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  1. Genomic Science | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Genomic Science Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Bioimaging Technology DOE Joint Genome Institute Structural Biology Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Climate and Environmental Sciences Division (CESD) Research Abstracts Searchable Archive of BER Highlights External link Facilities

  2. DOE Joint Genome Institute | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    DOE Joint Genome Institute Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Bioimaging Technology DOE Joint Genome Institute Structural Biology Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Climate and Environmental Sciences Division (CESD) Research Abstracts Searchable Archive of BER Highlights External link

  3. Structural Biology | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Structural Biology Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Bioimaging Technology DOE Joint Genome Institute Structural Biology Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Climate and Environmental Sciences Division (CESD) Research Abstracts Searchable Archive of BER Highlights External link

  4. Low Dose Radiation | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Radiobiology: Low Dose Radiation Research Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Genomic Science DOE Bioenergy Research Centers Bioimaging Technology DOE Joint Genome Institute Structural Biology Radiochemistry & Imaging Instrumentation Radiobiology: Low Dose Radiation Research DOE Human Subjects Protection Program Climate and Environmental Sciences Division (CESD) Research Abstracts Searchable Archive of BER Highlights

  5. Biological Systems Science Division (BSSD) | U.S. DOE Office...

    Office of Science (SC) Website

    microbes and microbial communities to plants and other ... to DOE missions in energy, climate, and the environment. The major objective of the program is to achieve ...

  6. Genome Science/Technologies

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genome Genome Science/Technologies Los Alamos using cutting-edge sequencing, finishing, and analysis, impact valuable genomic data. Srinivas Iyer Bioscience Group Leader Email Get Expertise David Bruce Bioscience Deputy Group Leader Email Momchilo Vuyisich Scientist Email Rebecca McDonald Bioscience Communications Email State-of-the art technology and extensive genomics expertise Protein research Read caption + Los Alamos National Laboratory graduate student, Patricia Langan, changes the

  7. Terrestrial Ecosystem Science | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Terrestrial Ecosystem Science Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Climate and Environmental Sciences Division (CESD) ARM Climate Research Facility Atmospheric System Research (ASR) Program Data Management Earth System Modeling (ESM) Program William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) Integrated Assessment of Global Climate Change Regional & Global Climate Modeling (RGCM) Program Subsurface

  8. Genome Science and Personalized Cancer Treatment

    ScienceCinema (OSTI)

    Gray, Joe

    2010-01-08

    August 4, 2009 Berkeley Lab lecture: Results from the Human Genome Project are enabling scientists to understand how individual cancers form and progress. This information, when combined with newly developed drugs, can optimize the treatment of individual cancers. Joe Gray, director of Berkeley Labs Life Sciences Division and Associate Laboratory Director for Life and Environmental Sciences, will focus on this approach, its promise, and its current roadblocks ? particularly with regard to breast cancer.

  9. Genome Science and Personalized Cancer Treatment

    SciTech Connect (OSTI)

    Gray, Joe

    2009-08-07

    August 4, 2009 Berkeley Lab lecture: Results from the Human Genome Project are enabling scientists to understand how individual cancers form and progress. This information, when combined with newly developed drugs, can optimize the treatment of individual cancers. Joe Gray, director of Berkeley Labs Life Sciences Division and Associate Laboratory Director for Life and Environmental Sciences, will focus on this approach, its promise, and its current roadblocks Ś particularly with regard to breast cancer.

  10. Genome Science and Personalized Cancer Treatment

    SciTech Connect (OSTI)

    Gray, Joe

    2009-08-04

    Summer Lecture Series 2009: Results from the Human Genome Project are enabling scientists to understand how individual cancers form and progress. This information, when combined with newly developed drugs, can optimize the treatment of individual cancers. Joe Gray, director of Berkeley Labs Life Sciences Division and Associate Laboratory Director for Life and Environmental Sciences, will focus on this approach, its promise, and its current roadblocks Ś particularly with regard to breast cancer.

  11. Climate and Environmental Sciences Division (CESD) | U.S. DOE Office of

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science (SC) Climate and Environmental Sciences Division (CESD) Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Climate and Environmental Sciences Division (CESD) ARM Climate Research Facility Atmospheric System Research (ASR) Program Data Management Earth System Modeling (ESM) Program William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) Integrated Assessment of Global Climate Change Regional & Global Climate

  12. Data Management | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Data Management Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Climate and Environmental Sciences Division (CESD) ARM Climate Research Facility Atmospheric System Research (ASR) Program Data Management Earth System Modeling (ESM) Program William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) Integrated Assessment of Global Climate Change Regional & Global Climate Modeling (RGCM) Program Subsurface Biogeochemical

  13. DOE Science Showcase - Genomics | OSTI, US Dept of Energy Office...

    Office of Scientific and Technical Information (OSTI)

    Image Credit: Office of Biological and Environmental Research, U.S. DOE Office of Science. ... DOE's Genomic Science Program research is conducted at national laboratories and ...

  14. ARM Climate Research Facility | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    ARM Climate Research Facility Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Climate and Environmental Sciences Division (CESD) ARM Climate Research Facility Atmospheric System Research (ASR) Program Data Management Earth System Modeling (ESM) Program William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) Integrated Assessment of Global Climate Change Regional & Global Climate Modeling (RGCM) Program Subsurface

  15. Atmospheric System Research (ASR) Program | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Atmospheric System Research (ASR) Program Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Climate and Environmental Sciences Division (CESD) ARM Climate Research Facility Atmospheric System Research (ASR) Program Data Management Earth System Modeling (ESM) Program William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) Integrated Assessment of Global Climate Change Regional & Global Climate Modeling (RGCM) Program

  16. Earth System Modeling (ESM) Program | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Earth System Modeling (ESM) Program Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Climate and Environmental Sciences Division (CESD) ARM Climate Research Facility Atmospheric System Research (ASR) Program Data Management Earth System Modeling (ESM) Program William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) Integrated Assessment of Global Climate Change Regional & Global Climate Modeling (RGCM) Program

  17. From Human Genome to Materials "Genome" | U.S. DOE Office of Science

    Office of Science (SC) Website

    (SC) From Human Genome to Materials "Genome" News News Home Featured Articles 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 Science Headlines Science Highlights Presentations & Testimony News Archives Communications and Public Affairs Contact Information Office of Science U.S. Department of Energy 1000 Independence Ave., SW Washington, DC 20585 P: (202) 586-5430 07.09.14 From Human Genome to Materials "Genome" Government initiative seeks to speed the

  18. William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) | U.S.

    Office of Science (SC) Website

    DOE Office of Science (SC) William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) Biological and Environmental Research (BER) BER Home About Research Biological Systems Science Division (BSSD) Climate and Environmental Sciences Division (CESD) ARM Climate Research Facility Atmospheric System Research (ASR) Program Data Management Earth System Modeling (ESM) Program William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) Integrated Assessment of Global Climate Change

  19. Genome Science and Personalized Cancer Treatment (LBNL Summer Lecture Series)

    SciTech Connect (OSTI)

    Gray, Joe

    2009-08-04

    Summer Lecture Series 2009: Results from the Human Genome Project are enabling scientists to understand how individual cancers form and progress. This information, when combined with newly developed drugs, can optimize the treatment of individual cancers. Joe Gray, director of Berkeley Labs Life Sciences Division and Associate Laboratory Director for Life and Environmental Sciences, will focus on this approach, its promise, and its current roadblocks Ś particularly with regard to breast cancer.

  20. Genome Science and Personalized Cancer Treatment (LBNL Summer Lecture Series)

    ScienceCinema (OSTI)

    Gray, Joe

    2011-04-28

    Summer Lecture Series 2009: Results from the Human Genome Project are enabling scientists to understand how individual cancers form and progress. This information, when combined with newly developed drugs, can optimize the treatment of individual cancers. Joe Gray, director of Berkeley Labs Life Sciences Division and Associate Laboratory Director for Life and Environmental Sciences, will focus on this approach, its promise, and its current roadblocks ? particularly with regard to breast cancer.

  1. Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum

    SciTech Connect (OSTI)

    Ditty, Jayna L.; Kvaal, Christopher A.; Goodner, Brad; Freyermuth, Sharyn K.; Bailey, Cheryl; Britton, Robert A.; Gordon, Stuart G.; Heinhorst, Sabine; Reed, Kelynne; Xu, Zhaohui; Sanders-Lorenz, Erin R.; Axen, Seth; Kim, Edwin; Johns, Mitrick; Scott, Kathleen; Kerfeld, Cheryl A.

    2011-08-01

    Undergraduate life sciences education needs an overhaul, as clearly described in the National Research Council of the National Academies publication BIO 2010: Transforming Undergraduate Education for Future Research Biologists. Among BIO 2010's top recommendations is the need to involve students in working with real data and tools that reflect the nature of life sciences research in the 21st century. Education research studies support the importance of utilizing primary literature, designing and implementing experiments, and analyzing results in the context of a bona fide scientific question in cultivating the analytical skills necessary to become a scientist. Incorporating these basic scientific methodologies in undergraduate education leads to increased undergraduate and post-graduate retention in the sciences. Toward this end, many undergraduate teaching organizations offer training and suggestions for faculty to update and improve their teaching approaches to help students learn as scientists, through design and discovery (e.g., Council of Undergraduate Research [www.cur.org] and Project Kaleidoscope [www.pkal.org]). With the advent of genome sequencing and bioinformatics, many scientists now formulate biological questions and interpret research results in the context of genomic information. Just as the use of bioinformatic tools and databases changed the way scientists investigate problems, it must change how scientists teach to create new opportunities for students to gain experiences reflecting the influence of genomics, proteomics, and bioinformatics on modern life sciences research. Educators have responded by incorporating bioinformatics into diverse life science curricula. While these published exercises in, and guidelines for, bioinformatics curricula are helpful and inspirational, faculty new to the area of bioinformatics inevitably need training in the theoretical underpinnings of the algorithms. Moreover, effectively integrating bioinformatics into

  2. *** CANCELED *** SCIENCE ON SATURDAY- "Finding a Needle in A (Genomic)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Haystack or How Can Computers Help Cure Cancer" | Princeton Plasma Physics Lab February 9, 2013, 9:30am Science On Saturday MBG Auditorium *** CANCELED *** SCIENCE ON SATURDAY- "Finding a Needle in A (Genomic) Haystack or How Can Computers Help Cure Cancer" Professor Olga G. Troyanskaya Lewis-Sigler Institute for Integrative Genomics & Department of Computer Science, Princeton University Science on Saturday is a series of lectures given by scientists, mathematicians, and

  3. Joint Genome Institute (JGI) | U.S. DOE Office of Science (SC)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Joint Genome Institute (JGI) Biological and Environmental Research (BER) BER Home About Research Facilities User Facilities Atmospheric Radiation Measurement Climate Research Facility (ARM) Environmental Molecular Sciences Laboratory (EMSL) Joint Genome Institute (JGI) Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) Community Resources Contact Information Biological and Environmental Research U.S. Department of Energy

  4. DOE Science Showcase - Genomics | OSTI, US Dept of Energy Office of

    Office of Scientific and Technical Information (OSTI)

    Scientific and Technical Information Genomics "DNA with Features," Image Credit: Office of Biological and Environmental Research, U.S. DOE Office of Science. Genomics is a scientific field focused on sequencing and analyzing genomes, the complete set of genetic material encoding the biological instructions for developing and maintaining an organism. Insights from genomic information are catalyzing an extraordinary transformation in our understanding of biological systems and how we

  5. Fungal Genomics Program Grigoriev, Igor 59 BASIC BIOLOGICAL SCIENCES...

    Office of Scientific and Technical Information (OSTI)

    and the environment, and to promote functional studies on a system level. Combining new sequencing technologies and comparative genomics tools, JGI is now leading the world...

  6. Large-Scale Sequencing: The Future of Genomic Sciences Colloquium

    SciTech Connect (OSTI)

    Margaret Riley; Merry Buckley

    2009-01-01

    Genetic sequencing and the various molecular techniques it has enabled have revolutionized the field of microbiology. Examining and comparing the genetic sequences borne by microbes - including bacteria, archaea, viruses, and microbial eukaryotes - provides researchers insights into the processes microbes carry out, their pathogenic traits, and new ways to use microorganisms in medicine and manufacturing. Until recently, sequencing entire microbial genomes has been laborious and expensive, and the decision to sequence the genome of an organism was made on a case-by-case basis by individual researchers and funding agencies. Now, thanks to new technologies, the cost and effort of sequencing is within reach for even the smallest facilities, and the ability to sequence the genomes of a significant fraction of microbial life may be possible. The availability of numerous microbial genomes will enable unprecedented insights into microbial evolution, function, and physiology. However, the current ad hoc approach to gathering sequence data has resulted in an unbalanced and highly biased sampling of microbial diversity. A well-coordinated, large-scale effort to target the breadth and depth of microbial diversity would result in the greatest impact. The American Academy of Microbiology convened a colloquium to discuss the scientific benefits of engaging in a large-scale, taxonomically-based sequencing project. A group of individuals with expertise in microbiology, genomics, informatics, ecology, and evolution deliberated on the issues inherent in such an effort and generated a set of specific recommendations for how best to proceed. The vast majority of microbes are presently uncultured and, thus, pose significant challenges to such a taxonomically-based approach to sampling genome diversity. However, we have yet to even scratch the surface of the genomic diversity among cultured microbes. A coordinated sequencing effort of cultured organisms is an appropriate place to begin

  7. Los Alamos Science: The Human Genome Project. Number 20, 1992

    SciTech Connect (OSTI)

    Cooper, N G; Shea, N

    1992-01-01

    This article provides a broad overview of the Human Genome Project, with particular emphasis on work being done at Los Alamos. It tries to emphasize the scientific aspects of the project, compared to the more speculative information presented in the popular press. There is a brief introduction to modern genetics, including a review of classic work. There is a broad overview of the Genome Project, describing what the project is, what are some of its major five-year goals, what are major technological challenges ahead of the project, and what can the field of biology, as well as society expect to see as benefits from this project. Specific results on the efforts directed at mapping chromosomes 16 and 5 are discussed. A brief introduction to DNA libraries is presented, bearing in mind that Los Alamos has housed such libraries for many years prior to the Genome Project. Information on efforts to do applied computational work related to the project are discussed, as well as experimental efforts to do rapid DNA sequencing by means of single-molecule detection using applied spectroscopic methods. The article introduces the Los Alamos staff which are working on the Genome Project, and concludes with brief discussions on ethical, legal, and social implications of this work; a brief glimpse of genetics as it may be practiced in the next century; and a glossary of relevant terms.

  8. Los Alamos Science: The Human Genome Project. Number 20, 1992

    DOE R&D Accomplishments [OSTI]

    Cooper, N. G.; Shea, N. eds.

    1992-01-01

    This document provides a broad overview of the Human Genome Project, with particular emphasis on work being done at Los Alamos. It tries to emphasize the scientific aspects of the project, compared to the more speculative information presented in the popular press. There is a brief introduction to modern genetics, including a review of classic work. There is a broad overview of the Genome Project, describing what the project is, what are some of its major five-year goals, what are major technological challenges ahead of the project, and what can the field of biology, as well as society expect to see as benefits from this project. Specific results on the efforts directed at mapping chromosomes 16 and 5 are discussed. A brief introduction to DNA libraries is presented, bearing in mind that Los Alamos has housed such libraries for many years prior to the Genome Project. Information on efforts to do applied computational work related to the project are discussed, as well as experimental efforts to do rapid DNA sequencing by means of single-molecule detection using applied spectroscopic methods. The article introduces the Los Alamos staff which are working on the Genome Project, and concludes with brief discussions on ethical, legal, and social implications of this work; a brief glimpse of genetics as it may be practiced in the next century; and a glossary of relevant terms.

  9. Applications of Genome-based Science in Shaping Citrus Industries of the World (JGI Seventh Annual User Meeting, 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Gmitter Jr, Fred [University of Florida

    2013-01-15

    Fred Gmitter from the University of Florida on "Applications of Genome-based Science in Shaping the Future of the World's Citrus Industries" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, California.

  10. Applications of Genome-based Science in Shaping Citrus Industries of the World (JGI Seventh Annual User Meeting, 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Gmitter Jr, Fred [University of Florida

    2012-03-21

    Fred Gmitter from the University of Florida on "Applications of Genome-based Science in Shaping the Future of the World's Citrus Industries" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, California.

  11. Genome Databases Get Faster, Bigger, Stronger | U.S. DOE Office of Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    (SC) Genome Databases Get Faster, Bigger, Stronger Biological and Environmental Research (BER) BER Home About Research Facilities Science Highlights Searchable Archive of BER Highlights External link Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) Community Resources Contact Information Biological and Environmental Research U.S. Department of Energy SC-23/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301)

  12. Assembling Complex Plant Genomes | U.S. DOE Office of Science...

    Office of Science (SC) Website

    Scientists from the Department of Energy's (DOE) Joint Genome Institute (JGI) teamed with other researchers to develop and test the POPSEQ approach on the barley genome. The plant ...

  13. LLNL's Big Science Capabilities Help Spur Over $796 Billion in U.S. Economic Activity Sequencing the Human Genome

    SciTech Connect (OSTI)

    Stewart, Jeffrey S.

    2015-07-28

    LLNLÔÇÖs successful history of taking on big science projects spans beyond national security and has helped create billions of dollars per year in new economic activity. One example is LLNLÔÇÖs role in helping sequence the human genome. Over $796 billion in new economic activity in over half a dozen fields has been documented since LLNL successfully completed this Grand Challenge.

  14. Standards in Genomic Science: An Open-Access Journal of the Genomic Standards Consortium (GSC8 Meeting)

    ScienceCinema (OSTI)

    Garrity, George

    2011-06-03

    George Garrity of Michigan State University talks about the GSC's open-access journal SIGS at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

  15. Genome To Life Report | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Genome To Life Report Biological and Environmental Research Advisory Committee (BERAC) BERAC Home Meetings Members Charges/Reports Current BERAC Charges Archive of BERAC Reports Charter .pdf file (135KB) BER Committees of Visitors Federal Advisory Committees BER Home Charges/Reports Genome To Life Report Print Text Size: A A A FeedbackShare Page DOE Genomes to Life Program Information External link BRINGING THE GENOME TO LIFE - Energy Related Biology in the New Genomic World - A New Research

  16. DOE Joint Genome Institute: A DOE Office of Science User Facility...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Institute About Us Phone Book Contact Us Search Our Science Our DOE Mission Areas DOE Bioenergy Research Centers Science Programs Science Highlights Scientists at JGI Our Projects...

  17. Genomic Advances to Improve Biomass for Biofuels (LBNL Science at the Theater)

    ScienceCinema (OSTI)

    Rokhsar, Daniel

    2011-04-28

    Lawrence Berkeley National Lab bioscientist Daniel Rokhsar discusses genomic advances to improve biomass for biofuels. He presented his talk Feb. 11, 2008 in Berkeley, California as part of Berkeley Lab's community lecture series. Rokhsar works with the U.S. Department of Energy's Joint Genome Institute and Berkeley Lab's Genomics Division.

  18. Whitehead Policy Symposium. The Human Genome Project: Science, law, and social change in the 21st century

    SciTech Connect (OSTI)

    Nichols, E.K.

    2000-02-17

    Advances in the biomedical sciences, especially in human genomics, will dramatically influence law, medicine, public health, and many other sectors of our society in the decades ahead. The public already senses the revolutionary nature of genomic knowledge. In the US and Europe, we have seen widespread discussions about genetic discrimination in health insurance; privacy issues raised by the proliferation of DNA data banks; the challenge of interpreting new DNA diagnostic tests; changing definitions of what it means to be healthy; and the science and ethics of cloning animals and human beings. The primary goal of the Whitehead/ASLME Policy Symposium was to provide a bridge between the research community and professionals, who were just beginning to grasp the potential impact of new genetic technologies on their fields. The ''Human Genome Project: Science, Law, and Social Change in the 21st Century'' initially was designed as a forum for 300-500 physicians, lawyers, consumers, ethicists, and scientists to explore the impact of new genetic technologies and prepare for the challenges ahead.

  19. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    science Science Stockpile Stewardship National Security National Competitiveness Fusion and Ignition Energy for the Future How to Make a Star Discovery Science Photon Science HAPLS

  20. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Science Cutting edge, multidisciplinary national-security science. News Releases Science Briefs Photos Picture of the Week Publications Social Media Videos Fact Sheets The thermal traits of a leaf, critical for photosynthesis, may be under strong evolutionary selection that occurs in response to environmental temperatures. Here a thermal leaf image details temperature variation, which greatly affects plant functions since temperature is closely linked to metabolic kinetics-the plant's

  1. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Science & Technology Images of Lab scientists and researchers at work. News Releases Science Briefs Photos Picture of the Week Publications Social Media Videos Fact Sheets PHOTOS BY TOPIC Careers Community Visitors Environment History Science The Lab Click thumbnails to enlarge. Photos arranged by most recent first, horizontal formats before vertical. See Flickr for more sizes and details. Astronomical simulation in the CAVE - 1 Astronomical simulation in the CAVE - 1 Scientist sees

  2. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Office of Science Office of Science ╬▓ ╬▓ * * * Office of Science ╬▒ ╬│ Office of * * * * * Office of Science Office of Science * ╬▒ * * Office of Science ╬▒ * * ╬╝ * * ╬▒ 287 115 10.59 32 ms 283 113 10.12 100 ms 279 111 10.38 0.17 s 271 107 9.35 1.2 s 267 105 SF 1.8 h 275 109 10.35 12 ms 289 115 10.31 520 ms 285 113 9.74/9.48 4.5 s 281 111 SF 1 s 287 115 10.59 32 ms 283 113 10.12 100 ms 279 111 10.38 0.17 s 07 5 s 275 109 10.35 12 ms 285 1 9.74/ 4.5 281 111 SF 1 s 288 115 10.48 171 ms 284 113

  3. science

    National Nuclear Security Administration (NNSA)

    through the Predictive Capability Framework (PCF). The PCF is a long-term integrated roadmap to guide the science, technology and engineering activities and Directed Stockpile...

  4. Genome Science/Technologies

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    structure, splice variants, small RNAs) Biofuel production (pond health, strain ... Heavy computation is handled through a grid engine cluster and a Lustre-based distributed ...

  5. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology Genomics and Systems Biology Los Alamos scientists perform research in functional genomics and structural genomics, and applications for such work cover diverse fields such as energy, agriculture, and environmental cleanup. Contact Us Babetta Marrone Biofuels Program Manager Email Cheryl Kuske DOE BER Biological System Science Division Program Manager Email Kirsten McCabe Emerging Threats Program Manager Email Rebecca McDonald Bioscience Communications Email "We

  6. National Laboratory] Basic Biological Sciences(59) Biological...

    Office of Scientific and Technical Information (OSTI)

    Achievements of structural genomics Terwilliger, Thomas C. Los Alamos National Laboratory Basic Biological Sciences(59) Biological Science Biological Science Abstract Not...

  7. Phytozome Comparative Plant Genomics Portal

    SciTech Connect (OSTI)

    Goodstein, David; Batra, Sajeev; Carlson, Joseph; Hayes, Richard; Phillips, Jeremy; Shu, Shengqiang; Schmutz, Jeremy; Rokhsar, Daniel

    2014-09-09

    The Dept. of Energy Joint Genome Institute is a genomics user facility supporting DOE mission science in the areas of Bioenergy, Carbon Cycling, and Biogeochemistry. The Plant Program at the JGI applies genomic, analytical, computational and informatics platforms and methods to: 1. Understand and accelerate the improvement (domestication) of bioenergy crops 2. Characterize and moderate plant response to climate change 3. Use comparative genomics to identify constrained elements and infer gene function 4. Build high quality genomic resource platforms of JGI Plant Flagship genomes for functional and experimental work 5. Expand functional genomic resources for Plant Flagship genomes

  8. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Wikipedia to forecast diseases November 13, 2014 Los Alamos research published in Public Library of Science LOS ALAMOS, N.M., Nov. 13, 2014-Scientists can now monitor and forecast diseases around the globe more effectively by analyzing views of Wikipedia articles, according to a team from Los Alamos National Laboratory. "A global disease-forecasting system will improve the way we respond to epidemics," scientist Sara Del Valle said. "In the same way we check the weather each

  9. Rapid genome resequencing of an atoxigenic strain of Aspergillus

    Office of Scientific and Technical Information (OSTI)

    de Barcelona, Bellaterra, Catalonia (Spain) 59 BASIC BIOLOGICAL SCIENCES fungal genomics; gene regulatory networks fungal genomics; gene regulatory networks In...

  10. Joint Genome Institute's Automation Approach and History

    SciTech Connect (OSTI)

    Roberts, Simon

    2006-07-05

    Department of Energy/Joint Genome Institute (DOE/JGI) collaborates with DOE national laboratories and community users, to advance genome science in support of the DOE missions of clean bio-energy, carbon cycling, and bioremediation.

  11. Genomic definition of species

    SciTech Connect (OSTI)

    Crkvenjakov, R.; Drmanac, R.

    1991-07-01

    The subject of this paper is the definition of species based on the assumption that genome is the fundamental level for the origin and maintenance of biological diversity. For this view to be logically consistent it is necessary to assume the existence and operation of the new law which we call genome law. For this reason the genome law is included in the explanation of species phenomenon presented here even if its precise formulation and elaboration are left for the future. The intellectual underpinnings of this definition can be traced to Goldschmidt. We wish to explore some philosophical aspects of the definition of species in terms of the genome. The point of proposing the definition on these grounds is that any real advance in evolutionary theory has to be correct in both its philosophy and its science.

  12. Biological Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Energy Science Engineering Science Environmental Science Fusion Science Math & Computer Science Nuclear Science Share Your Research NERSC Citations Home Science at...

  13. *** CANCELED *** SCIENCE ON SATURDAY- "Finding a Needle in A...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Professor Olga G. Troyanskaya Lewis-Sigler Institute for Integrative Genomics & Department of Computer Science, Princeton University Science on Saturday is a series of lectures ...

  14. Genomic Aspects of Research Involving Polyploid Plants

    SciTech Connect (OSTI)

    Yang, Xiaohan [ORNL; Ye, Chuyu [ORNL; Tschaplinski, Timothy J [ORNL; Wullschleger, Stan D [ORNL; Tuskan, Gerald A [ORNL

    2011-01-01

    Almost all extant plant species have spontaneously doubled their genomes at least once in their evolutionary histories, resulting in polyploidy which provided a rich genomic resource for evolutionary processes. Moreover, superior polyploid clones have been created during the process of crop domestication. Polyploid plants generated by evolutionary processes and/or crop domestication have been the intentional or serendipitous focus of research dealing with the dynamics and consequences of genome evolution. One of the new trends in genomics research is to create synthetic polyploid plants which provide materials for studying the initial genomic changes/responses immediately after polyploid formation. Polyploid plants are also used in functional genomics research to study gene expression in a complex genomic background. In this review, we summarize the recent progress in genomics research involving ancient, young, and synthetic polyploid plants, with a focus on genome size evolution, genomics diversity, genomic rearrangement, genetic and epigenetic changes in duplicated genes, gene discovery, and comparative genomics. Implications on plant sciences including evolution, functional genomics, and plant breeding are presented. It is anticipated that polyploids will be a regular subject of genomics research in the foreseeable future as the rapid advances in DNA sequencing technology create unprecedented opportunities for discovering and monitoring genomic and transcriptomic changes in polyploid plants. The fast accumulation of knowledge on polyploid formation, maintenance, and divergence at whole-genome and subgenome levels will not only help plant biologists understand how plants have evolved and diversified, but also assist plant breeders in designing new strategies for crop improvement.

  15. Building international genomics collaboration for global health security

    SciTech Connect (OSTI)

    Cui, Helen H.; Erkkila, Tracy; Chain, Patrick S. G.; Vuyisich, Momchilo

    2015-12-07

    Genome science and technologies are transforming life sciences globally in many ways and becoming a highly desirable area for international collaboration to strengthen global health. The Genome Science Program at the Los Alamos National Laboratory is leveraging a long history of expertise in genomics research to assist multiple partner nations in advancing their genomics and bioinformatics capabilities. The capability development objectives focus on providing a molecular genomics-based scientific approach for pathogen detection, characterization, and biosurveillance applications. The general approaches include introduction of basic principles in genomics technologies, training on laboratory methodologies and bioinformatic analysis of resulting data, procurement, and installation of next-generation sequencing instruments, establishing bioinformatics software capabilities, and exploring collaborative applications of the genomics capabilities in public health. Genome centers have been established with public health and research institutions in the Republic of Georgia, Kingdom of Jordan, Uganda, and Gabon; broader collaborations in genomics applications have also been developed with research institutions in many other countries.

  16. A Taste of Algal Genomes from the Joint Genome Institute

    SciTech Connect (OSTI)

    Kuo, Alan; Grigoriev, Igor

    2012-06-17

    Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and economic costs through toxic blooms, provide models for the study of symbiosis, photosynthesis, and eukaryotic evolution, and are candidate sources for bio-fuels; all of these research areas are part of the mission of DOE's Joint Genome Institute (JGI). To date JGI has sequenced, assembled, annotated, and released to the public the genomes of 18 species and strains of algae, sampling almost all of the major clades of photosynthetic eukaryotes. With more algal genomes currently undergoing analysis, JGI continues its commitment to driving forward basic and applied algal science. Among these ongoing projects are the pan-genome of the dominant coccolithophore Emiliania huxleyi, the interrelationships between the 4 genomes in the nucleomorph-containing Bigelowiella natans and Guillardia theta, and the search for symbiosis genes of lichens.

  17. Human Genome Program Image Gallery (from genomics.energy.gov)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    This collection contains approximately 240 images from the genome programs of DOE's Office of Science. The images are divided into galleries related to biofuels research, systems biology, and basic genomics. Each image has a title, a basic citation, and a credit or source. Most of the images are original graphics created by the Genome Management Information System (GMIS). GMIS images are recognizable by their credit line. Permission to use these graphics is not needed, but please credit the U.S. Department of Energy Genome Programs and provide the website http://genomics.energy.gov. Other images were provided by third parties and not created by the U.S. Department of Energy. Users must contact the person listed in the credit line before using those images. The high-resolution images can be downloaded.

  18. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology Genomics and Systems Biology Los Alamos scientists perform research in functional genomics and structural genomics, and applications for such work ...

  19. Genome Engineering

    SciTech Connect (OSTI)

    Voytas, Dan

    2014-03-20

    Dan Voytas, University of Minnesota, at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif

  20. INTEGRATED GENOME-BASED STUDIES OF SHEWANELLA ECOPHYSIOLOGY TIEDJE...

    Office of Scientific and Technical Information (OSTI)

    BIOLOGICAL SCIENCES The aim of the work reported is to study Shewanella population genomics, and to understand the evolution, ecophysiology, and speciation of Shewanella. The...

  1. Rapid genome resequencing of an atoxigenic strain of Aspergillus...

    Office of Scientific and Technical Information (OSTI)

    United States Language: English Subject: 59 BASIC BIOLOGICAL SCIENCES fungal genomics; gene regulatory networks Word Cloud More Like This Free Publicly Accessible Full...

  2. Today, DOE's Joint Genome Institute (a

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    1 612011 6.2 Decoding the Human Genome Scientists are close to completing the genetic blueprint for a human being, thanks in large part to Office of Science funding. DOE was the ...

  3. Genome Analyses and Supplement Data from the International Populus Genome Consortium (IPGC)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    International Populus Genome Consortium (IPGC)

    The sequencing of the first tree genome, that of Populus, was a project initiated by the Office of Biological and Environmental Research in DOEĺs Office of Science. The International Populus Genome Consortium (IPGC) was formed to help develop and guide post-sequence activities. The IPGC website, hosted at the Oak Ridge National Laboratory, provides draft sequence data as it is made available from DOE Joint Genome Institute, genome analyses for Populus, lists of related publications and resources, and the science plan. The data are available at http://www.ornl.gov/sci/ipgc/ssr_resource.htm.

  4. Genome Analyses and Supplement Data from the International Populus Genome Consortium (IPGC)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    International Populus Genome Consortium (IPGC)

    The sequencing of the first tree genome, that of Populus, was a project initiated by the Office of Biological and Environmental Research in DOEÔÇÖs Office of Science. The International Populus Genome Consortium (IPGC) was formed to help develop and guide post-sequence activities. The IPGC website, hosted at the Oak Ridge National Laboratory, provides draft sequence data as it is made available from DOE Joint Genome Institute, genome analyses for Populus, lists of related publications and resources, and the science plan. The data are available at http://www.ornl.gov/sci/ipgc/ssr_resource.htm.

  5. Stories of Discovery & Innovation: From Human Genome to Materials "Genome"

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    | U.S. DOE Office of Science (SC) From Human Genome to Materials "Genome" Energy Frontier Research Centers (EFRCs) EFRCs Home Centers Research Science Highlights News & Events EFRC News EFRC Events DOE Announcements Publications History Contact BES Home 07.09.14 Stories of Discovery & Innovation: From Human Genome to Materials "Genome" Print Text Size: A A A Subscribe FeedbackShare Page Government initiative seeks to speed the pace of materials discovery and

  6. Life sciences and environmental sciences

    SciTech Connect (OSTI)

    Not Available

    1992-02-01

    The DOE laboratories play a unique role in bringing multidisciplinary talents -- in biology, physics, chemistry, computer sciences, and engineering -- to bear on major problems in the life and environmental sciences. Specifically, the laboratories utilize these talents to fulfill OHER`s mission of exploring and mitigating the health and environmental effects of energy use, and of developing health and medical applications of nuclear energy-related phenomena. At Lawrence Berkeley Laboratory (LBL) support of this mission is evident across the spectrum of OHER-sponsored research, especially in the broad areas of genomics, structural biology, basic cell and molecular biology, carcinogenesis, energy and environment, applications to biotechnology, and molecular, nuclear and radiation medicine. These research areas are briefly described.

  7. Life sciences and environmental sciences

    SciTech Connect (OSTI)

    Not Available

    1992-02-01

    The DOE laboratories play a unique role in bringing multidisciplinary talents -- in biology, physics, chemistry, computer sciences, and engineering -- to bear on major problems in the life and environmental sciences. Specifically, the laboratories utilize these talents to fulfill OHER's mission of exploring and mitigating the health and environmental effects of energy use, and of developing health and medical applications of nuclear energy-related phenomena. At Lawrence Berkeley Laboratory (LBL) support of this mission is evident across the spectrum of OHER-sponsored research, especially in the broad areas of genomics, structural biology, basic cell and molecular biology, carcinogenesis, energy and environment, applications to biotechnology, and molecular, nuclear and radiation medicine. These research areas are briefly described.

  8. Microbial Genomics Data from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    The JGI makes high-quality genome sequencing data freely available to the greater scientific community through its web portal. Having played a significant role in the federally funded Human Genome Project -- generating the complete sequences of Chromosomes 5, 16, and 19--the JGI has now moved on to contributing in other critical areas of genomics research. While NIH-funded genome sequencing activities continue to emphasize human biomedical targets and applications, the JGI has since shifted its focus to the non-human components of the biosphere, particularly those relevant to the science mission of the Department of Energy. With efficiencies of scale established at the PGF, and capacity now exceeding three billion bases generated on a monthly basis, the JGI has tackled scores of additional genomes. These include more than 60 microbial genomes and many important multicellular organisms and communities of microbes. In partnership with other federal institutions and universities, the JGI is in the process of sequencing a frog (Xenopus tropicalis), a green alga (Chlamydomonas reinhardtii), a diatom (Thalassiosira pseudonana) , the cottonwood tree (Populus trichocarpa), and a host of agriculturally important plants and plant pathogens. Microorganisms, for example those that thrive under extreme conditions such as high acidity, radiation, and metal contamination, are of particular interest to the DOE and JGI. Investigations by JGI and its partners are shedding light on the cellular machinery of microbes and how they can be harnessed to clean up contaminated soil or water, capture carbon from the atmosphere, and produce potentially important sources of energy such as hydrogen and methane. [Excerpt from the JGI page "Who We Are" at http://www.jgi.doe.gov/whoweare/whoweare.html] From the JGI webportal users can view a photo grid of organisims, check assemblies for status, access the Integrated Microbial Genomes (IMG) system to do comparative analysis of publicly available

  9. Fueling the Future with Fungal Genomes

    SciTech Connect (OSTI)

    Grigoriev, Igor V.

    2014-10-27

    Genomes of fungi relevant to energy and environment are in focus of the JGI Fungal Genomic Program. One of its projects, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts and pathogens) and biorefinery processes (cellulose degradation and sugar fermentation) by means of genome sequencing and analysis. New chapters of the Encyclopedia can be opened with user proposals to the JGI Community Science Program (CSP). Another JGI project, the 1000 fungal genomes, explores fungal diversity on genome level at scale and is open for users to nominate new species for sequencing. Over 400 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics will lead to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such ÔÇśpartsÔÇÖ suggested by comparative genomics and functional analysis in these areas are presented here.

  10. January 23, 2016: Science on Saturday: Using Physics and Chemistry...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    23, 2016 - 09:30 January 23, 2016: Science on Saturday: Using Physics and Chemistry to Understand the Genome PPPL, MBG Auditorium Speaker: Professor Mary Jo Ondrechen Northeastern...

  11. 11th Annual Energy Department Joint Genome Institute Genomics...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    11th Annual Energy Department Joint Genome Institute Genomics of Energy & Environment Meeting 11th Annual Energy Department Joint Genome Institute Genomics of Energy & Environment ...

  12. BER Science Network Requirements

    SciTech Connect (OSTI)

    Alapaty, Kiran; Allen, Ben; Bell, Greg; Benton, David; Brettin, Tom; Canon, Shane; Dart, Eli; Cotter, Steve; Crivelli, Silvia; Carlson, Rich; Dattoria, Vince; Desai, Narayan; Egan, Richard; Tierney, Brian; Goodwin, Ken; Gregurick, Susan; Hicks, Susan; Johnston, Bill; de Jong, Bert; Kleese van Dam, Kerstin; Livny, Miron; Markowitz, Victor; McGraw, Jim; McCord, Raymond; Oehmen, Chris; Regimbal, Kevin; Shipman, Galen; Strand, Gary; Flick, Jeff; Turnbull, Susan; Williams, Dean; Zurawski, Jason

    2010-11-01

    The Energy Sciences Network (ESnet) is the primary provider of network connectivity for the US Department of Energy Office of Science, the single largest supporter of basic research in the physical sciences in the United States. In support of the Office of Science programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs that it serves. This focus has helped ESnet to be a highly successful enabler of scientific discovery for over 20 years. In April 2010 ESnet and the Office of Biological and Environmental Research, of the DOE Office of Science, organized a workshop to characterize the networking requirements of the science programs funded by BER. The requirements identified at the workshop are summarized and described in more detail in the case studies and the Findings section. A number of common themes emerged from the case studies and workshop discussions. One is that BER science, like many other disciplines, is becoming more and more distributed and collaborative in nature. Another common theme is that data set sizes are exploding. Climate Science in particular is on the verge of needing to manage exabytes of data, and Genomics is on the verge of a huge paradigm shift in the number of sites with sequencers and the amount of sequencer data being generated.

  13. Science and Science Fiction

    ScienceCinema (OSTI)

    Scherrer, Robert [Vanderbilt University, Nashville, Tennessee, United States

    2009-09-01

    I will explore the similarities and differences between the process of writing science fiction and the process of 'producing' science, specifically theoretical physics. What are the ground rules for introducing unproven new ideas in science fiction, and how do they differ from the corresponding rules in physics? How predictive is science fiction? (For that matter, how predictive is theoretical physics?) I will also contrast the way in which information is presented in science fiction, as opposed to its presentation in scientific papers, and I will examine the relative importance of ideas (as opposed to the importance of the way in which these ideas are presented). Finally, I will discuss whether a background as a research scientist provides any advantage in writing science fiction.

  14. Eukaryotic Genomics Data from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    The JGI makes high-quality genome sequencing data freely available to the greater scientific community through its web portal. Having played a significant role in the federally funded Human Genome Project -- generating the complete sequences of Chromosomes 5, 16, and 19--the JGI has now moved on to contributing in other critical areas of genomics research. While NIH-funded genome sequencing activities continue to emphasize human biomedical targets and applications, the JGI has since shifted its focus to the non-human components of the biosphere, particularly those relevant to the science mission of the Department of Energy. With efficiencies of scale established at the PGF, and capacity now exceeding three billion bases generated on a monthly basis, the JGI has tackled scores of additional genomes. These include more than 60 microbial genomes and many important multicellular organisms and communities of microbes. In partnership with other federal institutions and universities, the JGI is in the process of sequencing a frog (Xenopus tropicalis), a green alga (Chlamydomonas reinhardtii), a diatom (Thalassiosira pseudonana) , the cottonwood tree (Populus trichocarpa), and a host of agriculturally important plants and plant pathogens. Microorganisms, for example those that thrive under extreme conditions such as high acidity, radiation, and metal contamination, are of particular interest to the DOE and JGI. Investigations by JGI and its partners are shedding light on the cellular machinery of microbes and how they can be harnessed to clean up contaminated soil or water, capture carbon from the atmosphere, and produce potentially important sources of energy such as hydrogen and methane. [Excerpt from the JGI page "Who We Are" at http://www.jgi.doe.gov/whoweare/whoweare.html] From the JGI webportal users can choose Eukaryotic genomes from a photo list, access the JGI FTP directories to download data files, use the Tree of Life navigation tool, or choose a genome and go

  15. Science Briefs

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Briefs Science Briefs Read in detail about specific Los Alamos science achievements, and the honors our scientists are accruing. Science Briefs - 2016┬╗ Science Briefs - 2015┬╗ Science Briefs - 2014┬╗ Science Briefs - 2013┬╗ Science Briefs - 2012┬╗ Science Briefs - 2011┬╗ Elizabeth Kelly Kelly named Fellow of the American Statistical Association The American Statistical Association (ASA) has honored Elizabeth Kelly with the title of Fellow. - 8/2/16 Beverly Aikin, left, and Ellen Cerreta

  16. MycoCosm, an Integrated Fungal Genomics Resource Shabalov, Igor...

    Office of Scientific and Technical Information (OSTI)

    Resource Shabalov, Igor; Grigoriev, Igor 59 BASIC BIOLOGICAL SCIENCES MycoCosm is a web-based interactive fungal genomics resource, which was first released in March 2010, in...

  17. *** CANCELLED *** Using Physics to Understand the Genome | Princeton Plasma

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Physics Lab 4, 2015, 9:30am to 11:00am Science On Saturday MBG Auditorium *** CANCELLED *** Using Physics to Understand the Genome Professor Mary Jo Ondrechen, Department of Chemistry and Chemical Biology Northeastern University Abstract: PDF icon Ondrechen.pdf Sorry, Science On Saturday fans: lecture cancelled due to inclement weather. Contact Information Website: Science on Saturday Coordinator(s): Deedee Ortiz-Arias, Science Education Department Program Administraor dortiz@pppl.gov

  18. Building international genomics collaboration for global health security

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Cui, Helen H.; Erkkila, Tracy; Chain, Patrick S. G.; Vuyisich, Momchilo

    2015-12-07

    Genome science and technologies are transforming life sciences globally in many ways and becoming a highly desirable area for international collaboration to strengthen global health. The Genome Science Program at the Los Alamos National Laboratory is leveraging a long history of expertise in genomics research to assist multiple partner nations in advancing their genomics and bioinformatics capabilities. The capability development objectives focus on providing a molecular genomics-based scientific approach for pathogen detection, characterization, and biosurveillance applications. The general approaches include introduction of basic principles in genomics technologies, training on laboratory methodologies and bioinformatic analysis of resulting data, procurement, and installationmore┬á┬╗ of next-generation sequencing instruments, establishing bioinformatics software capabilities, and exploring collaborative applications of the genomics capabilities in public health. Genome centers have been established with public health and research institutions in the Republic of Georgia, Kingdom of Jordan, Uganda, and Gabon; broader collaborations in genomics applications have also been developed with research institutions in many other countries.┬ź┬áless

  19. A GSC Global Genome Census (GSC8 Meeting)

    ScienceCinema (OSTI)

    Kyrpides, Nikos [DOE JGI

    2011-04-29

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Nikos Kyrpides of the DOE Joint Genome Institute discusses the notion of a global genome census at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

  20. Genomic Sequence Comparisons, 1987-2003 Final Report

    SciTech Connect (OSTI)

    George M. Church

    2004-07-29

    This project was to develop new DNA sequencing and RNA and protein quantitation methods and related genome annotation tools. The project began in 1987 with the development of multiplex sequencing (published in Science in 1988), and one of the first automated sequencing methods. This lead to the first commercial genome sequence in 1994 and to the establishment of the main commercial participants (GTC then Agencourt) in the public DOE/NIH genome project. In collaboration with GTC we contributed to one of the first complete DOE genome sequences, in 1997, that of Methanobacterium thermoautotropicum, a species of great relevance to energy-rich gas production.

  1. JGI Fungal Genomics Program

    SciTech Connect (OSTI)

    Grigoriev, Igor V.

    2011-03-14

    Genomes of energy and environment fungi are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 50 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such 'parts' suggested by comparative genomics and functional analysis in these areas are presented here

  2. Genomic Encyclopedia of Fungi

    SciTech Connect (OSTI)

    Grigoriev, Igor

    2012-08-10

    Genomes of fungi relevant to energy and environment are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 150 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such parts suggested by comparative genomics and functional analysis in these areas are presented here.

  3. Science Highlights

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Highlights Science Highlights Print Science Highlights Featured scientific research based on publications resulting from work done at the ALS. Highlights are nominated by management and beamline scientists for their scientific significance. Current highlights (2004-present), highlight archives (1995-2004), and Summary Slides of ALS Science Highlights are also available. Science Briefs Short reports on recent research submitted by ALS beamline scientists and users. Science Caf├ęs Informal

  4. Detection Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Chemistry for Measurement and Detection Science Chemistry for Measurement and Detection Science Project Description Chemistry used in measurement and detection science plays a crucial role in the Laboratory's Science of Signatures scientific thrust. Measurement and detection science areas that require chemistry include nuclear and radiological, materials, biological, energy, climate, and space. Los Alamos scientists integrate chemical-science capabilities to ensure that the Laboratory can

  5. Materials Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Materials Science Materials Science National security depends on science and technology. The United States relies on Los Alamos National Laboratory for the best of both. No place on Earth pursues a broader array of world-class scientific endeavors. Materials Physics and Applications┬╗ Materials Science and Technology┬╗ Institute for Materials Science┬╗ Materials Science Rob Dickerson uses a state-of-the-art transmission electron microscope at the Electron Microscopy Laboratory managed by Los

  6. Computer Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Cite Seer Department of Energy provided open access science research citations in chemistry, physics, materials, engineering, and computer science IEEE Xplore Full text...

  7. Accelerating Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Accelerating Science with the NERSC Burst Buffer Early User Program Wahid Bhimji , ... Early User Program, focused on real science applications and workflows that can ...

  8. ARM - Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Atmospheric System Research (ASR) Earth System Modeling Regional & Global Climate Modeling Terrestrial Ecosystem Science Performance Metrics User Meetings Past ARM Science Team ...

  9. Nuclear Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nuclear Science Nuclear Science Experimental and theoretical nuclear research carried out at NERSC is driven by the quest for improving our understanding of the building blocks of...

  10. Science Gateways

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    About Science Gateways A science gateway is a web-based interface to access HPC computers ... perform shared computations, and generally interact with NERSC resources over the web. ...

  11. Accelerator Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Accelerator Science Accelerator Science ReframAccelerator.jpg Particle accelerators are among the largest, most complex, and most important scientific instruments in the world....

  12. Defining Genome Project Standards in a New Era of Sequencing (GSC8 Meeting)

    ScienceCinema (OSTI)

    Chain, Patrick [DOE JGI

    2011-04-28

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego.

  13. Is sustainability science really a science?

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Is sustainability science really a science? Is sustainability science really a science? The team's work shows that although sustainability science has been growing explosively ...

  14. Science On Saturday Archive | Princeton Plasma Physics Lab

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Upcoming Events Events Calendar Colloquia Archive Science On Saturday Archive Research Education Organization Contact Us Upcoming Events Events Calendar Colloquia Archive Science On Saturday Archive Science On Saturday Archive EXTENDED! Science on Saturday: Using Physics and Chemistry to Understand the Genome March 19, 2016 Professor Mary Jo Ondrechen Northeastern University Science on Saturday: Taking the Universe's Baby Picture March 12, 2016 Professor David Spergel Princeton University

  15. Briefing: DOE and the Life and Medical Sciences

    Broader source: Energy.gov [DOE]

    Aristides Patrinos, Deputy Director for Research, NYU Center for Urban Science and Progress, discussed DOE and the Life and Medical Sciences in his presentation entitled, The Promise and Challenges of the Human Genome Program. Sharlene Weatherwax, Associate Director, Biological and Environmental Research, Office of Science, DOE, discussed DOE and the Life and Medical Sciences in her presentation entitled, The Department of Energy's Activities Supporting the Life and Medical Sciences.

  16. Human Genome: DOE Origins

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Human Genome Research: DOE Origins Resources with Additional Information Charles DeLisi Charles DeLisi The genesis of the Department of Energy (DOE) human genome project took place ...

  17. Explosives Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Explosives Science Explosives Science Current efforts in explosives science cover many areas critical to national security. One particular area is the need for countermeasures against explosive threats. v Comprehensive explosives process Los Alamos National Laboratory offers a comprehensive explosives process. This process leverages entire technical divisions dedicated to explosives science. Los Alamos scientists combine advanced expertise and capabilities with modern facilities. These assets

  18. Statistical Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    6 Statistical Sciences Applying statistical reasoning and rigor to multidisciplinary scientific investigations Contact Us Group Leader James Gattiker (Acting) Email Deputy Group Leader Geralyn Hemphill (Acting) Email Group Administrator LeeAnn Martinez (505) 667-3308 Email Statistical Sciences Statistical Sciences provides statistical reasoning and rigor to multidisciplinary scientific investigations and development, application, and communication of cutting-edge statistical sciences research.

  19. Exploiting the genome

    SciTech Connect (OSTI)

    Block, S.; Cornwall, J.; Dyson, F.; Koonin, S.; Lewis, N.; Schwitters, R.

    1998-09-11

    In 1997, JASON conducted a DOE-sponsored study of the human genome project with special emphasis on the areas of technology, quality assurance and quality control, and informatics. The present study has two aims: first, to update the 1997 Report in light of recent developments in genome sequencing technology, and second, to consider possible roles for the DOE in the ''post-genomic" era, following acquisition of the complete human genome sequence.

  20. The human genome project

    SciTech Connect (OSTI)

    Yager, T.D.; Zewert, T.E.; Hood, L.E. )

    1994-04-01

    The Human Genome Project (HGP) is a coordinated worldwide effort to precisely map the human genome and the genomes of selected model organisms. The first explicit proposal for this project dates from 1985 although its foundations (both conceptual and technological) can be traced back many years in genetics, molecular biology, and biotechnology. The HGP has matured rapidly and is producing results of great significance.

  1. Science Highlights

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Highlights Print Science Highlights Featured scientific research based on publications resulting from work done at the ALS. Highlights are nominated by management and beamline scientists for their scientific significance. Current highlights (2004-present), highlight archives (1995-2004), and Summary Slides of ALS Science Highlights are also available. Science Briefs Short reports on recent research submitted by ALS beamline scientists and users. Science Caf├ęs Informal lecture series

  2. Science Highlights

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Highlights Print Science Highlights Featured scientific research based on publications resulting from work done at the ALS. Highlights are nominated by management and beamline scientists for their scientific significance. Current highlights (2004-present), highlight archives (1995-2004), and Summary Slides of ALS Science Highlights are also available. Science Briefs Short reports on recent research submitted by ALS beamline scientists and users. Science Caf├ęs Informal lecture series

  3. Explore Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Explore Explore Science Create your own science adventure by exploring our varied exhibits, and learn what inspired our scientists, engineers and technicians to discover new things. August 18, 2014 boys conducting experiment [Science is] a great game. It is inspiring and refreshing. The playing field is the universe itself. -I.I. Rabi Science is thinking in an organized way about things. You don't need a license or permission to practice science. Scientists are interested in just about anything

  4. Chemical Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Chemical Science Chemical Science National security depends on science and technology. The United States relies on Los Alamos National Laboratory for the best of both. No place on Earth pursues a broader array of world-class scientific endeavors. Actinide Chemistry┬╗ Modeling and Simulation in the Chemical Sciences┬╗ Synthetic and Mechanistic Chemistry┬╗ Chemistry for Measurement and Detection Science┬╗ Chemical Researcher Jeff Pietryga shows two vials of different-size nanocrystals, each

  5. Science Events

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Science Events Learn about our science by coming to Frontiers in Science lectures, catch Cafe Scientific events in your community, or come to sicence events at the Bradbury Science Museum. Sep 27 Tue 7:00 AM Systems Approaches in Immunology Inn and Spa at Loretto - Santa Fe, NM Advancements in immunology can be made through the development of theoretical and experimental techniques supplying models that bring together phenomena at different levels of complexity to study mechanisms that

  6. Science Highlights

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Highlights Print Science Highlights Featured scientific research based on publications resulting from work done at the ALS. Highlights are nominated by management and beamline scientists for their scientific significance. Current highlights (2004-present), highlight archives (1995-2004), and Summary Slides of ALS Science Highlights are also available. Science Briefs Short reports on recent research submitted by ALS beamline scientists and users. Science Caf├ęs Informal lecture series

  7. Science Highlights

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Highlights Print Science Highlights Featured scientific research based on publications resulting from work done at the ALS. Highlights are nominated by management and beamline scientists for their scientific significance. Current highlights (2004-present), highlight archives (1995-2004), and Summary Slides of ALS Science Highlights are also available. Science Briefs Short reports on recent research submitted by ALS beamline scientists and users. Science Caf├ęs Informal lecture series

  8. Science Engagement

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Engagement Science Engagement Move your data Programs & Workshops Science Requirements Reviews Case Studies Contact Us Technical Assistance: 1 800-33-ESnet (Inside US) 1 800-333-7638 (Inside US) 1 510-486-7600 (Globally) 1 510-486-7607 (Globally) Report Network Problems: trouble@es.net Provide Web Site Feedback: info@es.net Science Engagement The ESnet Science Engagement team's mission is to ensure that science collaborations at every scale, in every domain, have the information and

  9. Photon Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Photo Gallery The latest photos from NNSA headquarters and across the nuclear security enterprise. The latest photos from NNSA headquarters and across the nuclear security enterprise. Visit us on Flickr

    science Photon Science Along with its primary missions-global security, energy security, basic science, and national competitiveness-the NIF & Photon Science Directorate also pursues research and development projects to innovate and develop cutting-edge technologies in support of those

  10. Science Briefs

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    feed-image Digg: ALSBerkeleyLab Facebook Page: 208064938929 Flickr: advancedlightsource/albums Twitter: AdvLightSource YouTube: AdvancedLightSource Home Science Highlights Science Briefs Science Briefs ALS Science Briefs are short (250 words maximum) descriptions of recently published ALS-related work. These "brief" highlights also include one image, a caption (50 words), and the publication citation. All ALS users and beamline scientists are invited to fill out the short submission

  11. Science Digests

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Digests Science Digests Our Science Digests embrace complex issues around our science, technologies, and mission in a series of mini-articles that provide a context for our historical approach, current problem solving and our vision for the future. Spatial partitioning for the ocean simulation data set. Data triage enables extreme-scale computing Data selection and triage are important techniques for large-scale data, which can drastically reduce the amount of data written to disk or

  12. Big Science

    ScienceCinema (OSTI)

    Dr. Thomas Zacharia

    2010-01-08

    Big science seeks big solutions for the most urgent problems of our times. Video courtesy Cray, Inc.

  13. Huazhong Science Technology University Yongtai Science Technology...

    Open Energy Info (EERE)

    Huazhong Science Technology University Yongtai Science Technology Co Ltd Jump to: navigation, search Name: Huazhong Science & Technology University Yongtai Science & Technology Co...

  14. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology LANL leads the world in computational finishing of microbial genomes Read caption + In 2013, Los Alamos scientist Richard Sayre and his team genetically modified the organisms to harvest light more efficiently for maximum production. Overview of Research and Highlights Researchers at Los Alamos National Laboratory are using their renowned expertise in genomics, computation, and experimental biology as the foundation of a dynamic systems biology capability. Systems

  15. Climate & Earth Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Human-Induced Climate Change Reduces Chance of Flooding in Okavango Delta Energy Science Engineering Science Environmental Science Fusion Science Math & Computer Science Nuclear...

  16. Insights from twenty years of bacterial genome sequencing

    SciTech Connect (OSTI)

    Land, Miriam L; Hauser, Loren John; Jun, Se Ran; Nookaew, Intawat; Leuze, Michael Rex; Ahn, Tae-Hyuk; Karpinets, Tatiana V; Lund, Ole; Kora, Guruprasad H; Wassenaar, Trudy; Poudel, Suresh; Ussery, David W

    2015-01-01

    Since the first two complete bacterial genome sequences were published in 1995, the science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is possible to completely sequence a bacterial genome in a few hours and identify some types of methylation sites along the genome as well. Sequencing of bacterial genome sequences is now a standard procedure, and the information from tens of thousands of bacterial genomes has had a major impact on our views of the bacterial world. In this review, we explore a series of questions to highlight some insights that comparative genomics has produced. To date, there are genome sequences available from 50 different bacterial phyla and 11 different archaeal phyla. However, the distribution is quite skewed towards a few phyla that contain model organisms. But the breadth is continuing to improve, with projects dedicated to filling in less characterized taxonomic groups. The clustered regularly interspaced short palindromic repeats (CRISPR)-Cas system provides bacteria with immunity against viruses, which outnumber bacteria by tenfold. How fast can we go? Second-generation sequencing has produced a large number of draft genomes (close to 90 % of bacterial genomes in GenBank are currently not complete); third-generation sequencing can potentially produce a finished genome in a few hours, and at the same time provide methlylation sites along the entire chromosome. The diversity of bacterial communities is extensive as is evident from the genome sequences available from 50 different bacterial phyla and 11 different archaeal phyla. Genome sequencing can help in classifying an organism, and in the case where multiple genomes of the same species are available, it is possible to calculate the pan- and core genomes; comparison of more than 2000 Escherichia coli genomes finds an E. coli core genome of about 3100 gene families and a total of about 89,000 different gene families. Why do we care about bacterial genome

  17. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology LANL leads the world in computational finishing of microbial ... and experimental biology as the foundation of a dynamic systems biology capability. ...

  18. Fungal Genomics Program

    SciTech Connect (OSTI)

    Grigoriev, Igor

    2012-03-12

    The JGI Fungal Genomics Program aims to scale up sequencing and analysis of fungal genomes to explore the diversity of fungi important for energy and the environment, and to promote functional studies on a system level. Combining new sequencing technologies and comparative genomics tools, JGI is now leading the world in fungal genome sequencing and analysis. Over 120 sequenced fungal genomes with analytical tools are available via MycoCosm (www.jgi.doe.gov/fungi), a web-portal for fungal biologists. Our model of interacting with user communities, unique among other sequencing centers, helps organize these communities, improves genome annotation and analysis work, and facilitates new larger-scale genomic projects. This resulted in 20 high-profile papers published in 2011 alone and contributing to the Genomics Encyclopedia of Fungi, which targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts). Our next grand challenges include larger scale exploration of fungal diversity (1000 fungal genomes), developing molecular tools for DOE-relevant model organisms, and analysis of complex systems and metagenomes.

  19. Genomics Division Home

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    to the most primitive soil microbe represent a watershed opportunity for biology. The Genomics Division is taking advantage of this wealth of new information. While it is well...

  20. Human Genome: DOE Origins

    Office of Scientific and Technical Information (OSTI)

    of the Department of Energy; DOE Technical Report; 1988 Mapping and Sequencing the Human Genome; DOE Technical Report; 1988 Understanding our Genetic Inheritance: The U.S....

  1. Environmental Molecular Sciences Laboratory (EMSL) | U.S. DOE Office of

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science (SC) Environmental Molecular Sciences Laboratory (EMSL) Biological and Environmental Research (BER) BER Home About Research Facilities User Facilities Atmospheric Radiation Measurement Climate Research Facility (ARM) Environmental Molecular Sciences Laboratory (EMSL) Joint Genome Institute (JGI) Science Highlights Benefits of BER Funding Opportunities Biological & Environmental Research Advisory Committee (BERAC) Community Resources Contact Information Biological and

  2. NREL Support for a Functional Genomics Approach to Investigate Regulation of Phenolic Glycoside: Cooperative Research and Development Final Report, CRADA number CRD-07-00218

    SciTech Connect (OSTI)

    Davis, M.

    2010-07-01

    NREL and MTU collaborated on a proposal 'A Functional Genomics Approach to Investigate Regulation of Phenolic Glycoside Metabolism in Populus' funded by the National Science Foundation.

  3. The Future of Microbial Genomics

    SciTech Connect (OSTI)

    Kyrpides, Nikos [Genome Biology group at the DOE Joint Genome Institute

    2010-06-02

    Nikos Kyrpides, head of the Genome Biology group at the DOE Joint Genome Institute discusses current challenges in the field of microbial genomics on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM

  4. Science Briefs

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Briefs Science Briefs Read in detail about specific Los Alamos science achievements, and the honors our scientists are accruing. News Releases Science Briefs Photos Picture of the Week Publications Social Media Videos Fact Sheets Elizabeth Kelly Kelly named Fellow of the American Statistical Association The American Statistical Association (ASA) has honored Elizabeth Kelly with the title of Fellow. - 8/2/16 Beverly Aikin, left, and Ellen Cerreta Aikin and Cerreta named as ASM Fellows ASM

  5. Energy Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Materials Scientists are advancing the fundamental science of materials within the context of global energy-related challenges. They are developing experimental and theoretical...

  6. Information Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Information Science and Technology (ASIS&T) American Society for Indexing (ASI) Digital Library Federation (DLF) National Archives and Records Administration (NARA) Special...

  7. Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nanotechnology and algae biofuels exhibits open July 26 at the Bradbury Science Museum ... how nanoparticles work, while "Algae to Biofuels: Squeezing Power from Pond Scum," gives ...

  8. Computational Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ... Advanced Materials Laboratory Center for Integrated Nanotechnologies Combustion Research Facility Computational Science Research Institute Joint BioEnergy Institute About EC News ...

  9. SciTech Connect: genomics

    Office of Scientific and Technical Information (OSTI)

    genomics Find + Advanced Search Term Search Semantic Search Advanced Search All Fields: genomics Semantic Semantic Term Title: Full Text: Bibliographic Data: Creator Author:...

  10. Human Genome Research: Decoding DNA

    Office of Scientific and Technical Information (OSTI)

    ... Speeding Up the Process of Gene Discovery Engineered Enzyme Accelerates DNA Sequencing Putting a Virus to Practical Use DOE Joint Genome Institute The Human Genome Project: ...

  11. Human Genome Research: Decoding DNA

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Human Genome Research: Decoding DNA Resources with Additional Information Charles DeLisi ... role in proposing and initiating the Human Genome Program in 1986. The U.S. ...

  12. Thermal Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Thermal Sciences NETL's Thermal Sciences competency provides the scientific, engineering, and technology development community with innovative and efficient approaches to measure, harness, and convert thermal energy. Research includes sensors, advanced energy concepts, and thermodynamic optimization, specifically: Sensors and Diagnostics Advanced sensor and diagnostic technology to develop and evaluate advanced methods for non-intrusive measurement and measurement in extreme environments.

  13. Eukaryotic Genomics Data from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    From the JGI webportal users can choose Eukaryotic genomes from a photo list, access the JGI FTP directories to download data files, use the Tree of Life navigation tool, or choose a genome and go directly to a website specific to that one genome. The individual sites include direct access to download sequence files, BLAST, search, view and navigate the genomic annotations.

  14. Human Genome Education Program

    SciTech Connect (OSTI)

    Richard Myers; Lane Conn

    2000-05-01

    The funds from the DOE Human Genome Program, for the project period 2/1/96 through 1/31/98, have provided major support for the curriculum development and field testing efforts for two high school level instructional units: Unit 1, ''Exploring Genetic Conditions: Genes, Culture and Choices''; and Unit 2, ''DNA Snapshots: Peaking at Your DNA''. In the original proposal, they requested DOE support for the partial salary and benefits of a Field Test Coordinator position to: (1) complete the field testing and revision of two high school curriculum units, and (2) initiate the education of teachers using these units. During the project period of this two-year DOE grant, a part-time Field-Test Coordinator was hired (Ms. Geraldine Horsma) and significant progress has been made in both of the original proposal objectives. Field testing for Unit 1 has occurred in over 12 schools (local and non-local sites with diverse student populations). Field testing for Unit 2 has occurred in over 15 schools (local and non-local sites) and will continue in 12-15 schools during the 96-97 school year. For both curricula, field-test sites and site teachers were selected for their interest in genetics education and in hands-on science education. Many of the site teachers had no previous experience with HGEP or the unit under development. Both of these first-year biology curriculum units, which contain genetics, biotechnology, societal, ethical and cultural issues related to HGP, are being implemented in many local and non-local schools (SF Bay Area, Southern California, Nebraska, Hawaii, and Texas) and in programs for teachers. These units will reach over 10,000 students in the SF Bay Area and continues to receive support from local corporate and private philanthropic organizations. Although HGEP unit development is nearing completion for both units, data is still being gathered and analyzed on unit effectiveness and student learning. The final field testing result from this analysis will

  15. Human Genome Project

    SciTech Connect (OSTI)

    Block, S.; Cornwall, J.; Dally, W.; Dyson, F.; Fortson, N.; Joyce, G.; Kimble, H. J.; Lewis, N.; Max, C.; Prince, T.; Schwitters, R.; Weinberger, P.; Woodin, W. H.

    1998-01-04

    The study reviews Department of Energy supported aspects of the United States Human Genome Project, the joint National Institutes of Health/Department of Energy program to characterize all human genetic material, to discover the set of human genes, and to render them accessible for further biological study. The study concentrates on issues of technology, quality assurance/control, and informatics relevant to current effort on the genome project and needs beyond it. Recommendations are presented on areas of the genome program that are of particular interest to and supported by the Department of Energy.

  16. Human Genome Program

    SciTech Connect (OSTI)

    Not Available

    1993-01-01

    The DOE Human Genome program has grown tremendously, as shown by the marked increase in the number of genome-funded projects since the last workshop held in 1991. The abstracts in this book describe the genome research of DOE-funded grantees and contractors and invited guests, and all projects are represented at the workshop by posters. The 3-day meeting includes plenary sessions on ethical, legal, and social issues pertaining to the availability of genetic data; sequencing techniques, informatics support; and chromosome and cDNA mapping and sequencing.

  17. Science DMZ Case Studies

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science DMZ Case Studies Science DMZ @ UF Science DMZ @ CU Science DMZ @ Penn & VTTI Science DMZ @ NOAA Science DMZ @ NERSC Science DMZ @ ALS Multi-facility Workflow Case Study News & Publications ESnet News Publications and Presentations Galleries ESnet Awards and Honors Blog ESnet Live Home ┬╗ Science Engagement ┬╗ Case Studies ┬╗ Science DMZ Case Studies Science Engagement Move your data Programs & Workshops Science Requirements Reviews Case Studies OSCARS Case Studies Science

  18. NREL: Energy Sciences - Chemical and Materials Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    in the U.S. Department of Energy (DOE) National Photovoltaic Program and DOE Basic Energy Sciences Program. Materials Science. The Materials Science Group's research...

  19. National Security Science Archive

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science NSS Archive National Security Science Latest Issue:July 2015 past issues All Issues submit National Security Science Archive National Security Science magazine...

  20. Basic Energy Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Basic Energy Sciences Basic Energy Sciences Supporing research to understand, predict and ... The DOE Office of Science's Basic Energy Sciences program equips scientists with a ...

  1. Genomic library construction

    DOE Patents [OSTI]

    Church, George M.; Zhang, Kun

    2011-07-26

    Compositions and methods for amplifying nucleic acid sequences from a single cell are provided. Compositions and methods for constructing a genomic library from a single cell are also provided.

  2. Integrative Genomics Building

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Integrative Genomics Building Community Environmental Documents Tours Community Programs Friends of Berkeley Lab Ôçĺ Navigate Section Community Environmental Documents Tours Community Programs Friends of Berkeley Lab Project Description The Integrative Genomics Building (IGB) is proposed to be an approximately 77,000 gsf, four-story research and office building constructed in the former Bevatron area - a fully developed site in the geographic interior of the Berkeley Lab. The IGB is intended to

  3. Ebolavirus comparative genomics

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Jun, Se-Ran; Leuze, Michael R.; Nookaew, Intawat; Uberbacher, Edward C.; Land, Miriam; Zhang, Qian; Wanchai, Visanu; Chai, Juanjuan; Nielsen, Morten; Trolle, Thomas; et al

    2015-07-14

    The 2014 Ebola outbreak in West Africa is the largest documented for this virus. We examine the dynamics of this genome, comparing more than one hundred currently available ebolavirus genomes to each other and to other viral genomes. Based on oligomer frequency analysis, the family Filoviridae forms a distinct group from all other sequenced viral genomes. All filovirus genomes sequenced to date encode proteins with similar functions and gene order, although there is considerable divergence in sequences between the three genera Ebolavirus, Cuevavirus, and Marburgvirus within the family Filoviridae. Whereas all ebolavirus genomes are quite similar (multiple sequences of themore┬á┬╗ same strain are often identical), variation is most common in the intergenic regions and within specific areas of the genes encoding the glycoprotein (GP), nucleoprotein (NP), and polymerase (L). We predict regions that could contain epitope-binding sites, which might be good vaccine targets. In conclusion, this information, combined with glycosylation sites and experimentally determined epitopes, can identify the most promising regions for the development of therapeutic strategies.┬ź┬áless

  4. Science Magazine

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    & ANALYSIS www.sciencemag.org SCIENCE VOL 339 8 FEBRUARY 2013 635 Steven Chu, the fi rst Nobel-winning scien- tist to lead the sprawling U.S. Department of Energy (DOE), has rarely...

  5. EXTENDED! Science on Saturday: Using Physics and Chemistry to Understand

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    the Genome | Princeton Plasma Physics Lab March 19, 2016, 9:30am Science On Saturday PPPL, MBG Auditorium EXTENDED! Science on Saturday: Using Physics and Chemistry to Understand the Genome Professor Mary Jo Ondrechen Northeastern University Abstract: PDF icon 03 Ondrechen-1.pdf ***ATTENTION*** Join us as Dr. Ondrechen gives her talk at our final lecture of the series on March 19, 2016- same time, same place! Science_on_Saturday19Mar2016_MJOndrechen Contact Information Coordinator(s): Ms.

  6. Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nanotechnology and algae biofuels exhibits open July 26 at the Bradbury Science Museum July 22, 2013 LOS ALAMOS, N.M., July 22, 2013-Los Alamos National Laboratory's Bradbury Science Museum is opening two new exhibits July 26 as part of the Laboratory's 70th Anniversary celebration. One is a nanotechnology exhibit featuring the Laboratory's Center for Integrated Nanotechnologies (CINT) and the other is an algae biofuel exhibit from the Laboratory and the New Mexico Consortium. An opening

  7. Science Facilities

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Facilities Science Facilities The focal point for basic and applied R&D programs with a primary focus on energy but also encompassing medical, biotechnology, high-energy physics, and advanced scientific computing programs. Center for Integrated Nanotechnologies┬╗ Dual Axis Radiographic Hydrodynamic Test Facility (DARHT)┬╗ Electron Microscopy Lab┬╗ Ion Beam Materials Lab┬╗ Isotope Production Facility┬╗ Los Alamos Neutron Science Center┬╗ Lujan Center┬╗ Matter-Radiation Interactions in

  8. Measurement Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    wins 2016 Joseph F. Keithley Award for Advances in Measurement Science October 15, 2015 Honors to Albert Migliori, developer of resonant ultrasound spectroscopy LOS ALAMOS, N.M., Oct. 15, 2015-Los Alamos National Laboratory physicist Albert Migliori, having led the development of a powerful tool for important measurements in condensed matter physics including superconductivity, is being given the Joseph F. Keithley Award For Advances in Measurement Science, the top instrumentation prize of the

  9. Molecular Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Molecular Science NETL's Molecular Science competency provides technology-enabling computational and experimental insight into the atomic-level processes occurring in condensed matter and gas phase systems or at the heterogeneous surface-gas interfaces used for energy applications. Research includes molecular optimization as well as both classical and high-throughput material design, specifically: Molecular Optimization Development and application of new computational approaches in the general

  10. Nuclear Science

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    and Engineering Education Sourcebook 2013 American Nuclear Society US Department of Energy Nuclear Science & Engineering Education Sourcebook 2013 North American Edition American Nuclear Society Education, Training, and Workforce Division US Department of Energy Office of Nuclear Energy Editor and Founder John Gilligan Professor of Nuclear Engineering North Carolina State University Version 5.13 Welcome to the 2013 Edition of the Nuclear Science and Engineering Education (NS&EE)

  11. Isotope Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science and Production 35 years of experience in isotope production, processing, and applications. Llllll Committed to the safe and reliable production of radioisotopes, products, and services. Contact: Kevin John LANL Isotope Program Manager kjohn@lanl.gov 505-667-3602 Sponsored by the Department of Energy National Isotope Program http://www.nuclear.energy.gov/isotopes/nelsotopes2a.html Isotopes for Environmental Science Isotopes produced at Los Alamos National Laboratory are used as

  12. Chemical Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Chemical Science Chemical Science Plant fatty acids are used in a vast range of products, from polymers to plastics and soaps to industrial feed stocks -- making up an estimated $150 billion market annually. A new discovery of inserting double bonds in the fatty acids could show the way to the designer production of plant fatty acids, and, in turn, to new industrial applications and new products. <a href

  13. Energy Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Energy Science Energy Science Print Our current fossil-fuel-based system is causing potentially catastrophic changes to our planet. The quest for renewable, nonpolluting sources of energy requires us to understand, predict, and ultimately control matter and energy at the electronic, atomic, and molecular levels. Light-source facilities-the synchrotrons of today and the next-generation light sources of tomorrow-are the scientific tools of choice for exploring the electronic and atomic structure

  14. Fermilab | Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    feature photo feature photo feature photo feature photo feature photo Science Navbar Toggle About Quick Info Science History Leadership and Organization Leadership Organizational chart Committees and Councils Photo and Video Gallery Diversity Education Safety Sustainability and Environment Contact Related Links DOE FRA UChicago URA Newsroom Spotlight Press releases Fact sheets and brochures symmetry Interactions.org Photo and video archive Resources for ... Employees Researchers, postdocs and

  15. What Makes Science, Science? Research, Shared Effort ... & A...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Makes Science, Science? Research, Shared Effort ... & A New Office of Science Website What Makes Science, Science? Research, Shared Effort ... & A New Office of Science Website ...

  16. Neal Lane: Confessions of a President's Science Advisor

    ScienceCinema (OSTI)

    Neal Lane

    2010-09-01

    Former science advisor to president Bill Clinton Neal Lane briefly reviews the history of the job of Science Advisor to the President and give some examples of issues he had to deal with when he was in that position, including climate change, stem cell research, the human genome, nanotechnology and research funding. He will also give his opinions about the present and future state of science in the U.S.

  17. GenomeVista

    Energy Science and Technology Software Center (OSTI)

    2002-11-04

    Aligning large vertebrate genomes that are structurally complex poses a variety of problems not encountered on smaller scales. Such genomes are rich in repetitive elements and contain multiple segmental duplications, which increases the difficulty of identifying true orthologous SNA segments in alignments. The sizes of the sequences make many alignment algorithms designed for comparing single proteins extremely inefficient when processing large genomic intervals. We integrated both local and global alignment tools and developed a suitemore┬á┬╗ of programs for automatically aligning large vertebrate genomes and identifying conserved non-coding regions in the alignments. Our method uses the BLAT local alignment program to find anchors on the base genome to identify regions of possible homology for a query sequence. These regions are postprocessed to find the best candidates which are then globally aligned using the AVID global alignment program. In the last step conserved non-coding segments are identified using VISTA. Our methods are fast and the resulting alignments exhibit a high degree of sensitivity, covering more than 90% of known coding exons in the human genome. The GenomeVISTA software is a suite of Perl programs that is built on a MySQL database platform. The scheduler gets control data from the database, builds a queve of jobs, and dispatches them to a PC cluster for execution. The main program, running on each node of the cluster, processes individual sequences. A Perl library acts as an interface between the database and the above programs. The use of a separate library allows the programs to function independently of the database schema. The library also improves on the standard Perl MySQL database interfere package by providing auto-reconnect functionality and improved error handling.┬ź┬áless

  18. Genomes to Proteomes

    SciTech Connect (OSTI)

    Panisko, Ellen A.; Grigoriev, Igor; Daly, Don S.; Webb-Robertson, Bobbie-Jo; Baker, Scott E.

    2009-03-01

    Biologists are awash with genomic sequence data. In large part, this is due to the rapid acceleration in the generation of DNA sequence that occurred as public and private research institutes raced to sequence the human genome. In parallel with the large human genome effort, mostly smaller genomes of other important model organisms were sequenced. Projects following on these initial efforts have made use of technological advances and the DNA sequencing infrastructure that was built for the human and other organism genome projects. As a result, the genome sequences of many organisms are available in high quality draft form. While in many ways this is good news, there are limitations to the biological insights that can be gleaned from DNA sequences alone; genome sequences offer only a bird's eye view of the biological processes endemic to an organism or community. Fortunately, the genome sequences now being produced at such a high rate can serve as the foundation for other global experimental platforms such as proteomics. Proteomic methods offer a snapshot of the proteins present at a point in time for a given biological sample. Current global proteomics methods combine enzymatic digestion, separations, mass spectrometry and database searching for peptide identification. One key aspect of proteomics is the prediction of peptide sequences from mass spectrometry data. Global proteomic analysis uses computational matching of experimental mass spectra with predicted spectra based on databases of gene models that are often generated computationally. Thus, the quality of gene models predicted from a genome sequence is crucial in the generation of high quality peptide identifications. Once peptides are identified they can be assigned to their parent protein. Proteins identified as expressed in a given experiment are most useful when compared to other expressed proteins in a larger biological context or biochemical pathway. In this chapter we will discuss the automatic

  19. 2013 Progress Report -- DOE Joint Genome Institute

    SciTech Connect (OSTI)

    2013-11-01

    In October 2012, we introduced a 10-Year Strategic Vision [http://bit.ly/JGI-Vision] for the Institute. A central focus of this Strategic Vision is to bridge the gap between sequenced genomes and an understanding of biological functions at the organism and ecosystem level. This involves the continued massive-scale generation of sequence data, complemented by orthogonal new capabilities to functionally annotate these large sequence data sets. Our Strategic Vision lays out a path to guide our decisions and ensure that the evolving set of experimental and computational capabilities available to DOE JGI users will continue to enable groundbreaking science.

  20. Berkeley Quantitative Genome Browser

    Energy Science and Technology Software Center (OSTI)

    2008-02-29

    The Berkeley Quantitative Genome Browser provides graphical browsing functionality for genomic data organized, at a minimum, by sequence and position. While supporting the annotation browsing features typical of many other genomic browsers, additional emphasis is placed on viewing and utilizing quantitative data. Data may be read from GFF, SGR, FASTA or any column delimited format. Once the data has been read into the browser's buffer, it may be searched. filtered or subjected to mathematical transformation.more┬á┬╗ The browser also supplies some graphical design manipulation functionality geared towards preparing figures for presentations or publication. A plug-in mechanism enables development outside the core functionality that adds more advanced or esoteric analysis capabilities. BBrowse's development and distribution is open-source and has been built to run on Linux, OSX and MS Windows operating systems.┬ź┬áless

  1. Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    stockpile stewardship focus of 70th anniversary lecture December 12, 2013 Last in year-long series of public talks at Bradbury Science Museum LOS ALAMOS, N.M., Dec. 12, 2013-The role Los Alamos National Laboratory plays in stockpile stewardship is the focus of the final 70th Anniversary Lecture Dec. 18 at the Bradbury Science Museum. Jon Ventura, Los Alamos's executive staff advisor to the Principal Associate Director for Weapons Programs, will give the talk beginning at 5:30 p.m. "For 70

  2. Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Early social history of Los Alamos focus of 70th anniversary lecture at Bradbury Science Museum May 2, 2013 NMSU history professor Jon Hunner speaks May 8 LOS ALAMOS, N.M., May 2, 2013-The early social history of Los Alamos during Los Alamos National Laboratory's Manhattan Project beginnings will be discussed at a talk by Jon Hunner at 5:30 p.m., May 8 at the Laboratory's Bradbury Science Museum. The talk is part of the Laboratory's 70th anniversary lecture series. Hunner heads the Department of

  3. Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Maintaining nuclear stability in times of transition focus of talk at Bradbury Science Museum January 9, 2014 First in series of evening lectures open to public LOS ALAMOS, N.M., Jan. 9, 2014-Los Alamos National Laboratory Senior Fellow Houston "Terry" Hawkins talks about the role that the nation's nuclear weapons stockpile plays in maintaining the nation's defense - and that of our allies - in a talk at 5:30 p.m., Jan. 15 at the Bradbury Science Museum. The talk is the first in a

  4. Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Emerging threats to global security focus of March 12 talk at Bradbury Science Museum March 6, 2014 Terry Wallace to address Lab's role in helping the government meet national security challenges LOS ALAMOS, N.M., March 6, 2014-Terry Wallace, principal associate director for Global Security at Los Alamos National Laboratory, will talk about potential emerging threats in a lecture at 5:30 p.m., March 12 at the Bradbury Science Museum. The talk is the third in a series of evening lectures planned

  5. Science Highlights

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Highlights Science Highlights Science highlights feature research conducted by staff and users at the ALS. If a Power Point summary slide or a PDF handout of the highlight is available, you will find it linked beneath the highlight listing and on the highlight's page. You may also print a version of a highlight by clicking the print icon associated with each highlight. New Catalyst Boosts Selective Formation of Olefins from Syngas Print Wednesday, 10 August 2016 00:00 Experiments at the ALS have

  6. Microbial Genomics Data from the DOE Joint Genome Institute (JGI)

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    As of March 2008, The Joint Genome Institute has released 296 Prokaryotic microbial sites, with 216 in finished status.

  7. Report on the Human Genome Initiative

    SciTech Connect (OSTI)

    Tinoco, I.; Cahill, G.; Cantor, C.; Caskey, T.; Dulbecco, R.; Engelhardt, D. L.; Hood, L.; Lerman, L. S.; Mendelsohn, M. L.; Sinsheimer, R. L.; Smith, T.; Soll, D.; Stormo, G.; White, R. L.

    1987-04-01

    The report urges DOE and the Nation to commit to a large. multi-year. multidisciplinary. technological undertaking to order and sequence the human genome. This effort will first require significant innovation in general capability to manipulate DNA. major new analytical methods for ordering and sequencing. theoretical developments in computer science and mathematical biology, and great expansions in our ability to store and manipulate the information and to interface it with other large and diverse genetic databases. The actual ordering and sequencing involves the coordinated processing of some 3 billion bases from a reference human genome. Science is poised on the rudimentary edge of being able to read and understand human genes. A concerted. broadly based. scientific effort to provide new methods of sufficient power and scale should transform this activity from an inefficient one-gene-at-a-time. single laboratory effort into a coordinated. worldwide. comprehensive reading of "the book of man". The effort will be extraordinary in scope and magnitude. but so will be the benefit to biological understanding. new technology and the diagnosis and treatment of human disease.

  8. Genomes to Life Diversity Initiative

    SciTech Connect (OSTI)

    McClure, Thomas

    2010-03-15

    This was a collaborative initiative between Western Carolina University, Furman University and the University of North Carolina-Asheville. At each of the institutions, funds from the grant award were used for the acquisition of mostly microscopy laboratory equipment, supporting supplies and necessary training as appropriate. The distribution of funds was: $495,000 Western Carolina University; $130,000 Furman University; $100,000 University of North Carolina-Asheville for a total of $725,000 total award from DOE. Western Carolina University purchased significant instrumentation with funds from this award that included among others, fermenters, a Confocal microscope, and an automated sequencer. The fermenters have been used in research and courses and to prepare biochemical materials for research and courses. The Confocal microscope has provided Western students and faculty with unique imaging opportunities not generally available except in medical schools. Unlike regular optical microscopy, confocal microscopy offers a three-dimensional image that can be viewed from different angles. In addition, the device has been set up to be controlled from remote locations, providing high school and institutions of higher education students across Western North Carolina with the opportunity to use state-of-the-art instrumentation from their location. One of the goals of this collaboration was to get more high school students interested in science. The automated sequencer has become a very significant instructional and research tool. It has been widely used for characterizing the oak genome, which has very significant implications for Western North Carolina. More recently, it has been used for groundbreaking forensic science research. This device has been used to create a database to identify unidentified persons. The instrument has also been used in several undergraduate and graduate courses, where students learn the principles and operation of this very important instrument

  9. National Security Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science National Security Science Latest Issue:July 2015 past issues All Issues submit National Security Science Showcasing Los Alamos National Laboratory's work on nuclear...

  10. Nuclear Science & Technology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nuclear Science & Technology Nuclear Science & Technology1354608000000Nuclear Science & TechnologySome of these resources are LANL-only and will require Remote Access. No...

  11. Top Science of 2013

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Liquid-scanning technology boosts airport security science-innovationassetsimagesicon-science.jpg Top Science of 2013 Our strong interdisciplinary teaming and unique research...

  12. ORISE: Forensic Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Forensic Science Forensic Science The Oak Ridge Institute for Science and Education (ORISE) provides direct forensic analytical support, consulting and training services to United...

  13. Top Science of 2013

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    RAPTOR telescope witnesses black hole birth science-innovationassetsimagesicon-science.jpg Top Science of 2013 Our strong interdisciplinary teaming and unique research...

  14. Fire Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Energy Defense Waste Management Programs Advanced Nuclear Energy

  15. Discovery Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    universe Discovery Science Since the beginning of civilization, humans have marveled at the night sky and pondered the vast stretches of the universe. The invention of telescopes in the 17th century revealed the first details of the Moon and the planets in our solar system. Four hundred years later, space-based observatories such as NASA's Hubble and Kepler regularly capture amazing vistas of billions of galaxies millions of light years away. Despite these advances, astronomers have only been

  16. Science Pillars

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Pillars Harnessing our scientific capabilities for national security solutions Los Alamos National Laboratory LA-UR-15-27068 Benefits of the Science Pillars The Laboratory's greatest strength is in our multidisciplinary capabilities. The Pillars draw on these capabilities- across traditional organizational and disciplinary boundaries-to help us accomplish our missions. The LDRD Strategic Investment Plan is built around the Pillars. The Laboratory's External Reviews are organized by Pillar.

  17. Information Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    3 Information Sciences Uncovering actionable knowledge and generating insight into exascale datasets from heterogeneous sources in real time Leadership Group Leader Amy Larson (Acting) Email Deputy Group Leader Gowri Srinivasan (Acting) Email Contact Us Administrator Yvonne McKelvey Email Conceptual illustration of futuristic data stream processing. Developing methods and tools for understanding complex interactions and extracting actionable information from massive data streams. Basic and

  18. DOE Joint Genome Institute 2008 Progress Report

    SciTech Connect (OSTI)

    Gilbert, David

    2009-03-12

    While initially a virtual institute, the driving force behind the creation of the DOE Joint Genome Institute in Walnut Creek, California in the Fall of 1999 was the Department of Energy's commitment to sequencing the human genome. With the publication in 2004 of a trio of manuscripts describing the finished 'DOE Human Chromosomes', the Institute successfully completed its human genome mission. In the time between the creation of the Department of Energy Joint Genome Institute (DOE JGI) and completion of the Human Genome Project, sequencing and its role in biology spread to fields extending far beyond what could be imagined when the Human Genome Project first began. Accordingly, the targets of the DOE JGI's sequencing activities changed, moving from a single human genome to the genomes of large numbers of microbes, plants, and other organisms, and the community of users of DOE JGI data similarly expanded and diversified. Transitioning into operating as a user facility, the DOE JGI modeled itself after other DOE user facilities, such as synchrotron light sources and supercomputer facilities, empowering the science of large numbers of investigators working in areas of relevance to energy and the environment. The JGI's approach to being a user facility is based on the concept that by focusing state-of-the-art sequencing and analysis capabilities on the best peer-reviewed ideas drawn from a broad community of scientists, the DOE JGI will effectively encourage creative approaches to DOE mission areas and produce important science. This clearly has occurred, only partially reflected in the fact that the DOE JGI has played a major role in more than 45 papers published in just the past three years alone in Nature and Science. The involvement of a large and engaged community of users working on important problems has helped maximize the impact of JGI science. A seismic technological change is presently underway at the JGI. The Sanger capillary-based sequencing process that

  19. Bradbury Science Museum - Science on Wheels

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    science, technology, engineering and mathematics and promote public understanding and ... science, technology, engineering and mathematics, and the work of Los Alamos National ...

  20. Science DMZ Implemented at NERSC

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NERSC Science Engagement Move your data Programs & Workshops Science Requirements Reviews Case Studies OSCARS Case Studies Science DMZ Case Studies Science DMZ @ UF Science DMZ @ ...

  1. The Los Alamos Science Pillars The Science of Signatures

    SciTech Connect (OSTI)

    Smith, Joshua E.; Peterson, Eugene J.

    2012-09-13

    As a national security science laboratory, Los Alamos is often asked to detect and measure the characteristics of complex systems and to use the resulting information to quantify the system's behavior. The Science of Signatures (SoS) pillar is the broad suite of technical expertise and capability that we use to accomplish this task. With it, we discover new signatures, develop new methods for detecting or measuring signatures, and deploy new detection technologies. The breadth of work at Los Alamos National Laboratory (LANL) in SoS is impressive and spans from the initial understanding of nuclear weapon performance during the Manhattan Project, to unraveling the human genome, to deploying laser spectroscopy instrumentation on Mars. Clearly, SoS is a primary science area for the Laboratory and we foresee that as it matures, new regimes of signatures will be discovered and new ways of extracting information from existing data streams will be developed. These advances will in turn drive the development of sensing instrumentation and sensor deployment. The Science of Signatures is one of three science pillars championed by the Laboratory and vital to supporting our status as a leading national security science laboratory. As with the other two pillars, Materials for the Future and Information Science and Technology for Predictive Science (IS&T), SoS relies on the integration of technical disciplines and the multidisciplinary science and engineering that is our hallmark to tackle the most difficult national security challenges. Over nine months in 2011 and 2012, a team of science leaders from across the Laboratory has worked to develop a SoS strategy that positions us for the future. The crafting of this strategy has been championed by the Chemistry, Life, and Earth Sciences Directorate, but as you will see from this document, SoS is truly an Institution-wide effort and it has engagement from every organization at the Laboratory. This process tapped the insight and

  2. Science and Innovation

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science and Innovation Science and Innovation Our strong interdisciplinary teaming and unique research facilities allow us to develop solutions to complex problems, and to support partners and collaborators, all with the goal of strengthening national security and making a safer world. Science & Engineering Capabilities┬╗ Science Programs┬╗ Science Facilities┬╗ Features┬╗ Science Pillars┬╗ Faces of Science The people behind our science Radical Supercomputing Extreme speeds, big data,

  3. Science Brief Submission Form

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Brief Submission Form Science Brief Submission Form Print Tuesday, 01 May 2007 00:00 Loading... < Prev

  4. Science Magazine

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    MAY 2013 VOL 340 SCIENCE www.sciencemag.org 914 EIGHT NUCLEAR ENGINEERS SIT IN HIGH- backed leather chairs, their laptop comput- ers perched on sleek wood consoles. The lights are so low that the corners of the room fade to black. Up front, a roomwide video screen shows a half-dozen other researchers from locations around the country. A cryptic conversation rattles on: "Rod, we have to be careful. Right now the Cobra to de Novo isn't even using DTK." Welcome to the Consortium for

  5. Science Summary

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    fe-s image ┬╗ Links Scientific Highlight Peters Lab MSU News e! Science News Physorg.com ┬╗ Share this Article Laboratree Ologeez SciLink LabSpaces The Structure of an Algal Hydrogenase Reveals the Assembly and Evolution of Complex Metalloenzymes summary written by Raven Hanna The potential for using biological enzymes to make hydrogen to use as a renewable energy source is a hot topic, but little is known about how these complex enzymes assemble and work. The [FeFe]-hydrogenase enzyme binds

  6. Science Summary

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    H1N1 Flu ┬╗ Links Scientific Highlight Wilson Lab Scripps Press Release Scripps Philanthrophy Science Magazine Vanderbilt Reporter ┬╗ Share this Article Laboratree Ologeez SciLink LabSpaces Structural Basis for Senior Immunity to the Current H1N1 Flu summary written by Raven Hanna An unusual property of the last year's H1N1 "swine flu" virus pandemic is that it disproportionately affected the young. People over the age of around 65 showed much less vulnerability than to more typical

  7. Science Cafe

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Caf├ęs Science Cafe April 27, 2015-Special ALS Colloquium Print Wednesday, 22 April 2015 13:19 Special Event on Monday, April 27 @ 12 noon, USB 15-253 X-Ray Microscopy: The First 120 Years Janos Kirz, ALS Abstract R├Ântgen's great discovery became an instant public sensation. Fascination with the "new kind of rays" that could reveal the structure of opaque objects swept the world in 1896. Fifty years later it was widely recognized that the short wavelength of the radiation should open

  8. The OME Framework for genome-scale systems biology

    SciTech Connect (OSTI)

    Palsson, Bernhard O.; Ebrahim, Ali; Federowicz, Steve

    2014-12-19

    The life sciences are undergoing continuous and accelerating integration with computational and engineering sciences. The biology that many in the field have been trained on may be hardly recognizable in ten to twenty years. One of the major drivers for this transformation is the blistering pace of advancements in DNA sequencing and synthesis. These advances have resulted in unprecedented amounts of new data, information, and knowledge. Many software tools have been developed to deal with aspects of this transformation and each is sorely needed [1-3]. However, few of these tools have been forced to deal with the full complexity of genome-scale models along with high throughput genome- scale data. This particular situation represents a unique challenge, as it is simultaneously necessary to deal with the vast breadth of genome-scale models and the dizzying depth of high-throughput datasets. It has been observed time and again that as the pace of data generation continues to accelerate, the pace of analysis significantly lags behind [4]. It is also evident that, given the plethora of databases and software efforts [5-12], it is still a significant challenge to work with genome-scale metabolic models, let alone next-generation whole cell models [13-15]. We work at the forefront of model creation and systems scale data generation [16-18]. The OME Framework was borne out of a practical need to enable genome-scale modeling and data analysis under a unified framework to drive the next generation of genome-scale biological models. Here we present the OME Framework. It exists as a set of Python classes. However, we want to emphasize the importance of the underlying design as an addition to the discussions on specifications of a digital cell. A great deal of work and valuable progress has been made by a number of communities [13, 19-24] towards interchange formats and implementations designed to achieve similar goals. While many software tools exist for handling genome

  9. Stories of Discovery & Innovation: From Human Genome to Materials...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    From Human Genome to Materials "Genome" Energy Frontier Research Centers (EFRCs) EFRCs ... Stories of Discovery & Innovation: From Human Genome to Materials "Genome" Print Text ...

  10. Fungal Genome Sequencing and Bioenergy

    SciTech Connect (OSTI)

    Schadt, Christopher Warren; Baker, Scott; Thykaer, Jette; Adney, William S; Brettin, Tom; Brockman, Fred; Dhaeseleer, Patrick; Martinez, A diego; Miller, R michael; Rokhsar, Daniel; Torok, Tamas; Tuskan, Gerald A; Bennett, Joan; Berka, Randy; Briggs, Steven; Heitman, Joseph; Rizvi, L; Taylor, John; Turgeon, Gillian; Werner-Washburne, Maggie; Himmel, Michael

    2008-01-01

    To date, the number of ongoing filamentous fungal genome sequencing projects is almost tenfold fewer than those of bacterial and archaeal genome projects. The fungi chosen for sequencing represent narrow kingdom diversity; most are pathogens or models. We advocate an ambitious, forward-looking phylogenetic-based genome sequencing program, designed to capture metabolic diversity within the fungal kingdom, thereby enhancing research into alternative bioenergy sources, bioremediation, and fungal-environment interactions.

  11. Fungal Genome Sequencing and Bioenergy

    SciTech Connect (OSTI)

    Baker, Scott; Thykaer, Jette; Adney, William S; Brettin, Tom; Brockman, Fred; Dhaeseleer, Patrick; Martinez, A diego; Miller, R michael; Rokhsar, Daniel; Schadt, Christopher Warren; Torok, Tamas; Tuskan, Gerald A; Bennett, Joan; Berka, Randy; Briggs, Steven; Heitman, Joseph; Taylor, John; Turgeon, Gillian; Werner-Washburne, Maggie; Himmel, Michael E

    2008-01-01

    To date, the number of ongoing filamentous fungal genome sequencing projects is almost tenfold fewer than those of bacterial and archaeal genome projects. The fungi chosen for sequencing represent narrow kingdom diversity; most are pathogens or models. We advocate an ambitious, forward-looking phylogenetic-based genome sequencing program, designed to capture metabolic diversity within the fungal kingdom, thereby enhancing research into alternative bioenergy sources, bioremediation, and fungal-environment interactions. Published by Elsevier Ltd on behalf of The British Mycological Society.

  12. Structural Genomics: Expectations and Reality

    Office of Scientific and Technical Information (OSTI)

    ... TB Structural Genomics Consortium, http:www.doe-mbi.ucla.eduTB (TB) Structures of M. tuberculosis proteome, with emphasis on functionally important proteins. Non-PSI ...

  13. GPFS for Life Sciences at NERSC-- GPFSug 2015.pptx

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NERSC & JGI collaborative effort! Jason Hick, Rei Lee, Ravi Cheema, and Kjiersten Fagnan! ! GPFS User Group meeting! GPFS for Life Sciences at NERSC --- 1 --- May 2 0, 2 015 Overview of Bioinformatics --- 2 --- A High-level Summary --- 3 --- Bioenergy Carbon C ycling Biogeochemistry Metagenomes Plants Fungi Microbes DNA S ynthesis Science DNA Sequencing Advanced Genomic Technologies ComputaFonal Analysis DNA S ynthesis Metagenome Analysis --- 4 --- Reads (short segments of DNA) generated by

  14. Science DMZ for ALS

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ALS Science Engagement Move your data Programs & Workshops Science Requirements Reviews Case Studies OSCARS Case Studies Science DMZ Case Studies Science DMZ @ UF Science DMZ @ CU Science DMZ @ Penn & VTTI Science DMZ @ NOAA Science DMZ @ NERSC Science DMZ @ ALS Multi-facility Workflow Case Study Contact Us Technical Assistance: 1 800-33-ESnet (Inside US) 1 800-333-7638 (Inside US) 1 510-486-7600 (Globally) 1 510-486-7607 (Globally) Report Network Problems: trouble@es.net Provide Web

  15. Faces of Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Faces of Science Meet the scientists behind the science at Los Alamos. Many of them felt a calling to science at an early age...now they work at a world-class research facility where childhood dreams may become reality. Faces of Science 70 Years of Innovations 50 Years of Space LANL Top Science 2014 Top Ten Innovations of 2013 Energy Sustainability Radical Supercomputing Science Digests FACES OF SCIENCE The people behind our science x x MATHEMATICS Polish scientist Stanislaw Ulam found

  16. Data mining and the human genome

    SciTech Connect (OSTI)

    Abarbanel, Henry; Callan, Curtis; Dally, William; Dyson, Freeman; Hwa, Terence; Koonin, Steven; Levine, Herbert; Rothaus, Oscar; Schwitters, Roy; Stubbs, Christopher; Weinberger, Peter

    2000-01-07

    As genomics research moves from an era of data acquisition to one of both acquisition and interpretation, new methods are required for organizing and prioritizing the data. These methods would allow an initial level of data analysis to be carried out before committing resources to a particular genetic locus. This JASON study sought to delineate the main problems that must be faced in bioinformatics and to identify information technologies that can help to overcome those problems. While the current influx of data greatly exceeds what biologists have experienced in the past, other scientific disciplines and the commercial sector have been handling much larger datasets for many years. Powerful datamining techniques have been developed in other fields that, with appropriate modification, could be applied to the biological sciences.

  17. Closing Keynote Presentation on the Genomics of Energy and the Environment (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Benner, Stephen [Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology

    2013-01-22

    Steve Benner, a distinguished chemist at the Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology, provides the closing keynote address for the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

  18. Closing Keynote Presentation on the Genomics of Energy and the Environment (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Benner, Stephen [Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology] [Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology

    2012-03-22

    Steve Benner, a distinguished chemist at the Foundation for Applied Molecular Evolution, Westheimer Institute of Science and Technology, provides the closing keynote address for the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

  19. Mapping the Topology of the Human Genome

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Mapping the Topology of the Human Genome Mapping the Topology of the Human Genome Print Monday, 11 July 2016 00:00 Department of Energy facilities such as the Joint Genome ...

  20. Implications of structural genomics target selection strategies...

    Office of Scientific and Technical Information (OSTI)

    target selection strategies: Pfam5000, whole genome, and random approaches Citation Details In-Document Search Title: Implications of structural genomics target selection ...

  1. Genome patent fight erupts

    SciTech Connect (OSTI)

    Roberts, L.

    1991-10-11

    At a Congressional briefing while describing a new project to sequence partially every gene active in the human brain, it was made known that the National Institutes of Health was planning to file patent applications on 1,000 of these sequences a month. The scheme has engendered a firestorm of criticism from genome scientists and project officials alike. The critics argue that these sequences probably can't be patented in the first place - and even if they can, they shouldn't be. The plan would undercut patent protection for those who labor long and hard at the real task of elucidating the function of the proteins encoded by the genes, thereby driving industry away from developing inventions based on that work.

  2. Capabilities: Science Pillars

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Pillars Capabilities: Science Pillars The Lab's four Science Pillars harness our scientific capabilities for national security solutions. What are the Los Alamos National Laboratory's Science Pillars? The Laboratory has established the Science Pillars under four main themes to bring together the Laboratory's diverse array of scientific capabilities and expertise: Information, Science, and Technology Pillar Materials for the Future Pillar Nuclear and Particle Futures Pillar Science of Signatures

  3. Bradbury Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Renewable energy is focus of New Science on Wheels programs offered by Bradbury Science Museum September 21, 2010 Los Alamos National Laboratory is taking science on the road to area schools LOS ALAMOS, New Mexico, September 23, 2010-Los Alamos National Laboratory's Bradbury Science Museum Science on Wheels educational program is offering new, renewable energy-related workshops during the 2010-11 school year. The classes are designed to generate interest in science and renewable energy by

  4. Materials Science and Technology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    MST Materials Science and Technology Providing world-leading, innovative, and agile materials science and technology solutions for national security missions. MST is metallurgy. The Materials Science and Technology Division provides scientific and technical leadership in materials science and technology for Los Alamos National Laboratory. READ MORE MST is engineered materials. The Materials Science and Technology Division provides scientific and technical leadership in materials science and

  5. BES Science Network Requirements

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Network Requirements Report of the Basic Energy Sciences Network Requirements Workshop Conducted June 4-5, 2007 BES Science Network Requirements Workshop Basic Energy Sciences Program Office, DOE Office of Science Energy Sciences Network Washington, DC - June 4 and 5, 2007 ESnet is funded by the US Dept. of Energy, Office of Science, Advanced Scientific Computing Research (ASCR) program. Dan Hitchcock is the ESnet Program Manager. ESnet is operated by Lawrence Berkeley National Laboratory, which

  6. Basic Energy Sciences Reports

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Basic Energy Sciences Reports Basic Energy Sciences Reports The list below of Basic Energy Sciences workshop reports addresses the status of some important research areas that can help identify research directions for a decades-to-century materials and energy strategy. Basic Energy Sciences (BES) Workshop Reports The Energy Challenges Report: New Science for a Secure and Sustainable Energy Future This Basic Energy Sciences Advisory Committee (BESAC) report summarizes a 2008 study by the

  7. Nuclear Materials Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nuclear Materials Science Our multidisciplinary expertise comprises the core actinide materials science and metallurgical capability within the nuclear weapons production and ...

  8. Brookhaven Science Associates, LLC

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Doon L. Gibbs Laboratory Director Brookhaven Science Associates, LLC Brookhaven National ... on November 12, 2014. Brookhaven Science Associates, LLC (BSA) documented this ...

  9. Science and Innovation

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Faces of Science The people behind our science Radical Supercomputing Extreme speeds, big data, powerful simulations 70 Years of Innovation Addressing the nation's most complex...

  10. Fusion Energy Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Fusion Energy Sciences Fusion Energy Sciences Expanding the fundamental understanding of matter at very high temperatures and densities and to build the scientific foundation ...

  11. ARM - Key Science Questions

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Atmospheric System Research (ASR) Earth System Modeling Regional & Global Climate Modeling Terrestrial Ecosystem Science Performance Metrics User Meetings Past ARM Science Team ...

  12. Earth and Environmental Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Reveal climate change drivers and ecosystem impacts Perfect geological greenhouse gas ... Advanced computational Earth sciences Atmospheric, climate and ecosystem science Geology ...

  13. Faces of Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Our People Faces of Science Contact Us Division Leader David Morris Deputy Division Leader ... In the News Research Highlights Faces of Science Our People Resources Periodic Table ...

  14. Stewardship Science Academic Alliances

    National Nuclear Security Administration (NNSA)

    0%2A en NNSA's holds Stewardship Science Academic Programs Annual Review Symposium http:nnsa.energy.govblognnsas-holds-stewardship-science-academic-programs-annual-review-symp...

  15. Science Serving Sustainability

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Goal 8: Science Serving Sustainability LANL takes opportunities to engage the ... ENVIRONMENTAL SUSTAINABILITY GOALS at LANL Community involvement: Andy Erickson and Duncan ...

  16. Science & Technology Review Articles

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NIF & Photon Science News Press Releases Experimental Highlights Efficiency Improvements Science & Technology Meetings and Workshops Papers and Presentations NIF&PS People In the ...

  17. ARM - TWP Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science TWP Related Links Facilities and Instruments Manus Island Nauru Island Darwin, AUS ES&H Guidance Statement Operations Science Field Campaigns Year of Tropical...

  18. Computational Earth Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    6 Computational Earth Science We develop and apply a range of high-performance computational methods and software tools to Earth science projects in support of environmental ...

  19. Bioenergy and Biome Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Bioenergy and Biome Sciences Bioenergy and Biome Sciences Understanding Earth's biomes makes us better stewards of the planet and better able to preserve our health and lifestyles ...

  20. 2005 | U.S. DOE Office of Science (SC)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    5 News News Home Featured Articles 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 Science Headlines Science Highlights Presentations & Testimony News Archives Communications and Public Affairs Contact Information Office of Science U.S. Department of Energy 1000 Independence Ave., SW Washington, DC 20585 P: (202) 586-5430 Featured Articles 2005 Print Text Size: A A A FeedbackShare Page 11.15.05 NSF, USDA and DOE Award $32 Million to Sequence Corn Genome External link Read More

  1. 2009 | U.S. DOE Office of Science (SC)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    9 News News Home Featured Articles 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 Science Headlines Science Highlights Presentations & Testimony News Archives Communications and Public Affairs Contact Information Office of Science U.S. Department of Energy 1000 Independence Ave., SW Washington, DC 20585 P: (202) 586-5430 Featured Articles 2009 Print Text Size: A A A FeedbackShare Page Scientist on a boat 12.28.09Article Scientists Launch the Genomic Encyclopedia of Bacteria and

  2. Whose genome is it, anyway?

    SciTech Connect (OSTI)

    Marshall, E.

    1996-09-27

    The genome program has issued guidelines to ensure that sequencing is done on DNA from diverse sources who have given informed consent and are anonymous. Most current sources don`t meet those criteria. It may be the first question every nonexpert asks on learning about the Human Genome Project: Whose genome are we studying, anyway? It sounds naive, says one government scientist-so naive, in fact, that {open_quotes}we chuckle as we explain that we aren`t sequencing anyone`s genome in particular; we`re sequencing a representative genome{close_quotes} made up of a mosaic of DNA from a variety of anonymous sources. And Bruce Birren, a clone-maker now at the Massachusetts Institute of Technology`s (MIT`s) Whitehead Center for Genome Research says: {open_quotes}We spent many years pooh-poohing the question{close_quotes} of whose genome would be stored in the database. But now that labs have begun working on large stretches of human DNA-aiming to identify all 3 billion base pairs in the genetic code-the question no longer seems to laughable. To the distress of program managers in Bethesda, Maryland, the initial sources of DNA are not as diverse or as anonymous as they had assumed.

  3. The genome of Eucalyptus grandis

    SciTech Connect (OSTI)

    Myburg, Alexander A; Grattapaglia, Dario; Tuskan, Gerald A; Yang, Xiaohan; Priya, Ranjan; Tschaplinski, Timothy J; Ye, Chuyu; Li, Ting

    2014-01-01

    Eucalypts are the world s most widely planted hardwood trees. Their broad adaptability, rich species diversity, fast growth and superior multipurpose wood, have made them a global renewable resource of fiber and energy that mitigates human pressures on natural forests. We sequenced and assembled >94% of the 640 Mbp genome of Eucalyptus grandis into its 11 chromosomes. A set of 36,376 protein coding genes were predicted revealing that 34% occur in tandem duplications, the largest proportion found thus far in any plant genome. Eucalypts also show the highest diversity of genes for plant specialized metabolism that act as chemical defence against biotic agents and provide unique pharmaceutical oils. Resequencing of a set of inbred tree genomes revealed regions of strongly conserved heterozygosity, likely hotspots of inbreeding depression. The resequenced genome of the sister species E. globulus underscored the high inter-specific genome colinearity despite substantial genome size variation in the genus. The genome of E. grandis is the first reference for the early diverging Rosid order Myrtales and is placed here basal to the Eurosids. This resource expands knowledge on the unique biology of large woody perennials and provides a powerful tool to accelerate comparative biology, breeding and biotechnology.

  4. Human genome. 1993 Program report

    SciTech Connect (OSTI)

    Not Available

    1994-03-01

    The purpose of this report is to update the Human Genome 1991-92 Program Report and provide new information on the DOE genome program to researchers, program managers, other government agencies, and the interested public. This FY 1993 supplement includes abstracts of 60 new or renewed projects and listings of 112 continuing and 28 completed projects. These two reports, taken together, present the most complete published view of the DOE Human Genome Program through FY 1993. Research is progressing rapidly toward 15-year goals of mapping and sequencing the DNA of each of the 24 different human chromosomes.

  5. Challenges in Whole-Genome Annotation of Pyrosequenced Eukaryotic Genomes

    SciTech Connect (OSTI)

    Kuo, Alan; Grigoriev, Igor

    2009-04-17

    Pyrosequencing technologies such as 454/Roche and Solexa/Illumina vastly lower the cost of nucleotide sequencing compared to the traditional Sanger method, and thus promise to greatly expand the number of sequenced eukaryotic genomes. However, the new technologies also bring new challenges such as shorter reads and new kinds and higher rates of sequencing errors, which complicate genome assembly and gene prediction. At JGI we are deploying 454 technology for the sequencing and assembly of ever-larger eukaryotic genomes. Here we describe our first whole-genome annotation of a purely 454-sequenced fungal genome that is larger than a yeast (>30 Mbp). The pezizomycotine (filamentous ascomycote) Aspergillus carbonarius belongs to the Aspergillus section Nigri species complex, members of which are significant as platforms for bioenergy and bioindustrial technology, as members of soil microbial communities and players in the global carbon cycle, and as agricultural toxigens. Application of a modified version of the standard JGI Annotation Pipeline has so far predicted ~;;10k genes. ~;;12percent of these preliminary annotations suffer a potential frameshift error, which is somewhat higher than the ~;;9percent rate in the Sanger-sequenced and conventionally assembled and annotated genome of fellow Aspergillus section Nigri member A. niger. Also,>90percent of A. niger genes have potential homologs in the A. carbonarius preliminary annotation. Weconclude, and with further annotation and comparative analysis expect to confirm, that 454 sequencing strategies provide a promising substrate for annotation of modestly sized eukaryotic genomes. We will also present results of annotation of a number of other pyrosequenced fungal genomes of bioenergy interest.

  6. Solar Energy Science Projects

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Projects Curriculum: Solar Power -(thermodynamics, lightelectromagnetic, radiation, energy transformation, conductionconvection, seasons, trigonometry) Grade Level: ...

  7. Nevada Science of Aerospace

    SciTech Connect (OSTI)

    Jason Marcks

    2004-07-01

    Funding was used to operate the educational program entitled the Nevada Science of Aerospace Project.

  8. 2016 Nuclear Science Week

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nuclear Science Week October 17 - 21, 2016 Nuclear Science Week is a national, broadly observed week-long celebration that focuses on all aspects of nuclear science. Events during this week will provide many learning opportunities about contributions, innovation and careers that can be found by exploring nuclear science. 6-22-16

  9. Fundamental Science Applications

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Fundamental Science Applications Fundamental Science Applications Supporing research to understand, predict and ultimately control matter and energy at the electronic, atomic, and molecular levels. Contact thumbnail of Business Development Executive Don Hickmott Business Development Executive Richard P. Feynman Center for Innovation (505) 667-8753 Email Fundamental Science Applications The DOE Basic Energy Science (BES) program supports research to understand, predict and ultimately control

  10. Mapping Our Genes: The Genome Projects: How Big, How Fast

    DOE R&D Accomplishments [OSTI]

    1988-04-01

    For the past 2 years, scientific and technical journals in biology and medicine have extensively covered a debate about whether and how to determine the function and order of human genes on human chromosomes and when to determine the sequence of molecular building blocks that comprise DNA in those chromosomes. In 1987, these issues rose to become part of the public agenda. The debate involves science, technology, and politics. Congress is responsible for ´┐Żwriting the rules´┐Ż of what various federal agencies do and for funding their work. This report surveys the points made so far in the debate, focusing on those that most directly influence the policy options facing the US Congress. Congressional interest focused on how to assess the rationales for conducting human genome projects, how to fund human genome projects (at what level and through which mechanisms), how to coordinate the scientific and technical programs of the several federal agencies and private interests already supporting various genome projects, and how to strike a balance regarding the impact of genome projects on international scientific cooperation and international economic competition in biotechnology. The Office of Technology Assessment (OTA) prepared this report with the assistance of several hundred experts throughout the world.

  11. Mapping our genes: The genome projects: How big, how fast

    SciTech Connect (OSTI)

    none,

    1988-04-01

    For the past 2 years, scientific and technical journals in biology and medicine have extensively covered a debate about whether and how to determine the function and order of human genes on human chromosomes and when to determine the sequence of molecular building blocks that comprise DNA in those chromosomes. In 1987, these issues rose to become part of the public agenda. The debate involves science, technology, and politics. Congress is responsible for /open quotes/writing the rules/close quotes/ of what various federal agencies do and for funding their work. This report surveys the points made so far in the debate, focusing on those that most directly influence the policy options facing the US Congress. Congressional interest focused on how to assess the rationales for conducting human genome projects, how to fund human genome projects (at what level and through which mechanisms), how to coordinate the scientific and technical programs of the several federal agencies and private interests already supporting various genome projects, and how to strike a balance regarding the impact of genome projects on international scientific cooperation and international economic competition in biotechnology. OTA prepared this report with the assistance of several hundred experts throughout the world. 342 refs., 26 figs., 11 tabs.

  12. Science and Suds

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science and Suds Science and Suds WHEN: Jul 18, 2015 12:00 PM - 4:00 PM WHERE: Los Alamos ScienceFest Beer Garden Ashley Pond, Downtown Los Alamos, NM CONTACT: Jessica Privette 505 667-0375 CATEGORY: Bradbury INTERNAL: Calendar Login Science and Suds - Social Event Event Description Conversations with real scientists at the Los Alamos ScienceFest Beer Garden SCIENCE & SUDS Stop by the museum's tent in the beer garden at Ashley Pond during Los Alamos ScienceFest to visit with a scientist

  13. Science & Engineering Capabilities

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Capabilities Science & Engineering Capabilities These capabilities are our science and engineering at work for the national security interest in areas from global climate to cyber security, from nonproliferation to new materials, from clean energy solutions to supercomputing. Accelerators, Electrodynamics┬╗ Energy┬╗ Materials Science┬╗ Bioscience: Bioenergy, Biosecurity, and Health┬╗ Engineering┬╗ National Security, Weapons Science┬╗ Chemical Science┬╗ High-Energy-Density Plasmas, Fluids┬╗

  14. Science Requirements Process

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Requirements Reviews Network Requirements Reviews Requirements Review Reports Case Studies News & Publications ESnet News Publications and Presentations Galleries ESnet Awards and Honors Blog ESnet Live Home ┬╗ Science Engagement ┬╗ Science Requirements Reviews Science Engagement Move your data Programs & Workshops Science Requirements Reviews Network Requirements Reviews Requirements Review Reports Case Studies Contact Us Technical Assistance: 1 800-33-ESnet (Inside US) 1

  15. Committee on Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science SHERWOOD BOEHLERT, CHAIRMAN Ralph M. Hall, Texas, Ranking Democrat www.house.gov/science October 9, 2001 Press Contacts: Heidi Mohlman Tringe (Heidi.Tringe@mail.house.gov) Jeff Donald (Jeffrey.Donald@mail.house.gov) (202)225-4275 BOEHLERT, GRUCCI TO URGE SWIFT CONFIRMATION OF SCIENCE ADVISOR WASHINGTON, DC -- Today, House Science Committee Chairman Sherwood Boehlert (R-NY23) and Committee member Felix J. Grucci (R-NY1) will call for the swift confirmation of Presidential Science Advisor

  16. Bradbury Science Museum - Science on Wheels

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    To stimulate interest in and enthusiasm for science, technology, engineering and mathematics and promote public understanding and appreciation of Los Alamos National Laboratory...

  17. The mouse genome informatics and the mouse genome database

    SciTech Connect (OSTI)

    Maltais, L.J.; Blackburn, R.E.; Bradt, D.W.

    1994-09-01

    The Mouse Genome Database (MGD) is a centralized, comprehensive database of the mouse genome that includes genetic mapping data, comparative mapping data, gene descriptions, mutant phenotype descriptions, strains and allelic polymorphism data, inbred strain characteristics, physical mapping data, and molecular probes and clones data. Data in MGD are obtained from the published literature and by electronic transfer from laboratories working on large backcross panels of mice. MGD provides tools that enable the user to search the database, retrieve data, generate reports, analyze data, annotate records, and build genetic maps. The Encyclopedia of the Mouse Genome provides a graphic user interface to mouse genome data. It consists of software tools including: LinkMap, a graphic display of genetic linkage maps with the ability to magnify regions of high locus density: CytoMap, a graphic display of cytogenetic maps showing banded chromosomes with cytogenetic locations of genes and chromosomal aberrations; CATS, a catalog searching tool for text retrieval of mouse locus descriptions. These software tools provide access to the following data sets: Chromosome Committee Reports, MIT Genome Center data, GBASE reports, Mouse Locus Catalog (MLC), and Mouse Cytogenetic Mapping Data. The MGD is available to the scientific community through the World Wide Web (WWW) and Gopher. In addition GBASE can be accessed via the Internet.

  18. GOLD: The Genomes Online Database

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Kyrpides, Nikos; Liolios, Dinos; Chen, Amy; Tavernarakis, Nektarios; Hugenholtz, Philip; Markowitz, Victor; Bernal, Alex

    Since its inception in 1997, GOLD has continuously monitored genome sequencing projects worldwide and has provided the community with a unique centralized resource that integrates diverse information related to Archaea, Bacteria, Eukaryotic and more recently Metagenomic sequencing projects. As of September 2007, GOLD recorded 639 completed genome projects. These projects have their complete sequence deposited into the public archival sequence databases such as GenBank EMBL,and DDBJ. From the total of 639 complete and published genome projects as of 9/2007, 527 were bacterial, 47 were archaeal and 65 were eukaryotic. In addition to the complete projects, there were 2158 ongoing sequencing projects. 1328 of those were bacterial, 59 archaeal and 771 eukaryotic projects. Two types of metadata are provided by GOLD: (i) project metadata and (ii) organism/environment metadata. GOLD CARD pages for every project are available from the link of every GOLD_STAMP ID. The information in every one of these pages is organized into three tables: (a) Organism information, (b) Genome project information and (c) External links. [The Genomes On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata, Konstantinos Liolios, Konstantinos Mavromatis, Nektarios Tavernarakis and Nikos C. Kyrpides, Nucleic Acids Research Advance Access published online on November 2, 2007, Nucleic Acids Research, doi:10.1093/nar/gkm884]

    The basic tables in the GOLD database that can be browsed or searched include the following information:

    • Gold Stamp ID
    • Organism name
    • Domain
    • Links to information sources
    • Size and link to a map, when available
    • Chromosome number, Plas number, and GC content
    • A link for downloading the actual genome data
    • Institution that did the sequencing
    • Funding source
    • Database where information resides
    • Publication status and information

    • The Genomes and Metagenomes (GEM) Catalogue (first presentation) and The ISA-GCDML Workshop (second presentation) (GSC8 Meeting)

      ScienceCinema (OSTI)

      Field, Dawn [NERC Centre for Ecology and Hydrology]; Sansone, Susanna [EBI

      2011-04-29

      The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding ''Research Coordination Network'' from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Dawn Field of the NERC Centre for Ecology & Hydrology briefly introduces the GEM Catalogue, followed by Susanna Sansone of the European Bioinformatics Institute who talks about the ISA-GCDML workshop at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

    • Physical Sciences 2007 Science & Technology Highlights

      SciTech Connect (OSTI)

      Hazi, A U

      2008-04-07

      The Physical Sciences Directorate applies frontier physics and technology to grand challenges in national security. Our highly integrated and multidisciplinary research program involves collaborations throughout Lawrence Livermore National Laboratory, the National Nuclear Security Administration, the Department of Energy, and with academic and industrial partners. The Directorate has a budget of approximately $150 million, and a staff of approximately 350 employees. Our scientists provide expertise in condensed matter and high-pressure physics, plasma physics, high-energy-density science, fusion energy science and technology, nuclear and particle physics, accelerator physics, radiation detection, optical science, biotechnology, and astrophysics. This document highlights the outstanding research and development activities in the Physical Sciences Directorate that made news in 2007. It also summarizes the awards and recognition received by members of the Directorate in 2007.

  1. Expanding genomics of mycorrhizal symbiosis

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Kuo, Alan; Kohler, Annegret; Martin, Francis M.; Grigoriev, Igor V.

    2014-11-04

    The mycorrhizal symbiosis between soil fungi and plant roots is a ubiquitous mutualism that plays key roles in plant nutrition, soil health, and carbon cycling. The symbiosis evolved repeatedly and independently as multiple morphotypes [e.g., arbuscular mycorrhizae (AM), ectomycorrhizal (ECM)] in multiple fungal clades (e.g., phyla Glomeromycota, Ascomycota, Basidiomycota). The accessibility and cultivability of many mycorrhizal partners make them ideal models for symbiosis studies. Alongside molecular, physiological, and ecological investigations, sequencing led to the first three mycorrhizal fungal genomes, representing two morphotypes and three phyla. The genome of the ECM basidiomycete Laccaria bicolor showed that the mycorrhizal lifestyle can evolvemore┬á┬╗ through loss of plant cell wall-degrading enzymes (PCWDEs) and expansion of lineage-specific gene families such as short secreted protein (SSP) effectors. The genome of the ECM ascomycete Tuber melanosporum showed that the ECM type can evolve without expansion of families as in Laccaria, and thus a different set of symbiosis genes. The genome of the AM glomeromycete Rhizophagus irregularis showed that despite enormous phylogenetic distance and morphological difference from the other two fungi, symbiosis can involve similar solutions as symbiosis-induced SSPs and loss of PCWDEs. The three genomes provide a solid base for addressing fundamental questions about the nature and role of a vital mutualism.┬ź┬áless

  2. Expanding genomics of mycorrhizal symbiosis

    SciTech Connect (OSTI)

    Kuo, Alan; Kohler, Annegret; Martin, Francis M.; Grigoriev, Igor V.

    2014-11-04

    The mycorrhizal symbiosis between soil fungi and plant roots is a ubiquitous mutualism that plays key roles in plant nutrition, soil health, and carbon cycling. The symbiosis evolved repeatedly and independently as multiple morphotypes [e.g., arbuscular mycorrhizae (AM), ectomycorrhizal (ECM)] in multiple fungal clades (e.g., phyla Glomeromycota, Ascomycota, Basidiomycota). The accessibility and cultivability of many mycorrhizal partners make them ideal models for symbiosis studies. Alongside molecular, physiological, and ecological investigations, sequencing led to the first three mycorrhizal fungal genomes, representing two morphotypes and three phyla. The genome of the ECM basidiomycete Laccaria bicolor showed that the mycorrhizal lifestyle can evolve through loss of plant cell wall-degrading enzymes (PCWDEs) and expansion of lineage-specific gene families such as short secreted protein (SSP) effectors. The genome of the ECM ascomycete Tuber melanosporum showed that the ECM type can evolve without expansion of families as in Laccaria, and thus a different set of symbiosis genes. The genome of the AM glomeromycete Rhizophagus irregularis showed that despite enormous phylogenetic distance and morphological difference from the other two fungi, symbiosis can involve similar solutions as symbiosis-induced SSPs and loss of PCWDEs. The three genomes provide a solid base for addressing fundamental questions about the nature and role of a vital mutualism.

  3. PNNL: Staff Search - Fundamental & Computational Sciences Directorate

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Divisions Advanced Computing, Mathematics & Data Atmospheric Sciences & Global Change Biological Sciences Physical Sciences User Facilities Environmental Molecular Sciences ...

  4. Mapping the Topology of the Human Genome

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Mapping the Topology of the Human Genome Mapping the Topology of the Human Genome Print Monday, 11 July 2016 00:00 Department of Energy facilities such as the Joint Genome Institute provide us with DNA sequences for entire genomes, most famously the human genome. However, a DNA sequence alone isn't sufficient to determine how a gene will function in a cell, or if indeed it will be functional at all. We also need to know the spatial 3D arrangement of the genome in the nucleus. A single strand of

  5. ARM - AMF Science Questions

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Questions Science Plan (PDF, 4.4M) Rob Wood Website Outreach Backgrounders English Version (PDF, 363K) Portuguese Version (PDF, 327K) AMF Posters, 2009 English Version...

  6. Science On Tap

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science On Tap Science On Tap WHEN: Mar 19, 2015 5:30 PM - 7:00 PM WHERE: UnQuarked Wine Room 145 Central Park Square, Los Alamos, NM 87544 CONTACT: Jessica Privette 505 667-0375...

  7. Science On Tap

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science On Tap Science On Tap WHEN: Nov 19, 2015 5:30 PM - 7:00 PM WHERE: UnQuarked Wine Room 145 Central Park Square, Los Alamos, NM 87544 USA SPEAKER: Ray Newell, Quantum...

  8. Science on Tap

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    January Science on Tap Science on Tap WHEN: Jan 15, 2015 5:30 PM - 7:00 PM WHERE: UnQuarked The Wine Room, 145 Central Park Square, Los Alamos CONTACT: Jessica Privette 505...

  9. National Science Bowl

    Broader source: Energy.gov [DOE]

    The U.S. Department of Energy (DOE) National Science Bowl is a nationwide academic competition that tests students' knowledge in all areas of science. High school and middle school students are...

  10. Middle School Science Bowl

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    2015 February Middle School Science Bowl Middle School Science Bowl WHEN: Feb 28, 2015 8:00 AM - 4:00 PM WHERE: Highland High School 4700 Coal Ave SE, Albuquerque, NM...

  11. Enhancer Identification through Comparative Genomics

    SciTech Connect (OSTI)

    Visel, Axel; Bristow, James; Pennacchio, Len A.

    2006-10-01

    With the availability of genomic sequence from numerousvertebrates, a paradigm shift has occurred in the identification ofdistant-acting gene regulatory elements. In contrast to traditionalgene-centric studies in which investigators randomly scanned genomicfragments that flank genes of interest in functional assays, the modernapproach begins electronically with publicly available comparativesequence datasets that provide investigators with prioritized lists ofputative functional sequences based on their evolutionary conservation.However, although a large number of tools and resources are nowavailable, application of comparative genomic approaches remains far fromtrivial. In particular, it requires users to dynamically consider thespecies and methods for comparison depending on the specific biologicalquestion under investigation. While there is currently no single generalrule to this end, it is clear that when applied appropriately,comparative genomic approaches exponentially increase our power ingenerating biological hypotheses for subsequent experimentaltesting.

  12. Information Science, Computing, Applied Math

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Information Science, Computing, Applied Math Information Science, Computing, Applied Math National security depends on science and technology. The United States relies on Los ...

  13. Science of Signatures - Past Programs

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Institute Science of Signatures - Past Programs Science of Signatures Program Science of Signatures - Past Programs Contact Institute Director Charles Farrar (505) 665-0860...

  14. Science Cloud 2011

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Cloud 2011 Science Cloud 2011 June 17, 2011 The Magellan teams at NERSC and Argonne recently presented a joint paper detailing their progress and conclusions. At Science Cloud 2011: The Second Workshop on Scientific Cloud Computing, in a paper titled "Magellan: Experiences from a Science Cloud" (PDF, 320KB), lead author Lavanya Ramakrishnan outlined the groups' most recent achievements and conclusions, including a successful run of real-time data analysis for the STAR

  15. NERSC Science Engagements

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NERSC Science Engagements NERSC Science Engagements At NERSC, science comes first. NERSC systems and services are designed to enable and support cutting-edge research within the U.S. Department of Energy's Office of Science. NERSC engages with the scientific community in many ways both formally and informally. Among the more formal mechanisms are the NERSC Requirements Reviews, which have now become the DOE Exascale Requirements Reviews jointly with the Argonne and Oak Ridge Leadership Computing

  16. ORISE: Science Education Programs

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Education Programs The U.S. Department of Energy (DOE) and more than a dozen other federal agencies rely on the Oak Ridge Institute for Science and Education (ORISE) to help meet future needs in critical science and technology areas through the recruitment and training of our nation's next generation of scientists and engineers. To meet these pressing demands, ORISE assesses current science and technology labor needs and then designs and implements programs that meet the unique goals of

  17. Office of Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Office of Science Office of Science Enabling remarkable discoveries and tools that transform our understanding of energy and matter and advance national, economic, and energy security. Advanced Scientific Computing Research┬╗ Basic Energy Sciences┬╗ Biological and Environmental Research┬╗ Fusion Energy Sciences┬╗ High Energy Physics┬╗ Nuclear Physics┬╗ Turning Windows into Solar Panels Turning Windows into Solar Panels READ MORE Scientists study glaciers in McMurdo Dry Valleys in Antarctica

  18. ARM - Science Questions

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Questions Related Links MC3E Home News News & Press MC3E Backgrounder (PDF, 1.61MB) SGP Images ARM flickr site Field Blog ARM Data Discovery Browse Data Deployment Operations Measurements Science Plan (PDF, 3.85 MB) Featured Data Plots SGP Data Plots (all) Experiment Planning Steering Committee Science Questions MC3E Proposal Abstract and Related Campaigns Meetings Cloud Life Cycle Working Group Contacts Michael Jensen, Lead Scientist Science Questions This experiment seeks to use a

  19. ARM - Science Questions

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Questions Related Links SPARTICUS Home AAF Home Deployment Operations Measurements SGP Data Plots NASA Data Plots ARM Data Discovery Browse Data Experiment Planning SPARTICUS Proposal Abstract Science Questions Science and Operations (PDF, 1.01M) SPARTICUS Wiki News News & Press Backgrounder (PDF, 269K) Contacts Gerald Mace, Lead Scientist Science Questions Scatter plot of ice crystal number concentration from two different probes used during TWP-ICE. The differences are significant

  20. ORISE: Science Education Events

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Education Events Science Education Events Recognizing that vast improvements in science, technology, engineering and math are key to innovation and economic growth, the Oak Ridge Institute for Science and Education (ORISE) manages high-profile local and national education and research initiatives. For example, scholarly competitions, summer education workshops and teacher professional development programs create excitement and inspire educators and students to pursue interests in

  1. Weaving Community and Science

    Broader source: Energy.gov [DOE]

    Weaving Community and Science: Former Summer Intern Is Investigating Plant Uptake of Contaminants on Disposal Cell Covers

  2. Frontiers in Science Archive

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Frontiers in Science Lectures ┬╗ Frontiers in Science Archive Frontiers in Science Archive x LInda Anderman (505) 665-9196 Email The Frontiers in Science lecture series are a public service of the Los Alamos National Laboratory Fellows. Fellows are appointed by the Laboratory Director in recognition of sustained outstanding contributions and exceptional promise for continued professional achievement. All lectures are open to the public and free of charge. PAST LECTURES 2015 August Beyond Pluto:

  3. Bradbury Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Bradbury Science Museum Bradbury Science Museum Providing a window into the history of LANL, its national security mission, and the broad range of exciting science and technology research programs undertaken to improve our nation's future. June 13, 2012 Young visitor shakes the hand of an Oppenheimer statue J. Robert Oppenheimer is a welcoming presence in the Bradbury Science Museum's History Gallery. Visitors go on to explore the Laboratory's beginnings during the Manhattan Project through

  4. Judicial Science School

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Judicial Science School Judicial Science School The goal of Los Alamos Judicial Science School is to provide judges with knowledge and experience that will enhance their ability to evaluate whether scientific arguments meet the threshold requirements of admissibility. Contacts NSEC Director David L. Clark (505) 665-0983 Email Engineering Institute Director Charles Farrar (505) 665-0860 Email Executive Administrator Ellie Vigil (505) 667-2818 Email Judicial Science School Developed through close

  5. Earth, Space Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Earth, Space Sciences Earth, Space Sciences National security depends on science and technology. The United States relies on Los Alamos National Laboratory for the best of both. No place on Earth pursues a broader array of world-class scientific endeavors. Climate, Ocean and Sea Ice Modeling (COSIM)┬╗ Earth and Environmental Sciences Division┬╗ Intelligence and Space Research┬╗ Earth Read caption + A team of scientists is working to understand how local changes in hydrology might bring about

  6. Bradbury Science Museum Association

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Bradbury Science Museum Association 108 Central Park Square #208 Los Alamos, NM 87544 Dear Los Alamos National Laboratory Employee, member of the Los Alamos Community, or other friend of the Bradbury Science Museum, I am writing today to tell you about an exciting new opportunity! As of May 1, 2016, we are launching the Bradbury Science Museum Association (BSMA). Our purpose is to amplify the Bradbury Science Museum's (BSM) mission and visitor experience as its official nonprofit partner,

  7. Science of Signatures

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science of Signatures Science of Signatures (SoS) The Lab's four Science Pillars harness our scientific capabilities for national security solutions. Contacts Pillar Champion Nancy Sauer Email Pillar Contact Gene Peterson Email Science of Signatures (SoS) Overview In its broadest and simplest sense, a "signature" is any information that is unique, recognizable, and useful. A handwritten mark as a means of demonstrating authenticity is a familiar example, as is the pattern variation

  8. Science-Driven Network

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science-Driven Network Requirements for ESnet Update to the 2002 Office of Science Networking Requirements Workshop Report February 21, 2006 1-1 Science-Driven Network Requirements for ESnet Update to the 2002 Office of Science Networking Requirements Workshop Report February 21, 2006 Contributors Paul Adams, LBNL (Advanced Light Source) Shane Canon, ORNL (NLCF) Steven Carter, ORNL (NLCF) Brent Draney, LBNL (NERSC) Martin Greenwald, MIT (Magnetic Fusion Energy) Jason Hodges, ORNL (Spallation

  9. Basic Energy Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Basic Energy Sciences Basic Energy Sciences Supporing research to understand, predict and ultimately control matter and energy at the electronic, atomic, and molecular levels. Get Expertise Toni Taylor (505) 665-0030 Email Quanxi Jia (505) 667-2716 Email David Morris (505) 665-6487 Email Claudia Mora (505) 665-7832 Email Research fosters fundamental scientific discoveries to meet energy, environmental, and national security challenges The DOE Office of Science's Basic Energy Sciences program

  10. Bradbury Science Museum Association

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Museum Association Introducing Bradbury Science Museum Association The Bradbury Science Museum Association is a separate, not-for-profit entity envisioned to enhance the educational work of the museum. Contact Us thumbnail of Bradbury Science Museum (505) 667-4444 Email We welcome the Bradbury Science Museum Association as our partner in education. Join the BSMA and recieve all the benefits it provides. The pdf application is here. There are also Sponsorship and Business Partnerships available.

  11. Computational Science and Engineering

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Computational Science and Engineering NETL's Computational Science and Engineering competency consists of conducting applied scientific research and developing physics-based simulation models, methods, and tools to support the development and deployment of novel process and equipment designs. Research includes advanced computations to generate information beyond the reach of experiments alone by integrating experimental and computational sciences across different length and time scales. Specific

  12. Strategies and tools for whole genome alignments

    SciTech Connect (OSTI)

    Couronne, Olivier; Poliakov, Alexander; Bray, Nicolas; Ishkhanov,Tigran; Ryaboy, Dmitriy; Rubin, Edward; Pachter, Lior; Dubchak, Inna

    2002-11-25

    The availability of the assembled mouse genome makespossible, for the first time, an alignment and comparison of two largevertebrate genomes. We have investigated different strategies ofalignment for the subsequent analysis of conservation of genomes that areeffective for different quality assemblies. These strategies were appliedto the comparison of the working draft of the human genome with the MouseGenome Sequencing Consortium assembly, as well as other intermediatemouse assemblies. Our methods are fast and the resulting alignmentsexhibit a high degree of sensitivity, covering more than 90 percent ofknown coding exons in the human genome. We have obtained such coveragewhile preserving specificity. With a view towards the end user, we havedeveloped a suite of tools and websites for automatically aligning, andsubsequently browsing and working with whole genome comparisons. Wedescribe the use of these tools to identify conserved non-coding regionsbetween the human and mouse genomes, some of which have not beenidentified by other methods.

  13. History of the DOE Human Genome Program

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    of the DOE Human Genome Program The following history is taken from the U.S. Department of Energy 1991-91 Human Genome Program Report (June 1992). This is an archived item. A brief ...

  14. Science On Tap

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science On Tap Science On Tap WHEN: Mar 19, 2015 5:30 PM - 7:00 PM WHERE: UnQuarked Wine Room 145 Central Park Square, Los Alamos, NM 87544 CONTACT: Jessica Privette 505 667-0375 CATEGORY: Bradbury INTERNAL: Calendar Login Science on Tap March Event Description Science On Tap happens every third Thursday of the month, featuring a new topic each week. It begins with an informal 15-minute talk and is followed by a lively group discussion. This installment of "Science on Tap" will be held

  15. Science and Technology Day

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science and Technology Day Science and Technology Day February 24, 2015 Tuesday, Feb. 24 Berkeley Lab Building 50 Auditorium Attendance is open to anyone. Remote streaming is available at hosting.epresence.tv/lbl (Broadcast only) Time Title Speaker 8:15 Registration 8:55 Welcome Sudip Dosanjh, NERSC Director 9:00 The Year in Science at NERSC Richard Gerber, NERSC Senior Science Advisor 9:30 Science Keynote: Efficient modeling of laser-plasma accelerators using the ponderomotive-based code

  16. BES Science Network Requirements

    SciTech Connect (OSTI)

    Biocca, Alan; Carlson, Rich; Chen, Jackie; Cotter, Steve; Tierney, Brian; Dattoria, Vince; Davenport, Jim; Gaenko, Alexander; Kent, Paul; Lamm, Monica; Miller, Stephen; Mundy, Chris; Ndousse, Thomas; Pederson, Mark; Perazzo, Amedeo; Popescu, Razvan; Rouson, Damian; Sekine, Yukiko; Sumpter, Bobby; Dart, Eli; Wang, Cai-Zhuang -Z; Whitelam, Steve; Zurawski, Jason

    2011-02-01

    The Energy Sciences Network (ESnet) is the primary provider of network connectivityfor the US Department of Energy Office of Science (SC), the single largest supporter of basic research in the physical sciences in the United States. In support of the Office ofScience programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs that it serves. This focus has helped ESnet to be a highly successful enabler of scientific discovery for over 20 years.

  17. Science DMZ at the University of Florida

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    UF Science Engagement Move your data Programs & Workshops Science Requirements Reviews Case Studies OSCARS Case Studies Science DMZ Case Studies Science DMZ @ UF Science DMZ @ CU ...

  18. Science DMZ Implemented at CU Boulder

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    CU Science Engagement Move your data Programs & Workshops Science Requirements Reviews Case Studies OSCARS Case Studies Science DMZ Case Studies Science DMZ @ UF Science DMZ @ CU ...

  19. GDB - Human Genome Database final report

    SciTech Connect (OSTI)

    Talbot, C. Conover, Jr.

    2002-01-08

    This is the DOE final report for the GDB, Human Genome Database, project at the Johns Hopkins University.

  20. Materials Science Research | Materials Science | NREL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Research For photovoltaics and other energy applications, NREL's primary research in materials science includes the following core competencies. A photo of laser light rays going in various directions atop a corrugated metal substrate Materials Physics Through materials growth and characterization, we seek to understand and control fundamental electronic and optical processes in semiconductors. An image of multiple, interconnecting red and blue particles Electronic Structure Theory We

  1. Computational Materials Science | Materials Science | NREL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Computational Materials Science An image of interconnecting, sphere- and square-shaped particles that appears to be floating in space NREL's computational materials science capabilities span many research fields and interests. Electronic, Optical, and Transport Properties of Photovoltaic Materials Material properties and defect physics of Si, CdTe, III-V, CIGS, CZTS, and hybrid perovskite compounds Reconstruction of, and defect formation on, semiconductor surfaces Electronic and transport

  2. Complete genome sequences for the anaerobic, extremely thermophilic...

    Office of Scientific and Technical Information (OSTI)

    Complete genome sequences for the anaerobic, extremely thermophilic plant ... Title: Complete genome sequences for the anaerobic, extremely thermophilic plant ...

  3. Synchrotron Radiation in Polymer Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Synchrotron Radiation in Polymer Science Synchrotron Radiation in Polymer Science March 30-April 2, 2012; San Francisco...

  4. Synchrotron Radiation in Polymer Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Synchrotron Radiation in Polymer Science Synchrotron Radiation in Polymer Science March 30-April 2, 2012; San Francisco

  5. Katie Antypas! NERSC Deputy for Data Science The Convergence

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Convergence of HPC and Data Science at NERSC - 1 - NERSC has been supporting data intensive science for a long time Palomar Transient Factory Supernova Planck Satellite Cosmic Microwave Background Radia?on Alice Large Hadron Collider Atlas Large Hadron Collider Dayabay Neutrinos ALS Light Source LCLS Light Source Joint Genome Ins?tute Bioinforma?cs - 2 - NERSC users import more data than they export! Impor?ng more than 1PB/ month Expor?ng more than 1PB/ month - 3 - Historically NERSC has

  6. The Globus Galaxies Platform. Delivering Science Gateways as a Service

    SciTech Connect (OSTI)

    Madduri, Ravi; Chard, Kyle; Chard, Ryan; Lacinski, Lukasz; Rodriguez, Alex; Sulakhe, Dinanath; Kelly, David; Dave, Utpal; Foster, Ian

    2015-04-29

    We use public cloud computers to host sophisticated scientific data; software is then used to transform scientific practice by enabling broad access to capabilities previously available only to the few. The primary obstacle to more widespread use of public clouds to host scientific software (ÔÇścloud-based science gatewaysÔÇÖ) has thus far been the considerable gap between the specialized needs of science applications and the capabilities provided by cloud infrastructures. We describe here a domain-independent, cloud-based science gateway platform, the Globus Galaxies platform, which overcomes this gap by providing a set of hosted services that directly address the needs of science gateway developers. The design and implementation of this platform leverages our several years of experience with Globus Genomics, a cloud-based science gateway that has served more than 200 genomics researchers across 30 institutions. Building on that foundation, we have also implemented a platform that leverages the popular Galaxy system for application hosting and workflow execution; Globus services for data transfer, user and group management, and authentication; and a cost-aware elastic provisioning model specialized for public cloud resources. We describe here the capabilities and architecture of this platform, present six scientific domains in which we have successfully applied it, report on user experiences, and analyze the economics of our deployments. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

  7. Genome informatics: Requirements and challenges

    SciTech Connect (OSTI)

    Robbins, R.J.

    1993-12-31

    Informatics of some kind will play a role in every aspect of the Human Genome Project (HGP); data acquisition, data analysis, data exchange, data publication, and data visualization. What are the real requirements and challenges? The primary requirement is clear thinking and the main challenge is design. If good design is lacking, the price will be failure of genome informatics and ultimately failure of the genome project itself. Scientists need good designs to deliver the tools necessary for acquiring and analyzing DNA sequences. As these tools become more efficient, they will need new tools for comparative genomic analyses. To make the tools work, the scientists will need to address and solve nomenclature issues that are essential, if also tedious. They must devise systems that will scale gracefully with the increasing flow of data. The scientists must be able to move data easily from one system to another, with no loss of content. As scientists, they will have failed in their responsibility to share results, should repeating experiments ever become preferable to searching the literature. Their databases must become a new kind of scientific literature and the scientists must develop ways to make electronic data publishing as routine as traditional journal publishing. Ultimately, they must build systems so advanced that they are virtually invisible. In summary, the HGP can be considered the most ambitious, most audacious information-management project ever undertaken. In the HGP, computers will not merely serve as tools for cataloging existing knowledge. Rather, they will serve as instruments, helping to create new knowledge by changing the way the scientists see the biological world. Computers will allow them to see genomes, just as radio telescopes let them see quasars and electron microscopes let them see viruses.

  8. Neutron and Nuclear Science News

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    News Recent news and events related to neutron and nuclear science at LANSCE. Neutron and Nuclear Science News Nuclear and Materials Science Research at LANSCE Nuclear science observations and opportunities at the Los Alamos Neutron Science Center Links Neutron and Nuclear Science News Media Links Profiles Events at LANSCE LAPIS (LANSCE Proposal Intake System

  9. The ecoresponsive genome of Daphnia pulex

    SciTech Connect (OSTI)

    Colbourne, John K.; Pfrender, Michael E.; Gilbert, Donald; Thomas, W. Kelley; Tucker, Abraham; Oakley, Todd H.; Tokishita, Shinichi; Aerts, Andrea; Arnold, Georg J.; Basu, Malay Kumar; Bauer, Darren J.; Caceres, Carla E.; Carmel, Liran; Casola, Claudio; Choi, Jeong-Hyeon; Detter, John C.; Dong, Qunfeng; Dusheyko, Serge; Eads, Brian D.; Frohlich, Thomas; Geiler-Samerotte, Kerry A.; Gerlach, Daniel; Hatcher, Phil; Jogdeo, Sanjuro; Krijgsveld, Jeroen; Kriventseva, Evgenia V; K├╝ltz, Dietmar; Laforsch, Christian; Lindquist, Erika; Lopez, Jacqueline; Manak, Robert; Muller, Jean; Pangilinan, Jasmyn; Patwardhan, Rupali P.; Pitluck, Samuel; Pritham, Ellen J.; Rechtsteiner, Andreas; Rho, Mina; Rogozin, Igor B.; Sakarya, Onur; Salamov, Asaf; Schaack, Sarah; Shapiro, Harris; Shiga, Yasuhiro; Skalitzky, Courtney; Smith, Zachary; Souvorov, Alexander; Sung, Way; Tang, Zuojian; Tsuchiya, Dai; Tu, Hank; Vos, Harmjan; Wang, Mei; Wolf, Yuri I.; Yamagata, Hideo; Yamada, Takuji; Ye, Yuzhen; Shaw, Joseph R.; Andrews, Justen; Crease, Teresa J.; Tang, Haixu; Lucas, Susan M.; Robertson, Hugh M.; Bork, Peer; Koonin, Eugene V.; Zdobnov, Evgeny M.; Grigoriev, Igor V.; Lynch, Michael; Boore, Jeffrey L.

    2011-02-04

    This document provides supporting material related to the sequencing of the ecoresponsive genome of Daphnia pulex. This material includes information on materials and methods and supporting text, as well as supplemental figures, tables, and references. The coverage of materials and methods addresses genome sequence, assembly, and mapping to chromosomes, gene inventory, attributes of a compact genome, the origin and preservation of Daphnia pulex genes, implications of Daphnia's genome structure, evolutionary diversification of duplicated genes, functional significance of expanded gene families, and ecoresponsive genes. Supporting text covers chromosome studies, gene homology among Daphnia genomes, micro-RNA and transposable elements and the 46 Daphnia pulex opsins. 36 figures, 50 tables, 183 references.

  10. Genome Improvement at JGI-HAGSC

    SciTech Connect (OSTI)

    Grimwood, Jane; Schmutz, Jeremy J.; Myers, Richard M.

    2012-03-03

    Since the completion of the sequencing of the human genome, the Joint Genome Institute (JGI) has rapidly expanded its scientific goals in several DOE mission-relevant areas. At the JGI-HAGSC, we have kept pace with this rapid expansion of projects with our focus on assessing, assembling, improving and finishing eukaryotic whole genome shotgun (WGS) projects for which the shotgun sequence is generated at the Production Genomic Facility (JGI-PGF). We follow this by combining the draft WGS with genomic resources generated at JGI-HAGSC or in collaborator laboratories (including BAC end sequences, genetic maps and FLcDNA sequences) to produce an improved draft sequence. For eukaryotic genomes important to the DOE mission, we then add further information from directed experiments to produce reference genomic sequences that are publicly available for any scientific researcher. Also, we have continued our program for producing BAC-based finished sequence, both for adding information to JGI genome projects and for small BAC-based sequencing projects proposed through any of the JGI sequencing programs. We have now built our computational expertise in WGS assembly and analysis and have moved eukaryotic genome assembly from the JGI-PGF to JGI-HAGSC. We have concentrated our assembly development work on large plant genomes and complex fungal and algal genomes.

  11. Insights from Human/Mouse genome comparisons

    SciTech Connect (OSTI)

    Pennacchio, Len A.

    2003-03-30

    Large-scale public genomic sequencing efforts have provided a wealth of vertebrate sequence data poised to provide insights into mammalian biology. These include deep genomic sequence coverage of human, mouse, rat, zebrafish, and two pufferfish (Fugu rubripes and Tetraodon nigroviridis) (Aparicio et al. 2002; Lander et al. 2001; Venter et al. 2001; Waterston et al. 2002). In addition, a high-priority has been placed on determining the genomic sequence of chimpanzee, dog, cow, frog, and chicken (Boguski 2002). While only recently available, whole genome sequence data have provided the unique opportunity to globally compare complete genome contents. Furthermore, the shared evolutionary ancestry of vertebrate species has allowed the development of comparative genomic approaches to identify ancient conserved sequences with functionality. Accordingly, this review focuses on the initial comparison of available mammalian genomes and describes various insights derived from such analysis.

  12. National Security, Weapons Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    National Security, Weapons Science National Security, Weapons Science National security depends on science and technology. The United States relies on Los Alamos National Laboratory for the best of both. No place on Earth pursues a broader array of world-class scientific endeavors. CoMuEx┬╗ Explosives Center┬╗ Dual-Axis Radiographic Hydrodynamic Test Facility (DARHT) The Dual-Axis Radiographic Hydrodynamic Test Facility at Los Alamos National Laboratory is part of the DOE's stockpile stewardship

  13. ARM - NSA Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AlaskaNSA Science NSA Related Links Virtual Tour Facilities and Instruments Barrow Atqasuk Oliktok Point (AMF3) ES&H Guidance Statement Operations Science Field Campaigns Visiting the Site NSA Fact Sheet Images Information for Guest Scientists Contacts NSA Science Scientific objectives for the NSA/AAO site are provided below: Provide the comprehensive data sets necessary to develop and test continually improved algorithms for GCMs to describe radiative transfer and cloud processes at high

  14. ARM - SGP Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science SGP Related Links Virtual Tour Facilities and Instruments Central Facility Boundary Facility Extended Facility Intermediate Facility Radiometric Calibration Facility Geographic Information ES&H Guidance Statement Operations Science Field Campaigns Visiting the Site Summer Training SGP Fact Sheet Images Information for Guest Scientists Contacts SGP Science Overall Objectives The primary goal of the Southern Great Plains (SGP) site is to produce data adequate to support significant

  15. ARM - Science Questions

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Questions Related Links CLASIC Home AAF Home ARM Data Discovery Browse Data Post-Campaign CLASIC/CHAPS Special Session at AGU Annual Meeting, December 15-19 CLASIC Workshop, March 26-27 Data Sets Deployment Resources Measurement Platforms PNNL WRF-CuP Forecast Cloud Physics Lidar MODIS Airborne Simulator Data Mesonet Monitoring ARM Data Plots Experiment Planning CLASIC Proposal Abstract Science Questions Science and Implementation Plan (pdf) Measurement Platforms (pdf) CLASIC-Land

  16. ARM - Science Questions

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Questions Related Links ISDAC Home AAF Home AVP Aircraft Instrumentation, October 14-16, 2008 ARM Data Discovery Browse Data Post-Campaign Data Sets Flight Summary Table (PDF, 440K) ISDAC Wiki Mission Summary Journal Deployment Resources NSA Site ARM Data Plots Quick Links Experiment Planning ISDAC Proposal Abstract Full Proposal (pdf, 1,735K) Science Questions Science Overview Document for ISDAC (pdf, 525K) ISDAC Flight Planning Document (PDF, 216K) Collaborations Logistics Measurements

  17. Information Sciences and Technology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Information Sciences and Technology Information Sciences and Technology National security depends on science and technology. The United States relies on Los Alamos National Laboratory for the best of both. No place on Earth pursues a broader array of world-class scientific endeavors. Contact thumbnail of Business Development Executive Steve Stringer Business Development Executive Richard P. Feynman Center for Innovation (505) 660-2177 Email Los Alamos leverages advances in theory, algorithms,

  18. Home | ScienceCinema

    Broader source: All U.S. Department of Energy (DOE) Office Webpages

    SCIENCECINEMA Toggle Navigation Home About ScienceCinema FAQ Contact Us ScienceCinema Database Searchable Videos Showcasing DOE Research Search DOE ScienceCinema for Multimedia Find + Fielded Search Audio Search ├Ś Fielded Search Title: Description/Abstract: Bibliographic Data: Author/Speaker: Name Name ORCID Media Type: All Audio Video Subject: Identifier Numbers: Media Source: All DOE CERN Research Org.: Sponsoring Org.: Publication Date: Publication Date Until to System Entry Date:

  19. Frontiers in Science Lectures

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Frontiers in Science Lectures Frontiers in Science Lectures x Community Partnerships Office (505) 665-4400 The Frontiers in Science lecture series are a public service of the Los Alamos National Laboratory Fellows. Fellows are appointed by the Laboratory Director in recognition of sustained outstanding contributions and exceptional promise for continued professional achievement. All lectures are open to the public and free of charge. LATEST LECTURE Hacking Photosynthesis: Growing Plants to Power

  20. Science Briefs - 2011

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Briefs - 2011 Read in detail about specific Los Alamos science achievements, and the honors our scientists are accruing. The mineral "Terrywallaceite" "Terrywallaceite" now in official roster of known minerals The slender, needle-like metallic-black crystals of Terrywallaceite were found in the Julcani Mining District of Peru. - 6/8/11 submit Science Briefs - 2011 June Contact Us Communications Office (505) 667-7000 Fast Facts 2016 People Total employees: 10,500 Los

  1. Science Briefs - 2012

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Briefs - 2012 Read in detail about specific Los Alamos science achievements, and the honors our scientists are accruing. Los Alamos National Laboratory sits on top of a once-remote mesa in northern New Mexico with the Jemez mountains as a backdrop to research and innovation covering multi-disciplines from bioscience, sustainable energy sources, to plasma physics and new materials. AAAS elects four LANL scientists as Fellows The American Association for the Advancement of Science has

  2. Science satellites seek Santa

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science satellites seek Santa Science satellites seek Santa Los Alamos scientists will use two advanced science satellites to mark the course taken by the elfin traveler. December 16, 2009 Los Alamos National Laboratory sits on top of a once-remote mesa in northern New Mexico with the Jemez mountains as a backdrop to research and innovation covering multi-disciplines from bioscience, sustainable energy sources, to plasma physics and new materials. Los Alamos National Laboratory sits on top of a

  3. Materials Science Applications

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Materials Science Applications VASP VASP is a plane wave ab initio code for quantum mechanical molecular dynamics. It is highly scalable and shows very good parallel performance for a variety of chemical and materials science calculations. VASP is available to NERSC users who already have a VASP license. Read More ┬╗ Quantum ESPRESSO/PWscf Quantum Espresso is an integrated suite of computer codes for electronic structure calculations and materials modeling at the nanoscale. It builds on

  4. Huffington Post Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Huffington Post Science Read about what other news sources are saying about Los Alamos science achievements. Making solar power more affordable Making solar power more affordable Although the goal of cheap, plentiful energy from the sun turns out to be a work in progress, not a settled achievement, recent research breakthroughs are helping to deliver on the promise of truly "cheap solar," with several surprising side benefits. - 8/30/16 Human-gorilla divergence may have

  5. Huffington Post Science - 2016

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science ┬╗ 2016 Huffington Post Science - 2016 Read about what other news sources are saying about Los Alamos science achievements. Making solar power more affordable Making solar power more affordable Although the goal of cheap, plentiful energy from the sun turns out to be a work in progress, not a settled achievement, recent research breakthroughs are helping to deliver on the promise of truly "cheap solar," with several surprising side benefits. - 8/30/16 Human-gorilla divergence

  6. Biomolecular Science (Fact Sheet)

    SciTech Connect (OSTI)

    Not Available

    2012-04-01

    A brief fact sheet about NREL Photobiology and Biomolecular Science. The research goal of NREL's Biomolecular Science is to enable cost-competitive advanced lignocellulosic biofuels production by understanding the science critical for overcoming biomass recalcitrance and developing new product and product intermediate pathways. NREL's Photobiology focuses on understanding the capture of solar energy in photosynthetic systems and its use in converting carbon dioxide and water directly into hydrogen and advanced biofuels.

  7. One Bacterial Cell, One Complete Genome

    SciTech Connect (OSTI)

    Woyke, Tanja; Tighe, Damon; Mavrommatis, Konstantinos; Clum, Alicia; Copeland, Alex; Schackwitz, Wendy; Lapidus, Alla; Wu, Dongying; McCutcheon, John P.; McDonald, Bradon R.; Moran, Nancy A.; Bristow, James; Cheng, Jan-Fang

    2010-04-26

    While the bulk of the finished microbial genomes sequenced to date are derived from cultured bacterial and archaeal representatives, the vast majority of microorganisms elude current culturing attempts, severely limiting the ability to recover complete or even partial genomes from these environmental species. Single cell genomics is a novel culture-independent approach, which enables access to the genetic material of an individual cell. No single cell genome has to our knowledge been closed and finished to date. Here we report the completed genome from an uncultured single cell of Candidatus Sulcia muelleri DMIN. Digital PCR on single symbiont cells isolated from the bacteriome of the green sharpshooter Draeculacephala minerva bacteriome allowed us to assess that this bacteria is polyploid with genome copies ranging from approximately 200?900 per cell, making it a most suitable target for single cell finishing efforts. For single cell shotgun sequencing, an individual Sulcia cell was isolated and whole genome amplified by multiple displacement amplification (MDA). Sanger-based finishing methods allowed us to close the genome. To verify the correctness of our single cell genome and exclude MDA-derived artifacts, we independently shotgun sequenced and assembled the Sulcia genome from pooled bacteriomes using a metagenomic approach, yielding a nearly identical genome. Four variations we detected appear to be genuine biological differences between the two samples. Comparison of the single cell genome with bacteriome metagenomic sequence data detected two single nucleotide polymorphisms (SNPs), indicating extremely low genetic diversity within a Sulcia population. This study demonstrates the power of single cell genomics to generate a complete, high quality, non-composite reference genome within an environmental sample, which can be used for population genetic analyzes.

  8. Science On Tap

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science On Tap Science On Tap WHEN: Apr 16, 2015 5:30 PM - 7:00 PM WHERE: UnQuarked Wine Room 145 Central Park Square, Los Alamos, New Mexico 87544, USA CONTACT: Jessica Privette 505 667-0375 CATEGORY: Bradbury INTERNAL: Calendar Login Science On Tap Presenters Aditya Mohite and Wanyi Nie Event Description Science On Tap happens every third Thursday of the month, featuring a new topic each week. It begins with an informal 15-minute talk and is followed by a lively group discussion. This

  9. Science On Tap

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science On Tap Science On Tap WHEN: Feb 19, 2015 5:30 PM - 7:00 PM WHERE: UnQuarked Wine Room, 145 Central Park Square, Los Alamos, NM 87544 CONTACT: Jessica Privette 505 667-0375 CATEGORY: Bradbury INTERNAL: Calendar Login Science on Tap February Event Description Science On Tap happens every third Thursday of the month. It begins with an informal 15-minute talk followed by a lively group discussion. This week, Harshini Mukundan of Physical Chemistry and Applied Spectroscopy at Los Alamos

  10. Science On Tap

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science On Tap Science On Tap WHEN: Nov 19, 2015 5:30 PM - 7:00 PM WHERE: UnQuarked Wine Room 145 Central Park Square, Los Alamos, NM 87544 USA SPEAKER: Ray Newell, Quantum Encryption CONTACT: Linda Anderman (505) 665-9196 CATEGORY: Bradbury INTERNAL: Calendar Login Science On Tap Event Description Science On Tap happens every third Thursday of the month, featuring a new topic each week. It begins with an informal 15-minute talk and is followed by a lively group discussion. Quantum Cryptography:

  11. Science on Tap

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    January ┬╗ Science on Tap Science on Tap WHEN: Jan 15, 2015 5:30 PM - 7:00 PM WHERE: UnQuarked The Wine Room, 145 Central Park Square, Los Alamos CONTACT: Jessica Privette 505 667-0375 CATEGORY: Bradbury INTERNAL: Calendar Login Science on Tap January Event Description Sara Del Valle of Energy and Infrastructure Analysis (DSA-4) talks about her and her team's research into using Wikipedia to monitor and forecast diseases around the globe. Science on Tap is a project of the Los Alamos Creative

  12. Science on Tap - Plasmas

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science on Tap - Plasmas Science on Tap - Plasmas WHEN: Apr 21, 2016 5:30 PM - 7:00 PM WHERE: UnQuarked Wine Room 145 Central Park Square, Los Alamos, New Mexico 87544 USA CONTACT: Linda Anderman (505) 665-9196 CATEGORY: Bradbury INTERNAL: Calendar Login Science on tap Event Description Science On Tap happens every third Thursday of the month, featuring a new topic each week. It begins with an informal 15-minute talk and is followed by a lively group discussion. Observing the stuff of stars (and

  13. ScienceFest

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Show your passion for innovation with a creative talk July 22, 2014 Presentations sought for TechRev Day at Los Alamos ScienceFest LOS ALAMOS, N.M., July 22, 2014-Organizers of Los Alamos ScienceFest, a weeklong celebration of science, are seeking innovative presentations from passionate people with a love of innovation. "TechRev Day, a ScienceFest event, will showcase a series of 15-minute presentations from students, educators, scientists, engineers, bloggers, inventors and other creative

  14. Radiation Effects Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Facilities Atmospheric Radiation Measurement Climate Reasearch Facility Geomechanics and ... Twitter Google + Vimeo Newsletter Signup SlideShare Radiation Effects Sciences Home...

  15. Information Sciences and Technology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    file systems Bioinformatics Infectious disease surveillance Climate change and energy security Smart grids Learn more about our Information Science and Technology capabilities

  16. Science at NERSC

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NERSC HPC Achievement Awards Share Your Research User Submitted Research Citations NERSC Citations Home ┬╗ Science at NERSC Science at NERSC NERSC's core mission is to accelerate the pace of scientific discovery. NERSC and its nearly 6,000 users are are extremely active contributors to all fields of energy-related science in which computation and data analysis play a central role. NERSC is citied in about 1,500 refereed scientific publications per year. A complete list of science articles is at

  17. Top Science of 2013

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Roadrunner firsts pave way for greener, faster supercomputing Top Science of 2013 Our strong interdisciplinary teaming and unique research facilities allow us to develop solutions ...

  18. Fermilab | Science | Historic Results

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Navbar Toggle About Quick Info Science History Organization Photo and video gallery Diversity Education Safety Sustainability and environment Contact Newsroom Spotlight Press ...

  19. Fusion Energy Sciences Jobs

    Office of Science (SC) Website

    fesaboutjobs Below is a list of currently open federal employment opportunities in the Office of Science. Prospective applicants should follow the links to the formal position...

  20. Sandia Science & Technology Park

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Laboratories. More Info Liquid Common SS&TP welcomes Liquid Common Liquid Common is a digital marketing company now located in the Park. More Info Sandia Science & Technology...

  1. Geospatial Science Steering Committee

    Broader source: Energy.gov [DOE]

    The Geospatial Science Steering Committee (GSSC) functions in an advisory role to the DOE national laboratories, major facilities, and to headquarters and field office elements to actively promote...

  2. Experimental Physical Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    in Physics, Chair ASM International, Board of Trustees Association for Iron & Steel Technology, Board of Directors National Science Foundation, Condensed Matter Physics, Program...

  3. About NIF & Photon Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NIF users include scientists from the U.S. Department of Energy national laboratories, worldwide fusion energy and high energy density science research centers, academia, and other ...

  4. Information Science & Technology Institute

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ISTI Information Science & Technology Institute Providing connection to program management for capability needs, as well as IS&T integration and support for mission-critical...

  5. Science & Technology - 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    FAQs Visit Us Science Stockpile Stewardship National Security National Competitiveness Fusion and Ignition Experiments Fast Ignition Energy for the Future How to Make a Star How...

  6. Earth and Environmental Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Global Solutions Navigate Section Our Vision National User Facilities Research Areas In Focus Global Solutions Climate and Ecosystem Sciences Division The Climate and Ecosystem ...

  7. Basic Energy Sciences Update

    Broader source: Energy.gov (indexed) [DOE]

    Operations Office of Science Vacant Patricia Dehmer (A) Nuclear Physics Tim Hallman Advanced Scientific Computing Research Steve Binkley Nuclear Energy Pete Lyons Fossil Energy...

  8. Science and Suds

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    activities and dynamic speakers to engage kids, families and individuals interested in life-long learning in science, technology, engineering, art and math. For the full...

  9. Regional Science Bowl 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Doing Business Expand Doing Business Skip navigation links Community & Education Science Bowl 2015 High School Team Photos 2015 Middle School Team Photos Scholarships...

  10. Bradbury Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    subject, big fun with NanoDays at Bradbury Science Museum March 18, 2013 LOS ALAMOS, N. M., March 15, 2013-The tiny, strange world of nanoscale science is a big subject at the Bradbury Science Museum these days, as the organization celebrates NanoDays 2013. NanoDays is a national campaign, engaging people of all ages in learning about the emerging field of nanoscale science and engineering. The Bradbury marks NanoDays 2013 with interactive demonstrations and activities on the museum floor on

  11. High School Science Bowl

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    High School Science Bowl High School Science Bowl WHEN: Feb 07, 2015 8:00 AM - 4:00 PM WHERE: Highland High School 4700 Coal Ave SE, Albuquerque, USA CATEGORY: Community INTERNAL: Calendar Login Event Description The Science Bowl is a Jeopardy-like event for high school and middle school students who have a strong interest in mathematics and science. The competition is in the form of a round robin in the morning and double elimination after lunch. Teams consist of four students and one optional

  12. National Science Bowl Finals

    ScienceCinema (OSTI)

    None

    2010-09-01

    National Science Bowl finals and awards at the National Building Museum in Washington D.C. Monday 5/3/2010

  13. CASL - Science Council

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    but may assess due to the importance of multi-physics integration and structural mechanics Physics Integration (PHI) and Advanced Modeling Applications (AMA). The Science...

  14. Earth and Environmental Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    EES Earth and Environmental Sciences (EES) Sustainable energy, climate impacts, nuclear threat detection, and environmental management are primary focus areas of earth and...

  15. Applied Computer Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    7 Applied Computer Science Innovative co-design of applications, algorithms, and architectures in order to enable scientific simulations at extreme scale Leadership Group Leader ...

  16. Structural Genomics of Protein Phosphatases

    SciTech Connect (OSTI)

    Almo,S.; Bonanno, J.; Sauder, J.; Emtage, S.; Dilorenzo, T.; Malashkevich, V.; Wasserman, S.; Swaminathan, S.; Eswaramoorthy, S.; et al

    2007-01-01

    The New York SGX Research Center for Structural Genomics (NYSGXRC) of the NIGMS Protein Structure Initiative (PSI) has applied its high-throughput X-ray crystallographic structure determination platform to systematic studies of all human protein phosphatases and protein phosphatases from biomedically-relevant pathogens. To date, the NYSGXRC has determined structures of 21 distinct protein phosphatases: 14 from human, 2 from mouse, 2 from the pathogen Toxoplasma gondii, 1 from Trypanosoma brucei, the parasite responsible for African sleeping sickness, and 2 from the principal mosquito vector of malaria in Africa, Anopheles gambiae. These structures provide insights into both normal and pathophysiologic processes, including transcriptional regulation, regulation of major signaling pathways, neural development, and type 1 diabetes. In conjunction with the contributions of other international structural genomics consortia, these efforts promise to provide an unprecedented database and materials repository for structure-guided experimental and computational discovery of inhibitors for all classes of protein phosphatases.

  17. Energy, information science, and systems science

    SciTech Connect (OSTI)

    Wallace, Terry C; Mercer - Smith, Janet A

    2011-02-01

    This presentation will discuss global trends in population, energy consumption, temperature changes, carbon dioxide emissions, and energy security programs at Los Alamos National Laboratory. LANL's capabilities support vital national security missions and plans for the future. LANL science supports the energy security focus areas of impacts of Energy Demand Growth, Sustainable Nuclear Energy, and Concepts and Materials for Clean Energy. The innovation pipeline at LANL spans discovery research through technology maturation and deployment. The Lab's climate science capabilities address major issues. Examples of modeling and simulation for the Coupled Ocean and Sea Ice Model (COSIM) and interactions of turbine wind blades and turbulence will be given.

  18. Comparative Reannotation of 21 Aspergillus Genomes

    SciTech Connect (OSTI)

    Salamov, Asaf; Riley, Robert; Kuo, Alan; Grigoriev, Igor

    2013-03-08

    We used comparative gene modeling to reannotate 21 Aspergillus genomes. Initial automatic annotation of individual genomes may contain some errors of different nature, e.g. missing genes, incorrect exon-intron structures, 'chimeras', which fuse 2 or more real genes or alternatively splitting some real genes into 2 or more models. The main premise behind the comparative modeling approach is that for closely related genomes most orthologous families have the same conserved gene structure. The algorithm maps all gene models predicted in each individual Aspergillus genome to the other genomes and, for each locus, selects from potentially many competing models, the one which most closely resembles the orthologous genes from other genomes. This procedure is iterated until no further change in gene models is observed. For Aspergillus genomes we predicted in total 4503 new gene models ( ~;;2percent per genome), supported by comparative analysis, additionally correcting ~;;18percent of old gene models. This resulted in a total of 4065 more genes with annotated PFAM domains (~;;3percent increase per genome). Analysis of a few genomes with EST/transcriptomics data shows that the new annotation sets also have a higher number of EST-supported splice sites at exon-intron boundaries.

  19. Genome Improvement at JGI-HAGSC

    SciTech Connect (OSTI)

    Grimwood, Jane: Schmutz, Jeremy, J.: Myers, Richard, M.

    2012-03-03

    Since the completion of the sequencing of the human genome, the JGI has rapidly expanded its scientific goals in several DOE mission-relevant areas. At the JGI-HAGSC, we have kept pace with this rapid expansion of projects with our focus on assessing, assembling, improving and finishing eukaryotic whole genome shotgun (WGS) projects for which the shotgun sequence is generated at the Production Genomic Facility (JGI-PGF). We follow this by combining the draft WGS with genomic resources generated at JGI-HAGSC or in collaborator laboratories (including BAC end sequences, genetic maps and FLcDNA sequences) to produce an improved draft sequence. For eukaryotic genomes important to the DOE mission, we then add further information from directed experiments to produce reference genomic sequences that are publicly available for any scientific researcher. Also, we have continued our program for producing BAC-based finished sequence, both for adding information to JGI genome projects and for small BAC-based sequencing projects proposed through any of the JGI sequencing programs. We have now built our computational expertise in WGS assembly and analysis and have moved eukaryotic genome assembly from the JGI-PGF to JGI-HAGSC. We have concentrated our assembly development work on large plant genomes and complex fungal and algal genomes.

  20. Science DMZ Implemented at NERSC

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NERSC Science Engagement Move your data Programs & Workshops Science Requirements Reviews Case Studies OSCARS Case Studies Science DMZ Case Studies Science DMZ @ UF Science DMZ @ CU Science DMZ @ Penn & VTTI Science DMZ @ NOAA Science DMZ @ NERSC Science DMZ @ ALS Multi-facility Workflow Case Study Contact Us Technical Assistance: 1 800-33-ESnet (Inside US) 1 800-333-7638 (Inside US) 1 510-486-7600 (Globally) 1 510-486-7607 (Globally) Report Network Problems: trouble@es.net Provide Web

  1. Cassava Genomics: can genomic technology benefit smallholder farmers in Africa? (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Rounsley, Steve

    2014-03-20

    Steve Rounsley of the University of Arizona speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  2. The Olympics of science knowledge at PPPL's NJ Regional Science...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Olympics of science knowledge at PPPL's NJ Regional Science Bowl By Jeanne Jackson DeVoe March 3, 2014 Tweet Widget Google Plus One Share on Facebook The J Droids, a science ...

  3. SCIENCE ON SATURDAY- "The Large Hadron Collider: big science...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    January 5, 2013, 9:30am Science On Saturday MBG Auditorium SCIENCE ON SATURDAY- "The Large Hadron Collider: big science for big questions" Professor James Olsen Department of ...

  4. 2010 DOE National Science Bowl® Photos - Science Academy of...

    Office of Science (SC) Website

    Science Academy of South Texas National Science Bowl (NSB) NSB Home About National Science Bowl Contacts Regional Science Bowl Coordinators National Science Bowl FAQ's Alumni ...

  5. 2011 National Science Bowl Photos | U.S. DOE Office of Science...

    Office of Science (SC) Website

    1 National Science Bowl Photos National Science Bowl (NSB) NSB Home About National Science Bowl Contacts Regional Science Bowl Coordinators National Science Bowl FAQ's Alumni ...

  6. 2010 National Science Bowl Photos | U.S. DOE Office of Science...

    Office of Science (SC) Website

    0 National Science Bowl Photos National Science Bowl (NSB) NSB Home About National Science Bowl Contacts Regional Science Bowl Coordinators National Science Bowl FAQ's Alumni ...

  7. Past National Science Bowl Winners | U.S. DOE Office of Science...

    Office of Science (SC) Website

    Winners National Science Bowl (NSB) NSB Home About National Science Bowl Contacts Regional Science Bowl Coordinators National Science Bowl FAQ's Alumni Past National Science Bowl ...

  8. JGI Genomic Single-cell Assembly Workflow

    Energy Science and Technology Software Center (OSTI)

    2011-09-16

    JIGSAW is a software package disigned to quality control and assemble genomic DNA sequences from single-cell bacterial and archaeal genomes. Amplification of singel-cell genomes using multiple displacement amplification technology presents challenges that magnify the amount of contaminants in the sample and produce non uniform depth of sequence coverage. these factors pose problems whan assembling the genomic data using currently availible short read assembles. The software addresses these problems by removing contaminants and normalizing the sequencemore┬á┬╗ read coverage prior to assemble. A hybrid assembly approach using two different open source genome assembly tools is then applied to piece together the DNA fragments. Additional reporting of QC metrics for the input sample and the genome assembly is provided for further analysis.┬ź┬áless

  9. BioenergizeME Virtual Science Fair: Science & Technology Sustainable

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Transportation Fuels | Department of Energy Science & Technology Sustainable Transportation Fuels BioenergizeME Virtual Science Fair: Science & Technology Sustainable Transportation Fuels BioenergizeME Virtual Science Fair: Science & Technology Sustainable Transportation Fuels This infographic was created by students from Sun Valley High School in Aston, PA, as part of the U.S. Department of Energy-BioenergizeME Virtual Science

  10. Science Highlights | U.S. DOE Office of Science (SC)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Highlights Fusion Energy Sciences (FES) FES Home About Research Facilities Science Highlights Benefits of FES Funding Opportunities Fusion Energy Sciences Advisory Committee (FESAC) Community Resources Contact Information Fusion Energy Sciences U.S. Department of Energy SC-24/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-4941 F: (301) 903-8584 E: Email Us More Information ┬╗ Science Highlights Print Text Size: A A A Subscribe FeedbackShare Page Filter

  11. Webinar: Materials Genome Initative | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Materials Genome Initative Webinar: Materials Genome Initative Below is the text version of the webinar titled "Materials Genome Initiative," originally presented on December 2, 2014. In addition to this text version of the audio, you can access the presentation slides. Alli Aman: -today's webinar. I am going to go through a few housekeeping items before I turn it over to today's presenters. First of all, thank you so much for joining today. Today's webinar is being recorded, so a

  12. Genome Engineering with TAL Effector Nucleases

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genome Engineering with TAL Effector Nucleases Genome Engineering with TAL Effector Nucleases Print Tuesday, 24 April 2012 09:48 Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such as the correction of gene sequences in patients suffering from genetic diseases, the modification or insertion of genes in plants, and the generation of unique cell lines for treatment of diseases such as cancer. GE

  13. Stewardship Science Academic Alliances Awards | National Nuclear...

    National Nuclear Security Administration (NNSA)

    University Partnerships Academic Alliances Stewardship Science Academic Alliances Stewardship Science Academic Alliances Awards Stewardship Science Academic Alliances ...

  14. Human-mouse comparative genomics: successes and failures to reveal functional regions of the human genome

    SciTech Connect (OSTI)

    Pennacchio, Len A.; Baroukh, Nadine; Rubin, Edward M.

    2003-05-15

    Deciphering the genetic code embedded within the human genome remains a significant challenge despite the human genome consortium's recent success at defining its linear sequence (Lander et al. 2001; Venter et al. 2001). While useful strategies exist to identify a large percentage of protein encoding regions, efforts to accurately define functional sequences in the remaining {approx}97 percent of the genome lag. Our primary interest has been to utilize the evolutionary relationship and the universal nature of genomic sequence information in vertebrates to reveal functional elements in the human genome. This has been achieved through the combined use of vertebrate comparative genomics to pinpoint highly conserved sequences as candidates for biological activity and transgenic mouse studies to address the functionality of defined human DNA fragments. Accordingly, we describe strategies and insights into functional sequences in the human genome through the use of comparative genomics coupled wit h functional studies in the mouse.

  15. Keynote Presentation: Genome Beat (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Zimmer, Carl [New York Times

    2013-01-22

    Carl Zimmer, a reporter for the New York Times, speaks on "The Genome Beat," the opening keynote presentation at the JGI User 7th Annual Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, Calif

  16. Keynote Presentation: Genome Beat (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Zimmer, Carl [New York Times] [New York Times

    2012-03-20

    Carl Zimmer, a reporter for the New York Times, speaks on "The Genome Beat," the opening keynote presentation at the JGI User 7th Annual Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, Calif

  17. The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

    SciTech Connect (OSTI)

    Nordberg, Henrik; Cantor, Michael; Dushekyo, Serge; Hua, Susan; Poliakov, Alexander; Shabalov, Igor; Smirnova, Tatyana; Grigoriev, Igor V.; Dubchak, Inna

    2013-10-10

    The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a national user facility, serves the diverse scientific community by providing integrated high-throughput sequencing and computational analysis to enable system-based scientific approaches in support of DOE missions related to clean energy generation and environmental characterization. The JGI Genome Portal (http://genome.jgi.doe.gov) provides unified access to all JGI genomic databases and analytical tools. The JGI maintains extensive data management systems and specialized analytical capabilities to manage and interpret complex genomic data. A user can search, download and explore multiple data sets available for all DOE JGI sequencing projects including their status, assemblies and annotations of sequenced genomes. Here we describe major updates of the Genome Portal in the past 2 years with a specific emphasis on efficient handling of the rapidly growing amount of diverse genomic data accumulated in JGI.

  18. BioenergizeME Virtual Science Fair: Science & Technology Sustainable...

    Broader source: Energy.gov (indexed) [DOE]

    Science & Technology Sustainable Transportation Fuels This infographic was created by ... in Aston, PA, as part of the U.S. Department of Energy-BioenergizeME Virtual Science

  19. DOE Science Showcase - Neutron Science Research from DOE Databases...

    Office of Scientific and Technical Information (OSTI)

    Neutron Science Research from DOE Databases Additional neutron science research in DOE Databases Information Bridge Neutron scattering research was pioneered in 1946 by ORNL's ...

  20. ESnet's Science DMZ Breaks Down Barriers, Speeds up Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ESnet's Science DMZ Breaks Down Barriers, Speeds up Science News & Publications ESnet News Media & Press Publications and Presentations Galleries ESnet Awards and Honors Contact Us...

  1. Warp Speed and Lightsabers: Energy Science Fiction vs Energy Science |

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Department of Energy Warp Speed and Lightsabers: Energy Science Fiction vs Energy Science Warp Speed and Lightsabers: Energy Science Fiction vs Energy Science March 7, 2014 - 2:20pm Addthis Science fiction has envisioned many ways that mankind might be able to explore distant galaxies, like the spiral galaxy M106 pictured here, but what is science fiction and what could one day be science fact? | Photo Credit: NASA. Science fiction has envisioned many ways that mankind might be able to

  2. Metagenomics, metatranscriptomics and single cell genomics reveal...

    Office of Scientific and Technical Information (OSTI)

    and single cell genomics reveal functional response of active Oceanospirillales to Gulf oil spill Citation Details In-Document Search Title: Metagenomics, metatranscriptomics and...

  3. Diatom Genomics (2009 JGI User Meeting)

    ScienceCinema (OSTI)

    Ambrust, Ginger

    2011-04-25

    Ginger Armbrust from the University of Washington spoke about diatom genomics on March 26, 2009 at the DOE JGI User Meeting

  4. Diatom Genomics (2009 JGI User Meeting)

    SciTech Connect (OSTI)

    Ambrust, Ginger

    2009-03-26

    Ginger Armbrust from the University of Washington spoke about diatom genomics on March 26, 2009 at the DOE JGI User Meeting

  5. Comparative Genomics Analysis and Phenotypic Characterization...

    Office of Scientific and Technical Information (OSTI)

    Technical Report: Comparative Genomics Analysis and Phenotypic Characterization of ... (Myers and Nealson, 1988) and similar bacteria have also been isolated from other ...

  6. Astronomy Particle Physics Light Sources Genomics

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    1 - 2 Astronomy Particle Physics Light Sources Genomics Climate * Big Data Software - Broad ecosystem of capabilities and technologies - Research and evaluate - Customize and...

  7. Synthetic Genomics Inc | Open Energy Information

    Open Energy Info (EERE)

    search Name: Synthetic Genomics Inc. Place: La Jolla, California Sector: Hydro, Hydrogen, Renewable Energy Product: California-based company planning to create new types of...

  8. Neutron and Nuclear Science News

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    News Recent news and events related to neutron and nuclear science at LANSCE. Neutron and Nuclear Science News Links Neutron and Nuclear Science News Media Links Profiles Events at LANSCE

  9. Brookhaven Women in Science Lecture

    ScienceCinema (OSTI)

    Johanna Levelt Sengers

    2010-09-01

    Sponsored by Brookhaven Women in Science (BWIS), Johanna Levelt Sengers, Scientist Emeritus at the National Institute of Standards & Technology (NIST), presents a talk titled "The World's Science Academies Address the Under-Representation of Women in Science and Technology."

  10. Open Science Grid at NERSC

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Open Science Grid Open Science Grid at NERSC NERSC provides computing to Open Science Grid (OSG) users through a special allocation. OSG Users must submit an OSG new user request ...

  11. Effects of Sample Treatments on Genome Recovery via Single-Cell Genomics

    SciTech Connect (OSTI)

    Woyke, Tanja; Clingenpeel, Scott; Schwientek, Patrick; Hugenholtz, Philip

    2014-04-30

    Single-cell genomics is a powerful tool for accessing genetic information from uncultivated microorganisms. Methods of handling samples before single-cell genomic amplification may affect the quality of the genomes obtained. Using three bacterial strains we show that compared to cryopreservation, lower quality single-cell genomes are recovered when the sample is preserved in ethanol or if the sample undergoes fluorescence in situ hybridization, while sample preservation in paraformaldehyde renders it completely unsuitable for sequencing

  12. 11th Annual Energy Department Joint Genome Institute Genomics of Energy & Environment Meeting

    Broader source: Energy.gov [DOE]

    The 11th Annual DOE Joint Genome Institute Genomics of Energy & Environment Meeting will be held March 21ÔÇô25, 2016 in Walnut Creek, California. The meeting will gather together experts and researchers working in energy and environmental genomics and synthetic biology, and it will have a special focus on the work done at the DOE Joint Genome Institute. Bioenergy Technologies Office Technology Manager Daniel Fishman will be in attendance.

  13. 11th Annual DOE Joint Genome Institute Genomics of Energy & Environment Meeting

    Broader source: Energy.gov [DOE]

    The 11th Annual DOE Joint Genome Institute Genomics of Energy & Environment Meeting will be held March 21ÔÇô25, 2016 in Walnut Creek, California. The meeting will gather together experts and researchers working in energy and environmental genomics and synthetic biology, and it will have a special focus on the work done at the DOE Joint Genome Institute. Bioenergy Technologies Office Technology Manager Daniel Fishman will be in attendance.

  14. Computing and Computational Sciences Directorate - Divisions

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    CCSD Divisions Computational Sciences and Engineering Computer Sciences and Mathematics Information Technolgoy Services Joint Institute for Computational Sciences National Center for Computational Sciences

  15. Science on Tap - Earthquakes

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science on Tap - Earthquakes Science on Tap - Earthquakes WHEN: Jan 21, 2016 5:30 PM - Feb 12, 2015 7:00 PM WHERE: UnQuarked Wine Room 145 Central Park Square, Los Alamos, New Mexico 87544 USA SPEAKER: Paul Johnson - Los Alamos National Laboratory CONTACT: Linda Anderman (505) 665-9196 CATEGORY: Bradbury INTERNAL: Calendar Login Event Description Science on Tap happens every third Thursday of the month, featuring a new topic each time. It begins with an informal 15 minute talk and is followed by

  16. ScienceFest

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ScienceFest ScienceFest WHEN: Jul 13, 2016 8:00 PM - Jul 17, 2016 5:00 PM WHERE: Downtown Los Alamos CONTACT: Rose Evans (505) 661-4860 CATEGORY: Bradbury INTERNAL: Calendar Login Event Description Lots of fun and excitement for all ages The mission: The mission of Los Alamos ScienceFest is to celebrate the scientific heritage and excellence of our community by showcasing cultural actives for people of all ages. Goals: Festival producers and partners along with corporate sponsors hope to:

  17. COMPUTATIONAL SCIENCE CENTER

    SciTech Connect (OSTI)

    DAVENPORT, J.

    2005-11-01

    The Brookhaven Computational Science Center brings together researchers in biology, chemistry, physics, and medicine with applied mathematicians and computer scientists to exploit the remarkable opportunities for scientific discovery which have been enabled by modern computers. These opportunities are especially great in computational biology and nanoscience, but extend throughout science and technology and include, for example, nuclear and high energy physics, astrophysics, materials and chemical science, sustainable energy, environment, and homeland security. To achieve our goals we have established a close alliance with applied mathematicians and computer scientists at Stony Brook and Columbia Universities.

  18. Bradbury Science Museum celebrates

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    celebrates its 50th anniversary December 9, 2013 Public reception scheduled Dec. 11 LOS ALAMOS, N.M., Dec. 9, 2013-This year has been one of milestones for Los Alamos National Laboratory, including for its Bradbury Science Museum. To mark the museum's 50th anniversary, the museum will host a reception open to the public from 4 to 6 p.m. Wednesday, Dec. 11. "For 50 years, the Bradbury Science Museum's mission has been to foster enthusiasm and support for science and engineering, and a better

  19. Science on Tap - Robotics

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science on Tap - Robotics Science on Tap - Robotics WHEN: Sep 15, 2016 5:30 PM - 7:00 PM WHERE: Bradbury Science Museum 1350 Central Ave, Los Alamos, NM 87544, USA CONTACT: Linda Anderman (505) 665-9196 CATEGORY: Bradbury INTERNAL: Calendar Login Event Description Join us on the third Thursday of each month at 5:30 at the UnQuarked Wine Room in Los Alamos. The event is open to those of all ages. A short presentation is followed by lively discussion. Join in the fun! Through a robot's eyes...and

  20. Regional Science Bowl

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    January ┬╗ Regional Science Bowl Regional Science Bowl WHEN: Jan 23, 2016 8:00 AM - 5:00 PM WHERE: Highland High School 4700 Coal SE, Albuquerque, NM CONTACT: Janelle Vigil-Maestas (505) 665-4329 CATEGORY: Community INTERNAL: Calendar Login Event Description Five teams from Northern New Mexico area schools are among 16 participating in the middle school Regional Science Bowl competition. Northern area teams participating are from Los Alamos, Espa├▒ola, Cuba and Santa Fe. The winning team at this

  1. ARM - ARM Science Team Meetings

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    govScienceARM Science Team Meetings Science Team Meetings 2009 2008 2007 2006 2005 2004 2003 2002 2001 2000 1999 1998 1997 1996 1995 1994 1993 1992 ARM Science Team Meetings Poster sessions were key components of the ARM Science Team Meetings through the years. Former ARM Chief Scientist Tom Ackerman (center, dark pants) spent many hours participating in these sessions. Poster sessions were key components of the ARM Science Team Meetings through the years. Former ARM Chief Scientist Tom Ackerman

  2. Science Undergraduate Laboratory Internships (SULI)

    Broader source: Energy.gov [DOE]

    The Science Undergraduate Laboratory Internship (SULI) program encourages undergraduate students to pursue science, technology, engineering, and mathematics (STEM) careers by providing research...

  3. APS Science | Advanced Photon Source

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science APS Science features articles on Advanced Photon Source research and engineering highlights that are written for the interested public as well as the synchrotron x-ray,...

  4. 2014 Science of Signatures Program

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Email 2014 Science of Signatures Program Agenda 2014 Projects and Teams 2014 Science of Signatures Speakers and Presentations LDRD Penta Chart Template ER Proposal Template...

  5. 2015 Science of Signatures Program

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science of Signatures Program Agenda (PDF) 2015 Projects and Teams 2015 Science of Signatures Speakers and Presentations LDRD Penta Chart Template (PDF) ER Proposal Template (PDF)...

  6. Computer, Computational, and Statistical Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    CCS Computer, Computational, and Statistical Sciences Computational physics, computer science, applied mathematics, statistics and the integration of large data streams are central ...

  7. ORISE: Center for Science Education

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Education as a national resource for featuring proven approaches and programs that can help make science, technology, engineering and mathematics education more effective. ...

  8. Science and Technology Review September 2001

    SciTech Connect (OSTI)

    Quong, A.A.

    2001-09-01

    This issue contains the following articles: (1) ''Technology Transfer Takes a Team''. (2) ''Zeroing In on Genes'' With Gene Recovery Microdissection, sequencing an entire genome to find its genes will no longer be necessary. (3) ''Big Glass for a Big Laser'' Together, Livermore and two leading laser glass producers have developed a revolutionary new method for making big pieces of high-quality laser glass. (4) ''Lasershot Makes Its Mark'' The Lasershot Marking System creates permanent, high-resolution identification marks on safety-critical metal parts, without weakening the part. (5) ''Tracking the Global Spread of Advanced Technology'' The Center for Global Security Research takes on the challenge of analyzing and raising awareness of the potential national security threats posed by advances in science and technology.

  9. Science & Technology - 2014

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    august Science & Technology - 2014 August First Multi-bunch ... for the first time the generation of two nearly-identical ... emission, fuel motion, and mix levels in the hot-spot at ...

  10. It Starts with Science...

    Office of Energy Efficiency and Renewable Energy (EERE)

    Secretary Chu sits down with a journalism student at Carnegie Mellon's Education City campus in Qatar to discuss the value of science in education and what attracted him to the study of Physics.

  11. Western Nuclear Science Alliance

    SciTech Connect (OSTI)

    Steve Reese; George Miller; Stephen Frantz; Denis Beller; Denis Beller; Ed Morse; Melinda Krahenbuhl; Bob Flocchini; Jim Elliston

    2010-12-07

    The primary objective of the INIE program is to strengthen nuclear science and engineering programs at the member institutions and to address the long term goal of the University Reactor Infrastructure and Education Assistance Program.

  12. It Starts with Science...

    ScienceCinema (OSTI)

    Chu, Steven

    2013-05-29

    Secretary Chu sits down with a journalism student at Carnegie Mellon's Education City campus in Qatar to discuss the value of science in education and what attracted him to the study of Physics.

  13. Help | ScienceCinema

    Office of Scientific and Technical Information (OSTI)

    video files. Users can then easily access the precise point in the video where the word was spoken. There are two search options within ScienceCinema, the default "Audio...

  14. Fermilab Science Education Office

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Off or Not Supported in Your Browser. You can still access all of the content on the Education Server about Science Education, but turn on JavaScript to enable all this site's...

  15. ARM Science Meeting

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Meeting to be some bias in the data. While it is premature to draw conclusions on the basis of such a limited data set, several comments regarding this variability and bias ...

  16. ARM - AMF Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    2009-2010 Shouxian, China, 2008 Black Forest, Germany, 2007 Niamey, Niger, 2006 Point Reyes, California, 2005 AMF Science Locale: Anywhere in the World The purpose of an ARM...

  17. NP Science Network Requirements

    SciTech Connect (OSTI)

    Dart, Eli; Rotman, Lauren; Tierney, Brian

    2011-08-26

    The Energy Sciences Network (ESnet) is the primary provider of network connectivity for the U.S. Department of Energy (DOE) Office of Science (SC), the single largest supporter of basic research in the physical sciences in the United States. To support SC programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs it serves. This focus has helped ESnet to be a highly successful enabler of scientific discovery for over 20 years. In August 2011, ESnet and the Office of Nuclear Physics (NP), of the DOE SC, organized a workshop to characterize the networking requirements of the programs funded by NP. The requirements identified at the workshop are summarized in the Findings section, and are described in more detail in the body of the report.

  18. Science & Technology - 2016

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science & Technology - 2016 February NIF Optics Damage Repair is 2015 Top Technology Pick ... of what takes place when NIF's 192 laser beams enter the pencil eraser-sized gold ...

  19. Bradbury Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Astronomy days lectures begin July 8 at Bradbury Science Museum July 2, 2008 LOS ALAMOS, New Mexico, July 2, 2008-A series of six evening lectures that focus on astronomy and the...

  20. About Science Bowl

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Volunteers - Sign Up About Science Bowl Curriculum and Activities How to Build a Motor The Great Marble Drop How to Build a Turbine How to Build a Tower Classroom...

  1. Applied Science/Techniques

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Applied ScienceTechniques Print The ALS is an excellent incubator of new scientific techniques and instrumentation. Many of the technical advances that make the ALS a world-class...

  2. Science & Technology - 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science & Technology - 2015 March Developing Algorithms for Laser-based 3D Metal Printing ... In order to print a 3D part using the SLM process, the user must enter data into the ...

  3. Science & Technology - 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    example is the use of betatron x-ray radiation for research in the growing field of high energy density (HED) science on extremely short time and length scales (energy density is...

  4. Top Science of 2013

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ChemCam to see if Mars can support life, manned missions Top Science of 2013 Our strong interdisciplinary teaming and unique research facilities allow us to develop solutions to ...

  5. PHYSICAL SCIENCES, Physics Phase

    Office of Scientific and Technical Information (OSTI)

    SCIENCES, Physics Phase competition in trisected superconducting dome I. M. Vishik, 1, 2 M Hashimoto, 3 R.-H. He, 4 W. S. Lee, 1, 2 F. Schmitt, 1, 2 D. H. Lu, 3 R. G. Moore, 1...

  6. Functional Insights from Structural Genomics

    SciTech Connect (OSTI)

    Forouhar,F.; Kuzin, A.; Seetharaman, J.; Lee, I.; Zhou, W.; Abashidze, M.; Chen, Y.; Montelione, G.; Tong, L.; et al

    2007-01-01

    Structural genomics efforts have produced structural information, either directly or by modeling, for thousands of proteins over the past few years. While many of these proteins have known functions, a large percentage of them have not been characterized at the functional level. The structural information has provided valuable functional insights on some of these proteins, through careful structural analyses, serendipity, and structure-guided functional screening. Some of the success stories based on structures solved at the Northeast Structural Genomics Consortium (NESG) are reported here. These include a novel methyl salicylate esterase with important role in plant innate immunity, a novel RNA methyltransferase (H. influenzae yggJ (HI0303)), a novel spermidine/spermine N-acetyltransferase (B. subtilis PaiA), a novel methyltransferase or AdoMet binding protein (A. fulgidus AF{_}0241), an ATP:cob(I)alamin adenosyltransferase (B. subtilis YvqK), a novel carboxysome pore (E. coli EutN), a proline racemase homolog with a disrupted active site (B. melitensis BME11586), an FMN-dependent enzyme (S. pneumoniae SP{_}1951), and a 12-stranded {beta}-barrel with a novel fold (V. parahaemolyticus VPA1032).

  7. Science, Technology & Engineering

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Alan Bishop selected to lead LANL Science, Technology & Engineering directorate August 17, 2012 LOS ALAMOS, NEW MEXICO, August 17, 2012-Los Alamos National Laboratory Director Charles McMillan announced today that after a yearlong, nationwide search, Alan Bishop has been selected to be the Laboratory's next Principal Associate Director for Science, Technology, and Engineering (PADSTE). Bishop has been acting in that role - 2 - since Aug. 29, 2011.Over the course of a distinguished 30-year

  8. Materials Science | NREL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Materials Science Materials Science The unique internal construction of the gas-filled panels developed at the Lawrence Berkeley National Laboratory in California are as effective barriers to heat as its pink fibrous counterparts with less material in less space. <a href="http://energy.gov/articles/berkeley-labs-gas-filled-insulation-rivals-fiber-buildings-sector">Learn more about this cost-effective, energy-efficient insulation</a>. The unique internal construction of the

  9. Science & Technology - 2016

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    technology / 2016 / july Science & Technology - 2016 July 3D Printing Could Revolutionize Laser Development Three-month Turnaround for a New NIF Diagnostic Talk about being responsive to the needs of your customers. The NIF & Photon Science team developed and deployed a complex new diagnostic for NIF's radiation-effects source development program in just three months, from concept to execution. The diagnostic, dubbed Sentinel because of its resemblance to the squid-like

  10. Science | Argonne National Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Argonne Research Library supports the scientific and technical research of the employees of Argonne National Laboratory. While the library is not open to the public, we do make our catalog available for searching. Women in Science and Technology (WIST) aims to promote the success of women in scientific and technical positions at Argonne. Science The best and brightest minds come to Argonne to make scientific discoveries and technological innovations that improve the quality of life

  11. LASSO* - Science Requirements

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    LASSO* - Science Requirements *LES ARM Symbiotic Simulation and Observation (LASSO) workflow Andy Vogelmann 1 , William I Gustafson Jr 2 Zhijin Li 3,4 , Xiaoping Cheng 3 , Satoshi Endo 1 , Tami Toto 1 , and Heng Xiao 2 1 Brookhaven National Laboratory 2 Pacific Northwest National Laboratory 3 University of California Los Angeles 4 NASA Jet Propulsion Laboratory And TONS of people from the rest of ARM! LASSO Webpage: http://www.arm.gov/science/themes/lasso LASSO e-mail list sign up:

  12. ARM - Other Science Resources

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    SitesOther Science Resources Outreach Home Room News Publications Traditional Knowledge Kiosks Barrow, Alaska Tropical Western Pacific Site Tours Contacts Students Study Hall About ARM Global Warming FAQ Just for Fun Meet our Friends Cool Sites Teachers Teachers' Toolbox Lesson Plans Other Science Resources AIMS Education Foundation This website offers tools, activities, and information "designed by teachers for teachers." AIMS activities and curricula are extensively field tested and

  13. ARM - Science Project Ideas

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    TeachersScience Project Ideas Outreach Home Room News Publications Traditional Knowledge Kiosks Barrow, Alaska Tropical Western Pacific Site Tours Contacts Students Study Hall About ARM Global Warming FAQ Just for Fun Meet our Friends Cool Sites Teachers Teachers' Toolbox Lesson Plans Science Project Ideas Do changes in air pressure affect the weather? What is the relationship between air pressure and temperature? Monitor the weather forecast data from the web to find the answer. How does the

  14. ORISE: Science Education Publications

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Education Publications ORISE reports track U.S. scientific workforce trends The Oak Ridge Institute for Science and Education (ORISE) has published several reports that analyze labor trends, assess classroom technologies and examine other characteristics essential for enhancing America's global competitiveness. The following publications are available as PDF files. To view them, you will need the free Adobe Reader plug-in. Nuclear Engineering Nuclear Engineering Enrollments and Degrees

  15. Alliance for Science

    Broader source: Energy.gov [DOE]

    EMÔÇÖs Jud Lilly explains the nuclear fuel cycle to a group of students participating in the recent Sixth Annual Science Alliance at the Portsmouth Gaseous Diffusion Plant site in southern Ohio. A record 1,255 high school juniors attended and participated in interactive demonstrations designed to match their interests with potential careers related to science, technology, engineering and math. Students also learned about post-secondary educational requirements for those careers and regional universities that offer the necessary curricula.

  16. Imaging sciences workshop

    SciTech Connect (OSTI)

    Candy, J.V.

    1994-11-15

    This workshop on the Imaging Sciences sponsored by Lawrence Livermore National Laboratory contains short abstracts/articles submitted by speakers. The topic areas covered include the following: Astronomical Imaging; biomedical imaging; vision/image display; imaging hardware; imaging software; Acoustic/oceanic imaging; microwave/acoustic imaging; computed tomography; physical imaging; imaging algorithms. Selected papers are indexed separately for inclusion in the Energy Science and Technology Database.

  17. Brookhaven Science Associates, LLC

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    3, 2015 Dr. Doon L. Gibbs Laboratory Director Brookhaven Science Associates, LLC Brookhaven National Laboratory 40 Brookhaven Avenue Upton, New York 11973-5000 WCO-2015-02 Dear Dr. Gibbs: The Office of Enterprise Assessments' Office of Enforcement completed its investigation into the facts and circumstances associated with the meteorological tower electrical shock event that occurred at the Brookhaven National Laboratory on November 12, 2014. Brookhaven Science Associates, LLC (BSA) documented

  18. Accelerator Science | Jefferson Lab

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Accelerator Science Jefferson Lab is recognized as a world leader in accelerator science. This expertise comes from the planning, building, maintaining and operating of the Continuous Electron Beam Accelerator Facility (CEBAF) - the lab's particle accelerator. CEBAF is based on superconducting radiofrequency (SRF) technology. It produces a stream of charged electrons that scientists use to probe the nucleus of the atom. CEBAF was the first large-scale application of SRF technology in the world,

  19. Bradbury Science Museum participates

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    participates in Blue Star Museums program May 21, 2015 Free admission for active duty military, their family members LOS ALAMOS, N.M., May 21, 2015-Los Alamos National Laboratory's Bradbury Science Museum is again partnering with the National Endowment for the Arts, Blue Star Families Foundation and the Department of Defense in the Blue Star Museums program to host active duty military personnel and their families from Memorial Day, May 25, through Labor Day, Sept. 7. "The Bradbury Science

  20. Chemical Sciences Capabilities

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Modeling and Simulation in the Chemical Sciences Capabilities Modeling and simulation help us transform chemical data into meaningful information: * Develop remote-sensors that detect nuclear materials * Perform large- or small-scaled process modeling * Simulate new chemicals with tailored properties for diverse applications * Analyze chemical reaction rates for complex modeling needs * Examine chemical-sciences data and modeling for nuclear forensics * Analyze high explosive data and perform

  1. Science @WIPP: Underground Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    WIPP Underground Laboratory Double Beta Decay Dark Matter Biology Repository Science Renewable Energy Underground Laboratory The deep geologic repository at WIPP provides an ideal environment for experiments in many scientific disciplines, including particle astrophysics, waste repository science, mining technology, low radiation dose physics, fissile materials accountability and transparency, and deep geophysics. The designation of the Carlsbad Department of Energy office as a "field"

  2. Science Briefs - 2013

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Briefs - 2013 Read in detail about specific Los Alamos science achievements, and the honors our scientists are accruing. Image from National Oceanic and Atmospheric Administration's Environmental Visualization Laboratory depicts sea surface temperatures around Greenland from October 2010. Effect of ocean temperature on southwestern U.S. climate analyzed Researchers concluded that only part of the recent temperature rise in the Southwest could be attributed to greenhouse gases. -

  3. Science Briefs - 2014

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Briefs - 2014 Read in detail about specific Los Alamos science achievements, and the honors our scientists are accruing. Simulation of the cosmic web of the dark matter mass distribution. This region represents about 1/10,000 of the total simulation volume. First trillion particle cosmological simulation completed A team of astrophysicists and computer scientists has created high-resolution cyber images of our cosmos. - 1/8/15 Scanning electron micrograph (SEM) images of the

  4. Science on the Hill

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Hill Science on the Hill Recent Los Alamos research and achievements featured in the Santa Fe New Mexican News Releases Science Briefs Photos Picture of the Week Publications Social Media Videos Fact Sheets Hot-cast perovskite solar cells show promise for creating more efficient and affordable solar panels, LEDs, and lasers. Image courtesy Los Alamos National Laboratory. Something new under the sun Recent research breakthroughs at Los Alamos National Laboratory are helping to deliver on the

  5. Computational Earth Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    6 Computational Earth Science We develop and apply a range of high-performance computational methods and software tools to Earth science projects in support of environmental health, cleaner energy, and national security. Contact Us Group Leader Carl Gable Deputy Group Leader Gilles Bussod Email Profile pages header Search our Profile pages Hari Viswanathan inspects a microfluidic cell used to study the extraction of hydrocarbon fuels from a complex fracture network. EES-16's Subsurface Flow

  6. Science Research Connection

    Office of Scientific and Technical Information (OSTI)

    Science Research Connection Science Research Connection (SRC) offers to the DOE community research information integrated from various OSTI databases, including both unclassified/unlimited and statutorily controlled information. SRC requires either IP authentication and/or registration and access is free of charge. If you are a DOE Federal or DOE Contractor employee and wish to register for an SRC account, please accept the access agreement below and then select the register link. Access Notice

  7. Genome Structure Gallery from the Mycobacterium Tuberculosis Structual Genomics Consortium

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    The TB Structural Genomics Consortium works with the structures of proteins from M. tuberculosis, analyzing these structures in the context of functional information that currently exists and that the Consortium generates. The database of linked structural and functional information constructed from this project will form a lasting basis for understanding M. tuberculosis pathogenesis and for structure-based drug design. The Consortium's structural and functional information is publicly available. The Structures Gallery makes more than 650 total structures available by PDB identifier. Some of these are not consortium targets, but all are viewable in 3D color and can be manipulated in various ways by Jmol, an open-source Java viewer for chemical structures in 3D from http://www.jmol.org/

  8. Fungal biology: compiling genomes and exploiting them

    SciTech Connect (OSTI)

    Labbe, Jessy L; Uehling, Jessie K; Payen, Thibaut; Plett, Jonathan

    2014-01-01

    The last 10 years have seen the cost of sequencing complete genomes decrease at an incredible speed. This has led to an increase in the number of genomes sequenced in all the fungal tree of life as well as a wide variety of plant genomes. The increase in sequencing has permitted us to study the evolution of organisms on a genomic scale. A number of talks during the conference discussed the importance of transposable elements (TEs) that are present in almost all species of fungi. These TEs represent an especially large percentage of genomic space in fungi that interact with plants. Thierry Rouxel (INRA, Nancy, France) showed the link between speciation in the Leptosphaeria complex and the expansion of TE families. For example in the Leptosphaeria complex, one species associated with oilseed rape has experienced a recent and massive burst of movement by a few TE families. The alterations caused by these TEs took place in discrete regions of the genome leading to shuffling of the genomic landscape and the appearance of genes specific to the species, such as effectors useful for the interactions with a particular plant (Rouxel et al., 2011). Other presentations showed the importance of TEs in affecting genome organization. For example, in Amanita different species appear to have been invaded by different TE families (Veneault-Fourrey & Martin, 2011).

  9. Quality Scores for 32,000 Genomes

    SciTech Connect (OSTI)

    Land, Miriam L; Hyatt, Philip Douglas; Jun, Se Ran; Kora, Guruprasad H; Hauser, Loren John; Ussery, David W

    2014-01-01

    More than 80% of the microbial genomes in GenBank are of draft quality (12,553 draft vs. 2,679 finished, as of October, 2013). We examined the microbial DNA sequences available for complete, draft, and Sequence Read Archive genomes in GenBank as well as three other major public databases and assigned quality scores for more than 30,000 prokaryotic genome sequences. Scores were assigned using four categories: the completeness of the assembly, the presence of full-length rRNA genes, tRNA composition and the presence of a set of 120 conserved genes in prokaryotes. Most (~87.6%) of the genomes had quality scores of 0.8 or better and can be safely used for standard comparative genomics analysis, although only 6.1% of the genomes had a perfect quality score. We find that about 2.9% of the genomes had a score below 0.6 and probably have too low a quality to yield reliable analysis. This score corresponds to more than 1000 contigs. Comparison of the codon usage across 15,000 quality genomes found that anti-codons beginning with an A (codons ending with a U ) are almost non-existent, with the exception of one arginine codon (CGU).

  10. Uses of antimicrobial genes from microbial genome

    DOE Patents [OSTI]

    Sorek, Rotem; Rubin, Edward M.

    2013-08-20

    We describe a method for mining microbial genomes to discover antimicrobial genes and proteins having broad spectrum of activity. Also described are antimicrobial genes and their expression products from various microbial genomes that were found using this method. The products of such genes can be used as antimicrobial agents or as tools for molecular biology.

  11. The Crucibles Science Club Wins Colorado Science Bowl - News Releases |

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    NREL The Crucibles Science Club Wins Colorado Science Bowl Team Heads to Washington D.C. to Challenge Students from Across the USA for National Title January 31, 2009 Photo of the winning team at the Colorado Science Bowl. The Crucibles Science Club (team one) was the winner of this year's Colorado Science Bowl and heads to Washington D.C. in April to compete for the national title. Students from The Crucibles Science Club in Denver won the Colorado High School Science Bowl today. In the

  12. Microbial ecology and genomics: A crossroads of opportunity

    SciTech Connect (OSTI)

    Stahl, David A.; Tiedje, James M.

    2002-08-30

    Microbes have dominated life on Earth for most of its 4.5 billionyear history. They are the foundation of the biosphere, controlling the biogeochemical cycles and affecting geology, hydrology, and local and global climates. All life is completely dependent upon them. Humans cannot survive without the rich diversity of microbes, but most microbial species can survive without humans. Extraordinary advances in molecular technology have fostered an explosion of information in microbial biology. It is now known that microbial species in culture poorly represent their natural diversityÔÇöwhich dwarfs conventions established for the visible world. This was revealed over the last decade using newer molecular tools to explore environmental diversity and has sparked an explosive growth in microbial ecology and technologies that may profit from the bounty of natural biochemical diversity. Several colloquia and meetings have helped formulate policy recommendations to enable sustained research programs in these areas. One such colloquium organized by the American Academy of Microbiology (ÔÇťThe Microbial World: Foundation of the Biosphere,ÔÇŁ 1997) made two key recommendations: (1) develop a more complete inventory of living organisms and the interagency cooperation needed to accomplish this goal, and (2) develop strategies to harvest this remarkable biological diversity for the benefit of science, technology, and society. Complete genome sequence information was identified as an essential part of strategy development, and the recommendation was made to sequence the genome of at least one species of each of the major divisions of microbial life.

  13. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

    SciTech Connect (OSTI)

    Hu, Tina T.; Pattyn, Pedro; Bakker, Erica G.; Cao, Jun; Cheng, Jan-Fang; Clark, Richard M.; Fahlgren, Noah; Fawcett, Jeffrey A.; Grimwood, Jane; Gundlach, Heidrun; Haberer, Georg; Hollister, Jesse D.; Ossowski, Stephan; Ottilar, Robert P.; Salamov, Asaf A.; Schneeberger, Korbinian; Spannagl, Manuel; Wang, Xi; Yang, Liang; Nasrallah, Mikhail E.; Bergelson, Joy; Carrington, James C.; Gaut, Brandon S.; Schmutz, Jeremy; Mayer, Klaus F. X.; Van de Peer, Yves; Grigoriev, Igor V.; Nordborg, Magnus; Weigel, Detlef; Guo, Ya-Long

    2011-04-29

    In our manuscript, we present a high-quality genome sequence of the Arabidopsis thaliana relative, Arabidopsis lyrata, produced by dideoxy sequencing. We have performed the usual types of genome analysis (gene annotation, dN/dS studies etc. etc.), but this is relegated to the Supporting Information. Instead, we focus on what was a major motivation for sequencing this genome, namely to understand how A. thaliana lost half its genome in a few million years and lived to tell the tale. The rather surprising conclusion is that there is not a single genomic feature that accounts for the reduced genome, but that every aspect centromeres, intergenic regions, transposable elements, gene family number is affected through hundreds of thousands of cuts. This strongly suggests that overall genome size in itself is what has been under selection, a suggestion that is strongly supported by our demonstration (using population genetics data from A. thaliana) that new deletions seem to be driven to fixation.

  14. Genomic definition of species. Revision 2

    SciTech Connect (OSTI)

    Crkvenjakov, R.; Drmanac, R.

    1993-03-01

    A genome is the sum total of the DNA sequences in the cells of an individual organism. The common usage that species possess genomes comes naturally to biochemists, who have shown that all protein and nucleic acid molecules are at the same time species- and individual-specific, with minor individual variations being superimposed on a consensus sequence that is constant for a species. By extension, this property is attributed to the common features of DNA in the chromosomes of members of a given species and is called species genome. Our proposal for the definition of a biological species is as follows: A species comprises a group of actual and potential biological organisms built according to a unique genome program that is recorded, and at least in part expressed, in the structures of their genomic nucleic acid molecule(s), having intragroup sequence differences which can be fully interconverted in the process of organismal reproduction.

  15. Space Coast Science Education Alliance Science Bowl for Middle School

    Office of Science (SC) Website

    Students | U.S. DOE Office of Science (SC) Space Coast Science Education Alliance Science Bowl for Middle School Students National Science Bowl® (NSB) NSB Home About Regional Competitions Rules, Forms, and Resources High School Regionals Middle School Regionals National Finals Volunteers Key Dates Frequently Asked Questions News Media Contact Us WDTS Home Contact Information National Science Bowl® U.S. Department of Energy SC-27/ Forrestal Building 1000 Independence Ave., SW Washington, DC

  16. Science Headlines | U.S. DOE Office of Science (SC)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Headlines News News Home Featured Articles Science Headlines 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 Science Highlights Presentations & Testimony News Archives Communications and Public Affairs Contact Information Office of Science U.S. Department of Energy 1000 Independence Ave., SW Washington, DC 20585 P: (202) 586-5430 Science Headlines Print Text Size: A A A Subscribe FeedbackShare Page 09.02.16User Facility SLAC and Stanford Team Finds a Tough New Catalyst

  17. Catalysis Science | U.S. DOE Office of Science (SC)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Catalysis Science Chemical Sciences, Geosciences, & Biosciences (CSGB) Division CSGB Home About Research Areas Energy Frontier Research Centers (EFRCs) DOE Energy Innovation Hubs Reports and Activities Science Highlights Principal Investigators' Meetings BES Home Research Areas Catalysis Science Print Text Size: A A A FeedbackShare Page Notice: NOVEMBER 16, 2015 is the Catalysis Science target date for submission of proposals to be considered for funding within fiscal year 2016. Proposals

  18. Science Highlights | U.S. DOE Office of Science (SC)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Highlights Basic Energy Sciences (BES) BES Home About Research Facilities Science Highlights Benefits of BES Funding Opportunities Basic Energy Sciences Advisory Committee (BESAC) Community Resources Contact Information Basic Energy Sciences U.S. Department of Energy SC-22/Germantown Building 1000 Independence Ave., SW Washington, DC 20585 P: (301) 903-3081 F: (301) 903-6594 E: Email Us More Information ┬╗ Science Highlights Print Text Size: A A A Subscribe FeedbackShare Page Filter within BES

  19. Extreme Science (LBNL Science at the Theater)

    SciTech Connect (OSTI)

    Ajo-Franklin, Caroline; Klein, Spencer; Minor, Andrew; Torok, Tamas

    2012-02-27

    On Feb. 27, 2012 at the Berkeley Repertory Theatre, four Berkeley Lab scientists presented talks related to extreme science - and what it means to you. Topics include: Neutrino hunting in Antarctica. Learn why Spencer Klein goes to the ends of the Earth to search for these ghostly particles. From Chernobyl to Central Asia, Tamas Torok travels the globe to study microbial diversity in extreme environments. Andrew Minor uses the world's most advanced electron microscopes to explore materials at ultrahigh stresses and in harsh environments. And microbes that talk to computers? Caroline Ajo-Franklin is pioneering cellular-electrical connections that could help transform sunlight into fuel.

  20. Next Generation Sequencing at the University of Chicago Genomics...

    Office of Scientific and Technical Information (OSTI)

    University of Chicago Genomics Core Citation Details In-Document Search Title: Next Generation Sequencing at the University of Chicago Genomics Core You are accessing a ...

  1. DOE JGI Whole Genome Shotgun Sequencing, part 1

    ScienceCinema (OSTI)

    Miranda Harmon-Smith

    2010-09-01

    A Howard Hughes Medical Institute (HHMI) video production describing the Whole Genome Shotgun Sequencing process at the US Department of Energy's Joint Genome Institute (JGI).

  2. Using Genomics to Dissect Seed Development (JGI Seventh Annual...

    Office of Scientific and Technical Information (OSTI)

    Seed Development (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment Meeting) Citation Details In-Document Search Title: Using Genomics to Dissect Seed...

  3. Integrated Genome-Based Studies of Shewanella Ecophysiology ...

    Office of Scientific and Technical Information (OSTI)

    Integrated Genome-Based Studies of Shewanella Ecophysiology Citation Details In-Document Search Title: Integrated Genome-Based Studies of Shewanella Ecophysiology As a part of the ...

  4. Electrolyte Genome Could Be Battery Game-Changer

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Electrolyte Genome Could Be Battery Game-Changer Electrolyte Genome Could Be Battery Game-Changer The Materials Project screens molecules to accelerate electrolyte discovery April ...

  5. DOE JGI Whole Genome Shotgun Sequencing, part 3

    ScienceCinema (OSTI)

    Miranda Harmon-Smith

    2010-09-01

    A Howard Hughes Medical Institute (HHMI) video production describing the Whole Genome Shotgun Sequencing process at the US Department of Energy's Joint Genome Institute (JGI).

  6. Using Genomics to Dissect Seed Development (JGI Seventh Annual...

    Office of Scientific and Technical Information (OSTI)

    Using Genomics to Dissect Seed Development (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment Meeting) Citation Details In-Document Search Title: Using...

  7. Research Update: The materials genome initiative: Data sharing...

    Office of Scientific and Technical Information (OSTI)

    materials genome initiative: Data sharing and the impact of collaborative ab initio databases Citation Details In-Document Search Title: Research Update: The materials genome ...

  8. Achievements of structural genomics (Journal Article) | SciTech...

    Office of Scientific and Technical Information (OSTI)

    Journal Article: Achievements of structural genomics Citation Details In-Document Search Title: Achievements of structural genomics You are accessing a document from the...

  9. OSTIblog Articles in the Human Genome Project Topic | OSTI, US...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Related Topics: Charles DeLisi, DNA, DOE Research & Development (R&D) Accomplishments, genomics, Human Genome Project, Santa Fe Workshop, sequencing Read more... DOE Research ...

  10. DOE JGI Whole Genome Shotgun Sequencing, part 2

    ScienceCinema (OSTI)

    Miranda Harmon-Smith

    2010-09-01

    A Howard Hughes Medical Institute (HHMI) video production describing the Whole Genome Shotgun Sequencing process at the US Department of Energy's Joint Genome Institute (JGI).

  11. Achievements of structural genomics (Technical Report) | SciTech...

    Office of Scientific and Technical Information (OSTI)

    Technical Report: Achievements of structural genomics Citation Details In-Document Search Title: Achievements of structural genomics Authors: Terwilliger, Thomas C. 1 + Show ...

  12. Fueling Future with Algal Genomics (Conference) | SciTech Connect

    Office of Scientific and Technical Information (OSTI)

    carbon cycle, and are prominent candidates for biofuel production. The US Department of Energy Joint Genome Institute (JGI) is leading the world in algal genome sequencing...

  13. Localized Plasticity in the Streamlined Genomes of Vinyl Chloride...

    Office of Scientific and Technical Information (OSTI)

    Journal Article: Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides Citation ... Here we report the first, to our knowledge, complete genome ...

  14. Uses of antimicrobial genes from microbial genome (Patent) |...

    Office of Scientific and Technical Information (OSTI)

    Patent: Uses of antimicrobial genes from microbial genome Citation Details In-Document Search Title: Uses of antimicrobial genes from microbial genome We describe a method for ...

  15. NIF & Photon Science Management

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    management NIF & Photon Science Management The management team for the NIF & Photon Science Principal Directorate supports the directorate's key mission areas: Stockpile Stewardship, national security applications, NIF Discovery Science, laser-based directed energy and related laser and optical technologies, and advanced photon technologies. Directorate Programs Jeff Wisoff Principal Associate Director NIF & Photon Science Jeff Atherton Principal Deputy Principal Associate Director

  16. COMPUTATIONAL SCIENCE CENTER

    SciTech Connect (OSTI)

    DAVENPORT, J.

    2006-11-01

    Computational Science is an integral component of Brookhaven's multi science mission, and is a reflection of the increased role of computation across all of science. Brookhaven currently has major efforts in data storage and analysis for the Relativistic Heavy Ion Collider (RHIC) and the ATLAS detector at CERN, and in quantum chromodynamics. The Laboratory is host for the QCDOC machines (quantum chromodynamics on a chip), 10 teraflop/s computers which boast 12,288 processors each. There are two here, one for the Riken/BNL Research Center and the other supported by DOE for the US Lattice Gauge Community and other scientific users. A 100 teraflop/s supercomputer will be installed at Brookhaven in the coming year, managed jointly by Brookhaven and Stony Brook, and funded by a grant from New York State. This machine will be used for computational science across Brookhaven's entire research program, and also by researchers at Stony Brook and across New York State. With Stony Brook, Brookhaven has formed the New York Center for Computational Science (NYCCS) as a focal point for interdisciplinary computational science, which is closely linked to Brookhaven's Computational Science Center (CSC). The CSC has established a strong program in computational science, with an emphasis on nanoscale electronic structure and molecular dynamics, accelerator design, computational fluid dynamics, medical imaging, parallel computing and numerical algorithms. We have been an active participant in DOES SciDAC program (Scientific Discovery through Advanced Computing). We are also planning a major expansion in computational biology in keeping with Laboratory initiatives. Additional laboratory initiatives with a dependence on a high level of computation include the development of hydrodynamics models for the interpretation of RHIC data, computational models for the atmospheric transport of aerosols, and models for combustion and for energy utilization. The CSC was formed to bring together

  17. NIF & Photon Science News

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    nifps_news NIF & Photon Science News ├Ś Subscribe to our News Alerts * Your Email Address: * Preferred Format: HTML Text Subscribe August 24, 2016 Tweet Spotlight on: Discovery Science A Big Week for NIF Discovery Science During the week of July 31 to Aug. 4, five groups of NIF users worked with LLNL researchers to carry out a successful NIF Discovery Science shot week. The teams conducted 13 experiments in five separate basic high energy density (HED) science experimental campaigns in five

  18. Materials Science / Data Technology Nexus

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Materials Science / Data Technology Nexus Materials Science / Data Technology Nexus: IMS mini-symposium This one day mini-symposium is aligned with the CINT 2016 User Meeting, September 19 - 20 thumbnail of Contact Institute Director Dr. Alexander V. Balatsky Institute for Materials Science (505) 665-0077 Email Deputy Director Dr. Jennifer S. Martinez Institute for Materials Science (505) 665-0045 Email Deputy Director Dr. Nathan A. Mara Institute for Materials Science (505) 667 8665 Email

  19. National Science Bowl 2013 | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Science Bowl 2013 National Science Bowl 2013 Addthis National Science Bowl 2013 1 of 16 National Science Bowl 2013 The 2013 National Science Bowl started off at the 4H Center,...

  20. Genome Sequence of the Palaeopolyploid soybean

    SciTech Connect (OSTI)

    Schmutz, Jeremy; Cannon, Steven B.; Schlueter, Jessica; Ma, Jianxin; Mitros, Therese; Nelson, William; Hyten, David L.; Song, Qijian; Thelen, Jay J.; Cheng, Jianlin; Xu, Dong; Hellsten, Uffe; May, Gregory D.; Yu, Yeisoo; Sakura, Tetsuya; Umezawa, Taishi; Bhattacharyya, Madan K.; Sandhu, Devinder; Valliyodan, Babu; Lindquist, Erika; Peto, Myron; Grant, David; Shu, Shengqiang; Goodstein, David; Barry, Kerrie; Futrell-Griggs, Montona; Abernathy, Brian; Du, Jianchang; Tian, Zhixi; Zhu, Liucun; Gill, Navdeep; Joshi, Trupti; Libault, Marc; Sethuraman, Anand; Zhang, Xue-Cheng; Shinozaki, Kazuo; Nguyen, Henry T.; Wing, Rod A.; Cregan, Perry; Specht, James; Grimwood, Jane; Rokhsar, Dan; Stacey, Gary; Shoemaker, Randy C.; Jackson, Scott A.

    2009-08-03

    Soybean (Glycine max) is one of the most important crop plants for seed protein and oil content, and for its capacity to fix atmospheric nitrogen through symbioses with soil-borne microorganisms. We sequenced the 1.1-gigabase genome by a whole-genome shotgun approach and integrated it with physical and high-density genetic maps to create a chromosome-scale draft sequence assembly. We predict 46,430 protein-coding genes, 70percent more than Arabidopsis and similar to the poplar genome which, like soybean, is an ancient polyploid (palaeopolyploid). About 78percent of the predicted genes occur in chromosome ends, which comprise less than one-half of the genome but account for nearly all of the genetic recombination. Genome duplications occurred at approximately 59 and 13 million years ago, resulting in a highly duplicated genome with nearly 75percent of the genes present in multiple copies. The two duplication events were followed by gene diversification and loss, and numerous chromosome rearrangements. An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.

  1. Genome Sequence Databases (Overview): Sequencing and Assembly

    SciTech Connect (OSTI)

    Lapidus, Alla L.

    2009-01-01

    From the date its role in heredity was discovered, DNA has been generating interest among scientists from different fields of knowledge: physicists have studied the three dimensional structure of the DNA molecule, biologists tried to decode the secrets of life hidden within these long molecules, and technologists invent and improve methods of DNA analysis. The analysis of the nucleotide sequence of DNA occupies a special place among the methods developed. Thanks to the variety of sequencing technologies available, the process of decoding the sequence of genomic DNA (or whole genome sequencing) has become robust and inexpensive. Meanwhile the assembly of whole genome sequences remains a challenging task. In addition to the need to assemble millions of DNA fragments of different length (from 35 bp (Solexa) to 800 bp (Sanger)), great interest in analysis of microbial communities (metagenomes) of different complexities raises new problems and pushes some new requirements for sequence assembly tools to the forefront. The genome assembly process can be divided into two steps: draft assembly and assembly improvement (finishing). Despite the fact that automatically performed assembly (or draft assembly) is capable of covering up to 98% of the genome, in most cases, it still contains incorrectly assembled reads. The error rate of the consensus sequence produced at this stage is about 1/2000 bp. A finished genome represents the genome assembly of much higher accuracy (with no gaps or incorrectly assembled areas) and quality ({approx}1 error/10,000 bp), validated through a number of computer and laboratory experiments.

  2. Water, law, science

    SciTech Connect (OSTI)

    Narasimhan, T.N.

    2007-10-17

    In a world with water resources severely impacted bytechnology, science must actively contribute to water law. To this end,this paper is an earth scientist s attempt to comprehend essentialelements of water law, and to examine their connections to science.Science and law share a common logical framework of starting with apriori prescribed tenets, and drawing consistent inferences. In science,observationally established physical laws constitute the tenets, while inlaw, they stem from social values. The foundations of modern water law inEurope and the New World were formulated nearly two thousand years ago byRoman jurists who were inspired by Greek philosophy of reason.Recognizing that vital natural elements such as water, air, and the seawere governed by immutable natural laws, they reasoned that theseelements belonged to all humans, and therefore cannot be owned as privateproperty. Legally, such public property was to be governed by jusgentium, the law of all people or the law of all nations. In contrast,jus civile or civil law governed private property. Remarkably, jusgentium continues to be relevant in our contemporary society in whichscience plays a pivotal role in exploiting vital resources common to all.This paper examines the historical roots of modern water law, followstheir evolution through the centuries, and examines how the spirit ofscience inherent in jus gentium is profoundly influencing evolving waterand environmental laws in Europe, the United States and elsewhere. In atechnological world, scientific knowledge has to lie at the core of waterlaw. Yet, science cannot formulate law. It is hoped that a philosophicalunderstanding of the relationships between science and law willcontribute to their constructively coming together in the service ofsociety.

  3. Sandia National Labs: Physical, Chemical and Nano Sciences Center (PCNSC):

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Departments Sciences Semiconductor & Optical Sciences Energy Sciences Small Science Cluster Business Office News Partnering Research Departments Radiation, Nano Materials, & Interface Sciences Radiation and Solid Interactions Nanomaterials Sciences Surface and Interface Sciences Semiconductor & Optical Sciences Semiconductor Material and Device Sciences Advanced Materials Sciences Lasers, Optics, and Remote Sensing Energy Sciences CINT User Program CINT Science Small Science

  4. Quality scores for 32,000 genomes

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Land, Miriam L.; Hyatt, Doug; Jun, Se-Ran; Kora, Guruprasad H.; Hauser, Loren J.; Lukjancenko, Oksana; Ussery, David W.

    2014-12-08

    More than 80% of the microbial genomes in GenBank are of ÔÇśdraftÔÇÖ quality (12,553 draft vs. 2,679 finished, as of October, 2013). In this study, we have examined all the microbial DNA sequences available for complete, draft, and Sequence Read Archive genomes in GenBank as well as three other major public databases, and assigned quality scores for more than 30,000 prokaryotic genome sequences. Scores were assigned using four categories: the completeness of the assembly, the presence of full-length rRNA genes, tRNA composition and the presence of a set of 102 conserved genes in prokaryotes. Most (~88%) of the genomes hadmore┬á┬╗ quality scores of 0.8 or better and can be safely used for standard comparative genomics analysis. We compared genomes across factors that may influence the score. We found that although sequencing depth coverage of over 100x did not ensure a better score, sequencing read length was a better indicator of sequencing quality. With few exceptions, most of the 30,000 genomes have nearly all the 102 essential genes. The score can be used to set thresholds for screening data when analyzing ÔÇťall published genomesÔÇŁ and reference data is either not available or not applicable. The scores highlighted organisms for which commonly used tools do not perform well. This information can be used to improve tools and to serve a broad group of users as more diverse organisms are sequenced. Finally and unexpectedly, the comparison of predicted tRNAs across 15,000 high quality genomes showed that anticodons beginning with an ÔÇśAÔÇÖ (codons ending with a ÔÇśUÔÇÖ) are almost non-existent, with the exception of one arginine codon (CGU); this has been noted previously in the literature for a few genomes, but not with the depth found here.┬ź┬áless

  5. Science on Tap - Isotopes

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science on Tap - Isotopes Science on Tap - Isotopes WHEN: Jun 16, 2016 5:30 PM - 7:00 PM WHERE: UnQuarked Wine Room 145 Central Park Square, Los Alamos, New Mexico 87544 USA CONTACT: Linda Anderman (505) 665-9196 CATEGORY: Bradbury INTERNAL: Calendar Login Event Description Short presentation followed by lively interaction on the topic at hand. While isotopes are chemical elements (think periodic table), their varying numbers of neutrons mean they can be used in lots of different way. Join us

  6. Science on Tap - Matter

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science on Tap - Matter Science on Tap - Matter WHEN: Feb 18, 2016 5:30 PM - 7:00 PM WHERE: UnQuarked Wine Room 145 Central Park Square, Los Alamos, New Mexico 87544 USA SPEAKER: Jack Shlachter CONTACT: Linda Anderman (505) 665-9196 CATEGORY: Bradbury INTERNAL: Calendar Login Event Description Mark your calendars for this event held every third Thursday from 5:30 to 7 p.m. A short presentation is followed by a lively discussion on a different subject each month. What's the Matter with Matter?

  7. Science on Tap - Robotics

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science on Tap - Robotics At the Bradbury Latest Issue:September 2016 all issues All Issues ┬╗ submit Science on Tap - Robotics September 15 at 5:30 p.m. at UnQuarked in Los Alamos These events are open to everyone regardless of age! Through a robot's eyes...and arms Imagine it's a dark night and a delivery truck wants to go through the Lab's access portal in our main technical area. The driver's obvious nervousness raises a red flag for the guard on duty. She asks the driver to pull off to the

  8. Science and Society Colloquium

    ScienceCinema (OSTI)

    None

    2011-04-25

    Mr. Randi will give an update of his lecture to the American Physical Society on the occasion of his award of the 1989 Forum Prize. The citation said: "for his unique defense of Science and the scientific method in many disciplines, including physics, against pseudoscience, frauds and charlatans. His use of scientific techniques has contributed to refuting suspicious and fraudulent claims of paranormal results. He has contributed significantly to public understanding of important issues where science and society interact". He is a professional magician and author of many books. He worked with John Maddox, the Editor of Nature to investigate the claims of "water with memory".

  9. Science@WIPP

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    At the dawn of discovery ... Science@WIPP The deep geologic repository at WIPP is more than a place to dispose of transuranic (TRU) waste ┬ľ it┬ĺs also a science laboratory. Following the designation of the Department of Energy┬ĺs Carlsbad office as a field office in 2000, numerous universities and research institutions across the nation sought to take advantage of WIPP┬ĺs strong safety culture, open door policy, and extremely low levels of natural background radiation in the underground. It┬ĺs

  10. Materials science and engineering

    SciTech Connect (OSTI)

    Holden, T.M.

    1995-10-01

    The science-based stockpile stewardship program emphasizes a better understanding of how complex components function through advanced computer calculations. Many of the problem areas are in the behavior of materials making up the equipment. The Los Alamos Neutron Science Center (LANSCE) can contribute to solving these problems by providing diagnostic tools to examine parts noninvasively and by providing the experimental tools to understand material behavior in terms of both the atomic structure and the microstructure. Advanced computer codes need experimental information on material behavior in response to stress, temperature, and pressure as input, and they need benchmarking experiments to test the model predictions for the finished part.

  11. GNU Science Library (GSL)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    GNU Science Library (GSL) GNU Science Library (GSL) Description GSL, a numerical library for C and C++ programmers, is available on Hopper, Edison, and Carver, and PDSF. How to Access GSL You must use the module utility to access the library on all machines at NERSC. To load: module load gsl To see what environment variables are defined by the library: module show gsl Using GSL on Cori and Edison On Cori or Edison if you want to use the gcc compiler and GSL you must swap the modulefiles for the

  12. JLF Science Publications

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    science publications JLF Science Publications 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2003-06 Title Author Source High-Intensity laser-accelerated ion beam produced from cryogenic micro-jet target M. Gauthier et al. Rev. Sci. Instrum. 87, 11D827 High resolution spectrometer for extended x-ray absorption fine structure measurements in the 6 keV to 15 keV range J. F. Seely et al. Rev. Sci. Instrum. 87, 11E305 High Power Dynamic Polarization Control Using Plasma Photonics D. Turnbull et

  13. Bradbury Science Museum

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Former Laboratory scientist discusses his perspective on the Cold War in 70th anniversary talk November 7, 2013 Next-to-last presentation in yearlong series at Bradbury Science Museum LOS ALAMOS, N.M., Nov. 7, 2013-John C. Hopkins, former associate director for Los Alamos National Laboratory's nuclear weapons program, will give his perspective on the Laboratory during the Cold War years in the next 70th anniversary lecture at 5:30 p.m. Nov. 13 at the Bradbury Science Museum. "I believe that

  14. Science Briefs - 2015

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Briefs - 2015 Read in detail about specific Los Alamos science achievements, and the honors our scientists are accruing. January┬╗ February┬╗ March┬╗ April┬╗ May┬╗ June┬╗ July┬╗ August┬╗ September┬╗ October┬╗ November┬╗ December┬╗ Artist's depiction of the late Pleistocene landscape with some of the megaherbivores that became extinct. Impact of mammalian megaherbivores on global methane examined Examining the past consequences of large herbivore loss yields insights into contemporary

  15. Science Briefs - 2016

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Briefs - 2016 Read in detail about specific Los Alamos science achievements, and the honors our scientists are accruing. August┬╗ July┬╗ June┬╗ May┬╗ April┬╗ March┬╗ February┬╗ January┬╗ Elizabeth Kelly Kelly named Fellow of the American Statistical Association The American Statistical Association (ASA) has honored Elizabeth Kelly with the title of Fellow. - 8/2/16 Beverly Aikin, left, and Ellen Cerreta Aikin and Cerreta named as ASM Fellows ASM International named Beverly Aikin and

  16. Semiconductor Science and Technology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    lighting ReSeaRch & development at Sandia national laboRatoRieS The bridge to a new way of lighting the world ssls.sandia.gov Initiates decades-long investment into compound semiconductor science and technology, eventually establishing its Center for Compound Semiconductor Science and Technology 1 9 7 7 Begins investing in gallium nitride (GaN) materials, physics, and device capabilities 1 9 9 5 Launches its Grand Challenge Laboratory Directed Research and Development Project, "A

  17. Thomas Jefferson High School for Science & Technology National Science

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Bowl® Champion | Department of Energy Thomas Jefferson High School for Science & Technology National Science Bowl® Champion Thomas Jefferson High School for Science & Technology National Science Bowl® Champion May 2, 2005 - 12:40pm Addthis WASHINGTON, DC -- "The Incompleteness Theorem" was the answer to a question on mathematics that today clinched the 2005 National Science Bowl® championship for the Thomas Jefferson High School for Science & Technology team from

  18. Annotation of the Clostridium Acetobutylicum Genome

    SciTech Connect (OSTI)

    Daly, M. J.

    2004-06-09

    The genome sequence of the solvent producing bacterium Clostridium acetobutylicum ATCC824, has been determined by the shotgun approach. The genome consists of a 3.94 Mb chromosome and a 192 kb megaplasmid that contains the majority of genes responsible for solvent production. Comparison of C. acetobutylicum to Bacillus subtilis reveals significant local conservation of gene order, which has not been seen in comparisons of other genomes with similar, or, in some cases, closer, phylogenetic proximity. This conservation allows the prediction of many previously undetected operons in both bacteria.

  19. Automatic annotation of organellar genomes with DOGMA

    SciTech Connect (OSTI)

    Wyman, Stacia; Jansen, Robert K.; Boore, Jeffrey L.

    2004-06-01

    Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of extra-nuclear organellar (chloroplast and animal mitochondrial) genomes. It is a web-based package that allows the use of comparative BLAST searches to identify and annotate genes in a genome. DOGMA presents a list of putative genes to the user in a graphical format for viewing and editing. Annotations are stored on our password-protected server. Complete annotations can be extracted for direct submission to GenBank. Furthermore, intergenic regions of specified length can be extracted, as well the nucleotide sequences and amino acid sequences of the genes.

  20. ASCR Science Network Requirements

    SciTech Connect (OSTI)

    Dart, Eli; Tierney, Brian

    2009-08-24

    The Energy Sciences Network (ESnet) is the primary provider of network connectivity for the US Department of Energy Office of Science, the single largest supporter of basic research in the physical sciences in the United States. In support of the Office of Science programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs that it serves. This focus has helped ESnet to be a highly successful enabler of scientific discovery for over 20 years. In April 2009 ESnet and the Office of Advanced Scientific Computing Research (ASCR), of the DOE Office of Science, organized a workshop to characterize the networking requirements of the programs funded by ASCR. The ASCR facilities anticipate significant increases in wide area bandwidth utilization, driven largely by the increased capabilities of computational resources and the wide scope of collaboration that is a hallmark of modern science. Many scientists move data sets between facilities for analysis, and in some cases (for example the Earth System Grid and the Open Science Grid), data distribution is an essential component of the use of ASCR facilities by scientists. Due to the projected growth in wide area data transfer needs, the ASCR supercomputer centers all expect to deploy and use 100 Gigabit per second networking technology for wide area connectivity as soon as that deployment is financially feasible. In addition to the network connectivity that ESnet provides, the ESnet Collaboration Services (ECS) are critical to several science communities. ESnet identity and trust services, such as the DOEGrids certificate authority, are widely used both by the supercomputer centers and by collaborations such as Open Science Grid (OSG) and the Earth System Grid (ESG). Ease of use is a key determinant of the scientific utility of network-based services. Therefore, a key enabling aspect for scientists beneficial use of high

  1. Southeastern Science Policy Colloquium

    SciTech Connect (OSTI)

    Humphries, F.

    1995-06-22

    This conference covers four main topics: (1) Southeastern Labor Market and its Impact on Corporate/Industry Development; (2) New Issues for Science and Technology in the Year 2000 and Beyond; (3) The Role of Academia in Developing the Labor Force of the Southeast; and (4) K-12 Education: Challenges for the 21st Century.

  2. Los Alamos ScienceFest

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Los Alamos ScienceFest Los Alamos ScienceFest WHEN: Jul 16, 2015 12:00 AM - Jul 18, 2015 6:00 PM WHERE: Los Alamos, New Mexico CONTACT: Jessica Privette 505 667-0375 CATEGORY: Bradbury INTERNAL: Calendar Login Los Alamos ScienceFest July 16-18, 2015 Event Description A 3-day science festival running July 16-18, 2015 Bradbury Events @ Los Alamos ScienceFest Join us during Los Alamos ScienceFest!-a 3-day festival of interactive demonstrations, hands-on activities and dynamic speakers meant to

  3. Taking Science to School: NRC Recommendations for K-8 Science...

    Office of Scientific and Technical Information (OSTI)

    Taking Science to School: NRC Recommendations for K-8 Science Back to the OSTI News Listing for 2006 (AIP Bulletin) Based on the most recent research on learning and cognitive ...

  4. Students Sharpen Science and Math Skills at Middle School Science...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Students Sharpen Science and Math Skills at Middle School Science Bowl March 8, 2004 Golden, Colo. - The buzzer has sounded, the clock is ticking and all eyes are on you-what is ...

  5. Webinar December 2: Materials Genome Initiative

    Broader source: Energy.gov [DOE]

    The Energy Department will present a live webinar entitled "Materials Genome Initiative" on Tuesday, December 2, from 12:00 to 1:00 p.m. Eastern Standard Time.

  6. Phytozome System for Comparative Plant Genomics

    Energy Science and Technology Software Center (OSTI)

    2011-09-27

    Phytozome is a joint project of the Department of Energy's Joint Genome Institute and the UC Berkeley Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. Families of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release 7.0, Phytozome providesmore┬á┬╗ access to twenty-five sequenced and annotated green plant genomes which have been clustered into gene families at eleven evolutionarily significant nodes., Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are lyper-linked and searchable.┬ź┬áless

  7. Genome Engineering with TAL Effector Nucleases

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    TAL Effector Nucleases Print Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such...

  8. Prokaryotic Genomes from Microbes Online Database

    DOE Data Explorer [Office of Scientific and Technical Information (OSTI)]

    Alm, Eric J.; Huang, Katherine H.; Price, Morgan N.; Koche, Richard P.; Keller, Keith; Dubchak, Inna L.; Arkin, Adam P.

    To describe the potential functions of genes, MicrobesOnline includes protein family analyses (from InterPro and COG), metabolic maps (from KEGG), links to research papers (from UniProt and PubMed), and operon predictions for every genome. To examine each gene's evolutionary history, MicrobesOnline includes precomputed phylogenetic trees for all the gene families. It displays gene trees with genomic context or it compares the gene tree to the species tree. The tools provided with MicrobesOnline allow users to: compute customized motifs, sequence alignments, and phylogenetic trees change expression patterns in metabolic maps annotate genes in various ways The database contains more than 430 genomes. A browse tree tool and a genome browser are available, along with specialized search capabilities. (Specialized Interface)

  9. Genome Engineering with TAL Effector Nucleases

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    TAL Effector Nucleases Print Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such as...

  10. Justice and the Human Genome Project

    SciTech Connect (OSTI)

    Murphy, T.F.; Lappe, M.

    1992-01-01

    Most of the essays gathered in this volume were first presented at a conference, Justice and the Human Genome, in Chicago in early November, 1991. The goal of the, conference was to consider questions of justice as they are and will be raised by the Human Genome Project. To achieve its goal of identifying and elucidating the challenges of justice inherent in genomic research and its social applications the conference drew together in one forum members from academia, medicine, and industry with interests divergent as rate-setting for insurance, the care of newborns, and the history of ethics. The essays in this volume address a number of theoretical and practical concerns relative to the meaning of genomic research.

  11. Justice and the Human Genome Project

    SciTech Connect (OSTI)

    Murphy, T.F.; Lappe, M.

    1992-12-31

    Most of the essays gathered in this volume were first presented at a conference, Justice and the Human Genome, in Chicago in early November, 1991. The goal of the, conference was to consider questions of justice as they are and will be raised by the Human Genome Project. To achieve its goal of identifying and elucidating the challenges of justice inherent in genomic research and its social applications the conference drew together in one forum members from academia, medicine, and industry with interests divergent as rate-setting for insurance, the care of newborns, and the history of ethics. The essays in this volume address a number of theoretical and practical concerns relative to the meaning of genomic research.

  12. Genomic definition of species. Revision 1

    SciTech Connect (OSTI)

    Crkvenjakov, R.; Dramanac, R.

    1992-06-01

    A genome is the sum total of the DNA sequences in the cells of an individual organism. The common usage that species possess genomes comes naturally to biochemists, who have shown that all protein and nucleic acid molecules are at the same time species and individual-specific, with minor individual variations being superimposed on a consensus sequence that is constant for a species. By extension, this property is attributed to the common features of DNA in the chromosomes of members of a given species and is called (species) genome. The definition of species based on chromosomes, genes, or genome common to its member organisms has been implied or mentioned in passing numerous times. Some population biologists think that members of species have similar ``homeostatic genotypes,`` which are to a degree resistant to mutation or environmental change in the production of a basic phenotype.

  13. Genomes to life project quarterly report February 2003.

    SciTech Connect (OSTI)

    Heffelfinger, Grant S.

    2003-08-01

    This SAND report provides the technical progress for the first quarter (through February 2003) of the Sandia-led project, 'Carbon Sequestration in Synechococcus Sp.: From Molecular Machines to Hierarchical Modeling,' funded by the DOE Office of Science Genomes to Life Program. Understanding, predicting, and perhaps manipulating carbon fixation in the oceans has long been a major focus of biological oceanography and has more recently been of interest to a broader audience of scientists and policy makers. It is clear that the oceanic sinks and sources of CO2 are important terms in the global environmental response to anthropogenic atmospheric inputs of CO2 and that oceanic microorganisms play a key role in this response. However, the relationship between this global phenomenon and the biochemical mechanisms of carbon fixation in these microorganisms is poorly understood. In this project, we will investigate the carbon sequestration behavior of Synechococcus Sp., an abundant marine cyanobacteria known to be important to environmental responses to carbon dioxide levels, through experimental and computational methods. This project is a combined experimental and computational effort with emphasis on developing and applying new computational tools and methods. Our experimental effort will provide the biology and data to drive the computational efforts and include significant investment in developing new experimental methods for uncovering protein partners, characterizing protein complexes, identifying new binding domains. We will also develop and apply new data measurement and statistical methods for analyzing microarray experiments. Computational tools will be essential to our efforts to discover and characterize the function of the molecular machines of Synechococcus. To this end, molecular simulation methods will be coupled with knowledge discovery from diverse biological data sets for high-throughput discovery and characterization of protein-protein complexes. In

  14. Accelerating Biofuel Feedstock Crop Improvement with Miscanthus Genomics (2014 DOE JGI Genomics of Energy & Environment Meeting)

    SciTech Connect (OSTI)

    Swaminathan, Kankshita

    2014-03-20

    Kankshita Swaminathan of the Energy Biosciences Institute speaks at the 9th Annual Genomics of Energy & Environment Meeting on March 20, 2014 in Walnut Creek, Calif.

  15. Facilities and Equipment for Genomics/Comparative Functional Genomics at New York University

    SciTech Connect (OSTI)

    Lennie, Peter

    2006-06-29

    This award was for partial support for the renovation of space to house research laboratories and moveable scientific equipment for genomics/functional geonomics at New York University.

  16. The Human Genome Diversity Project

    SciTech Connect (OSTI)

    Cavalli-Sforza, L.

    1994-12-31

    The Human Genome Diversity Project (HGD Project) is an international anthropology project that seeks to study the genetic richness of the entire human species. This kind of genetic information can add a unique thread to the tapestry knowledge of humanity. Culture, environment, history, and other factors are often more important, but humanity`s genetic heritage, when analyzed with recent technology, brings another type of evidence for understanding species` past and present. The Project will deepen the understanding of this genetic richness and show both humanity`s diversity and its deep and underlying unity. The HGD Project is still largely in its planning stages, seeking the best ways to reach its goals. The continuing discussions of the Project, throughout the world, should improve the plans for the Project and their implementation. The Project is as global as humanity itself; its implementation will require the kinds of partnerships among different nations and cultures that make the involvement of UNESCO and other international organizations particularly appropriate. The author will briefly discuss the Project`s history, describe the Project, set out the core principles of the Project, and demonstrate how the Project will help combat the scourge of racism.

  17. Science Highlights | U.S. DOE Office of Science (SC)

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Science Highlights Materials Sciences and Engineering (MSE) Division MSE Home About Research Areas Reports and Activities Science Highlights Highlight Archives Principal Investigators' Meetings BES Home Science Highlights Print Text Size: A A A FeedbackShare Page Filter by Performer Or press Esc Key to close. close Select all that apply. University DOE Laboratory Industry SC User Facilities ASCR User Facilities [+] Options ┬ź ASCR User Facilities National Energy Research Scientific Computing

  18. Materials Science: the science of everything | National Nuclear Security

    National Nuclear Security Administration (NNSA)

    Administration | (NNSA) Materials Science: the science of everything Friday, July 24, 2015 - 10:57am Y-12 Senior Metallurgist Steven Dekanich and NASA Materials Science Branch Chief Steve McDanels teamed up to lead a weeklong materials science camp that took at the University of Tennessee in Knoxville. The camp, which has been held since 2004, was jointly sponsored by Consolidated Nuclear Services (CNS), Oak Ridge National Laboratory, the University of Tennessee and the Knoxville chapter of

  19. Genome Engineering with TAL Effector Nucleases

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genome Engineering with TAL Effector Nucleases Print Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such as the correction of gene sequences in patients suffering from genetic diseases, the modification or insertion of genes in plants, and the generation of unique cell lines for treatment of diseases such as cancer. GE requires the development of molecular tools that can search out and bind to one

  20. Genome Engineering with TAL Effector Nucleases

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genome Engineering with TAL Effector Nucleases Print Genome engineering (GE), an emerging discipline in which a DNA sequence is altered at a single position, has a wide variety of potential uses, such as the correction of gene sequences in patients suffering from genetic diseases, the modification or insertion of genes in plants, and the generation of unique cell lines for treatment of diseases such as cancer. GE requires the development of molecular tools that can search out and bind to one