National Library of Energy BETA

Sample records for biological systems science

  1. Systems Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ORNL brings together multidisciplinary expertise and special facilities in genomics, computational biology, plant sciences, microbiology, microbial ecology, biophysics,...

  2. The Science Institutes at Yale's West Campus Energy Sciences Cancer Biology Chemical Biology Microbial Diversity Nanobiology Systems Biology

    E-Print Network [OSTI]

    Microbial Diversity Nanobiology Systems Biology The Energy Sciences Institute at Yale's West Campus #12The Science Institutes at Yale's West Campus Energy Sciences Cancer Biology Chemical Biology;#12;T he need for cheap, abundant energy is among the defining issues of our time. In the twentieth

  3. The Science Institutes at Yale's West Campus Chemical Biology Cancer Biology Energy Sciences Microbial Diversity Nanobiology Systems Biology

    E-Print Network [OSTI]

    The Science Institutes at Yale's West Campus Chemical Biology Cancer Biology Energy Sciences Microbial Diversity Nanobiology Systems Biology The Chemical Biology Institute at Yale's West Campus #12 and molecular assem- blies, large and small, to address challenging problems in health, energy

  4. The Science Institutes at Yale's West Campus Nanobiology Cancer Biology Chemical Biology Energy Sciences Microbial Diversity Systems Biology

    E-Print Network [OSTI]

    The Science Institutes at Yale's West Campus Nanobiology Cancer Biology Chemical Biology Energy Sciences Microbial Diversity Systems Biology The Nanobiology Institute at Yale's West Campus #12;#12;I n energy. The potential for discovery is extraordinary. Yale scientists are exploring a new frontier within

  5. Assessing computational methods and science policy in systems biology

    E-Print Network [OSTI]

    Castillo, Andrea R. (Andrea Redwing)

    2009-01-01

    In this thesis, I discuss the development of systems biology and issues in the progression of this science discipline. Traditional molecular biology has been driven by reductionism with the belief that breaking down a ...

  6. The Evolutionary Systems Biology Team Synthetic Biology/Citizen Science Post-doctoral position

    E-Print Network [OSTI]

    The Evolutionary Systems Biology Team Synthetic Biology/Citizen Science Post-doctoral position We in citizen science projects.The post-doc will join the extended CRI lab that includes synthetic and systems-sourcing, DIY approaches and gamification as part of a new European- funded project, Citizen CyberLab - a three

  7. Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Atmospheric Sciences Materials Science and Engineering Mathematics Physics Environment Safety and Health More Science Home | Science & Discovery | More Science | Biology SHARE...

  8. National Laboratory] Basic Biological Sciences(59) Biological...

    Office of Scientific and Technical Information (OSTI)

    Achievements of structural genomics Terwilliger, Thomas C. Los Alamos National Laboratory Basic Biological Sciences(59) Biological Science Biological Science Abstract Not...

  9. Biological Science courses BE 513 Molecuar and Celluar Biology

    E-Print Network [OSTI]

    Fang-Yen, Christopher

    Biological Science courses BE 513 Molecuar and Celluar Biology BE 555 Nanoscale Systems Biology. BIOM 501 Mechanisms of Disease and Therapeutic BIOM 600 Cell Biology BMB 508 Molecular Biophysics I BMB 509 Macromolecular Biophysics II BMB 567 Bioinorganic Chemistry BMB 590 Biological Physics BMB 614

  10. Biology & Biomedical Sciences ACADEMIC PROGRAM

    E-Print Network [OSTI]

    Gereau, Robert W. IV

    Biology & Biomedical Sciences ACADEMIC PROGRAM GUIDELINES Programs in Cell & Molecular Biology Developmental, Regenerative and Stem Cell Biology Molecular Cell Biology Molecular Genetics & Genomics Molecular Microbiology & Microbial Pathogenesis #12;PAGE 2 GUIDELINES TO THE PROGRAMS IN CELL AND MOLECULAR BIOLOGY

  11. Biological Sciences http://www.clas.wayne.edu/biology/

    E-Print Network [OSTI]

    Finley Jr., Russell L.

    Biological Sciences http://www.clas.wayne.edu/biology/ Divisions: Evolutionary and Organismal Biology Molecular Biology and Biotechnology Cellular, Developmental, and Neurobiology #12;Biological Sciences http://www.clas.wayne.edu/biology/ · Cell Biology and Cytogenetics (Beningo, Tucker, Greenberg

  12. Rank 1995-96 1996-97 1997-98 1998-99 1999-00 2000-01 2001-02 2002-03 2003-04 1 Biological Sciences Biological Sciences Biological Sciences Biological Sciences Biological Sciences Biological Sciences Biological Sciences Biological Sciences Biological Scien

    E-Print Network [OSTI]

    Ullrich, Paul

    Engineering Sociology 3 Sociology 3 Animal Science Animal Science Biochemistry Animal Science Biochem Biological Sciences Biological Sciences Biological Sciences 2 Biochemistry Biochemistry Biochemistry Economics 4 Political Science 2 Political Science 2 Human Development Biochemistry Biochemistry Political

  13. Department of Energy's Biological and Environmental Research Strategic Data Roadmap for Earth System Science

    SciTech Connect (OSTI)

    Williams, Dean N.; Palanisamy, Giri; Shipman, Galen; Boden, Thomas A.; Voyles, Jimmy W.

    2014-04-25

    Rapid advances in experimental, sensor, and computational technologies and techniques are driving exponential growth in the volume, acquisition rate, variety, and complexity of scientific data. This wealth of scientifically meaningful data has tremendous potential to lead to scientific discovery. However, to achieve scientific breakthroughs, these data must be exploitable—they must be analyzed effectively and efficiently and the results shared and communicated easily within the wider Department of Energy’s (DOE’s) Biological and Environmental Research (BER) Climate and Environmental Sciences Division (CESD) community. The explosion in data complexity and scale makes these tasks exceedingly difficult to achieve, particularly given that an increasing number of disciplines are working across techniques, integrating simulation and experimental or observational results (see Table 5 in Appendix 2). Consequently, we need new approaches to data management, analysis, and visualization that provide research teams with easy-to-use and scalable end-to-end solutions. These solutions must facilitate (and where feasible, automate and capture) every stage in the data lifecycle (shown in Figure 1), from collection to management, annotation, sharing, discovery, analysis, and visualization. In addition, the core functionalities are the same across climate science communities, but they require customization to adapt to specific needs and fit into research and analysis workflows. To this end, the mission of CESD’s Data and Informatics Program is to integrate all existing and future distributed CESD data holdings into a seamless and unified environment for the acceleration of Earth system science.

  14. Science Faculty Department of Biology

    E-Print Network [OSTI]

    Richner, Heinz

    Science Faculty Department of Biology Zoological Institute Community Ecology 1 December 2006 Hans-Sigrist-Symposium: Biological Invasions Hans-Sigrist-Stiftung 9.00 Prof. Dr. David M Richardson (Centre for Invasion Biology. Dr. Bruno Baur (Conservation Biology, Department of Integrative Biology, University of Basel

  15. Biology & Biomedical Sciences ACADEMIC PROGRAM

    E-Print Network [OSTI]

    Gereau, Robert W. IV

    Biology & Biomedical Sciences ACADEMIC PROGRAM GUIDELINES Programs in Cell & Molecular Biology Molecular Microbiology & Microbial Pathogenesis Overview of the Programs in Cell and Molecular Biology Graduate training in Cell and Molecular Biology at Washington University is offered by the Programs in Cell

  16. CollegeofScience Biological Sciences

    E-Print Network [OSTI]

    Hickman, Mark

    ,populations,and even ecosystems. Our courses will help prepare you for a career in biology,be it in biodiversity

  17. BACHELOR OF SCIENCE BIOLOGY GENERAL OPTION

    E-Print Network [OSTI]

    Kemp, Brian M.

    * OR 201 Physics 4 hrs. PHYSICS 102* OR 202 Physics 4 hrs. General Biology Option Requirements: CellBACHELOR OF SCIENCE ­ BIOLOGY GENERAL OPTION A Bachelor of Science degree from Washington State Requirements: Grade BIOLOGY 106 General Biology 4 hrs. BIOLOGY 107 General Biology 4 hrs. BIOLOGY 301 General

  18. computational modeling of biological systems

    E-Print Network [OSTI]

    $author.value

    Faculty. Faculty listing for "computational modeling of biological systems" ... Research Interests: computational modeling of biological systems.

  19. BACHELOR OF SCIENCE BIOLOGY ECOLOGY & EVOLUTIONARY BIOLOGY OPTION

    E-Print Network [OSTI]

    Kemp, Brian M.

    BACHELOR OF SCIENCE ­ BIOLOGY ECOLOGY & EVOLUTIONARY BIOLOGY OPTION A Bachelor of Science degree hours must be upper division coursework. A B.S. in Biology requires a minimum of 19 semester hours of core BIOLOGY courses (BIOLOGY 106, 107, 301, 372 and 405 or 403). An additional 21 semester hours

  20. On Biology as an Emergent Science

    E-Print Network [OSTI]

    H. Pierre Noyes

    2007-05-31

    Biology is considered here as an "emergent science" in the sense of Anderson and of Laughlin and Pines. It is demonstrated that a straightforward mathematical definition of "biological system" is useful in showing how biology differs in structure from the lower levels in Anderson's "More is Different" hierarchy. Using cells in a chemostat as a paradigmatic exemplar of a biological system, it is found that a coherent collection of metabolic pathways through a single cell in the chemostat also satisfies the proposed definition of a biological system. This provides a theoretical and mathematical underpinning for Young's fundamental model of biological organization and integration. Evidence for the therapeutic efficacy of Young's method of analysis is provided by preliminary results of clinical trials of a specific application of Young's model to the treatment of cancer cachexia.

  1. Biological Engineering integrates life sciences

    E-Print Network [OSTI]

    Chen, Tsuhan

    of biological systems. Biological Engineering impacts the well-being of humans, plants, and animals through and global challenges such as ensuring safe and sustainable food and energy supplies, protecting natural agencies. Products of their efforts help ensure a safe and adequate supply of food and water, create new

  2. Systems biology approach to bioremediation

    E-Print Network [OSTI]

    Chakraborty, R.

    2013-01-01

    aspects of the systems biology approach (metagenomics withthe use of a number of sytems biology parameters can revealRL, Banfield JF: Systems Biology: functional analysis of

  3. The Division of Biology & Biomedical Sciences

    E-Print Network [OSTI]

    Gereau, Robert W. IV

    The Division of Biology & Biomedical Sciences what will YOU discover? #12;620students more than 470faculty 36departments 12programs and one YOU. DBBS Division of Biology and Biomedical Sciences Washington. The Division of Biology and Biomedical Sciences (DBBS) is ideally positioned to foster the interdisciplinary

  4. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Genomics and Systems Biology LANL leads the world in computational finishing of microbial genomes Read caption + In 2013, Los Alamos scientist Richard Sayre and his team...

  5. Systems Biology | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ORNL brings together multidisciplinary expertise and special facilities in genomics, computational biology, plant sciences, microbiology, microbial ecology, biophysics,...

  6. Arts & Sciences Biology, B.A.

    E-Print Network [OSTI]

    New Mexico, University of

    6/7/13 Arts & Sciences Biology, B.A. Broad Learning Goals A. Understand basic biological principles, and appreciate the breadth of modern biology. B. Understand and apply the scientific principle to conceptual or experimental problems in biology. C. Present biological data, and interpretations of the data, in written

  7. Biochemistry & Molecular Biology Department of Environmental and Biomolecular Systems

    E-Print Network [OSTI]

    Chapman, Michael S.

    Biochemistry & Molecular Biology Department of Environmental and Biomolecular Systems Program Requirement Checklists Fall 2007 ­ Summer 2008 Master of Science ­ Biochemistry and Molecular Biology.............................................................2 Doctor of Philosophy ­ Biochemistry and Molecular Biology

  8. MASTER OF SCIENCE STUDIES IN BIOLOGY

    E-Print Network [OSTI]

    Hong, Don

    Ver. 1.15 MASTER OF SCIENCE STUDIES IN BIOLOGY GUIDE FOR APPLICANTS, GRADUATE STUDENTS AND GRADUATE Biology and Ecology Physiology and Cellular/Molecular Biology Research Tools COURSE LOADS AND RECOMMENDED.......................................................................................................................................12 Change of Thesis Advisor Registration for Biological Research Thesis Proposal Registration

  9. Computational Biology | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Computational Biology SHARE Computational Biology Computational Biology research encompasses many important aspects including molecular biophysics for bio-energy, genetic level...

  10. School of Biological Sciences Student Handbook

    E-Print Network [OSTI]

    Trudgett, Alan

    School of Biological Sciences Student Handbook 2014­2015 #12;Student Handbook 2014-2015 1 WELCOME............................................................................................41 #12;Student Handbook 2014-2015 2 Queen's University Library

  11. NATIONAL CENTRE FOR BIOLOGICAL SCIENCES Annual Maintenance Contract for Electrical Systems in

    E-Print Network [OSTI]

    Udgaonkar, Jayant B.

    Maintenance Contract for Electrical systems including substations in Mandara hostel-CB site, NCBS : Rs.47,729.00 4. COST OF TENDER DOCUMENT : Rs. 500/- 5. SALE PERIOD : 13/12/2013 TO 23/12/2013 6. TIME:________________DATE:____________ __________________________________ FOR A SUM OF RS. ________________ TOWARDS __________________________________THE COST OF TENDER DOCUMENT

  12. 7th Annual Systems Biology Symposium: Systems Biology and Engineering

    SciTech Connect (OSTI)

    Galitski, Timothy P.

    2008-04-01

    Systems biology recognizes the complex multi-scale organization of biological systems, from molecules to ecosystems. The International Symposium on Systems Biology has been hosted by the Institute for Systems Biology in Seattle, Washington, since 2002. The annual two-day event gathers the most influential researchers transforming biology into an integrative discipline investingating complex systems. Engineering and application of new technology is a central element of systems biology. Genome-scale, or very small-scale, biological questions drive the enigneering of new technologies, which enable new modes of experimentation and computational analysis, leading to new biological insights and questions. Concepts and analytical methods in engineering are now finding direct applications in biology. Therefore, the 2008 Symposium, funded in partnership with the Department of Energy, featured global leaders in "Systems Biology and Engineering."

  13. Biological and Chemical Sciences Department of Biological and Chemical Sciences

    E-Print Network [OSTI]

    and Organic Materials Chromatography Regulatory Science Synthesis and Characterization of Inorganic Materials Synthesis and Characterization of Organic Materials Research Centers International Center for Sensor Science, microbiology, molecular biophysics and biochem- istry; analytical chemistry, inorganic chemistry, materi- als

  14. VEHICLE OPERATING PROCEDURES DEPARTMENT OF BIOLOGICAL SCIENCE

    E-Print Network [OSTI]

    Ronquist, Fredrik

    VEHICLE OPERATING PROCEDURES DEPARTMENT OF BIOLOGICAL SCIENCE GENERAL INFORMATION Vehicles resposniblity and disciplinary action. Vehicles may be used by faculty or staff from other departments complete the vehicle usage agreement form certifying that they have a valid driver's license

  15. Department of Biological Sciences 2005 Funded Research

    E-Print Network [OSTI]

    Rock, Chris

    (U.S. Army) Breast Cancer Research Program, $423,146. Aquatic Toxicology - DOD-T9700-Ecological Risk Center for Science and Industry (IICSI), Baghdad. #12;Creation and Field Testing of Transgenic Cotton in Bioinformatics and Computational Biology. 2004- 2006. National Science Foundation, as subcontract from New Mexico

  16. Carbon Cycling and Biosequestration Integrating Biology and Climate Through Systems Science Report from the March 2008 Workshop

    SciTech Connect (OSTI)

    Graber, J.; Amthor, J.; Dahlman, R.; Drell, D.; Weatherwax, S.

    2008-12-01

    One of the most daunting challenges facing science in the 21st Century is to predict how Earth's ecosystems will respond to global climate change. The global carbon cycle plays a central role in regulating atmospheric carbon dioxide (CO{sub 2}) levels and thus Earth's climate, but our basic understanding of the myriad of tightly interlinked biological processes that drive the global carbon cycle remains limited at best. Whether terrestrial and ocean ecosystems will capture, store, or release carbon is highly dependent on how changing climate conditions affect processes performed by the organisms that form Earth's biosphere. Advancing our knowledge of biological components of the global carbon cycle is thus crucial to predicting potential climate change impacts, assessing the viability of climate change adaptation and mitigation strategies, and informing relevant policy decisions. Global carbon cycling is dominated by the paired biological processes of photosynthesis and respiration. Photosynthetic plants and microbes of Earth's land-masses and oceans use solar energy to transform atmospheric CO{sub 2} into organic carbon. The majority of this organic carbon is rapidly consumed by plants or microbial decomposers for respiration and returned to the atmosphere as CO{sub 2}. Coupling between the two processes results in a near equilibrium between photosynthesis and respiration at the global scale, but some fraction of organic carbon also remains in stabilized forms such as biomass, soil, and deep ocean sediments. This process, known as carbon biosequestration, temporarily removes carbon from active cycling and has thus far absorbed a substantial fraction of anthropogenic carbon emissions.

  17. Nutritional systems biology of type 2 diabetes

    E-Print Network [OSTI]

    Zhao, Y; Barrere-Cain, RE; Yang, X

    2015-01-01

    HF (2015) Circadian systems biology in Metazoa. BriefingsNutritional systems biology: defini- tions and approaches.PAPER Nutritional systems biology of type 2 diabetes Yuqi

  18. Some new directions in control theory inspired by systems biology

    E-Print Network [OSTI]

    Sontag, Eduardo

    Some new directions in control theory inspired by systems biology E.D. Sontag Abstract: This paper new theoretical problems arise naturally when addressing questions in the field of systems biology are in the midst of revolutionary developments in the biological sciences. Literally each day brings new dis

  19. STORER LIFE SCIENCES ENDOWMENT MAJOR ISSUES IN MODERN BIOLOGY

    E-Print Network [OSTI]

    Ishida, Yuko

    STORER LIFE SCIENCES ENDOWMENT PRESENTS MAJOR ISSUES IN MODERN BIOLOGY Philip DeVries Department of Biological Sciences University of New Orleans WHAT BUTTERFLIES TELL US ABOUT TROPICAL DIVERSITY Thursday as a Fellowship from the Smithsonian Institute. Sponsored by College of Biological Sciences Storer Life Sciences

  20. VEHICLE USAGE AGREEMENT DEPARTMENT OF BIOLOGICAL SCIENCE

    E-Print Network [OSTI]

    Ronquist, Fredrik

    VEHICLE USAGE AGREEMENT DEPARTMENT OF BIOLOGICAL SCIENCE All drivers of vehicles must certify to the following: 1. I certify that I have a valid driver's license appropriate for the vehicle type and will abide belts. 2. I have read and understand the vehicle operating policies and procedures as defined

  1. Roadmap: Biology Organismal Biology Bachelor of Science [AS-BS-BSCI-ORBI

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Biology ­ Organismal Biology ­ Bachelor of Science [AS-BS-BSCI-ORBI] College of Arts/LNHD This roadmap is a recommended semester-by-semester plan of study for this major. However, courses General Elective 3 #12;Roadmap: Biology ­ Organismal Biology ­ Bachelor of Science [AS

  2. Taiwan International Graduate Program --Molecular and Biological Agricultural Sciences Introduction

    E-Print Network [OSTI]

    Taiwan International Graduate Program -- Molecular and Biological Agricultural Sciences Introduction Taiwan's academic interest in agricultural sciences began in earnest about 40 years ago with a breeding program in Taiwan's local rice varieties. Since then, various life science research institutes

  3. Modular design of biological systems

    E-Print Network [OSTI]

    Norville, Julie Erin, 1980-

    2012-01-01

    The focus of my research is the development of technology for building compound biological systems from simpler pieces. I designed BioScaffold parts, a family of variable regions that can be inserted into a DNA sequence ...

  4. Certificate in Geographic Information Science The Environmental Science programs and the Departments of Earth Sciences and Biology offer

    E-Print Network [OSTI]

    Gunawardena, Arunika

    Certificate in Geographic Information Science The Environmental Science programs and the Departments of Earth Sciences and Biology offer a Certificate in Geographic Information Science information science. This Certificate can be completed by a student in a BSc program, in addition

  5. Complex biological and bio-inspired systems

    SciTech Connect (OSTI)

    Ecke, Robert E [Los Alamos National Laboratory

    2009-01-01

    The understanding and characterization ofthe fundamental processes of the function of biological systems underpins many of the important challenges facing American society, from the pathology of infectious disease and the efficacy ofvaccines, to the development of materials that mimic biological functionality and deliver exceptional and novel structural and dynamic properties. These problems are fundamentally complex, involving many interacting components and poorly understood bio-chemical kinetics. We use the basic science of statistical physics, kinetic theory, cellular bio-chemistry, soft-matter physics, and information science to develop cell level models and explore the use ofbiomimetic materials. This project seeks to determine how cell level processes, such as response to mechanical stresses, chemical constituents and related gradients, and other cell signaling mechanisms, integrate and combine to create a functioning organism. The research focuses on the basic physical processes that take place at different levels ofthe biological organism: the basic role of molecular and chemical interactions are investigated, the dynamics of the DNA-molecule and its phylogenetic role are examined and the regulatory networks of complex biochemical processes are modeled. These efforts may lead to early warning algorithms ofpathogen outbreaks, new bio-sensors to detect hazards from pathomic viruses to chemical contaminants. Other potential applications include the development of efficient bio-fuel alternative-energy processes and the exploration ofnovel materials for energy usages. Finally, we use the notion of 'coarse-graining,' which is a method for averaging over less important degrees of freedom to develop computational models to predict cell function and systems-level response to disease, chemical stress, or biological pathomic agents. This project supports Energy Security, Threat Reduction, and the missions of the DOE Office of Science through its efforts to accurately model biological systems at the molecular and cellular level. The project's impact encompasses applications to biofuels, to novel sensors and to materials with broad use for energy or threat reduction. The broad, interdisciplinary approach of CNLS offers the unparalleled strength of combining science backgrounds and expertise -a unique and important asset in attacking the complex science of biological organisms. This approach also allows crossfertilization, with concepts and techniques transferring across field boundaries.

  6. Monte Carlo simulation in systems biology

    E-Print Network [OSTI]

    Schellenberger, Jan

    2010-01-01

    2 The history of Monte Carlo Sampling in Systems Biology 1.1simulation tools: the systems biology workbench and biospiceCellular and Molecular Biology. ASM Press, Washington

  7. Encyclopedia of Cognitive Sciences Computational Neuroscience: From Biology to Cognition

    E-Print Network [OSTI]

    O'Reilly, Randall C.

    Encyclopedia of Cognitive Sciences Computational Neuroscience: From Biology to Cognition Article;2 Computational Neuroscience: From Biology to Cognition Introduction This article describes computer models to relatively low-level biology to cognition. Here, we consider models that try to span the gap between biology

  8. Systems biology approach to bioremediation

    SciTech Connect (OSTI)

    Chakraborty, R.; Wu, C. H.; Hazen, T. C.

    2012-01-01

    Bioremediation has historically been approached as a ?black box? in terms of our fundamental understanding. Thus it succeeds and fails, seldom without a complete understanding of why. Systems biology is an integrated research approach to study complex biological systems, by investigating interactions and networks at the molecular, cellular, community, and ecosystem level. The knowledge of these interactions within individual components is fundamental to understanding the dynamics of the ecosystem under investigation. Understanding and modeling functional microbial community structure and stress responses in environments at all levels have tremendous implications for our fundamental understanding of hydrobiogeochemical processes and the potential for making bioremediation breakthroughs and illuminating the ?black box?.

  9. Systems Science and Engineering

    E-Print Network [OSTI]

    Suzuki, Masatsugu

    . Analysis of Variability in Systems II 4 ISE 370. Industrial Automation and Control .4 Humanities or social447 Systems Science and Industrial Engineering UNDERGRADUATE PROGRAMS The bachelor of science program in industrial and systems engineering is a new program within the Watson School. The curriculum

  10. School of Biological Sciences Bio Sci Student Affairs

    E-Print Network [OSTI]

    Rose, Michael R.

    Affairs Biological Sciences III Building #519 on the UCI campus map Hours: Mondays: 10am-12pm and 1pm for CHP students) Satisfies Social and Behavioral Sciences general education requirement (Category III

  11. Renewable Hydrogen Production from Biological Systems

    Broader source: Energy.gov (indexed) [DOE]

    Hydrogen Production from Biological Systems Matthew Posewitz Colorado School of Mines DOE Biological Hydrogen Production Workshop September 24 th , 2013 H 2 production PSIIPSI...

  12. SYSTEMS BIOLOGY Accurate information transmission

    E-Print Network [OSTI]

    Tsimring, Lev S.

    SYSTEMS BIOLOGY Accurate information transmission through dynamic biochemical signaling networks) and variability in cellular states (extrinsic noise) degrade information transmitted through signaling networks-induced information loss. In the extracellular signal­regulated kinase (ERK), calcium (Ca2+ ), and nuclear factor

  13. n. ISBN Title Subject 1 9780444519245 Comprehensive Molecular Insect Science Agricultural and Biological Sciences

    E-Print Network [OSTI]

    Malerba, Donato

    and Molecular Biology 21 9780080967011 Comprehensive Polymer Science Chemical Engineering 22 9780444531537 Comprehensive Semiconductor Science and Technology Chemical Engineering 23 9780444527455 Encyclopedia of Electrochemical Power Sources Chemical Engineering 24 9780080878621 Polymer Science: A Comprehensive Reference

  14. Computational Modelling in Systems and Synthetic Biology

    E-Print Network [OSTI]

    Romero-Campero, Francisco J.

    modules Networks Cells Colonies Systems Biology and Synthetic Biology #12;Stochasticity is important processes. Executable semantics. o Modularity in cellular systems, especially in gene regulatory networks been successfully applied. Monika Heiner, David Gilbert, Robin Donaldson. Petri Nets for Systems

  15. Biochemistry and Molecular Biology Program College of Science and Management

    E-Print Network [OSTI]

    Northern British Columbia, University of

    FACH06-11 Biochemistry and Molecular Biology Program College of Science and Management Senior, in conjunction with the Biochemistry and Molecular Biology Program, invites applications for a full-time eight support for undergraduate courses in the Biochemistry and Molecular Biology major. Duties include

  16. JIBS | Joint Institute for Biological Sciences | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    joint institute is located close to ORNL's Laboratory for Comparative and Functional Genomics, other biomolecular sciences research laboratories, and the Environmental Sciences...

  17. Systems biology of the cardiac hypoxia response in Drosophila

    E-Print Network [OSTI]

    Feala, Jacob Daniel

    2008-01-01

    in Molecular Systems Biology , volume 3, article number 99,appear in Molecular Systems Biology. The dissertation authoret al. (2003) The systems biology markup language (SBML): a

  18. Systems biology of Microbial Communities

    SciTech Connect (OSTI)

    Navid, A; Ghim, C; Fenley, A; Yoon, S; Lee, S; Almaas, E

    2008-04-11

    Microbes exist naturally in a wide range of environments, spanning the extremes of high acidity and high temperature to soil and the ocean, in communities where their interactions are significant. We present a practical discussion of three different approaches for modeling microbial communities: rate equations, individual-based modeling, and population dynamics. We illustrate the approaches with detailed examples. Each approach is best fit to different levels of system representation, and they have different needs for detailed biological input. Thus, this set of approaches is able to address the operation and function of microbial communities on a wide range of organizational levels.

  19. REVIEW ARTICLE Profile likelihood in systems biology

    E-Print Network [OSTI]

    Timmer, Jens

    REVIEW ARTICLE Profile likelihood in systems biology Clemens Kreutz1,2 , Andreas Raue1,3 , Daniel for Advanced Studies (FRIAS), University of Freiburg, Germany 3 Institute of Bioinformatics and Systems Biology of Freiburg, Germany 5 BIOSS Centre for Biological Signalling Studies, University of Freiburg, Germany

  20. Psychology General Of1ice P217 Biological Sciences Building

    E-Print Network [OSTI]

    Machel, Hans

    Psychology General Of1ice P217 Biological Sciences Building Edmonton, Alberta. Robert Cook ----------------------------------------------- Professor of Psychology Dean in 1986, when he joined the Department of Psychology as an assistant

  1. STOCHASTIC MODELS IN BIOLOGICAL SCIENCES BANACH CENTER PUBLICATIONS, VOLUME 80

    E-Print Network [OSTI]

    Reichenbach, Tobias

    OF MATHEMATICS POLISH ACADEMY OF SCIENCES WARSZAWA 2008 GENERIC PRINCIPLES OF ACTIVE TRANSPORT MAURO MOBILIA. These stochastic many-body fea- tures characterize transport processes in biology, soft condensed matter and

  2. Publications: Harold G. Marshall Department of Biological Sciences

    E-Print Network [OSTI]

    Horth, Lisa

    1 Publications: Harold G. Marshall Department of Biological Sciences Old Dominion University. Toxigenic Pfiesteria species ­ Updates on biology, ecology, toxins, and impacts. Harmful Algae, 14 Ecosystems. In: G. Likens (ed.) Encyclopedia of Inland Waters. Elsevier Ltd, Kidlington, U.K. Vol. 1, pp. 97

  3. Experiment design for systems biology

    E-Print Network [OSTI]

    Apgar, Joshua Farley

    2009-01-01

    Mechanism-based chemical kinetic models are increasingly being used to describe biological signaling. Such models serve to encapsulate current understanding of pathways and to enable insight into complex biological processes. ...

  4. Supporting Advanced Scientific Computing Research Basic Energy Sciences Biological

    E-Print Network [OSTI]

    Supporting Advanced Scientific Computing Research · Basic Energy Sciences · Biological and Environmental Research · Fusion Energy Sciences · High Energy Physics · Nuclear Physics What my students Code ­http://code.google.com/p/net-almanac/ ­Beta release this week #12;Contact Information Jon Dugan

  5. Computers are from Mars, Organisms are from Venus: Interrelationship guide to Biology and Computer Science

    E-Print Network [OSTI]

    Kim, Junhyong

    . In recent years one active area of interdisciplinary merger has been biology and computer science. The noise youthful sciences? There is a kind of a natural affinity between biology and computer science. E is to "get over the mythical idea of an expert." Biology meets Computer Science: Computational Biology

  6. 6/06/09 BS in Biology, Concentration in Microbiology Bachelor of Science in Biology: Concentration in Microbiology

    E-Print Network [OSTI]

    6/06/09 BS in Biology, Concentration in Microbiology Bachelor of Science in Biology: Concentration in Microbiology Department of Biology College of Science and Engineering Undergraduate Programs Microbiology, but also in chemistry, physics, mathematics, and other areas of biology. Within the undergraduate program

  7. A CONSTRAINED OBJECT APPROACH TO SYSTEMS BIOLOGY

    E-Print Network [OSTI]

    Krovi, Venkat

    A CONSTRAINED OBJECT APPROACH TO SYSTEMS BIOLOGY by Manu Pushpendran September 2006 A thesis towards Dr. Daniel Fischer for allowing me to audit his course on Computational Biology which helped me gain significant insights on many biological terms. Special thanks to Dr. Gokul Das from Roswell Park

  8. THE EMERGENCE OF MEANING IN BIOLOGICAL SYSTEMS

    E-Print Network [OSTI]

    THE EMERGENCE OF MEANING IN BIOLOGICAL SYSTEMS THESIS SUBMITTED FOR THE DEGREE OF "DOCTOR OF MEANING IN BIOLOGICAL SYSTEMS THESIS SUBMITTED FOR THE DEGREE OF "DOCTOR OF PHILOSOPHY" BY URI HERSHBERG and what its functions are. Likewise we study the immune system as an example of cognitive perception

  9. Engineering Inspired from biological systems, nanotechnology (and

    E-Print Network [OSTI]

    Chemical Engineering Inspired from biological systems, nanotechnology (and more recently at Northeastern University in Boston. His research explores the use of nanotechnology in numerous applications

  10. Biology

    E-Print Network [OSTI]

    Bailey, Charlotte M

    Nightty Enrichment} is a FREE tutoring program to neip students succeed in ?rst year. Biology science courses. CUSINE offers eyening tutoring right in your own ...

  11. Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology

    E-Print Network [OSTI]

    Ussery, David W.

    Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology Visualisation of Large Amounts of Data Dave Ussery 27 February, 2008 #12;Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology #12;Comparative Microbial Genomics group

  12. Postdoctoral Association Bulletin Biological Sciences Division

    E-Print Network [OSTI]

    discussed attended these meetings and posted blogs about choices. We will update information on the blog kolla@uchicago.edu or post to the blog: http of Science manages and administers Science & Technology Policy Fellowships in five program areas to provid

  13. Method of measurement in biological systems

    DOE Patents [OSTI]

    Turteltaub, K.W.; Vogel, J.S.; Felton, J.S.; Gledhill, B.L.: Davis, J.C.; Stanker, L.H.

    1993-05-11

    A method is disclosed of quantifying molecules in biological substances, comprising: selecting a biological host in which radioisotopes are present in concentrations equal to or less than those in the ambient biosphere; preparing a long-lived radioisotope labeled reactive chemical specie; administering the chemical specie to the biological host in doses sufficiently low to avoid significant overt damage to the biological system; allowing a period of time to elapse sufficient for dissemination and interaction of the chemical specie with the host throughout the biological system of the host; isolating a reacted fraction of the biological substance from the host in a manner sufficient to avoid contamination of the substance from extraneous sources; converting the fraction of biological substance by suitable means to a material which efficiently produces charged ions in at least one of several possible ion sources without introduction of significant isotopic fractionation; and measuring the radioisotope concentration in the material by means of direct isotopic counting.

  14. Postgraduate Handbook School of Biological Sciences

    E-Print Network [OSTI]

    Hickman, Mark

    practical skills in research science. Our graduates gain diverse jobs all over the world, from remote conservation.' Out of high school, Rachel was offered entrance into the Chemistry Honours Program at UC

  15. Complexity and Systems Biology of Microbial Biofuels

    E-Print Network [OSTI]

    Rand, David

    Complexity and Systems Biology of Microbial Biofuels 20-24 June 2011 (All and issues Theme: Biofuel systems and issues (Chair: Nigel Burroughs) 13 (Bielefeld) Biofuels from algae- challenges for industrial levels

  16. Emily Stuart Minor Department of Biological Sciences

    E-Print Network [OSTI]

    Minor, Emily

    in the central US: using random forests to guide site selection for wind energy projects. Conservation Biology 28 on native bird species in an urban landscape. Ecological Applications 24: 2132-2143. Lowenstein, D.M., K on floral resources and flower-visiting insects across an urban landscape. Oikos 122: 682-694 2012 Minor, E

  17. Systems Biology Knowledgebase for a New Era in Biology A Genomics:GTL Report from the May 2008 Workshop

    SciTech Connect (OSTI)

    Gregurick, S.; Fredrickson, J. K.; Stevens, R.

    2009-03-01

    Biology has entered a systems-science era with the goal to establish a predictive understanding of the mechanisms of cellular function and the interactions of biological systems with their environment and with each other. Vast amounts of data on the composition, physiology, and function of complex biological systems and their natural environments are emerging from new analytical technologies. Effectively exploiting these data requires developing a new generation of capabilities for analyzing and managing the information. By revealing the core principles and processes conserved in collective genomes across all biology and by enabling insights into the interplay between an organism's genotype and its environment, systems biology will allow scientific breakthroughs in our ability to project behaviors of natural systems and to manipulate and engineer managed systems. These breakthroughs will benefit Department of Energy (DOE) missions in energy security, climate protection, and environmental remediation.

  18. Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology

    E-Print Network [OSTI]

    Langmead, Christopher James

    Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology Alexandre Donz. The dynamics of biological processes are often modeled as systems of nonlinear ordinary differential equations problem for nonlinear dynamical systems. That is, for systems of nonlinear ordinary differential equations

  19. BACHELOR OF SCIENCE IN BIOLOGY (Suggested 4 Year Plan)

    E-Print Network [OSTI]

    Benos, Panayiotis "Takis"

    Credit hours per academic year 32-33 FOURTH YEAR, 1ST TERM CREDITS FOURTH YEAR, 2ND TERM CREDITS UpperBACHELOR OF SCIENCE IN BIOLOGY (Suggested 4 Year Plan) FIRST YEAR, 1ST TERM CREDITS FIRST YEAR, 2ND hours per academic year 30 SECOND YEAR, 1ST TERM CREDITS SECOND YEAR, 2ND TERM CREDITS BIOL 0203

  20. BACHELOR OF SCIENCE IN BIOLOGY EDUCATION (Suggested 4 Year Plan)

    E-Print Network [OSTI]

    Benos, Panayiotis "Takis"

    Credits per academic year 32-33 FOURTH YEAR, 1ST TERM CREDITS FOURTH YEAR, 2ND TERM CREDITS EDUC 1307BACHELOR OF SCIENCE IN BIOLOGY EDUCATION (Suggested 4 Year Plan) FIRST YEAR, 1ST TERM CREDITS FIRST YEAR, 2ND TERM CREDITS ENG 0101 English Composition I 3 ENG 0102 English Composition II 3 BIO 0101

  1. Computer Science Department Technion, IIT Algorithms in Computational Biology 236522

    E-Print Network [OSTI]

    Beimel, Amos

    Computer Science Department Technion, IIT Algorithms in Computational Biology ­ 236522 Moed A Exam Spring 2007, 24.9.07 Lecturer: Shlomo Moran TA: Ilan Gronau - Exam Duraion: 3 hours - The Exam has 3 structure can be used to answer the desired queries. 2. (23 pts) Denote by Si the sequence S after deletion

  2. Division of Biology Faculty of Natural Sciences

    E-Print Network [OSTI]

    Rosso, Lula

    , geochemists and ocean/Earth System modellers. During the PhD they will acquire key skills in theoretical

  3. Frontiers in Biological Sciences Seminar Series Presents

    E-Print Network [OSTI]

    Microbial Ecology and Evolution in an Acid Mine Drainage-Based Model System Speaker: Dr. Jill Banfield

  4. Earth Systems Science Earth Systems Science at UNH

    E-Print Network [OSTI]

    Pringle, James "Jamie"

    Earth Systems Science Earth Systems Science at UNH THE UNH Institute for the Study of Earth, Oceans, and Space (EOS) Earth Systems Research Center is dedicated to understanding the Earth as an integrative scientists and students study the Earth's ecosystems, atmosphere, water, and ice using field measurements

  5. Request for Travel Funds for Systems Radiation Biology Workshop

    SciTech Connect (OSTI)

    Barcellos-Hoff, Mary Helen

    2014-03-22

    The 3rd International Systems Radiation Biology Workshop brought together the major European, US and Japanese research programs on radiation risk as well as selected experts representing systems biological approaches to discuss how the new methodologies could be best exploited for low dose research. A significant part of the workshop was devoted to discussions organised as breakout group sessions. To facilitate discussions number of participants was limited to 60 persons. To achieve the goals of this symposium in this international conference, support from DOE is vital. Hence, this proposal requested support in the amount of $15,000 to cover the travel expenses of international experts and radiation biology scientists from the United States. This supporting mechanism was clearly identified to the selected US participants as a conference support award from the DOE (See attached PDF). The workshop was an outstanding opportunity to strengthen interactions between leading experts in the emerging areas of radiation sciences, and will also provide opportunities for younger scientists to meet with experts and discuss their results. This workshop was designed to endorse active engagement in international collaboration. A major objective of this conference was to effectively communicate research results, in order to ensure that current thinking reflects sound science of radiation biology. Further, this international event addressed the use and success of scientific initiatives in radiation biology for policymakers, standard-setters, and the general public.

  6. Modular languages for systems and synthetic biology 

    E-Print Network [OSTI]

    Pedersen, Michael

    2010-01-01

    Systems biology is a rapidly growing field which seeks a refined quantitative understanding of organisms, particularly studying how molecular species such as metabolites, proteins and genes interact in cells to form the ...

  7. December 1, 2014 TO: Department Chairs in the College of Engineering, Biological Systems Engineering,

    E-Print Network [OSTI]

    Sheridan, Jennifer

    Engineering, Chemistry, Computer Sciences, Geoscience, Mathematics, Physics, and Statistics Dean's OfficeDecember 1, 2014 TO: Department Chairs in the College of Engineering, Biological Systems of Engineering FROM: Ian M. Robertson, Dean RE: Harvey Spangler Award for Technology Enhanced Instruction

  8. MASTER OF SCIENCE Information Systems

    E-Print Network [OSTI]

    Yang, Eui-Hyeok

    MASTER OF SCIENCE Information Systems LEADING INFORMATION INNOVATION www.stevens.edu/howe/IS #12. Organizations are upgrading their information systems (IS) and switching to newer, faster and more mobile and management insight. The Master of Science in Information Systems at Stevens prepares students and current

  9. Importance of systems biology in engineering microbes for biofuel...

    Office of Scientific and Technical Information (OSTI)

    Importance of systems biology in engineering microbes for biofuel production Citation Details In-Document Search Title: Importance of systems biology in engineering microbes for...

  10. Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress...

    Office of Scientific and Technical Information (OSTI)

    Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses Citation Details In-Document Search Title: Systems biology analysis of Zymomonas mobilis ZM4 ethanol...

  11. Method of measurement in biological systems

    DOE Patents [OSTI]

    Turteltaub, Kenneth W. (Livermore, CA); Vogel, John S. (Union City, CA); Felton, James S. (Danville, CA); Gledhill, Barton L. (Alamo, CA); Davis, Jay C. (Livermore, CA); Stanker, Larry H. (Livermore, CA)

    1993-05-11

    Disclosed is a method of quantifying molecules in biological substances, comprising: a. selecting a biological host in which radioisotopes are present in concentrations equal to or less than those in the ambient biosphere, b. preparing a long-lived radioisotope labeled reactive chemical specie, c. administering said chemical specie to said biological host in doses sufficiently low to avoid significant overt damage to the biological system thereof, d. allowing a period of time to elapse sufficient for dissemination and interaction of said chemical specie with said host throughout said biological system of said host, e. isolating a reacted fraction of the biological substance from said host in a manner sufficient to avoid contamination of said substance from extraneous sources, f. converting said fraction of biological substance by suitable means to a material which efficiently produces charged ions in at least one of several possible ion sources without introduction of significant isotopic fractionation, and, g. measuring the radioisotope concentration in said material by means of direct isotopic counting.

  12. Method of measurement in biological systems

    DOE Patents [OSTI]

    Turteltaub, Kenneth W. (Livermore, CA); Vogel, John S. (Union City, CA); Felton, James S. (Danville, CA); Gledhill, Barton L. (Alamo, CA); Davis, Jay C. (Livermore, CA)

    1994-01-01

    Disclosed is a method of quantifying molecules in biological substances comprising: a. selecting a biological host in which radioisotopes are present in concentrations equal to or less than those in the ambient biosphere, b. preparing a long-lived radioisotope labeled reactive chemical specie, c. administering said chemical specie to said biological host in doses sufficiently low to avoid significant overt damage to the biological system thereof, d. allowing a period of time to elapse sufficient for dissemination and interaction of said chemical specie with said host throughout said biological system of said host, e. isolating a reacted fraction of the biological substance from said host in a manner sufficient to avoid contamination of said substance from extraneous sources, f. converting said fraction of biological substance by suitable means to a material which efficiently produces charged ions in at least one of several possible ion sources without introduction of significant isotopic fractionation, and, g. measuring the radioisotope concentration in said material by means of direct isotopic counting.

  13. Method of measurement in biological systems

    DOE Patents [OSTI]

    Turteltaub, K.W.; Vogel, J.S.; Felton, J.S.; Gledhill, B.L.; Davis, J.C.

    1994-12-27

    Disclosed is a method of quantifying molecules in biological substances comprising: a. selecting a biological host in which radioisotopes are present in concentrations equal to or less than those in the ambient biosphere, b. preparing a long-lived radioisotope labeled reactive chemical specie, c. administering the chemical specie to the biological host in doses sufficiently low to avoid significant overt damage to the biological system, d. allowing a period of time to elapse sufficient for dissemination and interaction of the chemical specie with the host throughout the biological system of the host, e. isolating a reacted fraction of the biological substance from the host in a manner sufficient to avoid contamination of the substance from extraneous sources, f. converting the fraction of biological substance by suitable means to a material which efficiently produces charged ions in at least one of several possible ion sources without introduction of significant isotopic fractionation, and, g. measuring the radioisotope concentration in the material by means of direct isotopic counting. 5 figures.

  14. BSc Biological Sciences Course Outline 1. Awarding institution The Royal Veterinary College

    E-Print Network [OSTI]

    Daley, Monica A.

    underpins an individual discipline or subject area. · Cognate sciences. · The political, social and economic1 BSc Biological Sciences Course Outline 1. Awarding institution The Royal Veterinary College 2. Final award Bachelor of Science 5. Programme Title Biological Sciences 6. Date of First Intake 2014 7

  15. Quantum information science and complex quantum systems

    E-Print Network [OSTI]

    Michael A. Nielsen

    2002-10-01

    What makes quantum information science a science? This paper explores the idea that quantum information science may offer a powerful approach to the study of complex quantum systems.

  16. Nuclear Systems Modeling, Simulation & Validation | Nuclear Science...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Research Areas Fuel Cycle Science & Technology Fusion Nuclear Science Isotope Development and Production Nuclear Security Science & Technology Nuclear Systems Modeling, Simulation...

  17. Symbolic Systems Biology: Theory and Methods, Jones and Bartlett Publishers 2010 On Statecharts for Biology

    E-Print Network [OSTI]

    Harel, David

    Symbolic Systems Biology: Theory and Methods, Jones and Bartlett Publishers 2010 On Statecharts for Biology Jasmin Fisher and David Harel Biology as Reactivity One of the central issues in software decade or so, we and others have carried out work on viewing biological systems as reactive systems

  18. Systems Biology of Organs on a Chip John Wikswo

    E-Print Network [OSTI]

    Wikswo, John

    1 Systems Biology of Organs on a Chip John Wikswo Fall, 2013 Undergraduates: PHYS 240 01 and BME 290B -- SpTp: Systems Biology Graduate students: PHYS 326 Theoretical and Experimental Systems Biology BME 395C -- SpTp: Systems Biology Meeting times: 2:35 ­ 3:50 Tuesdays and Thursdays, SC6837

  19. Edinburgh Research Explorer A framework for evolutionary systems biology

    E-Print Network [OSTI]

    Millar, Andrew J.

    Edinburgh Research Explorer A framework for evolutionary systems biology Citation for published version: Loewe, L 2009, 'A framework for evolutionary systems biology' BMC Systems Biology, vol 3, 27., 10 Systems Biology Publisher Rights Statement: © 2009 Loewe; licensee BioMed Central Ltd. This is an Open

  20. Integrating systems biology models and biomedical ontologies

    E-Print Network [OSTI]

    Hoehndorf, Robert; Dumontier, Michel; Gennari, John H.; Wimalaratne, Sarala; de Bono, Bernard; Cook, Daniel L.; Gkoutos, Georgios V.

    2011-08-11

    Integrating systems biology models and biomedical ontologies Robert Hoehndorf1*, Michel Dumontier2,3, John H Gennari4, Sarala Wimalaratne5, Bernard de Bono5, Daniel L Cook6,7 and Georgios V Gkoutos1 Abstract Background: Systems biology is an approach... in yeast [19] and includes a compartment anno- tated with Nucleus that contains, among others, the spe- cies G1, G2, S and M annotated with G1 phase, G2 phase, S phase and M phase, respectively. Within the model, the amounts of these species can be either 0...

  1. Computational Challenges in Systems Biology Allison P. Heatha

    E-Print Network [OSTI]

    Kavraki, Lydia E.

    Computational Challenges in Systems Biology Allison P. Heatha , Lydia E. Kavrakia,b,c a Department computational and experimental approaches to provide a system level understanding of biologi- cal function. Initial forays into computational systems biology have focused on a variety of biological networks

  2. Systems Biology of the JAK-STAT signalling pathway

    E-Print Network [OSTI]

    Timmer, Jens

    Systems Biology of the JAK-STAT signalling pathway Jens Timmer Center for Systems Biology Center of Freiburg http://www.fdm.uni-freiburg.de/jeti/ 1 #12;Outline · Systems Biology · JAK-STAT pathway of the Epo receptor · A dynamical model for JAK-STAT pathway · Observing the unobservable · In silico biology

  3. Detter, John C. [Los Alamos National Laboratory] Basic Biological

    Office of Scientific and Technical Information (OSTI)

    State of the Art for Autonomous Detection Systems using Genomic Sequencing Detter, John C. Los Alamos National Laboratory Basic Biological Sciences(59) Biological Science...

  4. Computational systems biology and in silico modeling of the

    E-Print Network [OSTI]

    Borenstein, Elhanan

    Computational systems biology and in silico modeling of the human microbiome Elhanan Borenstein Professor at the Santa Fe Institute. His research interests include computational and evolutionary systems is a complex biological system with numerous interacting components across multiple organizational levels

  5. Method for photo-altering a biological system to improve biological effect

    DOE Patents [OSTI]

    Hill, Richard A. (Irvine, CA); Doiron, Daniel R. (Santa Ynez, CA); Crean, David H. (Santa Barbara, CA)

    2000-08-01

    Photodynamic therapy is a new adjunctive therapy for filtration surgery that does not use chemotherapy agents or radiation, but uses pharmacologically-active sensitizing compounds to produce a titratable, localized, transient, post operative avascular conjunctiva. A photosensitizing agent in a biological system is selectively activated by delivering the photosensitive agent to the biological system and laser activating only a spatially selected portion of the delivered photosensitive agent. The activated portion of the photosensitive agent reacts with the biological system to obtain a predetermined biological effect. As a result, an improved spatial disposition and effectuation of the biological effect by the photosensitive agent in the biological system is achieved.

  6. Biological Computation as the Revolution of Complex Engineered Systems

    E-Print Network [OSTI]

    Gómez-Cruz, Nelson Alfonso

    2011-01-01

    Provided that there is no theoretical frame for complex engineered systems (CES) as yet, this paper claims that bio-inspired engineering can help provide such a frame. Within CES bio-inspired systems play a key role. The disclosure from bio-inspired systems and biological computation has not been sufficiently worked out, however. Biological computation is to be taken as the processing of information by living systems that is carried out in polynomial time, i.e., efficiently; such processing however is grasped by current science and research as an intractable problem (for instance, the protein folding problem). A remark is needed here: P versus NP problems should be well defined and delimited but biological computation problems are not. The shift from conventional engineering to bio-inspired engineering needs bring the subject (or problem) of computability to a new level. Within the frame of computation, so far, the prevailing paradigm is still the Turing-Church thesis. In other words, conventional engineering...

  7. KPFM and PFM of Biological Systems

    SciTech Connect (OSTI)

    Rodriguez, Brian [University College, Dublin; Kalinin, Sergei V [ORNL

    2011-01-01

    Surface potentials and electrostatic interactions in biological systems are a key element of cellular regulation and interaction. Examples include cardiac and muscular activity, voltage-gated ion channels, protein folding and assembly, and electroactive cells and electrotransduction. The coupling between electrical, mechanical, and chemical signals and responses in cellular systems necessitates the development of tools capable of measuring the distribution of charged species, surface potentials, and mechanical responses to applied electrical stimuli and vice versa, ultimately under physiological conditions. In this chapter, applications of voltage-modulated atomic force microscopy (AFM) methods including Kelvin probe force microscopy (KPFM) and piezoresponse force microscopy (PFM) to biological systems are discussed. KPFM is a force-sensitive non-contact or intermittent-contact mode AFM technique that allows electrostatic interactions and surface potentials to be addressed. Beyond long-range electrostatic interactions, the application of bias can lead to a mechanical response, e.g., due to linear piezoelectric coupling in polar biopolymers or via more complex electrotransduction and redox pathways in other biosystems. The use and development of PFM, based on direct electromechanical detection, to biological systems will also be addressed. The similarities and limitations of measuring surface potentials and electromechanical coupling in solution will be outlined.

  8. Simulation Methods for Optimal Experimental Design in Systems Biology

    E-Print Network [OSTI]

    Timmer, Jens

    Simulation Methods for Optimal Experimental Design in Systems Biology D. Faller Freiburg Center of a biological system, the authors conducted quantitative dynamic experiments from which the system structure and the parameters have to be deduced. Since biological systems have to cope with different environmental conditions

  9. Microfabrication of Biological Machines for Sensing and Locomotion Ritu Raman, Mechanical Science and Engineering

    E-Print Network [OSTI]

    Kilian, Kristopher A.

    Microfabrication of Biological Machines for Sensing and Locomotion Ritu Raman, Mechanical Science the autonomous and synchronous contraction of engineered cardiac muscle as an actuator for locomotion.[1] · We

  10. Earth System Science at Cornell Earth system sciences looks at the integrated whole of the planet,

    E-Print Network [OSTI]

    Walter, M.Todd

    Earth System Science at Cornell Earth system sciences looks at the integrated whole of the planet for earth system science range from nm to 1000's of kilometers. Advancing earth system science requires whose work contributes to an understanding of earth system science. We think that organizing ourselves

  11. Progress in Biophysics and Molecular Biology 97 (2008) 115157 Scale relativity theory and integrative systems biology

    E-Print Network [OSTI]

    Nottale, Laurent

    2008-01-01

    Progress in Biophysics and Molecular Biology 97 (2008) 115­157 Review Scale relativity theory and integrative systems biology: 2 Macroscopic quantum-type mechanics Laurent Nottalea,b , Charles Auffrayb Meudon, France b Functional Genomics and Systems Biology for Health, UMR 7091-LGN, CNRS/Pierre & Marie

  12. ELECTRICAL ENGINEERING AND COMPUTER SCIENCE INFORMATION SYSTEMS

    E-Print Network [OSTI]

    Wichmann, Felix

    FACULTY IV ELECTRICAL ENGINEERING AND COMPUTER SCIENCE INFORMATION SYSTEMS MANAGEMENT Master of Science STUDY GUIDE #12;#12;FACULTY IV ELECTRICAL ENGINEERING AND COMPUTER SCIENCE INFORMATION SYSTEMS | INFORMATION SYSTEMS MANAGEMENT Master of Science | Preface by the Dean of Studies 3 Dear Students

  13. Title of dissertation: NONLINEAR DYNAMICS IN BIOLOGICAL SYSTEMS

    E-Print Network [OSTI]

    Anlage, Steven

    ABSTRACT Title of dissertation: NONLINEAR DYNAMICS IN BIOLOGICAL SYSTEMS: ACTIN NETWORKS AND GENE in several cases. #12;NONLINEAR DYNAMICS IN BIOLOGICAL SYSTEMS: ACTIN NETWORKS AND GENE NETWORKS by Andrew Department of Physics Two problems in biological systems are studied: (i) experiments in microscale

  14. Chapter 1 Systems, Science and Study 5 Systems, Science, and

    E-Print Network [OSTI]

    Wright, Dawn Jeannine

    history; Internet and GIS; GIS as several businesses; systems`, science` and studies` OUTLINE 1 itself; Be familiar with a brief history of GIS; Recognize the sometimes invisible roles of GIS.4 A Brief History of GIS 1.5 Views of GIS 1.6 The Business of GIS 1.7 GISystems, GIScience, and GIStudies 1

  15. Viral Proteases Department of Biological Sciences, Columbia University, New York, New York 10027

    E-Print Network [OSTI]

    Tong, Liang

    Viral Proteases Liang Tong Department of Biological Sciences, Columbia University, New York, New is Associate Professor of Biological Sciences at Columbia University in New York, NY. He received his Ph York 10027 Received February 19, 2002 Contents I. Introduction 4609 II. Chymotrypsin-like Serine

  16. Modeling biological systems using Petri nets wimbos@gmail.com

    E-Print Network [OSTI]

    Theune, Mariët

    to Petri nets, they allow for different abstraction levels, making it possible to model biological networksModeling biological systems using Petri nets Wim Bos wimbos@gmail.com ABSTRACT Petri Nets (PNs) biological systems, or networks. As a lot of extensions to PNs exist, it is possible to model different

  17. Lessons Learned from Quantitative Dynamical Modeling in Systems Biology

    E-Print Network [OSTI]

    Timmer, Jens

    Lessons Learned from Quantitative Dynamical Modeling in Systems Biology Andreas Raue1,2 *. , Marcel of Physics, University of Freiburg, Freiburg, Germany, 2 Institute of Computational Biology, Helmholtz Center, Munich, Germany, 3 Systems Biology of Signal Transduction, German Cancer Research Center

  18. A Novel System for Rapidly Identifying Toxic Chemicals During Emergencies UROP Student: Arunkumaar Ganesan (Electrical Engineering and Computer Science)

    E-Print Network [OSTI]

    Bhavnani, Suresh K.

    A Novel System for Rapidly Identifying Toxic Chemicals During Emergencies UROP Student: Arunkumaar Ganesan (Electrical Engineering and Computer Science) Faculty Mentor: Suresh K. Bhavnani (Center for Computational Medicine and Biology) Co-authors: Clayton Scott (Electrical Engineering and Computer Science

  19. Environmental Science-Environmental Biology programs1 focus on environment-related issues using scientific, social

    E-Print Network [OSTI]

    Maxwell, Bruce D.

    Environmental Science-Environmental Biology programs1 focus on environment-related issues using of ecology and environmental science and related subjects such as policy, politics, law, economics, social been disturbed by human activities. The curriculum launches from a base in environmental science which

  20. Theory: Biological systems organize to maximize entropy production subject to information and biophysicochemical constraints.

    E-Print Network [OSTI]

    Vallino, Joseph J.

    Theory: Biological systems organize to maximize entropy production subject to information: biological systems store information within their metagenome. Therefore, we propose that abiotic systems that biological systems with greater information content will have higher entropy production rates than biological

  1. The radical-pair mechanism as a paradigm for the emerging science of quantum biology

    E-Print Network [OSTI]

    Kominis, I K

    2015-01-01

    The radical-pair mechanism was introduced in the 1960's to explain anomalously large EPR and NMR signals in chemical reactions of organic molecules. It has evolved to the cornerstone of spin chemistry, the study of the effect electron and nuclear spins have on chemical reactions, with the avian magnetic compass mechanism and the photosynthetic reaction center dynamics being prominent biophysical manifestations of such effects. In recent years the radical-pair mechanism was shown to be an ideal biological system where the conceptual tools of quantum information science can be fruitfully applied. We will here review recent work making the case that the radical-pair mechanism is indeed a major driving force of the emerging field of quantum biology.

  2. Using Systems Biology Approaches to Elucidate the Mechanisms of Arsenic Reduction in Shewanella Sp. ANA-3

    E-Print Network [OSTI]

    Watson, Ruth Pamela Tilus

    2015-01-01

    Towards environmental systems biology of Shewanella. Nature2009). Comparative systems biology across an evolutionaryfor sequence count data. Genome Biology 11, R106–R106. doi:

  3. The BioASP Library: ASP Solutions for Systems Biology

    E-Print Network [OSTI]

    Schaub, Torsten

    The BioASP Library: ASP Solutions for Systems Biology Martin Gebser, Arne K¨onig, Torsten Schaub--Today's molecular biology is confronted with enor- mous amounts of data, generated by new high-throughput tech- nologies, along with an increasing number of biological models available over web repositories. This poses

  4. Comparative Biomedical Sciences is one of five graduate fields associated with the Biological & Biomedical Sciences (BBS) Graduate Program. As an umbrella program, the BBS fosters an atmosphere

    E-Print Network [OSTI]

    Walter, M.Todd

    Background Comparative Biomedical Sciences is one of five graduate fields associated with the Biological & Biomedical Sciences (BBS) Graduate Program. As an umbrella program, the BBS fosters fields are members of the BBS Graduate Program: Comparative Biomedical Sciences Immunology & Infectious

  5. A Systems Approach to Service Science Research

    E-Print Network [OSTI]

    Glushko, Robert J.

    A Systems Approach to Service Science Research Service Science Faculty Workshop National Tsing Hua@ischool.berkeley.edu Plan for Today's Talk Motivating the Concept of "Service System" Making Sense of the Service System Concept Modeling Approaches for Service Systems "Point of View" in Service Systems Bridging the Front

  6. "Creating computational models of biological systems to better combat

    E-Print Network [OSTI]

    Zhigilei, Leonid V.

    "Creating computational models of biological systems to better combat dangerous pathogens and human of Biomedical Engineering University of Virginia Charlottesville, VA 434.924.8195 Computational Systems Biology system in biofuel and nutraceutical production. With the aid of computational techniques, we can predict

  7. Genomics and Systems Biology of Tuberculosis (2009 JGI User Meeting)

    ScienceCinema (OSTI)

    Galagan, James

    2011-04-25

    James Galagan from the Broad Institute spoke about the "Genomics and Systems Biology of TB" on March 26, 2009 during the 4th Annual User Meeting

  8. Preparing for Transfer Biological Engineering

    E-Print Network [OSTI]

    Walter, M.Todd

    Preparing for Transfer Majors: Biological Engineering Chemical Engineering Civil Engineering Computer Science Electrical & Computer Engineering Engineering Physics Environmental Engineering Information Science, Systems, & Technology Materials Science & Engineering Mechanical Engineering Operations

  9. Preparing for Transfer Biological Engineering

    E-Print Network [OSTI]

    Walter, M.Todd

    Preparing for Transfer Majors: Biological Engineering Biomedical Engineering* Chemical Engineering Civil Engineering Computer Science Electrical & Computer Engineering Engineering Physics Environmental Engineering Information Science, Systems, & Technology Materials Science & Engineering Mechanical Engineering

  10. Invasion Biology 1958-2004: The Pursuit of Science and Conservation Mark A. Davis

    E-Print Network [OSTI]

    Thomas, David D.

    within a larger social milieu of contentious environmental values and politics. No doubt for all in their writing. Some of the issues have attracted the interests of scholars outside the biological sciences

  11. Quantum integrable systems. Quantitative methods in biology

    E-Print Network [OSTI]

    Giovanni Feverati

    2011-01-19

    Quantum integrable systems have very strong mathematical properties that allow an exact description of their energetic spectrum. From the Bethe equations, I formulate the Baxter "T-Q" relation, that is the starting point of two complementary approaches based on nonlinear integral equations. The first one is known as thermodynamic Bethe ansatz, the second one as Kl\\"umper-Batchelor-Pearce-Destri- de Vega. I show the steps toward the derivation of the equations for some of the models concerned. I study the infrared and ultraviolet limits and discuss the numerical approach. Higher rank integrals of motion can be obtained, so gaining some control on the eigenvectors. After, I discuss the Hubbard model in relation to the N = 4 supersymmetric gauge theory. The Hubbard model describes hopping electrons on a lattice. In the second part, I present an evolutionary model based on Turing machines. The goal is to describe aspects of the real biological evolution, or Darwinism, by letting evolve populations of algorithms. Particularly, with this model one can study the mutual transformation of coding/non coding parts in a genome or the presence of an error threshold. The assembly of oligomeric proteins is an important phenomenon which interests the majority of proteins in a cell. I participated to the creation of the project "Gemini" which has for purpose the investigation of the structural data of the interfaces of such proteins. The objective is to differentiate the role of amino acids and determine the presence of patterns characterizing certain geometries.

  12. Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark

    E-Print Network [OSTI]

    Ussery, David W.

    Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark Burkholderia Pan-genomics Dave Ussery Max Planck Institut fur Terrestrial Microbiology Marburg, Germany 26 May, 2008 - or - What can we learn from more than 50 sequenced genomes? #12;Comparative Microbial Genomics

  13. Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark

    E-Print Network [OSTI]

    Ussery, David W.

    Comparative Microbial Genomics group CenterforBiologicalSequenceanalysisDepartmentofSystemsBiology,TechnicalUniversityofDenmark E. coli pangenomics - or - How to compare hundreds of E. coli genomes Fuzzy Dave Ussery Ullevĺl Universitetssykehus Oslo, Norway Wednesday, 10 December, 2008 #12;Comparative Microbial Genomics group Centerfor

  14. SCIENCE AT THE CROSSROADS Synthetic Biology: Life as App Store

    E-Print Network [OSTI]

    Newman, Stuart A.

    the formulation of a science of inheritance. Bronze and Iron Age metallurgy flourished without the atomic theory

  15. Micromechanics of engineered and biological systems G K ANANTHASURESH1

    E-Print Network [OSTI]

    Giri, Ranjit K.

    are microsystems (microelectromechanical systems ­ MEMS), microfluidic devices, and biological cells. Mechanics: microsystems (microelectromechanical systems ­ MEMS ­ as they are popularly known), microfluidics, and bio' rather than `MEMS' because the latter is restrictive as it only conveys mechanical and electrical aspects

  16. REU MENTORS & THEIR RESEARCH PROJECTS JONATHAN ARNOLD (Genetics) systems biology of the biological clock

    E-Print Network [OSTI]

    Arnold, Jonathan

    , innate defense mechanisms, and genome stability. djgarf@bmb.uga.edu TONY GLYNN (USDA) ­ Fungal genomics). Evolutionary systems biology, comparative genomics, protein structure, function and evolution. kannan & Institute of Bioinformatics) Microbial comparative genomics, prokaryotic genome composition, structure

  17. University of Maryland Center for Environmental Science Chesapeake Biological Laboratory

    E-Print Network [OSTI]

    Boynton, Walter R.

    , the Chesapeake Biological Laboratory has long been a national leader in fisheries, environmental chemistry. Beaven Hall Environmental Chemistry & Toxicology Understanding the fate of pollutants their work in two primary areas: aquatic toxicology and environmental organic chemistry. Aquatic

  18. Chemical Genetics: Elucidating Biological Systems with Small-Molecule Compounds

    E-Print Network [OSTI]

    Nghiem, Paul

    Chemical Genetics: Elucidating Biological Systems with Small-Molecule Compounds Masaoki Kawasumi1 and Paul Nghiem1,2 Chemical genetics employs diverse small-molecule compounds to elucidate biological chemical genetic approach, whereas the reverse approach involves small molecules targeting a single protein

  19. Optimal control for biological movement systems

    E-Print Network [OSTI]

    Li, Weiwei

    2006-01-01

    discrete time nonlinear dynamical system with state variablecontrol of nonlinear dynamical systems. We illustrated itsConsider the nonlinear dynamical system described by the

  20. Health Sciences Library System University of Pittsburgh

    E-Print Network [OSTI]

    Benos, Takis

    libraries. Environment and Assessment Significant trends in HSLS development during the past 10 yearsHealth Sciences Library System University of Pittsburgh Long Range Plan ­ Executive Summary 2005/06 ­ 2009/10 Mission and Overview The Health Sciences Library System (HSLS) supports the educational

  1. Energy and Environmental Sciences Directorate

    E-Print Network [OSTI]

    , Director Energy and Transportation Science Division Johney Green, Director Environmental Sciences Division1 4/2/2015 Energy and Environmental Sciences Directorate *Dual-administered with Computing Pierce Climate Change Research Jay Gulledge Biological Systems Science Tony Palumbo Energy Programs

  2. November 2004 / Vol. 54 No. 11 BioScience 991 Atidal wave in the biological sciences, caused by

    E-Print Network [OSTI]

    Liu, Zhongchi

    , caused by the advent of genomic techniques and data, has begun to sweep across the fields of evolutionary of genome biology,or genomics, surged in the late 1980s under the impetus of the Human Genome Project and functional questions. The National Plant Genome Initiative, which brought genomics to the plant sciences

  3. Renewable Energy from Synthetic Biology (LBNL Science at the Theater)

    ScienceCinema (OSTI)

    Keasling, Jay

    2011-04-28

    Jay Keasling, co-leader of Berkeley Lab's Helios Project, is a groundbreaking researcher in the new scientific field of synthetic biology. In Helios, he directs the biology program, incorporating a range of approaches to increasing the efficacy and economy of plants and cellulose-degrading microbes to make solar-based fuels. He is a UC Berkeley professor of Chemical and Bioengineering, and founder of Amyris Biotechnologies, a company that was honored as a Technology Pioneer for 2006 by the World Economic Forum. Keasling has succeeded in using synthetic biology to develop a yeast-based production scheme for precursors of the antimalarial drug artemisinin in work funded by the Bill & Melinda Gates Foundation.

  4. The common ground of genomics and systems biology

    E-Print Network [OSTI]

    Conesa, Ana; Mortazavi, Ali

    2014-01-01

    8/S2. Authors’ details Genomics of Gene Expression Lab,systems biology. Annu Rev. Genomics Hum. Genet 2001, 2:343-projection strategies. Genomics 2008, 92(6):373-83. 31.

  5. BE568: Computational Systems Biology of Human SPRING 2014

    E-Print Network [OSTI]

    Vajda, Sandor

    , proteomic analysis, next-generation sequencing, machine learning, #12;elementary genetics relevant to disease mechanisms, systems biology of disease, diagnosis, prognosis, personalized medicine or network based drug design. The course also aims to teach

  6. The OME Framework for genome-scale systems biology

    SciTech Connect (OSTI)

    Palsson, Bernhard O.; Ebrahim, Ali; Federowicz, Steve

    2014-12-19

    The life sciences are undergoing continuous and accelerating integration with computational and engineering sciences. The biology that many in the field have been trained on may be hardly recognizable in ten to twenty years. One of the major drivers for this transformation is the blistering pace of advancements in DNA sequencing and synthesis. These advances have resulted in unprecedented amounts of new data, information, and knowledge. Many software tools have been developed to deal with aspects of this transformation and each is sorely needed [1-3]. However, few of these tools have been forced to deal with the full complexity of genome-scale models along with high throughput genome- scale data. This particular situation represents a unique challenge, as it is simultaneously necessary to deal with the vast breadth of genome-scale models and the dizzying depth of high-throughput datasets. It has been observed time and again that as the pace of data generation continues to accelerate, the pace of analysis significantly lags behind [4]. It is also evident that, given the plethora of databases and software efforts [5-12], it is still a significant challenge to work with genome-scale metabolic models, let alone next-generation whole cell models [13-15]. We work at the forefront of model creation and systems scale data generation [16-18]. The OME Framework was borne out of a practical need to enable genome-scale modeling and data analysis under a unified framework to drive the next generation of genome-scale biological models. Here we present the OME Framework. It exists as a set of Python classes. However, we want to emphasize the importance of the underlying design as an addition to the discussions on specifications of a digital cell. A great deal of work and valuable progress has been made by a number of communities [13, 19-24] towards interchange formats and implementations designed to achieve similar goals. While many software tools exist for handling genome-scale metabolic models or for genome-scale data analysis, no implementations exist that explicitly handle data and models concurrently. The OME Framework structures data in a connected loop with models and the components those models are composed of. This results in the first full, practical implementation of a framework that can enable genome-scale design-build-test. Over the coming years many more software packages will be developed and tools will necessarily change. However, we hope that the underlying designs shared here can help to inform the design of future software.

  7. Master of Science in Earth, Environmental, and Physical Sciences Planet Earth consists of interacting systems -the

    E-Print Network [OSTI]

    , physics, and environmental science, and supporting fields such as biology and chemistry. The EEPS programMaster of Science in Earth, Environmental, and Physical Sciences Planet Earth consists activities. The Masters program in Earth, Environmental, and Physical Sciences (EEPS) at Wichita State

  8. Agricultural and Biological Engineering College of Agricultural Sciences Cooperative Extension

    E-Print Network [OSTI]

    Lee, Dongwon

    solar energy or "green sunshine" derived from the solar- powered photosynthesis process during the growth and development phases of plant materials. Utilizing Biomass Energy The four methods in which, and Pennsylvania Counties Cooperating Biomass Energy Dennis E. Buffington, Professor, Agricultural and Biological

  9. College of Agricultural Sciences Agricultural and Biological Engineering

    E-Print Network [OSTI]

    Lee, Dongwon

    and Biological Engineering I n 2004, the United States used an average of 20 mil- lion barrels of oil per day decades. Today, the U.S. imports 60% of all the oil that is used for our domestic consumption, whereas as recently as 35 years ago, the U.S. imported just 30%. Our dependency on imported oil is a significant

  10. Computational Proteomics: High-throughput Analysis for Systems Biology

    SciTech Connect (OSTI)

    Cannon, William R.; Webb-Robertson, Bobbie-Jo M.

    2007-01-03

    High-throughput (HTP) proteomics is a rapidly developing field that offers the global profiling of proteins from a biological system. The HTP technological advances are fueling a revolution in biology, enabling analyses at the scales of entire systems (e.g., whole cells, tumors, or environmental communities). However, simply identifying the proteins in a cell is insufficient for understanding the underlying complexity and operating mechanisms of the overall system. Systems level investigations are relying more and more on computational analyses, especially in the field of proteomics generating large-scale global data.

  11. Supporting Advanced Scientific Computing Research Basic Energy Sciences Biological

    E-Print Network [OSTI]

    and Environmental Research · Fusion Energy Sciences · High Energy Physics · Nuclear Physics IPv6 SNMP Network will become consistent and routine IPv6 SNMP Network Management Goals #12;2/2/10 ·ESnet has a long history - Polling of SNMP MIBs - Handling of asynchronous trap based alerts - GUI input & output Enablers ESnet has

  12. Systems Biology Knowledgebase (GSC8 Meeting)

    ScienceCinema (OSTI)

    Cottingham, Robert W [ORNL

    2011-04-29

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Robert W. Cottingham of Oak Ridge National Laboratory discusses the DOE KnowledgeBase at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

  13. Climate, Earth system project draws on science powerhouses

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Climate, Earth system project draws on science powerhouses Climate, Earth system project draws on science powerhouses The project will focus initially on three climate-change...

  14. Systems Biology Approaches and Applications in Obesity, Diabetes, and Cardiovascular Diseases

    E-Print Network [OSTI]

    Meng, Q; Mäkinen, VP; Luk, H; Yang, X

    2013-01-01

    studies and systems biology: together at last. Trends Genet:pro- teomics and network biology. Annu Rev Biochem. 2012;81:genomics- and network- driven systems biology approaches for

  15. THESIS APPROVAL The abstract and thesis of Katherine Ona for the Master of Science in Biology were

    E-Print Network [OSTI]

    Courcelle, Justin

    THESIS APPROVAL The abstract and thesis of Katherine Ona for the Master of Science in Biology were presented October 31, 2008, and accepted by the thesis committee and the department. COMMITTEE APPROVALS Department of Biology #12;ABSTRACT An abstract of the thesis of Katherine Ona for the Master of Science

  16. Biology Chemistry & Material Science Laboratory 1 | Sample Preparation

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAudits & InspectionsBeryllium andSamplerBiological Imaging

  17. Biology Chemistry & Material Science Laboratory 2 | Sample Preparation

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAudits & InspectionsBeryllium andSamplerBiological ImagingLaboratories

  18. The Climate for Faculty of Color in the Biological & Physical Sciences at UW-

    E-Print Network [OSTI]

    Sheridan, Jennifer

    #12;The Climate for Faculty of Color in the Biological & Physical Sciences at UW- Madison Jennifer Sheridan WISELI University of Wisconsin-Madison #12;Climate The atmosphere or ambience of an organization as perceived by its members. An organization's climate is reflected in its structures, policies, and practices

  19. On the complete determination of biological systems

    E-Print Network [OSTI]

    Church, George M.

    projects to create computational models that are, in some sense, complete. However, the details of what that contribute to the engineering, reverse-engineering or modification of a system). The defining feature advances in medicine, biotechnology and basic research. Moreover, systems level descriptions promise

  20. ysteresis is a nonlinear effect that arises in diverse disciplines ranging from physics to biology, from material science to mechanics, and from electronics

    E-Print Network [OSTI]

    Tan, Xiaobo

    ]. By the 1920s, researchers in plasticity and soil mechanics had discovered the hysteresis phenomenon as well to biology, from material science to mechanics, and from electronics to economics. While ferromagnetism offers a classical example, hysteresis also appears in mechanical systems (in the form of backlash

  1. Physical, Chemical & Biological Processes of the Environment A Systems Approach to Solving Environmental Problems

    E-Print Network [OSTI]

    drilling for oil in the Great Lakes or Is fracking an environmental risk? 16 3 Biological sciences, pathogens, road salt or lead in drinking water. 22 17 Physical sciences: Water cycle and hydrology. 23 19

  2. Structural Biology | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power AdministrationRobust,Field-effectWorkingLosThe 26thIWalter H.4Office of Science (SC)EPSCoR Home »

  3. Biological optimization systems for enhancing photosynthetic efficiency and methods of use

    DOE Patents [OSTI]

    Hunt, Ryan W; Chinnasamy, Senthil; Das, Keshav C; Rolim de Mattos, Erico

    2014-02-25

    The present disclosure relates to biological optimization systems for enhancing photosynthetic efficiency and methods of use.

  4. Fungal Genomics Program Grigoriev, Igor 59 BASIC BIOLOGICAL SCIENCES...

    Office of Scientific and Technical Information (OSTI)

    and the environment, and to promote functional studies on a system level. Combining new sequencing technologies and comparative genomics tools, JGI is now leading the world...

  5. Final report for Conference Support Grant "From Computational Biophysics to Systems Biology - CBSB12"

    SciTech Connect (OSTI)

    Hansmann, Ulrich H.E.

    2012-07-02

    This report summarizes the outcome of the international workshop �From Computational Biophysics to Systems Biology (CBSB12)� which was held June 3-5, 2012, at the University of Tennessee Conference Center in Knoxville, TN, and supported by DOE through the Conference Support Grant 120174. The purpose of CBSB12 was to provide a forum for the interaction between a data-mining interested systems biology community and a simulation and first-principle oriented computational biophysics/biochemistry community. CBSB12 was the sixth in a series of workshops of the same name organized in recent years, and the second that has been held in the USA. As in previous years, it gave researchers from physics, biology, and computer science an opportunity to acquaint each other with current trends in computational biophysics and systems biology, to explore venues of cooperation, and to establish together a detailed understanding of cells at a molecular level. The conference grant of $10,000 was used to cover registration fees and provide travel fellowships to selected students and postdoctoral scientists. By educating graduate students and providing a forum for young scientists to perform research into the working of cells at a molecular level, the workshop adds to DOE's mission of paving the way to exploit the abilities of living systems to capture, store and utilize energy.

  6. Application of Modern Filtering Techniques for 3D Localisation in Biological and Robotic Systems

    E-Print Network [OSTI]

    Application of Modern Filtering Techniques for 3D Localisation in Biological and Robotic Systems Application of Modern Filtering Techniques for 3D Localisation in Biological and Robotic Systems Kudah C system . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 2.2 Robotic system

  7. Enhancing Biological Science Research Opportunities at Primarily Undergraduate Institutions (PUIs)

    E-Print Network [OSTI]

    Campbell, A. Malcolm

    , July 28, 2012 #12;#1 Lesson Learned: logistics · double purpose teaching and research · get paid to do system · avoid maintenance costs/time · research groups > 4 take less effort than

  8. Environmental Noise and Nonlinear Relaxation in Biological Systems

    E-Print Network [OSTI]

    B. Spagnolo; D. Valenti; S. Spezia; L. Curcio; N. Pizzolato; A. A. Dubkov; A. Fiasconaro; D. Persano Adorno; P. Lo Bue; E. Peri; S. Colazza

    2011-12-17

    We analyse the effects of environmental noise in three different biological systems: (i) mating behaviour of individuals of \\emph{Nezara viridula} (L.) (Heteroptera Pentatomidae); (ii) polymer translocation in crowded solution; (iii) an ecosystem described by a Verhulst model with a multiplicative L\\'{e}vy noise.

  9. ENGINEERING GRaduatE PRoGRams Biological SyStemS engineering Biomedical engineering chemical engineering civil and environmental engineering

    E-Print Network [OSTI]

    California at Davis, University of

    ENGINEERING GRaduatE PRoGRams Biological SyStemS engineering § Biomedical engineering § chemical engineering § civil and environmental engineering computer Science § electrical and computer engineering § materialS Science and engineering mechanical and aeronautical engineering § tranSportation technology

  10. Molecular biology in marine science: Scientific questions, technological approaches, and practical implications

    SciTech Connect (OSTI)

    1994-12-31

    This report describes molecular techniques that could be invaluable in addressing process-oriented problems in the ocean sciences that have perplexed oceanographers for decades, such as understanding the basis for biogeochemical processes, recruitment processes, upper-ocean dynamics, biological impacts of global warming, and ecological impacts of human activities. The coupling of highly sophisticated methods, such as satellite remote sensing, which permits synoptic monitoring of chemical, physical, and biological parameters over large areas, with the power of modern molecular tools for ``ground truthing`` at small scales could allow scientists to address questions about marine organisms and the ocean in which they live that could not be answered previously. Clearly, the marine sciences are on the threshold of an exciting new frontier of scientific discovery and economic opportunity.

  11. Booly : a new data integration platform for systems biology

    E-Print Network [OSTI]

    Do, Long Hoang

    2010-01-01

    for enabling conceptual biology. Bioinformatics 2005, 21for data integration in biology. Trends Biotechnol 1999, 17(the unification of biology. The Gene Ontology Consortium.

  12. Biochemistry and Molecular Biology -Bachelor of Science (SMBCUG) Total Credits Required: 128 Major Requirements -62 credits Concentration Requirements -29 credits

    E-Print Network [OSTI]

    Biochemistry and Molecular Biology - Bachelor of Science (SMBCUG) Total Credits Required: 128 Major University Chemistry II AND 3 CH4995 Undergraduate Research in Biochemistry OR 6 CH1161 University Chemistry

  13. Art and Science for Life: Designing and Growing Virtual Plants with L-systems

    E-Print Network [OSTI]

    Prusinkiewicz, Przemyslaw

    Art and Science for Life: Designing and Growing Virtual Plants with L-systems Przemyslaw@cpsc.ucalgary.ca Abstract Virtual plants are computer models that recreate the structure and simulate the development of plants. Virtual plant modeling is an interdisciplinary area combining mathematical formalisms, biological

  14. Roadmap: Digital Sciences Digital Systems Analysis Bachelor of Science [DS-BS-DS-DSA

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Digital Sciences ­ Digital Systems Analysis ­ Bachelor of Science [DS-BS-DS-DSA] School of Digital Sciences Catalog Year: 2012-2013 Page 1 of 3 | Last Updated: 16-Apr-12/LNHD This roadmap (lower or upper division) 6 #12;Roadmap: Digital Sciences ­ Digital Systems Analysis ­ Bachelor

  15. Biological Sciences

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail.Theory of raregovAboutRecovery ActTools toBadging, BadgeBecomingReactions Probing

  16. Strawberry DNA Extraction 2009 1 Minority Science Programs School of Biological Sciences University of California, Irvine

    E-Print Network [OSTI]

    Rose, Michael R.

    · Frozen strawberries, thawed overnight · 20 mL DNA extraction buffer (water, salt, and soap) in bag · IceStrawberry DNA Extraction 2009 1 Minority Science Programs ­ School regular household chemicals to extract DNA from strawberries and other fruits. Each chemical has

  17. Efficient Bayesian estimates for discrimination among topologically different systems biology models

    E-Print Network [OSTI]

    Hagen, David Robert

    A major effort in systems biology is the development of mathematical models that describe complex biological systems at multiple scales and levels of abstraction. Determining the topology—the set of interactions—of a ...

  18. Systems Engineering Integrating Project Management, Science, Engineering, and

    E-Print Network [OSTI]

    Mojzsis, Stephen J.

    Systems Engineering Integrating Project Management, Science, Engineering, and Mission Operations Systems Engineering Experience LASP is a full-cycle space research institute, combining all aspects of space exploration through our expertise in science, engineering, mission operations, data analysis

  19. Roadmap: Applied Engineering Manufacturing Systems Bachelor of Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Applied Engineering ­ Manufacturing Systems ­ Bachelor of Science [AT 15000 Introduction to Human Communication 3 Fulfills Kent Core Additional Kent Core Requirement 3 See #12;Roadmap: Applied Engineering ­ Manufacturing Systems ­ Bachelor of Science [AT

  20. Systems Engineering Integrating Project Management, Science, Engineering, and

    E-Print Network [OSTI]

    Mojzsis, Stephen J.

    Systems Engineering Integrating Project Management, Science, Engineering, and Mission Operations Systems Engineering Experience LASP is a full-cycle space institute, combining all aspects of space exploration through our expertise in science, engineering, mission operations, data analysis, and education

  1. Frontiers of Plant Cell Biology: Signals and Pathways, System-Based Approaches 22nd Symposium in Plant Biology (University of California-Riverside)

    SciTech Connect (OSTI)

    Minorsky, Peter V.

    2003-06-01

    The symposium ''Frontiers of Plant Cell Biology: Signals and Pathways, Systems-Based Approaches'' was held January 15-18, 2003 at the Riverside Convention Center in Riverside, California. The host organization for the symposium was the Center for Plant Cell Biology (CEPCEB) at the University of California, Riverside (UCR). The meeting, focusing on systems-based approaches to plant cell biology research, was the first of this kind in the field of plant biology. The speakers and nearly 100 posters placed emphasis on recent developments in plant cellular biology and molecular genetics, particularly those employing emerging genomic tools, thereby sharing the most current knowledge in the field and stimulating future advances. In attendance were many well-established scientists and young investigators who approach plant cell biology from different but complementary conceptual and technical perspectives. Indeed, many disciplines are converging in the field of cell biology, producing synergies that will enable plant scientists to determine the function of gene products in the context of living cells in whole organisms. New, cross-disciplinary collaborations, as well as the involvement of computer scientists and chemists in plant biology research, are likely additional outcomes of the symposium. The program included 39 invited session speakers and workshop/panel speakers. Sessions were convened on the following themes: Cell-Cell Communication; Protein Trafficking; Cell Surface, Extracellular Matrix and Cell Wall; Signal Transduction; Signal Transduction and Proteosome; and Systems-Based Approaches to Plant Cell Biology. Workshops on Chemical Genetics and Visual Microscopy were also presented. Abstracts from each of the speaker presentations, as well as the posters presented at the meeting were published in a program booklet given to the 239 faculty members, researchers, postdoctoral scientists and graduate students in attendance. The booklet thus serves as a reference for symposium attendees to locate additional information about a topic of their particular interest and to contact other investigators. In addition, an article reviewing the symposium by science writer Peter V. Minorsky appeared in the June 2003 issue of Plant Physiology, a special issue devoted to systems-based approaches in the study of the model plant Arabidopsis (article submitted as part of this Final Technical Report).

  2. Biological Micro-Electrical Mechanical Systems Micro-electrical mechanical systems (MEMS) created new

    E-Print Network [OSTI]

    Hill, Wendell T.

    Biological Micro-Electrical Mechanical Systems (bioMEMS) Micro-electrical mechanical systems (MEMS beginning to be explored. bioMEMS combine the potential of cell-sized systems with the advantages in cutting edge research in bioMEMS to revolutionize mechanized drug discovery processes, non- invasive

  3. In vivo robotics: the automation of neuroscience and other intact-system biological fields

    E-Print Network [OSTI]

    Forest, Craig R.

    Robotic and automation technologies have played a huge role in in vitro biological science, having proved critical for scientific endeavors such as genome sequencing and high-throughput screening. Robotic and automation ...

  4. Data Management for Earth System Science Institute for Computational Earth System Science

    E-Print Network [OSTI]

    Dozier, Jeff

    imaging sensors on Earth-orbiting satellites, we find they have already populated several multi- terabyte- age on a daily or weekly basis. The advent of the advanced sensors on the Earth Observing System (EOS by some complex and incomplete encoding of semantic metadata into a file name. Most Earth system science c

  5. Research Positions in Big Data Computational Biology Department of Computational and Systems Biology

    E-Print Network [OSTI]

    Benos, Takis

    Research Positions in Big Data Computational Biology Department of Computational and clinical data related to melanoma and chronic lung diseases. The ideal, and will have research experience in computational biology. 2. One Data Scientist

  6. Accelerating Science Driven System Design With RAMP

    SciTech Connect (OSTI)

    Wawrzynek, John

    2015-05-01

    Researchers from UC Berkeley, in collaboration with the Lawrence Berkeley National Lab, are engaged in developing an Infrastructure for Synthesis with Integrated Simulation (ISIS). The ISIS Project was a cooperative effort for “application-driven hardware design” that engages application scientists in the early parts of the hardware design process for future generation supercomputing systems. This project served to foster development of computing systems that are better tuned to the application requirements of demanding scientific applications and result in more cost-effective and efficient HPC system designs. In order to overcome long conventional design-cycle times, we leveraged reconfigurable devices to aid in the design of high-efficiency systems, including conventional multi- and many-core systems. The resulting system emulation/prototyping environment, in conjunction with the appropriate intermediate abstractions, provided both a convenient user programming experience and retained flexibility, and thus efficiency, of a reconfigurable platform. We initially targeted the Berkeley RAMP system (Research Accelerator for Multiple Processors) as that hardware emulation environment to facilitate and ultimately accelerate the iterative process of science-driven system design. Our goal was to develop and demonstrate a design methodology for domain-optimized computer system architectures. The tangible outcome is a methodology and tools for rapid prototyping and design-space exploration, leading to highly optimized and efficient HPC systems.

  7. A Universal Automated Information System for Science and Technology

    E-Print Network [OSTI]

    Andrews, Peter B.

    A Universal Automated Information System for Science and Technology Peter B. Andrews Carnegie of mathematics, science, applied sci- ence, and technology. Just as those searching for information on the web of a Universal Automated Information System for Science and Technology having at least the following features

  8. Tools and reference standards supporting the engineering and evolution of synthetic biological systems

    E-Print Network [OSTI]

    Kelly, Jason R. (Jason Robert)

    2008-01-01

    Biological engineers have constructed a number of multi-part synthetic biological systems that conduct logical operations on input signals, produce oscillatory output signals, store memory, or produce desired products. ...

  9. Genomic Sciences | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    to clean energy and environmental applications. Multidisciplinary genomic science research and communication resources at ORNL include the following: Plant Systems Biology...

  10. The Biology of . . . Batteries -news education science magazines tech... http://www.discover.com/issues/jan-04/departments/biology-of-batteries/ 1 of 2 11/14/2005 2:45 PM

    E-Print Network [OSTI]

    Lovley, Derek

    The Biology of . . . Batteries - news education science magazines tech... http://www.discover.com/issues/jan-04/departments/biology-of-batteries/ 1 of 2 11/14/2005 2:45 PM Photograph by Grant Delin SiteEntire Site Discover Magazine > Issues > jan-04 > departments > The Biology of . . . Batteries

  11. Computational and Systems Biology DOI: 10.1039/b921381n

    E-Print Network [OSTI]

    Babu, M. Madan

    Computational and Systems Biology DOI: 10.1039/b921381n Over the last few decades, we have all in this themed issue of Molecular BioSystems entitled ``Computational and Systems Biology''. The excitement contains papers that use contemporary computational and systems approaches that involve analysis

  12. Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room News PublicationsAudits & InspectionsBeryllium andSamplerBiological Imaging byU.S.

  13. March 2014 Most Viewed Documents for Biology And Medicine | OSTI...

    Office of Scientific and Technical Information (OSTI)

    4 Most Viewed Documents for Biology And Medicine Science Subject Feed Carbon Dioxide Sequestering Using Microalgal Systems Daniel J. Stepan; Richard E. Shockey; Thomas A. Moe; Ryan...

  14. July 2013 Most Viewed Documents for Biology And Medicine | OSTI...

    Office of Scientific and Technical Information (OSTI)

    July 2013 Most Viewed Documents for Biology And Medicine Science Subject Feed Carbon Dioxide Sequestering Using Microalgal Systems Daniel J. Stepan; Richard E. Shockey; Thomas A....

  15. Intoduction to Complex Systems A new course for students in the Physical Sciences, Computer Sciences, and

    E-Print Network [OSTI]

    Buldyrev, Sergey

    Intoduction to Complex Systems A new course for students in the Physical Sciences, Computer to understand the behavior of real systems. In both steps we will extensively use computers. Homework assignment Sciences, and Mathematics, by Professor Sergey Buldyrev. The definition of a complex system is somewhat

  16. BSc Biology Major: Sample Program CEGEP students with a Science DEC will begin their program in Y2. Any missing science prerequisites (full year

    E-Print Network [OSTI]

    students, but you might take it in your fourth year (and take an elective in your third year). That said Option 2 Free Elective 7 Free Elective 7 Free Elective 8 Free Elective 8 Honours: In the fourth year, add. Any missing science prerequisites (full year physics, chemistry, calculus, and half-year biology

  17. Between Service Science and Service-Oriented Software Systems Faculty of Computer Science

    E-Print Network [OSTI]

    Yan, Yuhong

    1 Between Service Science and Service-Oriented Software Systems Yuhong Yan Faculty of Computer. Introduction Service Science is promoted by many leading IT companies, such as IBM and SAP. These companies Science University of New Brunswick Canada Yuhong.yan@unb.ca Juergen Bode International School

  18. Citizen Science System Assemblages: Understanding the Technologies that Support Crowdsourced Science

    E-Print Network [OSTI]

    Crowston, Kevin

    Citizen Science System Assemblages: Understanding the Technologies that Support Crowdsourced@syr.edu ABSTRACT We explore the nature of technologies to support citizen science, a method of inquiry citizen science platforms may be comprised of widely varying functionalities, yet still support relatively

  19. Solar System Advisory Panel (SSAP) Developing the Roadmap for Solar System Science

    E-Print Network [OSTI]

    Crowther, Paul

    Solar System Advisory Panel (SSAP) Developing the Roadmap for Solar System Science Note a science vision for the coming years. The science vision will be accompanied by a Roadmap, setting out of the opportunities to support its science in the coming years are known to it. As the Roadmap will extend for 10

  20. Rutgers Applied Probability Conference Department of Management Science & Information Systems

    E-Print Network [OSTI]

    2nd Rutgers Applied Probability Conference Department of Management Science & Information Systems and the Management Sciences, New Jersey Chapter Stochastic Methods in Information Technology December 6 in memory of Research and the Management Sciences, New Jersey Chapter Stochastic Methods in Information Technology Ben

  1. Roadmap: Systems/Industrial Engineering Technology Associate of Applied Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Systems/Industrial Engineering Technology ­ Associate of Applied Science [RE Kent Core Summary below Semester Four: [17 Credit Hours] MERT 22009 Robotics and Flexible Automation 3

  2. New Opportunities for Outer Solar System Science using Radioisotope

    Office of Scientific and Technical Information (OSTI)

    Opportunities for Outer Solar System Science using Radioisotope Electric Propulsion Noble, Robert J.; SLAC; Amini, Rashied; Beauchamp, Patricia M.; Caltech, JPL; Bennett, Gary...

  3. New Opportunities for Outer Solar System Science using Radioisotope...

    Office of Scientific and Technical Information (OSTI)

    Technical Report: New Opportunities for Outer Solar System Science using Radioisotope Electric Propulsion Citation Details In-Document Search Title: New Opportunities for Outer...

  4. Biologically-based signal processing system applied to noise removal for signal extraction

    DOE Patents [OSTI]

    Fu, Chi Yung; Petrich, Loren I.

    2004-07-13

    The method and system described herein use a biologically-based signal processing system for noise removal for signal extraction. A wavelet transform may be used in conjunction with a neural network to imitate a biological system. The neural network may be trained using ideal data derived from physical principles or noiseless signals to determine to remove noise from the signal.

  5. Colouring Space -A Coloured Framework for Spatial Modelling in Systems Biology

    E-Print Network [OSTI]

    Gilbert, David

    , hy- brid Petri nets, spatial modelling, biomolecular networks, Systems Biology, BioModel Engineering- tributes of dynamic systems using coloured Petri nets and show how it can be applied to biological systems for the uncoloured family of Petri net classes. Keywords: Coloured Petri nets, qualitative, stochastic, continuous

  6. Parameter Discovery for Stochastic Computational Models in Systems Biology Using Bayesian Model

    E-Print Network [OSTI]

    Parameter Discovery for Stochastic Computational Models in Systems Biology Using Bayesian Model--Parameterized probabilistic complex computational (P2 C2 ) models are increasingly used in computational systems biology to study biochemical and physiological systems. A key challenge is to build mechanistic P2 C2 models

  7. SCIENCE, POLICY & ETHICS MINOR Faculty: Phil Ammirato (Biology), Randall Balmer (Religion), Diane Dittrick (EnvSci), Tim

    E-Print Network [OSTI]

    Halpin-Healy, Tim

    Dittrick (EnvSci), Tim Halpin-Healy (Physics), Peter Juviler (Politics/Human Rights), Brian Morton (Biology), Sonia Pereira (Economics) Richard Pious (Politics), Rajiv Sethi (Economics) As part of the College programs & race science, the Manhattan Project, as well as the Cold War build-up of nuclear arsenals

  8. R. Giegerich et al. (eds.) Computer Science and Biology. GCB'99 Hannover, Germany. Univ. Bielefeld 1999, pp. 107112

    E-Print Network [OSTI]

    Stadler, Peter F.

    R. Giegerich et al. (eds.) Computer Science and Biology. GCB'99 Hannover, Germany. Univ. Bielefeld of its free energy, W (x, #). If this energy function W were known, the native fold could in principle be predicted from the amino acid sequence by energy mini­ mization in conformation space. Although the energy

  9. Synthetic Biology and the U.S. Biotechnology Regulatory System: Challenges and Options

    SciTech Connect (OSTI)

    Carter, Sarah R.; Rodemeyer, Michael; Garfinkel, Michele S.; Friedman, Robert M

    2014-05-01

    Synthetic Biology and the U.S. Biotechnology Regulatory System: Challenges and Options Sarah R. Carter, Ph.D., J. Craig Venter Institute; Michael Rodemeyer, J.D., University of Virginia; Michele S. Garfinkel, Ph.D., EMBO; Robert M. Friedman, Ph.D., J. Craig Venter Institute In recent years, a range of genetic engineering techniques referred to as “synthetic biology” has significantly expanded the tool kit available to scientists and engineers, providing them with far greater capabilities to engineer organisms than previous techniques allowed. The field of synthetic biology includes the relatively new ability to synthesize long pieces of DNA from chemicals, as well as improved methods for genetic manipulation and design of genetic pathways to achieve more precise control of biological systems. These advances will help usher in a new generation of genetically engineered microbes, plants, and animals. The JCVI Policy Center team, along with researchers at the University of Virginia and EMBO, examined how well the current U.S. regulatory system for genetically engineered products will handle the near-term introduction of organisms engineered using synthetic biology. In particular, the focus was on those organisms intended to be used or grown directly in the environment, outside of a contained facility. The study concludes that the U.S. regulatory agencies have adequate legal authority to address most, but not all, potential environmental, health and safety concerns posed by these organisms. Such near-term products are likely to represent incremental changes rather than a marked departure from previous genetically engineered organisms. However, the study also identified two key challenges for the regulatory system, which are detailed in the report. First, USDA’s authority over genetically engineered plants depends on the use of an older engineering technique that is no longer necessary for many applications. The shift to synthetic biology and other newer genetic engineering techniques will leave many engineered plants without any pre-market regulatory review. Second, the number and diversity of engineered microbes for commercial use will increase in the near future, challenging EPA’s resources, expertise, and perhaps authority to regulate them. For each of these challenges, the report sets out a series of options, including an analysis of the advantages and disadvantages of each option from a variety of perspectives, for policy makers to consider. Policy responses will depend on the trade-offs chosen among competing considerations. This report, funded by the Department of Energy with additional funds from the Alfred P. Sloan Foundation, is the result of a two-year process that included interviews, commissioned background papers, discussions, and two workshops that sought input from a wide range of experts, including U.S. federal agency regulators, legal and science policy experts, representatives from the biotechnology indus¬try, and non-governmental organiza¬tions. This cross-section of views informed this report, but the conclusions are solely those of the authors. An Executive Summary, full Report, and background papers are available at: http://www.jcvi.org/cms/research/projects/synthetic-biology-and-the-us-biotechnology-regulatory-system/overview/

  10. DEPARTMENT OF BIOLOGY AND MARINE BIOLOGY

    E-Print Network [OSTI]

    Olszewski Jr., Edward A.

    DEPARTMENT OF BIOLOGY AND MARINE BIOLOGY GRADUATE PROGRAM REVIEW 2000-2007 #12;i TABLE OF CONTENTS ....................................................................... 389 #12;ii EXECUTIVE SUMMARY The Department of Biology and Marine Biology contributes importantly). The department began offering the Master of Science in Marine Biology in 1980, and the Master of Science

  11. Office of Biological and Environmental Research

    E-Print Network [OSTI]

    levels) ·Research Programs - Climate and Earth System Modeling (~$78) - Atmospheric Systems Research-scale, long-term field studies Process modeling with ties to earth- system models Funding to universities Sciences Fusion Energy Sciences Advanced Scientific Computing Research Nuclear Physics Biological Systems

  12. A Universal Automated Information System for Science and Technology

    E-Print Network [OSTI]

    Andrews, Peter B.

    A Universal Automated Information System for Science and Technology Peter B. Andrews Carnegie, applied sci- ence, and technology. Just as those searching for information on the web today tend to regard are likely to think of them as comprising a Universal Automated Information System for Science and Technology

  13. ENVIRONMENTAL EARTH SYSTEM SCIENCE (EESS) REQUIREMENTS FOR MAJORS CREDITS

    E-Print Network [OSTI]

    Wolberg, George

    ENVIRONMENTAL EARTH SYSTEM SCIENCE (EESS) REQUIREMENTS FOR MAJORS CREDITS English and Liberal Arts EAS 31001: Environmental Science Seminar 1-2 EAS 33000: Geographic Information Systems 3 EAS 47200: Environmental Project EESS Design 5 CHEM 33000: Physical Chemistry I 3 Total Major Requirements 19-20 Technical

  14. Department of Environmental Systems Science Practical Advisory Service

    E-Print Network [OSTI]

    Fischlin, Andreas

    .......................................... 4. Ability to work out a system model for a problemDepartment of Environmental Systems Science Practical Advisory Service 13.04.2015 Compulsory work (lecturer or perhaps the practical advisor)? Yes ........................................... 1

  15. Exciting careers blending engineering, science, and ecology

    E-Print Network [OSTI]

    Tullos, Desiree

    Exciting careers blending engineering, science, and ecology New Opportunities Making the world incorporate a broad range of biological systems as components, and emphasize mutual improvement of both human

  16. Amino : a domestic system for synthetic biology and continuous culturing

    E-Print Network [OSTI]

    Legault, Julie, S.M. Massachusetts Institute of Technology

    2015-01-01

    With the ability to transfer a trait from one creature to another purposefully, synthetic biology is advancing across unforeseen domains. From algae cells that convert carbon dioxide to fuel, biocementation bacteria to ...

  17. The Need for Biological Computation System Models | GE Global...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    2012.10.09 Hello everyone, I'm Maria Zavodszky and I work in the Computational Biology and Biostatistics Lab at GE Global Research in Niskayuna, New York. This being our...

  18. Enabling a Systems Biology Knowledgebase with Gaggle and Firegoose

    SciTech Connect (OSTI)

    Baliga, Nitin S.

    2014-12-12

    The overall goal of this project was to extend the existing Gaggle and Firegoose systems to develop an open-source technology that runs over the web and links desktop applications with many databases and software applications. This technology would enable researchers to incorporate workflows for data analysis that can be executed from this interface to other online applications. The four specific aims were to (1) provide one-click mapping of genes, proteins, and complexes across databases and species; (2) enable multiple simultaneous workflows; (3) expand sophisticated data analysis for online resources; and enhance open-source development of the Gaggle-Firegoose infrastructure. Gaggle is an open-source Java software system that integrates existing bioinformatics programs and data sources into a user-friendly, extensible environment to allow interactive exploration, visualization, and analysis of systems biology data. Firegoose is an extension to the Mozilla Firefox web browser that enables data transfer between websites and desktop tools including Gaggle. In the last phase of this funding period, we have made substantial progress on development and application of the Gaggle integration framework. We implemented the workspace to the Network Portal. Users can capture data from Firegoose and save them to the workspace. Users can create workflows to start multiple software components programmatically and pass data between them. Results of analysis can be saved to the cloud so that they can be easily restored on any machine. We also developed the Gaggle Chrome Goose, a plugin for the Google Chrome browser in tandem with an opencpu server in the Amazon EC2 cloud. This allows users to interactively perform data analysis on a single web page using the R packages deployed on the opencpu server. The cloud-based framework facilitates collaboration between researchers from multiple organizations. We have made a number of enhancements to the cmonkey2 application to enable and improve the integration within different environments, and we have created a new tools pipeline for generating EGRIN2 models in a largely automated way.

  19. Opportunities for Materials Science and Biological Research at the OPAL Research Reactor

    SciTech Connect (OSTI)

    Kennedy, S. J.

    2008-03-17

    Neutron scattering techniques have evolved over more than 1/2 century into a powerful set of tools for determination of atomic and molecular structures. Modern facilities offer the possibility to determine complex structures over length scales from {approx}0.1 nm to {approx}500 nm. They can also provide information on atomic and molecular dynamics, on magnetic interactions and on the location and behaviour of hydrogen in a variety of materials. The OPAL Research Reactor is a 20 megawatt pool type reactor using low enriched uranium fuel, and cooled by water. OPAL is a multipurpose neutron factory with modern facilities for neutron beam research, radioisotope production and irradiation services. The neutron beam facility has been designed to compete with the best beam facilities in the world. After six years in construction, the reactor and neutron beam facilities are now being commissioned, and we will commence scientific experiments later this year. The presentation will include an outline of the strengths of neutron scattering and a description of the OPAL research reactor, with particular emphasis on it's scientific infrastructure. It will also provide an overview of the opportunities for research in materials science and biology that will be possible at OPAL, and mechanisms for accessing the facilities. The discussion will emphasize how researchers from around the world can utilize these exciting new facilities.

  20. Current Status and Recommendations for the Future of Research, Teaching, and Testing in the Biological Sciences of Radiation Oncology: Report of the American Society for Radiation Oncology Cancer Biology/Radiation Biology Task Force, Executive Summary

    SciTech Connect (OSTI)

    Wallner, Paul E., E-mail: pwallner@theabr.org [21st Century Oncology, LLC, and the American Board of Radiology, Bethesda, Maryland (United States); Anscher, Mitchell S. [Department of Radiation Oncology, Virginia Commonwealth University, Richmond, Virginia (United States); Barker, Christopher A. [Department of Radiation Oncology, Memorial Sloan-Kettering Cancer Center, New York, New York (United States); Bassetti, Michael [Department of Human Oncology, University of Wisconsin Carbone Cancer Center, Madison, Wisconsin (United States); Bristow, Robert G. [Departments of Radiation Oncology and Medical Biophysics, Princess Margaret Cancer Center/University of Toronto, Toronto, Ontario (Canada); Cha, Yong I. [Department of Radiation Oncology, Norton Cancer Center, Louisville, Kentucky (United States); Dicker, Adam P. [Department of Radiation Oncology, Thomas Jefferson University, Philadelphia, Pennsylvania (United States); Formenti, Silvia C. [Department of Radiation Oncology, New York University, New York, New York (United States); Graves, Edward E. [Departments of Radiation Oncology and Radiology, Stanford University, Stanford, California (United States); Hahn, Stephen M. [Department of Radiation Oncology, University of Pennsylvania (United States); Hei, Tom K. [Center for Radiation Research, Columbia University, New York, New York (United States); Kimmelman, Alec C. [Department of Radiation Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts (United States); Kirsch, David G. [Department of Radiation Oncology, Duke University, Durham, North Carolina (United States); Kozak, Kevin R. [Department of Human Oncology, University of Wisconsin (United States); Lawrence, Theodore S. [Department of Radiation Oncology, University of Michigan (United States); Marples, Brian [Department of Radiation Oncology, Oakland University, Oakland, California (United States); and others

    2014-01-01

    In early 2011, a dialogue was initiated within the Board of Directors (BOD) of the American Society for Radiation Oncology (ASTRO) regarding the future of the basic sciences of the specialty, primarily focused on the current state and potential future direction of basic research within radiation oncology. After consideration of the complexity of the issues involved and the precise nature of the undertaking, in August 2011, the BOD empanelled a Cancer Biology/Radiation Biology Task Force (TF). The TF was charged with developing an accurate snapshot of the current state of basic (preclinical) research in radiation oncology from the perspective of relevance to the modern clinical practice of radiation oncology as well as the education of our trainees and attending physicians in the biological sciences. The TF was further charged with making suggestions as to critical areas of biological basic research investigation that might be most likely to maintain and build further the scientific foundation and vitality of radiation oncology as an independent and vibrant medical specialty. It was not within the scope of service of the TF to consider the quality of ongoing research efforts within the broader radiation oncology space, to presume to consider their future potential, or to discourage in any way the investigators committed to areas of interest other than those targeted. The TF charge specifically precluded consideration of research issues related to technology, physics, or clinical investigations. This document represents an Executive Summary of the Task Force report.

  1. Quantum information science as an approach to complex quantum systems

    E-Print Network [OSTI]

    Michael A. Nielsen

    2002-08-13

    What makes quantum information science a science? These notes explore the idea that quantum information science may offer a powerful approach to the study of complex quantum systems. We discuss how to quantify complexity in quantum systems, and argue that there are two qualitatively different types of complex quantum system. We also explore ways of understanding complex quantum dynamics by quantifying the strength of a quantum dynamical operation as a physical resource. This is the text for a talk at the ``Sixth International Conference on Quantum Communication, Measurement and Computing'', held at MIT, July 2002. Viewgraphs for the talk may be found at http://www.qinfo.org/talks/.

  2. Measuring the biological sustainability of marine fisheries: property rights, politics, and science

    E-Print Network [OSTI]

    Michael DeAlessi

    2008-01-01

    of sustainability to measure performance Fisheriesperformance indicators for biological sustainability, letsustainability, there needs to be better performance

  3. APPALACHIAN LABORATORY CHESAPEAKE BIOLOGICAL LABORATORY HORN POINT LABORATORY AN INSTITUTION OF THE UNIVERSITY SYSTEM OF MARYLAND

    E-Print Network [OSTI]

    Boynton, Walter R.

    APPALACHIAN LABORATORY CHESAPEAKE BIOLOGICAL LABORATORY HORN POINT LABORATORY AN INSTITUTION. of Budget and Management Please fax this form to: 410-333-7122 UMCES Agency #12;APPALACHIAN LABORATORY CHESAPEAKE BIOLOGICAL LABORATORY HORN POINT LABORATORY AN INSTITUTION OF THE UNIVERSITY SYSTEM OF MARYLAND

  4. Incorporating Optics into a Coupled Physical-Biological Forecasting System in the Monterey Bay

    E-Print Network [OSTI]

    Boss, Emmanuel S.

    Incorporating Optics into a Coupled Physical-Biological Forecasting System in the Monterey Bay Fei://www.marine.maine.edu/~eboss/index.html http://ourocean.jpl.nasa.gov/ LONG-TERM GOALS Modeling and predicting ocean optical properties for coastal waters requires linking optical properties with the physical, chemical, and biological processes

  5. Nuclear Systems Technology | Nuclear Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Cycle Systems Criticality Safety Irradiation Experiment Development and Execution Robotics & Remote Systems Engineering and Applications Thermal & Hydraulic Experiments &...

  6. PARMON: A Comprehensive Cluster Monitoring System School of Computing Science

    E-Print Network [OSTI]

    Melbourne, University of

    1 PARMON: A Comprehensive Cluster Monitoring System RAJKUMAR School of Computing Science Queensland@fit.qut.edu.au KRISHNA MOHAN and BINDU GOPAL Operating Systems Group Centre for Development of Advanced Computing 2 together as one system. Rapid changes in both areas of computing and communication (availability

  7. Donald James Berndt Information Systems and Decision Sciences

    E-Print Network [OSTI]

    Jank, Wolfgang

    1 Donald James Berndt Information Systems and Decision Sciences College of Business Administration.D. in Business Administration (Information Systems/Management), 1997 Stern School of Business, New York. Lucas, Jr. M.Phil. in Business Administration (Information Systems), 1993 Stern School of Business, New

  8. Journal of Computer and System Sciences 78 (2012) 11271141 Contents lists available at SciVerse ScienceDirect

    E-Print Network [OSTI]

    Ray, Asok

    2012-01-01

    Journal of Computer and System Sciences 78 (2012) 1127­1141 Contents lists available at SciVerse ScienceDirect Journal of Computer and System Sciences www.elsevier.com/locate/jcss Vector space rights reserved. doi:10.1016/j.jcss.2012.02.001 #12;1128 Y. Wen, A. Ray / Journal of Computer and System

  9. DOE Systems Biology Knowledgebase (KBASE) (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Arkin, Adam [LBNL

    2013-01-15

    Adam Arkin from Berkeley Lab on the DOE Systems Biology Knowledgebase (KBASE) at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

  10. DOE Systems Biology Knowledgebase (KBASE) (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Arkin, Adam [LBNL] [LBNL

    2012-03-21

    Adam Arkin from Berkeley Lab on the DOE Systems Biology Knowledgebase (KBASE) at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif

  11. Techniques for Probing the Processes by Which Microwaves Interact with Chemical and Biological Systems 

    E-Print Network [OSTI]

    Kay, Philip E

    2007-01-01

    Microwave heating is a relatively mature field and is theoretically well understood. However, recently there has been debate as to whether microwaves can interact with chemical and biological systems by means other than ...

  12. Building the DOE Systems Biology Knowledgebase (KBase) ( 7th Annual SFAF Meeting, 2012)

    ScienceCinema (OSTI)

    Brettin, Tom [Oak Ridge National Laboratory

    2013-03-22

    Tom Brettin on "Building the DOE Systems Biology Knowledgebase (KBase)" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

  13. Institute for Engineering and Systems Sciences

    E-Print Network [OSTI]

    van Tiggelen, Bart

    Sciences #12;A policy of international cooperation The Institute is engaged in intense international based in France or abroad, hosting staff from CNRS and from partner countries.They result in numerous Alliance for Energy Research Coordination) alliances. At the heart of tomorrow's technologies 5 5 9 8 11 7

  14. A Systems Biology Approach to Infectious Disease Research: Innovating the Pathogen-Host Research Paradigm

    SciTech Connect (OSTI)

    Aderem, Alan; Adkins, Joshua N.; Ansong, Charles; Galagan, James; Kaiser, Shari; Korth, Marcus J.; Law, G. L.; McDermott, Jason E.; Proll, Sean; Rosenberger, Carrie; Schoolnik, Gary; Katze, Michael G.

    2011-02-01

    The 20th century was marked by extraordinary advances in our understanding of microbes and infectious disease, but pandemics remain, food and water borne illnesses are frequent, multi-drug resistant microbes are on the rise, and the needed drugs and vaccines have not been developed. The scientific approaches of the past—including the intense focus on individual genes and proteins typical of molecular biology—have not been sufficient to address these challenges. The first decade of the 21st century has seen remarkable innovations in technology and computational methods. These new tools provide nearly comprehensive views of complex biological systems and can provide a correspondingly deeper understanding of pathogen-host interactions. To take full advantage of these innovations, the National Institute of Allergy and Infectious Diseases recently initiated the Systems Biology Program for Infectious Disease Research. As participants of the Systems Biology Program we think that the time is at hand to redefine the pathogen-host research paradigm.

  15. Science education As biological research increasingly relies on and requires the integration of different

    E-Print Network [OSTI]

    Gruber, Jonathan

    biology education. The integrative nature and diversity of research approaches employed in Evo, 2013). Here, we illustrate how principles and findings from Evo-Devo can be used to teach three core of a course or textbook. Incorporating Evo-Devo more fully into the standard biology curriculum will improve

  16. A Systems Biology Platform for Characterizing Regulatory and Metabolic

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield Municipal GasAdministrationTechnicalTechnicalScience.gov

  17. ScienceTreks: an Autonomous Digital Library System

    E-Print Network [OSTI]

    Marchese, Maurizio

    ScienceTreks: an Autonomous Digital Library System Alexander Ivanyukovich1 , Maurizio Marchese1 of semantic- aware services in the digital library domain. In this paper we first present and discuss. The proposed Autonomous Digital Library system can be used in automating end-to- end information retrieval

  18. 7.91J / 7.36J / 20.490J Foundations of Computational and Systems Biology, Spring 2004

    E-Print Network [OSTI]

    Burge, Christopher

    Serving as an introduction to computational biology, this course emphasizes the fundamentals of nucleic acid and protein sequence analysis, structural analysis, and the analysis of complex biological systems. The principles ...

  19. AcceptedPreprint Tissue Engineering and Delivery Systems Biotechnology and Bioengineering

    E-Print Network [OSTI]

    Yanikoglu, Berrin

    AcceptedPreprint 1 Tissue Engineering and Delivery Systems Biotechnology and Bioengineering DOI 10 Sciences, Sabanci University, Istanbul 34956, Turkey 2 Biological Sciences & Bioengineering, Faculty

  20. Method And System For Examining Biological Materials Using Low Power Cw Excitation Raman Spectroscopy.

    DOE Patents [OSTI]

    Alfano, Robert R. (Bronx, NY); Wang, Wubao (Flushing, NY)

    2003-05-06

    A method and system for examining biological materials using low-power cw excitation Raman spectroscopy. A low-power continuous wave (cw) pump laser beam and a low-power cw Stokes (or anti-Stokes) probe laser beam simultaneously illuminate a biological material and traverse the biological material in collinearity. The pump beam, whose frequency is varied, is used to induce Raman emission from the biological material. The intensity of the probe beam, whose frequency is kept constant, is monitored as it leaves the biological material. When the difference between the pump and probe excitation frequencies is equal to a Raman vibrational mode frequency of the biological material, the weak probe signal becomes amplified by one or more orders of magnitude (typically up to about 10.sup.4 -10.sup.6) due to the Raman emission from the pump beam. In this manner, by monitoring the intensity of the probe beam emitted from the biological material as the pump beam is varied in frequency, one can obtain an excitation Raman spectrum for the biological material tested. The present invention may be applied to in the in vivo and/or in vitro diagnosis of diabetes, heart disease, hepatitis, cancers and other diseases by measuring the characteristic excitation Raman lines of blood glucose, cholesterol, serum glutamic oxalacetic transaminase (SGOT)/serum glutamic pyruvic transaminase (SGPT), tissues and other corresponding Raman-active body constituents, respectively.

  1. Dynamic Processes in Biology, Chemistry, and Materials Science: Opportunities for UltraFast Transmission Electron Microscopy - Workshop Summary Report

    SciTech Connect (OSTI)

    Kabius, Bernd C.; Browning, Nigel D.; Thevuthasan, Suntharampillai; Diehl, Barbara L.; Stach, Eric A.

    2012-07-25

    This report summarizes a 2011 workshop that addressed the potential role of rapid, time-resolved electron microscopy measurements in accelerating the solution of important scientific and technical problems. A series of U.S. Department of Energy (DOE) and National Academy of Science workshops have highlighted the critical role advanced research tools play in addressing scientific challenges relevant to biology, sustainable energy, and technologies that will fuel economic development without degrading our environment. Among the specific capability needs for advancing science and technology are tools that extract more detailed information in realistic environments (in situ or operando) at extreme conditions (pressure and temperature) and as a function of time (dynamic and time-dependent). One of the DOE workshops, Future Science Needs and Opportunities for Electron Scattering: Next Generation Instrumentation and Beyond, specifically addressed the importance of electron-based characterization methods for a wide range of energy-relevant Grand Scientific Challenges. Boosted by the electron optical advancement in the last decade, a diversity of in situ capabilities already is available in many laboratories. The obvious remaining major capability gap in electron microscopy is in the ability to make these direct in situ observations over a broad spectrum of fast (µs) to ultrafast (picosecond [ps] and faster) temporal regimes. In an effort to address current capability gaps, EMSL, the Environmental Molecular Sciences Laboratory, organized an Ultrafast Electron Microscopy Workshop, held June 14-15, 2011, with the primary goal to identify the scientific needs that could be met by creating a facility capable of a strongly improved time resolution with integrated in situ capabilities. The workshop brought together more than 40 leading scientists involved in applying and/or advancing electron microscopy to address important scientific problems of relevance to DOE’s research mission. This workshop built on previous workshops and included three breakout sessions identifying scientific challenges in biology, biogeochemistry, catalysis, and materials science frontier areas of fundamental science that underpin energy and environmental science that would significantly benefit from ultrafast transmission electron microscopy (UTEM). In addition, the current status of time-resolved electron microscopy was examined, and the technologies that will enable future advances in spatio-temporal resolution were identified in a fourth breakout session.

  2. Theoretical Population Biology 102 (2015) 12 Contents lists available at ScienceDirect

    E-Print Network [OSTI]

    Rosenberg, Noah

    2015-01-01

    editorials described the topics of emphasis over the course of the journal's history (Rosenberg, 2013- spired by theoretical population biology''. For all its potential sig- nificance mathematically, it does

  3. Spontaneous Neural Firing in Biological & Artificial Neural Systems Christian R. Huyck and Richard Bowles

    E-Print Network [OSTI]

    Huyck, Chris

    Spontaneous Neural Firing in Biological & Artificial Neural Systems Christian R. Huyck and Richard of spontaneous neural activation may actually improve the system. Spontaneous neural firing can attenuate neural for a long period (relative to their normal firing rate), typically several milliseconds. When a neuron has

  4. Bond Computing Systems: a Biologically Inspired and High-level Dynamics Model for Pervasive Computing

    E-Print Network [OSTI]

    Dang, Zhe

    Bond Computing Systems: a Biologically Inspired and High-level Dynamics Model for Pervasive their com- putation power and verification problems. Among other results, we show that the computing power) techniques for pervasive computing systems. At a high-level, there are at least two views in modeling

  5. Bond Computing Systems: a Biologically Inspired and High-level Dynamics Model for Pervasive Computing

    E-Print Network [OSTI]

    Dang, Zhe

    Bond Computing Systems: a Biologically Inspired and High-level Dynamics Model for Pervasive. Targeting at modeling the high-level dynamics of pervasive comput- ing systems, we introduce Bond Computing are regular, and study their computation power and verification problems. Among other results, we show

  6. Thermodynamics for Systems Biology Peter Salamon, Anna Salamon, and Andrzej Konopka

    E-Print Network [OSTI]

    Salamon, Peter

    1 Thermodynamics for Systems Biology Peter Salamon, Anna Salamon, and Andrzej Konopka Department to thermodynamics designed specifically for the needs of the systems biologist. It departs from modern treatments of the subject that have to do with modeling, i.e. to communicate thermodynamics as a body of worldviews, methods

  7. Exploring the free-energy landscapes of biological systems with steered molecular dynamics

    E-Print Network [OSTI]

    Chen, Liao Y.

    1 Exploring the free-energy landscapes of biological systems with steered molecular dynamics fluctuation-dissipation-theorem (BD -FDT) to accurately compute the free-energy profiles for several compute the free-energy profiles for all the afore-listed systems that represent various important aspects

  8. Montana State University 1 Cell Biology and

    E-Print Network [OSTI]

    Maxwell, Bruce D.

    Montana State University 1 Cell Biology and Neuroscience The department participates: MSU's programs in the biological sciences are distributed across multiple departments. MSU does not have a single Department of Biology. For additional options see Biological Sciences (http

  9. Figure 1. Hydrologic Information System Overarching Vision. Data Interoperability in the Hydrologic Sciences

    E-Print Network [OSTI]

    Tarboton, David

    Figure 1. Hydrologic Information System Overarching Vision. Data Interoperability in the Hydrologic Sciences The CUAHSI Hydrologic Information System David G Tarboton1 , David Maidment2 , Ilya Zaslavsky3 Sciences. Hydrologic Information Systems (HIS) are part of this infrastructure. Hydrologic information

  10. Edinburgh Research Explorer Computational models in systems biology

    E-Print Network [OSTI]

    Millar, Andrew J.

    called process algebras and Petri nets offer alternative ways of constructing computational systems networks in an abstract way that is independent of particular mathe- matical techniques of analysis. Access

  11. IntegromeDB: an integrated system and biological search engine

    E-Print Network [OSTI]

    Baitaluk, Michael; Kozhenkov, Sergey; Dubinina, Yulia; Ponomarenko, Julia

    2012-01-01

    Wright A: Searching the Deep Web. CACM 2008, 51(10):14-15.a semantic, graph based, ‘deep web’ data integration systemIntegromeDB to tap into the Deep Web, the portion of the web

  12. Nonlinear stochastic system identification techniques for biological tissues/

    E-Print Network [OSTI]

    Chen, Yi, S.M. Massachusetts Institute of Technology

    2010-01-01

    This research develops a device capable of measuring the nonlinear dynamic mechanical properties of human tissue in vivo. The enabling technology is the use of nonlinear stochastic system identification techniques in ...

  13. Phys 597A: Graphs and Networks in Systems Biology

    E-Print Network [OSTI]

    Albert, Réka

    systems have an underlying network topology · nodes: routers, hosts · edges: wires, cables, wireless Q Q: What is the nature of edges? Internet, router level Internet, domain level #12;Map

  14. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservation ofAlbuquerque| Stanford SynchrotronVideo-Contest Sign In AboutBiologicalScience

  15. Optimal Size for Maximal Energy Efficiency in Information Processing of Biological Systems Due to Bistability

    E-Print Network [OSTI]

    Zhang, Chi; Wang, Long-Fei; Yue, Yuan; Yu, Lian-Chun

    2015-01-01

    Energy efficiency is closely related to the evolution of biological systems and is important to their information processing. In this paper, we calculated the excitation probability of a simple model of a bistable biological unit in response to pulsatile inputs, and its spontaneous excitation rate due to noise perturbation. Then we analytically calculated the mutual information, energy cost, and energy efficiency of an array of these bistable units. We found that the optimal number of units could maximize this array's energy efficiency in encoding pulse inputs, which depends on the fixed energy cost. We conclude that demand for energy efficiency in biological systems may strongly influence the size of these systems under the pressure of natural selection.

  16. Biological Systems Science Division (BSSD) | U.S. DOE Office of Science

    Office of Science (SC) Website

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power AdministrationRobust,Field-effectWorkingLosThe 26thI D- 6 0GrantsThe LifeAtomic,Benjamin D.Betsythe(SC)

  17. Biology is the study of life. Biologists analyze how systems function in organisms at the cellular and molecular levels

    E-Print Network [OSTI]

    Saldin, Dilano

    Biology is the study of life. Biologists analyze how systems function in organisms at the cellular and public sectors. People with degrees in biology are needed in areas as diverse as farming, food processing, and the environment, as well as in the biomedical and biotechnology fields. A degree in biology can also be used

  18. System for monitoring an industrial or biological process

    DOE Patents [OSTI]

    Gross, K.C.; Wegerich, S.W.; Vilim, R.B.; White, A.M.

    1998-06-30

    A method and apparatus are disclosed for monitoring and responding to conditions of an industrial process. Industrial process signals, such as repetitive manufacturing, testing and operational machine signals, are generated by a system. Sensor signals characteristic of the process are generated over a time length and compared to reference signals over the time length. The industrial signals are adjusted over the time length relative to the reference signals, the phase shift of the industrial signals is optimized to the reference signals and the resulting signals output for analysis by systems such as SPRT. 49 figs.

  19. System for monitoring an industrial or biological process

    DOE Patents [OSTI]

    Gross, Kenneth C. (Argonne, IL); Wegerich, Stephan W. (Argonne, IL); Vilim, Rick B. (Argonne, IL); White, Andrew M. (Skokie, IL)

    1998-01-01

    A method and apparatus for monitoring and responding to conditions of an industrial process. Industrial process signals, such as repetitive manufacturing, testing and operational machine signals, are generated by a system. Sensor signals characteristic of the process are generated over a time length and compared to reference signals over the time length. The industrial signals are adjusted over the time length relative to the reference signals, the phase shift of the industrial signals is optimized to the reference signals and the resulting signals output for analysis by systems such as SPRT.

  20. Coherent and Noncoherent Photonic Communications in Biological Systems

    E-Print Network [OSTI]

    S. Mayburov

    2009-09-14

    The possible mechanisms of communications between distant bio-systems by means of optical and UV photons are studied. It is argued that their main production mechanism is owed to the biochemical reactions, occurring during the cell division.. In the proposed model the bio-systems perform such communications, radiating the photons in form of short periodic bursts, which were observed experimentally for fish and frog eggs1. For experimentally measured photon rates the communication algorithm is supposedly similar to the exchange of binary encoded data in computer net via optical channels

  1. Optimiziing the laboratory monitoring of biological wastewater-purification systems

    SciTech Connect (OSTI)

    S.V. Gerasimov [OAO Koks, Kemerovo (Russian Federation)

    2009-05-15

    Optimization of the laboratory monitoring of biochemical wastewater-treatment systems at coke plants is considered, for the example of OAO Koks. By adopting a methodological approach to determine the necessary data from chemical analysis, it is possible to reduce the time, labor, and materials required for monitoring, without impairing the purification process or compromising the plant's environmental policies.

  2. Smart Sensing Strategies: Insights from a Biological Active Sensing System

    E-Print Network [OSTI]

    Nelson, Mark E.

    of smart sensing systems in diverse engineering applications. Certain freshwater fish from South America and Africa, known as weakly electric fish, use self-generated electrical energy to actively probe their environment. The fish emit millivolt-level electrical discharges and detect microvolt-level voltage

  3. High Altitude Unmanned Air System for Atmospheric Science Missions

    E-Print Network [OSTI]

    Sóbester, András

    High Altitude Unmanned Air System for Atmospheric Science Missions A. S´obester , S. J. Johnston and processing atmospheric observations across a range of altitudes. We consider the aeronautical a specified block of airspace. I. The Need for Wide Altitude Range Atmospheric Observations The ability

  4. Taiwan International Graduate Program Earth System Science Program

    E-Print Network [OSTI]

    Taiwan International Graduate Program Earth System Science Program Introduction Academia Sinica has established the Taiwan International Graduate Program (TIGP) in collaboration with a consortium of the key national research universities in Taiwan. The purpose of the program is to develop the research manpower

  5. Master of Science Program in Power and Energy Systems

    E-Print Network [OSTI]

    Haimovich, Alexander

    Engineering Newark College of Engineering New Jersey Institute of Technology WHY STUDY POWER AND ENERGY. Exploiting renewable energy sources ­ sun, wind, geothermal, (wave,) hydraulic and others ­ presents a mostMaster of Science Program in Power and Energy Systems Department of Electrical and Computer

  6. BACHELOR OF SCIENCE COMPUTER INFORMATION SYSTEMS & TECHNOLOGY

    E-Print Network [OSTI]

    Benos, Panayiotis "Takis"

    ST TERM CREDITS FIRST YEAR, 2ND TERM CREDITS FS 0102 Freshman Seminar 3 ENG 0102 English Composition Credits Per Academic Year 30 SECOND YEAR, 1ST TERM CREDITS SECOND YEAR, 2ND TERM CREDITS CIST 262 Systems Academic Year 31 THIRD YEAR, 1ST TERM CREDITS THIRD YEAR, 2ND TERM CREDITS CIST 1311 Electronic Commerce 3

  7. Proceedings of the Sudden Oak Death Third Science Symposium In Vitro Testing of Biological Control

    E-Print Network [OSTI]

    to the biocontrol agents tested. Key words: Phytophthora ramorum, Trichoderma spp., Streptomyces, biological control in response to biocontrol agents among isolates of P. ramorum belonging to different mating types and from for screening of biocontrol agents (BCAs) (table 1). To test the efficacy of biocontrol products in controlling

  8. Mathematical Biology 3 Jurgen Jost

    E-Print Network [OSTI]

    Arnold, Anton

    Mathematical Biology 3 J¨urgen Jost Max Planck Institute for Mathematics in the Sciences Leipzig, Germany Mathematical Biology 3 ­ p. 1 #12;Biological networks In biology, we find many examples of interacting elements: Mathematical Biology 3 ­ p. 2 #12;Biological networks In biology, we find many examples

  9. 2010 Atmospheric System Research (ASR) Science Team Meeting Summary

    SciTech Connect (OSTI)

    Dupont, DL

    2011-05-04

    This document contains the summaries of papers presented in poster format at the March 2010 Atmospheric System Research Science Team Meeting held in Bethesda, Maryland. More than 260 posters were presented during the Science Team Meeting. Posters were sorted into the following subject areas: aerosol-cloud-radiation interactions, aerosol properties, atmospheric state and surface, cloud properties, field campaigns, infrastructure and outreach, instruments, modeling, and radiation. To put these posters in context, the status of ASR at the time of the meeting is provided here.

  10. Systems Biology in Prokaryote - Eukaryote Symbiosis | Stanford Synchrotron

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservationBio-Inspired Solar Fuel Production 1:PhysicsSyndicated Content SystemRadiation

  11. Method And System For Examining Biological Materials Using Low Power Cw Excitation Raman Spectroscopy.

    DOE Patents [OSTI]

    Alfano, Robert R. (Bronx, NY); Wang, Wubao (Flushing, NY)

    2000-11-21

    A method and system for examining biological materials using low-power cw excitation Raman spectroscopy. In accordance with the teachings of the invention, a low-power continuous wave (cw) pump laser beam and a low-power cw Stokes (or anti-Stokes) probe laser beam simultaneously illuminate a biological material and traverse the biological material in collinearity. The pump beam, whose frequency is varied, is used to induce Raman emission from the biological material. The intensity of the probe beam, whose frequency is kept constant, is monitored as it leaves the biological material. When the difference between the pump and probe excitation frequencies is equal to a Raman vibrational mode frequency of the biological material, the weak probe signal becomes amplified by one or more orders of magnitude (typically up to about 10.sup.4 -10.sup.6) due to the Raman emission from the pump beam. In this manner, by monitoring the intensity of the probe beam emitted from the biological material as the pump beam is varied in frequency, one can obtain an excitation Raman spectrum for the biological material tested. The present invention may be applied to in the in vivo and/or in vitro diagnosis of diabetes, heart disease, hepatitis, cancers and other diseases by measuring the characteristic excitation Raman lines of blood glucose, cholesterol, serum glutamic oxalacetic transaminase (SGOT)/serum glutamic pyruvic tansaminase (SGPT), tissues and other corresponding Raman-active body constituents, respectively. For example, it may also be used to diagnose diseases associated with the concentration of Raman-active constituents in urine, lymph and saliva It may be used to identify cancer in the breast, cervix, uterus, ovaries and the like by measuring the fingerprint excitation Raman spectra of these tissues. It may also be used to reveal the growing of tumors or cancers by measuring the levels of nitric oxide in tissue.

  12. Rule-Based System Architecting of Earth Observing Systems: Earth Science Decadal Survey

    E-Print Network [OSTI]

    Selva, Daniel

    This paper presents a methodology to explore the architectural trade space of Earth observing satellite systems, and applies it to the Earth Science Decadal Survey. The architecting problem is formulated as a combinatorial ...

  13. Computational biology and high performance computing

    E-Print Network [OSTI]

    Shoichet, Brian

    2011-01-01

    Paper in Computational Biology The First Step Beyond theM . Glaeser, Mol. & Cell Biology, UCB and Life SciencesLBNL-44460 Computational Biology and High Performance

  14. Toward Systems Biology in Brown Algae to Explore Acclimation and Adaptation to the Shore Environment

    E-Print Network [OSTI]

    Paris-Sud XI, Université de

    Toward Systems Biology in Brown Algae to Explore Acclimation and Adaptation to the Shore,2 Catherine Boyen,1,2 and Anne Siegel4,5 Abstract Brown algae belong to a phylogenetic lineage distantly siliculosus as a model organism for brown algae has represented a framework in which several omics techniques

  15. Building the "Popper Machine": A Necessary Research Goal for Systems Biology

    E-Print Network [OSTI]

    Breitling, Rainer

    Building the "Popper Machine": A Necessary Research Goal for Systems Biology Rainer Breitling Plant that they require further formalization and automation, including (1) standardized and comprehensive representation of experimental evidence used for model building, addressing issues of reliability and consistency, (2) model

  16. Proposed Renewal of the Harvard/MIT DOE GTL Systems Biology Center 2007-2012

    E-Print Network [OSTI]

    Church, George M.

    Proposed Renewal of the Harvard/MIT DOE GTL Systems Biology Center 2007-2012 CONTENTS I1 of Metabolic Analysis Models and Evolution S6: Genomic structure, metagenomics, horizontal gene transfer-SysBio renewal proposal is configured to either stand alone with existing collaborations or to potentially act

  17. 8 Prospects for Biological Carbon Sinks in Greenhouse Gas Emissions Trading Systems

    E-Print Network [OSTI]

    8 Prospects for Biological Carbon Sinks in Greenhouse Gas Emissions Trading Systems John Reilly1. With emissions trading, emitters who found they could cheaply reduce their emissions might have allowances- ing Australia, Canada, Japan and Russia. This group also pushed strongly for inter- national emissions

  18. Beyond reductionism: metabolic circularity as a guiding vision for a real biology of systems

    E-Print Network [OSTI]

    Beyond reductionism: metabolic circularity as a guiding vision for a real biology of systems Athel advances, for example for creating artificial life or for taking biotechnology beyond the level and metabolome is conceptually artificial--however useful it may be in practice--as the proteome is part

  19. Biologically inspired artificial haircell sensors Today's engineering systems, such as machines, vehicles, robots, medical devices, home

    E-Print Network [OSTI]

    Valero-Cuevas, Francisco

    of polymer MEMS to enable simple sensor packaging and sensor-electronics integration. Short Bio: Chang LiuTitle: Biologically inspired artificial haircell sensors Abstract: Today's engineering systems, such as machines, vehicles, robots, medical devices, home appliances and entertainment devices, are often sensor

  20. Graduate School of Creative Science and Engineering Department of Industrial and Management Systems Engineering

    E-Print Network [OSTI]

    Kaji, Hajime

    Graduate School of Creative Science and Engineering Department of Industrial and Management and Engineering Department of Industrial and Management Systems Engineering Research Instruction Application; Graduate School of Creative Science and Engineering Department of Industrial and Management Systems

  1. Interaction of biological systems with static and ELF electric and magnetic fields

    SciTech Connect (OSTI)

    Anderson, L.E.; Kelman, B.J.; Weigel, R.J. (eds.)

    1987-01-01

    Although background levels of atmospheric electric and geomagnetic field levels are extremely low, over the past several decades, human beings and other life forms on this planet have been subjected to a dramatically changing electromagnetic milieu. An exponential increase in exposure to electromagnetic fields has occurred, largely because of such technological advances as the growth of electrical power generation and transmission systems, the increased use of wireless communications, and the use of radar. In addition, electromagnetic field generating devices have proliferated in industrial plants, office buildings, homes, public transportation systems, and elsewhere. Although significant increases have occurred in electromagnetic field strenghths spanning all frequency ranges, this symposium addresses only the impact of these fields at static and extremely low frequencies (ELF), primarily 50 and 60 Hz. This volume contains the proceedings of the symposium entitled /open quotes/Interaction of biological systems with static and ELF electric and magnetic fields/close quotes/. The purpose of the symposium was to provide a forum for discussions of all aspects of research on the interaction of static and ELF electromagnetic fields with biological systems. These systems include simple biophysical models, cell and organ preparations, whole animals, and man. Dosimetry, exposure system design, and artifacts in ELF bioeffects research were also addressed, along with current investigations that examine fundamental mechanisms of interactions between the fields and biological processes. Papers are indexed separately.

  2. EDITOR OF CONFERENCE PROCEEDINGS: 17. Health Monitoring of Structural and Biological Systems 2011 , Ed. T. Kundu, Pub.

    E-Print Network [OSTI]

    Wong, Pak Kin

    EDITOR OF CONFERENCE PROCEEDINGS: 17. Health Monitoring of Structural and Biological Systems 2011/NDE, March 7-10, 2011, San Diego, California, Vol. 7984, 2011 16. Health Monitoring of Structural 9780819475558, 2009. 14. Health Monitoring of Structural and Biological Systems 2008 , Ed. T. Kundu, Pub. SPIE

  3. Department of Electrical Engineering and Computer Science Discrete Event Systems Group

    E-Print Network [OSTI]

    Tilbury, Dawn

    Department of Electrical Engineering and Computer Science 1 Discrete Event Systems Group A Discrete 2000 #12;Department of Electrical Engineering and Computer Science 2 Discrete Event Systems Group of Electrical Engineering and Computer Science 3 Discrete Event Systems Group Requirements for Industrial

  4. Encyclopedia of Cognitive Science ENCYCLOPEDIA OF COGNITIVE SCIENCE

    E-Print Network [OSTI]

    Hilber, David

    the physical, biological, #12;Encyclopedia of Cognitive Science and behavioural sciences to place seriousEncyclopedia of Cognitive Science 173 ENCYCLOPEDIA OF COGNITIVE SCIENCE 2000 ©Macmillan Reference

  5. This major provides a solid foundation in both the biological sciences and the fundamental concepts of classical and quantum physics through a variety of

    E-Print Network [OSTI]

    Leahy, Richard M.

    and Modern Physics PHYS 190: Physics Discovery Series Upper Division Requirements* BISC 320: MolecularThis major provides a solid foundation in both the biological sciences and the fundamental concepts of classical and quantum physics through a variety of tools that include abstract thought, experimentation

  6. Nanoscale Electromechanics of Ferroelectric and Biological Systems: A New Dimension in Scanning Probe Microscopy

    SciTech Connect (OSTI)

    Kalinin, Sergei V [ORNL; Rodriguez, Brian J [ORNL; Jesse, Stephen [ORNL; Karapetian, Edgar [ORNL; Mirman, B [Suffolk University, Boston; Eliseev, E. A. [National Academy of Science of Ukraine, Kiev, Ukraine; Morozovska, A. N. [National Academy of Science of Ukraine, Kiev, Ukraine

    2007-01-01

    Functionality of biological and inorganic systems ranging from nonvolatile computer memories and microelectromechanical systems to electromotor proteins and cellular membranes is ultimately based on the intricate coupling between electrical and mechanical phenomena. In the past decade, piezoresponse force microscopy (PFM) has been established as a powerful tool for nanoscale imaging, spectroscopy, and manipulation of ferroelectric and piezoelectric materials. Here, we give an overview of the fundamental image formation mechanism in PFM and summarize recent theoretical and technological advances. In particular, we show that the signal formation in PFM is complementary to that in the scanning tunneling microscopy (STM) and atomic force microscopy (AFM) techniques, and we discuss the implications. We also consider the prospect of extending PFM beyond ferroelectric characterization for quantitative probing of electromechanical behavior in molecular and biological systems and high-resolution probing of static and dynamic polarization switching processes in low-dimensional ferroelectric materials and heterostructures.

  7. NSF Students Gain Hands-on Experience in Neutron Sciences at...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    at Oak Ridge National Laboratory in April for an intensive course in how to apply neutron scattering to their studies of materials science and biological systems. The...

  8. Citizen science in archaeology

    E-Print Network [OSTI]

    Smith, ML

    2014-01-01

    Melinda A. Zeder Smith] CITIZEN SCIENCE IN ARCHAEOLOGY 2014and Application of Citizen Science. Biological ConservationHilchey 2011 A Review of Citizen Science and Community-Based

  9. Invasion Biology Mark A. Davis

    E-Print Network [OSTI]

    Davis, Mark A.

    Invasion Biology Mark A. Davis 2 biology 2 MarkA.DavisInvasionBiology2 1 With the exception of climate change, biological invasions have probably received more attention during the past ten years than on the subject, Invasion Biology provides a comprehensive and up-to-date review of the science of biological

  10. Environmental Biology | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    microbiology, biogeochemistry, molecular biology, molecular dynamics, bioinformatics, genomics, neutron science, chemistry, and computing-and spans multiple scales, from the...

  11. Academics in Turkey Science, Technology and Innovation System in Turkey and

    E-Print Network [OSTI]

    Moeller, Ralf

    Academics in Turkey Science, Technology and Innovation System in Turkey and some funding issuessome;Science, Technology and Innovation System in Turkey 3 Main actors: · Supreme Council for Science and Technology (MSIT) Scientific and Technological Research Council of Turkey (T�BTAK) Small and Medium

  12. Quantum physics meets biology

    E-Print Network [OSTI]

    Markus Arndt; Thomas Juffmann; Vlatko Vedral

    2009-11-01

    Quantum physics and biology have long been regarded as unrelated disciplines, describing nature at the inanimate microlevel on the one hand and living species on the other hand. Over the last decades the life sciences have succeeded in providing ever more and refined explanations of macroscopic phenomena that were based on an improved understanding of molecular structures and mechanisms. Simultaneously, quantum physics, originally rooted in a world view of quantum coherences, entanglement and other non-classical effects, has been heading towards systems of increasing complexity. The present perspective article shall serve as a pedestrian guide to the growing interconnections between the two fields. We recapitulate the generic and sometimes unintuitive characteristics of quantum physics and point to a number of applications in the life sciences. We discuss our criteria for a future quantum biology, its current status, recent experimental progress and also the restrictions that nature imposes on bold extrapolations of quantum theory to macroscopic phenomena.

  13. RIKEN Center for Life Science Technologies Division of Structural and Synthetic Biology

    E-Print Network [OSTI]

    Fukai, Tomoki

    Function Conversion Technology Team Genetic Diagnosis Technology Unit Epigenome Technology Exploration Unit Cell Conversion Technology Unit Genome Network Analysis Support Facility Nucleic Acid Diagnostic System Structural Bioinformatics Team Post-Transcriptional Control Research Unit Translation Factors Structural

  14. Theory in Biology Computational

    E-Print Network [OSTI]

    Goldbeter, Albert

    Magazine R601 Theory in Biology Computational biology: A propagating wave of interest Albert Goldbeter Systems biology, computational biology, integrative biology... many names are being used and tendency to take a global view of problems in biology. This field is not entirely novel, but what is clear

  15. Development and Applications Of Photosensitive Device Systems To Studies Of Biological And Organic Materials

    SciTech Connect (OSTI)

    Gruner, Sol

    2012-01-20

    The primary focus of the grant is the development of new x-ray detectors for biological and materials work at synchrotron sources, especially Pixel Array Detectors (PADs), and the training of students via research applications to problems in biophysics and materials science using novel x-ray methods. This Final Progress Report provides a high-level overview of the most important accomplishments. These major areas of accomplishment include: (1) Development and application of x-ray Pixel Array Detectors; (2) Development and application of methods of high pressure x-ray crystallography as applied to proteins; (3) Studies on the synthesis and structure of novel mesophase materials derived from block co-polymers.

  16. DEPARTMENT OF DEPARTMENT OF BIOLOGY

    E-Print Network [OSTI]

    Turc, Catalin

    Masters of Science Degree Plan A: Thesis DEPARTMENT OF BIOLOGY CASE WESTERN RESERVE UNIVERSITY #12;DEPARTMENT OF BIOLOGY Masters of Science Degree (Plan A) Thesis The Plan A Master of Science Degree in Biology is a thesis,graduate degree program.The purpose of the program is to provide advanced exposure

  17. Biological optimization systems for enhancing photosynthetic efficiency and methods of use

    DOE Patents [OSTI]

    Hunt, Ryan W.; Chinnasamy, Senthil; Das, Keshav C.; de Mattos, Erico Rolim

    2012-11-06

    Biological optimization systems for enhancing photosynthetic efficiency and methods of use. Specifically, methods for enhancing photosynthetic efficiency including applying pulsed light to a photosynthetic organism, using a chlorophyll fluorescence feedback control system to determine one or more photosynthetic efficiency parameters, and adjusting one or more of the photosynthetic efficiency parameters to drive the photosynthesis by the delivery of an amount of light to optimize light absorption of the photosynthetic organism while providing enough dark time between light pulses to prevent oversaturation of the chlorophyll reaction centers are disclosed.

  18. Photosynthetic Systems | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power AdministrationRobust,Field-effectWorkingLosThe 26thI D-Nicholas Turro, 1982SciencePhotosynthetic Systems

  19. WHITE PAPER 20092010 DECADAL SURVEY ON BIOLOGICAL AND PHYSICAL SCIENCES IN SPACE

    E-Print Network [OSTI]

    Jenkin, Michael R. M.

    for Vision Research, York University, Toronto, Ontario M3J 1P3 Canada Summary "introspective") senses including those associated with joint weighting and normal muscle tension. Finally systems it is perhaps not surprising that astronauts operating in microgravity have reported a wide range

  20. Natural and Life Sciences: 4 hours BIOL 1710 and 1730 Principles of Biology I and Laboratory _____

    E-Print Network [OSTI]

    _____ MATH 1720 Calculus II _____ MATH 2700 Linear Algebra and Vector Geometry _____ MATH 2730 Calculus III Systems _____ MATH 4520 Introduction to Functions of a Complex _____ Variable 2. Algebra MATH 3400 Number Theory _____ MATH 3510 Introduction to Abstract Algebra I _____ MATH 3520 Abstract Algebra II _____ MATH

  1. Complex Systems Science for Subsurface Fate and Transport Report from the August 2009 Workshop

    SciTech Connect (OSTI)

    2010-03-01

    The subsurface environment, which encompasses the vadose and saturated zones, is a heterogeneous, geologically complex domain. Believed to contain a large percentage of Earth's biomass in the form of microorganisms, the subsurface is a dynamic zone where important biogeochemical cycles work to sustain life. Actively linked to the atmosphere and biosphere through the hydrologic and carbon cycles, the subsurface serves as a storage location for much of Earth's fresh water. Coupled hydrological, microbiological, and geochemical processes occurring within the subsurface environment cause the local and regional natural chemical fluxes that govern water quality. These processes play a vital role in the formation of soil, economically important fossil fuels, mineral deposits, and other natural resources. Cleaning up Department of Energy (DOE) lands impacted by legacy wastes and using the subsurface for carbon sequestration or nuclear waste isolation require a firm understanding of these processes and the documented means to characterize the vertical and spatial distribution of subsurface properties directing water, nutrient, and contaminant flows. This information, along with credible, predictive models that integrate hydrological, microbiological, and geochemical knowledge over a range of scales, is needed to forecast the sustainability of subsurface water systems and to devise ways to manage and manipulate dynamic in situ processes for beneficial outcomes. Predictive models provide the context for knowledge integration. They are the primary tools for forecasting the evolving geochemistry or microbial ecology of groundwater under various scenarios and for assessing and optimizing the potential effectiveness of proposed approaches to carbon sequestration, waste isolation, or environmental remediation. An iterative approach of modeling and experimentation can reveal powerful insights into the behavior of subsurface systems. State-of-science understanding codified in models can provide a basis for testing hypotheses, guiding experiment design, integrating scientific knowledge on multiple environmental systems into a common framework, and translating this information to support informed decision making and policies. Subsurface behavior typically has been investigated using reductionist, or bottom-up approaches. In these approaches, mechanisms of small-scale processes are quantified, and key aspects of their behaviors are moved up to the prediction scale using scaling laws and models. Reductionism has and will continue to yield essential and comprehensive understanding of the molecular and microscopic underpinnings of component processes. However, system-scale predictions cannot always be made with bottom-up approaches because the behaviors of subsurface environments often simply do not result from the sum of smaller-scale process interactions. Systems exhibiting such behavior are termed complex and can range from the molecular to field scale in size. Complex systems contain many interactive parts and display collective behavior including emergence, feedback, and adaptive mechanisms. Microorganisms - key moderators of subsurface chemical processes - further challenge system understanding and prediction because they are adaptive life forms existing in an environment difficult to observe and measure. A new scientific approach termed complex systems science has evolved from the critical need to understand and model these systems, whose distinguishing features increasingly are found to be common in the natural world. In contrast to reductionist approaches, complexity methods often use a top-down approach to identify key interactions controlling diagnostic variables at the prediction scale; general macroscopic laws controlling system-scale behavior; and essential, simplified models of subsystem interactions that enable prediction. This approach is analogous to systems biology, which emphasizes the tight coupling between experimentation and modeling and is defined, in the context of Biological Systems Science research programs under DOE'

  2. Experimental proposal for testing the Emergence of Environment Induced (EIN) Classical Selection rules with Biological Systems

    E-Print Network [OSTI]

    Thomas Durt

    2010-03-14

    According to the so-called Quantum Darwinist approach, the emergence of "classical islands" from a quantum background is assumed to obey a (selection) principle of maximal information. We illustrate this idea by considering the coupling of two oscillators (modes). As our approach suggests that the classical limit could have emerged throughout a long and progressive Evolution mechanism, it is likely that primitive living organisms behave in a "more quantum", "less classical" way than more evolved ones. This brings us to seriously consider the possibility to measure departures from classicality exhibited by biological systems. We describe an experimental proposal the aimed at revealing the presence of entanglement in the biophotonic radiation emitted by biological sources.

  3. Department of Computer & Information Sciences University of Delaware 302-831-2712 www.cis.udel.edu information systems

    E-Print Network [OSTI]

    Gao, Guang R.

    Department of Computer & Information Sciences · University of Delaware · 302-831-2712 · www Sciences offers students a Bachelor of Science major in Information Systems (INSY-BS), which combines science. #12;SpringFall Information Systems Curriculum Department of Computer & Information Sciences

  4. Indoor Air Nuclear, Biological, and Chemical Health Modeling and Assessment System

    SciTech Connect (OSTI)

    Stenner, Robert D.; Hadley, Donald L.; Armstrong, Peter R.; Buck, John W.; Hoopes, Bonnie L.; Janus, Michael C.

    2001-03-01

    Indoor air quality effects on human health are of increasing concern to public health agencies and building owners. The prevention and treatment of 'sick building' syndrome and the spread of air-borne diseases in hospitals, for example, are well known priorities. However, increasing attention is being directed to the vulnerability of our public buildings/places, public security and national defense facilities to terrorist attack or the accidental release of air-borne biological pathogens, harmful chemicals, or radioactive contaminants. The Indoor Air Nuclear, Biological, and Chemical Health Modeling and Assessment System (IA-NBC-HMAS) was developed to serve as a health impact analysis tool for use in addressing these concerns. The overall goal was to develop a user-friendly fully functional prototype Health Modeling and Assessment system, which will operate under the PNNL FRAMES system for ease of use and to maximize its integration with other modeling and assessment capabilities accessible within the FRAMES system (e.g., ambient air fate and transport models, water borne fate and transport models, Physiologically Based Pharmacokinetic models, etc.). The prototype IA-NBC-HMAS is designed to serve as a functional Health Modeling and Assessment system that can be easily tailored to meet specific building analysis needs of a customer. The prototype system was developed and tested using an actual building (i.e., the Churchville Building located at the Aberdeen Proving Ground) and release scenario (i.e., the release and measurement of tracer materials within the building) to ensure realism and practicality in the design and development of the prototype system. A user-friendly "demo" accompanies this report to allow the reader the opportunity for a "hands on" review of the prototype system's capability.

  5. "Development of an Integrated EMSL MS and NMR Metabolic Flux Analysis Capability In Support of Systems Biology

    E-Print Network [OSTI]

    fluxes using stable isotope labeling and either nuclear magnetic resonance (NMR) or mass spectrometry (MS research in systems biology and metabolic engineering. It will allow us to provide a complete package

  6. Life Sciences Division ENewsletter January 31, 2008

    E-Print Network [OSTI]

    Knowles, David William

    programs in radiation research and NASA to initiate systems biology approaches to low dose radiation Sciences Division. In this issue: DOE scientific focus area notes o Low Dose Radiation Dose Radiation Research Investigator's Workshop and Int. Workshop in Systems Radiation Biology

  7. Systems biology analysis of Escherichia coli for discovery and metabolic engineering

    E-Print Network [OSTI]

    Orth, Jeffrey David

    2012-01-01

    the unification of biology. The Gene Ontology Consortium.cellular and molecular biology. 2nd ed. 1996, ASM Press:Journal of Theoretical Biology, 1993. 165(4): p. 503- Feist,

  8. Systems Biology Approaches Investigating Cardiac Epigenome Dynamics in Heart Hypertrophy and Failure

    E-Print Network [OSTI]

    Chen, Haodong

    2013-01-01

    reviews. Molecular cell biology 11, 264–75 (2010). Cairns,structural & molecular biology 18, 107–14 Li, G. et al.data. PLoS computational biology 5, e1000598 (2009).

  9. Architecture & Civil Engineering Biology & Biochemistry

    E-Print Network [OSTI]

    Burton, Geoffrey R.

    Department Architecture & Civil Engineering Biology & Biochemistry Chemical Engineering Chemistry Computer Science Economics Education Electronic & Electrical Engineering Department Health Management Mathematical Sciences Mechanical Engineering Natural Sciences (please go to the Info Fair ­ no staff in office

  10. Curriculum Vitae of Dr. T. Grandon Gill Information Systems and Decision Sciences CIS1040

    E-Print Network [OSTI]

    Jank, Wolfgang

    Curriculum Vitae of Dr. T. Grandon Gill Information Systems and Decision Sciences ­ CIS1040 (1980-1982). D.B.A., Management of Information Systems. Harvard Business School (1986-1991). ACADEMIC POSITIONS: 2009- University of South Florida Tampa, FL Professor. Information Systems and Decision Sciences

  11. Citizen Science System Assemblages: Toward Greater Understanding of Technologies to Support Crowdsourced

    E-Print Network [OSTI]

    Crowston, Kevin

    Citizen Science System Assemblages: Toward Greater Understanding of Technologies to Support crowston@syr.edu ABSTRACT We explore the nature of technologies to support citizen science, a method different citizen science platforms may be comprised of widely varying functionalities, yet still support

  12. CLIMATE SCIENCE The Community Climate System Model results from a multi-agency collaboration

    E-Print Network [OSTI]

    Long, Nicholas

    . Thus, climate science--which by nature involves advanced computing technology and methods--has beenCLIMATE SCIENCE The Community Climate System Model results from a multi-agency collaboration designed to construct cutting-edge climate science simulation models for a broad research community

  13. Computer Information Systems Association for Computing Machinery (ACM) delivers resources that advance computing as a science

    E-Print Network [OSTI]

    Computer Information Systems Association for Computing Machinery (ACM) delivers resources that advance computing as a science and a profession. ACM provides the computing field's premier Digital

  14. Computer Science and Computer Information Systems Faculty: M. Branton, H. ElAarag, D. Plante, H. Pulapaka

    E-Print Network [OSTI]

    Miles, Will

    Computer Science and Computer Information Systems Faculty: M. Branton, H. ElAarag, D. Plante, H they can concentrate in one of two defined degree tracks, Computer Science and Computer Information Systems degree in Computer Science or in Computer Information Systems, as appropriate. The Computer Science track

  15. A simple production-consumption system This note is for SB200, "A systems approach to biology". It provides more details of the analysis

    E-Print Network [OSTI]

    Gunawardena, Jeremy

    A simple production-consumption system This note is for SB200, "A systems approach to biology". It provides more details of the analysis of the production-consumption system that was done in the first to one of the TAs. I explained in class how the production-consumption system leads to the differential

  16. NERSC Science Gateways

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Users Science Gateways Science Gateways About Science Gateways A science gateway is a web based interface to access HPC computers and storage systems. Gateways allow science...

  17. Science, Technology & Law (STL) Program "The patent system added the fuel of interest to the fire of genius."

    E-Print Network [OSTI]

    Zallen, Richard

    Science, Technology & Law (STL) Program "The patent system added and ensuring access to such property in the interest of society. As science challenges in areas such as the health sciences, bioethics, environmental

  18. Campaign-level science traceability for Earth observation system architecting

    E-Print Network [OSTI]

    Seher, Theodore K. (Theodore Kimball)

    2009-01-01

    The Earth Sciences Decadal Survey of 2007 presented a comprehensive vision for the evolution of space-based Earth Science resources. The practical development of the Decadal campaign, however, has highlighted four challenges ...

  19. Tenure-Track Faculty Position in Biological Oceanography The College of Marine Science at the University of South Florida invites applications for a tenure-track, nine-month academic

    E-Print Network [OSTI]

    Meyers, Steven D.

    Tenure-Track Faculty Position in Biological Oceanography The College of Marine Science in Biological Oceanography at the Assistant, Associate, or Professor level. Rank is dependent on qualifications in biogeochemistry; and ecological and biogeochemical forecasting. A deep understanding of oceanography and the role

  20. Towards Composing Data Aware Systems Biology Workflows on Cloud Platforms: A MeDICi-based Approach

    SciTech Connect (OSTI)

    Gorton, Ian; Liu, Yan; Yin, Jian; Kulkarni, Anand V.; Wynne, Adam S.

    2011-09-08

    Cloud computing is being increasingly adopted for deploying systems biology scientific workflows. Scientists developing these workflows use a wide variety of fragmented and competing data sets and computational tools of all scales to support their research. To this end, the synergy of client side workflow tools with cloud platforms is a promising approach to share and reuse data and workflows. In such systems, the location of data and computation is essential consideration in terms of quality of service for composing a scientific workflow across remote cloud platforms. In this paper, we describe a cloud-based workflow for genome annotation processing that is underpinned by MeDICi - a middleware designed for data intensive scientific applications. The workflow implementation incorporates an execution layer for exploiting data locality that routes the workflow requests to the processing steps that are colocated with the data. We demonstrate our approach by composing two workflowswith the MeDICi pipelines.

  1. Final Report - Phylogenomic tools and web resources for the Systems Biology Knowledgebase

    SciTech Connect (OSTI)

    Sjolander, Kimmen

    2014-11-07

    The major advance during this last reporting period (8/15/12 to present) is our release of data on the PhyloFacts website: phylogenetic trees, multiple sequence alignments and other data for protein families are now available for download from http://phylogenomics.berkeley.edu/data/. This project as a whole aimed to develop high-throughput functional annotation systems that exploit information from protein 3D structure and evolution to provide highly precise inferences of various aspects of gene function, including molecular function, biological process, pathway association, Pfam domains, cellular localization and so on. We accomplished these aims by developing and testing different systems on a database of protein family trees: the PhyloFacts Phylogenomic Encyclopedia (at http://phylogenomics.berkeley.edu/phylofacts/ ).

  2. How sulphate-reducing microorganisms cope with stress: Lessons from systems biology

    SciTech Connect (OSTI)

    Zhou, J.; He, Q.; Hemme, C.L.; Mukhopadhyay, A.; Hillesland, K.; Zhou, A.; He, Z.; Nostrand, J.D. Van; Hazen, T.C.; Stahl, D.A.; Wall, J.D.; Arkin, A.P.

    2011-04-01

    Sulphate-reducing microorganisms (SRMs) are a phylogenetically diverse group of anaerobes encompassing distinct physiologies with a broad ecological distribution. As SRMs have important roles in the biogeochemical cycling of carbon, nitrogen, sulphur and various metals, an understanding of how these organisms respond to environmental stresses is of fundamental and practical importance. In this Review, we highlight recent applications of systems biology tools in studying the stress responses of SRMs, particularly Desulfovibrio spp., at the cell, population, community and ecosystem levels. The syntrophic lifestyle of SRMs is also discussed, with a focus on system-level analyses of adaptive mechanisms. Such information is important for understanding the microbiology of the global sulphur cycle and for developing biotechnological applications of SRMs for environmental remediation, energy production, biocorrosion control, wastewater treatment and mineral recovery.

  3. The Ghost of the Bomb : the Bravo Medical Program, scientific uncertainty, and the legacy of U.S. Cold War science, 1954-2005

    E-Print Network [OSTI]

    Harkewicz, Laura J.

    2010-01-01

    science: The Atomic Energy Commission’s laboratory system. ”J. Samuel. “The Atomic Energy Commission and the Politics ofUnited States Atomic Energy Commission Division of Biology

  4. Magnetophoretic bead trapping in a high-flowrate biological detection system.

    SciTech Connect (OSTI)

    Galambos, Paul C.; Hopkins, Matthew Morgan; Rahimian, Kamayar; Martin, James Ellis; Anderson, G. Ronald; Clem, Paul Gilbert; Rohwer, Lauren Elizabeth Shea; Lemp, Thomas; Derzon, Mark Steven; James, Conrad D.

    2005-03-01

    This report contains the summary of the 'Magnetophoretic Bead Trapping in a High-Flowrate Biological Detection System' LDRD project 74795. The objective of this project is to develop a novel biodetection system for high-throughput sample analysis. The chief application of this system is in detection of very low concentrations of target molecules from a complex liquid solution containing many different constituents--some of which may interfere with identification of the target molecule. The system is also designed to handle air sampling by using an aerosol system (for instance a WESP - Wet Electro-Static Precipitator, or an impact spray system) to get air sample constituents into the liquid volume. The system described herein automatically takes the raw liquid sample, whether air converted or initially liquid matrix, and mixes in magnetic detector beads that capture the targets of interest and then performs the sample cleanup function, allowing increased sensitivity and eliminating most false positives and false negatives at a downstream detector. The surfaces of the beads can be functionalized in a variety of ways in order to maximize the number of targets to be captured and concentrated. Bacteria and viruses are captured using antibodies to surface proteins on bacterial cell walls or viral particle coats. In combination with a cell lysis or PCR (Polymerase Chain Reaction), the beads can be used as a DNA or RNA probe to capture nucleic acid patterns of interest. The sample cleanup capability of this system would allow different raw biological samples, such as blood or saliva to be analyzed for the presence of different infectious agents (e.g. smallpox or SARS). For future studies, we envision functionalizing bead surfaces to bind to chemical weapons agents, radio-isotopes, and explosives. The two main objectives of this project were to explore methods for enhancing the mixing of the capture microspheres in the sample, and to develop a novel high-throughput magnetic microsphere trap. We have developed a novel technique using the magnetic capture microspheres as 'stirrer bars' in a fluid sample to enhance target binding to the microsphere surfaces. We have also made progress in developing a polymer-MEMS electromagnet for trapping magnetic spheres in a high-flowrate fluid format.

  5. Integrated Omics in Systems Biology: The New Frontier for Environmental Biotechnology

    SciTech Connect (OSTI)

    Hazen, Terry C.

    2008-08-12

    Environmental biotechnology encompasses a wide range of characterization, monitoring and control for bioenergy and bioremediation technologies that are based on biological processes. Recent breakthroughs in our understanding of biogeochemical processes and genomics are leading to exciting new and cost effective ways to monitor and manipulate the environment and potentially produce bioenergy fuels as we also cleanup the environment. Indeed, our ability to sequence an entire microbial genome in just a few hours is leading to similar breakthroughs in characterizing proteomes, metabolomes, phenotypes, and fluxes for organisms, populations, and communities. Understanding and modeling functional microbial community structure and stress responses in subsurface environments has tremendous implications for our fundamental understanding of biogeochemistry and the potential for making biofuel breakthroughs. Monitoring techniques that inventory and monitor terminal electron acceptors and electron donors, enzyme probes that measure functional activity in the environment, functional genomic microarrays, phylogenetic microarrays, metabolomics, proteomics, and quantitative PCR are also being rapidly adapted for studies in environmental biotechnology. Integration of all of these new high throughput techniques using the latest advances in bioinformatics and modeling will enable break-through science in environmental biotechnology. A review of these techniques with examples from field studies and lab simulations will be discussed.

  6. arXiv:q-bio/0607031v1[q-bio.NC]20Jul2006 From Systems Biology to Dynamical

    E-Print Network [OSTI]

    Tóth, János

    ´oth Department of Analysis, Institute of Mathematics, Faculty of Sciences, Budapest University of Technology with microscopic details. It might be interpreted as the renaissance of cybernetics [1] and of system theory [2

  7. DEPARTMENT OF BIOLOGY Hurricane Savitz Hits Florida

    E-Print Network [OSTI]

    Kelly, John J.

    DEPARTMENT OF BIOLOGY Hurricane Savitz Hits Florida (Photo Credit: Michael Masellis, Biology Major Hurricane Savitz Hits Florida Future Science Teachers' Club Recent Grant Successes Forthcoming Publications

  8. Department of Biological Sciences, California State University, Sacramento, 6000 J Street, Sacramento, CA, 95819 USA Red de Interacciones Multitrficas, Instituto de Ecologa, A. C., Apartado Postal 63, Xalapa, Veracruz, 91000 Mxico

    E-Print Network [OSTI]

    Sehgal, Ravinder

    1 Department of Biological Sciences, California State University, Sacramento, 6000 J Street, Sacramento, CA, 95819 USA 2 Red de Interacciones Multitróficas, Instituto de Ecología, A. C., Apartado Postal Sciences, California State University, Sacramento, 6000 J Street, Sacramento, CA, 95819 USA 6 Corresponding

  9. A New Biology for the 21st Century; Ensuring the United States Leads the Coming Biology Revolution

    SciTech Connect (OSTI)

    Committee on a New Biology for the 21st Century; Ensuring the United States Leads the Coming Biology Revolution; National Research Council

    2012-05-10

    In July, 2008, the National Institutes of Health (NIH), National Science Foundation (NSF), and Department of Energy (DOE) asked the National Research Council’s Board on Life Sciences to convene a committee to examine the current state of biological research in the United States and recommend how best to capitalize on recent technological and scientific advances that have allowed biologists to integrate biological research findings, collect and interpret vastly increased amounts of data, and predict the behavior of complex biological systems. From September 2008 through July of 2009, a committee of 16 experts from the fields of biology, engineering and computational science undertook to delineate those scientific and technological advances and come to a consensus on how the U.S. might best capitalize on them. This report, authored by the Committee on a New Biology for the 21st Century, describes the committee’s work and conclusions.

  10. Ultrashort pulse high repetition rate laser system for biological tissue processing

    DOE Patents [OSTI]

    Neev, Joseph (Laguna Beach, CA); Da Silva, Luiz B. (Danville, CA); Matthews, Dennis L. (Moss Beach, CA); Glinsky, Michael E. (Livermore, CA); Stuart, Brent C. (Fremont, CA); Perry, Michael D. (Livermore, CA); Feit, Michael D. (Livermore, CA); Rubenchik, Alexander M. (Livermore, CA)

    1998-01-01

    A method and apparatus is disclosed for fast, efficient, precise and damage-free biological tissue removal using an ultrashort pulse duration laser system operating at high pulse repetition rates. The duration of each laser pulse is on the order of about 1 fs to less than 50 ps such that energy deposition is localized in a small depth and occurs before significant hydrodynamic motion and thermal conduction, leading to collateral damage, can take place. The depth of material removed per pulse is on the order of about 1 micrometer, and the minimal thermal and mechanical effects associated with this ablation method allows for high repetition rate operation, in the region 10 to over 1000 Hertz, which, in turn, achieves high material removal rates. The input laser energy per ablated volume of tissue is small, and the energy density required to ablate material decreases with decreasing pulse width. The ablation threshold and ablation rate are only weakly dependent on tissue type and condition, allowing for maximum flexibility of use in various biological tissue removal applications. The use of a chirped-pulse amplified Titanium-doped sapphire laser is disclosed as the source in one embodiment.

  11. Ultrashort pulse high repetition rate laser system for biological tissue processing

    DOE Patents [OSTI]

    Neev, J.; Da Silva, L.B.; Matthews, D.L.; Glinsky, M.E.; Stuart, B.C.; Perry, M.D.; Feit, M.D.; Rubenchik, A.M.

    1998-02-24

    A method and apparatus are disclosed for fast, efficient, precise and damage-free biological tissue removal using an ultrashort pulse duration laser system operating at high pulse repetition rates. The duration of each laser pulse is on the order of about 1 fs to less than 50 ps such that energy deposition is localized in a small depth and occurs before significant hydrodynamic motion and thermal conduction, leading to collateral damage, can take place. The depth of material removed per pulse is on the order of about 1 micrometer, and the minimal thermal and mechanical effects associated with this ablation method allows for high repetition rate operation, in the region 10 to over 1000 Hertz, which, in turn, achieves high material removal rates. The input laser energy per ablated volume of tissue is small, and the energy density required to ablate material decreases with decreasing pulse width. The ablation threshold and ablation rate are only weakly dependent on tissue type and condition, allowing for maximum flexibility of use in various biological tissue removal applications. The use of a chirped-pulse amplified Titanium-doped sapphire laser is disclosed as the source in one embodiment. 8 figs.

  12. Supporting Organizations | Nuclear Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nuclear Science Engineering Fusion & Materials for Nuclear Systems Nuclear Science Home | Science & Discovery | Nuclear Science | Supporting Organizations SHARE Supporting...

  13. Advanced neutron irradiation system using Texas A&M University Nuclear Science Center Reactor 

    E-Print Network [OSTI]

    Jang, Si Young

    2005-11-01

    A heavily filtered fast neutron irradiation system (FNIS) was developed for a variety of applications, including the study of long-term health effects of fast neutrons by evaluating the biological mechanisms of damage in ...

  14. Designing Biological Systems for Sustainability and Programmed Environmental Interface (2011 JGI User Meeting)

    ScienceCinema (OSTI)

    Silver, Pam [Harvard University

    2011-06-03

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Pam Silver of Harvard University gives a presentation on "Designing Biological Systems for Sustainability and Programmed Environmental Interface" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  15. Designing Biological Systems for Sustainability and Programmed Environmental Interface (2011 JGI User Meeting)

    SciTech Connect (OSTI)

    Silver, Pam [Harvard University] [Harvard University

    2011-03-23

    The U.S. Department of Energy Joint Genome Institute (JGI) invited scientists interested in the application of genomics to bioenergy and environmental issues, as well as all current and prospective users and collaborators, to attend the annual DOE JGI Genomics of Energy & Environment Meeting held March 22-24, 2011 in Walnut Creek, Calif. The emphasis of this meeting was on the genomics of renewable energy strategies, carbon cycling, environmental gene discovery, and engineering of fuel-producing organisms. The meeting features presentations by leading scientists advancing these topics. Pam Silver of Harvard University gives a presentation on "Designing Biological Systems for Sustainability and Programmed Environmental Interface" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011

  16. Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses

    SciTech Connect (OSTI)

    Yang, Shihui; Pan, Chongle; Tschaplinski, Timothy J; Hurst, Gregory {Greg} B; Engle, Nancy L; Zhou, Wen; Dam, Phuongan; Xu, Ying; Dice, Lezlee T; Davison, Brian H; Brown, Steven D

    2013-01-01

    Zymomonas mobilis ZM4 is a capable ethanogenic bacterium with high ethanol productivity and high level of ethanol tolerance. Previous studies indicated that several stress-related proteins and changes in the ZM4 membrane lipid composition may contribute to ethanol tolerance. However, the molecular mechanisms of ethanol stress response have not been elucidated fully. In this study, ethanol stress responses were investigated using systems biology tools. Medium supplementation with an initial 47.3 g/L (6% v/v) ethanol reduced Z. mobilis ZM4 glucose consumption, growth rate and ethanol productivity compared to that of untreated controls. Metabolomic profiling showed that ethanol-treated ZM4 cells accumulated greater amounts of glycerol during the entire fermentation process, which may indicate an important role for this metabolite. A proteomic analysis of early exponential growth identified about one thousand proteins, or approximately 56% of the predicted ZM4 proteome. Proteins related to metabolism and stress response such as chaperones and key regulators were more abundant in the early ethanol stress condition. Transcriptomic studies indicated the response of ZM4 to ethanol is dynamic, complex and involves many genes from all the different functional categories. There were fewer genes significantly differentially expressed in the exponential phase compared to that of stationary phase and early stationary phase. Most down-regulated genes were related to translation and ribosome biogenesis, while the ethanol-upregulated genes were mostly related to cellular processes and metabolism. Correlations among the transcriptomics, proteomics and metabolism were examined and among significantly expressed genes or proteins, we observe higher correlation coefficients when fold-change values are higher. This systems biology study elucidates key Z. mobilis ZM4 metabolites, genes and proteins that form the foundation of its distinctive physiology and its multifaceted response to ethanol stress.

  17. Biological and Environmental Research Network Requirements

    SciTech Connect (OSTI)

    Balaji, V.; Boden, Tom; Cowley, Dave; Dart, Eli; Dattoria, Vince; Desai, Narayan; Egan, Rob; Foster, Ian; Goldstone, Robin; Gregurick, Susan; Houghton, John; Izaurralde, Cesar; Johnston, Bill; Joseph, Renu; Kleese-van Dam, Kerstin; Lipton, Mary; Monga, Inder; Pritchard, Matt; Rotman, Lauren; Strand, Gary; Stuart, Cory; Tatusova, Tatiana; Tierney, Brian; Thomas, Brian; Williams, Dean N.; Zurawski, Jason

    2013-09-01

    The Energy Sciences Network (ESnet) is the primary provider of network connectivity for the U.S. Department of Energy (DOE) Office of Science (SC), the single largest supporter of basic research in the physical sciences in the United States. In support of SC programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs that it serves. This focus has helped ESnet be a highly successful enabler of scientific discovery for over 25 years. In November 2012, ESnet and the Office of Biological and Environmental Research (BER) of the DOE SC organized a review to characterize the networking requirements of the programs funded by the BER program office. Several key findings resulted from the review. Among them: 1) The scale of data sets available to science collaborations continues to increase exponentially. This has broad impact, both on the network and on the computational and storage systems connected to the network. 2) Many science collaborations require assistance to cope with the systems and network engineering challenges inherent in managing the rapid growth in data scale. 3) Several science domains operate distributed facilities that rely on high-performance networking for success. Key examples illustrated in this report include the Earth System Grid Federation (ESGF) and the Systems Biology Knowledgebase (KBase). This report expands on these points, and addresses others as well. The report contains a findings section as well as the text of the case studies discussed at the review.

  18. Molecular Biology The molecular biology major at Stetson University is designed for

    E-Print Network [OSTI]

    Miles, Will

    Molecular Biology The molecular biology major at Stetson University is designed for students interested in the interface between the life sciences and physical sciences. Molecular biology is an interdisciplinary science that uses the techniques of biology and chemistry to examine genetic inheritance

  19. Science of Earth Systems Offered by the Department of Earth and Atmospheric Sciences

    E-Print Network [OSTI]

    Chen, Tsuhan

    in environmental management and policy, law or medicine, science journalism and K-12 science education. #12;Major, dwindling energy resources, inadequate water supplies, and political strife over strategic minerals a comprehensive understanding of the world as we know it. Students may chose to focus on one of a number

  20. Roadmap: Digital Sciences Digital Systems Management Bachelor of Science DS-BS-DS-DSMT

    E-Print Network [OSTI]

    Khan, Javed I.

    Sciences or Related Area 7 3 Semester Two [15 Credits] ! DSCI 10410 Information Ethics and Social Introduction to Entrepreneurship (3) COMM 41000 Sports Communication (3) GEOG 49070 Geographic Information Science (4) COMM 43000 Communication Technology and Human Interaction (3) GEOG 49076 Spatial Programming

  1. The Encyclopedia of Systems Biology and OMICS (first presentation) and The ISA Infrastructure for Multi-omics Data (second presentation) (GSC8 Meeting)

    SciTech Connect (OSTI)

    Kolker, Eugene; Sansone, Susanna

    2011-09-11

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Eugene Kolker from Seattle Children's Hospital briefly discusses "The Encyclopedia of Systems Biology and OMICS," followed by Susanna Sansone from the EBI on "The ISA Infrastructure for multi-omics data" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 11, 2009.

  2. The Encyclopedia of Systems Biology and OMICS (first presentation) and The ISA Infrastructure for Multi-omics Data (second presentation) (GSC8 Meeting)

    ScienceCinema (OSTI)

    Kolker, Eugene [Seattle Children's Hospital]; Sansone, Susanna [EBI

    2011-04-28

    The Genomic Standards Consortium was formed in September 2005. It is an international, open-membership working body which promotes standardization in the description of genomes and the exchange and integration of genomic data. The 2009 meeting was an activity of a five-year funding "Research Coordination Network" from the National Science Foundation and was organized held at the DOE Joint Genome Institute with organizational support provided by the JGI and by the University of California - San Diego. Eugene Kolker from Seattle Children's Hospital briefly discusses "The Encyclopedia of Systems Biology and OMICS," followed by Susanna Sansone from the EBI on "The ISA Infrastructure for multi-omics data" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 11, 2009.

  3. A View to the FutureBERKELEY LAB 2005/2006 REPORT A Note from the Director / 2 Energy Technologies and Environmental Solutions / 4 Living Systems and Quantitative Biology / 8 Frontiers in Nanoscience / 12 Exploring Matter and Energy in the Universe / 16

    E-Print Network [OSTI]

    Knowles, David William

    A View to the FutureBERKELEY LAB 2005/2006 REPORT #12;A Note from the Director / 2 Energy Technologies and Environmental Solutions / 4 Living Systems and Quantitative Biology / 8 Frontiers in Nanoscience / 12 Exploring Matter and Energy in the Universe / 16 X-Ray and Ultrafast Science / 20 Advanced

  4. Biagioli, Mario, Galileo's System of Patronage , History of Science, 28:1=79 (1990:Mar.) p.1 Biagioli, Mario, Galileo's System of Patronage , History of Science, 28:1=79 (1990:Mar.) p.1

    E-Print Network [OSTI]

    Biagioli, Mario, Galileo's System of Patronage , History of Science, 28:1=79 (1990:Mar.) p.1 #12;Biagioli, Mario, Galileo's System of Patronage , History of Science, 28:1=79 (1990:Mar.) p.1 #12;Biagioli, Mario, Galileo's System of Patronage , History of Science, 28:1=79 (1990:Mar.) p.1 #12;Biagioli, Mario

  5. Computational e-Science Studying complex systems in silico

    E-Print Network [OSTI]

    Bisseling, Rob

    .A. Van der Vorst, A. van Kampen, H. Bal, P. Klint, R.M.M. Mattheij, J. van Wijk, J. Schaye, H Research Issues Resources required Metrics of Success From particle to population: scientific computing in a distributed data environment Impact on science and society: discrete problems Impact on science and society

  6. Biology Mathematics Connection Program Integrating Mathematics and Biology Program

    E-Print Network [OSTI]

    Biology Mathematics Connection Program Integrating Mathematics and Biology Program BMC pioneered a series of instructional modules for use in high school mathematics and biology classrooms to highlight the interconnections between the mathematical and biological sciences. IMB follows up by developing the BMC modules

  7. Partitioning networks into communities by message passing MOE-Microsoft Laboratory for Intelligent Computing and Intelligent Systems,

    E-Print Network [OSTI]

    Nardini, Christine

    for Intelligent Computing and Intelligent Systems, Department of Computer Science and Engineering, Shanghai Jiao and Intelligent Systems, Department of Computer Science and Engineering, Shanghai Jiao Tong University, 800 Dong of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, 320 Yue

  8. Data Mining in Earth System Science (DMESS 2011)

    SciTech Connect (OSTI)

    Hoffman, Forrest M [ORNL] [ORNL; Larson, Jay [Argonne National Laboratory (ANL)] [Argonne National Laboratory (ANL); Mills, Richard T [ORNL] [ORNL; Brooks, Bjorn [ORNL] [ORNL; Ganguly, Auroop R [ORNL] [ORNL; Hargrove, William Walter [ORNL] [ORNL; Huang, Jian [University of Tennessee, Knoxville (UTK)] [University of Tennessee, Knoxville (UTK); Kumar, Jitendra [ORNL] [ORNL; Vatsavai, Raju [ORNL] [ORNL

    2011-01-01

    From field-scale measurements to global climate simulations and remote sensing, the growing body of very large and long time series Earth science data are increasingly difficult to analyze, visualize, and interpret. Data mining, information theoretic, and machine learning techniques - such as cluster analysis, singular value decomposition, block entropy, Fourier and wavelet analysis, phase-space reconstruction, and artificial neural networks - are being applied to problems of segmentation, feature extraction, change detection, model-data comparison, and model validation. The size and complexity of Earth science data exceed the limits of most analysis tools and the capacities of desktop computers. New scalable analysis and visualization tools, running on parallel cluster computers and supercomputers, are required to analyze data of this magnitude. This workshop will demonstrate how data mining techniques are applied in the Earth sciences and describe innovative computer science methods that support analysis and discovery in the Earth sciences.

  9. 6/06/09 BA in General Biology Bachelor of Arts in General Biology

    E-Print Network [OSTI]

    6/06/09 BA in General Biology Bachelor of Arts in General Biology Department of Biology College of Science and Engineering Undergraduate Programs Students majoring in the General Biology degree program are required to complete 57 units in the major. In addition to the biological science courses, it includes

  10. DRAFT Measurement Science for Complex Information Systems http://www.nist.gov/itl/antd/emergent_behavior.cfm

    E-Print Network [OSTI]

    Analysis," Proceedings of the 44th Hawaii Conference on System Sciences, pp.1-10. Kauai, Hawaii, January 4

  11. Bayer Material Science (TRL 1 2 3 System)- River Devices to Recover Energy with Advanced Materials(River DREAM)

    Broader source: Energy.gov [DOE]

    Bayer Material Science (TRL 1 2 3 System) - River Devices to Recover Energy with Advanced Materials(River DREAM)

  12. Quantum Biology

    E-Print Network [OSTI]

    Alessandro Sergi

    2009-07-11

    A critical assessment of the recent developments of molecular biology is presented. The thesis that they do not lead to a conceptual understanding of life and biological systems is defended. Maturana and Varela's concept of autopoiesis is briefly sketched and its logical circularity avoided by postulating the existence of underlying {\\it living processes}, entailing amplification from the microscopic to the macroscopic scale, with increasing complexity in the passage from one scale to the other. Following such a line of thought, the currently accepted model of condensed matter, which is based on electrostatics and short-ranged forces, is criticized. It is suggested that the correct interpretation of quantum dispersion forces (van der Waals, hydrogen bonding, and so on) as quantum coherence effects hints at the necessity of including long-ranged forces (or mechanisms for them) in condensed matter theories of biological processes. Some quantum effects in biology are reviewed and quantum mechanics is acknowledged as conceptually important to biology since without it most (if not all) of the biological structures and signalling processes would not even exist. Moreover, it is suggested that long-range quantum coherent dynamics, including electron polarization, may be invoked to explain signal amplification process in biological systems in general.

  13. Environmental Science, Policy, and Undergraduate Handbook

    E-Print Network [OSTI]

    Environmental Science, Policy, and Management Undergraduate Handbook 2008-2009 MOLECULAR ENVIRONMENTAL BIOLOGY A BIOLOGICAL SCIENCES MAJOR Department of Environmental Science, Policy, and Management/01/08 #12;2 Environmental Science, Policy, and Management Undergraduate Affairs CONTACT INFORMATION Walk

  14. A case for Sandia investment in complex adaptive systems science and technology.

    SciTech Connect (OSTI)

    Colbaugh, Richard; Tsao, Jeffrey Yeenien; Johnson, Curtis Martin; Backus, George A.; Brown, Theresa Jean; Jones, Katherine A.

    2012-05-01

    This white paper makes a case for Sandia National Laboratories investments in complex adaptive systems science and technology (S&T) -- investments that could enable higher-value-added and more-robustly-engineered solutions to challenges of importance to Sandia's national security mission and to the nation. Complex adaptive systems are ubiquitous in Sandia's national security mission areas. We often ignore the adaptive complexity of these systems by narrowing our 'aperture of concern' to systems or subsystems with a limited range of function exposed to a limited range of environments over limited periods of time. But by widening our aperture of concern we could increase our impact considerably. To do so, the science and technology of complex adaptive systems must mature considerably. Despite an explosion of interest outside of Sandia, however, that science and technology is still in its youth. What has been missing is contact with real (rather than model) systems and real domain-area detail. With its center-of-gravity as an engineering laboratory, Sandia's has made considerable progress applying existing science and technology to real complex adaptive systems. It has focused much less, however, on advancing the science and technology itself. But its close contact with real systems and real domain-area detail represents a powerful strength with which to help complex adaptive systems science and technology mature. Sandia is thus both a prime beneficiary of, as well as potentially a prime contributor to, complex adaptive systems science and technology. Building a productive program in complex adaptive systems science and technology at Sandia will not be trivial, but a credible path can be envisioned: in the short run, continue to apply existing science and technology to real domain-area complex adaptive systems; in the medium run, jump-start the creation of new science and technology capability through Sandia's Laboratory Directed Research and Development program; and in the long run, inculcate an awareness at the Department of Energy of the importance of supporting complex adaptive systems science through its Office of Science.

  15. Postdoc position: Hybrid Systems Theorem Proving Carnegie Mellon University, Computer Science Department

    E-Print Network [OSTI]

    Sandholm, Tuomas W.

    Postdoc position: Hybrid Systems Theorem Proving Carnegie Mellon University, Computer Science is to develop next-generation verification techniques for cyber- physical systems and hybrid systems. Our prover KeYmaera and have found application in the verification of cars, aircraft, railway systems

  16. Efficiency, Robustness and Stochasticity of Gene Regulatory Networks in Systems Biology: lambda Switch as a Working Example

    E-Print Network [OSTI]

    X. Zhu; L. Yin; L. Hood; D. Galas; P. Ao

    2006-02-09

    Phage lambda is one of the most studied biological models in modern molecular biology. Over the past 50 years quantitative experimental knowledge on this biological model has been accumulated at all levels: physics, chemistry, genomics, proteomics, functions, and more. All its components have been known to a great detail. The theoretical task has been to integrate its components to make the organism working quantitatively in a harmonic manner. This would test our biological understanding and would lay a solid fundamental for further explorations and applications, an obvious goal of systems biology. One of the outstanding challenges in doing so has been the so-called stability puzzle of lambda switch: the biologically observed robustness and its difficult mathematical reconstruction based on known experimental values. In this chapter we review the recent theoretical and experimental efforts on tackling this problem. An emphasis is put on the minimum quantitative modeling where a successful numerical agreement between experiments and modeling has been achieved. A novel method tentatively named stochastic dynamical structure analysis emerged from such study is also discussed within a broad modeling perspective.

  17. A Comprehensive Collection of Systems Biology Data Characterizing the Host Response to Viral Infection

    SciTech Connect (OSTI)

    Aevermann, Brian; Pickett, Brett E.; Kumar, Sanjeev; Klem, Edward B.; Agnihothram, Sudhakar; Askovich, Peter S.; Bankhead, Armand; Bolles, Meagan; Carter, Victoria; Chang, Jean H.; Clauss, Therese RW; Dash, Pradyot; Diercks, Alan H.; Eisfeld, Amie J.; Ellis, Amy L.; Fan, Shufang; Ferris, Martin T.; Gralinski, Lisa; Green, Richard; Gritsenko, Marina A.; Hatta, Masato; Heegel, Robert A.; Jacobs, Jon M.; Jeng, Sophia; Josset, Laurence; Kaiser, Shari M.; Kelly, Sarah; Law, Gale L.; Li, Chengjun; Li, Jiangning; Long, Casey; Luna, Maria L.; Matzke, Melissa M.; McDermott, Jason E.; Menachery, Vineet; Metz, Thomas O.; Mitchell, Hugh D.; Monroe, Matthew E.; Navarro, Garnet; Neumann, Gabriele; Podyminogin, Rebecca L.; Purvine, Samuel O.; Rosenberger, Carrie; Sanders, Catherine J.; Schepmoes, Athena A.; Shukla, Anil K.; Sims, Amy; Sova, Pavel; Tam, Vincent C.; Tchitchek, Nicholas; Thomas, Paul G.; Tilton, Susan C.; Totura, Allison L.; Wang, Jing; Webb-Robertson, Bobbie-Jo M.; Wen, Ji; Weiss, Jeffrey M.; Yang, Feng; Yount, Boyd; Zhang, Qibin; Mcweeney, Shannon K.; Smith, Richard D.; Waters, Katrina M.; Kawaoka, Yoshihiro; Baric, Ralph; Aderem, Alan; Katze, Michael G.; Scheuermann, Richard H.

    2014-10-14

    The Systems Biology for Infectious Diseases Research program was established by the U.S. National Institute of Allergy and Infectious Diseases to investigate host-pathogen interactions at a systems level. This program generated 47 transcriptomic and proteomic datasets from 30 studies that investigate in vivo and in vitro host responses to viral infections. Human pathogens in the Orthomyxoviridae and Coronaviridae families, especially pandemic H1N1 and avian H5N1 influenza A viruses and severe acute respiratory syndrome coronavirus (SARS-CoV), were investigated. Study validation was demonstrated via experimental quality control measures and meta-analysis of independent experiments performed under similar conditions. Primary assay results are archived at the GEO and PeptideAtlas public repositories, while processed statistical results together with standardized metadata are publically available at the Influenza Research Database (www.fludb.org) and the Virus Pathogen Resource (www.viprbrc.org). By comparing data from mutant versus wild-type virus and host strains, RNA versus protein differential expression, and infection with genetically similar strains, these data can be used to further investigate genetic and physiological determinants of host responses to viral infection.

  18. A comprehensive collection of systems biology data characterizing the host response to viral infection

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Aevermann, Brian D.; Pickett, Brett E.; Kumar, Sanjeev; Klem, Edward B.; Agnihothram, Sudhakar; Askovich, Peter S.; Bankhead, Armand; Bolles, Meagan; Carter, Victoria; Chang, Jean H.; et al

    2014-10-14

    The Systems Biology for Infectious Diseases Research program was established by the U.S. National Institute of Allergy and Infectious Diseases to investigate host-pathogen interactions at a systems level. This program generated 47 transcriptomic and proteomic datasets from 30 studies that investigate in vivo and in vitro host responses to viral infections. Human pathogens in the Orthomyxoviridae and Coronaviridae families, especially pandemic H1N1 and avian H5N1 influenza A viruses and severe acute respiratory syndrome coronavirus (SARS-CoV), were investigated. Study validation was demonstrated via experimental quality control measures and meta-analysis of independent experiments performed under similar conditions. Primary assay results are archivedmore »at the GEO and PeptideAtlas public repositories, while processed statistical results together with standardized metadata are publically available at the Influenza Research Database (www.fludb.org) and the Virus Pathogen Resource (www.viprbrc.org). As a result, by comparing data from mutant versus wild-type virus and host strains, RNA versus protein differential expression, and infection with genetically similar strains, these data can be used to further investigate genetic and physiological determinants of host responses to viral infection.« less

  19. A comprehensive collection of systems biology data characterizing the host response to viral infection

    SciTech Connect (OSTI)

    Aevermann, Brian D.; Pickett, Brett E.; Kumar, Sanjeev; Klem, Edward B.; Agnihothram, Sudhakar; Askovich, Peter S.; Bankhead, Armand; Bolles, Meagan; Carter, Victoria; Chang, Jean H.; Clauss, Therese R. W.; Dash, Pradyot; Diercks, Alan H.; Eisfeld, Amie J.; Ellis, Amy L.; Fan, Shufang; Ferris, Martin T.; Gralinski, Lisa; Green, Richard; Gritsenko, Marina A.; Hatta, Masato; Heegel, Robert A.; Jacobs, Jon M.; Jeng, Sophia; Josset, Laurence; Kaiser, Shari M.; Kelly, Sarah; Law, Gale Lynn; Li, Chengjun; Li, Jiangning; Long, Casey; Luna, Maria L.; Matzke, Melissa M.; McDermott, Jason E.; Menachery, Vineet; Metz, Thomas O.; Mitchell, Hugh D.; Monroe, Matthew E.; Navarro, Garnet; Neumann, Gabriele; Podyminogin, Rebecca L.; Purvine, Samuel O.; Rosenberger, Carrie; Sanders, Catherine J.; Schepmoes, Athena A.; Shukla, Anil K.; Sims, Amy; Sova, Pavel; Tam, Vincent C.; Tchitchek, Nicholas; Thomas, Paul G.; Tilton, Susan C.; Totura, Allison L.; Wang, Jing; Webb-Robertson, Bobbie-Jo M.; Wen, Ji; Weiss, Jeffrey M.; Yang, Feng; Yount, Boyd; Zhang, Qibin; Mcweeney, Shannon K.; Smith, Richard D.; Waters, Katrina M.; Kawaoka, Yoshihiro; Baric, Ralph; Aderem, Alan; Katze, Michael G.; Scheuermann, Richard H.

    2014-10-14

    The Systems Biology for Infectious Diseases Research program was established by the U.S. National Institute of Allergy and Infectious Diseases to investigate host-pathogen interactions at a systems level. This program generated 47 transcriptomic and proteomic datasets from 30 studies that investigate in vivo and in vitro host responses to viral infections. Human pathogens in the Orthomyxoviridae and Coronaviridae families, especially pandemic H1N1 and avian H5N1 influenza A viruses and severe acute respiratory syndrome coronavirus (SARS-CoV), were investigated. Study validation was demonstrated via experimental quality control measures and meta-analysis of independent experiments performed under similar conditions. Primary assay results are archived at the GEO and PeptideAtlas public repositories, while processed statistical results together with standardized metadata are publically available at the Influenza Research Database (www.fludb.org) and the Virus Pathogen Resource (www.viprbrc.org). As a result, by comparing data from mutant versus wild-type virus and host strains, RNA versus protein differential expression, and infection with genetically similar strains, these data can be used to further investigate genetic and physiological determinants of host responses to viral infection.

  20. Extracting information from biological networks

    E-Print Network [OSTI]

    Chindelevitch, Leonid Alexandrovich

    2010-01-01

    Systems biology, the study of biological systems in a holistic manner, has been catalyzed by a dramatic improvement in experimental techniques, coupled with a constantly increasing availability of biological data. The ...

  1. Frontline Earth Science Research @ St Andrews The Rise of the Earth System

    E-Print Network [OSTI]

    Brierley, Andrew

    1 Frontline Earth Science Research @ St Andrews The Rise of the Earth System: A Tale of Ice, Oxygen Department of Earth and Environmental Sciences, may I extend a very warm welcome to you at this half-day symposium. This is the third such event we have hosted; the first, Insights into Earth Processes from

  2. Security Science & Technology | Nuclear Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Security Treaty Verification Nuclear Systems Modeling, Simulation & Validation Nuclear Systems Technology Reactor Technology Nuclear Science Home | Science & Discovery |...

  3. Science

    E-Print Network [OSTI]

    Department of Mathematics, Statistics, and Computer Science, University of Illinois. at Chicago, Chicago, IL, 60607, USA. 2 Department of Mathematics, Purdue ...

  4. Model-driven metabolic engineering of Escherichia coli : a systems biology approach

    E-Print Network [OSTI]

    Feist, Adam Michael

    2008-01-01

    discovery 36 and for understanding of complex biological processes. Predictive modelsModel-aided gap-filling and discovery will aid in this process (

  5. Integrated Omics in Systems Biology: The New Frontier for Environmental Biotechnology

    E-Print Network [OSTI]

    Hazen, Terry C.

    2008-01-01

    biology Comparative Genomics Metabolomics DNA Microarraysand Environmental Research, Genomics Program:GTL throughINSTITUTE FOR ENVIRONMENTAL GENOMICS UNIVERSITY OF OKLAHOMA

  6. future science group 9ISSN 1759-726910.4155/BFS.11.151 2012 Future Science Ltd Synthetic biology approaches to biofuel production

    E-Print Network [OSTI]

    Hasty, Jeff

    approaches to biofuel production Editorial Biofuels (2012) 3(1), 9­12 "...it is important for synthetic will focus on the use of synthetic biology to engineer organisms for the more efficient production of biofuel over the current production level of about 13 billion gallons [1]. Given the expanding mar- ket

  7. Contributions to the Theory of Thermostated Systems II: Least Dissipation of Helmholtz Free Energy in Nano-Biology

    E-Print Network [OSTI]

    Ronald F. Fox

    2015-03-12

    In this paper, we develop further the theory of thermostated systems along the lines of our earlier paper. Two results are highlighted: 1) in the Markov limit of the contracted description, a least dissipation of Helmholtz free energy principle is established; and 2) a detailed account of the appropriateness of this principle for nano-biology, including the evolution of life, is presented.

  8. Biological and Environmental Research: Climate and Environmental Sciences Division: U.S./European Workshop on Climate Change Challenges and Observations

    SciTech Connect (OSTI)

    Mather, James; McCord, Raymond; Sisterson, Doug; Voyles, Jimmy

    2012-11-08

    The workshop aimed to identify outstanding climate change science questions and the observational strategies for addressing them. The scientific focus was clouds, aerosols, and precipitation, and the required ground- and aerial-based observations. The workshop findings will be useful input for setting priorities within the Department of Energy (DOE) and the participating European centers. This joint workshop was envisioned as the first step in enhancing the collaboration among these climate research activities needed to better serve the science community.

  9. Marine Biology

    E-Print Network [OSTI]

    Zaffino, Kyle

    2013-01-01

    this  door. ”   Marine  Biology   I  joined  the  military  RIVERSIDE   Marine  Biology   A Thesis submitted in partialBiology                                                                                                                        

  10. Presented at the 34th Annual Hawaii Conference on Systems Sciences, January 3-6 ,2001

    E-Print Network [OSTI]

    Presented at the 34th Annual Hawaii Conference on Systems Sciences, January 3-6 ,2001 "Electricity markets include 0-7695-0981-9/01 $10.00 (c) 2001 IEEE 1 Proceedings of the 34th Hawaii International

  11. Graduate School of Creative Science and Engineering Department of Industrial and Management Systems Engineering

    E-Print Network [OSTI]

    Kaji, Hajime

    , Lean/Agile Manufacturing Technology, Productivity Performance Improvement Technology, TPM, JIT Department of Industrial and Management Systems Engineering Research Instruction Application Code Name) Japan Advanced Institute of Science and Technology(2002) KISHI Tomoji Professor Doctor

  12. BIOLOGICAL ENGINEERING Program of Study

    E-Print Network [OSTI]

    Thomas, Andrew

    The Master of Science in Biological Engineering prepares students to conduct research involving Professor. Conformation of interfacial species, surface spectroscopies/microscopies, binary polymer Sciences. Composites, coating layer mechanical properties. Barbara J. W. Cole, Ph.D. (Washington, 1986

  13. System and method for preconcentrating, identifying, and quantifying chemical and biological substances

    DOE Patents [OSTI]

    Yu, Conrad M. (Antioch, CA); Koo, Jackson C. (San Ramon, CA)

    2000-01-01

    A system and method for preconcentrating, identifying, and quantifying chemical and biological substances is disclosed. An input valve directs a first volume of a sample gas to a surface acoustic wave (SAW) device. The SAW device preconcentrates and detects a mass of a substance within the sample gas. An output valve receives a second volume of the sample gas containing the preconcentrated substance from the SAW device and directs the second volume to a gas chromatograph (GC). The GC identifies the preconcentrated substance within the sample gas. A shunt valve exhausts a volume of the sample gas equal to the first volume minus the second volume away from the SAW device and the GC. The method of the present invention includes the steps of opening an input valve for passing a first volume of a sample gas to a SAW device; preconcentrating and detecting a mass of a substance within the sample gas using the SAW device; opening an output valve for passing a second volume of the sample gas containing the preconcentrated substance to a gas chromatograph (GC); and then identifying the preconcentrated substance within the sample gas using the GC.

  14. BRICSLS-97-1Chomicki&Toman:TemporalLogicinInformationSystems BRICSBasic Research in Computer Science

    E-Print Network [OSTI]

    Toman, David

    BRICSLS-97-1Chomicki&Toman:TemporalLogicinInformationSystems BRICSBasic Research in Computer Science Temporal Logic in Information Systems Jan Chomicki David Toman BRICS Lecture Series LS-97-1 ISSN/1/ #12;Temporal Logic in Information Systems Jan Chomicki David Toman #12;#12;Jan Chomicki Dept

  15. ROSANN WEBB COLLINS Associate Professor, Department of Information Systems and Decision Sciences

    E-Print Network [OSTI]

    Jank, Wolfgang

    ROSANN WEBB COLLINS Associate Professor, Department of Information Systems and Decision Sciences-7800 ______________________________________________________________________________ EDUCATION Ph.D. 1993 University of Minnesota, Management Information Systems, Carlson School of Management M Carolina at Greensboro, Bachelor of Fine Arts CURRENT RESEARCH INTERESTS Global Information Systems: Focus

  16. School of Mechanical Engineering and Computer Science Mech 348: Dynamic Systems and Control

    E-Print Network [OSTI]

    , including mechanical, electrical, fluid, and thermal systems. Fundamentals of vibration analysis, controlSchool of Mechanical Engineering and Computer Science Mech 348: Dynamic Systems and Control Catalog mechanical, electrical, thermal and fluid engineering systems 3. To introduce students to the analysis

  17. www.emsl.pnnl.gov New Decade, New Tools, New Science: SyStemS biology

    E-Print Network [OSTI]

    , including high-throughput genomics, transcriptomics, proteomics, and metabolomics analyses as well as high

  18. NATIONAL CENTRE FOR BIOLOGICAL SCIENCES Annual Maintenance Contract for Electrical Systems in

    E-Print Network [OSTI]

    Udgaonkar, Jayant B.

    substations in NCBS Campus, GKVK Bangalore. 2. ESTIMATE VALUE PUT TO TENDER : Rs.62.29 Lakhs 3. EARNEST MONEY DEPOSIT : Rs.1,24,582.00 4. COST OF TENDER DOCUMENT : Rs. 500/- 5. SALE PERIOD : 12/12/2013 TO 20:________________DATE:____________ __________________________________ FOR A SUM OF RS. ________________ TOWARDS __________________________________THE COST OF TENDER DOCUMENT

  19. Protein-Folding Landscapes in Multi-Chain Systems Major Classification: Biological Sciences

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefield MunicipalTechnical Report:Speeding accessby aLEDSpeeding accessSpeedingPATENTS-Protein-Folding

  20. Roadmap: Digital Sciences Digital Systems Interaction Bachelor of Science DS-BS-DS-DSIN

    E-Print Network [OSTI]

    Khan, Javed I.

    Information Science (4) COMM 43000 Communication Technology and Human Interaction (3) GEOG 49076 Spatial Core Requirement 3 Semester Two [15 Credits] ! DSCI 10410 Information Ethics and Social Responsibility Programming 3 DSCI 23410 Cognition in Technology 1 3 VCD 14001 Visual Design Literacy 3 Kent Core

  1. Research News | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    sciences, primarily in physics but also including subject areas such as chemistry, biology and life sciences, materials science, nuclear sciences and engineering, energy...

  2. B.S. Biochemistry Planning Worksheet. Updated March 2010 Bachelor of Science Biochemistry and Molecular Biology Requirements (BIOC)

    E-Print Network [OSTI]

    Adali, Tulay

    B.S. Biochemistry Planning Worksheet. Updated March 2010 Bachelor of Science ­ Biochemistry ­ Organic Chemistry Lab I* CHEM 351; 352 (pre-/co-req) 2 FS Biochemistry (12 credits; all upper-level) CHEM 437 ­ Comprehensive Biochemistry I* CHEM 352 4 F CHEM 437L ­Biochemistry Laboratory* CHEM 300; CHEM

  3. B.S. Biochemistry Planning Worksheet. Updated 09/06 Bachelor of Science Biochemistry and Molecular Biology Requirements (BIOC)

    E-Print Network [OSTI]

    Adali, Tulay

    B.S. Biochemistry Planning Worksheet. Updated 09/06 Bachelor of Science Biochemistry and Molecular Biochemistry (12 credits; all upper-level) CHEM 437 Comprehensive Biochem I* BIOL 100, CHEM 352 4 F CHEM 437L Biochemistry Laboratory* CHEM 352L; 437 (pre- or co-req) 4 FS CHEM 438 Comprehensive Biochem II* CHEM 437 4

  4. Nanoparticle systems that exploit host biology for diagnosis and treatment of disease

    E-Print Network [OSTI]

    Lin, Kevin (Kevin Yu-Ming)

    2014-01-01

    Over the past 30 years, advances in nanotechnology have generated a multitude of nanostructures exhibiting a breadth of physical, chemical, and biological properties that have tremendous potential to improve the detection ...

  5. Experimental nonlinear laser systems: Bigger data for better science?

    SciTech Connect (OSTI)

    Kane, D. M.; Toomey, J. P.; McMahon, C.; Noblet, Y.; Argyris, A.; Syvridis, D.

    2014-10-06

    Bigger data is supporting knowledge discovery in nonlinear laser systems as will be demonstrated with examples from three semiconductor laser based systems – one with optical feedback, a photonic integrated circuit (PIC) chaotic laser and a frequency shifted feedback laser system.

  6. Development and evaluation of a lignite-stillage carrier system for application and study of biological control agents 

    E-Print Network [OSTI]

    Jones, Richard Worth

    1983-01-01

    Approved as to style and content by: (Chairman of Committee) (Member) (Member) (Head of Department) December 1983 ABSTRACT Development and Evaluation of a Lignite-Sti liege Carrier System for Application and Study of Biological Agents. (December 1983.... The carrier system consisted of lignite granules amended with thin liquid sti llage. This carrier system supported fungal propagule production as high as 2. 0 x 10g propagules/g carrier. Thin liquid sti llage supported the production of 4. 0-4. 5 mg of g...

  7. Fusion Nuclear Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Fusion Nuclear Science Isotope Development and Production Nuclear Security Science & Technology Nuclear Systems Modeling, Simulation & Validation Nuclear Systems Technology...

  8. 2003 Synthetic Biology study

    E-Print Network [OSTI]

    Endy, Drew

    2007-08-14

    Biology is a technology for processing information, materials, and energy. As a technology platform, biological systems provide access to artifacts and processes across a range of scales (e.g., the ribosome is a programmable ...

  9. ASSOCIATE OF SCIENCE DEGREE IN INFORMATION SYSTEMS (Suggested 2 Year Plan)

    E-Print Network [OSTI]

    Benos, Panayiotis "Takis"

    CREDITS FIRST YEAR, 2ND TERM CREDITS ENG 0101 English Composition I 3 ENG 0102 English Composition II 3 Per Academic Year 31 SECOND YEAR, 1ST TERM CREDITS SECOND YEAR, 2ND TERM CREDITS CIST 0262 SystemsASSOCIATE OF SCIENCE DEGREE IN INFORMATION SYSTEMS (Suggested 2 Year Plan) FIRST YEAR, 1ST TERM

  10. Minor in Science of Natural and Environmental Systems DESCRIPTION OF THE MINOR

    E-Print Network [OSTI]

    Chen, Tsuhan

    : BIOEE 1610: Ecology and the Environment (3 credits)* 2. Earth Systems: CSS 3650: Environmental Chemistry* ______ ___________ CSS 3650: Environmental Chemistry* ______ ___________ AEM 2500: Environmental and Resource EconomicsMinor in Science of Natural and Environmental Systems DESCRIPTION OF THE MINOR The Minor Program

  11. Roadmap: Integrated Health Studies Health Care Administration and Systems -Bachelor of Science

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Integrated Health Studies ­ Health Care Administration and Systems - Bachelor of Science Year: 2012­2013 Page 1 of 2 | Last Updated: 7-Nov-12/JS This roadmap is a recommended semester if not satisfied earlier #12;Roadmap: Integrated Health Studies ­ Health Care Administration and Systems - Bachelor

  12. Journal of Manufacturing Systems 26 (2007) 116134 Contents lists available at ScienceDirect

    E-Print Network [OSTI]

    Paschalidis, Ioannis "Yannis"

    2007-01-01

    , zero in-process inventory, lean manufacturing, and so on). Finally, supplier­consumer informationJournal of Manufacturing Systems 26 (2007) 116­134 Contents lists available at ScienceDirect Journal of Manufacturing Systems journal homepage: www.elsevier.com/locate/jmansys Technical paper

  13. Cloud Computing and Distributed Systems Laboratory DEPT. OF COMPUTER SCIENCE AND SOFTWARE ENGINEERING

    E-Print Network [OSTI]

    Melbourne, University of

    Cloud Computing and Distributed Systems Laboratory DEPT. OF COMPUTER SCIENCE AND SOFTWARE ENGINEERING THE UNIVERSITY OF MELBOURNE, AUSTRALIA The Cloud Computing and Distributed Systems (CLOUDS in 2008 by the CLOUDS lab at the University of Melbourne, facilitates the realization of the above vision

  14. Biology 472 Spring 2009 Biology of Amphibians and Reptiles

    E-Print Network [OSTI]

    Jackson, Kate

    Biology 472 Spring 2009 1 Biology of Amphibians and Reptiles Dr. Kate Jackson Office: Science 200 E Encyclopedia of Reptiles and Amphibians. Oxford University Press. (2) Stebbins, R. and R. T. Peterson. 2003 of assorted herps (from labs). #12;Biology 472 Spring 2009 2 · ...know how to access primary sources

  15. 245V.S.F.T. Merckx (ed.), Mycoheterotrophy: The Biology of Plants Living on Fungi, DOI 10.1007/978-1-4614-5209-6_6, Springer Science+Business Media New York 2013

    E-Print Network [OSTI]

    Taylor, Lee

    245V.S.F.T. Merckx (ed.), Mycoheterotrophy: The Biology of Plants Living on Fungi, DOI 10.1007/978-1-4614-5209-6_6, © Springer Science+Business Media New York 2013 6.1 Introduction Mycoheterotrophic plants provide fascinating of mycoheterotrophic plants always target different fungal clades (Taylor and Bruns 1999;BidartondoandBruns2001

  16. NARSTO Quality Systems Science Center 2004-2005 Annual Report

    E-Print Network [OSTI]

    Laboratory (ORNL). ORNL is managed by UT-Battelle, LLC, for the U.S. Department of Energy under contract DE Management System and Software Configuration Control Guidelines DM-20 Managing Electronic and Hardcopy Format Project Records DM-19 Day-to-Day Operation of Data Management Systems DM-18 > Data Systems Management

  17. Hawaii International Conference on Systems Sciences, January 2002, Hawaii. IEEE Growth and Propagation of Disturbances in a Communication Network Model

    E-Print Network [OSTI]

    Newman, David

    . Therefore, network vulnerability is a major hazard. Analysis of communications system traffic suggests and to characteristics of real Internet data. 1. Introduction Complex systems such as, communication networksHawaii International Conference on Systems Sciences, January 2002, Hawaii. © IEEE Growth

  18. TIFR Centre for Interdisciplinary Sciences, Narsingi, Hyderabad 500075

    E-Print Network [OSTI]

    Shyamasundar, R.K.

    -resolution crystallographic studies on organic small and biological macromolecular systems Dr. Parthapratim Munshi Neutron Scattering Science Directorate, Biology and Soft Mater Division Oak Ridge National Laboratory, Oak Ridge, TN with complementary neutron diffraction technique, when both performed at high-resolution. While neutron diffraction

  19. Neutron Science Research Areas | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Home | Science & Discovery | Neutron Science | Research Areas SHARE Research Areas Neutron scattering research at ORNL covers four broad research areas: biology and soft...

  20. Lechowicz, M.J., 2001. Phenology. In the Encyclopedia of Global Environmental Change, Volume 2. The Earth System:biological and ecological dimensions of global environmental

    E-Print Network [OSTI]

    Lechowicz, Martin J.

    Lechowicz, M.J., 2001. Phenology. In the Encyclopedia of Global Environmental Change, Volume 2. The Earth System:biological and ecological dimensions of global environmental change. Wiley, London. Phenology Martin J. Lechowicz Department of Biology McGill University Montréal, Québec, CANADA Phenology

  1. Collaborative Research: Focusing Attention to Improve the Performance of Citizen Science Systems -Beautiful Images and Perceptive Observers

    E-Print Network [OSTI]

    Crowston, Kevin

    Collaborative Research: Focusing Attention to Improve the Performance of Citizen Science Systems unable to replicate the successes of human pattern recognition. The growth of citizen science on the web-computational citizen science platform that combines the efforts of human classifiers with those of computational

  2. Intercomparison of mesoscale meteorological models for precipitation forecasting Hydrology and Earth System Sciences, 7(6), 799811 (2003) EGU

    E-Print Network [OSTI]

    Boyer, Edmond

    2003-01-01

    Intercomparison of mesoscale meteorological models for precipitation forecasting 799 Hydrology and Earth System Sciences, 7(6), 799811 (2003) © EGU Intercomparison of mesoscale meteorological models

  3. Behavioral Sciences | ornl.gov

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Chemistry Computational Engineering Computer Science Data Earth Sciences Energy Science Future Technology Knowledge Discovery Materials Mathematics National Security Systems...

  4. Research Areas | Nuclear Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Fuel Cycle Science & Technology Fusion Nuclear Science Isotope Development and Production Nuclear Security Science & Technology Nuclear Systems Modeling, Simulation & Validation...

  5. Earth and Atmospheric Sciences | More Science | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Earth and Atmospheric Sciences Nuclear Forensics Climate & Environment Sensors and Measurements Chemical & Engineering Materials Computational Earth Science Systems Modeling...

  6. Call for Papers Elsevier Journal of Computer and System Sciences

    E-Print Network [OSTI]

    Chu, Xiaowen

    at the 14th IEEE International Conference on High Performance Computing and Communications (HPCC-2012 and an ever-increasing demand for practice of high performance computing systems, due to the rapid growth in computing and communications technology. High performance computing systems has moved into the mainstream

  7. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservation ofAlbuquerque| Stanford SynchrotronVideo-Contest Sign In AboutBiological and

  8. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home RoomPreservation ofAlbuquerque| Stanford SynchrotronVideo-Contest Sign In AboutBiological

  9. A Biological Global Positioning System: Considerations for Tracking Stem Cell Behaviors in the Whole Body

    E-Print Network [OSTI]

    Li, Shengwen Calvin; Tachiki, Lisa May; Luo, Jane; Dethlefs, Brent A.; Chen, Zhongping; Loudon, William G.

    2010-01-01

    human airway using a microelectromechanical system endoscopethree- dimensional microelectromechanical endoscopic sweptof a rotational microelectromechanical system probe. Optics

  10. Biology BS, Environmental Biology Emphasis, 2015-2016 Name ID# Date

    E-Print Network [OSTI]

    Barrash, Warren

    Biology BS, Environmental Biology Emphasis, 2015-2016 Name ID# Date Course Number and Title Credits 170 4 DLN BIOL 191 General Biology I 4 DLN CHEM 111, 111L General Chemistry I with Lab 4 DLV Visual Sciences course in a second field 3 BIOL 192 General Biology II 4 BIOL 301 Cell Biology 3 CID BIOL 323

  11. Biology BS, Human Biology Emphasis, 2015-2016 Name ID# Date

    E-Print Network [OSTI]

    Barrash, Warren

    Biology BS, Human Biology Emphasis, 2015-2016 Name ID# Date Course Number and Title Credits 170 4 DLN BIOL 191 General Biology I 4 DLN CHEM 111, 111L General Chemistry I with Lab 4 DLV Visual Sciences course in a second field 3 BIOL 192 General Biology II 4 BIOL 301 Cell Biology 3 CID BIOL 323

  12. Self-optimizing control: From key performance indicators to control of biological systems 1

    E-Print Network [OSTI]

    Skogestad, Sigurd

    Introduction The national economy, the goverment, companies and businesses, consumers, chemical process plants cost function (performance index) Ą§¦ which is to be minimized with respect to the available degrees SKOGESTAD Dept. of Chemical Engineering, Norwegian University of Science and Technology, N­7491 Trondheim

  13. Selfoptimizing control: From key performance indicators to control of biological systems 1

    E-Print Network [OSTI]

    Skogestad, Sigurd

    Introduction The national economy, the goverment, companies and businesses, consumers, chemical process plants cost function (performance index) J o which is to be minimized with respect to the available degrees SKOGESTAD Dept. of Chemical Engineering, Norwegian University of Science and Technology, N--7491 Trondheim

  14. 312 BioScience April 2011 / Vol. 61 No. 4 www.biosciencemag.org Should Biological Invasions Be

    E-Print Network [OSTI]

    Ricciardi, Anthony

    of invasions--like that of natural disasters--requires international coordination of early-warning systems). These definitions are typically used to describe a physical event, such as an earthquake, tsunami, or a flood; more

  15. Science

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail.Theory ofDidDevelopment Top LDRDUniversitySchedules Print Current Science

  16. An EBIS system for rare isotope science project in Korea

    SciTech Connect (OSTI)

    Kim, Jongwon E-mail: jehan@ibs.re.kr E-mail: khyi@ibs.re.kr; Han, Jae-Eun E-mail: jehan@ibs.re.kr E-mail: khyi@ibs.re.kr; Son, Hyock-Jun E-mail: jehan@ibs.re.kr E-mail: khyi@ibs.re.kr; Yi, Kun-Hui E-mail: jehan@ibs.re.kr E-mail: khyi@ibs.re.kr; Zhao, Liangji E-mail: kim@far-tech.com; Kim, Jin-Soo E-mail: kim@far-tech.com

    2015-01-09

    An EBIS system has been designed to be used as a charge breeder for the post accelerator of an ISOL system. An electron gun, which is designed to produce a maximum current of 3 A at the beam energy of 20 kV, will be acquired from the Budker Institute, Novosibirsk. Electron beam optics calculations of the EBIS system as well as of the gun assembly have been performed using PBGUNS and TRAK. A superconducting solenoid with a maximum field of 6 T is to be used to compress the electron beam. A test stand, which includes the gun assembly and a high-power electron beam collector, is being designed and will be ready for the gun test in the end of this year. Charge breeding simulation using EBIS0D and CBSIM has been performed for a few key isotopes.

  17. April 2013 Most Viewed Documents for Biology And Medicine | OSTI...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    April 2013 Most Viewed Documents for Biology And Medicine Science Subject Feed Publications in biomedical and environmental sciences programs, 1981 Moody, J.B. (comp.) (1982) 306...

  18. Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Uervirojnangkoorn, Monarin; Zeldin, Oliver B.; Lyubimov, Artem Y.; Hattne, Johan; Brewster, Aaron S.; Sauter, Nicholas K.; Brunger, Axel T.; Weis, William I.

    2015-03-17

    There is considerable potential for X-ray free electron lasers (XFELs) to enable determination of macromolecular crystal structures that are difficult to solve using current synchrotron sources. Prior XFEL studies often involved the collection of thousands to millions of diffraction images, in part due to limitations of data processing methods. We implemented a data processing system based on classical post-refinement techniques, adapted to specific properties of XFEL diffraction data. When applied to XFEL data from three different proteins collected using various sample delivery systems and XFEL beam parameters, our method improved the quality of the diffraction data as well as themore »resulting refined atomic models and electron density maps. Moreover, the number of observations for a reflection necessary to assemble an accurate data set could be reduced to a few observations. These developments will help expand the applicability of XFEL crystallography to challenging biological systems, including cases where sample is limited.« less

  19. School of Library and Information Science, Indiana University Bloomington Comparing Classification Systems using Facets

    E-Print Network [OSTI]

    Priss, Uta

    Uta Priss School of Library and Information Science, Indiana University Bloomington Comparing concept analysis and are used as 'ground' on which the underlying conceptual facets of a classification retrieval systems. #12;2. Methodology: Formal Concept Analysis and Facets Formal concept analysis (Ganter

  20. Graduate School of Life Science and Systems Engineering School of Engineering

    E-Print Network [OSTI]

    Kourai, Kenichi

    4 5 Graduate School of Life Science and Systems Engineering 1st Year School of Engineering Department of Mechanical and Control Engineering 2nd Year 3rd Year 4th Year 1st Year of Master's Program 1st to higher education Mechanical Engineering Course Space Engineering Course Control Engineering Course

  1. Int. J. Complex Systems in Science vol. 1(2) (2011), pp. 202208

    E-Print Network [OSTI]

    Diaz-Guilera, Albert

    2011-01-01

    and financial flows have been increased and have appeared new emergent economies. Free trade and increasedInt. J. Complex Systems in Science vol. 1(2) (2011), pp. 202­208 Trade synchronization in the World Trade Web P. Erola1, , A. D´iaz-Guilera2 , S. G´omez1 and A. Arenas1 1 Departament d'Enginyeria Inform

  2. Future Generation Computer Systems 25 (2009) 599616 Contents lists available at ScienceDirect

    E-Print Network [OSTI]

    Melbourne, University of

    2009-01-01

    Future Generation Computer Systems 25 (2009) 599­616 Contents lists available at Science that computing will one day be the 5th utility (after water, electricity, gas, and telephony). This computing of harnessing `Storage Clouds' for high performance content delivery. Finally, we conclude with the need

  3. Life sciences

    SciTech Connect (OSTI)

    Day, L. (ed.)

    1991-04-01

    This document is the 1989--1990 Annual Report for the Life Sciences Divisions of the University of California/Lawrence Berkeley Laboratory. Specific progress reports are included for the Cell and Molecular Biology Division, the Research Medicine and Radiation Biophysics Division (including the Advanced Light Source Life Sciences Center), and the Chemical Biodynamics Division. 450 refs., 46 figs. (MHB)

  4. Generating Climbing Plants Using L-Systems Master of Science Thesis in the Programme Software Engineering and

    E-Print Network [OSTI]

    Assarsson, Ulf

    Generating Climbing Plants Using L-Systems Master of Science Thesis in the Programme Software Generating Climbing Plants Using L-Systems Johan Knutzen © Johan Knutzen Examiner: Ulf Assarsson Department Plants . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14 3 Generating Climbing

  5. Published on Science 2.0 (http://www.science20.com) Home > Life Sciences > Genetics & Molecular Biology > News Articles > Rad51: Watching Single Strands Of DNA Being Prepped For Repair Could Help Fight Breast Cancer

    E-Print Network [OSTI]

    Kowalczykowski, Stephen C.

    Biology > News Articles > Rad51: Watching Single Strands Of DNA Being Prepped For Repair Could Help Fight Breast Cancer Rad51: Watching Single Strands Of DNA Being Prepped For Repair Could Help Fight Breast: Watching Single Strands Of DNA Being Prepped For Repair Could Help Fight Br... 6/17/2013http

  6. Spring 2015 Advising Booklet Biomedical Engineering Chemical & Physical Biology Chemistry

    E-Print Network [OSTI]

    Wolfe, Patrick J.

    Spring 2015 Advising Booklet Biomedical Engineering · Chemical & Physical Biology · Chemistry Human: · Biomedical Engineering · Chemical and Physical Biology · Chemistry · Cognitive Neuroscience and Evolutionary in concentrating in the Life Sciences are advised to take courses in Life Sciences, chemistry, and mathematics

  7. Science and Engineering of an Operational Tsunami Forecasting System

    SciTech Connect (OSTI)

    Gonzalez, Frank

    2009-04-06

    After a review of tsunami statistics and the destruction caused by tsunamis, a means of forecasting tsunamis is discussed as part of an overall program of reducing fatalities through hazard assessment, education, training, mitigation, and a tsunami warning system. The forecast is accomplished via a concept called Deep Ocean Assessment and Reporting of Tsunamis (DART). Small changes of pressure at the sea floor are measured and relayed to warning centers. Under development is an international modeling network to transfer, maintain, and improve tsunami forecast models.

  8. Science and Engineering of an Operational Tsunami Forecasting System

    ScienceCinema (OSTI)

    Gonzalez, Frank

    2010-01-08

    After a review of tsunami statistics and the destruction caused by tsunamis, a means of forecasting tsunamis is discussed as part of an overall program of reducing fatalities through hazard assessment, education, training, mitigation, and a tsunami warning system. The forecast is accomplished via a concept called Deep Ocean Assessment and Reporting of Tsunamis (DART). Small changes of pressure at the sea floor are measured and relayed to warning centers. Under development is an international modeling network to transfer, maintain, and improve tsunami forecast models.

  9. New Mexico State University Department of Biology

    E-Print Network [OSTI]

    Houde, Peter

    1 New Mexico State University Department of Biology Functions and Criteria for Faculty Evaluation of Biology, the College of Arts and Sciences, and New Mexico State University reward and retain faculty

  10. Molecular Evolution, Networks in From: Meyers, R.A. (ed.) Encyclopedia of Complexity and System Science. Springer, Heidelberg

    E-Print Network [OSTI]

    Wagner, Andreas

    Molecular Evolution, Networks in From: Meyers, R.A. (ed.) Encyclopedia of Complexity and System of Biochemistry Computational Biology and Bioinformatics Building Y27 Winterthurerstrasse 190 CH-8057 Zurich

  11. Biology and Medicine Division annual report, 1987

    SciTech Connect (OSTI)

    Not Available

    1988-04-01

    Modern biology is characterized by rapid change. The development of new tools and the results derived from their application to various biological systems require significant shifts in our concepts and the strategies that are adopted to analyze and elucidate mechanisms. In parallel with exciting new scientific developments our organizational structure and programmatic emphases have altered. These changes and developments have enabled the life sciences at LBL to be better positioned to create and respond to new opportunities. The work summarized in this annual report reflects a vital multifaceted research program that is in the vanguard of the areas represented. We are committed to justifying the confidence expressed by LBL through the new mission statement and reorganizational changes designed to give greater prominence to the life sciences.

  12. Coherence and Decoherence in Biological Systems: Principles of Noise Assisted Transport and the Origin of Long-lived Coherences

    E-Print Network [OSTI]

    A. W. Chin; S. F. Huelga; M. B. Plenio

    2012-03-15

    The quantum dynamics of transport networks in the presence of noisy environments have recently received renewed attention with the discovery of long-lived coherences in different photosynthetic complexes. This experimental evidence has raised two fundamental questions: Firstly, what are the mechanisms supporting long-lived coherences and secondly, how can we assess the possible functional role that the interplay of noise and quantum coherence might play in the seemingly optimal operation of biological systems under natural conditions? Here we review recent results, illuminate them at the hand of two paradigmatic systems, the Fenna-Matthew-Olson (FMO) complex and the light harvesting complex LHII, and present new progress on both questions. In particular we introduce the concept of the phonon antennae and discuss the possible microscopic origin or long-lived electronic coherences.

  13. Crafting life : a sensory ethnography of fabricated biologies

    E-Print Network [OSTI]

    Roosth, Hannah Sophia

    2010-01-01

    This ethnography tracks a diverse set of practices I term "constructive biologies," by which I mean efforts in the post-genomic life sciences to understand how biology works by making new biological things. I examine five ...

  14. Eco-Hydro-Climate Science/Engineering in SESE Definition: An emerging frontier in Earth system science is the interaction of ecological,

    E-Print Network [OSTI]

    Rhoads, James

    Eco-Hydro-Climate Science/Engineering in SESE Definition: An emerging frontier in Earth system that are `retooled' to treat the coupled eco-hydro-climate system. Arid and semiarid regions (deserts) are a fruitful Southwest is thus an ideal laboratory for eco-hydro-climate studies and provides several case studies

  15. EFFECTS OF POLLUTANTS ON BIOLOGICAL SYSTEMS. CHAPTER FROM THE ENERGY AND ENVIRONMENT DIVISION ANNUAL REPORT 1979

    E-Print Network [OSTI]

    Authors, Various

    2010-01-01

    tion of paint," in Progress in Organic Coatings, J. -60 (organic coatings from aqueous systems is widely used, for example, to paint

  16. New Opportunities for Outer Solar System Science using Radioisotope Electric Propulsion

    SciTech Connect (OSTI)

    Noble, Robert J.; Amini, Rashied; Beauchamp, Patricia M.; Bennett, Gary L.; Brophy, John R.; Buratti, Bonnie J.; Ervin, Joan; Fernandez, Yan R.; Grundy, Will; Khan, Mohammed Omair; King, David Q.; Lang, Jared; Meech, Karen J.; Newhouse, Alan; Oleson, Steven R.; Schmidt, George R.; Spilker, Thomas; West, John L.; ,

    2010-05-26

    Today, our questions and hypotheses about the Solar System's origin have surpassed our ability to deliver scientific instruments to deep space. The moons of the outer planets, the Trojan and Centaur minor planets, the trans-Neptunian objects (TNO), and distant Kuiper Belt objects (KBO) hold a wealth of information about the primordial conditions that led to the formation of our Solar System. Robotic missions to these objects are needed to make the discoveries, but the lack of deep-space propulsion is impeding this science. Radioisotope electric propulsion (REP) will revolutionize the way we do deep-space planetary science with robotic vehicles, giving them unprecedented mobility. Radioisotope electric generators and lightweight ion thrusters are being developed today which will make possible REP systems with specific power in the range of 5 to 10 W/kg. Studies have shown that this specific power range is sufficient to perform fast rendezvous missions from Earth to the outer Solar System and fast sample return missions. This whitepaper discusses how mobility provided by REP opens up entirely new science opportunities for robotic missions to distant primitive bodies. We also give an overview of REP technology developments and the required next steps to realize REP.

  17. Climate & Environmental Sciences | Clean Energy | ORNL

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    global scales. Focus Areas Climate Change Science Institute Earth and Aquatic Sciences Ecosystem Science Energy-Water Resource Systems Environmental Data Science and Systems...

  18. Identification of Transition-Based Models of Biological Systems using Logic Programming

    E-Print Network [OSTI]

    New South Wales, University of

    the identification of: pure Petri nets; extended Petri nets; networks that re-use sub-nets; network from data Sydney 2052, Australia #12;Abstract Transition systems like Petri nets have been widely used to model networks and to capture the dynamics of system behaviour. To date, these models have mostly been specified

  19. Inverse problems in systems biology This article has been downloaded from IOPscience. Please scroll down to see the full text article.

    E-Print Network [OSTI]

    Schuster, Peter

    ]. The experimental data base for systems biology comes from various high-throughput technologies applied in fields, consideration of the interplay between the parts of systems is indispensable for analyzing, modeling experimental techniques and computational methods in order to construct predictive models. Both in building

  20. Synthesizing Law for Synthetic Biology

    E-Print Network [OSTI]

    Torrance, Andrew W.

    2010-01-01

    , metabolic pathways, cells, viruses, and whole organisms rapidly, inexpensively, and easily. Already, a number of institutions have helped synthetic biology achieve considerable success, both in terms of science and public awareness. The BioBricks Foundation...

  1. Synthetic biology and crop engineering

    Broader source: Energy.gov [DOE]

    Breakout Session 2: Frontiers and Horizons Session 2-A: Synthetic Biology and the Promise of Biofuels Jonathan Burbaum, Program Director, Department of Energy, Office of Science, ARPA–E

  2. ENGR G6601 Environmental Modeling for Earth Systems Science and Engineering/Syllabus 01/29/2014 City College of New York

    E-Print Network [OSTI]

    Wolberg, George

    ENGR G6601 Environmental Modeling for Earth Systems Science and Engineering/Syllabus 01 Science and Technology ENGR G6601 Environmental Modeling for Earth Systems Science and Engineering/29/2014 City College of New York Grove School of Engineering MS Program in Earth Systems and Environmental

  3. The Formation and Evolution of Planetary Systems SIRTF Legacy Science in the VLT Era

    E-Print Network [OSTI]

    Meyer, M R; Beckwith, S V W; Brooke, T Y; Carpenter, J M; Cohen, M; Gorti, U; Henning, T; Hillenbrand, L A; Hines, D; Hollenbach, D; Lunine, J; Malhotra, R; Mamajek, E; Morris, P; Najita, J R; Padgett, D L; Soderblom, D R; Stauffer, J; Strom, S E; Watson, D; Weidenschilling, S J; Young, E

    2001-01-01

    We will utilize the sensitivity of SIRTF through the Legacy Science Program to carry out spectrophotometric observations of solar-type stars aimed at (1) defining the timescales over which terrestrial and gas giant planets are built, from measurements diagnostic of dust/gas masses and radial distributions; and (2) establishing the diversity of planetary architectures and the frequency of planetesimal collisions as a function of time through observations of circumstellar debris disks. Together, these observations will provide an astronomical context for understanding whether our solar system - and its habitable planet - is a common or a rare circumstance. Achieving our science goals requires measuring precise spectral energy distributions for a statistically robust sample capable of revealing evolutionary trends and the diversity of system outcomes. Our targets have been selected from two carefully assembled databases of solar-like stars: (1) a sample located within 50 pc of the Sun spanning an age range from ...

  4. Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses

    Office of Scientific and Technical Information (OSTI)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity of NaturalDukeWakefieldSulfateSciTechtail. (Conference)Feedback System inStatusandArticle)SystemSystem(Journal Article) |

  5. Faculty of Science Computer Science

    E-Print Network [OSTI]

    Faculty of Science Computer Science Computer software engineering, network and system analysis.uwindsor.ca/computerscience The University of Windsor offers a variety of computer science programs to prepare students for a career in the technology industry or in research and academia. A computer science degree provides an in-depth understanding

  6. Faculty of Science Computer Science

    E-Print Network [OSTI]

    Faculty of Science Computer Science Software engineering, network and system analysis continue a variety of computer science programs to prepare students for a career in the technology industry or in research and academia. A computer science degree provides an in-depth understanding of the fundamentals

  7. Physical, Chemical & Biological Processes of the Environment A Systems Approach to Solving Environmental Problems

    E-Print Network [OSTI]

    the environment and human health 3 September 1 No class (Labor Day) 4 3 Human health and ecological risk an environmental or human health risk? 19 8 Concepts of biosphere systems 20 10 The photosynthetic reaction and its

  8. Biological and environmental efficiency of high producing dairy systems through application of life cycle analysis 

    E-Print Network [OSTI]

    Ross, Stephen Alexander

    2014-11-27

    Dairy production systems are an important global contributor to anthropogenic greenhouse gas (GHG) emissions including methane (CH4), nitrous oxide (N2O) and carbon dioxide (CO2). Due to the role GHG play in climate ...

  9. A Study to Determine the Biological Feasibility of a New Fish-Tagging System : Annual Report 1998-1999.

    SciTech Connect (OSTI)

    Downing, Sandra L.; Prentice, Earl F.; Peterson, Bradley W.; Nunnallee, Edmund P.; Jonasson, Bruce F.

    2000-09-01

    This report covers our work during 1998 and 1999 (FY99) on a project to expand and improve technology for passive-integrated-transponder tags (PIT tags) throughout the Columbia River Basin. The National Marine Fisheries Service (NMFS) in cooperation with the Bonneville Power Administration (BPA) conducted the work. Timely and accurate information derived from PIT-tag technology is increasingly critical to resource stakeholders in assessing the effectiveness of efforts to enhance survival of juvenile and adult salmonids. Continued development of PIT-tag technology will enable researchers and fisheries managers to address issues expressed in the NMFS biological opinions for operation of the Federal Columbia River Power System (FCRPS) and the proposed Snake River Recovery Plan. The FY99 work was divided into individual projects that are covered separately in this report.

  10. Chemistry and Chemical Biology

    E-Print Network [OSTI]

    Linhardt, Robert J.

    /polymeric materials for electronics or energy storage, and polyelectrolyte membranes for fuel cell applications. http projects in emerging fields of science and technology that lie at the intersection between chemistry Biology at Rensselaer invites applications from students interested in pursuing a Ph.D. degree

  11. Biology BS, Molecular Cell Biology Emphasis, 2015-2016 Name ID# Date

    E-Print Network [OSTI]

    Barrash, Warren

    Biology BS, Molecular Cell Biology Emphasis, 2015-2016 Name ID# Date Course Number and Title 160 or MATH 170 4 DLN BIOL 191 General Biology I 4 DLN CHEM 111, 111L General Chemistry I with Lab 4 in a first field 3 DLS Social Sciences course in a second field 3 BIOL 192 General Biology II 4 BIOL 301 Cell

  12. Approaches to Biology Teaching and Learning Cultural Competence in the College Biology Classroom

    E-Print Network [OSTI]

    Feature Approaches to Biology Teaching and Learning Cultural Competence in the College Biology Classroom Kimberly Tanner* and Deborah Allen *Department of Biology, San Francisco State University, San Francisco, CA 94132; and Department of Biological Sciences, University of Delaware, Newark, DE 19716

  13. Approaches to Biology Teaching and Learning Making Biology Learning Relevant to Students: Integrating

    E-Print Network [OSTI]

    Feature Approaches to Biology Teaching and Learning Making Biology Learning Relevant to Students: Integrating People, History, and Context into College Biology Teaching Katayoun Chamany,*Deborah Allen College, The New School for Liberal Arts, New York, NY 10011; Department of Biological Sciences

  14. A First Attempt to Bring Computational Biology into Advanced High School Biology Classrooms

    E-Print Network [OSTI]

    Goldberg, Debra S.

    Education A First Attempt to Bring Computational Biology into Advanced High School Biology Department of Computer Science, University of Colorado, Boulder, Colorado, United States of America, 2Boulder of a computational ele- ment in secondary biology classrooms is of growing concern to the computational biology

  15. Cryoelectron Microscopy as a Functional Instrument for Systems Biology, Structural Analysis & Experimental Manipulations with Living Cells. A comprehensive review of the current works

    E-Print Network [OSTI]

    Oleg V. Gradov; Margaret A. Gradova

    2015-01-18

    The aim of this paper is to give an introductory review of the cryoelectron microscopy as a complex data source for the most of the system biology branches, including the most perspective non-local approaches known as "localomics" and "dynamomics". A brief summary of various cryoelectron mi-croscopy methods and corresponding system biological ap-proaches is given in the text. The above classification can be considered as a useful framework for the primary comprehen-sions about cryoelectron microscopy aims and instrumental tools. We do not discuss any of these concepts in details, but merely point out that their methodological complexity follows only from the structure-functional complexity of biological systems which are investigated in this manner. We also postu-late that one can employ some of the cryoelectron microscopic techniques not only for observation, but also for modification and structural refunctionalization of some biological and similar soft matter objects and microscopic samples. In other worlds, we start with the cryoelectron microscopy as a tool for the sys-tem biology and progress to its applying as an instrument for system biology and functional biomimetics; i.e. "system cryobi-ology" goes over into "synthetic cryobiology" or "cryogenic biomimetics". All these conclusions can be deduced from the most recent works of the latest years, including just submitted foreign papers. This article provides an up-to-date description of the conceptual basis for the novel view on the computational cryoelectron microscopy (in silico) approaches and the data mining principles which lie at the very foundation of modern structural analysis and reconstruction.

  16. Studying chemical reactions in biological systems with MBN Explorer: implementation of molecular mechanics with dynamical topology

    E-Print Network [OSTI]

    Sushko, Gennady B; Verkhovtsev, Alexey V; Volkov, Sergey N; Solov'yov, Andrey V

    2015-01-01

    The concept of molecular mechanics force field has nowadays been widely accepted for studying various processes in biomolecular systems. In this paper we suggest a modification for the standard CHARMM force field, that permits simulations of systems with dynamically changing molecular topologies. The implementation of the modified force field was carried out in the popular program MBN Explorer, and, to support the development, in this paper we provide several case studies where dynamical topology is necessary. In particular, it is shown, that the modified molecular mechanics force field can be applied for studying processes where rupture of chemical bonds plays an essential role, e.g., in irradiation or collision induced damage, transformation and fragmentation processes involving biomolecular systems.

  17. UW CSE is housed in the Paul G. Allen Center for Computer Science & Engineering, made possible

    E-Print Network [OSTI]

    Washington at Seattle, University of

    UW CSE is housed in the Paul G. Allen Center for Computer Science & Engineering, made possible Computer graphics, computer vision, and animation Human-computer interaction and ubiquitous computing, and intelligent Internet systems Software engineering Computational biology and synthetic biology Computational

  18. Biological Sciences Sheila Hedayati (BSO)

    E-Print Network [OSTI]

    Wood, Marcelo A.

    Industrial Hygiene Specialist Alvin Samala Industrial Hygiene Specialist David Kang Industrial Hygiene Energy%) Industrial Hygiene Specialist Susan Robb Industrial Hygiene Specialist Jay Seong Industrial Hygiene Energy Safety Prevention Specialist (80%) Industrial Hygiene Specialist VACANT Fire Safety Prevention Specialist

  19. Biological Science | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Home Page on Google Bookmark EERE: Alternative Fuels Data Center Home Page on Delicious Rank EERE: Alternative Fuels Data Center HomeVehicle ReplacementStatesA Case Study9th-12thVersatile

  20. OFFICE OF BIOLOGICAL AND ENVIRONMENTAL RESEARCH Climate and Earth System Modeling

    E-Print Network [OSTI]

    and their interactions with climate under conditions of increasing atmospheric carbon dioxide (CO2 ), we need to develop-analyses of terrestrial ecosystem manipulations of carbon dioxide, warming, nutrients, soil moisture, and tree cover benchmarking system that leverages a growing collection of laboratory, field, and remote sensing data

  1. A PLL-Based Frequency Shift Measurement System for Chemical and Biological Sensing 

    E-Print Network [OSTI]

    Torke, William

    2012-02-14

    while the other assembly contains commercially available PLL and MCU devices, as well as various other discrete components. When mated together, a PLL-based frequency synthesizer is realized, the output frequency of which is ~4.5 GHz. The system is used...

  2. Future Generation Computer Systems 29 (2013) 472487 Contents lists available at SciVerse ScienceDirect

    E-Print Network [OSTI]

    Sakellariou, Rizos

    2013-01-01

    Future Generation Computer Systems 29 (2013) 472­487 Contents lists available at SciVerse Science or water [1]. For the underlying infrastructure this means that it has to deal with dynamic load changes

  3. Future Generation Computer Systems 29 (2013) 10121023 Contents lists available at SciVerse ScienceDirect

    E-Print Network [OSTI]

    Melbourne, University of

    2013-01-01

    Future Generation Computer Systems 29 (2013) 1012­1023 Contents lists available at SciVerse Science (e.g., water, electricity and gas). The three main services are provided by the Cloud computing ar

  4. Proceedings of 2006 International Conference on Nonlinear Science and Complexity Experiments on pattern formation in reacting systems

    E-Print Network [OSTI]

    Solomon, Tom

    In 1984, Aref demonstrated [14] that mixing is typically chaotic in a simple, laminar fluid flow composed-diffusion systems [1],[2], e.g., chemically-reacting or biological systems without any fluid flows. But most fluid fluid flows. The general advection-reaction-diffusion problem has recently begun to receive theoretical

  5. The Systems Science & Industrial Engineering (SSIE) Department and The Thomas J. Watson School of Engineering and Applied

    E-Print Network [OSTI]

    Suzuki, Masatsugu

    The Systems Science & Industrial Engineering (SSIE) Department and The Thomas J. Watson School professionals, we will open the doors to demonstrate what industrial and systems engineers can contribute to any. We offer the BS degree in industrial and systems engineering (ISE), MEng degree in industrial

  6. Introduction Faculty of Science

    E-Print Network [OSTI]

    Banbara, Mutsunori

    of Science consists of mathematics, physics, chemistry, biology, and earth and planetary sciences. We conduct teachers, and the remaining take jobs at public offices including government positions, as well as private and Doctoral programs. The school, consisting of mathematics, physics, chemistry, biology, and earth

  7. Windows on Computer Science Department of Computer and Information Science

    E-Print Network [OSTI]

    Fang, Shiaofen

    1 CSCI 120 Windows on Computer Science Department of Computer and Information Science IUPUI What is Computer Science? Is Computer Science the study of computers (Building computers, and writing computer programs) ? Computer Science is no more about computers than astronomy is about telescopes, or biology

  8. Biology and management of insect pests in North American intensively managed hardwood forest systems.

    SciTech Connect (OSTI)

    Coyle, David R.; Nebeker, T., E.; Hart, E., R.; Mattson, W., J.

    2005-01-01

    Annu. Rev. Entomol. 50:1-29. Abstract Increasing demand for wood and wood products is putting stress on traditional forest production areas, leading to long-term economic and environmental concerns. Intensively managed hardwood forest systems (IMHFS), grown using conventional agricultural as well as forestry methods, can help alleviate potential problems in natural forest production areas. Although IMHFS can produce more biomass per hectare per year than natural forests, the ecologically simplified, monocultural systems may greatly increase the crops susceptibility to pests. Species in the genera Populus and Salix comprise the greatest acreage in IMHFS in North America, but other species, including Liquidambar styracifua and Platanus occidentalis, are also important. We discuss life histories, realized and potential damage, and management options for the most economically infuential pests that affect these hardwood species. The substantial inherent challenges associated with pest management in the monocultural environments created by IMHFS are reviewed. Finally, we discuss ways to design IMHFS that may reduce their susceptibility to pests, increase their growth and productivity potential, and create a more sustainable environment.

  9. Thirty-seventh Hawaii International Conference on System Sciences, January 2004, Big Island, Hawaii. c 2004 IEEE. A branching process approximation to cascading load-dependent system failure

    E-Print Network [OSTI]

    Thirty-seventh Hawaii International Conference on System Sciences, January 2004, Big Island, Hawaii. c 2004 IEEE. A branching process approximation to cascading load-dependent system failure Ian Dobson, electric power transmission systems must be designed and operated to reduce the risk of widespread

  10. RYERSON UNIVERSITY FACULTY OF SCIENCE

    E-Print Network [OSTI]

    Pralat, Pawel

    CONNECTED SCIENCE RYERSON UNIVERSITY FACULTY OF SCIENCE ANNUAL REPORT 2013 #12;THE NEW FACULTY OF SCIENCE DEPARTMENT OF COMPUTER SCIENCE DEPARTMENT OF MATHEMATICS DEPARTMENT OF CHEMISTRY AND BIOLOGY DEPARTMENT OF PHYSICS #12;RYERSON UNIVERSITY FACULTY OF SCIENCE ANNUAL REPORT 2013 3 TABLE OF CONTENTS

  11. Applied Plant Sciences 48 Applied Plant Sciences Courses (APSC) 226

    E-Print Network [OSTI]

    Thomas, David D.

    .D. 55 Audiology See Speech-Language-Hearing Sciences B Biochemistry Courses (BIOC) 234 Biochemistry Biological Science 58 M.B.S. 59 Biology Courses (BIOL) 235 Biomedical Engineering 59 Biomedical Engineering Science Engineering and Management 61 Bioproducts and Biosystems Engineering Courses (BBE) 237 M

  12. DEFG0202ER63445, PI = Professor George M. Church June 28, 2011 PROPOSAL FOR DEVELOPMENT OF ENHANCED INVIVO AND EXVIVO SYNTHETIC BIOLOGY METHODS

    E-Print Network [OSTI]

    Church, George M.

    _office@genetics.med.harvard.edu FOA Number: DEFOA0000412 DOE/OSP Office: BER Biological Systems Science DOE/OSP Manager Contact Independence Avenue, S.W. Washington, DC 208551290 DOE Grant Number: DEFG0202ER63445 SUBCONTRACTS Objectives The goal of our proposed DOE Genomic Sciences Center renewal is to develop and demonstrate new

  13. Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    ScienceCinema (OSTI)

    Glass, N Louise [UC Berkeley

    2013-01-25

    N. Louise Glass from the University of California, Berkeley, presents a talk titled "Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

  14. Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus (JGI Seventh Annual User Meeting 2012: Genomics of Energy and Environment)

    SciTech Connect (OSTI)

    Glass, N Louise [UC Berkeley] [UC Berkeley

    2012-03-22

    N. Louise Glass from the University of California, Berkeley, presents a talk titled "Systems Biology Approaches to Dissecting Plant Cell Wall Biosynthesis Genes in Poplus" at the JGI 7th Annual Users Meeting: Genomics of Energy & Environment Meeting on March 22, 2012 in Walnut Creek, California.

  15. JMLR: Workshop and Conference Proceedings 1: 112-121 Machine Learning in Systems Biology Event based text mining for integrated network construction

    E-Print Network [OSTI]

    Gent, Universiteit

    based text mining for integrated network construction Yvan Saeys yvan.saeys@psb.ugent.be Sofie Van Systems Biology, VIB Department of Molecular Genetics, University of Ghent 9052, Gent, Belgium Editor entities. Text mining techniques have been increasingly useful to extract such information from

  16. LifeMEETSscience Biochemistry, Molecular Biology & Biophysics

    E-Print Network [OSTI]

    Thomas, David D.

    LifeMEETSscience Biochemistry, Molecular Biology & Biophysics Science Meets Life. Minnesota with the guidance of internationally-renowned scientists in the Biochemistry, Molecular Biology and Biophysics (BMBB that is a hallmark of the Twin Cities and Minnesota. The Biochemistry, Molecular Biology & Biophysics Graduate

  17. University of Windsor Faculty of Science Programs of Study (Winter 2015 Calendar) Note: No new admissions to concurrent program as of Fall 2014.

    E-Print Network [OSTI]

    Biochemistry Biological Sciences Chemistry Computer Science Earth Science Economics Environmental Science (Honours Biological Sciences with thesis)/Bachelor of Education CHEMISTRY AND BIOCHEMISTRY Honours Chemistry Honours Chemistry with Thesis Honours Chemistry and Physics Honours Chemistry and Physics

  18. Abstract Tracking System | U.S. DOE Office of Science (SC)

    Office of Science (SC) Website

    Energy Sciences Advisory Committee (BESAC) News & Resources Program Summaries Brochures Reports Accomplishments Presentations BES and Congress Science for Energy Flow Seeing...

  19. An inexpensive passive acoustic system for recording and localizing wild animal sounds

    E-Print Network [OSTI]

    An inexpensive passive acoustic system for recording and localizing wild animal sounds Sean A. Hayes Biology Department, A316 Earth and Marine Science Building, University of California, Santa Cruz and Institute of Marine Science, A316 Earth and Marine Science Building, University of California, Santa Cruz

  20. COMPUTATIONAL SCIENCE CENTER

    SciTech Connect (OSTI)

    DAVENPORT,J.

    2004-11-01

    The Brookhaven Computational Science Center brings together researchers in biology, chemistry, physics, and medicine with applied mathematicians and computer scientists to exploit the remarkable opportunities for scientific discovery which have been enabled by modern computers. These opportunities are especially great in computational biology and nanoscience, but extend throughout science and technology and include for example, nuclear and high energy physics, astrophysics, materials and chemical science, sustainable energy, environment, and homeland security.

  1. High performance bioinformatics and computational biology on general-purpose graphics processing units 

    E-Print Network [OSTI]

    Ling, Cheng

    2012-06-25

    Bioinformatics and Computational Biology (BCB) is a relatively new multidisciplinary field which brings together many aspects of the fields of biology, computer science, statistics, and engineering. Bioinformatics ...

  2. BioFrameNet: A FrameNet Extension to the Domain of Molecular Biology

    E-Print Network [OSTI]

    Dolbey, Andrew

    2009-01-01

    Walter. 2002. Molecular Biology of the Cell. 4 th Edition.Natural Language Processing and Systems Biology. Artificialand Tools for Systems Biology: 147­174. Werner Dubitzky and

  3. Lunar Science as a Window into the Early Evolution of the Solar System and Conditions on the Early Earth

    E-Print Network [OSTI]

    Crawford, Ian

    Earth In collaboration with the Geological Society of London, and the UK node of the NASA Lunar Science into the Early Evolution of the Solar System and Conditions on the Early Earth. For the last 4.5 billion years the Earth and Moon have essentially comprised a binary planet system which is unique in the inner Solar

  4. Roadmap: Biology -Bachelor of Arts [AS-BA-BSCI

    E-Print Network [OSTI]

    Sheridan, Scott

    Roadmap: Biology - Bachelor of Arts [AS-BA-BSCI] College of Arts and Sciences Department of Biological Sciences Catalog Year: 2012­2013 Page 1 of 3 | Last Updated: 2-May-12/LNHD This roadmap hours and minimum 42 upper- division credit hours #12;Roadmap: Biology - Bachelor of Arts [AS

  5. Redirecting science

    SciTech Connect (OSTI)

    Aaserud, F.

    1990-01-01

    This book contains the following chapters. Science policy and fund-raising up to 1934; The Copenhagen spirit at work, late 1920's to mid-1930s; The refugee problem, 1933 to 1935; Experimental biology, late 1920s to 1935; and Consolidation of the transition, 1935 to 1940.

  6. Synthetic Biology: Engineering, Evolution and Design (SEED) Conference 2014

    SciTech Connect (OSTI)

    Voigt, Christopher

    2014-07-01

    SEED2014 focused on advances in the science and technology emerging from the field of synthetic biology. We broadly define this as technologies that accelerate the process of genetic engineering. It highlighted new tool development, as well as the application of these tools to diverse problems in biotechnology, including therapeutics, industrial chemicals and fuels, natural products, and agriculture. Systems spanned from in vitro experiments and viruses, through diverse bacteria, to eukaryotes (yeast, mammalian cells, plants).

  7. Published as: (1) Aerts, D., 2001, "Transdisciplinary and integrative sciences in sustainable development", in Our Fragile World, a forerunner of the Encyclopedia of Life Support Systems,

    E-Print Network [OSTI]

    Aerts, Diederik

    development", in Our Fragile World, a forerunner of the Encyclopedia of Life Support Systems, Baldwin House development", in the Encyclopedia of Life Support Systems, Baldwin House, Aldates, Oxford. TRANSDISCIPLINARY University, Brussels, Belgium Keywords Acceleration, actual, analysis, application, army, artists, biology

  8. BachelorofScience Biochemistry

    E-Print Network [OSTI]

    Seldin, Jonathan P.

    BachelorofScience Biochemistry This is a planning guide and not a graduation check or guarantee: ____________________________________ Program Planning Guide Major in Biochemistry: www.uleth.ca/artsci/biochemistry Departments: Biological Sciences, and Chemistry and Biochemistry #12;2 Bachelor of Science - Biochemistry Calendar Year - 2013

  9. Navigation Links Biology News

    E-Print Network [OSTI]

    Espinosa, Horacio D.

    Navigation Links Biology News Medicine News Biology Products Medicine Products Biology Definition Medicine Definition Biology Technology Medicine Technology Biology Dictionary Medicine Dictionary Biology Navigation Medical Navigation MHOME >> BIOLOGY >> NEWS Single-cell transfection tool enables added control

  10. INSTITUTE FOR COASTAL SCIENCE

    E-Print Network [OSTI]

    Gopalakrishnan, K.

    plain, and barrier island systems Social Science and Coastal Policy: Examine politics and public policy

  11. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    and structural genomics, and applications for such work cover diverse fields such as energy, agriculture, and environmental cleanup. Get Expertise Babetta Marrone Biofuels...

  12. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantity ofkandz-cm11 Outreach Home Room NewsInformation Current HABFESOpportunities NuclearlongGeneral Tables The GeneralGenomeGenomics

  13. Genomics and Systems Biology

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE: Alternative Fuels Data Center Homesum_a_epg0_fpd_mmcf_m.xls" ,"Available from WebQuantityBonneville Power Administration would likeUniverse (Journalvivo Low-Dose Low LET Ionizing Radiation Exposure:

  14. The confluence of digital design/fabrication and biological principles : systematic knowledge transfer for the development of integrated architectural systems

    E-Print Network [OSTI]

    Sharif, Shani

    2010-01-01

    In the last century, many of the developed computational theories and methods have been inspired by biological principles. The design generation methods, originating from these theories, along with the advances in digital ...

  15. SCIENCE & ENGINEERING84 Understanding Paper Codes 85

    E-Print Network [OSTI]

    Waikato, University of

    SCIENCE & ENGINEERING84 PAPERS Understanding Paper Codes 85 100 Level Science Papers 86 Biological Sciences 87 Chemistry 94 Earth Sciences 99 Electronics 106 Engineering 111 Environmental Sciences 115 Material and Processing 116 Physics 124 Psychology 127 Work Placements 133 ­ Science 133 ­ Engineering 134

  16. Montana State University 1 Plant Science

    E-Print Network [OSTI]

    Maxwell, Bruce D.

    and also fits into either the Crop Science or Plant Biology options. Crop Science Option Continued. Course requirements in the Crop Science option are designed to acquaint students with the principles. Undergraduate Programs · Crop Science Option (http://catalog.montana.edu/undergraduate/ agriculture/plant-science/crop-science

  17. Undergraduate Marine Science Program Student Advising Guide

    E-Print Network [OSTI]

    Miami, University of

    Undergraduate Marine Science Program Student Advising Guide 2013-2014 #12;TABLE OF CONTENTS 1. Introduction 2. Degree Programs and Sample Curricula MARINE AFFAIRS ­ BAMA MARINE SCIENCE / BIOLOGY ­ BSMAS MARINE SCIENCE / CHEMISTRY ­ BSMAS MARINE SCIENCE / GEOLOGICAL SCIENCES ­ BSMAS MARINE SCIENCE / PHYSICS

  18. Development of an Implementation Plan Related to Biological Opinion on Operation of the Federal Columbia River Power System ; Step 1: Review and Critique of Implementation Plans.

    SciTech Connect (OSTI)

    Neitzel, Duane A.; Bunn, Amoret

    2000-12-01

    The Draft Biological Opinion on Operation of the Federal Columbia River Power System calls for the development of 1- and 5-year implementation plans. These plans will provide the roadmap for planning and subsequent implementation of actions intended to meet specific performance standards (i.e., biological objectives) in a timely manner. To develop implementation plans the key tasks and sequences of steps must be determined. Those responsible for specific tasks must be identified and they must understand what they need to do. There must be assurances that the resources (human, physical, and fiscal) to complete the tasks are available. Motivation and incentive systems should be set up. Systems to coordinate efforts and guide activity must be devised and installed. An information management system must be designed to manage and analyze data and ensure that appropriate data are collected. This will aid managers in assessing whether individual activities or actions are tracking with stated goals and objectives. Training programs to improve managerial and worker capability in making and implementing plans should be designed. Managerial leadership to guide the efforts of all individuals in achieving the goals of the anadromous and resident fish recovery must be developed. It is the entire process of managing fish recovery in relationship to the Biological Opinion that will guide, coordinate, motivate, and control work and determine the effectiveness and efficiency of plan implementation.

  19. Biological Safety

    Broader source: Energy.gov [DOE]

    The DOE's Biological Safety Program provides a forum for the exchange of best practices, lessons learned, and guidance in the area of biological safety. This content is supported by the Biosurety Executive Team. The Biosurety Executive Team is a DOE-chartered group. The DOE Office of Worker Safety and Health Policy provides administrative support for this group. The group identifies biological safety-related issues of concern to the DOE and pursues solutions to issues identified.

  20. Life sciences and environmental sciences

    SciTech Connect (OSTI)

    Not Available

    1992-02-01

    The DOE laboratories play a unique role in bringing multidisciplinary talents -- in biology, physics, chemistry, computer sciences, and engineering -- to bear on major problems in the life and environmental sciences. Specifically, the laboratories utilize these talents to fulfill OHER`s mission of exploring and mitigating the health and environmental effects of energy use, and of developing health and medical applications of nuclear energy-related phenomena. At Lawrence Berkeley Laboratory (LBL) support of this mission is evident across the spectrum of OHER-sponsored research, especially in the broad areas of genomics, structural biology, basic cell and molecular biology, carcinogenesis, energy and environment, applications to biotechnology, and molecular, nuclear and radiation medicine. These research areas are briefly described.