Sample records for biological systems science

  1. Systems Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level:Energy: Grid Integration Redefining What'sis Taking Over Our InstagramStructureProposed Action(InsertAbout the GeothermalSystems Biology

  2. Systems Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level:Energy: Grid Integration Redefining What'sis Taking Over Our InstagramStructureProposed Action(InsertAbout the Geothermal TechnologiesSystems

  3. The Evolutionary Systems Biology Team Synthetic Biology/Citizen Science Post-doctoral position

    E-Print Network [OSTI]

    The Evolutionary Systems Biology Team Synthetic Biology/Citizen Science Post-doctoral position We in citizen science projects.The post-doc will join the extended CRI lab that includes synthetic and systems-sourcing, DIY approaches and gamification as part of a new European- funded project, Citizen CyberLab - a three

  4. Biological Systems Science Division (BSSD) | U.S. DOE Office of Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645U.S. DOE Office511041clothAdvanced Materials Advanced Materials Find Find More LikeAndreasHelp(SC) Biological Systems

  5. Department of Systems Biology & Bioinformatics

    E-Print Network [OSTI]

    Rostock, Universität

    Department of Systems Biology & Bioinformatics Faculty of Computer Sciences & Electrical, comparability and fairness. Practical Aspects and Soft Skills Technical Achievement Background understanding

  6. Systems Biology. | EMSL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Biology. Systems Biology. Abstract: The biology revolution over the last 50 years has been driven by the ascendancy of molecular biology. This was enthusiastically embraced by most...

  7. Department of Energy's Biological and Environmental Research Strategic Data Roadmap for Earth System Science

    SciTech Connect (OSTI)

    Williams, Dean N. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Palanisamy, Giri [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Shipman, Galen [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Boden, Thomas A. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Voyles, Jimmy W. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2014-04-25T23:59:59.000Z

    Rapid advances in experimental, sensor, and computational technologies and techniques are driving exponential growth in the volume, acquisition rate, variety, and complexity of scientific data. This wealth of scientifically meaningful data has tremendous potential to lead to scientific discovery. However, to achieve scientific breakthroughs, these data must be exploitable—they must be analyzed effectively and efficiently and the results shared and communicated easily within the wider Department of Energy’s (DOE’s) Biological and Environmental Research (BER) Climate and Environmental Sciences Division (CESD) community. The explosion in data complexity and scale makes these tasks exceedingly difficult to achieve, particularly given that an increasing number of disciplines are working across techniques, integrating simulation and experimental or observational results (see Table 5 in Appendix 2). Consequently, we need new approaches to data management, analysis, and visualization that provide research teams with easy-to-use and scalable end-to-end solutions. These solutions must facilitate (and where feasible, automate and capture) every stage in the data lifecycle (shown in Figure 1), from collection to management, annotation, sharing, discovery, analysis, and visualization. In addition, the core functionalities are the same across climate science communities, but they require customization to adapt to specific needs and fit into research and analysis workflows. To this end, the mission of CESD’s Data and Informatics Program is to integrate all existing and future distributed CESD data holdings into a seamless and unified environment for the acceleration of Earth system science.

  8. Biological Engineering integrates life sciences

    E-Print Network [OSTI]

    Walter, M.Todd

    mitigating 40 million pounds of carbon dioxide greenhouse gases each year, and would pay for itself in les with the constantly evolving science of biology, the field of Biological Engineering tackles local, national

  9. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology Genomics and Systems Biology Los Alamos scientists perform research in functional genomics and structural genomics, and applications for such work...

  10. CollegeofScience Biological Sciences

    E-Print Network [OSTI]

    Hickman, Mark

    ,populations,and even ecosystems. Our courses will help prepare you for a career in biology,be it in biodiversity

  11. Biological Science | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on Delicious Rank EERE: Alternative Fuels Data Center HomeIdleBiological Science Biological Science The protozoan

  12. On Biology as an Emergent Science

    E-Print Network [OSTI]

    H. Pierre Noyes

    2007-05-31T23:59:59.000Z

    Biology is considered here as an "emergent science" in the sense of Anderson and of Laughlin and Pines. It is demonstrated that a straightforward mathematical definition of "biological system" is useful in showing how biology differs in structure from the lower levels in Anderson's "More is Different" hierarchy. Using cells in a chemostat as a paradigmatic exemplar of a biological system, it is found that a coherent collection of metabolic pathways through a single cell in the chemostat also satisfies the proposed definition of a biological system. This provides a theoretical and mathematical underpinning for Young's fundamental model of biological organization and integration. Evidence for the therapeutic efficacy of Young's method of analysis is provided by preliminary results of clinical trials of a specific application of Young's model to the treatment of cancer cachexia.

  13. Roadmap: Environmental and Conservation Biology Conservation Biology Bachelor of Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Environmental and Conservation Biology ­Conservation Biology Bachelor of Science [AS or upper division) 4 #12;Roadmap: Environmental and Conservation Biology ­Conservation Biology Bachelor Summary on page 2 Conservation Biology Concentration Elective 2 See note 3 on page 2 Semester Five: [15

  14. Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645 3,625govInstrumentstdmadapInactiveVisiting the TWP TWPAlumniComplexMaterialProductionBiologicalLaboratories

  15. School of Environmental and Biological Sciences

    E-Print Network [OSTI]

    Goodman, Robert M.

    School of Environmental and Biological Sciences #12;Who We are and What We do Students at the Rutgers School of Environmental and Biological Sciences are part of a rich history of learning, innovation) Biological Sciences Biotechnology Animal Biotechnology Bioinformatics Bioscience Policy and Management

  16. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology LANL leads the world in computational finishing of microbial genomes Read caption + In 2013, Los Alamos scientist Richard Sayre and his team...

  17. EMSL Biological Interactions and Dynamics Science Theme Advisory...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Biological Interactions and Dynamics Science Theme Advisory Panel Workshop EMSL Biological Interactions and Dynamics Science Theme Advisory Panel Workshop "Biological Interactions...

  18. Genomics-Bioinformatics Day: "Bioinformatics, Computational Biology, Systems Biology & Mathematical

    E-Print Network [OSTI]

    Goldschmidt, Christina

    3rd Genomics-Bioinformatics Day: "Bioinformatics, Computational Biology, Systems Biology on "Bioinformatics, Computational Biology, Systems Biology & Mathematical Biology: Their Relationship". Genomics, Bioinformatics, Computational Biology have a tremendous appeal and these fields have originated or grown

  19. Roadmap: Environmental and Conservation Biology Conservation Biology Bachelor of Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Environmental and Conservation Biology ­Conservation Biology Bachelor of Science [AS Geology Elective 3-4 See note 2 on page 2 General Elective 4 #12;Roadmap: Environmental and Conservation Summary on page 2 Conservation Biology Concentration Elective 2 See note 3 on page 2 Semester Five: [15

  20. 7th Annual Systems Biology Symposium: Systems Biology and Engineering

    SciTech Connect (OSTI)

    Galitski, Timothy P.

    2008-04-01T23:59:59.000Z

    Systems biology recognizes the complex multi-scale organization of biological systems, from molecules to ecosystems. The International Symposium on Systems Biology has been hosted by the Institute for Systems Biology in Seattle, Washington, since 2002. The annual two-day event gathers the most influential researchers transforming biology into an integrative discipline investingating complex systems. Engineering and application of new technology is a central element of systems biology. Genome-scale, or very small-scale, biological questions drive the enigneering of new technologies, which enable new modes of experimentation and computational analysis, leading to new biological insights and questions. Concepts and analytical methods in engineering are now finding direct applications in biology. Therefore, the 2008 Symposium, funded in partnership with the Department of Energy, featured global leaders in "Systems Biology and Engineering."

  1. NATIONAL CENTRE FOR BIOLOGICAL SCIENCES Annual Maintenance Contract for Electrical Systems in

    E-Print Network [OSTI]

    Udgaonkar, Jayant B.

    Maintenance Contract for Electrical systems including substations in Mandara hostel-CB site, NCBS : Rs.47,729.00 4. COST OF TENDER DOCUMENT : Rs. 500/- 5. SALE PERIOD : 13/12/2013 TO 23/12/2013 6. TIME:________________DATE:____________ __________________________________ FOR A SUM OF RS. ________________ TOWARDS __________________________________THE COST OF TENDER DOCUMENT

  2. VEHICLE OPERATING PROCEDURES DEPARTMENT OF BIOLOGICAL SCIENCE

    E-Print Network [OSTI]

    Ronquist, Fredrik

    VEHICLE OPERATING PROCEDURES DEPARTMENT OF BIOLOGICAL SCIENCE GENERAL INFORMATION Vehicles resposniblity and disciplinary action. Vehicles may be used by faculty or staff from other departments complete the vehicle usage agreement form certifying that they have a valid driver's license

  3. Systems Biology | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    of interdisciplinary scientists. Additional systems biology resources Research Highlights Media Mentions Publications Newsletters Biosciences Division Recent news releases 11...

  4. Brent Craig Christner Department of Biological Sciences

    E-Print Network [OSTI]

    Christner, Brent C.

    , 1996. Thesis advisor: John J. Rowe B.S., Molecular Biology and Biotechnology, Westminster College, New. Assistant Research Professor, August 2004-2006. Department of Land Resources and Environmental Sciences of John C. Priscu, Department of Land Resources and Environmental Sciences, Montana State University

  5. Purdue AgronomyPurdue AgronomyCrop, Soil, and EnvironmEntal SCiEnCES Wastewater Biological Oxygen Demand in Septic Systems

    E-Print Network [OSTI]

    Holland, Jeffrey

    , commonly called a biomat. This biomat is where the bulk of biological wastewater treatment occursPurdue AgronomyPurdue AgronomyCrop, Soil, and EnvironmEntal SCiEnCES Wastewater Biological Oxygen to surface or groundwater it can result in low dissolved oxygen #12; Wastewater Biological Oxygen Demand

  6. Carbon Cycling and Biosequestration Integrating Biology and Climate Through Systems Science Report from the March 2008 Workshop

    SciTech Connect (OSTI)

    Graber, J.; Amthor, J.; Dahlman, R.; Drell, D.; Weatherwax, S.

    2008-12-01T23:59:59.000Z

    One of the most daunting challenges facing science in the 21st Century is to predict how Earth's ecosystems will respond to global climate change. The global carbon cycle plays a central role in regulating atmospheric carbon dioxide (CO{sub 2}) levels and thus Earth's climate, but our basic understanding of the myriad of tightly interlinked biological processes that drive the global carbon cycle remains limited at best. Whether terrestrial and ocean ecosystems will capture, store, or release carbon is highly dependent on how changing climate conditions affect processes performed by the organisms that form Earth's biosphere. Advancing our knowledge of biological components of the global carbon cycle is thus crucial to predicting potential climate change impacts, assessing the viability of climate change adaptation and mitigation strategies, and informing relevant policy decisions. Global carbon cycling is dominated by the paired biological processes of photosynthesis and respiration. Photosynthetic plants and microbes of Earth's land-masses and oceans use solar energy to transform atmospheric CO{sub 2} into organic carbon. The majority of this organic carbon is rapidly consumed by plants or microbial decomposers for respiration and returned to the atmosphere as CO{sub 2}. Coupling between the two processes results in a near equilibrium between photosynthesis and respiration at the global scale, but some fraction of organic carbon also remains in stabilized forms such as biomass, soil, and deep ocean sediments. This process, known as carbon biosequestration, temporarily removes carbon from active cycling and has thus far absorbed a substantial fraction of anthropogenic carbon emissions.

  7. Biological and Chemical Sciences Department of Biological and Chemical Sciences

    E-Print Network [OSTI]

    Heller, Barbara

    Chromatography Regulatory Science Synthesis and Characterization of Inorganic Materials Synthesis Analytical Method Development Analytical Spectroscopy Characterization of Inorganic and Organic Materials, molecular biophysics and biochem- istry; analytical chemistry, inorganic chemistry, materi- als chemistry

  8. Ecology and Evolutionary Biology The Wiess School of Natural Sciences

    E-Print Network [OSTI]

    Richards-Kortum, Rebecca

    Ecology and Evolutionary Biology The Wiess School of Natural Sciences Chair Evan Siemann Professors of Ecology and Evolutionary Biologyoffersabroadrangeofcoursesinthebiosciences:animalbehavior,animal biology, bioinformatics, conservation biology, diseases, ecology, evolutionary biology, field ecology, genetics, genomics

  9. AGRI-SCIENCE CHEMICAL BIOLOGY

    E-Print Network [OSTI]

    photosynthetic efficiency Improve chemical agronomic and agro-ecological control measures Modelling through translation of chemical biology tools and technologies Control weeds, disease and pests Minimise a platform to steer future research and policy directions. · Encourage external outreach to engage

  10. Biological Systems Facilities

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    encompasses the areas of priority pathogen detection, extremophile biology and genomics, biohydrometallurgy, biomass conversion, coal bioprocessing, biodegradation...

  11. Example 1 -LIFE SCIENCES/SCIENCES DE LA VIE Biology A Gene, Cell, Molecular

    E-Print Network [OSTI]

    Reid, Nancy

    (Immunology Host-cell interactions, Immune response, antigens, antibodies) LS9 Microbiology (Microbial ecology/behavioural and cognitive neuroscience (Behavioural neuroscience ­ learning, reward, mot., Sensory systems and perception;Example 1 - LIFE SCIENCES/SCIENCES DE LA VIE Biology C - Ecology LS18 General Ecology (Physiological

  12. VEHICLE USAGE AGREEMENT DEPARTMENT OF BIOLOGICAL SCIENCE

    E-Print Network [OSTI]

    Ronquist, Fredrik

    VEHICLE USAGE AGREEMENT DEPARTMENT OF BIOLOGICAL SCIENCE All drivers of vehicles must certify to the following: 1. I certify that I have a valid driver's license appropriate for the vehicle type and will abide belts. 2. I have read and understand the vehicle operating policies and procedures as defined

  13. Brent Craig Christner Department of Biological Sciences

    E-Print Network [OSTI]

    Christner, Brent C.

    , Ohio, 1996. Thesis advisor: John J. Rowe B.S., Molecular Biology and Biotechnology, Westminster College Resources and Environmental Sciences, Montana State University, Bozeman, Montana. Postdoctoral Researcher, June 2002-August 2004. Laboratory of John C. Priscu, Department of Land Resources and Environmental

  14. School of Biological Sciences Undergraduate Scholarships & Awards

    E-Print Network [OSTI]

    Barrett, Jeffrey A.

    School of Biological Sciences Undergraduate Scholarships & Awards The following items are due not submit any additional items. 4. Award winners will be notified during the middle of May. 5. To be eligible for any Bio Sci Scholarships/Awards you must be a U.S. citizen, an eligible non

  15. Computational Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645U.S. DOEThe Bonneville Power Administration would like submit theInnovationComputational Biology SHARE Computational

  16. ASTRONOMY BIOLOGY CHEMISTRY COMPUTER-SCIENCE GEOGRAPHY MATHEMATICS PHYSICS STATISTICS

    E-Print Network [OSTI]

    Bernstein, Phil

    BIOMEDICAL-ENGINEERING ELECTRONIC- ENGINEERING ASTRONOMY BIOLOGY CHEMISTRY COMPUTER-SCIENCE GEOGRAPHY MATHEMATICS PHYSICS STATISTICS HEALTHCARE BIOMEDICAL-ENGINEERING ELECTRONIC-ENGINEERING ASTRONOMY BIOLOGY C H HEALTHCARE BIOMEDICAL-ENGINEERING ELECTRONIC-ENGINEERING ASTRONOMY BIOLOGY CHEMISTRY COMPUTER

  17. Roadmap: Biology Organismal Biology Bachelor of Science [AS-BS-BSCI-ORBI

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Biology ­ Organismal Biology ­ Bachelor of Science [AS-BS-BSCI-ORBI] College of Arts/LNHD This roadmap is a recommended semester-by-semester plan of study for this major. However, courses General Elective 3 #12;Roadmap: Biology ­ Organismal Biology ­ Bachelor of Science [AS

  18. Introduction to Bioinformatics A Systems Biology Approach

    E-Print Network [OSTI]

    Rocha, Luis

    Introduction to Bioinformatics A Systems Biology Approach Luis M. Rocha Complex Systems Modeling Computational Biology to Bioinformatics Course Layout: March 11-15, 2002 #12;P Systems Biology P Synthetic, Multi- Disciplinary Approach

  19. Modular design of biological systems

    E-Print Network [OSTI]

    Norville, Julie Erin, 1980-

    2012-01-01T23:59:59.000Z

    The focus of my research is the development of technology for building compound biological systems from simpler pieces. I designed BioScaffold parts, a family of variable regions that can be inserted into a DNA sequence ...

  20. Certificate in Geographic Information Science The Environmental Science programs and the Departments of Earth Sciences and Biology offer

    E-Print Network [OSTI]

    Adl, Sina

    Certificate in Geographic Information Science The Environmental Science programs and the Departments of Earth Sciences and Biology offer a Certificate in Geographic Information Science information science. This Certificate can be completed by a student in a BSc program, in addition

  1. November 2009 Peter Fratzl 1 MPG 2010+: BIOLOGICAL MATERIALS SCIENCES

    E-Print Network [OSTI]

    recognized that material properties can be critical for the biological function of molecules, tissuesNovember 2009 Peter Fratzl 1 MPG 2010+: BIOLOGICAL MATERIALS SCIENCES At a glance: A new field at the interface between biology and the materials sciences helps elucidating structure-function relations

  2. 6th Annual Systems Biology Symposium: Systems Biology and the Environment

    SciTech Connect (OSTI)

    Galitski, Timothy, P.

    2007-04-01T23:59:59.000Z

    Systems biology recognizes the complex multi-scale organization of biological systems, from molecules to ecosystems. The International Symposium on Systems Biology is an annual two-day event gathering the most influential researchers transforming biology into an integrative discipline investigating complex systems. In recognition of the fundamental similarity between the scientific problems addressed in environmental science and systems biology studies at the molecular, cellular, and organismal levels, the 2007 Symposium featured global leaders in “Systems Biology and the Environment.” The objective of the 2007 “Systems Biology and the Environment” International Symposium was to stimulate interdisciplinary thinking and research that spans systems biology and environmental science. This Symposium was well aligned with the DOE’s Genomics:GTL program efforts to achieve scientific objectives for each of the three DOE missions: • Develop biofuels as a major secure energy source for this century, • Develop biological solutions for intractable environmental problems, and • Understand biosystems’ climate impacts and assess sequestration strategies Our scientific program highlighted world-class research exemplifying these priorities. The Symposium featured 45 minute lectures from 12 researchers including: Penny/Sallie Chisholm of MIT gave the keynote address “Tiny Cells, Global Impact: What Prochlorococcus Can Teach Us About Systems Biology”, plus Jim Fredrickson of PNNL, Nitin Baliga of ISB, Steve Briggs of UCSD, David Cox of Perlegen Sciences, Antoine Danchin of Institut Pasteur, John Delaney of the U of Washington, John Groopman of Johns Hopkins, Ben Kerr of the U of Washington, Steve Koonin of BP, Elliott Meyerowitz of Caltech, and Ed Rubin of LBNL. The 2007 Symposium promoted DOE’s three mission areas among scientists from multiple disciplines representing academia, non-profit research institutions, and the private sector. As in all previous Symposia, we had excellent attendance of participants representing 20-30 academic or research-oriented facilities along with 25-30 private corporations from 5-10 countries. To broaden the audience for the Symposium and ensure the continued accessibility of the presentations, we made the presentation videos available afterward on the ISB’s website.

  3. Complex biological and bio-inspired systems

    SciTech Connect (OSTI)

    Ecke, Robert E [Los Alamos National Laboratory

    2009-01-01T23:59:59.000Z

    The understanding and characterization ofthe fundamental processes of the function of biological systems underpins many of the important challenges facing American society, from the pathology of infectious disease and the efficacy ofvaccines, to the development of materials that mimic biological functionality and deliver exceptional and novel structural and dynamic properties. These problems are fundamentally complex, involving many interacting components and poorly understood bio-chemical kinetics. We use the basic science of statistical physics, kinetic theory, cellular bio-chemistry, soft-matter physics, and information science to develop cell level models and explore the use ofbiomimetic materials. This project seeks to determine how cell level processes, such as response to mechanical stresses, chemical constituents and related gradients, and other cell signaling mechanisms, integrate and combine to create a functioning organism. The research focuses on the basic physical processes that take place at different levels ofthe biological organism: the basic role of molecular and chemical interactions are investigated, the dynamics of the DNA-molecule and its phylogenetic role are examined and the regulatory networks of complex biochemical processes are modeled. These efforts may lead to early warning algorithms ofpathogen outbreaks, new bio-sensors to detect hazards from pathomic viruses to chemical contaminants. Other potential applications include the development of efficient bio-fuel alternative-energy processes and the exploration ofnovel materials for energy usages. Finally, we use the notion of 'coarse-graining,' which is a method for averaging over less important degrees of freedom to develop computational models to predict cell function and systems-level response to disease, chemical stress, or biological pathomic agents. This project supports Energy Security, Threat Reduction, and the missions of the DOE Office of Science through its efforts to accurately model biological systems at the molecular and cellular level. The project's impact encompasses applications to biofuels, to novel sensors and to materials with broad use for energy or threat reduction. The broad, interdisciplinary approach of CNLS offers the unparalleled strength of combining science backgrounds and expertise -a unique and important asset in attacking the complex science of biological organisms. This approach also allows crossfertilization, with concepts and techniques transferring across field boundaries.

  4. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645U.S. DOE Office of Science (SC) Environmental AssessmentsGeoffrey Campbelllong version)ConfinementGeneralGenomics and

  5. Biological Production of Hydrogen DOE Office of Science,

    E-Print Network [OSTI]

    .Houghton@science.doe.gov #12;Biology transforms energy in a series ofBiology transforms energy in a series University Artificial Chromosome: Minimum Genome Oligo Assembly Microalgae production facility of Cyanotech

  6. Systems biology approach to bioremediation

    SciTech Connect (OSTI)

    Chakraborty, R.; Wu, C. H.; Hazen, T. C.

    2012-01-01T23:59:59.000Z

    Bioremediation has historically been approached as a ?black box? in terms of our fundamental understanding. Thus it succeeds and fails, seldom without a complete understanding of why. Systems biology is an integrated research approach to study complex biological systems, by investigating interactions and networks at the molecular, cellular, community, and ecosystem level. The knowledge of these interactions within individual components is fundamental to understanding the dynamics of the ecosystem under investigation. Understanding and modeling functional microbial community structure and stress responses in environments at all levels have tremendous implications for our fundamental understanding of hydrobiogeochemical processes and the potential for making bioremediation breakthroughs and illuminating the ?black box?.

  7. Systems Science and Engineering

    E-Print Network [OSTI]

    Suzuki, Masatsugu

    . Analysis of Variability in Systems II 4 ISE 370. Industrial Automation and Control .4 Humanities or social447 Systems Science and Industrial Engineering UNDERGRADUATE PROGRAMS The bachelor of science program in industrial and systems engineering is a new program within the Watson School. The curriculum

  8. DEPARTMENT OF BIOLOGICAL SCIENCES POLICIES AND PROCEDURES MANUAL

    E-Print Network [OSTI]

    OF THE DEPARTMENT OF BIOLOGICAL SCIENCES 1 ENVIRONMENTAL ANALYSIS 1 GOALS OF THE DEPARTMENT OF BIOLOGICAL SCIENCES 2 Information 56 Master's Degree Program 59 M.S. in Biotechnology, and a respect for, the living world through teaching and service to the public. II. ENVIRONMENTAL ANALYSIS A

  9. Systems Science Harder House

    E-Print Network [OSTI]

    Systems Science Harder House 1604 SW 10th Avenue 503-725-4960 www.sysc.pdx.edu/ M.S. Ph.D. Systems governing systems of widely differing types. Systems concepts and techniques are used extensively for both who are skilled in modern methods of decision making and systems design and who are capable

  10. Systems Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level:Energy: Grid Integration Redefining What'sis Taking Over Our InstagramStructureProposed Action(InsertAbout the Geothermal

  11. Systems biology of Microbial Communities

    SciTech Connect (OSTI)

    Navid, A; Ghim, C; Fenley, A; Yoon, S; Lee, S; Almaas, E

    2008-04-11T23:59:59.000Z

    Microbes exist naturally in a wide range of environments, spanning the extremes of high acidity and high temperature to soil and the ocean, in communities where their interactions are significant. We present a practical discussion of three different approaches for modeling microbial communities: rate equations, individual-based modeling, and population dynamics. We illustrate the approaches with detailed examples. Each approach is best fit to different levels of system representation, and they have different needs for detailed biological input. Thus, this set of approaches is able to address the operation and function of microbial communities on a wide range of organizational levels.

  12. AN INTEGRATED BIOLOGICAL CONTROL SYSTEM AT HANFORD

    SciTech Connect (OSTI)

    JOHNSON AR; CAUDILL JG; GIDDINGS RF; RODRIGUEZ JM; ROOS RC; WILDE JW

    2010-02-11T23:59:59.000Z

    In 1999 an integrated biological control system was instituted at the U.S. Department of Energy's Hanford Site. Successes and changes to the program needed to be communicated to a large and diverse mix of organizations and individuals. Efforts at communication are directed toward the following: Hanford Contractors (Liquid or Tank Waste, Solid Waste, Environmental Restoration, Science and Technology, Site Infrastructure), General Hanford Employees, and Hanford Advisory Board (Native American Tribes, Environmental Groups, Local Citizens, Washington State and Oregon State regulatory agencies). Communication was done through direct interface meetings, individual communication, where appropriate, and broadly sharing program reports. The objectives of the communication efforts was to have the program well coordinated with Hanford contractors, and to have the program understood well enough that all stakeholders would have confidence in the work performed by the program to reduce or elimated spread of radioactive contamination by biotic vectors. Communication of successes and changes to an integrated biological control system instituted in 1999 at the Department of Energy's Hanford Site have required regular interfaces with not only a diverse group of Hanford contractors (i.e., those responsible for liquid or tank waste, solid wastes, environmental restoration, science and technology, and site infrastructure), and general Hanford employees, but also with a consortium of designated stake holders organized as the Hanford Advisory Board (i.e., Native American tribes, various environmental groups, local citizens, Washington state and Oregon regulatory agencies, etc.). Direct interface meetings, individual communication where appropriate, and transparency of the biological control program were the methods and outcome of this effort.

  13. JIBS | Joint Institute for Biological Sciences | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    joint institute is located close to ORNL's Laboratory for Comparative and Functional Genomics, other biomolecular sciences research laboratories, and the Environmental Sciences...

  14. ROBERT B. SHORT SCHOLARSHIP IN ZOOLOGY Department of Biological Science

    E-Print Network [OSTI]

    Ronquist, Fredrik

    The Robert B. Short Scholarship in Zoology provides an award of up to $1,000 to a currently enrolled graduateROBERT B. SHORT SCHOLARSHIP IN ZOOLOGY Department of Biological Science Florida State University of the proposed off-campus experience to the applicant's biological and career interests. ELIGIBILITY Currently

  15. ASSISTANT PROFESSOR POSITION IN BIOINFORMATICS/BIOLOGICAL DATA SCIENCE

    E-Print Network [OSTI]

    Arnold, Jonathan

    level for a tenure-track faculty position in bioinformatics or computational biology starting AugustASSISTANT PROFESSOR POSITION IN BIOINFORMATICS/BIOLOGICAL DATA SCIENCE AT THE UNIVERSITY OF GEORGIA The Institute of Bioinformatics at the University of Georgia invites applications at the Assistant Professor

  16. Experiment design for systems biology

    E-Print Network [OSTI]

    Apgar, Joshua Farley

    2009-01-01T23:59:59.000Z

    Mechanism-based chemical kinetic models are increasingly being used to describe biological signaling. Such models serve to encapsulate current understanding of pathways and to enable insight into complex biological processes. ...

  17. Computers are from Mars, Organisms are from Venus: Interrelationship guide to Biology and Computer Science

    E-Print Network [OSTI]

    Kim, Junhyong

    . In recent years one active area of interdisciplinary merger has been biology and computer science. The noise youthful sciences? There is a kind of a natural affinity between biology and computer science. E is to "get over the mythical idea of an expert." Biology meets Computer Science: Computational Biology

  18. Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology

    E-Print Network [OSTI]

    Ussery, David W.

    Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology Visualisation of Large Amounts of Data Dave Ussery 27 February, 2008 #12;Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology #12;Comparative Microbial Genomics group

  19. Principles of Science Principles of Biology Reference Edition

    E-Print Network [OSTI]

    Cai, Long

    topics such as cancer, climate change and ocean health #12;How can the Principles of Biology Reference · Weekly usage reports · Advice to students seeking science careers · English communication guide to Scientific Communication · Guide to Career Planning · Insight into current science research hot topics High

  20. Supporting Advanced Scientific Computing Research Basic Energy Sciences Biological

    E-Print Network [OSTI]

    Supporting Advanced Scientific Computing Research · Basic Energy Sciences · Biological and Environmental Research · Fusion Energy Sciences · High Energy Physics · Nuclear Physics What my students Code ­http://code.google.com/p/net-almanac/ ­Beta release this week #12;Contact Information Jon Dugan

  1. Method of measurement in biological systems

    DOE Patents [OSTI]

    Turteltaub, K.W.; Vogel, J.S.; Felton, J.S.; Gledhill, B.L.: Davis, J.C.; Stanker, L.H.

    1993-05-11T23:59:59.000Z

    A method is disclosed of quantifying molecules in biological substances, comprising: selecting a biological host in which radioisotopes are present in concentrations equal to or less than those in the ambient biosphere; preparing a long-lived radioisotope labeled reactive chemical specie; administering the chemical specie to the biological host in doses sufficiently low to avoid significant overt damage to the biological system; allowing a period of time to elapse sufficient for dissemination and interaction of the chemical specie with the host throughout the biological system of the host; isolating a reacted fraction of the biological substance from the host in a manner sufficient to avoid contamination of the substance from extraneous sources; converting the fraction of biological substance by suitable means to a material which efficiently produces charged ions in at least one of several possible ion sources without introduction of significant isotopic fractionation; and measuring the radioisotope concentration in the material by means of direct isotopic counting.

  2. Complexity and Systems Biology of Microbial Biofuels

    E-Print Network [OSTI]

    Rand, David

    Complexity and Systems Biology of Microbial Biofuels 20-24 June 2011 (All and issues Theme: Biofuel systems and issues (Chair: Nigel Burroughs) 13 (Bielefeld) Biofuels from algae- challenges for industrial levels

  3. Systems Biology Knowledgebase for a New Era in Biology A Genomics:GTL Report from the May 2008 Workshop

    SciTech Connect (OSTI)

    Gregurick, S.; Fredrickson, J. K.; Stevens, R.

    2009-03-01T23:59:59.000Z

    Biology has entered a systems-science era with the goal to establish a predictive understanding of the mechanisms of cellular function and the interactions of biological systems with their environment and with each other. Vast amounts of data on the composition, physiology, and function of complex biological systems and their natural environments are emerging from new analytical technologies. Effectively exploiting these data requires developing a new generation of capabilities for analyzing and managing the information. By revealing the core principles and processes conserved in collective genomes across all biology and by enabling insights into the interplay between an organism's genotype and its environment, systems biology will allow scientific breakthroughs in our ability to project behaviors of natural systems and to manipulate and engineer managed systems. These breakthroughs will benefit Department of Energy (DOE) missions in energy security, climate protection, and environmental remediation.

  4. MASTER OF SCIENCE Information Systems

    E-Print Network [OSTI]

    Yang, Eui-Hyeok

    MASTER OF SCIENCE Information Systems LEADING INFORMATION INNOVATION www.stevens.edu/howe/IS #12 and management insight. The Master of Science in Information Systems at Stevens prepares students and current professionals to meet this industry need. The Master of Science in Information Systems (MSIS) program

  5. Controlling biological systems: the lactose regulation system of Escherichia coli

    E-Print Network [OSTI]

    Pappas, George J.

    Controlling biological systems: the lactose regulation system of Escherichia coli A. Agung Julius hybrid model of the lactose regulation system of E. coli bacteria that capture important phenomena which In this paper we present a framework that consists of modeling, abstraction and control of a biological system

  6. Request for Travel Funds for Systems Radiation Biology Workshop

    SciTech Connect (OSTI)

    Barcellos-Hoff, Mary Helen [NYU School of Medicine

    2014-03-22T23:59:59.000Z

    The 3rd International Systems Radiation Biology Workshop brought together the major European, US and Japanese research programs on radiation risk as well as selected experts representing systems biological approaches to discuss how the new methodologies could be best exploited for low dose research. A significant part of the workshop was devoted to discussions organised as breakout group sessions. To facilitate discussions number of participants was limited to 60 persons. To achieve the goals of this symposium in this international conference, support from DOE is vital. Hence, this proposal requested support in the amount of $15,000 to cover the travel expenses of international experts and radiation biology scientists from the United States. This supporting mechanism was clearly identified to the selected US participants as a conference support award from the DOE (See attached PDF). The workshop was an outstanding opportunity to strengthen interactions between leading experts in the emerging areas of radiation sciences, and will also provide opportunities for younger scientists to meet with experts and discuss their results. This workshop was designed to endorse active engagement in international collaboration. A major objective of this conference was to effectively communicate research results, in order to ensure that current thinking reflects sound science of radiation biology. Further, this international event addressed the use and success of scientific initiatives in radiation biology for policymakers, standard-setters, and the general public.

  7. Publications: Harold G. Marshall Department of Biological Sciences

    E-Print Network [OSTI]

    Hynes, Wayne L.

    1 Publications: Harold G. Marshall Department of Biological Sciences Old Dominion University, Norfolk, Virginia, 23529-0266, U.S.A. (updated April 2012) Marshall, H.G. 2012. Cyanobacteria dominance. A. Bode, E. Breton, V. Cornet, J. Gibson, M. Gosselin, E. Kapczynska, H.G. Marshall, J. Peloquin, S

  8. NATIONAL CENTRE FOR BIOLOGICAL SCIENCES TATA INSTITUTE OF FUNDAMENTAL RESEARCH

    E-Print Network [OSTI]

    Udgaonkar, Jayant B.

    NATIONAL CENTRE FOR BIOLOGICAL SCIENCES TATA INSTITUTE OF FUNDAMENTAL RESEARCH GKVK, Bellary Road/I&C from contractors who have executed similar nature and magnitude of work, for the following work. 2 to this extent should be enclosed along with the application) (a) One work of similar nature costing Rs. 8

  9. REGISTRATION FORM TEXAS TECH ANNUAL BIOLOGICAL SCIENCES SYMPOSIUM

    E-Print Network [OSTI]

    Rock, Chris

    breaks 3) Banquet Meal: West Texas BBQ @ Ranching Heritage Center Please indicate which meal option: MeatREGISTRATION FORM TEXAS TECH ANNUAL BIOLOGICAL SCIENCES SYMPOSIUM 2nd Annual Meeting, 1 - 2 April need a parking pass to park on the Texas Tech University Campus before 5:30pm on Friday, April 1st? YES

  10. SchoolofMedicalSciences BSc (Hons) Molecular Biology

    E-Print Network [OSTI]

    Levi, Ran

    Catalogue of Courses or SMS World Wide Web Pages for names). The Head of School of Medical Sciences as to the development of improved crops. Graduates in molecular biology have a wide range of career options, including, and in the transferable skills associated with mastering statistics, graphics and word processing software packages

  11. Computer Science Department Technion, IIT Algorithms in Computational Biology 236522

    E-Print Network [OSTI]

    Beimel, Amos

    Computer Science Department Technion, IIT Algorithms in Computational Biology ­ 236522 Moed A Exam Spring 2007, 24.9.07 Lecturer: Shlomo Moran TA: Ilan Gronau - Exam Duraion: 3 hours - The Exam has 3 structure can be used to answer the desired queries. 2. (23 pts) Denote by Si the sequence S after deletion

  12. Biology and Soft Matter | Neutron Sciences | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645U.S. DOE Office511041clothAdvanced Materials Advanced Materials Find Find More LikeAndreasHelp(SC) Biological

  13. A Systems Biology Approach to Infectious Disease Research: Innovating...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Systems Biology Approach to Infectious Disease Research: Innovating the Pathogen-Host Research Paradigm. A Systems Biology Approach to Infectious Disease Research: Innovating the...

  14. Comparative systems biology across an evolutionary gradient within...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    systems biology across an evolutionary gradient within the Shewanella genus . Comparative systems biology across an evolutionary gradient within the Shewanella genus . Abstract: To...

  15. SPECIAL ISSUE ON SYSTEMS BIOLOGY, JANUARY 2008 51 Stochastic Modeling and Control of Biological

    E-Print Network [OSTI]

    Pappas, George J.

    of modeling, abstraction, and control of a biological system, namely, the lactose regulation systemSPECIAL ISSUE ON SYSTEMS BIOLOGY, JANUARY 2008 51 Stochastic Modeling and Control of Biological for stochastic modeling, model abstraction, and controller design for a biological system. The first half

  16. Photosynthesis & Respiration 2009 1 Minority Science Programs School of Biological Sciences University of California, Irvine

    E-Print Network [OSTI]

    Rose, Michael R.

    Photosynthesis & Respiration 2009 1 Minority Science Programs ­ School of Biological Sciences" hetero = "another" 2. During photosynthesis, plants and phytoplankton use energy from the sun to combine: An anacharis plant in water produces oxygen when it photosynthesizes. 3. Photosynthesis takes place within

  17. Earth Systems Science Earth Systems Science at UNH

    E-Print Network [OSTI]

    Pringle, James "Jamie"

    Earth Systems Science Earth Systems Science at UNH THE UNH Institute for the Study of Earth, Oceans, and Space (EOS) Earth Systems Research Center is dedicated to understanding the Earth as an integrative scientists and students study the Earth's ecosystems, atmosphere, water, and ice using field measurements

  18. Division of Biology Faculty of Natural Sciences

    E-Print Network [OSTI]

    Rosso, Lula

    of the Earth's climate system and biota was a multi-million-year progressive cooling through the middle to the evolution of climate system, are, however, still poorly understood. One possibility is that the cooling 2011: Marine Microplankton Evolution in Response to Ancient Global Cooling Supervisors: Prof. Andy

  19. Method of measurement in biological systems

    DOE Patents [OSTI]

    Turteltaub, K.W.; Vogel, J.S.; Felton, J.S.; Gledhill, B.L.; Davis, J.C.

    1994-12-27T23:59:59.000Z

    Disclosed is a method of quantifying molecules in biological substances comprising: a. selecting a biological host in which radioisotopes are present in concentrations equal to or less than those in the ambient biosphere, b. preparing a long-lived radioisotope labeled reactive chemical specie, c. administering the chemical specie to the biological host in doses sufficiently low to avoid significant overt damage to the biological system, d. allowing a period of time to elapse sufficient for dissemination and interaction of the chemical specie with the host throughout the biological system of the host, e. isolating a reacted fraction of the biological substance from the host in a manner sufficient to avoid contamination of the substance from extraneous sources, f. converting the fraction of biological substance by suitable means to a material which efficiently produces charged ions in at least one of several possible ion sources without introduction of significant isotopic fractionation, and, g. measuring the radioisotope concentration in the material by means of direct isotopic counting. 5 figures.

  20. Frontiers in Biological Sciences Seminar Series Presents

    E-Print Network [OSTI]

    Rathbone, 509-371-6954 theresa.rathbone@pnl.gov Dr. Tim Donahue's research program studies solar energy use conducts basic, genomics-based research to design the microbial and plant systems needed to realize and other plant biomass into ethanol or other next- generation biofuels. #12;

  1. Emily Stuart Minor Department of Biological Sciences

    E-Print Network [OSTI]

    Minor, Emily

    Stakeholder Participation in Environmental Planning with Visualization Tools that Support Complex Systems (LASURI) $1500 (PI) #12;E. S. Minor Page 2 2008 ­ 11 To weed or not to weed? An economic decision support School Of The Environment, Duke University CURRENT FUNDING 2011 ­ 14 Effects of Urbanization

  2. Emily Stuart Minor Department of Biological Sciences

    E-Print Network [OSTI]

    Minor, Emily

    Stakeholder Participation in Environmental Planning with Visualization Tools that Support Complex Systems) $1500 (PI) #12;E. S. Minor Page 2 2008 ­ 11 To weed or not to weed? An economic decision support tool School Of The Environment, Duke University FUNDING 2011 ­ 14 Effects of Urbanization on Pollination

  3. Biological Control of Music Systems

    E-Print Network [OSTI]

    Miranda, Eduardo Reck

    ? Sonification for Auditory Display Some sort of compositional system Tenney's Meta-Hodos is current source Rock-Music #12;Music for Solo Performer Performed November 14, 1999 Used "Automates Ki" system February 2006 in TheUpgrade! Human multi-band EEG 8-channel sound reproduction Hybrid physical/source

  4. Quantum information science and complex quantum systems

    E-Print Network [OSTI]

    Michael A. Nielsen

    2002-10-01T23:59:59.000Z

    What makes quantum information science a science? This paper explores the idea that quantum information science may offer a powerful approach to the study of complex quantum systems.

  5. Contact | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    ivastava@science.doe.gov Mailing Address Office of Science Office of Biological and Environmental Research Biological Systems Science Division U.S. Department of Energy 1000...

  6. Systems Biology Group Decision Making

    E-Print Network [OSTI]

    entities (e.g., molecular, cellular, organism, ecological) #12;OHIO STATE T . H . E UNIVERSITY Systems/analysis of perception, attention, choice, learning, optimality,... #12;OHIO STATE T . H . E UNIVERSITY Group decision making, evolution and ecology Current work: Modeling/analysis of coordinated motion, foraging, choice

  7. Systems Modeling for Prognostic Cancer Biology

    E-Print Network [OSTI]

    Maccabe, Barney

    goal of this research is the development of personalized treatments in cancer, based on the genomic and treatment. A major challenge in contemporary cancer diagnosis and treatment is the development Systems Modeling for Prognostic Cancer Biology Xuefei Wang1 , BaiLian Li2 , Cheryl L. Willman

  8. Biological Computation as the Revolution of Complex Engineered Systems

    E-Print Network [OSTI]

    Gómez-Cruz, Nelson Alfonso

    2011-01-01T23:59:59.000Z

    Provided that there is no theoretical frame for complex engineered systems (CES) as yet, this paper claims that bio-inspired engineering can help provide such a frame. Within CES bio-inspired systems play a key role. The disclosure from bio-inspired systems and biological computation has not been sufficiently worked out, however. Biological computation is to be taken as the processing of information by living systems that is carried out in polynomial time, i.e., efficiently; such processing however is grasped by current science and research as an intractable problem (for instance, the protein folding problem). A remark is needed here: P versus NP problems should be well defined and delimited but biological computation problems are not. The shift from conventional engineering to bio-inspired engineering needs bring the subject (or problem) of computability to a new level. Within the frame of computation, so far, the prevailing paradigm is still the Turing-Church thesis. In other words, conventional engineering...

  9. KPFM and PFM of Biological Systems

    SciTech Connect (OSTI)

    Rodriguez, Brian [University College, Dublin; Kalinin, Sergei V [ORNL

    2011-01-01T23:59:59.000Z

    Surface potentials and electrostatic interactions in biological systems are a key element of cellular regulation and interaction. Examples include cardiac and muscular activity, voltage-gated ion channels, protein folding and assembly, and electroactive cells and electrotransduction. The coupling between electrical, mechanical, and chemical signals and responses in cellular systems necessitates the development of tools capable of measuring the distribution of charged species, surface potentials, and mechanical responses to applied electrical stimuli and vice versa, ultimately under physiological conditions. In this chapter, applications of voltage-modulated atomic force microscopy (AFM) methods including Kelvin probe force microscopy (KPFM) and piezoresponse force microscopy (PFM) to biological systems are discussed. KPFM is a force-sensitive non-contact or intermittent-contact mode AFM technique that allows electrostatic interactions and surface potentials to be addressed. Beyond long-range electrostatic interactions, the application of bias can lead to a mechanical response, e.g., due to linear piezoelectric coupling in polar biopolymers or via more complex electrotransduction and redox pathways in other biosystems. The use and development of PFM, based on direct electromechanical detection, to biological systems will also be addressed. The similarities and limitations of measuring surface potentials and electromechanical coupling in solution will be outlined.

  10. Systems biology: the `new biotechnology' Editorial overview

    E-Print Network [OSTI]

    for sustainable production of fuels, chemicals and pharmaceuticals and for the identification of novel biomarkers science research, as this approach to study living systems is applied for: firstly, developing novel cell factories that can be used for sustainable production of fuels, chemicals and materials; secondly, gaining

  11. Amanda Lynn Buchanan The Florida State University Department of Biological Science, Ecology and Evolution

    E-Print Network [OSTI]

    Ronquist, Fredrik

    Station, Portal, AZ 20034 Teacher, Biology/Integrated Science, South Ruimveldt Secondary School, Guyana. Forager variability and the evolution of plant allocation schedule, (in prep, intended for American

  12. Biological Sciences for the 21st Century: Meeting the Challenges of Sustainable Development in an Era of Global Change

    SciTech Connect (OSTI)

    Joel Cracraft; Richard O'Grady

    2007-05-12T23:59:59.000Z

    The symposium was held 10-12 May, 2007 at the Capitol Hilton Hotel in Washington, D. C. The 30 talks explored how some of today's key biological research developments (such as biocomplexity and complex systems analysis, bioinformatics and computational biology, the expansion of molecular and genomics research, and the emergence of other comprehensive or system wide analyses, such as proteomics) contribute to sustainability science. The symposium therefore emphasized the challenges facing agriculture, human health, sustainable energy, and the maintenance of ecosystems and their services, so as to provide a focus and a suite of examples of the enormous potential contributions arising from these new developments in the biological sciences. This symposium was the first to provide a venue for exploring how the ongoing advances in the biological sciences together with new approaches for improving knowledge integration and institutional science capacity address key global challenges to sustainability. The speakers presented new research findings, and identified new approaches and needs in biological research that can be expected to have substantial impacts on sustainability science.

  13. Early career scientists in chemical or materials sciences, physics, biology, psychology, applied maths, engineering: this is for you!

    E-Print Network [OSTI]

    in chemical or materials sciences, physics, biology, psychology, applied maths, engineering ­ anything science in chemical or materials sciences, physics, biology, psychology, applied maths, engineering: this is for youEarly career scientists in chemical or materials sciences, physics, biology, psychology, applied

  14. Minor in Agricultural Systems Management The Department of Biological and Agricultural Engineering

    E-Print Network [OSTI]

    Minor in Agricultural Systems Management Offered by The Department of Biological and Agricultural Engineering College of Agriculture and Life Sciences The minor in Agricultural Systems Management is available is to provide students, majoring in other fields, with a fundamental knowledge of the fields of agricultural

  15. Glenn A. Hyndes School of Biological and Environmental Sciences. Murdoch University

    E-Print Network [OSTI]

    . Western Australia 6150. Australia Ian C. Potter School of Biological and Environmental Sciences. Murdoch University Murdoch. Western Australia 6 J50. Australia Nell R. Loneragan School of Biological and Environmental Sciences. Murdoch University Murdoch. Western Australia 6 J50. Australia Present address: CSIRO

  16. Biological Systems for Hydrogen Photoproduction (Presentation)

    SciTech Connect (OSTI)

    Ghirardi, M. L.

    2012-05-01T23:59:59.000Z

    This presentation summarizes NREL biological systems for hydrogen photoproduction work for the DOE Hydrogen and Fuel Cells Program Annual Merit Review and Peer Evaluation Meeting, May 14-18, 2012. General goal is develop photobiological systems for large-scale, low cost and efficient H{sub 2} production from water (barriers AH, AI and AJ). Specific tasks are: (1) Address the O{sub 2} sensitivity of hydrogenases that prevent continuity of H{sub 2} photoproduction under aerobic, high solar-to-hydrogen (STH) light conversion efficiency conditions; and (2) Utilize a limited STH H{sub 2}-producing method (sulfur deprivation) as a platform to address or test other factors limiting commercial algal H{sub 2} photoproduction, including low rates due to biochemical and engineering mechanisms.

  17. APPLICATION FOR STEVENS SCHOLARSHIP Department of Biological Sciences

    E-Print Network [OSTI]

    Rock, Chris

    :_____ Total Credit Hours Completed: __________ Transferred Credit Hours: __________ Biology Quality Points University Course Prefix Course Number Semester Letter Grade Grade Points Biology Quality Points e.g. BIOL 1403 A 4 16 Summed Biology Quality Points: *Biology courses include all with the prefixes: BIOL, BOT

  18. Stochastic processes in biological systems : selected problems

    E-Print Network [OSTI]

    Artomov, Maksym

    2010-01-01T23:59:59.000Z

    Majority of biological processes can not be described deterministically. Multple levels of regulation contribute to the noise in the observable properties of the cells: fluctuations are ubiquitous in biological networks ...

  19. Computational biology: More than just a set of techniques The third Indo-French Bioinformatics meeting was held in the National Centre for Biological Sciences,

    E-Print Network [OSTI]

    Srinivasan, N.

    , such as "computational biology", "bioinformatics" and "in silico biology" are commonly used to refer to applicationsForeword Computational biology: More than just a set of techniques The third Indo-French Bioinformatics meeting was held in the National Centre for Biological Sciences, Bangalore, in June 2005

  20. Genomics and Systems Biology of Tuberculosis (2009 JGI User Meeting)

    ScienceCinema (OSTI)

    Galagan, James

    2011-04-25T23:59:59.000Z

    James Galagan from the Broad Institute spoke about the "Genomics and Systems Biology of TB" on March 26, 2009 during the 4th Annual User Meeting

  1. CSISSLCenter for Spatial Information Science and Systems

    E-Print Network [OSTI]

    Christian, Eric

    Page 1 CSISSLCenter for Spatial Information Science and Systems 03/19/2008 Survey of ISO Standards for Geospatial Metadata Liping Di ldi@gmu.edu Center for Spatial Information Science and Systems George Mason University #12;Page 2 CSISS Center for Spatial Information Science and Systems 03/19/2008 Introduction · ISO

  2. A Systems Approach to Service Science Research

    E-Print Network [OSTI]

    Glushko, Robert J.

    A Systems Approach to Service Science Research Service Science Faculty Workshop National Tsing Hua@ischool.berkeley.edu Plan for Today's Talk Motivating the Concept of "Service System" Making Sense of the Service System Concept Modeling Approaches for Service Systems "Point of View" in Service Systems Bridging the Front

  3. Why Are Computational Neuroscience and Systems Biology So Separate?

    E-Print Network [OSTI]

    De Schutter, Erik

    . Several examples are given, covering sociological, soft- ware technical, and methodological aspectsReview Why Are Computational Neuroscience and Systems Biology So Separate? Erik De Schutter1,2 * 1, there is surprisingly little interaction between the computational neuroscience and the systems biology research

  4. Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark

    E-Print Network [OSTI]

    Ussery, David W.

    Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark E. coli pangenomics - or - How to compare hundreds of E. coli genomes Fuzzy Dave Ussery Ullevĺl Universitetssykehus Oslo, Norway Wednesday, 10 December, 2008 #12;Comparative Microbial Genomics group Centerfor

  5. Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark

    E-Print Network [OSTI]

    Ussery, David W.

    Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark Burkholderia Pan-genomics Dave Ussery Max Planck Institut fur Terrestrial Microbiology Marburg, Germany 26 May, 2008 - or - What can we learn from more than 50 sequenced genomes? #12;Comparative Microbial Genomics

  6. Energy, information science, and systems science

    SciTech Connect (OSTI)

    Wallace, Terry C [Los Alamos National Laboratory; Mercer - Smith, Janet A [Los Alamos National Laboratory

    2011-02-01T23:59:59.000Z

    This presentation will discuss global trends in population, energy consumption, temperature changes, carbon dioxide emissions, and energy security programs at Los Alamos National Laboratory. LANL's capabilities support vital national security missions and plans for the future. LANL science supports the energy security focus areas of impacts of Energy Demand Growth, Sustainable Nuclear Energy, and Concepts and Materials for Clean Energy. The innovation pipeline at LANL spans discovery research through technology maturation and deployment. The Lab's climate science capabilities address major issues. Examples of modeling and simulation for the Coupled Ocean and Sea Ice Model (COSIM) and interactions of turbine wind blades and turbulence will be given.

  7. Biologic

    E-Print Network [OSTI]

    Louis H. Kauffman

    2002-04-03T23:59:59.000Z

    In this paper we explore the boundary between biology and the study of formal systems (logic). In the end, we arrive at a summary formalism, a chapter in "boundary mathematics" where there are not only containers but also extainers >protein folding and the basic structure of the Temperley Lieb algebra at the foundations of topological invariants of knots and links.

  8. Rogelio Omar Corona Nez M. Sc Biological Sciences

    E-Print Network [OSTI]

    Corona holds a Master degree in Environmental Sciences from Universidad Nacional Autónoma de México" ­ International Institute for Geo-Information Science and Earth Observation (ITC), Netherlands; June ­ July 2009

  9. Journal of Steroid Biochemistry & Molecular Biology 127 (2011) 915 Contents lists available at ScienceDirect

    E-Print Network [OSTI]

    Blumberg, Bruce

    -2300, United States b Department of Pharmaceutical Sciences, University of California, Irvine, CA, United energy balance to favor the storage of calories and by altering the hormonal control of appetite Biological Sciences 3, University of California, Irvine, CA 92697-2300, United States. Tel.: +1 949 824 8573

  10. MONOTONE INPUT/OUTPUT SYSTEMS, AND APPLICATIONS TO BIOLOGICAL SYSTEMS

    E-Print Network [OSTI]

    Enciso, Germán

    . iii #12;Preface: From Tycho Brahe To Microarrays How does mathematics fit into modern biology research

  11. Biological Development model for the Design of Robust Digital System

    E-Print Network [OSTI]

    Fernandez, Thomas

    Biological Development model for the Design of Robust Digital System Heng Liu Doctor of Philosophy and Keywords i Abstract This thesis presents a biologically-inspired developmental model for the design. The methods presented have been applied to produce a self-repairing two bit multiplier and an autonomous robot

  12. BIOLOGY INTERNATIONAL The Official Journal of the International Union of Biological Sciences

    E-Print Network [OSTI]

    Slik, Ferry

    , RMIT University School of Civil, Environmental and Chemical Engineering, Building 10, level 12, 376 of Environmental Biology University of Guelph, Guelph, ON N3C 2B7, Canada e-mail: pkevan@uoguelph.ca Nicholas 1TN, UK e-mail: nmt1@cam.ac.uk Ralf Reski, Head, Plant Biotechnology, Faculty of Biology, University

  13. UNIVERSITY OF CALIFORNIA, SANTA CRUZ DIVISION OF PHYSICAL & BIOLOGICAL SCIENCES,

    E-Print Network [OSTI]

    California at Santa Cruz, University of

    OF MARINE SCIENCES Postdoctoral Scholar The Institute of Marine Sciences at the University of California of Postdoctoral Scholar to conduct original research on climate change impacts on California's salmon to climate mediated habitat changes. The Postdoctoral Scholar will develop models, analyze results

  14. BIOLOGICAL SCIENCES Wendy O'Connor & Erin Sayer | Academic Advisers

    E-Print Network [OSTI]

    Logan, David

    award that is given by the American Society of Parasitologists. The Center for Biotechnology promotes research on all aspects of molecular life sciences research, leading to improvements in agriculture, health Bioenergy Facilities, and the Center for Plant Science Innovation. Great stories start HERE! "I love

  15. BIOLOGICAL SCIENCES Wendy O'Connor & Erin Sayer | Academic Advisers

    E-Print Network [OSTI]

    Logan, David

    of Parasitologists. The Center for Biotechnology promotes research on all aspects of molecular life sciences research, leading to improvements in agriculture, health care and the environment. Other labs and facilities include: Ecosystems Analysis Laboratory, Nebraska Bioenergy Facilities, and the Center for Plant Science Innovation

  16. The common ground of genomics and systems biology

    E-Print Network [OSTI]

    Conesa, Ana; Mortazavi, Ali

    2014-01-01T23:59:59.000Z

    8/S2. Authors’ details Genomics of Gene Expression Lab,systems biology. Annu Rev. Genomics Hum. Genet 2001, 2:343-projection strategies. Genomics 2008, 92(6):373-83. 31.

  17. The OME Framework for genome-scale systems biology

    SciTech Connect (OSTI)

    Palsson, Bernhard O.; Ebrahim, Ali; Federowicz, Steve

    2014-12-19T23:59:59.000Z

    The life sciences are undergoing continuous and accelerating integration with computational and engineering sciences. The biology that many in the field have been trained on may be hardly recognizable in ten to twenty years. One of the major drivers for this transformation is the blistering pace of advancements in DNA sequencing and synthesis. These advances have resulted in unprecedented amounts of new data, information, and knowledge. Many software tools have been developed to deal with aspects of this transformation and each is sorely needed [1-3]. However, few of these tools have been forced to deal with the full complexity of genome-scale models along with high throughput genome- scale data. This particular situation represents a unique challenge, as it is simultaneously necessary to deal with the vast breadth of genome-scale models and the dizzying depth of high-throughput datasets. It has been observed time and again that as the pace of data generation continues to accelerate, the pace of analysis significantly lags behind [4]. It is also evident that, given the plethora of databases and software efforts [5-12], it is still a significant challenge to work with genome-scale metabolic models, let alone next-generation whole cell models [13-15]. We work at the forefront of model creation and systems scale data generation [16-18]. The OME Framework was borne out of a practical need to enable genome-scale modeling and data analysis under a unified framework to drive the next generation of genome-scale biological models. Here we present the OME Framework. It exists as a set of Python classes. However, we want to emphasize the importance of the underlying design as an addition to the discussions on specifications of a digital cell. A great deal of work and valuable progress has been made by a number of communities [13, 19-24] towards interchange formats and implementations designed to achieve similar goals. While many software tools exist for handling genome-scale metabolic models or for genome-scale data analysis, no implementations exist that explicitly handle data and models concurrently. The OME Framework structures data in a connected loop with models and the components those models are composed of. This results in the first full, practical implementation of a framework that can enable genome-scale design-build-test. Over the coming years many more software packages will be developed and tools will necessarily change. However, we hope that the underlying designs shared here can help to inform the design of future software.

  18. November 2004 / Vol. 54 No. 11 BioScience 991 Atidal wave in the biological sciences, caused by

    E-Print Network [OSTI]

    Liu, Zhongchi

    , caused by the advent of genomic techniques and data, has begun to sweep across the fields of evolutionary of genome biology,or genomics, surged in the late 1980s under the impetus of the Human Genome Project and functional questions. The National Plant Genome Initiative, which brought genomics to the plant sciences

  19. Renewable Energy from Synthetic Biology (LBNL Science at the Theater)

    ScienceCinema (OSTI)

    Keasling, Jay

    2011-04-28T23:59:59.000Z

    Jay Keasling, co-leader of Berkeley Lab's Helios Project, is a groundbreaking researcher in the new scientific field of synthetic biology. In Helios, he directs the biology program, incorporating a range of approaches to increasing the efficacy and economy of plants and cellulose-degrading microbes to make solar-based fuels. He is a UC Berkeley professor of Chemical and Bioengineering, and founder of Amyris Biotechnologies, a company that was honored as a Technology Pioneer for 2006 by the World Economic Forum. Keasling has succeeded in using synthetic biology to develop a yeast-based production scheme for precursors of the antimalarial drug artemisinin in work funded by the Bill & Melinda Gates Foundation.

  20. Optimal control for biological movement systems

    E-Print Network [OSTI]

    Li, Weiwei

    2006-01-01T23:59:59.000Z

    Kalman. When is a linear control system optimal? Journal ofOptimal stationary control of linear systems with control-J. Mclane. Optimal stochastic control of linear systems with

  1. Preparing for Transfer Biological Engineering

    E-Print Network [OSTI]

    Walter, M.Todd

    Environmental Engineering Game Design Industrial Systems & Information Technology Information Science MaterialsPreparing for Transfer Majors: Biological Engineering Chemical Engineering Civil Engineering Computer Science Electrical & Computer Engineering Engineering Physics Environmental Engineering

  2. Systems Biology Knowledgebase (GSC8 Meeting)

    ScienceCinema (OSTI)

    Cottingham, Robert W [ORNL

    2011-04-29T23:59:59.000Z

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Robert W. Cottingham of Oak Ridge National Laboratory discusses the DOE KnowledgeBase at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

  3. Biological optimization systems for enhancing photosynthetic efficiency and methods of use

    DOE Patents [OSTI]

    Hunt, Ryan W; Chinnasamy, Senthil; Das, Keshav C; Rolim de Mattos, Erico

    2014-02-25T23:59:59.000Z

    The present disclosure relates to biological optimization systems for enhancing photosynthetic efficiency and methods of use.

  4. Physical, Chemical & Biological Processes of the Environment A Systems Approach to Solving Environmental Problems

    E-Print Network [OSTI]

    drilling for oil in the Great Lakes or Is fracking an environmental risk? 16 3 Biological sciences, pathogens, road salt or lead in drinking water. 22 17 Physical sciences: Water cycle and hydrology. 23 19

  5. Biology Chemistry & Material Science Laboratory 1 | Sample Preparation

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645 3,625govInstrumentstdmadapInactiveVisiting the TWP TWPAlumniComplexMaterialProductionBiological

  6. Biology Chemistry & Material Science Laboratory 2 | Sample Preparation

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645 3,625govInstrumentstdmadapInactiveVisiting the TWP TWPAlumniComplexMaterialProductionBiologicalLaboratories

  7. Final report for Conference Support Grant "From Computational Biophysics to Systems Biology - CBSB12"

    SciTech Connect (OSTI)

    Hansmann, Ulrich H.E.

    2012-07-02T23:59:59.000Z

    This report summarizes the outcome of the international workshop �From Computational Biophysics to Systems Biology (CBSB12)� which was held June 3-5, 2012, at the University of Tennessee Conference Center in Knoxville, TN, and supported by DOE through the Conference Support Grant 120174. The purpose of CBSB12 was to provide a forum for the interaction between a data-mining interested systems biology community and a simulation and first-principle oriented computational biophysics/biochemistry community. CBSB12 was the sixth in a series of workshops of the same name organized in recent years, and the second that has been held in the USA. As in previous years, it gave researchers from physics, biology, and computer science an opportunity to acquaint each other with current trends in computational biophysics and systems biology, to explore venues of cooperation, and to establish together a detailed understanding of cells at a molecular level. The conference grant of $10,000 was used to cover registration fees and provide travel fellowships to selected students and postdoctoral scientists. By educating graduate students and providing a forum for young scientists to perform research into the working of cells at a molecular level, the workshop adds to DOE's mission of paving the way to exploit the abilities of living systems to capture, store and utilize energy.

  8. Structural Biology | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level:Energy: Grid Integration Redefining What'sis Taking Over OurTheBrookhaven NationalRegionals » High School Rules, Forms,Science

  9. Review Article Aluminum-Induced Entropy in Biological Systems

    E-Print Network [OSTI]

    Seneff, Stephanie

    Review Article Aluminum-Induced Entropy in Biological Systems: Implications for Neurological years, mining, smelting, and refining of aluminum (Al) in various forms have increasingly exposed living of the Al toxicants to which we are being exposed. 1. Introduction Aluminum (Al) is the most common metal

  10. ENGINEERING GRaduatE PRoGRams Biological SyStemS engineering Biomedical engineering chemical engineering civil and environmental engineering

    E-Print Network [OSTI]

    California at Davis, University of

    ENGINEERING GRaduatE PRoGRams Biological SyStemS engineering § Biomedical engineering § chemical engineering § civil and environmental engineering computer Science § electrical and computer engineering § materialS Science and engineering mechanical and aeronautical engineering § tranSportation technology

  11. Curriculum Vitae of Paulien Hogeweg Theoretical Biology and Bioinformatics Group, Utrecht University

    E-Print Network [OSTI]

    Utrecht, Universiteit

    Curriculum Vitae of Paulien Hogeweg Theoretical Biology and Bioinformatics Group, Utrecht.g. genomic data), the dynamic modeling approaches referred to as "systems biology", "computational life sciences", "computational biology", and which partially overlaps with "complex systems research

  12. REQUIREMENTS Master's in Systems Science (MS SS)

    E-Print Network [OSTI]

    Suzuki, Masatsugu

    to Applied Probability and Statistics SSIE 506, Systems Problem Solving SSIE 520, Modeling and Simulation and ISE. FACULTY AND RESEARCH The SSIE department has secured more than $2.9 million in research funding-year strategy, has identified natural sciences, healthcare systems and smart energy as major areas of interest

  13. Molecular biology in marine science: Scientific questions, technological approaches, and practical implications

    SciTech Connect (OSTI)

    NONE

    1994-12-31T23:59:59.000Z

    This report describes molecular techniques that could be invaluable in addressing process-oriented problems in the ocean sciences that have perplexed oceanographers for decades, such as understanding the basis for biogeochemical processes, recruitment processes, upper-ocean dynamics, biological impacts of global warming, and ecological impacts of human activities. The coupling of highly sophisticated methods, such as satellite remote sensing, which permits synoptic monitoring of chemical, physical, and biological parameters over large areas, with the power of modern molecular tools for ``ground truthing`` at small scales could allow scientists to address questions about marine organisms and the ocean in which they live that could not be answered previously. Clearly, the marine sciences are on the threshold of an exciting new frontier of scientific discovery and economic opportunity.

  14. Title: From data analysis to network modeling, with applications in systems biology Author: Fabian J. Theis, Computational Modeling in Biology, Institute of Bioinformatics and

    E-Print Network [OSTI]

    Gerkmann, Ralf

    J. Theis, Computational Modeling in Biology, Institute of Bioinformatics and Systems BiologyTitle: From data analysis to network modeling, with applications in systems biology Author: Fabian at detailed models of the system of interest. Our application focus are biological networks, namely gene

  15. Computer Science Adjunct Faculty Position for Operating Systems

    E-Print Network [OSTI]

    Plotkin, Joshua B.

    Computer Science Adjunct Faculty Position for Operating Systems Connecticut College is seeking a visiting professor (rank open) of computer science to teach one section of Operating have a Masters or equivalent in Computer Science or related field. The catalog course

  16. REQUIREMENTS Master's in Systems Science (MS SS)

    E-Print Network [OSTI]

    Suzuki, Masatsugu

    , Introduction to Applied Probability and Statistics SSIE 506, Systems Problem Solving SSIE 520, Modeling AND RESEARCH Attracting over $2.5 million dollars in research funding per year, our established faculty works Citizenship, Rights and Cultural Belonging, Health Sciences, Material and Visual Worlds, Smart Energy

  17. Roadmap: Digital Sciences Digital Systems Analysis Bachelor of Science [DS-BS-DS-DSA

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Digital Sciences ­ Digital Systems Analysis ­ Bachelor of Science [DS-BS-DS-DSA] School of Digital Sciences Catalog Year: 2012-2013 Page 1 of 3 | Last Updated: 16-Apr-12/LNHD This roadmap (lower or upper division) 6 #12;Roadmap: Digital Sciences ­ Digital Systems Analysis ­ Bachelor

  18. Department of Information Systems College of Computing Sciences

    E-Print Network [OSTI]

    Bieber, Michael

    TM Department of Information Systems College of Computing Sciences The Bachelor of Science.njit.edu/admissions/undergraduate/applying/index.php WHAT DEGREE PROGRAMS ARE AVAILABLE? Students may choose a bachelor of science in information sys- tems in the computing sciences, consisting of advanced state-of-the-art courses in information systems, information

  19. Biological Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    domain of neurexin 1b: regulation of LNS domain function by alternative splicing G. Rudenko, T. Nguyen, Y. Chelliah, T.C. Sudhof, and J. Deisenhofer The three-dimensional...

  20. Strawberry DNA Extraction 2009 1 Minority Science Programs School of Biological Sciences University of California, Irvine

    E-Print Network [OSTI]

    Rose, Michael R.

    · Frozen strawberries, thawed overnight · 20 mL DNA extraction buffer (water, salt, and soap) in bag · IceStrawberry DNA Extraction 2009 1 Minority Science Programs ­ School regular household chemicals to extract DNA from strawberries and other fruits. Each chemical has

  1. Roadmap: Applied Engineering Manufacturing Systems Bachelor of Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Applied Engineering ­ Manufacturing Systems ­ Bachelor of Science [AT 15000 Introduction to Human Communication 3 Fulfills Kent Core Additional Kent Core Requirement 3 See #12;Roadmap: Applied Engineering ­ Manufacturing Systems ­ Bachelor of Science [AT

  2. Systems Engineering Integrating Project Management, Science, Engineering, and

    E-Print Network [OSTI]

    Mojzsis, Stephen J.

    Systems Engineering Integrating Project Management, Science, Engineering, and Mission Operations Systems Engineering Experience LASP is a full-cycle space institute, combining all aspects of space exploration through our expertise in science, engineering, mission operations, data analysis, and education

  3. Systems Engineering Integrating Project Management, Science, Engineering, and

    E-Print Network [OSTI]

    Mojzsis, Stephen J.

    Systems Engineering Integrating Project Management, Science, Engineering, and Mission Operations Systems Engineering Experience LASP is a full-cycle space research institute, combining all aspects of space exploration through our expertise in science, engineering, mission operations, data analysis

  4. In vivo robotics: the automation of neuroscience and other intact-system biological fields

    E-Print Network [OSTI]

    Forest, Craig R.

    Robotic and automation technologies have played a huge role in in vitro biological science, having proved critical for scientific endeavors such as genome sequencing and high-throughput screening. Robotic and automation ...

  5. Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645 3,625govInstrumentstdmadapInactiveVisiting the TWP TWPAlumniComplexMaterialProductionBiological andU.S.Biology

  6. The Departments of Biological Sciences and Geography jointly offer instruction leading to a post-diploma major in Environmental Science.This program is directed toward graduates of the Lethbridge Community

    E-Print Network [OSTI]

    Seldin, Jonathan P.

    -diploma major in Environmental Science.This program is directed toward graduates of the Lethbridge Community.Sc. in Environmental Science is designed to provide complementary training in both Biological Sciences and Geography College Natural Resources Technology Douglas College Associate in Science Degree (Environmental Science

  7. The Science Institutes at Yale's West Campus Energy Sciences Cancer Biology Chemical Biology Microbial Diversity Nanobiology Systems Biology

    E-Print Network [OSTI]

    production--for example, new biofuels and ecient solar technologies--and better ways to use existing fossil these areas will advance the Institute

  8. A Universal Automated Information System for Science and Technology

    E-Print Network [OSTI]

    Andrews, Peter B.

    A Universal Automated Information System for Science and Technology Peter B. Andrews Carnegie. It may be centuries before there is a well developed Universal Automated Information System for Science-based information sources which can be used as aids in answering questions from all realms of mathematics, science

  9. A Universal Automated Information System for Science and Technology

    E-Print Network [OSTI]

    Andrews, Peter B.

    A Universal Automated Information System for Science and Technology Peter B. Andrews Carnegie. It may be centuries before there is a well developed Universal Automated Information System for Science of mathematics, science, applied sci- ence, and technology. Just as those searching for information on the web

  10. March 2014 Most Viewed Documents for Biology And Medicine | OSTI...

    Office of Scientific and Technical Information (OSTI)

    March 2014 Most Viewed Documents for Biology And Medicine Science Subject Feed Carbon Dioxide Sequestering Using Microalgal Systems Daniel J. Stepan; Richard E. Shockey; Thomas A....

  11. Postdoctoral opportunities are available immediately in a project investigating molecular mechanisms of neurogenic hypertension. We take a systems biology

    E-Print Network [OSTI]

    Pillow, Jonathan

    mechanisms of neurogenic hypertension. We take a systems biology approach involving high-throughput data

  12. Montana State University 1 Environmental Sciences

    E-Print Network [OSTI]

    Maxwell, Bruce D.

    Montana State University 1 Environmental Sciences Note: MSU's programs in the biological. For additional options see Biological Sciences at MSU. Department of Land Resources & Environmental Sciences http and relationships in land and natural resources systems, combined with applications of environmental science

  13. Biochemistry & Molecular Biology Department of Environmental and Biomolecular Systems

    E-Print Network [OSTI]

    Chapman, Michael S.

    Biology _____ _____ _____ EBS 514 ­ Biochemistry III: Metabolism and Bioenergetics Biology _____ _____ _____ EBS 614 ­ Biochemistry III: Metabolism and Bioenergetics _____ _____ _____ Three (3) of the following courses are required: EBS 625 ­ Bioenergetics and Membrane Transport

  14. The Departments of Biological Sciences and Geography jointly offer instruction leading to a post-diploma major in Environmental Science for students who have completed the Diploma in Renewable Resource

    E-Print Network [OSTI]

    Seldin, Jonathan P.

    -diploma major in Environmental Science for students who have completed the Diploma in Renewable Resource) Renewable Resource Management Northern Alberta Institute of Technology (NAIT) Biological Sciences Technology (Renewable Resources Option) Nunavut Arctic College Environmental Technology Olds College Land Classification

  15. The Departments of Biological Sciences and Geography jointly offer instruction leading to a post-diploma major in Environmental Science for students who have completed the Diploma in Renewable Resource

    E-Print Network [OSTI]

    Seldin, Jonathan P.

    -diploma major in Environmental Science for students who have completed the Diploma in Renewable Resource) Renewable Resource Management Northern Alberta Institute of Technology (NAIT) Biological Sciences Technology (Renewable Resources Option) Nunavut Arctic College Environmental Technology Olds College Land and Water

  16. Biologically-based signal processing system applied to noise removal for signal extraction

    DOE Patents [OSTI]

    Fu, Chi Yung; Petrich, Loren I.

    2004-07-13T23:59:59.000Z

    The method and system described herein use a biologically-based signal processing system for noise removal for signal extraction. A wavelet transform may be used in conjunction with a neural network to imitate a biological system. The neural network may be trained using ideal data derived from physical principles or noiseless signals to determine to remove noise from the signal.

  17. Synthetic Biology and the U.S. Biotechnology Regulatory System: Challenges and Options

    SciTech Connect (OSTI)

    Carter, Sarah R. [J. Craig Venter Institute; Rodemeyer, Michael [University of Virginia; Garfinkel, Michele S. [EMBO; Friedman, Robert M [J. Craig Venter Institute

    2014-05-01T23:59:59.000Z

    Synthetic Biology and the U.S. Biotechnology Regulatory System: Challenges and Options Sarah R. Carter, Ph.D., J. Craig Venter Institute; Michael Rodemeyer, J.D., University of Virginia; Michele S. Garfinkel, Ph.D., EMBO; Robert M. Friedman, Ph.D., J. Craig Venter Institute In recent years, a range of genetic engineering techniques referred to as “synthetic biology” has significantly expanded the tool kit available to scientists and engineers, providing them with far greater capabilities to engineer organisms than previous techniques allowed. The field of synthetic biology includes the relatively new ability to synthesize long pieces of DNA from chemicals, as well as improved methods for genetic manipulation and design of genetic pathways to achieve more precise control of biological systems. These advances will help usher in a new generation of genetically engineered microbes, plants, and animals. The JCVI Policy Center team, along with researchers at the University of Virginia and EMBO, examined how well the current U.S. regulatory system for genetically engineered products will handle the near-term introduction of organisms engineered using synthetic biology. In particular, the focus was on those organisms intended to be used or grown directly in the environment, outside of a contained facility. The study concludes that the U.S. regulatory agencies have adequate legal authority to address most, but not all, potential environmental, health and safety concerns posed by these organisms. Such near-term products are likely to represent incremental changes rather than a marked departure from previous genetically engineered organisms. However, the study also identified two key challenges for the regulatory system, which are detailed in the report. First, USDA’s authority over genetically engineered plants depends on the use of an older engineering technique that is no longer necessary for many applications. The shift to synthetic biology and other newer genetic engineering techniques will leave many engineered plants without any pre-market regulatory review. Second, the number and diversity of engineered microbes for commercial use will increase in the near future, challenging EPA’s resources, expertise, and perhaps authority to regulate them. For each of these challenges, the report sets out a series of options, including an analysis of the advantages and disadvantages of each option from a variety of perspectives, for policy makers to consider. Policy responses will depend on the trade-offs chosen among competing considerations. This report, funded by the Department of Energy with additional funds from the Alfred P. Sloan Foundation, is the result of a two-year process that included interviews, commissioned background papers, discussions, and two workshops that sought input from a wide range of experts, including U.S. federal agency regulators, legal and science policy experts, representatives from the biotechnology indus¬try, and non-governmental organiza¬tions. This cross-section of views informed this report, but the conclusions are solely those of the authors. An Executive Summary, full Report, and background papers are available at: http://www.jcvi.org/cms/research/projects/synthetic-biology-and-the-us-biotechnology-regulatory-system/overview/

  18. Citizen Science System Assemblages: Understanding the Technologies that Support Crowdsourced Science

    E-Print Network [OSTI]

    Crowston, Kevin

    Citizen Science System Assemblages: Understanding the Technologies that Support Crowdsourced@syr.edu ABSTRACT We explore the nature of technologies to support citizen science, a method of inquiry citizen science platforms may be comprised of widely varying functionalities, yet still support relatively

  19. Between Service Science and Service-Oriented Software Systems Faculty of Computer Science

    E-Print Network [OSTI]

    Yan, Yuhong

    1 Between Service Science and Service-Oriented Software Systems Yuhong Yan Faculty of Computer. Introduction Service Science is promoted by many leading IT companies, such as IBM and SAP. These companies Science University of New Brunswick Canada Yuhong.yan@unb.ca Juergen Bode International School

  20. Selection of bioclimatically representative biological reserve systems under climate change

    E-Print Network [OSTI]

    Pyke, C R; Fischer, Douglas T

    2005-01-01T23:59:59.000Z

    of bioclimatically representative biological reserve systemsthat are bioclimatically representative across a range ofa ?at line (i.e. a representative sample of current climate

  1. Roadmap: Systems/Industrial Engineering Technology Associate of Applied Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Systems/Industrial Engineering Technology ­ Associate of Applied Science [RE Kent Core Summary below Semester Four: [17 Credit Hours] MERT 22009 Robotics and Flexible Automation 3

  2. Bioinformatics & Computational Biology

    E-Print Network [OSTI]

    Richner, Heinz

    Bioinformatics & Computational Biology Master of Science in Bioinformatics and Computational Biology (90 ECTS) Contact Information Programme administration Bioinformatics and Computational Biology.unifr.ch/msc Programme administration Bioinformatics and Computational Biology University of Bern Baltzerstrasse 6 CH

  3. Riparian forestry management and adult stream insects Hydrology and Earth System Sciences, 8(3), 545549 (2004) EGU

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Riparian forestry management and adult stream insects 545 Hydrology and Earth System Sciences, 8(3), 545549 (2004) © EGU Riparian forestry management and adult stream insects Robert A. Briers and John H The impacts of coniferous plantation forestry on the biology of upland streams in the UK are firmly

  4. MSU Departmental Assessment Plan Department: Plant Sciences and Plant Pathology

    E-Print Network [OSTI]

    Maxwell, Bruce D.

    Environmental Horticulture major Environmental Horticulture Science option Landscape Design option Biotechnology (Environmental Horticultural Science, Landscape Design, Plant Biology, Crop Science, and Biotechnology major Plant Biotechnology option Sustainable Food and Bioenergy Systems major Sustainable Crop

  5. www.scichina.com www.springerlink.com 2087 Chinese Science Bulletin 2006 Vol. 51 No. 17 2087--2094

    E-Print Network [OSTI]

    Lovley, Derek

    Physiology & Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai] . These genes play critical roles in the Nod-factor perception/transduction system a

  6. 6/06/09 BS in Biology, Concentration in Microbiology Bachelor of Science in Biology: Concentration in Microbiology

    E-Print Network [OSTI]

    been hired as quality control microbiologists or as research technicians and associates in hospitals Biometry 4 Total lower-division requirements 35-36 Upper-Division Requirements (33 units) BIO 355 Genetics 11 Total upper-division requirements 33 Total for major 68-69 The Department of Biology

  7. Updated May 2014 Systems Science & Engineering Sample Curriculum

    E-Print Network [OSTI]

    Subramanian, Venkat

    Mathematics B ESE 319 3 Probability and Statistics for Engineering ESE 326 3 Signals and Systems ESE 351 3Updated May 2014 Systems Science & Engineering Sample Curriculum In selecting elective courses Science & Engineering ESE 251 3 Matrix Algebra MATH 309 3 Engineering Mathematics A ESE 318 3 Engineering

  8. A Platform-Based Design Environment for Synthetic Biological Systems

    E-Print Network [OSTI]

    Densmore, Douglas

    in drug pro- duction, biofuels, and drug delivery vessels. In an attempt to standardize this process, and the notion of both "top down" and "bottom up" design styles. 1.1 Requirements In the world of biology one can

  9. Enabling a Systems Biology Knowledgebase with Gaggle and Firegoose

    SciTech Connect (OSTI)

    Baliga, Nitin S. [Institute for Systems Biology

    2014-12-12T23:59:59.000Z

    The overall goal of this project was to extend the existing Gaggle and Firegoose systems to develop an open-source technology that runs over the web and links desktop applications with many databases and software applications. This technology would enable researchers to incorporate workflows for data analysis that can be executed from this interface to other online applications. The four specific aims were to (1) provide one-click mapping of genes, proteins, and complexes across databases and species; (2) enable multiple simultaneous workflows; (3) expand sophisticated data analysis for online resources; and enhance open-source development of the Gaggle-Firegoose infrastructure. Gaggle is an open-source Java software system that integrates existing bioinformatics programs and data sources into a user-friendly, extensible environment to allow interactive exploration, visualization, and analysis of systems biology data. Firegoose is an extension to the Mozilla Firefox web browser that enables data transfer between websites and desktop tools including Gaggle. In the last phase of this funding period, we have made substantial progress on development and application of the Gaggle integration framework. We implemented the workspace to the Network Portal. Users can capture data from Firegoose and save them to the workspace. Users can create workflows to start multiple software components programmatically and pass data between them. Results of analysis can be saved to the cloud so that they can be easily restored on any machine. We also developed the Gaggle Chrome Goose, a plugin for the Google Chrome browser in tandem with an opencpu server in the Amazon EC2 cloud. This allows users to interactively perform data analysis on a single web page using the R packages deployed on the opencpu server. The cloud-based framework facilitates collaboration between researchers from multiple organizations. We have made a number of enhancements to the cmonkey2 application to enable and improve the integration within different environments, and we have created a new tools pipeline for generating EGRIN2 models in a largely automated way.

  10. Current Status and Recommendations for the Future of Research, Teaching, and Testing in the Biological Sciences of Radiation Oncology: Report of the American Society for Radiation Oncology Cancer Biology/Radiation Biology Task Force, Executive Summary

    SciTech Connect (OSTI)

    Wallner, Paul E., E-mail: pwallner@theabr.org [21st Century Oncology, LLC, and the American Board of Radiology, Bethesda, Maryland (United States); Anscher, Mitchell S. [Department of Radiation Oncology, Virginia Commonwealth University, Richmond, Virginia (United States); Barker, Christopher A. [Department of Radiation Oncology, Memorial Sloan-Kettering Cancer Center, New York, New York (United States); Bassetti, Michael [Department of Human Oncology, University of Wisconsin Carbone Cancer Center, Madison, Wisconsin (United States); Bristow, Robert G. [Departments of Radiation Oncology and Medical Biophysics, Princess Margaret Cancer Center/University of Toronto, Toronto, Ontario (Canada); Cha, Yong I. [Department of Radiation Oncology, Norton Cancer Center, Louisville, Kentucky (United States); Dicker, Adam P. [Department of Radiation Oncology, Thomas Jefferson University, Philadelphia, Pennsylvania (United States); Formenti, Silvia C. [Department of Radiation Oncology, New York University, New York, New York (United States); Graves, Edward E. [Departments of Radiation Oncology and Radiology, Stanford University, Stanford, California (United States); Hahn, Stephen M. [Department of Radiation Oncology, University of Pennsylvania (United States); Hei, Tom K. [Center for Radiation Research, Columbia University, New York, New York (United States); Kimmelman, Alec C. [Department of Radiation Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts (United States); Kirsch, David G. [Department of Radiation Oncology, Duke University, Durham, North Carolina (United States); Kozak, Kevin R. [Department of Human Oncology, University of Wisconsin (United States); Lawrence, Theodore S. [Department of Radiation Oncology, University of Michigan (United States); Marples, Brian [Department of Radiation Oncology, Oakland University, Oakland, California (United States); and others

    2014-01-01T23:59:59.000Z

    In early 2011, a dialogue was initiated within the Board of Directors (BOD) of the American Society for Radiation Oncology (ASTRO) regarding the future of the basic sciences of the specialty, primarily focused on the current state and potential future direction of basic research within radiation oncology. After consideration of the complexity of the issues involved and the precise nature of the undertaking, in August 2011, the BOD empanelled a Cancer Biology/Radiation Biology Task Force (TF). The TF was charged with developing an accurate snapshot of the current state of basic (preclinical) research in radiation oncology from the perspective of relevance to the modern clinical practice of radiation oncology as well as the education of our trainees and attending physicians in the biological sciences. The TF was further charged with making suggestions as to critical areas of biological basic research investigation that might be most likely to maintain and build further the scientific foundation and vitality of radiation oncology as an independent and vibrant medical specialty. It was not within the scope of service of the TF to consider the quality of ongoing research efforts within the broader radiation oncology space, to presume to consider their future potential, or to discourage in any way the investigators committed to areas of interest other than those targeted. The TF charge specifically precluded consideration of research issues related to technology, physics, or clinical investigations. This document represents an Executive Summary of the Task Force report.

  11. Modeling the segment polarity gene network First: System is biologically defined; known expression patterns

    E-Print Network [OSTI]

    Albert, Réka

    are assumed to be not expressed. · Generate a set of kinetic parameters from the biologically relevant rangeModeling the segment polarity gene network First: System is biologically defined; known expression Boolean model: mRNA and protein activity is switch-like Validation: reproduces known gene expression

  12. Modeling complex biological flows in multi-scale systems using the APDEC framework

    E-Print Network [OSTI]

    Modeling complex biological flows in multi-scale systems using the APDEC framework David Trebotich methods are based on higher-order finite difference methods in complex geometry with adaptivity-mail: trebotich1@llnl.gov Abstract. We have developed advanced numerical algorithms to model biological fluids

  13. Incorporating Optics into a Coupled Physical-Biological Forecasting System in the Monterey Bay

    E-Print Network [OSTI]

    Boss, Emmanuel S.

    Incorporating Optics into a Coupled Physical-Biological Forecasting System in the Monterey Bay Fei://www.marine.maine.edu/~eboss/index.html http://ourocean.jpl.nasa.gov/ LONG-TERM GOALS Modeling and predicting ocean optical properties for coastal waters requires linking optical properties with the physical, chemical, and biological processes

  14. Dissolved metal contamination in the East RiverLong Island sound system: potential biological effects

    E-Print Network [OSTI]

    Johnsen, Sönke

    in the United States. The ER­WLIS region receives treated sewage from 18 wastewater treatment plants in New YorkDissolved metal contamination in the East River­Long Island sound system: potential biological sewage, and to assess its possible biological impact on local waters. The East River­Long Island Sound

  15. Computational and Systems Biology DOI: 10.1039/b921381n

    E-Print Network [OSTI]

    Babu, M. Madan

    in an exciting time in biology where the availability of such data permits us to investigate funda- mental. This diversity in problems that one can currently address is well illustrated by the articles published this data, (c) develop mathematical models of biological systems with predictive power and (d) uncover

  16. Job Title:Biological Science Laboratory Technican Department:Department Of Agriculture

    E-Print Network [OSTI]

    , solutions and culture media. Maintains records of reagents, chemical stocks and protocols. Disposes of biological waste materials. Prepares written reports describing the experimental results and assists involves regular and recurring moderate risks with hazardous biological substances or discomforts which

  17. CB26CH23-Ideker ARI 26 June 2010 20:15 A Decade of Systems Biology

    E-Print Network [OSTI]

    advances in soft- ware tools that allow biologists to explore system-wide models and to formulate newCB26CH23-Ideker ARI 26 June 2010 20:15 R E V I E W S IN A D V A N CE A Decade of Systems Biology) Abstract Systems biology provides a framework for assembling models of biolog- ical pathways from

  18. New Approaches to Improved Animal Health: Systems Biology and Modeling of Real Interactions of Pathogens and their Hosts

    E-Print Network [OSTI]

    decade or sousing comprehensive systems biology approaches linking genomics, proteomics, bioinformatics of computational systems biology analysis of host:pathogen interactions (the interactome) as a tool for enhanced are using computational systems biology methods to create interactome models of the actual host responses

  19. The Bioinformatics & Systems Biology group (http://bioinformatics.psb.ugent.be/) at the VIB Department of Plant

    E-Print Network [OSTI]

    Gent, Universiteit

    The Bioinformatics & Systems Biology group (http://bioinformatics.psb.ugent.be/) at the VIB in the computational systems biology research group, you will be responsible for the commercialization of our software and food companies to present our in-house systems biology software tools. Profile: · PhD in computational

  20. Hemodynamically Driven Vein Graft Remodeling: A Systems Biology Approach

    E-Print Network [OSTI]

    Garbey, Marc

    no influence on the clinical outcomes following vein graft implantation. Analysis of the decision points vascular biology literature into the clinical care of patients. Recent failures in the Corgentech in an animal vein graft model, human phase I and II clinical studies were initiated.1-3 Demonstrating safety

  1. Quantum information science as an approach to complex quantum systems

    E-Print Network [OSTI]

    Michael A. Nielsen

    2002-08-13T23:59:59.000Z

    What makes quantum information science a science? These notes explore the idea that quantum information science may offer a powerful approach to the study of complex quantum systems. We discuss how to quantify complexity in quantum systems, and argue that there are two qualitatively different types of complex quantum system. We also explore ways of understanding complex quantum dynamics by quantifying the strength of a quantum dynamical operation as a physical resource. This is the text for a talk at the ``Sixth International Conference on Quantum Communication, Measurement and Computing'', held at MIT, July 2002. Viewgraphs for the talk may be found at http://www.qinfo.org/talks/.

  2. Building the DOE Systems Biology Knowledgebase (KBase) ( 7th Annual SFAF Meeting, 2012)

    ScienceCinema (OSTI)

    Brettin, Tom [Oak Ridge National Laboratory

    2013-03-22T23:59:59.000Z

    Tom Brettin on "Building the DOE Systems Biology Knowledgebase (KBase)" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

  3. Cancer Systems Biology Dana Faratian, James L. Bown, V. Anne Smith, Simon P. Langdon,

    E-Print Network [OSTI]

    Smith, V Anne

    245 Chapter 12 Cancer Systems Biology Dana Faratian, James L. Bown, V. Anne Smith, Simon P. Langdon+Business Media, LLC 2010 #12;246 Faratian et al. While cancer can arise from any cell in the body, the commonest

  4. Techniques for Probing the Processes by Which Microwaves Interact with Chemical and Biological Systems 

    E-Print Network [OSTI]

    Kay, Philip E

    2007-01-01T23:59:59.000Z

    Microwave heating is a relatively mature field and is theoretically well understood. However, recently there has been debate as to whether microwaves can interact with chemical and biological systems by means other than ...

  5. DOE Systems Biology Knowledgebase (KBASE) (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Arkin, Adam [LBNL] [LBNL

    2012-03-21T23:59:59.000Z

    Adam Arkin from Berkeley Lab on the DOE Systems Biology Knowledgebase (KBASE) at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

  6. A PLL-Based Frequency Shift Measurement System for Chemical and Biological Sensing 

    E-Print Network [OSTI]

    Torke, William

    2012-02-14T23:59:59.000Z

    A PLL-based frequency shift measurement system for chemical and biological sensing was developed and implemented in the form of two discrete electronic assemblies. One of the assemblies consists of a VCO which contains a ...

  7. DOE Systems Biology Knowledgebase (KBASE) (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Arkin, Adam [LBNL

    2013-01-15T23:59:59.000Z

    Adam Arkin from Berkeley Lab on the DOE Systems Biology Knowledgebase (KBASE) at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

  8. Community Page A Holistic Approach to Marine Eco-Systems Biology

    E-Print Network [OSTI]

    Sullivan, Matthew B.

    Community Page A Holistic Approach to Marine Eco-Systems Biology Eric Karsenti1 *, Silvia G. Acinas-year study of the global ocean ecosystem aboard the ship Tara. A unique sampling programme encompass

  9. Institute for Engineering and Systems Sciences

    E-Print Network [OSTI]

    Canet, LĂ©onie

    Sciences #12;A policy of international cooperation The Institute is engaged in intense international many different forms, ranging from the simple exchange of researchers to International Joint Units joint publications in prestigious scientific journals, the setting up of scientific platforms

  10. Journal of Computer and System Sciences 77 (2011) 10711078 Contents lists available at ScienceDirect

    E-Print Network [OSTI]

    Fomin, Fedor V.

    2011-01-01T23:59:59.000Z

    in tournaments Stéphane Bessy c , Fedor V. Fomin a , Serge Gaspers b , Christophe Paul c , Anthony Perez c. Bessy et al. / Journal of Computer and System Sciences 77 (2011) 1071­1078 aggregation is the number

  11. Earth Sciences Division Division Director

    E-Print Network [OSTI]

    Berkeley Nanogeoscience Center Center for Computational Geoscience Center for Environmental Biotechnology Systems Burton M. (Mack) Kennedy Nuclear Energy & Waste Jens Birkholzer Environmental & Biological Systems Science Susan S. Hubbard Janet Jansson Environmental Remediation & Water Resources Kenneth Hurst Williams

  12. Development of New Soft Ionization Mass Spectrometry Approaches for Spatial Imaging of Complex Chemical and Biological Systems

    E-Print Network [OSTI]

    Development of New Soft Ionization Mass Spectrometry Approaches for Spatial Imaging of Complex Chemical and Biological Systems Research Team: Julia Laskin, Ljiljana Pasa-Toli, Brandi Heath, Ingela to multiple chemical and biological systems Key Successes Developed unique tools for imaging biological

  13. The Bioinformatics & Systems Biology group (http://bioinformatics.psb.ugent.be/) at the VIB Department of Plant

    E-Print Network [OSTI]

    Gent, Universiteit

    The Bioinformatics & Systems Biology group (http://bioinformatics.psb.ugent.be/) at the VIB Administrator/Bioinformatician As a member of VIB's a new bioinformatics project framed in the computational Department of Plant Systems Biology studies the structure, function and evolution of biological networks

  14. Gender Equity By The Numbers: Status of Women in Biological & Physical Sciences at the University of

    E-Print Network [OSTI]

    Sheridan, Jennifer

    , the Women in Science & Engineering Leadership Institute (WISELI) became one of the first nine sites of "science and engineering", even if the ADVANCE: IT site is not focusing on the social sciences. Finally (NSF). Any site that receives an ADVANCE: IT award is required to submit certain data to NSF annually

  15. 7.91J / 7.36J / 20.490J Foundations of Computational and Systems Biology, Spring 2004

    E-Print Network [OSTI]

    Burge, Christopher

    Serving as an introduction to computational biology, this course emphasizes the fundamentals of nucleic acid and protein sequence analysis, structural analysis, and the analysis of complex biological systems. The principles ...

  16. Graduate School of Fundamental Science and Engineering Department of Electronic and Photonic Systems

    E-Print Network [OSTI]

    Kaji, Hajime

    Graduate School of Fundamental Science and Engineering Department of Electronic and Photonic of Fundamental Science and Engineering Department of Electronic and Photonic Systems Research Area Research of Fundamental Science and Engineering Department of Electronic and Photonic Systems Master's Program Doctoral

  17. Method And System For Examining Biological Materials Using Low Power Cw Excitation Raman Spectroscopy.

    DOE Patents [OSTI]

    Alfano, Robert R. (Bronx, NY); Wang, Wubao (Flushing, NY)

    2003-05-06T23:59:59.000Z

    A method and system for examining biological materials using low-power cw excitation Raman spectroscopy. A low-power continuous wave (cw) pump laser beam and a low-power cw Stokes (or anti-Stokes) probe laser beam simultaneously illuminate a biological material and traverse the biological material in collinearity. The pump beam, whose frequency is varied, is used to induce Raman emission from the biological material. The intensity of the probe beam, whose frequency is kept constant, is monitored as it leaves the biological material. When the difference between the pump and probe excitation frequencies is equal to a Raman vibrational mode frequency of the biological material, the weak probe signal becomes amplified by one or more orders of magnitude (typically up to about 10.sup.4 -10.sup.6) due to the Raman emission from the pump beam. In this manner, by monitoring the intensity of the probe beam emitted from the biological material as the pump beam is varied in frequency, one can obtain an excitation Raman spectrum for the biological material tested. The present invention may be applied to in the in vivo and/or in vitro diagnosis of diabetes, heart disease, hepatitis, cancers and other diseases by measuring the characteristic excitation Raman lines of blood glucose, cholesterol, serum glutamic oxalacetic transaminase (SGOT)/serum glutamic pyruvic transaminase (SGPT), tissues and other corresponding Raman-active body constituents, respectively.

  18. Bioimaging Technology Homepage | U.S. DOE Office of Science ...

    Office of Science (SC) Website

    molecular-scale information to whole-cell, systems-level understanding. Department of Energy (DOE) Office of Science's Office of Biological and Environmental Research (BER)...

  19. Nuclear Systems Modeling & Simulation | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Systems Modeling and Simulation SHARE Nuclear Systems Modeling and Simulation Reactor physics depletion model for the Advanced Test Reactor Reactor physics depletion model for the...

  20. Biological Statistics and Computational Biology Seminar Series

    E-Print Network [OSTI]

    Keinan, Alon

    Science and the Center for Computational Biology and Bioinformatics at Columbia University. Dr. PeBiological Statistics and Computational Biology Seminar Series Dr. Itsik Pe'er Associate Professor of Computer Science Columbia University Itsik Pe'er is an associate professor in the Department of Computer

  1. Dynamic Processes in Biology, Chemistry, and Materials Science: Opportunities for UltraFast Transmission Electron Microscopy - Workshop Summary Report

    SciTech Connect (OSTI)

    Kabius, Bernd C.; Browning, Nigel D.; Thevuthasan, Suntharampillai; Diehl, Barbara L.; Stach, Eric A.

    2012-07-25T23:59:59.000Z

    This report summarizes a 2011 workshop that addressed the potential role of rapid, time-resolved electron microscopy measurements in accelerating the solution of important scientific and technical problems. A series of U.S. Department of Energy (DOE) and National Academy of Science workshops have highlighted the critical role advanced research tools play in addressing scientific challenges relevant to biology, sustainable energy, and technologies that will fuel economic development without degrading our environment. Among the specific capability needs for advancing science and technology are tools that extract more detailed information in realistic environments (in situ or operando) at extreme conditions (pressure and temperature) and as a function of time (dynamic and time-dependent). One of the DOE workshops, Future Science Needs and Opportunities for Electron Scattering: Next Generation Instrumentation and Beyond, specifically addressed the importance of electron-based characterization methods for a wide range of energy-relevant Grand Scientific Challenges. Boosted by the electron optical advancement in the last decade, a diversity of in situ capabilities already is available in many laboratories. The obvious remaining major capability gap in electron microscopy is in the ability to make these direct in situ observations over a broad spectrum of fast (µs) to ultrafast (picosecond [ps] and faster) temporal regimes. In an effort to address current capability gaps, EMSL, the Environmental Molecular Sciences Laboratory, organized an Ultrafast Electron Microscopy Workshop, held June 14-15, 2011, with the primary goal to identify the scientific needs that could be met by creating a facility capable of a strongly improved time resolution with integrated in situ capabilities. The workshop brought together more than 40 leading scientists involved in applying and/or advancing electron microscopy to address important scientific problems of relevance to DOE’s research mission. This workshop built on previous workshops and included three breakout sessions identifying scientific challenges in biology, biogeochemistry, catalysis, and materials science frontier areas of fundamental science that underpin energy and environmental science that would significantly benefit from ultrafast transmission electron microscopy (UTEM). In addition, the current status of time-resolved electron microscopy was examined, and the technologies that will enable future advances in spatio-temporal resolution were identified in a fourth breakout session.

  2. Thermodynamics for Systems Biology Peter Salamon, Anna Salamon, and Andrzej Konopka

    E-Print Network [OSTI]

    Salamon, Peter

    1 Thermodynamics for Systems Biology Peter Salamon, Anna Salamon, and Andrzej Konopka Department to thermodynamics designed specifically for the needs of the systems biologist. It departs from modern treatments of the subject that have to do with modeling, i.e. to communicate thermodynamics as a body of worldviews, methods

  3. Exploring the free-energy landscapes of biological systems with steered molecular dynamics

    E-Print Network [OSTI]

    Chen, Liao Y.

    1 Exploring the free-energy landscapes of biological systems with steered molecular dynamics fluctuation-dissipation-theorem (BD -FDT) to accurately compute the free-energy profiles for several compute the free-energy profiles for all the afore-listed systems that represent various important aspects

  4. OPTIONS POLITIQUES anada's Science, Technology and Innovation System

    E-Print Network [OSTI]

    Volesky, Bohumil

    OPTIONS POLITIQUES JUIN 2009 8 C anada's Science, Technology and Innovation System: State, Technology and Innovation Council (STIC) presented its State of the Nation 2008 report. It presents an overview of Canada's sci- ence, technology and innovation system, charts our progress over time

  5. ScienceTreks: an Autonomous Digital Library System

    E-Print Network [OSTI]

    Marchese, Maurizio

    ScienceTreks: an Autonomous Digital Library System Alexander Ivanyukovich1 , Maurizio Marchese1 of semantic- aware services in the digital library domain. In this paper we first present and discuss. The proposed Autonomous Digital Library system can be used in automating end-to- end information retrieval

  6. FACULTY OF SCIENCE Energy and Environmental Systems (EES) Specialization

    E-Print Network [OSTI]

    de Leon, Alex R.

    will cover various areas where we fail to adequately manage our investments in and use of the power systemFACULTY OF SCIENCE Energy and Environmental Systems (EES) Specialization Seminar Series SUMMARY All and the Nordic countries and has published papers on all these regions. He is a member of the Editorial Advisory

  7. Bridging the gap between systems biology and medicine

    E-Print Network [OSTI]

    2009-01-01T23:59:59.000Z

    Progress in developing meaningful ontologies for systems medicinemedicine, facilitated by enhanced visibility in the more clinically oriented medical literature, will be essential to chart effort and progress.

  8. Quantitative Languages for Complex Systems Applied to Biological Structure

    E-Print Network [OSTI]

    representations of the system. We illustrate the development of such languages using the structure of Drosophila this problem as well as to promote the study of complex systems as a systematic discipline, we seek to develop, life cycle stages, mutant abnormalities, gene expression patterns, genetic interactions, etc. In order

  9. IntegromeDB: an integrated system and biological search engine

    E-Print Network [OSTI]

    Baitaluk, Michael; Kozhenkov, Sergey; Dubinina, Yulia; Ponomarenko, Julia

    2012-01-01T23:59:59.000Z

    Wright A: Searching the Deep Web. CACM 2008, 51(10):14-15.a semantic, graph based, ‘deep web’ data integration systemIntegromeDB to tap into the Deep Web, the portion of the web

  10. Nonlinear stochastic system identification techniques for biological tissues/

    E-Print Network [OSTI]

    Chen, Yi, S.M. Massachusetts Institute of Technology

    2010-01-01T23:59:59.000Z

    This research develops a device capable of measuring the nonlinear dynamic mechanical properties of human tissue in vivo. The enabling technology is the use of nonlinear stochastic system identification techniques in ...

  11. System for monitoring an industrial or biological process

    DOE Patents [OSTI]

    Gross, Kenneth C. (Argonne, IL); Wegerich, Stephan W. (Argonne, IL); Vilim, Rick B. (Argonne, IL); White, Andrew M. (Skokie, IL)

    1998-01-01T23:59:59.000Z

    A method and apparatus for monitoring and responding to conditions of an industrial process. Industrial process signals, such as repetitive manufacturing, testing and operational machine signals, are generated by a system. Sensor signals characteristic of the process are generated over a time length and compared to reference signals over the time length. The industrial signals are adjusted over the time length relative to the reference signals, the phase shift of the industrial signals is optimized to the reference signals and the resulting signals output for analysis by systems such as SPRT.

  12. Biological Interactions and Dynamics Workshop | EMSL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Biological Interactions and Dynamics Workshop Biological Interactions and Dynamics Workshop Wiley HS, Kaplan S. 2011. "Biological Interactions and Dynamics Science Theme Advisory...

  13. "Creating computational models of biological systems to better combat

    E-Print Network [OSTI]

    Acton, Scott

    that could be used for biofuel and other metabolic engineering applications. · Performed high of Microbial Pathogens Infectious disease is the leading cause of death worldwide. While genomics has had system in biofuel and nutraceutical production. With the aid of computational techniques, we can predict

  14. Optimiziing the laboratory monitoring of biological wastewater-purification systems

    SciTech Connect (OSTI)

    S.V. Gerasimov [OAO Koks, Kemerovo (Russian Federation)

    2009-05-15T23:59:59.000Z

    Optimization of the laboratory monitoring of biochemical wastewater-treatment systems at coke plants is considered, for the example of OAO Koks. By adopting a methodological approach to determine the necessary data from chemical analysis, it is possible to reduce the time, labor, and materials required for monitoring, without impairing the purification process or compromising the plant's environmental policies.

  15. The Biology of . . . Batteries -news education science magazines tech... http://www.discover.com/issues/jan-04/departments/biology-of-batteries/ 1 of 2 11/14/2005 2:45 PM

    E-Print Network [OSTI]

    Lovley, Derek

    The Biology of . . . Batteries - news education science magazines tech... http source of electrical power--humans. The machines "grow" people in vast industrial farms and siphon off the small current of electricity generated by the bodies. You, me--we are battery. Thankfully, civilization

  16. Specific Cation Effects in Biological Systems: Thermodynamic and Spectroscopic Insights

    E-Print Network [OSTI]

    Kherb, Jaibir

    2012-02-14T23:59:59.000Z

    and energy of the generated beam was 50 mJ/pulse. The fundamental 1064 laser beam was then sent to an optical parametric generator/amplifier (OPG/OPA) stage system ((LaserVision, Bellevue, WA).46 Firstly, the horizontally polarized 1064 nm beam....8 Schematic diagram showing the principle of vibrational sum frequency spectroscopy (VSFS). a) Temporal and spatial overlapping of input infrared and visible beams at the sample surface to generate the sum frequency...

  17. Method And System For Examining Biological Materials Using Low Power Cw Excitation Raman Spectroscopy.

    DOE Patents [OSTI]

    Alfano, Robert R. (Bronx, NY); Wang, Wubao (Flushing, NY)

    2000-11-21T23:59:59.000Z

    A method and system for examining biological materials using low-power cw excitation Raman spectroscopy. In accordance with the teachings of the invention, a low-power continuous wave (cw) pump laser beam and a low-power cw Stokes (or anti-Stokes) probe laser beam simultaneously illuminate a biological material and traverse the biological material in collinearity. The pump beam, whose frequency is varied, is used to induce Raman emission from the biological material. The intensity of the probe beam, whose frequency is kept constant, is monitored as it leaves the biological material. When the difference between the pump and probe excitation frequencies is equal to a Raman vibrational mode frequency of the biological material, the weak probe signal becomes amplified by one or more orders of magnitude (typically up to about 10.sup.4 -10.sup.6) due to the Raman emission from the pump beam. In this manner, by monitoring the intensity of the probe beam emitted from the biological material as the pump beam is varied in frequency, one can obtain an excitation Raman spectrum for the biological material tested. The present invention may be applied to in the in vivo and/or in vitro diagnosis of diabetes, heart disease, hepatitis, cancers and other diseases by measuring the characteristic excitation Raman lines of blood glucose, cholesterol, serum glutamic oxalacetic transaminase (SGOT)/serum glutamic pyruvic tansaminase (SGPT), tissues and other corresponding Raman-active body constituents, respectively. For example, it may also be used to diagnose diseases associated with the concentration of Raman-active constituents in urine, lymph and saliva It may be used to identify cancer in the breast, cervix, uterus, ovaries and the like by measuring the fingerprint excitation Raman spectra of these tissues. It may also be used to reveal the growing of tumors or cancers by measuring the levels of nitric oxide in tissue.

  18. Theoretical Population Biology 74 (2008) 233250 Contents lists available at ScienceDirect

    E-Print Network [OSTI]

    Taylor, Jay

    reserved. 1. Introduction The impact of environmental variation on genetic polymor- phism has beenDirect Theoretical Population Biology journal homepage: www.elsevier.com/locate/tpb Environmental variation, University of Oxford, Oxford OX1 3TG, United Kingdom a r t i c l e i n f o Article history: Received 27

  19. Dynamics of a Multilocus Trait Center for the Study of Evolution, School of Biological Sciences,

    E-Print Network [OSTI]

    Waxman, David

    Dynamics of a Multilocus Trait D. WAXMAN Center for the Study of Evolution, School of Biological: 6 May 2000) A detailed theoretical study of the dynamical behaviour of a quantitative trait under the explicit dynamics. Numerical tests of dynamical results over 104 generations and equilibrium results

  20. Roadmap: Environmental and Conservation Biology Environmental Policy and Management Bachelor of Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Environmental and Conservation Biology ­ Environmental Policy and Management ­ Bachelor Environmental Policy and Management Concentration Electives 4 See note 3 on page 2 Semester Seven: [15 Elective 3-4 See note 2 on page 2 Environmental Policy and Management Concentration Electives (at least 1

  1. Roadmap: Environmental and Conservation Biology Environmental Policy and Management Bachelor of Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Environmental and Conservation Biology ­ Environmental Policy and Management ­ Bachelor Elective 3 See note 1 on page 2 Kent Core Requirement 3 See Kent Core Summary below Environmental Policy Environmental Policy and Management Concentration Electives (at least 1 credit hour must be upper division) 6

  2. Science of Earth Systems Offered by the Department of Earth and Atmospheric Sciences

    E-Print Network [OSTI]

    Lipson, Michal

    , dwindling energy resources, inadequate water supplies, and political strife over strategic minerals Systems graduates will be able to seek careers dealing with energy, mineral and water resources, natural of the earth sciences has never been more critical to society than it is today. Global climate change

  3. Acoustic and biological studies of pitched blade mixing systems

    E-Print Network [OSTI]

    Hsi, Randolph Paul

    1986-01-01T23:59:59.000Z

    , and fermentation time and their efl'ect on cell growth; and the effectiveness of mixing conditions to be determined by the degree of balance between efficient mass transfer and low shear rates. DEDICATION This thesis is dedicated to Mindy Hsi whose untimely... in this work; Dr. Mike Midler for providing the chemicals used for medium; Dr. Dan Taylor for allowing the use of the Microgen fermenter and supporting systems; and Dr. Albert Watson l'or allowing use of the Carl Zeiss binocular microscope for bacterial cell...

  4. Published in IET Systems Biology Received on 2nd February 2009

    E-Print Network [OSTI]

    Schaffer, David V.

    .1049/iet-syb.2009.0011 ISSN 1751-8849 Systems biology approaches to understanding stem cell fate choice J. Peltier1 D.V. Schaffer2 1 Department of Chemical Engineering, University of California, 176 Stanley Hall-3220, USA E-mail: schaffer@berkeley.edu Abstract: Stem cells have the capability to self-renew and maintain

  5. DEPARTMENT OF CELL AND SYSTEMS BIOLOGY GRADUATE AWARDS 2010 Valerie Anderson Award

    E-Print Network [OSTI]

    Toronto, University of

    Andrew McKinley and Arash Tadjalli 2008 Norman Lee 2007 Starlee Lively 2006 Anna Price #12;Hilbert & Chung Huoi Ung 2007 Amy Lee 2006 Marion Andrew #12;Duncan L. Gellatly Memorial Fellowship To be awarded Andrew Catalano 2006 Shelley Lumba Senior Alumni Association Prize in Cell & Systems Biology

  6. 8 Prospects for Biological Carbon Sinks in Greenhouse Gas Emissions Trading Systems

    E-Print Network [OSTI]

    8 Prospects for Biological Carbon Sinks in Greenhouse Gas Emissions Trading Systems John Reilly1. With emissions trading, emitters who found they could cheaply reduce their emissions might have allowances- ing Australia, Canada, Japan and Russia. This group also pushed strongly for inter- national emissions

  7. Theory: Biological systems organize to maximize entropy production subject to information and biophysicochemical constraints.

    E-Print Network [OSTI]

    Vallino, Joseph J.

    Theory: Biological systems organize to maximize entropy production subject to information the fitness landscape is as dynamic as the organisms themselves. The theory of MEP under biophysicochemical, 2005b) presented a provisional proof on the theory of maximum entropy production (MEP), which posits

  8. Toward Systems Biology in Brown Algae to Explore Acclimation and Adaptation to the Shore Environment

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Toward Systems Biology in Brown Algae to Explore Acclimation and Adaptation to the Shore,2 Catherine Boyen,1,2 and Anne Siegel4,5 Abstract Brown algae belong to a phylogenetic lineage distantly siliculosus as a model organism for brown algae has represented a framework in which several omics techniques

  9. Minor in Science of Natural and Environmental Systems DESCRIPTION OF THE MINOR

    E-Print Network [OSTI]

    Chen, Tsuhan

    Minor in Science of Natural and Environmental Systems DESCRIPTION OF THE MINOR The Minor Program of Agriculture and Life Sciences Science of Natural and Environmental Systems Admission to Minor Program of Study* ______ ___________ NtRes 2201: Society and Natural Resources* ______ ___________ SNES 2000: Environmental Sciences

  10. OFFICE OF BIOLOGICAL AND ENVIRONMENTAL RESEARCH Climate and Environmental Sciences Division

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level:Energy: Grid Integration Redefining What's Possible for Renewable Energy:Nanowire3627 FederalTransformers | Department ofBIOLOGICAL AND

  11. Nuclear Systems Technology | Nuclear Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level:Energy: Grid Integration Redefining What's Possible for Renewable Energy:Nanowire3627 Federal Register /76SafeguardsSystems Modeling Advanced

  12. EMSL Research and Capability Development Proposals Development of Live and LC-NMR Microbial Metabolomics Methods for Systems Biology Studies

    E-Print Network [OSTI]

    Metabolomics Methods for Systems Biology Studies: A Test Case Relevant to Biofuels Production Project start for enhanced systems biology studies. There are two specific objectives: 1) develop and cross-validate unique analysis, and 2) apply this improved metabolomics capability to study microbial processes relevant

  13. EDITOR OF CONFERENCE PROCEEDINGS: 17. Health Monitoring of Structural and Biological Systems 2011 , Ed. T. Kundu, Pub.

    E-Print Network [OSTI]

    Wong, Pak Kin

    EDITOR OF CONFERENCE PROCEEDINGS: 17. Health Monitoring of Structural and Biological Systems 2011/NDE, March 7-10, 2011, San Diego, California, Vol. 7984, 2011 16. Health Monitoring of Structural 9780819475558, 2009. 14. Health Monitoring of Structural and Biological Systems 2008 , Ed. T. Kundu, Pub. SPIE

  14. Structure and Dynamics of Biological Systems Research Team: James E. Evans, Daniel E. Perea, Xiao-Ying Yu, Zihua Zhu

    E-Print Network [OSTI]

    Structure and Dynamics of Biological Systems Research Team: James E. Evans, Daniel E. Perea, Xiao for atomic resolution structure determination; observe dynamics using a pump-probe regime. Dynamic TEM probe tomography to interrogate the structure and dynamics of biological systems

  15. Interaction of biological systems with static and ELF electric and magnetic fields

    SciTech Connect (OSTI)

    Anderson, L.E.; Kelman, B.J.; Weigel, R.J. (eds.)

    1987-01-01T23:59:59.000Z

    Although background levels of atmospheric electric and geomagnetic field levels are extremely low, over the past several decades, human beings and other life forms on this planet have been subjected to a dramatically changing electromagnetic milieu. An exponential increase in exposure to electromagnetic fields has occurred, largely because of such technological advances as the growth of electrical power generation and transmission systems, the increased use of wireless communications, and the use of radar. In addition, electromagnetic field generating devices have proliferated in industrial plants, office buildings, homes, public transportation systems, and elsewhere. Although significant increases have occurred in electromagnetic field strenghths spanning all frequency ranges, this symposium addresses only the impact of these fields at static and extremely low frequencies (ELF), primarily 50 and 60 Hz. This volume contains the proceedings of the symposium entitled /open quotes/Interaction of biological systems with static and ELF electric and magnetic fields/close quotes/. The purpose of the symposium was to provide a forum for discussions of all aspects of research on the interaction of static and ELF electromagnetic fields with biological systems. These systems include simple biophysical models, cell and organ preparations, whole animals, and man. Dosimetry, exposure system design, and artifacts in ELF bioeffects research were also addressed, along with current investigations that examine fundamental mechanisms of interactions between the fields and biological processes. Papers are indexed separately.

  16. 2010 Atmospheric System Research (ASR) Science Team Meeting Summary

    SciTech Connect (OSTI)

    Dupont, DL

    2011-05-04T23:59:59.000Z

    This document contains the summaries of papers presented in poster format at the March 2010 Atmospheric System Research Science Team Meeting held in Bethesda, Maryland. More than 260 posters were presented during the Science Team Meeting. Posters were sorted into the following subject areas: aerosol-cloud-radiation interactions, aerosol properties, atmospheric state and surface, cloud properties, field campaigns, infrastructure and outreach, instruments, modeling, and radiation. To put these posters in context, the status of ASR at the time of the meeting is provided here.

  17. Postharvest Biology and Technology 58 (2010) 157165 Contents lists available at ScienceDirect

    E-Print Network [OSTI]

    Hsiang, Tom

    2010-01-01T23:59:59.000Z

    Province, Huazhong Agricultural University, Wuhan, Hubei 430070, China b Department of Biotechnology, Guangxi Agricultural Vocation-Technical College, Nanning, Guangxi, 530007, China c School of Environmental Sciences, University of Guelph, Guelph, ON, N1G 2W1, Canada a r t i c l e i n f o Article history: Received

  18. 10/10/2014 Better smelling beer, thanks to fruit flies | Science/AAAS | News http://news.sciencemag.org/biology/2014/10/better-smelling-beer-thanks-fruit-flies 1/5

    E-Print Network [OSTI]

    10/10/2014 Better smelling beer, thanks to fruit flies | Science/AAAS | News http://news.sciencemag.org/biology/2014/10/better-smelling-beer-thanks-fruit-flies 1/5 #12;10/10/2014 Better smelling beer, thanks to fruit flies | Science/AAAS | News http://news.sciencemag.org/biology/2014/10/better-smelling-beer

  19. Nanoscale Electromechanics of Ferroelectric and Biological Systems: A New Dimension in Scanning Probe Microscopy

    SciTech Connect (OSTI)

    Kalinin, Sergei V [ORNL; Rodriguez, Brian J [ORNL; Jesse, Stephen [ORNL; Karapetian, Edgar [ORNL; Mirman, B [Suffolk University, Boston; Eliseev, E. A. [National Academy of Science of Ukraine, Kiev, Ukraine; Morozovska, A. N. [National Academy of Science of Ukraine, Kiev, Ukraine

    2007-01-01T23:59:59.000Z

    Functionality of biological and inorganic systems ranging from nonvolatile computer memories and microelectromechanical systems to electromotor proteins and cellular membranes is ultimately based on the intricate coupling between electrical and mechanical phenomena. In the past decade, piezoresponse force microscopy (PFM) has been established as a powerful tool for nanoscale imaging, spectroscopy, and manipulation of ferroelectric and piezoelectric materials. Here, we give an overview of the fundamental image formation mechanism in PFM and summarize recent theoretical and technological advances. In particular, we show that the signal formation in PFM is complementary to that in the scanning tunneling microscopy (STM) and atomic force microscopy (AFM) techniques, and we discuss the implications. We also consider the prospect of extending PFM beyond ferroelectric characterization for quantitative probing of electromechanical behavior in molecular and biological systems and high-resolution probing of static and dynamic polarization switching processes in low-dimensional ferroelectric materials and heterostructures.

  20. NSF Students Gain Hands-on Experience in Neutron Sciences at...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    at Oak Ridge National Laboratory in April for an intensive course in how to apply neutron scattering to their studies of materials science and biological systems. The...

  1. Graduate School of Creative Science and Engineering Department of Industrial and Management Systems Engineering

    E-Print Network [OSTI]

    Kaji, Hajime

    Graduate School of Creative Science and Engineering Department of Industrial and Management and Engineering Department of Industrial and Management Systems Engineering Research Instruction Application; Graduate School of Creative Science and Engineering Department of Industrial and Management Systems

  2. 2008 PUBLICATIONS: Biological Sciences Aleman L, Kitamura J, Abdel-Mageed H, Lee J, Sun Y, Nakajima M, Ueguchi-Tanaka

    E-Print Network [OSTI]

    Rock, Chris

    2008 PUBLICATIONS: Biological Sciences Aleman L, Kitamura J, Abdel-Mageed H, Lee J, Sun Y, Nakajima and K.L. Griffin. 2008. Sapwood temperature gradients between lower stems and the crown do not influence, and Nevin D. Durish. Re-evaluation of the geographic distribution and phylogeography of the Sigmodon

  3. Mongolian Journal of Biological Sciences 2009 Vol. 7(1-2): 45-50 Fences Impede Long-distance Mongolian Gazelle (Procapra gutturosa)

    E-Print Network [OSTI]

    Schweik, Charles M.

    485, Ulaanbaatar 211238, Mongolia 5 Institute of Biology, Mongolian Academy of Sciences, Ulaanbaatar 51, Mongolia; Current address: WWF Mongolia, P. O. Box 115, Ulaanbaatar 210620A, Mongolia 6 co (Procapra gutturosa) became entangled in border fences as thousands attempted to move from Mongolia

  4. Information Systems and Decision Sciences Five-Year Strategic Plan for National Prominence

    E-Print Network [OSTI]

    1 Information Systems and Decision Sciences Five-Year Strategic Plan for National Prominence 2010 to the advancement of knowledge in information systems and decision sciences; Delivering high quality degree programs that produce graduates who will excel in in information systems and decision sciences; Providing

  5. Figure 1. Hydrologic Information System Overarching Vision. Data Interoperability in the Hydrologic Sciences

    E-Print Network [OSTI]

    Tarboton, David

    Sciences The CUAHSI Hydrologic Information System David G Tarboton1 , David Maidment2 , Ilya Zaslavsky3 Sciences. Hydrologic Information Systems (HIS) are part of this infrastructure. Hydrologic information--Hydrologic Information System; Web services; Data Model; Hydrology I. INTRODUCTION The advancement of hydrologic science

  6. Citizen science in archaeology

    E-Print Network [OSTI]

    Smith, ML

    2014-01-01T23:59:59.000Z

    Melinda A. Zeder Smith] CITIZEN SCIENCE IN ARCHAEOLOGY 2014and Application of Citizen Science. Biological ConservationHilchey 2011 A Review of Citizen Science and Community-Based

  7. Nuclear Systems Modeling & Simulation | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level:Energy: Grid Integration Redefining What's Possible for Renewable Energy:Nanowire3627 Federal Register /76Safeguards andSciencesSystems

  8. Environmental Biology | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    microbiology, biogeochemistry, molecular biology, molecular dynamics, bioinformatics, genomics, neutron science, chemistry, and computing-and spans multiple scales, from the...

  9. Combined process for 2,4-Dichlorophenoxyacetic acid treatment Coupling of an electrochemical system with a biological treatment.

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    system with a biological treatment. Jean-Marie Fontmorina,b *, Florence Fourcadea,b Florence Genestec-made electrochemical flow cell was used for the pre-treatment and a biological treatment was then carried out using activated sludge supplied by a local wastewater treatment plant. 2,4-D was used as a target compound

  10. Development and Applications Of Photosensitive Device Systems To Studies Of Biological And Organic Materials

    SciTech Connect (OSTI)

    Gruner, Sol

    2012-01-20T23:59:59.000Z

    The primary focus of the grant is the development of new x-ray detectors for biological and materials work at synchrotron sources, especially Pixel Array Detectors (PADs), and the training of students via research applications to problems in biophysics and materials science using novel x-ray methods. This Final Progress Report provides a high-level overview of the most important accomplishments. These major areas of accomplishment include: (1) Development and application of x-ray Pixel Array Detectors; (2) Development and application of methods of high pressure x-ray crystallography as applied to proteins; (3) Studies on the synthesis and structure of novel mesophase materials derived from block co-polymers.

  11. Biological optimization systems for enhancing photosynthetic efficiency and methods of use

    DOE Patents [OSTI]

    Hunt, Ryan W.; Chinnasamy, Senthil; Das, Keshav C.; de Mattos, Erico Rolim

    2012-11-06T23:59:59.000Z

    Biological optimization systems for enhancing photosynthetic efficiency and methods of use. Specifically, methods for enhancing photosynthetic efficiency including applying pulsed light to a photosynthetic organism, using a chlorophyll fluorescence feedback control system to determine one or more photosynthetic efficiency parameters, and adjusting one or more of the photosynthetic efficiency parameters to drive the photosynthesis by the delivery of an amount of light to optimize light absorption of the photosynthetic organism while providing enough dark time between light pulses to prevent oversaturation of the chlorophyll reaction centers are disclosed.

  12. Walker Institute Research Day, Thursday 15th July 2010 Harborne LT, Biological Sciences

    E-Print Network [OSTI]

    Lucarini, Valerio

    systems Renewable energy Ground source heat pumps Phil Coker Anne Verhoef School CME School HES 14 APD School BS School APD Health Health and climate change Simon Gosling School MMP Power generation/energy

  13. Open Faculty Position in Radiation Cancer Biology Environmental and Radiological Health Sciences

    E-Print Network [OSTI]

    Stephens, Graeme L.

    system with many bike and walking trails. Money Magazine ranked Fort Collins first in "Best Places, veteran status, genetic information, sexual orientation, or gender identity or expression. Colorado State

  14. The Departments of Biological Sciences and Geography jointly offer instruction leading to a post-diploma major in Environmental Science for students who have completed the Diploma in

    E-Print Network [OSTI]

    Seldin, Jonathan P.

    in Science Degree (Environmental Science) Lakeland College Environmental Conservation and Reclamation and Reclamation Soil and Water Conservation Selkirk College Integrated Environmental Planning Technology- diploma major in Environmental Science for students who have completed the Diploma in Renewable Resource

  15. Bringing science into river systems cumulative effects assessment practice

    SciTech Connect (OSTI)

    Seitz, Nicole E. [Centre for Hydrology, Department of Geography and Planning, University of Saskatchewan. 117 Science Place, Saskatoon, SK. S7N 5C8 (Canada); Westbrook, Cherie J., E-mail: cherie.westbrook@usask.c [Centre for Hydrology, Department of Geography and Planning, University of Saskatchewan. 117 Science Place, Saskatoon, SK. S7N 5C8 (Canada); Noble, Bram F. [Department of Geography and Planning, School for the Environment and Sustainability, University of Saskatchewan. 117 Science Place, Saskatoon, SK. S7N 5C8 (Canada)

    2011-04-15T23:59:59.000Z

    Fast-paced watershed change, driven by anthropogenic development, is threatening the sustainability of freshwater resources across the globe. Developments within watersheds interact in a manner that is additive and synergistic over space and time. Such cumulative environmental effects are defined as the results of actions that are individually minor but collectively significant when added to other past, present, and reasonably foreseeable future actions. Cumulative effects assessment (CEA) then is broadly defined as the process of evaluating the potential impacts of such collective actions on the environment and is a requirement in many countries, including in Canada at the federal level under the Canadian Environmental Assessment Act. However, current approaches to CEA for river systems are proving to be ineffective, which is largely attributed to the disconnect between CEA science and practice. We highlight this gap herein by discussing contradictions in the CEA literature, challenges in quantifying cumulative interactions, including overcoming spatiotemporal scale issues, multiple hydrologic and ecological pathways, and lack of predictive analysis. Our analysis shows there is a need for improved CEA for river systems, and in responding to this need we propose a conceptual framework for better integrating science and practice for improved CEA for river systems using one of the most adversely affected rivers basins in Canada, the Athabasca River, as our model. We conclude by addressing the challenges inherent to CEA with the intent of providing scientists with ways to help improve CEA of river systems.

  16. Experimental proposal for testing the Emergence of Environment Induced (EIN) Classical Selection rules with Biological Systems

    E-Print Network [OSTI]

    Thomas Durt

    2010-03-14T23:59:59.000Z

    According to the so-called Quantum Darwinist approach, the emergence of "classical islands" from a quantum background is assumed to obey a (selection) principle of maximal information. We illustrate this idea by considering the coupling of two oscillators (modes). As our approach suggests that the classical limit could have emerged throughout a long and progressive Evolution mechanism, it is likely that primitive living organisms behave in a "more quantum", "less classical" way than more evolved ones. This brings us to seriously consider the possibility to measure departures from classicality exhibited by biological systems. We describe an experimental proposal the aimed at revealing the presence of entanglement in the biophotonic radiation emitted by biological sources.

  17. A Study to Determine the Biological Feasibility of a New Fish Tagging System; Annual Report 1994-1996.

    SciTech Connect (OSTI)

    Downing, Sandra L.; Frost, Deborah A.; Jonasson, Bruce F.; Nunnallee, Edmund P.; Peterson, Bradley W.; Prentice, Earl F.; Snell, Glen A.

    1998-11-01T23:59:59.000Z

    A multiyear program to evaluate the technical and biological feasibility of a new identification system for salmonids established between the Bonneville Power Administration (BPA) and the National Marine Fisheries Service (NMFS) in 1983.

  18. BIOPHYSICSBIOPHYSICSBIOPHYSICS This major provides a solid foundation in both the biological sciences and the

    E-Print Network [OSTI]

    Krylov, Anna I.

    Admissions dos and don'ts. Study Abroad: Learn about trends in research and discovery around the world by spending a semester or year in Europe, Africa, Australia, or South America. Women in Physics: WIP: Neurobiology -- Structure, function, and development of nervous systems; neural integration and mechanisms

  19. Complex Systems Science for Subsurface Fate and Transport Report from the August 2009 Workshop

    SciTech Connect (OSTI)

    None

    2010-03-01T23:59:59.000Z

    The subsurface environment, which encompasses the vadose and saturated zones, is a heterogeneous, geologically complex domain. Believed to contain a large percentage of Earth's biomass in the form of microorganisms, the subsurface is a dynamic zone where important biogeochemical cycles work to sustain life. Actively linked to the atmosphere and biosphere through the hydrologic and carbon cycles, the subsurface serves as a storage location for much of Earth's fresh water. Coupled hydrological, microbiological, and geochemical processes occurring within the subsurface environment cause the local and regional natural chemical fluxes that govern water quality. These processes play a vital role in the formation of soil, economically important fossil fuels, mineral deposits, and other natural resources. Cleaning up Department of Energy (DOE) lands impacted by legacy wastes and using the subsurface for carbon sequestration or nuclear waste isolation require a firm understanding of these processes and the documented means to characterize the vertical and spatial distribution of subsurface properties directing water, nutrient, and contaminant flows. This information, along with credible, predictive models that integrate hydrological, microbiological, and geochemical knowledge over a range of scales, is needed to forecast the sustainability of subsurface water systems and to devise ways to manage and manipulate dynamic in situ processes for beneficial outcomes. Predictive models provide the context for knowledge integration. They are the primary tools for forecasting the evolving geochemistry or microbial ecology of groundwater under various scenarios and for assessing and optimizing the potential effectiveness of proposed approaches to carbon sequestration, waste isolation, or environmental remediation. An iterative approach of modeling and experimentation can reveal powerful insights into the behavior of subsurface systems. State-of-science understanding codified in models can provide a basis for testing hypotheses, guiding experiment design, integrating scientific knowledge on multiple environmental systems into a common framework, and translating this information to support informed decision making and policies. Subsurface behavior typically has been investigated using reductionist, or bottom-up approaches. In these approaches, mechanisms of small-scale processes are quantified, and key aspects of their behaviors are moved up to the prediction scale using scaling laws and models. Reductionism has and will continue to yield essential and comprehensive understanding of the molecular and microscopic underpinnings of component processes. However, system-scale predictions cannot always be made with bottom-up approaches because the behaviors of subsurface environments often simply do not result from the sum of smaller-scale process interactions. Systems exhibiting such behavior are termed complex and can range from the molecular to field scale in size. Complex systems contain many interactive parts and display collective behavior including emergence, feedback, and adaptive mechanisms. Microorganisms - key moderators of subsurface chemical processes - further challenge system understanding and prediction because they are adaptive life forms existing in an environment difficult to observe and measure. A new scientific approach termed complex systems science has evolved from the critical need to understand and model these systems, whose distinguishing features increasingly are found to be common in the natural world. In contrast to reductionist approaches, complexity methods often use a top-down approach to identify key interactions controlling diagnostic variables at the prediction scale; general macroscopic laws controlling system-scale behavior; and essential, simplified models of subsystem interactions that enable prediction. This approach is analogous to systems biology, which emphasizes the tight coupling between experimentation and modeling and is defined, in the context of Biological Systems Science research programs under DOE'

  20. Meteorological Integration for the Biological Warning and Incident Characterization (BWIC) System: General Guidance for BWIC Cities

    SciTech Connect (OSTI)

    Shaw, William J.; Wang, Weiguo; Rutz, Frederick C.; Chapman, Elaine G.; Rishel, Jeremy P.; Xie, YuLong; Seiple, Timothy E.; Allwine, K Jerry

    2007-02-16T23:59:59.000Z

    The U.S. Department of Homeland Security (DHS) is responsible for developing systems to detect the release of aerosolized bioagents in urban environments. The system that accomplishes this, known as BioWatch, is a robust first-generation monitoring system. In conjunction with the BioWatch detection network, DHS has also developed a software tool for cities to use to assist in their response when a bioagent is detected. This tool, the Biological Warning and Incident Characterization (BWIC) System, will eventually be deployed to all BioWatch cities to aid in the interpretation of the public health significance of indicators from the BioWatch networks. BWIC consists of a set of integrated modules, including meteorological models, that estimate the effect of a biological agent on a city’s population once it has been detected. For the meteorological models in BWIC to successfully calculate the distribution of biological material, they must have as input accurate meteorological data, and wind fields in particular. The purpose of this document is to provide guidance for cities to use in identifying sources of good-quality local meteorological data that BWIC needs to function properly. This process of finding sources of local meteorological data, evaluating the data quality and gaps in coverage, and getting the data into BWIC, referred to as meteorological integration, is described. The good news for many cities is that meteorological measurement networks are becoming increasingly common. Most of these networks allow their data to be distributed in real time via the internet. Thus, cities will often only need to evaluate the quality of available measurements and perhaps add a modest number of stations where coverage is poor.

  1. Indoor Air Nuclear, Biological, and Chemical Health Modeling and Assessment System

    SciTech Connect (OSTI)

    Stenner, Robert D.; Hadley, Donald L.; Armstrong, Peter R.; Buck, John W.; Hoopes, Bonnie L.; Janus, Michael C.

    2001-03-01T23:59:59.000Z

    Indoor air quality effects on human health are of increasing concern to public health agencies and building owners. The prevention and treatment of 'sick building' syndrome and the spread of air-borne diseases in hospitals, for example, are well known priorities. However, increasing attention is being directed to the vulnerability of our public buildings/places, public security and national defense facilities to terrorist attack or the accidental release of air-borne biological pathogens, harmful chemicals, or radioactive contaminants. The Indoor Air Nuclear, Biological, and Chemical Health Modeling and Assessment System (IA-NBC-HMAS) was developed to serve as a health impact analysis tool for use in addressing these concerns. The overall goal was to develop a user-friendly fully functional prototype Health Modeling and Assessment system, which will operate under the PNNL FRAMES system for ease of use and to maximize its integration with other modeling and assessment capabilities accessible within the FRAMES system (e.g., ambient air fate and transport models, water borne fate and transport models, Physiologically Based Pharmacokinetic models, etc.). The prototype IA-NBC-HMAS is designed to serve as a functional Health Modeling and Assessment system that can be easily tailored to meet specific building analysis needs of a customer. The prototype system was developed and tested using an actual building (i.e., the Churchville Building located at the Aberdeen Proving Ground) and release scenario (i.e., the release and measurement of tracer materials within the building) to ensure realism and practicality in the design and development of the prototype system. A user-friendly "demo" accompanies this report to allow the reader the opportunity for a "hands on" review of the prototype system's capability.

  2. The Departments of Biological Sciences and Geography jointly offer instruction leading to a post-diploma major in Environmental Science for students who have completed the Diploma in

    E-Print Network [OSTI]

    Seldin, Jonathan P.

    - diploma major in Environmental Science for students who have completed the Diploma in Renewable Resource diploma program.The curriculum for the post-diploma B.Sc. in Environmental Science is designed to provide College Natural Resources Technology Douglas College Associate in Science Degree (Environmental Science

  3. Department of Computer & Information Sciences University of Delaware 302-831-2712 www.cis.udel.edu information systems

    E-Print Network [OSTI]

    Firestone, Jeremy

    Department of Computer & Information Sciences · University of Delaware · 302-831-2712 · www Sciences offers students a Bachelor of Science major in Information Systems (INSY-BS), which combines science. #12;SpringFall Information Systems Curriculum Department of Computer & Information Sciences

  4. Information Surfaces in Systems Biology and Applications to Engineering Sustainable Agriculture

    E-Print Network [OSTI]

    Dashti, Hesam; Driver, James; Assadi, Amir

    2011-01-01T23:59:59.000Z

    Systems biology of plants offers myriad opportunities and many challenges in modeling. A number of technical challenges stem from paucity of computational methods for discovery of the most fundamental properties of complex dynamical systems. In systems engineering, eigen-mode analysis have proved to be a powerful approach. Following this philosophy, we introduce a new theory that has the benefits of eigen-mode analysis, while it allows investigation of complex dynamics prior to estimation of optimal scales and resolutions. Information Surfaces organizes the many intricate relationships among "eigen-modes" of gene networks at multiple scales and via an adaptable multi-resolution analytic approach that permits discovery of the appropriate scale and resolution for discovery of functions of genes in the model plant Arabidopsis. Applications are many, and some pertain developments of crops that sustainable agriculture requires.

  5. Biology 494 Biology Internship

    E-Print Network [OSTI]

    Wurtele, Eve Syrkin

    Biology 494 Biology Internship Guidelines The Biology Program encourages students to seek out and participate in internship opportunities that have a clear biological focus. Internships may be arranged may receive credit in Biology 494 (Biology Internship) for participation in internships, regardless

  6. Human Embryology & Developmental Biology

    E-Print Network [OSTI]

    Levi, Ran

    Biology is the modern synthesis of biological and medical sciences that looks at how the tissues, and is at the forefront of recent advances in modern medicine. Current research has shown that many of the molecular Web Pages for names). The Head of School of Medical Sciences is always available for advice regarding

  7. College of Agriculture and Life Sciences Civic Agriculture and Food Systems Minor

    E-Print Network [OSTI]

    Virginia Tech

    College of Agriculture and Life Sciences Civic Agriculture and Food Systems Minor The proposed Civic Agriculture and Food Systems (CAFS) minor within the College of Agriculture and Life Sciences agriculture and food system that relies on local resources and serves local markets and citizens. The minor

  8. Designing Better Scaffolding in Simulation-Based Learning Environments Teaching Science Systems: A Pilot Study Report

    E-Print Network [OSTI]

    Designing Better Scaffolding in Simulation-Based Learning Environments Teaching Science Systems strong science background. They were asked to learn a chemical system in a simulation-based environment; simulation-based learning environments; scaffolding. Research Background Systems thinking skills have become

  9. Regulatory Science: Principles & Practices in Food Systems SCSC 634 | Fall 2014

    E-Print Network [OSTI]

    will possess a practical knowledge of how to apply risk analysis to hazards in regulated products. The course: · Emerging Field of Regulatory Science · Regulatory Policy · Role of Risk Analysis in Regulatory Science - Perform a Quantitative Risk Assessment #12;Regulatory Science: Principles & Practices in Food Systems SCSC

  10. Citizen Science System Assemblages: Toward Greater Understanding of Technologies to Support Crowdsourced

    E-Print Network [OSTI]

    Crowston, Kevin

    Citizen Science System Assemblages: Toward Greater Understanding of Technologies to Support crowston@syr.edu ABSTRACT We explore the nature of technologies to support citizen science, a method different citizen science platforms may be comprised of widely varying functionalities, yet still support

  11. Computer Science Adjunct Faculty Position for Computer Networks and Database Systems

    E-Print Network [OSTI]

    Plotkin, Joshua B.

    Computer Science Adjunct Faculty Position for Computer Networks and Database Systems Connecticut College is seeking an adjunct professor (rank open) of computer science to teach Computer Networks (COM315 have a Masters or equivalent in Computer Science or related field. The catalog course descriptions

  12. How sulphate-reducing microorganisms cope with stress: Lessons from systems biology

    SciTech Connect (OSTI)

    Zhou, J.; He, Q.; Hemme, C.L.; Mukhopadhyay, A.; Hillesland, K.; Zhou, A.; He, Z.; Nostrand, J.D. Van; Hazen, T.C.; Stahl, D.A.; Wall, J.D.; Arkin, A.P.

    2011-04-01T23:59:59.000Z

    Sulphate-reducing microorganisms (SRMs) are a phylogenetically diverse group of anaerobes encompassing distinct physiologies with a broad ecological distribution. As SRMs have important roles in the biogeochemical cycling of carbon, nitrogen, sulphur and various metals, an understanding of how these organisms respond to environmental stresses is of fundamental and practical importance. In this Review, we highlight recent applications of systems biology tools in studying the stress responses of SRMs, particularly Desulfovibrio spp., at the cell, population, community and ecosystem levels. The syntrophic lifestyle of SRMs is also discussed, with a focus on system-level analyses of adaptive mechanisms. Such information is important for understanding the microbiology of the global sulphur cycle and for developing biotechnological applications of SRMs for environmental remediation, energy production, biocorrosion control, wastewater treatment and mineral recovery.

  13. Final Report - Phylogenomic tools and web resources for the Systems Biology Knowledgebase

    SciTech Connect (OSTI)

    Sjolander, Kimmen

    2014-11-07T23:59:59.000Z

    The major advance during this last reporting period (8/15/12 to present) is our release of data on the PhyloFacts website: phylogenetic trees, multiple sequence alignments and other data for protein families are now available for download from http://phylogenomics.berkeley.edu/data/. This project as a whole aimed to develop high-throughput functional annotation systems that exploit information from protein 3D structure and evolution to provide highly precise inferences of various aspects of gene function, including molecular function, biological process, pathway association, Pfam domains, cellular localization and so on. We accomplished these aims by developing and testing different systems on a database of protein family trees: the PhyloFacts Phylogenomic Encyclopedia (at http://phylogenomics.berkeley.edu/phylofacts/ ).

  14. DEPARTMENT OF BIOLOGY Hurricane Savitz Hits Florida

    E-Print Network [OSTI]

    Kelly, John J.

    DEPARTMENT OF BIOLOGY Hurricane Savitz Hits Florida (Photo Credit: Michael Masellis, Biology Major Hurricane Savitz Hits Florida Future Science Teachers' Club Recent Grant Successes Forthcoming Publications

  15. Co-Funding for the Conference on Magnetic Resonance in Biological Systems

    SciTech Connect (OSTI)

    Alan McLaughlin, Ph.D., Director, Division of Applied Science & Technology, NIBIB, NIH

    2008-10-01T23:59:59.000Z

    The XXIst International Conference on Magnetic Resonance in Biological Systems (ICMRBS 2005), '60th anniversary of the discovery of Nuclear Magnetic Resonance,' was held between 16 and 21 January 2005 in Hyderabad, India. The meeting focused on a broad range of magnetic resonance methods as applied to studies of biological processes related to human health. The biennial ICMRBS has become the major venue for discussion of advances in nuclear and electron magnetic resonance (NMR & EMR/EPR) studies of the structure, dynamics, and chemical properties of important classes of biomolecules. Magnetic resonance has become an established tool in structural biology, and its special importance derives from its ability to provide atomic level information. It is becoming increasingly evident that the dynamic features of biomolecules, their intermolecular interactions, and accessible conformations in solution are data of key importance in understanding molecular recognition and function. NMR, which is already contributing to approximately 25% of the new structures being deposited with the Protein Data Bank, is destined to be a major player in the post genomic structure age with its emphasis on structure and function. In-vivo magnetic resonance spectroscopy (MRS) and magnetic resonance imaging (MRI) results shed light on human metabolic processes and on the cellular ramifications of cancer, stroke, cardiovascular disease, and other pathologies. New methodologies in metabonomics may lead to development of new drugs and medical diagnosis. The ICMRBS is the one conference that brings together experts from high-resolution NMR, solid state NMR, EPR, in-vivo MRS and MRI, and developers of instrumentation, techniques, software, and databases. Symposia at this ICMRBS are designed to continue the fruitful cross-fertilization of ideas that has been so successful in driving the spectacular advances in this field. ICMRBS 2005 maintained the traditional format of poster sessions, and plenary lectures that highlight major advances in each of the major areas, and three parallel symposia that focused on particular biological systems, interfacial applications of magnetic resonance, and rapidly advancing technology. Funds provided partial travel support for 33 younger scientists from the U.S. (graduate students, postdoctoral research associates, and beginning faculty), selected from those who submitted accepted posters; 12 of these were invited to contribute oral presentations. Those receiving travel support were selected by a committee composed of the U.S. members of the International Advisory Committee for the meeting. Particular emphasis was placed on facilitating participation of minority and women scientists.

  16. NERSC Science Gateways

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    QCD, Materials Science, Science Gateways About Science Gateways A science gateway is a web based interface to access HPC computers and storage systems. Gateways allow science...

  17. Magnetophoretic bead trapping in a high-flowrate biological detection system.

    SciTech Connect (OSTI)

    Galambos, Paul C.; Hopkins, Matthew Morgan; Rahimian, Kamayar; Martin, James Ellis; Anderson, G. Ronald; Clem, Paul Gilbert; Rohwer, Lauren Elizabeth Shea; Lemp, Thomas; Derzon, Mark Steven; James, Conrad D.

    2005-03-01T23:59:59.000Z

    This report contains the summary of the 'Magnetophoretic Bead Trapping in a High-Flowrate Biological Detection System' LDRD project 74795. The objective of this project is to develop a novel biodetection system for high-throughput sample analysis. The chief application of this system is in detection of very low concentrations of target molecules from a complex liquid solution containing many different constituents--some of which may interfere with identification of the target molecule. The system is also designed to handle air sampling by using an aerosol system (for instance a WESP - Wet Electro-Static Precipitator, or an impact spray system) to get air sample constituents into the liquid volume. The system described herein automatically takes the raw liquid sample, whether air converted or initially liquid matrix, and mixes in magnetic detector beads that capture the targets of interest and then performs the sample cleanup function, allowing increased sensitivity and eliminating most false positives and false negatives at a downstream detector. The surfaces of the beads can be functionalized in a variety of ways in order to maximize the number of targets to be captured and concentrated. Bacteria and viruses are captured using antibodies to surface proteins on bacterial cell walls or viral particle coats. In combination with a cell lysis or PCR (Polymerase Chain Reaction), the beads can be used as a DNA or RNA probe to capture nucleic acid patterns of interest. The sample cleanup capability of this system would allow different raw biological samples, such as blood or saliva to be analyzed for the presence of different infectious agents (e.g. smallpox or SARS). For future studies, we envision functionalizing bead surfaces to bind to chemical weapons agents, radio-isotopes, and explosives. The two main objectives of this project were to explore methods for enhancing the mixing of the capture microspheres in the sample, and to develop a novel high-throughput magnetic microsphere trap. We have developed a novel technique using the magnetic capture microspheres as 'stirrer bars' in a fluid sample to enhance target binding to the microsphere surfaces. We have also made progress in developing a polymer-MEMS electromagnet for trapping magnetic spheres in a high-flowrate fluid format.

  18. Integrated Omics in Systems Biology: The New Frontier for Environmental Biotechnology

    SciTech Connect (OSTI)

    Hazen, Terry C.

    2008-08-12T23:59:59.000Z

    Environmental biotechnology encompasses a wide range of characterization, monitoring and control for bioenergy and bioremediation technologies that are based on biological processes. Recent breakthroughs in our understanding of biogeochemical processes and genomics are leading to exciting new and cost effective ways to monitor and manipulate the environment and potentially produce bioenergy fuels as we also cleanup the environment. Indeed, our ability to sequence an entire microbial genome in just a few hours is leading to similar breakthroughs in characterizing proteomes, metabolomes, phenotypes, and fluxes for organisms, populations, and communities. Understanding and modeling functional microbial community structure and stress responses in subsurface environments has tremendous implications for our fundamental understanding of biogeochemistry and the potential for making biofuel breakthroughs. Monitoring techniques that inventory and monitor terminal electron acceptors and electron donors, enzyme probes that measure functional activity in the environment, functional genomic microarrays, phylogenetic microarrays, metabolomics, proteomics, and quantitative PCR are also being rapidly adapted for studies in environmental biotechnology. Integration of all of these new high throughput techniques using the latest advances in bioinformatics and modeling will enable break-through science in environmental biotechnology. A review of these techniques with examples from field studies and lab simulations will be discussed.

  19. Computer Simulations with Mathematica: Explorations in Complex Physical and Biological Systems, by Richard J. Gaylord and Paul R. Wellin. Springer-

    E-Print Network [OSTI]

    Scales, John

    not end up learning much about simulation per se or the systems supposedly being studied. Let me quoteComputer Simulations with Mathematica: Explorations in Complex Physical and Biological Systems simulations of natural phenomena have been used for as long as there have been computers. The first Monte

  20. Biological Sciences at NERSC

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645 3,625 1,006 492 742EnergyOnItem NotEnergy,ARMForms About Batteries Batteries An errorA Mostbio BioFuels Probing

  1. Ultrashort pulse high repetition rate laser system for biological tissue processing

    DOE Patents [OSTI]

    Neev, J.; Da Silva, L.B.; Matthews, D.L.; Glinsky, M.E.; Stuart, B.C.; Perry, M.D.; Feit, M.D.; Rubenchik, A.M.

    1998-02-24T23:59:59.000Z

    A method and apparatus are disclosed for fast, efficient, precise and damage-free biological tissue removal using an ultrashort pulse duration laser system operating at high pulse repetition rates. The duration of each laser pulse is on the order of about 1 fs to less than 50 ps such that energy deposition is localized in a small depth and occurs before significant hydrodynamic motion and thermal conduction, leading to collateral damage, can take place. The depth of material removed per pulse is on the order of about 1 micrometer, and the minimal thermal and mechanical effects associated with this ablation method allows for high repetition rate operation, in the region 10 to over 1000 Hertz, which, in turn, achieves high material removal rates. The input laser energy per ablated volume of tissue is small, and the energy density required to ablate material decreases with decreasing pulse width. The ablation threshold and ablation rate are only weakly dependent on tissue type and condition, allowing for maximum flexibility of use in various biological tissue removal applications. The use of a chirped-pulse amplified Titanium-doped sapphire laser is disclosed as the source in one embodiment. 8 figs.

  2. Ultrashort pulse high repetition rate laser system for biological tissue processing

    DOE Patents [OSTI]

    Neev, Joseph (Laguna Beach, CA); Da Silva, Luiz B. (Danville, CA); Matthews, Dennis L. (Moss Beach, CA); Glinsky, Michael E. (Livermore, CA); Stuart, Brent C. (Fremont, CA); Perry, Michael D. (Livermore, CA); Feit, Michael D. (Livermore, CA); Rubenchik, Alexander M. (Livermore, CA)

    1998-01-01T23:59:59.000Z

    A method and apparatus is disclosed for fast, efficient, precise and damage-free biological tissue removal using an ultrashort pulse duration laser system operating at high pulse repetition rates. The duration of each laser pulse is on the order of about 1 fs to less than 50 ps such that energy deposition is localized in a small depth and occurs before significant hydrodynamic motion and thermal conduction, leading to collateral damage, can take place. The depth of material removed per pulse is on the order of about 1 micrometer, and the minimal thermal and mechanical effects associated with this ablation method allows for high repetition rate operation, in the region 10 to over 1000 Hertz, which, in turn, achieves high material removal rates. The input laser energy per ablated volume of tissue is small, and the energy density required to ablate material decreases with decreasing pulse width. The ablation threshold and ablation rate are only weakly dependent on tissue type and condition, allowing for maximum flexibility of use in various biological tissue removal applications. The use of a chirped-pulse amplified Titanium-doped sapphire laser is disclosed as the source in one embodiment.

  3. Campaign-level science traceability for Earth observation system architecting

    E-Print Network [OSTI]

    Seher, Theodore K. (Theodore Kimball)

    2009-01-01T23:59:59.000Z

    The Earth Sciences Decadal Survey of 2007 presented a comprehensive vision for the evolution of space-based Earth Science resources. The practical development of the Decadal campaign, however, has highlighted four challenges ...

  4. Imaging corn plants with PhytoPET, a modular PET system for plant biology

    SciTech Connect (OSTI)

    Lee, S.; Kross, B.; McKisson, J.; McKisson, J. E.; Weisenberger, A. G.; Xi, W.; Zorn, C.; Bonito, G.; Howell, C. R.; Reid, C. D.; Crowell, A.; Cumberbatch, L. C.; Topp, C.; Smith, M. F.

    2013-11-01T23:59:59.000Z

    PhytoPET is a modular positron emission tomography (PET) system designed specifically for plant imaging. The PhytoPET design allows flexible arrangements of PET detectors based on individual standalone detector modules built from single Hamamatsu H8500 position sensitive photomultiplier tubes and pixelated LYSO arrays. We have used the PhytoPET system to perform preliminary corn plant imaging studies at the Duke University Biology Department Phytotron. Initial evaluation of the PhytoPET system to image the biodistribution of the positron emitting tracer {sup 11}C in corn plants is presented. {sup 11}CO{sub 2} is loaded into corn seedlings by a leaf-labeling cuvette and translocation of {sup 11}C-sugars is imaged by a flexible arrangement of PhytoPET modules on each side. The PhytoPET system successfully images {sup 11}C within corn plants and allows for the dynamic measurement of {sup 11}C-sugar translocation from the leaf to the roots.

  5. Biological and Environmental Research Network Requirements

    SciTech Connect (OSTI)

    Balaji, V. [Princeton Univ., NJ (United States). Earth Science Grid Federation (ESGF); Boden, Tom [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Cowley, Dave [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Dart, Eli [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Dattoria, Vince [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Desai, Narayan [Argonne National Lab. (ANL), Argonne, IL (United States); Egan, Rob [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Foster, Ian [Argonne National Lab. (ANL), Argonne, IL (United States); Goldstone, Robin [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Gregurick, Susan [U.S. Dept. of Energy, Washington, DC (United States). Biological Systems Science Division; Houghton, John [U.S. Dept. of Energy, Washington, DC (United States). Biological and Environmental Research (BER) Program; Izaurralde, Cesar [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Johnston, Bill [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Joseph, Renu [U.S. Dept. of Energy, Washington, DC (United States). Climate and Environmental Sciences Division; Kleese-van Dam, Kerstin [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Lipton, Mary [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Monga, Inder [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Pritchard, Matt [British Atmospheric Data Centre (BADC), Oxon (United Kingdom); Rotman, Lauren [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Strand, Gary [National Center for Atmospheric Research (NCAR), Boulder, CO (United States); Stuart, Cory [Argonne National Lab. (ANL), Argonne, IL (United States); Tatusova, Tatiana [National Inst. of Health (NIH), Bethesda, MD (United States); Tierney, Brian [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Thomas, Brian [Univ. of California, Berkeley, CA (United States); Williams, Dean N. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Zurawski, Jason [Internet2, Washington, DC (United States)

    2013-09-01T23:59:59.000Z

    The Energy Sciences Network (ESnet) is the primary provider of network connectivity for the U.S. Department of Energy (DOE) Office of Science (SC), the single largest supporter of basic research in the physical sciences in the United States. In support of SC programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs that it serves. This focus has helped ESnet be a highly successful enabler of scientific discovery for over 25 years. In November 2012, ESnet and the Office of Biological and Environmental Research (BER) of the DOE SC organized a review to characterize the networking requirements of the programs funded by the BER program office. Several key findings resulted from the review. Among them: 1) The scale of data sets available to science collaborations continues to increase exponentially. This has broad impact, both on the network and on the computational and storage systems connected to the network. 2) Many science collaborations require assistance to cope with the systems and network engineering challenges inherent in managing the rapid growth in data scale. 3) Several science domains operate distributed facilities that rely on high-performance networking for success. Key examples illustrated in this report include the Earth System Grid Federation (ESGF) and the Systems Biology Knowledgebase (KBase). This report expands on these points, and addresses others as well. The report contains a findings section as well as the text of the case studies discussed at the review.

  6. Designing Biological Systems for Sustainability and Programmed Environmental Interface (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Silver, Pam [Harvard University

    2011-06-03T23:59:59.000Z

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Pam Silver of Harvard University gives a presentation on "Designing Biological Systems for Sustainability and Programmed Environmental Interface" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  7. Designing Biological Systems for Sustainability and Programmed Environmental Interface (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Silver, Pam [Harvard University] [Harvard University

    2011-03-23T23:59:59.000Z

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Pam Silver of Harvard University gives a presentation on "Designing Biological Systems for Sustainability and Programmed Environmental Interface" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  8. COLLEGE OF AGRICULTURE AND LIFE SCIENCES CHECKSHEET for a MINOR in CIVIC AGRICULTURE AND FOOD SYSTEMS

    E-Print Network [OSTI]

    Liskiewicz, Maciej

    COLLEGE OF AGRICULTURE AND LIFE SCIENCES CHECKSHEET for a MINOR in CIVIC AGRICULTURE AND FOOD SYSTEMS Offered by Academic Programs in the College of Agriculture and Life Sciences Effective for Students Graduating 2015 The minor in Civic Agriculture and Food Systems embodies a commitment

  9. How Does the Republic of Science Shape the Patent System? Broadening the

    E-Print Network [OSTI]

    Loudon, Catherine

    357 How Does the Republic of Science Shape the Patent System? Broadening the Institutional Analysis of Innovation Beyond Patents Fiona E. Murray,* Joshua S. Gans,** and Mackey L. Craven*** I. The Republic. Intertwined Relationship Between the Patent System & the Republic of Science

  10. Department of Management Science & Information System. Rutgers Business SchoolNewark and New Brunswick

    E-Print Network [OSTI]

    Lin, Xiaodong

    . Department of Management Science & Information System. Rutgers Business School­Newark and New of Management Science and Information Systems of Rutgers Business School ­ Newark and New Brunswick invites of Rutgers, the State University of New Jersey, which is a vibrant public research university. The Rutgers

  11. Department of Management Science & Information System. Rutgers Business SchoolNewark and New Brunswick

    E-Print Network [OSTI]

    Lin, Xiaodong

    . Department of Management Science & Information System. Rutgers Business School­Newark and New of Management Science and Information Systems of Rutgers Business School ­ Newark and New Brunswick invites is a vibrant public research university. The Rutgers Business School is located in two campuses: Newark and New

  12. A View to the FutureBERKELEY LAB 2005/2006 REPORT A Note from the Director / 2 Energy Technologies and Environmental Solutions / 4 Living Systems and Quantitative Biology / 8 Frontiers in Nanoscience / 12 Exploring Matter and Energy in the Universe / 16

    E-Print Network [OSTI]

    Knowles, David William

    A View to the FutureBERKELEY LAB 2005/2006 REPORT #12;A Note from the Director / 2 Energy Technologies and Environmental Solutions / 4 Living Systems and Quantitative Biology / 8 Frontiers in Nanoscience / 12 Exploring Matter and Energy in the Universe / 16 X-Ray and Ultrafast Science / 20 Advanced

  13. Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses

    SciTech Connect (OSTI)

    Yang, Shihui [ORNL; Pan, Chongle [ORNL; Tschaplinski, Timothy J [ORNL; Hurst, Gregory {Greg} B [ORNL; Engle, Nancy L [ORNL; Zhou, Wen [University of Georgia, Athens, GA; Dam, Phuongan [ORNL; Xu, Ying [University of Georgia, Athens, GA; Dice, Lezlee T [ORNL; Davison, Brian H [ORNL; Brown, Steven D [ORNL

    2013-01-01T23:59:59.000Z

    Zymomonas mobilis ZM4 is a capable ethanogenic bacterium with high ethanol productivity and high level of ethanol tolerance. Previous studies indicated that several stress-related proteins and changes in the ZM4 membrane lipid composition may contribute to ethanol tolerance. However, the molecular mechanisms of ethanol stress response have not been elucidated fully. In this study, ethanol stress responses were investigated using systems biology tools. Medium supplementation with an initial 47.3 g/L (6% v/v) ethanol reduced Z. mobilis ZM4 glucose consumption, growth rate and ethanol productivity compared to that of untreated controls. Metabolomic profiling showed that ethanol-treated ZM4 cells accumulated greater amounts of glycerol during the entire fermentation process, which may indicate an important role for this metabolite. A proteomic analysis of early exponential growth identified about one thousand proteins, or approximately 56% of the predicted ZM4 proteome. Proteins related to metabolism and stress response such as chaperones and key regulators were more abundant in the early ethanol stress condition. Transcriptomic studies indicated the response of ZM4 to ethanol is dynamic, complex and involves many genes from all the different functional categories. There were fewer genes significantly differentially expressed in the exponential phase compared to that of stationary phase and early stationary phase. Most down-regulated genes were related to translation and ribosome biogenesis, while the ethanol-upregulated genes were mostly related to cellular processes and metabolism. Correlations among the transcriptomics, proteomics and metabolism were examined and among significantly expressed genes or proteins, we observe higher correlation coefficients when fold-change values are higher. This systems biology study elucidates key Z. mobilis ZM4 metabolites, genes and proteins that form the foundation of its distinctive physiology and its multifaceted response to ethanol stress.

  14. The Encyclopedia of Systems Biology and OMICS (first presentation) and The ISA Infrastructure for Multi-omics Data (second presentation) (GSC8 Meeting)

    SciTech Connect (OSTI)

    Kolker, Eugene [Seattle Children's Hospital; Sansone, Susanna [EBI

    2011-09-11T23:59:59.000Z

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Eugene Kolker from Seattle Children's Hospital briefly discusses "The Encyclopedia of Systems Biology and OMICS," followed by Susanna Sansone from the EBI on "The ISA Infrastructure for multi-omics data" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 11, 2009.

  15. The Encyclopedia of Systems Biology and OMICS (first presentation) and The ISA Infrastructure for Multi-omics Data (second presentation) (GSC8 Meeting)

    ScienceCinema (OSTI)

    Kolker, Eugene [Seattle Children's Hospital]; Sansone, Susanna [EBI

    2011-04-28T23:59:59.000Z

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Eugene Kolker from Seattle Children's Hospital briefly discusses "The Encyclopedia of Systems Biology and OMICS," followed by Susanna Sansone from the EBI on "The ISA Infrastructure for multi-omics data" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 11, 2009.

  16. Systems Biology Analysis of Brucella Infected Peyers Patch Reveals Rapid Invasion with Modest Transient Perturbations of the Host Transcriptome

    E-Print Network [OSTI]

    Rossetti, Carlos A.; Drake, Kenneth L.; Siddavatam, Prasad; Lawhon, Sara D.; Nunes, Jairo E.; Gull, Tamara; Khare, Sangeeta; Everts, Robin E.; Lewin, Harris A.; Adams, Leslie Garry

    2013-12-09T23:59:59.000Z

    Systems Biology Analysis of Brucella Infected Peyer’s Patch Reveals Rapid Invasion with Modest Transient Perturbations of the Host Transcriptome Carlos A. Rossetti1¤a, Kenneth L. Drake2, Prasad Siddavatam2, Sara D. Lawhon1, Jairo E. S. Nunes1... mechanisms. Citation: Rossetti CA, Drake KL, Siddavatam P, Lawhon SD, Nunes JES, et al. (2013) Systems Biology Analysis of Brucella Infected Peyer’s Patch Reveals Rapid Invasion with Modest Transient Perturbations of the Host Transcriptome. PLoS ONE 8(12): e...

  17. Metal Hydrides - Science Needs

    Broader source: Energy.gov (indexed) [DOE]

    with traditions in metal hydride research Metal and Ceramic Sciences Condensed Matter Physics Materials Chemistry Chemical and Biological Sciences Located on campus of Tier...

  18. Extracting information from biological networks

    E-Print Network [OSTI]

    Chindelevitch, Leonid Alexandrovich

    2010-01-01T23:59:59.000Z

    Systems biology, the study of biological systems in a holistic manner, has been catalyzed by a dramatic improvement in experimental techniques, coupled with a constantly increasing availability of biological data. The ...

  19. COMPUTER SCIENCE INFORMATION TECHNOLOGY

    E-Print Network [OSTI]

    Dunstan, Neil

    COMPUTER SCIENCE and INFORMATION TECHNOLOGY POSTGRADUATE STUDIES 2006 School of Mathematics of Information Systems with Honours Master of Science (Computer Science) Professional Doctorate in Science (Computer Science) PhD (Computer Science) The postgraduate programs in Computer Science and Information

  20. Efficiency, Robustness and Stochasticity of Gene Regulatory Networks in Systems Biology: lambda Switch as a Working Example

    E-Print Network [OSTI]

    X. Zhu; L. Yin; L. Hood; D. Galas; P. Ao

    2006-02-09T23:59:59.000Z

    Phage lambda is one of the most studied biological models in modern molecular biology. Over the past 50 years quantitative experimental knowledge on this biological model has been accumulated at all levels: physics, chemistry, genomics, proteomics, functions, and more. All its components have been known to a great detail. The theoretical task has been to integrate its components to make the organism working quantitatively in a harmonic manner. This would test our biological understanding and would lay a solid fundamental for further explorations and applications, an obvious goal of systems biology. One of the outstanding challenges in doing so has been the so-called stability puzzle of lambda switch: the biologically observed robustness and its difficult mathematical reconstruction based on known experimental values. In this chapter we review the recent theoretical and experimental efforts on tackling this problem. An emphasis is put on the minimum quantitative modeling where a successful numerical agreement between experiments and modeling has been achieved. A novel method tentatively named stochastic dynamical structure analysis emerged from such study is also discussed within a broad modeling perspective.

  1. The interdisciplinary field of Biomedical Engineering combines elements of engineering (electronics, systems

    E-Print Network [OSTI]

    Rohs, Remo

    32 The interdisciplinary field of Biomedical Engineering combines elements of engineering (electronics, systems analysis, fluid mechanics) with the life sciences (biology, physiology, biochemistry) to define and solve problems in biology and medicine. Students choose this growing branch of engineering

  2. The interdisciplinary field of Biomedical Engineering combines elements of engineering (electronics, systems analysis, fluid

    E-Print Network [OSTI]

    Rohs, Remo

    32 The interdisciplinary field of Biomedical Engineering combines elements of engineering (electronics, systems analysis, fluid mechanics) with the life sciences (biology, physiology, biochemistry) to define and solve problems in biology and medicine. Students choose this growing branch of engineering

  3. Biagioli, Mario, Galileo's System of Patronage , History of Science, 28:1=79 (1990:Mar.) p.1 Biagioli, Mario, Galileo's System of Patronage , History of Science, 28:1=79 (1990:Mar.) p.1

    E-Print Network [OSTI]

    Biagioli, Mario, Galileo's System of Patronage , History of Science, 28:1=79 (1990:Mar.) p.1 #12;Biagioli, Mario, Galileo's System of Patronage , History of Science, 28:1=79 (1990:Mar.) p.1 #12;Biagioli, Mario, Galileo's System of Patronage , History of Science, 28:1=79 (1990:Mar.) p.1 #12;Biagioli, Mario

  4. A Comprehensive Collection of Systems Biology Data Characterizing the Host Response to Viral Infection

    SciTech Connect (OSTI)

    Aevermann, Brian; Pickett, Brett E.; Kumar, Sanjeev; Klem, Edward B.; Agnihothram, Sudhakar; Askovich, Peter S.; Bankhead, Armand; Bolles, Meagan; Carter, Victoria; Chang, Jean H.; Clauss, Therese RW; Dash, Pradyot; Diercks, Alan H.; Eisfeld, Amie J.; Ellis, Amy L.; Fan, Shufang; Ferris, Martin T.; Gralinski, Lisa; Green, Richard; Gritsenko, Marina A.; Hatta, Masato; Heegel, Robert A.; Jacobs, Jon M.; Jeng, Sophia; Josset, Laurence; Kaiser, Shari M.; Kelly, Sarah; Law, Gale L.; Li, Chengjun; Li, Jiangning; Long, Casey; Luna, Maria L.; Matzke, Melissa M.; McDermott, Jason E.; Menachery, Vineet; Metz, Thomas O.; Mitchell, Hugh D.; Monroe, Matthew E.; Navarro, Garnet; Neumann, Gabriele; Podyminogin, Rebecca L.; Purvine, Samuel O.; Rosenberger, Carrie; Sanders, Catherine J.; Schepmoes, Athena A.; Shukla, Anil K.; Sims, Amy; Sova, Pavel; Tam, Vincent C.; Tchitchek, Nicholas; Thomas, Paul G.; Tilton, Susan C.; Totura, Allison L.; Wang, Jing; Webb-Robertson, Bobbie-Jo M.; Wen, Ji; Weiss, Jeffrey M.; Yang, Feng; Yount, Boyd; Zhang, Qibin; Mcweeney, Shannon K.; Smith, Richard D.; Waters, Katrina M.; Kawaoka, Yoshihiro; Baric, Ralph; Aderem, Alan; Katze, Michael G.; Scheuermann, Richard H.

    2014-10-14T23:59:59.000Z

    The Systems Biology for Infectious Diseases Research program was established by the U.S. National Institute of Allergy and Infectious Diseases to investigate host-pathogen interactions at a systems level. This program generated 47 transcriptomic and proteomic datasets from 30 studies that investigate in vivo and in vitro host responses to viral infections. Human pathogens in the Orthomyxoviridae and Coronaviridae families, especially pandemic H1N1 and avian H5N1 influenza A viruses and severe acute respiratory syndrome coronavirus (SARS-CoV), were investigated. Study validation was demonstrated via experimental quality control measures and meta-analysis of independent experiments performed under similar conditions. Primary assay results are archived at the GEO and PeptideAtlas public repositories, while processed statistical results together with standardized metadata are publically available at the Influenza Research Database (www.fludb.org) and the Virus Pathogen Resource (www.viprbrc.org). By comparing data from mutant versus wild-type virus and host strains, RNA versus protein differential expression, and infection with genetically similar strains, these data can be used to further investigate genetic and physiological determinants of host responses to viral infection.

  5. Water Use in Agricultural Watersheds Derrel Martin, Professor, Irrigation and Water Resources Engineer, Dept. of Biological Systems

    E-Print Network [OSTI]

    Nebraska-Lincoln, University of

    Water Use in Agricultural Watersheds Derrel Martin, Professor, Irrigation and Water Resources Engineer, Dept. of Biological Systems Engineering, UNL Background Concerns about water use have intensified and Republican River Basins, and the implementation of LB 962. To understand water use it is helpful to consider

  6. S bi l f d h d dSystems biology software, data exchange standards and ontologies

    E-Print Network [OSTI]

    Rostock, Universität

    exchange formats o XML based standards o Standards for graphical representation 3. Ontologies (Gene formats o XML based standards o Standards for graphical representation 3. Ontologies (Gene Ontology) 4S bi l f d h d dSystems biology software, data exchange standards and ontologies Ulf Schmitz04 01

  7. Contributions to the Theory of Thermostated Systems II: Least Dissipation of Helmholtz Free Energy in Nano-Biology

    E-Print Network [OSTI]

    Ronald F. Fox

    2015-03-12T23:59:59.000Z

    In this paper, we develop further the theory of thermostated systems along the lines of our earlier paper. Two results are highlighted: 1) in the Markov limit of the contracted description, a least dissipation of Helmholtz free energy principle is established; and 2) a detailed account of the appropriateness of this principle for nano-biology, including the evolution of life, is presented.

  8. Contributions to the Theory of Thermostated Systems II: Least Dissipation of Helmholtz Free Energy in Nano-Biology

    E-Print Network [OSTI]

    Ronald F. Fox

    2015-03-11T23:59:59.000Z

    In this paper, we develop further the theory of thermostated systems along the lines of our earlier paper. Two results are highlighted: 1) in the Markov limit of the contracted description, a least dissipation of Helmholtz free energy principle is established; and 2) a detailed account of the appropriateness of this principle for nano-biology, including the evolution of life, is presented.

  9. Bayer Material Science (TRL 1 2 3 System)- River Devices to Recover Energy with Advanced Materials(River DREAM)

    Broader source: Energy.gov [DOE]

    Bayer Material Science (TRL 1 2 3 System) - River Devices to Recover Energy with Advanced Materials(River DREAM)

  10. Integrated Omics in Systems Biology: The New Frontier for Environmental Biotechnology

    E-Print Network [OSTI]

    Hazen, Terry C.

    2008-01-01T23:59:59.000Z

    biology Comparative Genomics Metabolomics DNA Microarraysand Environmental Research, Genomics Program:GTL throughINSTITUTE FOR ENVIRONMENTAL GENOMICS UNIVERSITY OF OKLAHOMA

  11. Computational e-Science Studying complex systems in silico

    E-Print Network [OSTI]

    -scale Molecular Modeling Impact on Science and Society Opportunities Research Issues Theme II: The National e Issues Resources Required Metrics of Success Visualization of multi-scale processes Impact on Science on understanding through modeling and simulation of interdisciplinary, multi-domain, multi-scale processes

  12. Data Mining in Earth System Science (DMESS 2011)

    SciTech Connect (OSTI)

    Hoffman, Forrest M [ORNL] [ORNL; Larson, Jay [Argonne National Laboratory (ANL)] [Argonne National Laboratory (ANL); Mills, Richard T [ORNL] [ORNL; Brooks, Bjorn [ORNL] [ORNL; Ganguly, Auroop R [ORNL] [ORNL; Hargrove, William Walter [ORNL] [ORNL; Huang, Jian [University of Tennessee, Knoxville (UTK)] [University of Tennessee, Knoxville (UTK); Kumar, Jitendra [ORNL] [ORNL; Vatsavai, Raju [ORNL] [ORNL

    2011-01-01T23:59:59.000Z

    From field-scale measurements to global climate simulations and remote sensing, the growing body of very large and long time series Earth science data are increasingly difficult to analyze, visualize, and interpret. Data mining, information theoretic, and machine learning techniques - such as cluster analysis, singular value decomposition, block entropy, Fourier and wavelet analysis, phase-space reconstruction, and artificial neural networks - are being applied to problems of segmentation, feature extraction, change detection, model-data comparison, and model validation. The size and complexity of Earth science data exceed the limits of most analysis tools and the capacities of desktop computers. New scalable analysis and visualization tools, running on parallel cluster computers and supercomputers, are required to analyze data of this magnitude. This workshop will demonstrate how data mining techniques are applied in the Earth sciences and describe innovative computer science methods that support analysis and discovery in the Earth sciences.

  13. Data mining in earth system science (DMESS 2011).

    SciTech Connect (OSTI)

    Hoffman, F. M.; Larson, J. W.; Mills, R. T.; Brooks, B. G. J.; Ganguly, A. R.; Hargrove, W. W.; Huang, J.; Kumar, J.; Vatsavai, R. R. (Mathematics and Computer Science); (Compuational Earth Sciences Group, Oak Ridge National Laboratory); (Department of Earth System Science); (Computation Institute, University of Chicago/Argonne National Laboratory); (School of Computer Science, The Australian National University); (Department of Electrical Engineering & Computer Science, University of Tennessee); (Center for Clmatic Research, University of Wisconsin); (Geographic Information Science and Technology Group, Oak Ridge National Laboratory); (Eastern Forest Environmental Threat Assessment Center (EFETAC), USDA Forest Service)

    2011-01-01T23:59:59.000Z

    From field-scale measurements to global climate simulations and remote sensing, the growing body of very large and long time series Earth science data are increasingly difficult to analyze, visualize, and interpret. Data mining, information theoretic, and machine learning techniques - such as cluster analysis, singular value decomposition, block entropy, Fourier and wavelet analysis, phase-space reconstruction, and artificial neural networks - are being applied to problems of segmentation, feature extraction, change detection, model-data comparison, and model validation. The size and complexity of Earth science data exceed the limits of most analysis tools and the capacities of desktop computers. New scalable analysis and visualization tools, running on parallel cluster computers and supercomputers, are required to analyze data of this magnitude. This workshop will demonstrate how data mining techniques are applied in the Earth sciences and describe innovative computer science methods that support analysis and discovery in the Earth sciences.

  14. The Departments of Biological Sciences and Geography jointly offer instruction leading to a post-diploma major in Environmental Science for students who have completed the Diploma in

    E-Print Network [OSTI]

    Seldin, Jonathan P.

    ) Lakeland College Environmental Conservation and Reclamation Environmental Monitoring and Compliance Fish Classification and Reclamation Soil and Water Conservation Selkirk College Integrated Environmental Planning- diploma major in Environmental Science for students who have completed the Diploma in Renewable Resource

  15. A case for Sandia investment in complex adaptive systems science and technology.

    SciTech Connect (OSTI)

    Colbaugh, Richard; Tsao, Jeffrey Yeenien; Johnson, Curtis Martin; Backus, George A.; Brown, Theresa Jean; Jones, Katherine A.

    2012-05-01T23:59:59.000Z

    This white paper makes a case for Sandia National Laboratories investments in complex adaptive systems science and technology (S&T) -- investments that could enable higher-value-added and more-robustly-engineered solutions to challenges of importance to Sandia's national security mission and to the nation. Complex adaptive systems are ubiquitous in Sandia's national security mission areas. We often ignore the adaptive complexity of these systems by narrowing our 'aperture of concern' to systems or subsystems with a limited range of function exposed to a limited range of environments over limited periods of time. But by widening our aperture of concern we could increase our impact considerably. To do so, the science and technology of complex adaptive systems must mature considerably. Despite an explosion of interest outside of Sandia, however, that science and technology is still in its youth. What has been missing is contact with real (rather than model) systems and real domain-area detail. With its center-of-gravity as an engineering laboratory, Sandia's has made considerable progress applying existing science and technology to real complex adaptive systems. It has focused much less, however, on advancing the science and technology itself. But its close contact with real systems and real domain-area detail represents a powerful strength with which to help complex adaptive systems science and technology mature. Sandia is thus both a prime beneficiary of, as well as potentially a prime contributor to, complex adaptive systems science and technology. Building a productive program in complex adaptive systems science and technology at Sandia will not be trivial, but a credible path can be envisioned: in the short run, continue to apply existing science and technology to real domain-area complex adaptive systems; in the medium run, jump-start the creation of new science and technology capability through Sandia's Laboratory Directed Research and Development program; and in the long run, inculcate an awareness at the Department of Energy of the importance of supporting complex adaptive systems science through its Office of Science.

  16. Hydrology and Earth System Sciences, 10, 127137, 2006 www.copernicus.org/EGU/hess/hess/10/127/

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Hydrology and Earth System Sciences, 10, 127­137, 2006 www.copernicus.org/EGU/hess/hess/10/127/ SRef-ID: 1607-7938/hess/2006-10-127 European Geosciences Union Hydrology and Earth System Sciences Centre, Maun, Botswana Received: 11 August 2005 ­ Published in Hydrology and Earth System Sciences

  17. Hydrology and Earth System Sciences, 9, 314, 2005 www.copernicus.org/EGU/hess/hess/9/3/

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Hydrology and Earth System Sciences, 9, 3­14, 2005 www.copernicus.org/EGU/hess/hess/9/3/ SRef-ID: 1607-7938/hess/2005-9-3 European Geosciences Union Hydrology and Earth System Sciences Bringing it all, Dublin, Ireland Received: 6 December 2004 ­ Published in Hydrology and Earth System Sciences Discussions

  18. Hydrology and Earth System Sciences, 10, 7991, 2006 www.copernicus.org/EGU/hess/hess/10/79/

    E-Print Network [OSTI]

    Boyer, Edmond

    Hydrology and Earth System Sciences, 10, 79­91, 2006 www.copernicus.org/EGU/hess/hess/10/79/ SRef-ID: 1607-7938/hess/2006-10-79 European Geosciences Union Hydrology and Earth System Sciences Scale, USA Received: 1 August 2005 ­ Published in Hydrology and Earth System Sciences Discussions: 30 August

  19. Postdoc position: Hybrid Systems Theorem Proving Carnegie Mellon University, Computer Science Department

    E-Print Network [OSTI]

    Sandholm, Tuomas W.

    Postdoc position: Hybrid Systems Theorem Proving Carnegie Mellon University, Computer Science is to develop next-generation verification techniques for cyber- physical systems and hybrid systems. Our prover KeYmaera and have found application in the verification of cars, aircraft, railway systems

  20. AGRICULTURAL AND BIOLOGICAL ENGINEERING PURSUE A GRADUATE DEGREE IN

    E-Print Network [OSTI]

    Gilbert, Matthew

    AGRICULTURAL AND BIOLOGICAL ENGINEERING PURSUE A GRADUATE DEGREE IN AGRICULTURAL AND BIOLOGICAL ENGINEERING Department of Agricultural and Biological Engineering 338 Agricultural Engineering Sciences of Agricultural and Biological Engineering offers a limited number of graduate fellowships and assistantships

  1. Computational Science Technical Note CSTN-172 Plasma Visualization in Parallel using Particle Systems on Graphical Processing

    E-Print Network [OSTI]

    Hawick, Ken

    as particle systems that emit light are important in many interesting components of games, computer animated = {April}, publisher = {WorldComp}, institution = {Computer Science, Massey University, Auckland, New Ken Hawick, Computer Science, Massey University, Albany, North Shore 102-904, Auckland, New Zealand

  2. Biological and Environmental Research: Climate and Environmental Sciences Division: U.S./European Workshop on Climate Change Challenges and Observations

    SciTech Connect (OSTI)

    Mather, James [Pacific Northwest National Laboratory] [Pacific Northwest National Laboratory; McCord, Raymond [Oak Ridge National Laboratory] [Oak Ridge National Laboratory; Sisterson, Doug [Argonne National Laboratory] [Argonne National Laboratory; Voyles, Jimmy [Pacific Northwest National Laboratory] [Pacific Northwest National Laboratory

    2012-11-08T23:59:59.000Z

    The workshop aimed to identify outstanding climate change science questions and the observational strategies for addressing them. The scientific focus was clouds, aerosols, and precipitation, and the required ground- and aerial-based observations. The workshop findings will be useful input for setting priorities within the Department of Energy (DOE) and the participating European centers. This joint workshop was envisioned as the first step in enhancing the collaboration among these climate research activities needed to better serve the science community.

  3. System and method for preconcentrating, identifying, and quantifying chemical and biological substances

    DOE Patents [OSTI]

    Yu, Conrad M. (Antioch, CA); Koo, Jackson C. (San Ramon, CA)

    2000-01-01T23:59:59.000Z

    A system and method for preconcentrating, identifying, and quantifying chemical and biological substances is disclosed. An input valve directs a first volume of a sample gas to a surface acoustic wave (SAW) device. The SAW device preconcentrates and detects a mass of a substance within the sample gas. An output valve receives a second volume of the sample gas containing the preconcentrated substance from the SAW device and directs the second volume to a gas chromatograph (GC). The GC identifies the preconcentrated substance within the sample gas. A shunt valve exhausts a volume of the sample gas equal to the first volume minus the second volume away from the SAW device and the GC. The method of the present invention includes the steps of opening an input valve for passing a first volume of a sample gas to a SAW device; preconcentrating and detecting a mass of a substance within the sample gas using the SAW device; opening an output valve for passing a second volume of the sample gas containing the preconcentrated substance to a gas chromatograph (GC); and then identifying the preconcentrated substance within the sample gas using the GC.

  4. The interdisciplinary field of Biomedical Engineering combines elements of engineering (electronics, systems analysis, fluid mechanics) with the life

    E-Print Network [OSTI]

    Rohs, Remo

    34 The interdisciplinary field of Biomedical Engineering combines elements of engineering (electronics, systems analysis, fluid mechanics) with the life sciences (biology, physiology, biochemistry) to define and solve problems in biology and medicine. Students choose this growing branch of engineering

  5. Evolution and System Characteristics of China’s Science, Technology, and Innovation Policies

    E-Print Network [OSTI]

    WANG, Yuan

    2013-01-01T23:59:59.000Z

    China began its S&T system reform, featuring cuts on direct gov-gov- ernment leaders who all put science and technology in a central position in China’

  6. 2003 Synthetic Biology study

    E-Print Network [OSTI]

    Endy, Drew

    2007-08-14T23:59:59.000Z

    Biology is a technology for processing information, materials, and energy. As a technology platform, biological systems provide access to artifacts and processes across a range of scales (e.g., the ribosome is a programmable ...

  7. www.emsl.pnnl.gov New Decade, New Tools, New Science: SyStemS biology

    E-Print Network [OSTI]

    , including high-throughput genomics, transcriptomics, proteomics, and metabolomics analyses as well as high

  8. NATIONAL CENTRE FOR BIOLOGICAL SCIENCES Annual Maintenance Contract for Electrical Systems in

    E-Print Network [OSTI]

    Udgaonkar, Jayant B.

    substations in NCBS Campus, GKVK Bangalore. 2. ESTIMATE VALUE PUT TO TENDER : Rs.62.29 Lakhs 3. EARNEST MONEY DEPOSIT : Rs.1,24,582.00 4. COST OF TENDER DOCUMENT : Rs. 500/- 5. SALE PERIOD : 12/12/2013 TO 20:________________DATE:____________ __________________________________ FOR A SUM OF RS. ________________ TOWARDS __________________________________THE COST OF TENDER DOCUMENT

  9. Protein-Folding Landscapes in Multi-Chain Systems Major Classification: Biological Sciences

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645 3,625 1,006 492 742EnergyOnItem Not Found Item Not Foundenhancer activity than histone30518theProtein-Folding

  10. A quantitative framework For large-scale model estimation and discrimination In systems biology

    E-Print Network [OSTI]

    Eydgahi, Hoda

    2013-01-01T23:59:59.000Z

    Using models to simulate and analyze biological networks requires principled approaches to parameter estimation and model discrimination. We use Bayesian and Monte Carlo methods to recover the full probability distributions ...

  11. Development and evaluation of a lignite-stillage carrier system for application and study of biological control agents 

    E-Print Network [OSTI]

    Jones, Richard Worth

    1983-01-01T23:59:59.000Z

    Approved as to style and content by: (Chairman of Committee) (Member) (Member) (Head of Department) December 1983 ABSTRACT Development and Evaluation of a Lignite-Sti liege Carrier System for Application and Study of Biological Agents. (December 1983.... The carrier system consisted of lignite granules amended with thin liquid sti llage. This carrier system supported fungal propagule production as high as 2. 0 x 10g propagules/g carrier. Thin liquid sti llage supported the production of 4. 0-4. 5 mg of g...

  12. Information & Computer Sciences Mathematics

    E-Print Network [OSTI]

    COLLEGE NATURAL SCIENCES OF OVERVIEW 2014 NAT SCI Biology Botany Chemistry Information & Computer 8 Department of Information & Computer Sciences 9 Department of Mathematics 12 PROGRAMS 14 Library & Information Science

  13. Computer Science and Computer Information Systems Faculty: M. Branton, H. ElAarag, D. Plante, H. Pulapaka

    E-Print Network [OSTI]

    Miles, Will

    Computer Science and Computer Information Systems Faculty: M. Branton, H. ElAarag, D. Plante, H. Pulapaka The computer science major at Stetson University provides students a flexible curriculum where they can concentrate in one of two defined degree tracks, Computer Science and Computer Information Systems

  14. Cuddy, et al.: EOS MLS Science Data Processing System for IEEE TGRS special issue on Aura 1 EOS MLS Science Data Processing System: A

    E-Print Network [OSTI]

    . The Science Investigator-led Processing System is developed and operated by Raytheon Information Technology Administration. Work at Raytheon was done under a contract with Jet Propulsion Laboratory. D. T. Cuddy.t.cuddy@jpl.nasa.gov). M. D. Echeverri and A. T. Hanzel are with Raytheon Information Technology and Scientific Services

  15. UC Davis Minors in Energy: Energy Science and Technology Minor (EEST) Offered by the Department of Biological and Agricultural Engineering

    E-Print Network [OSTI]

    Schladow, S. Geoffrey

    . Clean-tech and green-tech markets including energy are some of the fastest growing of new investment1 UC Davis Minors in Energy: Energy Science and Technology Minor (EEST) Offered by the Department There is an urgent need to develop and commercialize technologies for the sustainable conversion and use of energy

  16. Designing Effective Knowledge Management Systems for Scholars and (Science)

    E-Print Network [OSTI]

    Menczer, Filippo

    on brain can mange Leonardo Da Vinci (1452-1519) #12;3 20th Century: One person can make major contribute Amount of knowledge on brain can mange 21th Century: One person can make major contributions mange #12;4 21th Century: One person can make major contributions to a specific area of science Mankind

  17. Experimental nonlinear laser systems: Bigger data for better science?

    SciTech Connect (OSTI)

    Kane, D. M.; Toomey, J. P.; McMahon, C.; Noblet, Y. [MQ Photonics Research Centre, Department of Physics and Astronomy, Macquarie University ~ Sydney, NSW 2109 (Australia); Argyris, A.; Syvridis, D. [Department of Informatics and Telecommunications, National and Kapodistrian University of Athens, Panepistimiopolis, Ilisia, 15784 (Greece)

    2014-10-06T23:59:59.000Z

    Bigger data is supporting knowledge discovery in nonlinear laser systems as will be demonstrated with examples from three semiconductor laser based systems – one with optical feedback, a photonic integrated circuit (PIC) chaotic laser and a frequency shifted feedback laser system.

  18. TIFR Centre for Interdisciplinary Sciences, Narsingi, Hyderabad 500075

    E-Print Network [OSTI]

    Shyamasundar, R.K.

    -resolution crystallographic studies on organic small and biological macromolecular systems Dr. Parthapratim Munshi Neutron Scattering Science Directorate, Biology and Soft Mater Division Oak Ridge National Laboratory, Oak Ridge, TN with complementary neutron diffraction technique, when both performed at high-resolution. While neutron diffraction

  19. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level:Energy: Grid Integration Redefining What's PossibleRadiationImplementingnpitcheResearch BriefsTenney, Office of Science Office of Science β

  20. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level:Energy: Grid Integration Redefining What's PossibleRadiationImplementingnpitcheResearch BriefsTenney, Office of Science Office of Science

  1. The Nuclear Science References (NSR) Database and Web Retrieval System

    E-Print Network [OSTI]

    Pritychenko, B; Kellett, M A; Singh, B; Totans, J

    2011-01-01T23:59:59.000Z

    The Nuclear Science References (NSR) database, and associated Web inter- face, is the world's only comprehensive source of easily accessible low- and intermediate-energy nuclear physics bibliographic information for more than 200,000 articles since the beginning of nuclear science. The weekly-updated NSR database provides essential support for nuclear data evaluation, com- pilation and research activities. The principles of the database and Web application development and maintenance are described. Examples of nuclear structure, reaction and decay applications are specifically included. The complete NSR database is freely available at the websites of the National Nuclear Data Center http://www.nndc.bnl.gov/nsr and the International Atomic Energy Agency http://www-nds.iaea.org/nsr.

  2. Computational Biology & Bioinformatics

    E-Print Network [OSTI]

    Johnson, Marcia K.

    Computational Biology & Bioinformatics at Yale An Interdepartmental PhD Program and a Track within://www.yale.edu/graduateschool/admissions/apply_online.html 2 #12;Introduction Computational Biology and Bioinformatics (CBB) is a rapidly developing multi experimentation. Computational and theoretical approaches to understanding biological systems provide an essential

  3. Computational Biology & Bioinformatics

    E-Print Network [OSTI]

    Computational Biology & Bioinformatics at Yale An Interdepartmental PhD Program and a Track within://www.yale.edu/graduateschool/admissions/apply_online.html #12;3 Introduction Computational Biology and Bioinformatics (CBB) is a rapidly developing multi experimentation. Computational and theoretical approaches to understanding biological systems provide an essential

  4. Purdue AgronomyPurdue AgronomyCROP, SOIL, AND ENVIRONMENTAL SCIENCES Septic System Additives

    E-Print Network [OSTI]

    Holland, Jeffrey

    wastewater. Soil provides the final stage in treatment. It must effectively treat wastewater effluent through chemical, physical, and biological processes. -- Chemical treatment in the soil involves the interactions System Additives--HENV-13-W 2 -- Physical treatment of wastewater in the soil relies on the soil fabric

  5. Roadmap: Integrated Health Studies Health Care Administration and Systems -Bachelor of Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Integrated Health Studies ­ Health Care Administration and Systems - Bachelor of Science Year: 2012­2013 Page 1 of 2 | Last Updated: 7-Nov-12/JS This roadmap is a recommended semester if not satisfied earlier #12;Roadmap: Integrated Health Studies ­ Health Care Administration and Systems - Bachelor

  6. Science Expo 2014: Brief Activity Descriptions Earth Systems and Geology Activities

    E-Print Network [OSTI]

    Schladow, S. Geoffrey

    this process. 5. Birdseed Mining: Students "mine" for beads and seeds within a birdseed mixture to learn about models demonstrate the magnetic field, paired with Tahoe Institute for Natural Science activity on birds seasons. 30. Pocket Solar System: Students create a scale model of the solar system with a meter of paper

  7. Natural Hazards and Earth System Sciences (2001) 1: 4351 c European Geophysical Society 2001 Natural Hazards

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    2001-01-01T23:59:59.000Z

    that the electromagnetic wave monitor- ing system has the potential to monitor and/or warn of vol- canic activity as a field trial for monitoring volcanic activities through the use of the electromagnetic method. Up Natural Hazards and Earth System Sciences Electromagnetic-wave radiation due to diastrophism of magma dike

  8. Cloud Computing and Distributed Systems Laboratory DEPT. OF COMPUTER SCIENCE AND SOFTWARE ENGINEERING

    E-Print Network [OSTI]

    Melbourne, University of

    Cloud Computing and Distributed Systems Laboratory DEPT. OF COMPUTER SCIENCE AND SOFTWARE ENGINEERING THE UNIVERSITY OF MELBOURNE, AUSTRALIA The Cloud Computing and Distributed Systems (CLOUDS in 2008 by the CLOUDS lab at the University of Melbourne, facilitates the realization of the above vision

  9. MIT and Marine Systems and Ocean Science & Engineering MIT Industry Brief

    E-Print Network [OSTI]

    Ceder, Gerbrand

    ; shipping and transportation; ocean energy; ocean acoustics; the role of the ocean in the global environmentMIT and Marine Systems and Ocean Science & Engineering MIT Industry Brief MIT's Industrial Liaison of Technology (MIT) is a leading center of research and education on topics related to marine systems, and ocean

  10. A recent study of meteorological conditions around the Pentagon will support development of a system to protect its 25,000+ occupants from chemical, biological, and radiological attack.

    E-Print Network [OSTI]

    Knievel, Jason Clark

    of a system to protect its 25,000+ occupants from chemical, biological, and radiological attack. I nFEBRUARY 2007AMERICAN METEOROLOGICAL SOCIETY | #12;of the most likely targets for a future terrorist attack

  11. Department of Plant Systems Biology, Flanders Institute for Biotechnology (VIB) and Department of Plant Biotechnology and Genetics, Ghent University, Gent, Belgium.

    E-Print Network [OSTI]

    Cai, Long

    Department of Plant Systems Biology, Flanders Institute for Biotechnology (VIB) and Department of Plant Biotechnology and Genetics, Ghent University, Gent, Belgium. Correspondence should be addressed or rapidly escape from adverse environmental situations. To overcome these restrictions, plants have evolved

  12. Collaborative Research: Focusing Attention to Improve the Performance of Citizen Science Systems -Beautiful Images and Perceptive Observers

    E-Print Network [OSTI]

    Crowston, Kevin

    Collaborative Research: Focusing Attention to Improve the Performance of Citizen Science Systems unable to replicate the successes of human pattern recognition. The growth of citizen science on the web-computational citizen science platform that combines the efforts of human classifiers with those of computational

  13. Intercomparison of mesoscale meteorological models for precipitation forecasting Hydrology and Earth System Sciences, 7(6), 799811 (2003) EGU

    E-Print Network [OSTI]

    Boyer, Edmond

    2003-01-01T23:59:59.000Z

    Intercomparison of mesoscale meteorological models for precipitation forecasting 799 Hydrology and Earth System Sciences, 7(6), 799811 (2003) © EGU Intercomparison of mesoscale meteorological models

  14. applied materials science: Topics by E-print Network

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    applied in chemical or materials sciences, physics, biology, psychology, applied maths, engineering - anything science brings clear benefits to: researchers (developing...

  15. agricultural knowledge science: Topics by E-print Network

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Sciences Agricultural Economics Marine industry studies Corporate social Materials Science Plasma Physics Toxicology Aquatic ecosystems 12;Engineering Biological...

  16. Behavioral Sciences | ornl.gov

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Chemistry Computational Engineering Computer Science Data Earth Sciences Energy Science Future Technology Knowledge Discovery Materials Mathematics National Security Systems...

  17. Growth control of the eukaryote cell: A systems biology study in yeast

    E-Print Network [OSTI]

    Castrillo, Juan I; Zeef, Leo A; Hoyle, David C; Zhang, Nianshu; Hayes, Andrew; Gardner, David C J; Cornell, Michael J; Petty, June; Hakes, Luke; Wardleworth, Leanne; Rash, Bharat; Brown, Marie; Dunn, Warwick B; Broadhurst, David; O'Donoghue, Kerry; Hester, Svenja S; Dunkley, Tom P J; Hart, Sarah; Swainston, Neil; Li, Peter; Gaskell, Simon J; Paton, Norman W; Lilley, Kathryn S; Kell, Douglas B; Oliver, Stephen G

    2007-04-30T23:59:59.000Z

    -line. At appropriate intervals, culture samples were collected for determination of biomass concentration. Biomass levels were monitored both spectrophotometrically at a wavelength of 600 nm, and by dry weight. Dry weight measurements were determined as described... , corresponding to the biological process: tRNA aminoacylation for protein translation (GO tool: GenMAPP). Colour code as in Fig. S17. Fig. S20. Storage vacuole. Groups of genes significantly up-regulated and down-regulated corresponding to the cellular...

  18. December 17, 2012 TO: Department Chairs in the College of Engineering, Biological Systems Engineering,

    E-Print Network [OSTI]

    Sheridan, Jennifer

    Engineering, Chemistry, Computer Sciences, Geoscience, Mathematics, Physics, and Statistics Dean's Office technology · Positive impact on student learning · Contribution to the College of Engineering goals environment to direct student engagement in a consultative mode. College of Engineering Office of the Dean

  19. Sequential Monte Carlo in Model Comparison: Example in Cellular Dynamics in Systems Biology

    E-Print Network [OSTI]

    Richardson, David

    : American Statistical Association (2009): 1274-1287. Abstract Sequential Monte Carlo analysis of time series. Mukherjee L. You M. West -- Published in: JSM Proceedings/Bayesian Statistical Science. Alexandria, VA statistical model assessment is really just beginning in this new field. Single cell time series data

  20. Cryoelectron Microscopy as a Functional Instrument for Systems Biology, Structural Analysis & Experimental Manipulations with Living Cells. A comprehensive review of the current works

    E-Print Network [OSTI]

    Gradov, Oleg V

    2015-01-01T23:59:59.000Z

    The aim of this paper is to give an introductory review of the cryoelectron microscopy as a complex data source for the most of the system biology branches, including the most perspective non-local approaches known as "localomics" and "dynamomics". A brief summary of various cryoelectron mi-croscopy methods and corresponding system biological ap-proaches is given in the text. The above classification can be considered as a useful framework for the primary comprehen-sions about cryoelectron microscopy aims and instrumental tools. We do not discuss any of these concepts in details, but merely point out that their methodological complexity follows only from the structure-functional complexity of biological systems which are investigated in this manner. We also postu-late that one can employ some of the cryoelectron microscopic techniques not only for observation, but also for modification and structural refunctionalization of some biological and similar soft matter objects and microscopic samples. In other world...

  1. NARSTO Quality Systems Science Center 2004-2005 Annual Report

    E-Print Network [OSTI]

    Laboratory (ORNL). ORNL is managed by UT-Battelle, LLC, for the U.S. Department of Energy under contract DE Project Records DM-19 Day-to-Day Operation of Data Management Systems DM-18 > Data Systems Management-12, 2005 ORNL research was sponsored by the U.S. Department of Energy and performed at Oak Ridge National

  2. Call for Papers Elsevier Journal of Computer and System Sciences

    E-Print Network [OSTI]

    Chu, Xiaowen

    at the 14th IEEE International Conference on High Performance Computing and Communications (HPCC-2012 and an ever-increasing demand for practice of high performance computing systems, due to the rapid growth in computing and communications technology. High performance computing systems has moved into the mainstream

  3. Integrative Biology Keith A. Crandall, Chair

    E-Print Network [OSTI]

    Hart, Gus

    . The bioinformatics major is for students with interests in both the computer and the biological sciences. The degree merges these interests in the areas of bioinformatics and computational biology, giving students Programs and Degrees BS Bioinformatics BS Biology Composite Teaching BS Integrative Biology Students should

  4. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645U.S. DOE Office of ScienceandMesa del Sol HomeFacebook Twitter Principalfuel cells" Find + AdvancedSign InBiological

  5. 46 College of Arts and Sciences COLLEGE OF ARTS AND SCIENCES

    E-Print Network [OSTI]

    Xie,Jiang (Linda)

    ; Chemistry; Communication Studies; Criminal Justice; Dance and Theatre; English; Geography and Earth Sciences, American Studies, Anthropology, Biology, Biotechnology, Chemistry, Cognitive Science, Communication Studies in Applied Physics, Biology, Chemistry, Criminal Justice, Earth Sciences, Mathematics (with concentrations

  6. Noah A. Rosenberg Department of Biology

    E-Print Network [OSTI]

    Rosenberg, Noah

    , Life Sciences Institute and Center for Computational Medicine & Bioinformatics, University of Michigan Education 2001-2005 University of Southern California, Postdoc, Molecular and Computational Biology 1998, BMC Bioinformatics 2010- Editorial Board Member, Human Biology 2010- Associate Editor, Genetics 2009

  7. Putting in perspective human-machine system theory and modeling: from theoretical biology to artifacts

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    there is a strong need of reliability and consistency from modeling, development and life cycle systems. A main and organization from human-machine systems to socio- technical systems especially for safety and life critical methodologies and ergonomics of systems design. Current and future technical developments for enhancing human

  8. Crafting life : a sensory ethnography of fabricated biologies

    E-Print Network [OSTI]

    Roosth, Hannah Sophia

    2010-01-01T23:59:59.000Z

    This ethnography tracks a diverse set of practices I term "constructive biologies," by which I mean efforts in the post-genomic life sciences to understand how biology works by making new biological things. I examine five ...

  9. Biology and Medicine Division annual report, 1987

    SciTech Connect (OSTI)

    Not Available

    1988-04-01T23:59:59.000Z

    Modern biology is characterized by rapid change. The development of new tools and the results derived from their application to various biological systems require significant shifts in our concepts and the strategies that are adopted to analyze and elucidate mechanisms. In parallel with exciting new scientific developments our organizational structure and programmatic emphases have altered. These changes and developments have enabled the life sciences at LBL to be better positioned to create and respond to new opportunities. The work summarized in this annual report reflects a vital multifaceted research program that is in the vanguard of the areas represented. We are committed to justifying the confidence expressed by LBL through the new mission statement and reorganizational changes designed to give greater prominence to the life sciences.

  10. The Rutgers University Coastal Ocean Observation Lab, a unit of the School of Environmental and Biological Sciences,

    E-Print Network [OSTI]

    Goodman, Robert M.

    Observing System (IOOS). This partnership, as well as others with entities around the world, place R.U. COOL sampling of the coastal ocean is accomplished through: (1) the acquisition of data streams from U an on-campus operations center, providing an unprecedented view of the coastal ocean. Developing New

  11. Life sciences

    SciTech Connect (OSTI)

    Day, L. (ed.)

    1991-04-01T23:59:59.000Z

    This document is the 1989--1990 Annual Report for the Life Sciences Divisions of the University of California/Lawrence Berkeley Laboratory. Specific progress reports are included for the Cell and Molecular Biology Division, the Research Medicine and Radiation Biophysics Division (including the Advanced Light Source Life Sciences Center), and the Chemical Biodynamics Division. 450 refs., 46 figs. (MHB)

  12. Plant Species Biology (2003) 18, 123127 2003 The Society for the Study of Species Biology

    E-Print Network [OSTI]

    Tomimatsu,, Hiroshi

    2003-01-01T23:59:59.000Z

    and Genetics, Graduate School of Environmental Earth Science, Hokkaido University, Sapporo 060-0810, JapanPlant Species Biology (2003) 18, 123­127 © 2003 The Society for the Study of Species Biology Blackwell Science, LtdOxford, UKPSBPlant Species Biology1442-1984The Society for the Study of Species

  13. Clay: A Type-Safe Systems Programming Language Bucknell Computer Science Technical Report #08-1

    E-Print Network [OSTI]

    Wittie, Lea

    Clay: A Type-Safe Systems Programming Language Bucknell Computer Science Technical Report #08-1 Lea Wittie March 12, 2008 1 Introduction The Clay programming language is a type-safe variant of C, arithmetic constraints in function pre and post conditions, polymorphism, and type inference. Clay is able

  14. Andy Bullock and Mike Acreman Hydrology and Earth System Sciences, 7(3), 358389 (2003) EGU

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Andy Bullock and Mike Acreman 358 Hydrology and Earth System Sciences, 7(3), 358389 (2003) © EGU The role of wetlands in the hydrological cycle Andy Bullock1 and Mike Acreman2 1 Independent Consultant, Ledbury, Herefordshire, HR8 2DX, UK 2 Centre for Ecology and Hydrology, Wallingford, Oxon. OX10 8BB, UK

  15. Franois Anctil and Nicolas Lauzon Hydrology and Earth System Sciences, 8(5), 940958 (2004) EGU

    E-Print Network [OSTI]

    Boyer, Edmond

    François Anctil and Nicolas Lauzon 940 Hydrology and Earth System Sciences, 8(5), 940958 (2004.lauzon@golder.com Abstract Since the 1990s, neural networks have been applied to many studies in hydrology and water and stacking having been applied regularly in hydrology and water resources for some years, while Bayesian

  16. Bettina Ott and Stefan Uhlenbrook Hydrology and Earth System Sciences, 8(1), 6278 (2004) EGU

    E-Print Network [OSTI]

    Boyer, Edmond

    Bettina Ott and Stefan Uhlenbrook 62 Hydrology and Earth System Sciences, 8(1), 6278 (2004) © EGU, Wasserwirtschaftsamt Bamberg, Kasernstra�e 4, 96047 Bamberg, Germany 2 University of Freiburg, Institute of Hydrology, Fahnenbergplatz, D-79098 Freiburg, Germany E-mail for corresponding author: stefan.uhlenbro@hydrology

  17. Mira Kobold and Kay Suelj Hydrology and Earth System Sciences, 9(4), 322332 (2005) EGU

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Mira Kobold and Kay Suelj 322 Hydrology and Earth System Sciences, 9(4), 322332 (2005) © EGU Precipitation forecasts and their uncertainty as input into hydrological models Mira Kobold and Kay Suelj the weather forecasts with the information on catchment conditions and a hydrological forecasting model can

  18. Roadmap: Integrated Health Studies Health Care Administration and Systems -Bachelor of Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Integrated Health Studies ­ Health Care Administration and Systems - Bachelor of Science Hours] ECON 42086 Economics of Health Care 3 Offered in fall only MIS 24163 Principles of Management 3 and Health Care (3) 3 Prerequisite: SOC 12050 General Electives (lower or upper division) 6 Semester Seven

  19. Transportation Planning & Decision Science Group Transportation Systems Research Group Diane Davidson Keith Kahl

    E-Print Network [OSTI]

    Transportation Planning & Decision Science Group Transportation Systems Research Group Diane Davidson Keith Kahl 865-946-1475 865-946-1236 Center for Transportation Analysis News Oak Ridge National to members of the Kentucky Transportation Cabinet and the Kentucky Transportation Center. The purpose

  20. Transportation Planning & Decision Science Group Transportation Systems Research Group Diane Davidson Keith Kahl

    E-Print Network [OSTI]

    Transportation Planning & Decision Science Group Transportation Systems Research Group Diane Davidson Keith Kahl 865-946-1475 865-946-1236 Center for Transportation Analysis News Oak Ridge National, during the Chairman's Luncheon at the 92nd Annual Transportation Research Board (TRB) Meeting

  1. Graduate School of Life Science and Systems Engineering School of Engineering

    E-Print Network [OSTI]

    Kourai, Kenichi

    Department of Civil and Architectural Engineering Architecture Course Civil and Environmental Engineering4 5 Graduate School of Life Science and Systems Engineering 1st Year School of Engineering Department of Mechanical and Control Engineering 2nd Year 3rd Year 4th Year 1st Year of Master's Program 1st

  2. Presented at the 34th Annual Hawaii Conference on Systems Sciences, January 3-6 ,2001

    E-Print Network [OSTI]

    company, and the Long Island Power Authority (LIPA) serves customers on the island through itsPresented at the 34th Annual Hawaii Conference on Systems Sciences, January 3-6 ,2001 "Electricity Since electricity, and its reliable provision on command, is a multi-attribute commodity, it should

  3. The fate of Earth's ocean Hydrology and Earth System Sciences, 5(4), 569575 (2001) EGS

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    The fate of Earth's ocean 569 Hydrology and Earth System Sciences, 5(4), 569­575 (2001) © EGS The fate of Earth's ocean Christine Bounama, Siegfried Franck and Werner von Bloh Potsdam Institute@pik-potsdam.de Abstract Questions of how water arrived on the Earth's surface, how much water is contained in the Earth

  4. System Problem Detection by Mining Console Logs Electrical Engineering and Computer Sciences

    E-Print Network [OSTI]

    Xu, Wei

    for mining console logs using a combination of program analysis, information retrieval, data mining logs. We then extract features, such as execution traces, from logs and use data mining and machineSystem Problem Detection by Mining Console Logs Wei Xu Electrical Engineering and Computer Sciences

  5. Mining Logs Files for Data-Driven System Management School of Computer Science

    E-Print Network [OSTI]

    Li, Tao

    Mining Logs Files for Data-Driven System Management Wei Peng School of Computer Science Florida of the log files have been less emphasized in existing methods from data mining and machine learning in data representation pose new challenges. In this paper, we will describe our research efforts on mining

  6. Robotics and Autonomous Systems ( ) Contents lists available at SciVerse ScienceDirect

    E-Print Network [OSTI]

    Siena, Universitŕ di

    hand, the Robonaut hand, and the human hand model. In [3] authors proposed a robotic hand design able@dii.unisi.it (M. Malvezzi). Hand II. In [6] the mapping between the human hand and the robotic hand synergiesRobotics and Autonomous Systems ( ) ­ Contents lists available at SciVerse ScienceDirect Robotics

  7. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645U.S. DOE Office of ScienceandMesa del Sol HomeFacebook Twitter Principalfuel cells" Find + AdvancedSignScience

  8. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645 3,625 1,006 492 742EnergyOnItemResearch > TheNuclearHomeland Science Stockpile Stewardship National Security

  9. Hydrology and Earth System Sciences, 10, 3148, 2006 www.copernicus.org/EGU/hess/hess/10/31/

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Hydrology and Earth System Sciences, 10, 31­48, 2006 www.copernicus.org/EGU/hess/hess/10/31/ SRef-ID: 1607-7938/hess/2006-10-31 European Geosciences Union Hydrology and Earth System Sciences Transport International Centre for Hydrology "Dino Tonini" and Dipartimento IMAGE, Universit`a di Padova, via Loredan 20

  10. Hydrology and Earth System Sciences, 9, 111126, 2005 www.copernicus.org/EGU/hess/hess/9/111/

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Hydrology and Earth System Sciences, 9, 111­126, 2005 www.copernicus.org/EGU/hess/hess/9/111/ SRef-ID: 1607-7938/hess/2005-9-111 European Geosciences Union Hydrology and Earth System Sciences Constraints of artificial neural networks for rainfall-runoff modelling: trade-offs in hydrological state representation

  11. Hydrology and Earth System Sciences, 10, 1929, 2006 www.copernicus.org/EGU/hess/hess/10/19/

    E-Print Network [OSTI]

    Boyer, Edmond

    Hydrology and Earth System Sciences, 10, 19­29, 2006 www.copernicus.org/EGU/hess/hess/10/19/ SRef-ID: 1607-7938/hess/2006-10-19 European Geosciences Union Hydrology and Earth System Sciences Transport. Marani International Centre for Hydrology "Dino Tonini" and Dipartimento IMAGE, Universit`a di Padova

  12. Hydrology and Earth System Sciences, 9, 139155, 2005 www.copernicus.org/EGU/hess/hess/9/139/

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Hydrology and Earth System Sciences, 9, 139­155, 2005 www.copernicus.org/EGU/hess/hess/9/139/ SRef-ID: 1607-7938/hess/2005-9-139 European Geosciences Union Hydrology and Earth System Sciences Using stable isotope tracers to assess hydrological flow paths, residence times and landscape influences in a nested

  13. Hydrology and Earth System Sciences, 9, 95109, 2005 www.copernicus.org/EGU/hess/hess/9/95/

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Hydrology and Earth System Sciences, 9, 95­109, 2005 www.copernicus.org/EGU/hess/hess/9/95/ SRef-ID: 1607-7938/hess/2005-9-95 European Geosciences Union Hydrology and Earth System Sciences A conceptual glacio-hydrological model for high mountainous catchments B. Schaefli, B. Hingray, M. Niggli, and A. Musy

  14. Generating Climbing Plants Using L-Systems Master of Science Thesis in the Programme Software Engineering and

    E-Print Network [OSTI]

    Assarsson, Ulf

    Generating Climbing Plants Using L-Systems Master of Science Thesis in the Programme Software Generating Climbing Plants Using L-Systems Johan Knutzen © Johan Knutzen Examiner: Ulf Assarsson Department Plants . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14 3 Generating Climbing

  15. Abdou-Arbi et al. BMC Systems Biology 2014, 8:8 http://www.biomedcentral.com/1752-0509/8/8

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Abdou-Arbi et al. BMC Systems Biology 2014, 8:8 http://www.biomedcentral.com/1752 study of precursor sets for system outputs Oumarou Abdou-Arbi1,2,3, Sophie Lemosquet4,5, Jaap Van Milgen information [2]. With a complementary approach, one © 2014 Abdou-Arbi et al.; licensee BioMed Central Ltd

  16. Synthetic biology and crop engineering

    Broader source: Energy.gov [DOE]

    Breakout Session 2: Frontiers and Horizons Session 2-A: Synthetic Biology and the Promise of Biofuels Jonathan Burbaum, Program Director, Department of Energy, Office of Science, ARPA–E

  17. Chemistry Division Department of Biological

    E-Print Network [OSTI]

    Heller, Barbara

    1 Chemistry Division Department of Biological and Chemical Sciences, Illinois Institute-13 Chemistry Division invites nominations for Kilpatrick Fellowship for the academic year 2012's Chemistry Department from 1947­1960. Mary Kilpatrick was a chemistry faculty member from 1947

  18. The Departments of Biological Sciences and Geography jointly offer instruction leading to a post-diploma major in Environmental Science.This program is directed toward graduates of the Lethbridge College, or

    E-Print Network [OSTI]

    Seldin, Jonathan P.

    -diploma major in Environmental Science.This program is directed toward graduates of the Lethbridge College College Natural Resources Technology Douglas College Associate in Science Degree (Environmental Science Technology Post-DiplomaBachelorofScience EnvironmentalScience Calendar Year: 2007/2008 Faculty: Arts

  19. The Departments of Biological Sciences and Geography jointly offer instruction leading to a post-diploma major in Environmental Science. This program is directed toward graduates of Lethbridge College, or

    E-Print Network [OSTI]

    Seldin, Jonathan P.

    -diploma major in Environmental Science. This program is directed toward graduates of Lethbridge College College Natural Resources Technology Douglas College Associate in Science Degree (Environmental Science Technology Post-DiplomaBachelorofScience EnvironmentalScience Calendar Year: 2008/2009 Faculty: Arts

  20. biology | EMSL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Molecular Science Computing Facility: Quiet Wing Science Theme: Biosystem Dynamics & Design Terrestrial & Subsurface Ecosystems Energy Materials & Processes Atmospheric...

  1. Molecular Science Computing | EMSL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Scientific Capabilities Molecular Science Computing Overview Cell Isolation and Systems Analysis Deposition and Microfabrication Mass Spectrometry Microscopy Molecular Science...

  2. Computer Science & Engineering

    E-Print Network [OSTI]

    Weiblen, George D

    Computer Science & Engineering at the University of Minnesota Yearsof excellence 40 Department the department head history of the computer science & engineering department Timeline Faculty Awards Software & project highlights Architectures & Compilers Bioinformatics & Computational Biology Data Mining, Databases

  3. Quantum metrology and its application in biology

    E-Print Network [OSTI]

    Michael A. Taylor; Warwick P. Bowen

    2014-09-03T23:59:59.000Z

    Quantum metrology provides a route to overcome practical limits in sensing devices. It holds particular relevance in biology, where sensitivity and resolution constraints restrict applications both in fundamental biophysics and in medicine. Here, we review quantum metrology from this biological context. The understanding of quantum mechanics developed over the past century has already enabled important applications in biology, including positron emission tomography (PET) with entangled photons, magnetic resonance imaging (MRI) using nuclear magnetic resonance, and bio-magnetic imaging with superconducting quantum interference devices (SQUIDs). With the birth of quantum information science came the realization that an even greater range of applications arise from the ability to not just understand, but to engineer coherence and correlations in systems at the quantum level. In quantum metrology, quantum coherence and quantum correlations are engineered to enable new approaches to sensing. This review focusses specifically on optical quantum metrology, where states of light that exhibit non-classical photon correlations are used to overcome practical and fundamental constraints, such as the shot-noise and diffraction limits. Recent experiments have demonstrated quantum enhanced sensing of biological systems, and established the potential for quantum metrology in biophysical research. These experiments have achieved capabilities that may be of significant practical benefit, including enhanced sensitivity and resolution, immunity to imaging artifacts, and characterisation of the biological response to light at the single-photon level. New quantum measurement techniques offer even greater promise, raising the prospect for improved multi-photon microscopy and magnetic imaging, among many other possible applications.

  4. School of Mathematical & Computer Sciences Dept of Computer Science

    E-Print Network [OSTI]

    Painter, Kevin

    School of Mathematical & Computer Sciences Dept of Computer Science BSc Computer Systems Programme & Computer Sciences Dept of Computer Science BSc Computer Systems Programme Handbook 2014 Watt University .......................................................................................................6 School of Mathematical and Computer Sciences

  5. Eco-Hydro-Climate Science/Engineering in SESE Definition: An emerging frontier in Earth system science is the interaction of ecological,

    E-Print Network [OSTI]

    Rhoads, James

    Eco-Hydro-Climate Science/Engineering in SESE Definition: An emerging frontier in Earth system that are `retooled' to treat the coupled eco-hydro-climate system. Arid and semiarid regions (deserts) are a fruitful Southwest is thus an ideal laboratory for eco-hydro-climate studies and provides several case studies

  6. Biological and Environmental

    E-Print Network [OSTI]

    and sustainable biofuel but will also advance our understanding in areas of fundamental biological science. After capitalize on recent technological and scientific advances. Several multidisciplinary projects of key,ecosystemmonitoringandrestoration,combiningcropresearchandmicrobial engineering to make biofuels a viable alternative to fossil fuels, and personalized medicine to improve health

  7. Biological and Environmental Research

    E-Print Network [OSTI]

    recalcitrance. Using an integrated approach to solving the challenge of producing biofuel from cellulosic materials, the center will not only provide the scientific basis for affordable and sustainable biofuel but will also advance our understanding in areas of fundamental biological science. BESC researchers have

  8. Purdue extension Agricultural&Biological

    E-Print Network [OSTI]

    for an extended period and encourage biological treatment to minimize organic matter (BOD), nitrogenPurdue extension Don Jones Agricultural&Biological Engineering Alan Sutton AnimalSciences Purdue structures must be designed and managed to contain manure, wastewater, contaminated runoff, and ma- nure

  9. Master of Science in Bioinformatics Plan of Study (prior to Fall 2012)

    E-Print Network [OSTI]

    Zhou, Yaoqi

    .) INFO-B 619 Structural Bioinformatics (3 cr.) INFO-B 646 Computational System Biology (3 cr.) INFO to Informatics (3 cr.) INFO-B 519 Introduction to Bioinformatics (3 cr.) INFO-B 556 Biological DatabaseMaster of Science in Bioinformatics Plan of Study (prior to Fall 2012) Note: these requirements

  10. Climate & Environmental Sciences | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Climate Change Science Institute Earth and Aquatic Sciences Ecosystem Science Environmental Data Science and Systems Energy-Water Resource Systems Human Health Risk and...

  11. Cryoelectron Microscopy as a Functional Instrument for Systems Biology, Structural Analysis & Experimental Manipulations with Living Cells. A comprehensive review of the current works

    E-Print Network [OSTI]

    Oleg V. Gradov; Margaret A. Gradova

    2015-01-18T23:59:59.000Z

    The aim of this paper is to give an introductory review of the cryoelectron microscopy as a complex data source for the most of the system biology branches, including the most perspective non-local approaches known as "localomics" and "dynamomics". A brief summary of various cryoelectron mi-croscopy methods and corresponding system biological ap-proaches is given in the text. The above classification can be considered as a useful framework for the primary comprehen-sions about cryoelectron microscopy aims and instrumental tools. We do not discuss any of these concepts in details, but merely point out that their methodological complexity follows only from the structure-functional complexity of biological systems which are investigated in this manner. We also postu-late that one can employ some of the cryoelectron microscopic techniques not only for observation, but also for modification and structural refunctionalization of some biological and similar soft matter objects and microscopic samples. In other worlds, we start with the cryoelectron microscopy as a tool for the sys-tem biology and progress to its applying as an instrument for system biology and functional biomimetics; i.e. "system cryobi-ology" goes over into "synthetic cryobiology" or "cryogenic biomimetics". All these conclusions can be deduced from the most recent works of the latest years, including just submitted foreign papers. This article provides an up-to-date description of the conceptual basis for the novel view on the computational cryoelectron microscopy (in silico) approaches and the data mining principles which lie at the very foundation of modern structural analysis and reconstruction.

  12. New Opportunities for Outer Solar System Science using Radioisotope Electric Propulsion

    SciTech Connect (OSTI)

    Noble, Robert J.; /SLAC; Amini, Rashied; Beauchamp, Patricia M.; /Caltech, JPL; Bennett, Gary L.; /Metaspace Enterprises; Brophy, John R.; Buratti, Bonnie J.; Ervin, Joan; /Caltech, JPL; Fernandez, Yan R.; /Central Florida U.; Grundy, Will; /Lowell Observ.; Khan, Mohammed Omair; /Caltech, JPL; King, David Q.; /Aerojet; Lang, Jared; /Caltech, JPL; Meech, Karen J.; /Hawaii U.; Newhouse, Alan; Oleson, Steven R.; Schmidt, George R.; /GRC; Spilker, Thomas; West, John L.; /Caltech, JPL; ,

    2010-05-26T23:59:59.000Z

    Today, our questions and hypotheses about the Solar System's origin have surpassed our ability to deliver scientific instruments to deep space. The moons of the outer planets, the Trojan and Centaur minor planets, the trans-Neptunian objects (TNO), and distant Kuiper Belt objects (KBO) hold a wealth of information about the primordial conditions that led to the formation of our Solar System. Robotic missions to these objects are needed to make the discoveries, but the lack of deep-space propulsion is impeding this science. Radioisotope electric propulsion (REP) will revolutionize the way we do deep-space planetary science with robotic vehicles, giving them unprecedented mobility. Radioisotope electric generators and lightweight ion thrusters are being developed today which will make possible REP systems with specific power in the range of 5 to 10 W/kg. Studies have shown that this specific power range is sufficient to perform fast rendezvous missions from Earth to the outer Solar System and fast sample return missions. This whitepaper discusses how mobility provided by REP opens up entirely new science opportunities for robotic missions to distant primitive bodies. We also give an overview of REP technology developments and the required next steps to realize REP.

  13. Faculty Expertise Index Advanced Artificial Intelligence, Technology, & Control Systems Development for Biological &

    E-Print Network [OSTI]

    Amin, S. Massoud

    Faculty Expertise Index Advanced Artificial Intelligence, Technology, & Control Systems Development-Paul Schirle-Keller Food Additives ­ Artificial Sweeteners ­ Ted Labuza Food Analysis Chromatographic Processing (see Phytochemicals, Advanced Artificial Intelligence) Canning Technology ­ Ted Labuza Cheese

  14. Biological and environmental efficiency of high producing dairy systems through application of life cycle analysis 

    E-Print Network [OSTI]

    Ross, Stephen Alexander

    2014-11-27T23:59:59.000Z

    Dairy production systems are an important global contributor to anthropogenic greenhouse gas (GHG) emissions including methane (CH4), nitrous oxide (N2O) and carbon dioxide (CO2). Due to the role GHG play in climate ...

  15. BSc Biological Sciences BSc Biomedical Sciences

    E-Print Network [OSTI]

    Wirosoetisno, Djoko

    population, healthy ageing, supplying sustainable energy, response to climate change and the conservation courses to places such as South Africa and Sweden, and on work placements. "I particularly enjoy my course

  16. UCL Science Library Biological Sciences Periodicals

    E-Print Network [OSTI]

    Crawford, Ian

    Shelving Hub Library Enquiries ISD Help Desk Computer Cluster Computer Cluster ENTRANCE Teaching Cluster Area Information Library Catalogues Self Service Lifts Toilets Fire Exits Shelving Hub Engineering

  17. Please cite this article in press as: Baumbach, J. et al., CoryneRegNet 3.0--An interactive systems biology plat-form for the analysis of gene regulatory networks in corynebacteria and Escherichia coli, J. Biotechnol. (2007),

    E-Print Network [OSTI]

    Babu, M. Madan

    2007-01-01T23:59:59.000Z

    Please cite this article in press as: Baumbach, J. et al., CoryneRegNet 3.0--An interactive systems of Biotechnology xxx (2007) xxx­xxx CoryneRegNet 3.0--An interactive systems biology platform for the analysis., CoryneRegNet 3.0--An interactive systems biology plat- form for the analysis of gene regulatory networks

  18. AGRICULTURAL AND BIOLOGICAL

    E-Print Network [OSTI]

    Gilbert, Matthew

    AGRICULTURAL AND BIOLOGICAL ENGINEERING UNDERGRADUATE PROGRAM Prepare... yourself for a career in integrating life and engineering for systems in agriculture, food, environment, and energy, and to contribute to the world's largest industry. COLLEGE OF ACES COLLEGE OF ENGINEERING #12;AGRICULTURAL AND BIOLOGICAL

  19. The Surface Energy Balance System (SEBS) for estimation of turbulent heat fluxes Hydrology and Earth System Sciences, 6(1), 8599 (2002) EGS

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    The Surface Energy Balance System (SEBS) for estimation of turbulent heat fluxes 85 Hydrology and Earth System Sciences, 6(1), 85­99 (2002) © EGS The Surface Energy Balance System (SEBS) for estimation, The Netherlands Email: B.su@Alterra.wag-ur.nl Abstract A Surface Energy Balance System (SEBS) is proposed

  20. Faculty of Science Computer Science

    E-Print Network [OSTI]

    Faculty of Science Computer Science Computer software engineering, network and system analysis.uwindsor.ca/computerscience The University of Windsor offers a variety of computer science programs to prepare students for a career in the technology industry or in research and academia. A computer science degree provides an in-depth understanding

  1. Faculty of Science Computer Science

    E-Print Network [OSTI]

    Faculty of Science Computer Science Software engineering, network and system analysis continue a variety of computer science programs to prepare students for a career in the technology industry or in research and academia. A computer science degree provides an in-depth understanding of the fundamentals

  2. UBC Social Ecological Economic Development Studies (SEEDS) Student Report Agricultural Sciences 450 The Sustainability of the UBC Food System Collaborative

    E-Print Network [OSTI]

    UBC Social Ecological Economic Development Studies (SEEDS) Student Report Agricultural Sciences 450, Sandy Lee, Erin McMillan, Andrew Smith, Lysa Wone University of British Columbia AGSC 450 March 31, 2004 of a project/report". #12;Agricultural Sciences 450 The Sustainability of the UBC Food System Collaborative

  3. Universal Science of Complexity: Consistent Understanding of Ecological, Living and Intelligent System Dynamics

    E-Print Network [OSTI]

    Andrei P. Kirilyuk

    2014-05-26T23:59:59.000Z

    A major challenge of interdisciplinary description of complex system behaviour is whether real systems of higher complexity levels can be understood with at least the same degree of objective, "scientific" rigour and universality as "simple" systems of classical, Newtonian science paradigm. The problem is reduced to that of arbitrary, many-body interaction (unsolved in standard theory). Here we review its causally complete solution, the ensuing concept of complexity and applications. The discovered key properties of dynamic multivaluedness and entanglement give rise to a qualitatively new kind of mathematical structure providing the exact version of real system behaviour. The extended mathematics of complexity contains the truly universal definition of dynamic complexity, randomness (chaoticity), classification of all possible dynamic regimes, and the unifying principle of any system dynamics and evolution, the universal symmetry of complexity. Every real system has a non-zero (and actually high) value of unreduced dynamic complexity determining, in particular, "mysterious" behaviour of quantum systems and relativistic effects causally explained now as unified manifestations of complex interaction dynamics. The observed differences between various systems are due to different regimes and levels of their unreduced dynamic complexity. We outline applications of universal concept of dynamic complexity emphasising cases of "truly complex" systems from higher complexity levels (ecological and living systems, brain operation, intelligence and consciousness, autonomic information and communication systems) and show that the urgently needed progress in social and intellectual structure of civilisation inevitably involves qualitative transition to unreduced complexity understanding (we call it "revolution of complexity").

  4. Biological Sciences Sheila Hedayati (BSO)

    E-Print Network [OSTI]

    Rose, Michael R.

    Prevention Rebecca Lally Industrial Hygiene Specialist Alvin Samala Industrial Hygiene Specialist David Kang Industrial Hygiene Energy Specialist James Pack Environmental Health Specialist David Mori Safety Engineer Radiation Safety Technician Rito Rincon (20%) Industrial Hygiene Specialist Susan Robb Industrial Hygiene

  5. College of Arts and Sciences 45 COLLEGE OF ARTS AND SCIENCES

    E-Print Network [OSTI]

    Xie,Jiang (Linda)

    , Chemistry, Cognitive Science, Communication Studies, Criminal Justice, Dance, Earth Sciences, English, Film with majors in Applied Physics, Biology, Chemistry, Criminal Justice, Earth Sciences, Mathematics (with concentrations in Applied Mathematics and Applied Statistics) and Optical Science and Engineering; Master

  6. Bioinformatics and Computational Biology Services Introduction

    E-Print Network [OSTI]

    Steiner, Ullrich

    Bioinformatics and Computational Biology Services Introduction Jenny Barna, Department of the Biological Sciences bioinformatics and computational biology research support service, which is used it provides. There are servers with many cores and very large memory (RAM) on which you can run computing jobs

  7. Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Glass, N Louise [UC Berkeley

    2013-01-25T23:59:59.000Z

    N. Louise Glass from the University of California, Berkeley, presents a talk titled "Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

  8. Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Glass, N Louise [UC Berkeley] [UC Berkeley

    2012-03-22T23:59:59.000Z

    N. Louise Glass from the University of California, Berkeley, presents a talk titled "Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

  9. DOI: 10.1126/science.1198374 , 1787 (2010);330Science

    E-Print Network [OSTI]

    Higgins, Darren

    2010-01-01T23:59:59.000Z

    Centrum Systems Biology Network) (S.D.M.); the Wellcome Trust (J.A.); the William H. Gates III Endowed Chair of Biomedical Sciences (R.H.W.); and the A. L. Williams Professorship (M.B.G.). M. Snyder has. Anthony, K. Bell, C. Davis, C. Dieterich, Y. Field, A. S. Hammonds, J. Jo, N. Kaplan, A. Manrai, B. Mathey

  10. Windows on Computer Science Department of Computer and Information Science

    E-Print Network [OSTI]

    Fang, Shiaofen

    1 CSCI 120 Windows on Computer Science Department of Computer and Information Science IUPUI What is Computer Science? Is Computer Science the study of computers (Building computers, and writing computer programs) ? Computer Science is no more about computers than astronomy is about telescopes, or biology

  11. Biology and management of insect pests in North American intensively managed hardwood forest systems.

    SciTech Connect (OSTI)

    Coyle, David R.; Nebeker, T., E.; Hart, E., R.; Mattson, W., J.

    2005-01-01T23:59:59.000Z

    Annu. Rev. Entomol. 50:1-29. Abstract Increasing demand for wood and wood products is putting stress on traditional forest production areas, leading to long-term economic and environmental concerns. Intensively managed hardwood forest systems (IMHFS), grown using conventional agricultural as well as forestry methods, can help alleviate potential problems in natural forest production areas. Although IMHFS can produce more biomass per hectare per year than natural forests, the ecologically simplified, monocultural systems may greatly increase the crops susceptibility to pests. Species in the genera Populus and Salix comprise the greatest acreage in IMHFS in North America, but other species, including Liquidambar styracifua and Platanus occidentalis, are also important. We discuss life histories, realized and potential damage, and management options for the most economically infuential pests that affect these hardwood species. The substantial inherent challenges associated with pest management in the monocultural environments created by IMHFS are reviewed. Finally, we discuss ways to design IMHFS that may reduce their susceptibility to pests, increase their growth and productivity potential, and create a more sustainable environment.

  12. Biological Interactions and Dynamics

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    proactive "EMSL 2.0-style" research paradigm. Because of the rapid pace of modern genomics and systems biology research, it is necessary to respond rapidly and flexibly to...

  13. Indiana University Cognitive Science

    E-Print Network [OSTI]

    Indiana University

    Indiana University Cognitive Science Exploring the Science of Learning Representations Simulations in science. How can simulations best be designed to enhance science learning and transfer? Computer Modeling Transfer Complex Systems Perception Which representations might help your students learn about

  14. High performance bioinformatics and computational biology on general-purpose graphics processing units 

    E-Print Network [OSTI]

    Ling, Cheng

    2012-06-25T23:59:59.000Z

    Bioinformatics and Computational Biology (BCB) is a relatively new multidisciplinary field which brings together many aspects of the fields of biology, computer science, statistics, and engineering. Bioinformatics ...

  15. The Systems Science & Industrial Engineering (SSIE) Department and The Thomas J. Watson School of Engineering and Applied

    E-Print Network [OSTI]

    Suzuki, Masatsugu

    The Systems Science & Industrial Engineering (SSIE) Department and The Thomas J. Watson School professionals, we will open the doors to demonstrate what industrial and systems engineers can contribute to any. We offer the BS degree in industrial and systems engineering (ISE), MEng degree in industrial

  16. Data-intensive computing laying foundation for biological breakthroughs

    SciTech Connect (OSTI)

    Hachigian, David J.

    2007-06-18T23:59:59.000Z

    Finding a different way is the goal of the Data-Intensive Computing for Complex Biological Systems (Biopilot) project—a joint research effort between the Pacific Northwest National Laboratory (PNNL) and Oak Ridge National Laboratory funded by the U.S. Department of Energy’s Office of Advanced Scientific Computing Research. The two national laboratories, both of whom are world leaders in computing and computational sciences, are teaming to support areas of biological research in urgent need of data-intensive computing capabilities.

  17. 178 IEEETRANSACTIONS ON NUCLEAR SCIENCE.VOL.41, NO. 1,FEBRUARY 1994 System Integration of the ASDEX-Upgrade Timing System

    E-Print Network [OSTI]

    Zachmann, Gabriel

    ASDEX-Upgradewhich is a plasma physics device for controlled nuclear fusion [l]. ASDEX- Upgrade178 IEEETRANSACTIONS ON NUCLEAR SCIENCE.VOL.41, NO. 1,FEBRUARY 1994 System Integration of the ASDEX of the control system. The differences to contemporary timer systems [2-5] in other fusion devices

  18. Simulation of flood flow in a river system using artificial neural networks Hydrology and Earth System Sciences, 9(4), 313321 (2005) EGU

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    2005-01-01T23:59:59.000Z

    Simulation of flood flow in a river system using artificial neural networks 313 Hydrology and Earth System Sciences, 9(4), 313321 (2005) © EGU Simulation of flood flow in a river system using artificial Artificial neural networks (ANNs) provide a quick and flexible means of developing flood flow simulation

  19. Self-referencing cellular automata: A model of the evolution of information control in biological systems

    E-Print Network [OSTI]

    Theodore P. Pavlic; Alyssa M. Adams; Paul C. W. Davies; Sara Imari Walker

    2014-05-16T23:59:59.000Z

    Cellular automata have been useful artificial models for exploring how relatively simple rules combined with spatial memory can give rise to complex emergent patterns. Moreover, studying the dynamics of how rules emerge under artificial selection for function has recently become a powerful tool for understanding how evolution can innovate within its genetic rule space. However, conventional cellular automata lack the kind of state feedback that is surely present in natural evolving systems. Each new generation of a population leaves an indelible mark on its environment and thus affects the selective pressures that shape future generations of that population. To model this phenomenon, we have augmented traditional cellular automata with state-dependent feedback. Rather than generating automata executions from an initial condition and a static rule, we introduce mappings which generate iteration rules from the cellular automaton itself. We show that these new automata contain disconnected regions which locally act like conventional automata, thus encapsulating multiple functions into one structure. Consequently, we have provided a new model for processes like cell differentiation. Finally, by studying the size of these regions, we provide additional evidence that the dynamics of self-reference may be critical to understanding the evolution of natural language. In particular, the rules of elementary cellular automata appear to be distributed in the same way as words in the corpus of a natural language.

  20. College of Biology and Agriculture (801) 422-3963

    E-Print Network [OSTI]

    Hart, Gus

    College of Biology and Agriculture 301 WIDB (801) 422-3963 Internet: http://bioag.byu.edu Dean are included within the College of Biology and Agriculture: Integrative Biology (InBio) Microbiology science. Agricultural sciences address three of the great dilemmas facing mankind in the twenty

  1. Roadmap: Biology -Bachelor of Arts [AS-BA-BSCI

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Biology - Bachelor of Arts [AS-BA-BSCI] College of Arts and Sciences Department of Biological Sciences Catalog Year: 2012­2013 Page 1 of 3 | Last Updated: 2-May-12/LNHD This roadmap hours and minimum 42 upper- division credit hours #12;Roadmap: Biology - Bachelor of Arts [AS

  2. COMPUTATIONAL SCIENCE CENTER

    SciTech Connect (OSTI)

    DAVENPORT,J.

    2004-11-01T23:59:59.000Z

    The Brookhaven Computational Science Center brings together researchers in biology, chemistry, physics, and medicine with applied mathematicians and computer scientists to exploit the remarkable opportunities for scientific discovery which have been enabled by modern computers. These opportunities are especially great in computational biology and nanoscience, but extend throughout science and technology and include for example, nuclear and high energy physics, astrophysics, materials and chemical science, sustainable energy, environment, and homeland security.

  3. Increasing Public Involvement in Structural Biology

    E-Print Network [OSTI]

    Baker, David

    --often referred to as citizen science--provides a means of engaging people's skills, rather than just for the public to get actively involved in structural biology research? Citizen science projects can require areas for citizen science as structural problems both are amenable to human spatial-reasoning skills

  4. Future agricultural systems competencies of beginning Texas agricultural science teachers as determined by agricultural education professionals and administrators of agricultural education programs: a Delphi study

    E-Print Network [OSTI]

    Rocka, Timothy Dee

    2004-09-30T23:59:59.000Z

    Professionals and Administrators of Agricultural Education Programs: A Delphi Study. (August 2003) Timothy Dee Rocka, B.S., Stephen F. Austin State University; M.S., Stephen F. Austin State University Chair of Advisory Committee: Dr. Gary Briers It has...; Binkley & Tulloch, 1981; Connors, 1998; Frantz, 1997; Graham & Garton, 2001; NCAE, 1999; Paul, 1995; Pritchett, 1997; Rojewski, 2002). Biological science includes the collective study of living things. Physical science in composed of chemistry...

  5. Biological Safety

    Broader source: Energy.gov [DOE]

    The DOE's Biological Safety Program provides a forum for the exchange of best practices, lessons learned, and guidance in the area of biological safety. This content is supported by the Biosurety Executive Team. The Biosurety Executive Team is a DOE-chartered group. The DOE Office of Worker Safety and Health Policy provides administrative support for this group. The group identifies biological safety-related issues of concern to the DOE and pursues solutions to issues identified.

  6. Development of an Implementation Plan Related to Biological Opinion on Operation of the Federal Columbia River Power System ; Step 1: Review and Critique of Implementation Plans.

    SciTech Connect (OSTI)

    Neitzel, Duane A.; Bunn, Amoret

    2000-12-01T23:59:59.000Z

    The Draft Biological Opinion on Operation of the Federal Columbia River Power System calls for the development of 1- and 5-year implementation plans. These plans will provide the roadmap for planning and subsequent implementation of actions intended to meet specific performance standards (i.e., biological objectives) in a timely manner. To develop implementation plans the key tasks and sequences of steps must be determined. Those responsible for specific tasks must be identified and they must understand what they need to do. There must be assurances that the resources (human, physical, and fiscal) to complete the tasks are available. Motivation and incentive systems should be set up. Systems to coordinate efforts and guide activity must be devised and installed. An information management system must be designed to manage and analyze data and ensure that appropriate data are collected. This will aid managers in assessing whether individual activities or actions are tracking with stated goals and objectives. Training programs to improve managerial and worker capability in making and implementing plans should be designed. Managerial leadership to guide the efforts of all individuals in achieving the goals of the anadromous and resident fish recovery must be developed. It is the entire process of managing fish recovery in relationship to the Biological Opinion that will guide, coordinate, motivate, and control work and determine the effectiveness and efficiency of plan implementation.

  7. Biological Systems Publications

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Spectral induced polarization of hydroxide adsorption and mineral precipitation in porous media. Environ. Sci. Technol. doi: 10.1021es204404e. Gebrehiwet, T., Redden, G.D.,...

  8. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative1 First Use of Energy for All Purposes (Fuel and Nonfuel), 2002; Level: National5Sales for4,645U.S. DOEThe Bonneville Power AdministrationField8,Dist.Newof EnergyFundingGeneGenome Engineering withfor

  9. Ecology to evolution, marine biology to molecular biology: Oxford's prestigious Life Science journals uncover the extraordinary scope of life on our planet. Our diverse range of titles includes Annals of Botany, the Journal of

    E-Print Network [OSTI]

    Kaski, Samuel

    service including offsite access (46 titles) 1. Forest & Conservation History and Environmental History Review merged in 1996 to become Environmental History 2. Previously named Journal of Electron Microscopy library. The Oxford Journals Life Sciences Collection 2014 Impact Factors taken from the 2012 Journal

  10. Brookhaven National Laboratory/ Photon Sciences Subject: Frequently Asked Questions about Occupational Health and Safety Management System (OHSAS 18001)

    E-Print Network [OSTI]

    Homes, Christopher C.

    Occupational Health and Safety Management System (OHSAS 18001) Number: PS-ESH-0060 Revision: 2 Effective: 6 used by Photon Sciences to ensure that the ESH policies of the Laboratory are met in our activities and Safety Management System (OHSAS 18001) Number: PS-ESH-0060 Revision: 2 Effective: 6/6/12 Page 2 of 2

  11. Natural Hazards and Earth System Sciences (2004) 4: 775781 SRef-ID: 1684-9981/nhess/2004-4-775

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    2004-01-01T23:59:59.000Z

    electromagnetic (EM) monitoring systems to search possible precursory or co-seismic EM signals associated, magnetic and electro-magnetic fields correlated with seismic activity have been reported in USSR (KopytenkoNatural Hazards and Earth System Sciences (2004) 4: 775­781 SRef-ID: 1684-9981/nhess/2004

  12. CHEMICAL & BIOLOGICAL ENGINEERING UNDERGRADUATE HANDBOOK 8/24/2011 RENSSELAER POLYTECHNIC INSTITUTE

    E-Print Network [OSTI]

    Salama, Khaled

    . The curriculum, which builds on chemistry, biology, mathematics, basic sciences, and engineering science, culminates in professional applications in which theory is tempered by engineering art and economic1 CHEMICAL & BIOLOGICAL ENGINEERING UNDERGRADUATE HANDBOOK 8/24/2011 RENSSELAER

  13. CHEMICAL & BIOLOGICAL ENGINEERING UNDERGRADUATE HANDBOOK 8/24/2010 RENSSELAER POLYTECHNIC INSTITUTE

    E-Print Network [OSTI]

    Salama, Khaled

    . The curriculum, which builds on chemistry, biology, mathematics, basic sciences, and engineering science, culminates in professional applications in which theory is tempered by engineering art and economic1 CHEMICAL & BIOLOGICAL ENGINEERING UNDERGRADUATE HANDBOOK 8/24/2010 RENSSELAER

  14. SCIENCE & ENGINEERING84 Understanding Paper Codes 85

    E-Print Network [OSTI]

    Waikato, University of

    SCIENCE & ENGINEERING84 PAPERS Understanding Paper Codes 85 100 Level Science Papers 86 Biological Sciences 87 Chemistry 94 Earth Sciences 99 Electronics 106 Engineering 111 Environmental Sciences 115 Material and Processing 116 Physics 124 Psychology 127 Work Placements 133 ­ Science 133 ­ Engineering 134

  15. University of Windsor Faculty of Science Programs of Study (Winter 2015 Calendar) Note: No new admissions to concurrent program as of Fall 2014.

    E-Print Network [OSTI]

    (Honours Computer Science with software Engineering Specialization)* Concurrent Bachelor of Computer admissions to concurrent program as of Fall 2014. BIOLOGICAL SCIENCES Honours Biological Sciences Honours, Cognition and Neuroscience BSc Honours Biology and Biochemistry (Health and Biomedical Stream) Concurrent

  16. AGRICULTURAL & BIOLOGICAL ENGINEERING FALL 2013 INSIDE THIS ISSUE

    E-Print Network [OSTI]

    Gilbert, Matthew

    AGRICULTURAL & BIOLOGICAL ENGINEERING FALL 2013 INSIDE THIS ISSUE: · ABESpring of Agricultural and Biological Engineering of the College of Agricultural, Consumer and Environmental Sciences and the College of Engineering at the University of Illinois at Urbana Champaign. 338 Agricultural Engineering

  17. What Was Life? Answers from Three Limit Biologies

    E-Print Network [OSTI]

    Helmreich, Stefan

    2011-01-01T23:59:59.000Z

    What is life? A gathering consensus in anthropology, science studies, and philosophy of biology suggests that the theoretical object of biology, “life,” is today in transformation, if not dissolution. Proliferating ...

  18. Life sciences and environmental sciences

    SciTech Connect (OSTI)

    Not Available

    1992-02-01T23:59:59.000Z

    The DOE laboratories play a unique role in bringing multidisciplinary talents -- in biology, physics, chemistry, computer sciences, and engineering -- to bear on major problems in the life and environmental sciences. Specifically, the laboratories utilize these talents to fulfill OHER's mission of exploring and mitigating the health and environmental effects of energy use, and of developing health and medical applications of nuclear energy-related phenomena. At Lawrence Berkeley Laboratory (LBL) support of this mission is evident across the spectrum of OHER-sponsored research, especially in the broad areas of genomics, structural biology, basic cell and molecular biology, carcinogenesis, energy and environment, applications to biotechnology, and molecular, nuclear and radiation medicine. These research areas are briefly described.

  19. Life sciences and environmental sciences

    SciTech Connect (OSTI)

    Not Available

    1992-02-01T23:59:59.000Z

    The DOE laboratories play a unique role in bringing multidisciplinary talents -- in biology, physics, chemistry, computer sciences, and engineering -- to bear on major problems in the life and environmental sciences. Specifically, the laboratories utilize these talents to fulfill OHER`s mission of exploring and mitigating the health and environmental effects of energy use, and of developing health and medical applications of nuclear energy-related phenomena. At Lawrence Berkeley Laboratory (LBL) support of this mission is evident across the spectrum of OHER-sponsored research, especially in the broad areas of genomics, structural biology, basic cell and molecular biology, carcinogenesis, energy and environment, applications to biotechnology, and molecular, nuclear and radiation medicine. These research areas are briefly described.

  20. MARGA VICEDO teaches history of biology at the Institute for the History and Philosophy of Science and Technology at the University of Toronto. She holds a PhD in philosophy of science from the University of

    E-Print Network [OSTI]

    Vicedo, Marga

    and in popular culture. According to this legend, Harlow showed that maternal care in infancy was essential an instinctual need for maternal care and disruption of the mother­infant bond has severe con- sequences of Science and Technology at the University of Toronto. She holds a PhD in philosophy of science from

  1. anaerobic biological reactors: Topics by E-print Network

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Peter R. 97 Department of Agricultural and Biological Engineering Fall 2011 Small Scale Anaerobic Digestion by PENERGY Solutions Materials Science Websites Summary: with less...

  2. September 2013 Most Viewed Documents for Biology And Medicine...

    Office of Scientific and Technical Information (OSTI)

    September 2013 Most Viewed Documents for Biology And Medicine Science Subject Feed Drug Retention Times Center for Human Reliability Studies (2007) 29 > Oleoresin Capsicum...

  3. aquaculture biological agent: Topics by E-print Network

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Invertebrates Summer C, 2013 Environmental Sciences and Ecology Websites Summary: SYLLABUS Biology of Fisheries and Aquaculture Invertebrates FAS 6932 Summer C, 2013 Instructor...

  4. aquaculture overcoming biological: Topics by E-print Network

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Invertebrates Summer C, 2013 Environmental Sciences and Ecology Websites Summary: SYLLABUS Biology of Fisheries and Aquaculture Invertebrates FAS 6932 Summer C, 2013 Instructor...

  5. Institute for Neurocognitive Science & Technology

    E-Print Network [OSTI]

    engineering » Veterinary medicine ­ Promoting economic development of the state by serving as a magnet and Biological Engineering ­ Veterinary Medicine · Clinical Sciences · Basic Sciences ­ Arts and Sciences Adaptive Warrior Performance · Basic Science: Applied to Solve DoD Problems ­ Balanced basic and applied

  6. The Department of Management Science and Information Systems of Rutgers Business School Newark and New Brunswick invites applications for a tenure-track position at the Assistant Professor rank to

    E-Print Network [OSTI]

    Lin, Xiaodong

    The Department of Management Science and Information Systems of Rutgers Business School ­ Newark to start in September 2012. The department offers undergraduate programs in Management Science, Information Technology programs and it coordinates the tracks in Management Science and Information Technology

  7. Before the House Science and Technology Subcommittee on Energy...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Associate Director Office of Biological and Environmental Research Office of Science Subject: DOE's Office of Science Research Applications 9-10-09FinalTestimony(Palmi...

  8. Molecular Science Computing | EMSL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Molecular Science Computing Overview Cell Isolation and Systems Analysis Deposition and Microfabrication Mass Spectrometry Microscopy Molecular Science Computing NMR and EPR...

  9. Journal of Mathematical Biology ISSN 0303-6812

    E-Print Network [OSTI]

    Lewis, Mark

    . The approach of Speirs and Gurney (2001) employs classical mathematical methods of population spread differently, to determine population persistence or extinction. The theoretical frame- work and methods Departments of Mathematical and Statistical Sciences and of Biological Sciences, University of Alberta

  10. Computer Science & Engineering The Department of Computer Science & Engineering at the

    E-Print Network [OSTI]

    Zhou, Shengli

    Computer Science & Engineering The Department of Computer Science & Engineering at the University # Students 10 undergraduates Prequisites Background in computing or biological science and interest in both-Grid Computing. The initiatives aim at advancing the application of modern computing infrasutrcture

  11. REVIEW: PART OF A SPECIAL ISSUE ON POPULATION BIOLOGY Pollination patterns and plant breeding systems in the Galapagos: a review

    E-Print Network [OSTI]

    Traveset, Anna

    has so far limited our predictive power on the consequences of the increasing threat of introducedREVIEW: PART OF A SPECIAL ISSUE ON POPULATION BIOLOGY Pollination patterns and plant breeding an important service to both plants and their pollinators. The rather modest level of knowledge on this subject

  12. Technical Working Group on Biological Evidence Preservation

    E-Print Network [OSTI]

    Perkins, Richard A.

    of Forensic Science (AAFS) Annual Meeting Thursday, February 20, 2014 #12;The State of Biological Evidence Dennis Davenport, Senior Crime Scene Investigator, Commerce City PD Rock Harmon, Consultant, DNARock

  13. Reducing Mortality from Terrorist Releases of Chemical and Biological Agents: I. Filtration for Ventilation Systems in Commercial Building

    E-Print Network [OSTI]

    Thatcher, Tracy L.

    2011-01-01T23:59:59.000Z

    Filtration for Ventilation Systems in Commercial BuildingsFiltration for Ventilation Systems in Commercial Buildingsbuilding's mechanical ventilation system and by infiltration

  14. CollegeofEarth,Ocean, andAtmosphericSciences

    E-Print Network [OSTI]

    Kurapov, Alexander

    Chemistry for Environmental Sciences 490 Environmental Conservation & Sustainability 577 Environmental, and Atmospheric Sciences Environmental Sciences Earth Sciences Geology Option Geography Option Earth Systems Sciences or Environmental Sciences** The new College of Earth Ocean and Atmospheric Sciences (CEOAS) has

  15. Invited Review Article: Advanced light microscopy for biological space research

    SciTech Connect (OSTI)

    De Vos, Winnok H., E-mail: winnok.devos@uantwerpen.be [Laboratory of Cell Biology and Histology, Department of Veterinary Sciences, University of Antwerp, Antwerp (Belgium); Cell Systems and Imaging Research Group, Department of Molecular Biotechnology, Ghent University, Ghent (Belgium); Beghuin, Didier [Lambda-X, Nivelles (Belgium); Schwarz, Christian J. [European Space Agency (ESA), ESTEC, TEC-MMG, Noordwijk (Netherlands); Jones, David B. [Institute for Experimental Orthopaedics and Biomechanics, Philipps University, Marburg (Germany); Loon, Jack J. W. A. van [Department of Oral and Maxillofacial Surgery/Oral Pathology, VU University Medical Center and Department of Oral Cell Biology, Academic Centre for Dentistry Amsterdam, Amsterdam (Netherlands); Bereiter-Hahn, Juergen; Stelzer, Ernst H. K. [Physical Biology, BMLS (FB15, IZN), Goethe University, Frankfurt am Main (Germany)

    2014-10-15T23:59:59.000Z

    As commercial space flights have become feasible and long-term extraterrestrial missions are planned, it is imperative that the impact of space travel and the space environment on human physiology be thoroughly characterized. Scrutinizing the effects of potentially detrimental factors such as ionizing radiation and microgravity at the cellular and tissue level demands adequate visualization technology. Advanced light microscopy (ALM) is the leading tool for non-destructive structural and functional investigation of static as well as dynamic biological systems. In recent years, technological developments and advances in photochemistry and genetic engineering have boosted all aspects of resolution, readout and throughput, rendering ALM ideally suited for biological space research. While various microscopy-based studies have addressed cellular response to space-related environmental stressors, biological endpoints have typically been determined only after the mission, leaving an experimental gap that is prone to bias results. An on-board, real-time microscopical monitoring device can bridge this gap. Breadboards and even fully operational microscope setups have been conceived, but they need to be rendered more compact and versatile. Most importantly, they must allow addressing the impact of gravity, or the lack thereof, on physiologically relevant biological systems in space and in ground-based simulations. In order to delineate the essential functionalities for such a system, we have reviewed the pending questions in space science, the relevant biological model systems, and the state-of-the art in ALM. Based on a rigorous trade-off, in which we recognize the relevance of multi-cellular systems and the cellular microenvironment, we propose a compact, but flexible concept for space-related cell biological research that is based on light sheet microscopy.

  16. Course Course Title Area Leader Frequency 09 Fall 10 Spr 10 Fall 11 Spr 11 Fall 12 Spr 12 Fall 13 Spr MMAE 433 Design of Thermal System Thermal Sciences Yagoobi 2 x x x x

    E-Print Network [OSTI]

    Heller, Barbara

    468 Introduction to Ceramic Materials Materials Science & Eng Gonczy 2 x x x x MMAE 470 Introduction Processes Materials Science & Eng Tin 2 x x x x MMAE 486 Properties of Ceramics Materials Science & Eng Systems Thermal Sciences Ostrogorsky TBD x MMAE 523 Fundamentals of Power Generation Thermal Sciences

  17. Climatic, biological, and strategic effects of nuclear war. Hearing before the Subcommittee on Natural Resources, Agriculture Research and Environment of the Committee on Science and Technology, House of Representatives, Ninety-Eighth Congress, Second Session, September 12, 1984

    SciTech Connect (OSTI)

    Not Available

    1985-01-01T23:59:59.000Z

    A panel of experts, including Carl Sagan, Jay Gould, and Edward Teller, testified along with climate and atmospheric science experts from the Soviet Union on the long-term effects of a nuclear war. The scientists warned that such an event could repeat the biological and climatic disruption that ended the age of dinosaurs 65 million years ago. The purpose of the hearing was to inform committee members about the nature and outcome of a nuclear winter. The scientists also described international research programs designed to ascertain these long-term effects. They pointed out that, while the effects of a single explosion are well known, little is known of overlapping effects from multiple explosions. Two appendices with additional material submitted for the record and additional questions and answers follows the testimony.

  18. Pacific Northwest Laboratory annual report for 1993 to the DOE Office of Energy Research. Part 1: Biomedical Sciences

    SciTech Connect (OSTI)

    Lumetta, C.C. [ed.; Park, J.F.

    1994-03-01T23:59:59.000Z

    This report summarizes FY 1993 progress in biological and general life sciences research programs conducted for the Department of Energy`s Office of Health and Environmental REsearch (OHER) at Pacific Northwest Laboratory (PNL). This research provides knowledge of fundamental principles necessary to identify, understand, and anticipate the long-term health consequences of exposure to energy-related radiation and chemicals. The Biological Research section contains reports of studies using laboratory animals, in vitro cell systems, and molecular biological systems. This research includes studies of the impact of radiation, radionuclides, and chemicals on biological responses at all levels of biological organization. The General Life Sciences Research section reports research conducted for the OHER human genome program.

  19. Natural Hazards and Earth System Sciences, 5, 583592, 2005 SRef-ID: 1684-9981/nhess/2005-5-583

    E-Print Network [OSTI]

    Boyer, Edmond

    -time capability of these data, as well as to their high sensitivity to water content in the soil. On the other be regarded as a timely indication of an anoma- lous value of soil water content. This evidence suggests. Natural Hazards and Earth System Sciences Monitoring soil wetness variations by means of satellite passive

  20. DanielViviroli and RolfWeingartner Hydrology and Earth System Sciences, 8(6), 10161029 (2004) EGU

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    DanielViviroli and RolfWeingartner 1016 Hydrology and Earth System Sciences, 8(6), 10161029 (2004) © EGU The hydrological significance of mountains: from regional to global scale Daniel Viviroli and Rolf share of the worlds population with fresh water. Quantification of the hydrological significance

  1. Atul H. Haria and Paul Shand Hydrology and Earth System Sciences, 8(3), 334344 (2004) EGU

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Atul H. Haria and Paul Shand 334 Hydrology and Earth System Sciences, 8(3), 334344 (2004) © EGU and stream flow generation Atul H. Haria1 and Paul Shand2 1 Centre for Ecology and Hydrology, Maclean, groundwater, Hafren, hillslope hydrology, Plynlimon, recharge, soil water, streamflow generation Introduction

  2. Soon Thiam Khu and Micha G.F.Werner Hydrology and Earth System Sciences, 7(5), 680692 (2003) EGU

    E-Print Network [OSTI]

    Boyer, Edmond

    Soon Thiam Khu and Micha G.F.Werner 680 Hydrology and Earth System Sciences, 7(5), 680692 (2003) © EGU Reduction of Monte-Carlo simulation runs for uncertainty estimation in hydrological modelling Soon applied for the estimation of uncertainties in hydrological models due to uncertain parameters. One

  3. What is microfluidics? It is the science and technology of systems that process or manipulate small (109

    E-Print Network [OSTI]

    Prentiss, Mara

    What is microfluidics? It is the science and technology of systems that process or manipulate small of micrometres. The first applications of microfluidic technologies have been in analy- sis, for which they offer for analysis; and small footprints for the analytical devices1 . Microfluidics exploits both its most obvious

  4. DRAFT Measurement Science for Complex Information Systems http://www.nist.gov/itl/antd/emergent_behavior.cfm

    E-Print Network [OSTI]

    DRAFT Measurement Science for Complex Information Systems http://www.nist.gov, "Cisco routers caused major outage in Japan", Network World, May 16, 2007. [8] J. Cowie, "China's 18-Minute Mystery" Renesys Blog, November 18, 2010. http://www.renesys.com/blog/2010/11/chinas-18-minute

  5. DEGREE REQUIREMENTS BIOLOGICAL ENGINEERING TECHNOLOGY

    E-Print Network [OSTI]

    Walter, M.Todd

    DEGREE REQUIREMENTS BIOLOGICAL ENGINEERING TECHNOLOGY ENVIRONMENTAL ENGINEERING TECHNOLOGY The curriculum in the technology programs must satisfy the College of Agriculture and Life Sciences (CALS for the technology programs are listed by subject matter in three major categories: (A) Basic Subjects, (B) Advanced

  6. STOCHASTIC GENERATION OF BIOLOGICALLY ACCURATE BRAIN NETWORKS

    E-Print Network [OSTI]

    STOCHASTIC GENERATION OF BIOLOGICALLY ACCURATE BRAIN NETWORKS A Thesis by ARAVIND ALURI Submitted OF BIOLOGICALLY ACCURATE BRAIN NETWORKS A Thesis by ARAVIND ALURI Submitted to the Office of Graduate Studies Head of Department, Valerie Taylor December 2005 Major Subject: Computer Science #12;iii ABSTRACT

  7. Science-driven system architecture: A new process for leadership class computing

    SciTech Connect (OSTI)

    Simon, Horst; Kramer, William; Saphir, William; Shalf, John; Bailey, David; Oliker, Leonid; Banda, Michael; McCurdy, C. William; Hules, John; Canning, Andrew; Day, Marc; Colella, Philip; Serafini, David; Wehner, Michael; Nugent, Peter

    2004-10-19T23:59:59.000Z

    Over the past several years, computational scientists have observed a frustrating trend of stagnating application performance despite dramatic increases in peak performance of high performance computers. In 2002, researchers at Lawrence Berkeley National Laboratory, Argonne National Laboratory, and IBM proposed a new process to reverse this situation [1]. This strategy is based on new types of development partnerships with computer vendors based on the concept of science-driven computer system design. This strategy will engage applications scientists well before an architecture is available for commercialization. The process is already producing results, and has further potential for dramatically improving system efficiency. This paper documents the progress to date and the potential for future benefits. An example of this process is discussed, using IBM Power architecture with a computer architecture design that can lead to a sustained performance of 50 to 100 Tflo p/s on a broad spectrum of applications in 2006 for a reasonable cost. This partnership will establish a collaborative approach to modifying computer architecture to enable heretofore unrealized achievements in computer capability-limited fields such as nanoscience, combustion modeling, fusion, climate modeling, and astrophysics.

  8. What is Systems Biology? Computational Biology Laboratory

    E-Print Network [OSTI]

    Lee, H.C. Paul

    of high-throughput experimental techniques ­ micro-array (1995), mass spectrometry of proteins (1987), 2D* Proteins, energy, functions, etc. Building Blueprint Machines & workers Energy & supplies Physical plant ­gene-disruption data ·(protein­protein interaction) yeast two- hybrid data ·Many high-throughput exp

  9.  Is Do-It-Yourself Biology Being Co-opted by Institutions?

    E-Print Network [OSTI]

    Delfanti, Alessandro

    2014-01-01T23:59:59.000Z

    biology; Institutions; Citizen science; Co­option  Despite  for other forms of citizen science Fig.  1.  Squeezing the CAE) performed several citizen science practices similar to 

  10. Biological preconcentrator

    DOE Patents [OSTI]

    Manginell, Ronald P. (Albuquerque, NM); Bunker, Bruce C. (Albuquerque, NM); Huber, Dale L. (Albuquerque, NM)

    2008-09-09T23:59:59.000Z

    A biological preconcentrator comprises a stimulus-responsive active film on a stimulus-producing microfabricated platform. The active film can comprise a thermally switchable polymer film that can be used to selectively absorb and desorb proteins from a protein mixture. The biological microfabricated platform can comprise a thin membrane suspended on a substrate with an integral resistive heater and/or thermoelectric cooler for thermal switching of the active polymer film disposed on the membrane. The active polymer film can comprise hydrogel-like polymers, such as poly(ethylene oxide) or poly(n-isopropylacrylamide), that are tethered to the membrane. The biological preconcentrator can be fabricated with semiconductor materials and technologies.

  11. What rough beast? Synthetic Biology and the Future of Biosecurity

    E-Print Network [OSTI]

    Mohr, Scott C.

    Synthetic biology seeks to create modular biological parts that can be assembled into useful devices, allowing the modification of biological systems with greater reliability, at lower cost, with greater speed, and by a ...

  12. A Systems Approach to Breast Cancer Carcinogenesis to Therapy

    E-Print Network [OSTI]

    A Systems Approach to Breast Cancer ­ Carcinogenesis to Therapy Speaker: Dr. Joe Gray Director, Center for Spatial Systems Biomedicine Oregon Health & Science University Date: Monday, April 18, 2011 that influence cancer behavior, (b) systems biology approaches to elucidate mechanisms by which cancer

  13. Science-driven system architecture: A new process for leadership class computing

    E-Print Network [OSTI]

    2004-01-01T23:59:59.000Z

    Hitachi SR8000-F1, High Performance Computing in Science ands investment in high performance computing, initiate a newofferings, the high performance computing community has

  14. Accessing biology's toolbox for the mesoscale biofabrication of soft matter

    E-Print Network [OSTI]

    Raghavan, Srinivasa

    Accessing biology's toolbox for the mesoscale biofabrication of soft matter Gregory F. Payne,bf James N. Culverag and William E. Bentley*ab Biology is a master of mesoscale science, possessing will provide a biocompatible approach to mesoscale science and yield products that are safe, sustainable

  15. Natural Sciences Research Outlook

    E-Print Network [OSTI]

    Sciences (July 2009), including: UK Research Councils: Biotechnology and Biological· Sciences ResearchEpARTmENT oF phySICS 14 CENTRE FoR ENVIRoNmENTAL poLICy 15 RESEARCh INSTITUTES ANd CENTRES 16 ENERGy ANd ENVIRo

  16. PLoS Computational Biology: A New Community Journal

    E-Print Network [OSTI]

    Editorial PLoS Computational Biology: A New Community Journal Philip E. Bourne, Steven E. Brenner, Michael B. Eisen W elcome to PLoS Computation- al Biology, a community journal from the Public Li- brary of Science dedicated to reporting biological advances achieved through computation. The journal is published

  17. NIH WORKING DEFINITION OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY

    E-Print Network [OSTI]

    Rau, Don C.

    NIH WORKING DEFINITION OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY July 17, 2000 The following working definition of bioinformatics and computational biology were developed by the BISTIC Definition Liu Preamble Bioinformatics and computational biology are rooted in life sciences as well as computer

  18. University of Maryland Center for Environmental Science Graduate Education Summary

    E-Print Network [OSTI]

    Boynton, Walter R.

    · Fisheries Science · Oceanography · Environmental Molecular Biology/Biotechnology MEES Program #12;MEES Environmental Molecular Biology/ Biotechnology 5 1 6 10 Environmental Science 30 7 23 8 Fisheries Science 25 10University of Maryland Center for Environmental Science Graduate Education Summary Prepared

  19. In: Weeds: Management, Economic Impacts and Biology ISBN: 978-1-60741-010-2 Editor: Rudolph V. Kingely Nova Science Publishers, Inc.

    E-Print Network [OSTI]

    and soil quality, recreational values, and wildlife habitat. Traditionally, weed management in natural because most weed management tools originated in agricultural systems where removal of the weed commonly of natural systems and the limitations of available management tools. To improve weed management in natural

  20. Life Sciences Division progress report for CYs 1997-1998 [Oak Ridge National Laboratory

    SciTech Connect (OSTI)

    Mann, Reinhold C.

    1999-06-01T23:59:59.000Z

    This is the first formal progress report issued by the ORNL Life Sciences Division. It covers the period from February 1997 through December 1998, which has been critical in the formation of our new division. The legacy of 50 years of excellence in biological research at ORNL has been an important driver for everyone in the division to do their part so that this new research division can realize the potential it has to make seminal contributions to the life sciences for years to come. This reporting period is characterized by intense assessment and planning efforts. They included thorough scrutiny of our strengths and weaknesses, analyses of our situation with respect to comparative research organizations, and identification of major thrust areas leading to core research efforts that take advantage of our special facilities and expertise. Our goal is to develop significant research and development (R&D) programs in selected important areas to which we can make significant contributions by combining our distinctive expertise and resources in the biological sciences with those in the physical, engineering, and computational sciences. Significant facilities in mouse genomics, mass spectrometry, neutron science, bioanalytical technologies, and high performance computing are critical to the success of our programs. Research and development efforts in the division are organized in six sections. These cluster into two broad areas of R&D: systems biology and technology applications. The systems biology part of the division encompasses our core biological research programs. It includes the Mammalian Genetics and Development Section, the Biochemistry and Biophysics Section, and the Computational Biosciences Section. The technology applications part of the division encompasses the Assessment Technology Section, the Environmental Technology Section, and the Toxicology and Risk Analysis Section. These sections are the stewards of the division's core competencies. The common mission of the division is to advance science and technology to understand complex biological systems and their relationship with human health and the environment.