and Mr. Yoon Sang-jick, Minister of Trade, Industry, and Energy (MOTIE) of the Republic of Korea, met on May 7, 2013, at the Department of Energy (DOE) headquarters in Washington, D.C., where they exchanged views on cooperation on a wide range of energy priorities. They noted the importance of clean energy technologies for energy security, economic competitiveness and sustainable growth while mitigating the effects of greenhouse gas emissions. Acting Secretary Poneman and

486

Joint Statement between U.S. Department of Energy and Japan's Ministry of  

NLE Websites -- All DOE Office Websites (Extended Search)

Joint Statement between U.S. Department of Energy and Japan's Joint Statement between U.S. Department of Energy and Japan's Ministry of Economy, Trade and Industry Joint Statement between U.S. Department of Energy and Japan's Ministry of Economy, Trade and Industry July 24, 2013 - 4:37pm Addthis News Media Contact (202) 586-4940 Japanese Minister of Economy, Trade and Industry, Toshimitsu Motegi, and U.S. Secretary of Energy, Ernest Moniz, met on July 24, 2013, in Washington, D.C. Both sides noted the central role played by the Department of Energy (DOE) and the Ministry of Economy, Trade and Industry (METI) in U.S.-Japan energy cooperation, particularly on energy security matters, civil nuclear energy and clean energy technology research and development (R&D). Both sides expressed their intent to continue strengthening

487

Chu Announces Joint U.S.-China Building Efficiency MOU | Department of  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Announces Joint U.S.-China Building Efficiency MOU Announces Joint U.S.-China Building Efficiency MOU Chu Announces Joint U.S.-China Building Efficiency MOU July 16, 2009 - 12:00am Addthis BEIJING, CHINA - After touring the "America House," a U.S. designed demonstration of cutting edge "zero energy" building technology, U.S. Energy Secretary Steven Chu today announced a new agreement between the U.S. Department of Energy (DOE) and the Chinese Ministry of Urban-Rural Development (MOHURD) to foster collaboration and partnership in the development of improved, more efficient building designs as well as sustainable communities that rely on greater use of renewable energy. "Making buildings more efficient represents one of the greatest, and most immediate opportunities we have to create jobs, save money, save energy and

488

U.S.-India Joint Clean Energy Research and Development Center | Department  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

U.S.-India Joint Clean Energy Research and Development Center U.S.-India Joint Clean Energy Research and Development Center U.S.-India Joint Clean Energy Research and Development Center Funding Opportunity Announcement Prospective applicants are reminded that applications should not be submitted through Grants.gov or FedConnect. All applications in response to this Funding Opportunity Announcement must be submitted via e-mail to: JCERDC@HQ.DOE.GOV (U.S.) and JCERDC@INDOUSSTF.ORG (India). Downloadable Forms 1. Application Instructions 2. SF-424 Application for Federal Assistance (includes Project/Performance Site Location(s) and Disclosure of Lobbying Activities Forms) - U.S. Applicants Only 3. SF-424A Budget Information - U.S. Applicants Only 4. Budget Justification (PMC 123.1) - U.S. Applicants Only 5. Budget Application Form - Indian Applicants Only

489

DOE Mentoring Program Guide  

Energy.gov (U.S. Department of Energy (DOE))

If you are interested in continuous learning and self-development, the DOE Mentoring Program is for you. This guide will provide you with general information regarding mentoring at DOE. Learning...

490

DOE MENTOR-PROTÉGÉ  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

goal , 52% small business subcontracting goal, and statutory socio-economic goals 2 HISTORY OF DOE MENTOR-PROTG PROGRAM June 9, 1995 The DOE Mentor Protg Program Initiative...

491

DOE MENTOR-PROTÉGÉ  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

goal, 52% small business subcontracting goal, and statutory socio-economic goal 2 HISTORY OF DOE MENTOR-PROTG PROGRAM June 9, 1995 The DOE Mentor Protg Program Initiative...

492

DOE Federal Quality Council  

NLE Websites -- All DOE Office Websites (Extended Search)

DOE Federal Quality Council Note: Membership can be updated without re-approval of the Charter Name Org. Location Email Phone Colette Broussard HSS GTN colette.broussard@hq.doe.gov...

493

DOE Data Explorer  

Office of Scientific and Technical Information (OSTI)

DDE Discovering data and non-text information in the Department of Energy DOE Data Explorer What's New About DDE DOE Data Centers OSTI's Data ID Service Featured Collection...

494

Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction  

DOE Green Energy (OSTI)

We report the complete genome of Thermofilum pendens, a deep-branching, hyperthermophilic member of the order Thermoproteales within the archaeal kingdom Crenarchaeota. T. pendens is a sulfur-dependent, anaerobic heterotroph isolated from a solfatara in Iceland. It is an extracellular commensal, requiring an extract of Thermoproteus tenax for growth, and the genome sequence reveals that biosynthetic pathways for purines, most amino acids, and most cofactors are absent. In fact T. pendens has fewer biosynthetic enzymes than obligate intracellular parasites, although it does not display other features common among obligate parasites and thus does not appear to be in the process of becoming a parasite. It appears that T. pendens has adapted to life in an environment rich in nutrients. T. pendens was known to utilize peptides as an energy source, but the genome reveals substantial ability to grow on carbohydrates. T. pendens is the first crenarchaeote and only the second archaeon found to have a transporter of the phosphotransferase system. In addition to fermentation, T. pendens may gain energy from sulfur reduction with hydrogen and formate as electron donors. It may also be capable of sulfur-independent growth on formate with formate hydrogenlyase. Additional novel features are the presence of a monomethylamine:corrinoid methyltransferase, the first time this enzyme has been found outside of Methanosarcinales, and a presenilin-related protein. Predicted highly expressed proteins do not include housekeeping genes, and instead include ABC transporters for carbohydrates and peptides, and CRISPR-associated proteins.

Kyrpides, Nikos; Anderson, Iain; Rodriguez, Jason; Susanti, Dwi; Porat, Iris; Reich, Claudia; Ulrich, Luke E.; Elkins, James G.; Mavromatis, Kostas; Lykidis, Athanasios; Kim, Edwin; Thompson, Linda S.; Nolan, Matt; Land, Miriam; Copeland, Alex; Lapidus, Alla; Lucas, Susan; Detter, Chris; Zhulin, Igor B.; Olsen, Gary J.; Whitman, William; Mukhopadhyay, Biswarup; Bristow, James; Kyrpides, Nikos

2008-01-01T23:59:59.000Z

495

United States and Japan Sign Joint Nuclear Energy Action Plan...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Japan Sign Joint Nuclear Energy Action Plan to Promote Nuclear Energy Cooperation United States and Japan Sign Joint Nuclear Energy Action Plan to Promote Nuclear Energy...

496

Enjoy The Benefits of Joint ASM/TMS Chapter Membership  

Science Conference Proceedings (OSTI)

Enjoy The Benefits of Joint ASM/TMS Chapter Membership. There are many benefits of being a part of the Joint ASM/TMS Student Program—scholarships, ...

497

EA-1945: Northern Mid-Columbia Joint Project; Grant, Douglas...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

5: Northern Mid-Columbia Joint Project; Grant, Douglas, and Chelan Counties, Washington EA-1945: Northern Mid-Columbia Joint Project; Grant, Douglas, and Chelan Counties,...

498

Second National Report for the Joint Convention on the Safety...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

Second National Report for the Joint Convention on the Safety of Spent Fuel Management and on the Safety of Radioactive Waste Management Second National Report for the Joint...

499

Fracture Mechanics of Solder Joint under Mechanical Fatigue  

Science Conference Proceedings (OSTI)

Structural similarities in solder joint used in these studies yet varying locations of cracking site suggest that fracture in solder joint is affected greatly by a subtle ...

500

United States -Japan Joint Nuclear Energy Action Plan | Department...  

Energy.gov (U.S. Department of Energy (DOE)) Indexed Site

United States -Japan Joint Nuclear Energy Action Plan United States -Japan Joint Nuclear Energy Action Plan President Bush of the United States and Prime Minister Koizumi of Japan...