Powered by Deep Web Technologies
Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


1

Systems Security at Chemical and Biochemical Engineering  

E-Print Network [OSTI]

and Biochemical Engineering. The Systems Administrator for Chemical and Biochemical Engineering regularly reviews network security.However, maintaining systems security is a group effort and a never-ending task. Here Administrator regarding security bugs that may affect your personal computer. If a patch is available, download

2

Mutual information in time-varying biochemical systems  

E-Print Network [OSTI]

Cells must continuously sense and respond to time-varying environmental stimuli. These signals are transmitted and processed by biochemical signalling networks. However, the biochemical reactions making up these networks are intrinsically noisy, which limits the reliability of intracellular signalling. Here we use information theory to characterise the reliability of transmission of time-varying signals through elementary biochemical reactions in the presence of noise. We calculate the mutual information for both instantaneous measurements and trajectories of biochemical systems for a Gaussian model. Our results indicate that the same network can have radically different characteristics for the transmission of instantaneous signals and trajectories. For trajectories, the ability of a network to respond to changes in the input signal is determined by the timing of reaction events, and is independent of the correlation time of the output of the network. We also study how reliably signals on different time-scales can be transmitted by considering the frequency-dependent coherence and gain-to-noise ratio. We find that a detector that does not consume the ligand molecule upon detection can more reliably transmit slowly varying signals, while an absorbing detector can more reliably transmit rapidly varying signals. Furthermore, we find that while one reaction may more reliably transmit information than another when considered in isolation, when placed within a signalling cascade the relative performance of the two reactions can be reversed. This means that optimising signal transmission at a single level of a signalling cascade can reduce signalling performance for the cascade as a whole.

Filipe Tostevin; Pieter Rein ten Wolde

2010-06-16T23:59:59.000Z

3

Development of a system for characterizing biomass quality of lignocellulosic feedstocks for biochemical conversion.  

E-Print Network [OSTI]

??The purpose of this research was twofold: (i) to develop a system for screening lignocellulosic biomass feedstocks for biochemical conversion to biofuels and (ii) to… (more)

Murphy, Patrick Thomas

2009-01-01T23:59:59.000Z

4

Kinetic Theory of Dynamical Systems  

E-Print Network [OSTI]

It is generally believed that the dynamics of simple fluids can be considered to be chaotic, at least to the extent that they can be modeled as classical systems of particles interacting with short range, repulsive forces. Here we give a brief introduction to those parts of chaos theory that are relevant for understanding some features of non-equilibrium processes in fluids. We introduce the notions of Lyapunov exponents, Kolmogorov-Sinai entropy and related quantities using some simple low-dimensional systems as "toy" models of the more complicated systems encountered in the study of fluids. We then show how familiar methods used in the kinetic theory of gases can be employed for explicit, analytical calculations of the largest Lyapunov exponent and KS entropy for dilute gases composed of hard spheres in d dimensions. We conclude with a brief discussion of interesting, open problems.

R. van Zon; H. van Beijeren; J. R. Dorfman

1999-06-24T23:59:59.000Z

5

Quantum proof systems and entanglement theory  

E-Print Network [OSTI]

Quantum complexity theory is important from the point of view of not only theory of computation but also quantum information theory. In particular, quantum multi-prover interactive proof systems are defined based on ...

Abolfathe Beikidezfuli, Salman

2009-01-01T23:59:59.000Z

6

A Credibility Theory for Automobile Bonus Systems  

E-Print Network [OSTI]

R. Norberg A Credibility Theory for Automobile Bonus Systems Reprinted from Scandinaviun Actuarial Journal, 1976 #12;Scand. Actuarial J. 1976:92-107 A CredibilityTheory for Automobile Bonus Systems rating systems of the bonus type, commonly used in automobile insurance. On the basis of a simple model

Maume-Deschamps, Véronique

7

Hamilton-Jacobi Theory and Superintegrable Systems .  

E-Print Network [OSTI]

??Hamilton-Jacobi theory provides a powerful method for extracting the equations of motion out of some given systems in classical mechanics. On occasion it allows some… (more)

Armstrong, Craig Keith

2007-01-01T23:59:59.000Z

8

Hierarchical graphs for better annotations of rule-based models of biochemical systems  

SciTech Connect (OSTI)

In the graph-based formalism of the BioNetGen language (BNGL), graphs are used to represent molecules, with a colored vertex representing a component of a molecule, a vertex label representing the internal state of a component, and an edge representing a bond between components. Components of a molecule share the same color. Furthermore, graph-rewriting rules are used to represent molecular interactions, with a rule that specifies addition (removal) of an edge representing a class of association (dissociation) reactions and with a rule that specifies a change of vertex label representing a class of reactions that affect the internal state of a molecular component. A set of rules comprises a mathematical/computational model that can be used to determine, through various means, the system-level dynamics of molecular interactions in a biochemical system. Here, for purposes of model annotation, we propose an extension of BNGL that involves the use of hierarchical graphs to represent (1) relationships among components and subcomponents of molecules and (2) relationships among classes of reactions defined by rules. We illustrate how hierarchical graphs can be used to naturally document the structural organization of the functional components and subcomponents of two proteins: the protein tyrosine kinase Lck and the T cell receptor (TCR)/CD3 complex. Likewise, we illustrate how hierarchical graphs can be used to document the similarity of two related rules for kinase-catalyzed phosphorylation of a protein substrate. We also demonstrate how a hierarchical graph representing a protein can be encoded in an XML-based format.

Hu, Bin [Los Alamos National Laboratory; Hlavacek, William [Los Alamos National Laboratory

2009-01-01T23:59:59.000Z

9

DENSITY FUNCTIONAL THEORY OF FIELD THEORETICAL SYSTEMS  

E-Print Network [OSTI]

DENSITY FUNCTIONAL THEORY OF FIELD THEORETICAL SYSTEMS E. Engel Inst. fur Theor. Physik background of relativistic density functional theory is emphasized and its consequences for relativistic Kohn-Sham equations are shown. The local density approximation for the exchange energy functional is reviewed

Engel, Eberhard

10

Advanced topics in control systems theory II  

E-Print Network [OSTI]

Advanced topics in control systems theory II Lecture notes from FAP 2005 Editors: Antonio Lor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 38 1.8.2 Inverted Pendulum.4 The desired energy function Hd with kv = 0. . . . . . . . . . . . . . . . . . 32 1.5 Closed-loop responses

Nesic, Dragan

11

A multicenter study demonstrating discordant results from electronic prostate-specific antigen biochemical failure calculation systems  

SciTech Connect (OSTI)

Purpose: To evaluate the interobserver variation of four electronic biochemical failure (bF) calculators using three bF definitions. Methods and Materials: The data of 1200 men were analyzed using the electronic bF calculators of four institutions. Three bF definitions were examined for their concordance of bF identification across the centers: the American Society for Therapeutic Radiology and Oncology consensus definition (ACD), the lowest prostate-specific antigen (PSA) level to date plus 2 ng/mL (L2), and a threshold of 3 ng/mL (T3). Results: Unanimous agreement regarding bF status using the ACD, L2, and T3 definitions occurred in 87.3%, 96.4%, and 92.7% of cases, respectively. Using the ACD, 63% of the variation was from one institution, which allowed the bF status to be reversed if a PSA decline was seen after bF (PSA 'bounce'). A total of 270 men had an ACD bF time variation of >2 months across the calculators, and the 5-year freedom from bF rate was 49.8-60.9%. The L2 definition had a 20.5% rate of calculated bF times; which varied by >2 months (median, 6.4; range, 2.1-75.6) and a corresponding 5-year freedom from bF rate of 55.9-61.0%. The T3 definition had a 2.0% range in the 5-year freedom from bF. Fifteen definition interpretation variations were identified. Conclusion: Reported bF results vary not only because of bF definition differences, but because of variations in how those definitions are written into computer-based calculators, with multiple interpretations most prevalent for the ACD. An algorithm to avoid misinterpretations is proposed for the L2 definition. A verification system to guarantee consistent electronic bF results requires development.

Williams, Scott G. [Peter MacCallum Cancer Centre and University of Melbourne, Melbourne (Australia)]. E-mail: scott.williams@petermac.org; Pickles, Tom [British Columbia Cancer Agency, Vancouver, BC (Canada); Kestin, Larry [William Beaumont Hospital, Royal Oak, MI (United States); Potters, Louis [New York Prostate Institute, South Nassau Communities Hospital, Oceanside, NY (United States); Fearn, Paul [New York Prostate Institute, South Nassau Communities Hospital, Oceanside, NY (United States); Smith, Ryan [William Buckland Radiotherapy Centre, The Alfred Hospital, Melbourne (Australia); Pratt, Gary [Division of Oncology, Royal Brisbane Hospital, Brisbane (Australia)

2006-08-01T23:59:59.000Z

12

The Theory of Random Laser Systems  

SciTech Connect (OSTI)

Studies of random laser systems are a new direction with promising potential applications and theoretical interest. The research is based on the theories of localization and laser physics. So far, the research shows that there are random lasing modes inside the systems which is quite different from the common laser systems. From the properties of the random lasing modes, they can understand the phenomena observed in the experiments, such as multi-peak and anisotropic spectrum, lasing mode number saturation, mode competition and dynamic processes, etc. To summarize, this dissertation has contributed the following in the study of random laser systems: (1) by comparing the Lamb theory with the Letokhov theory, the general formulas of the threshold length or gain of random laser systems were obtained; (2) they pointed out the vital weakness of previous time-independent methods in random laser research; (3) a new model which includes the FDTD method and the semi-classical laser theory. The solutions of this model provided an explanation of the experimental results of multi-peak and anisotropic emission spectra, predicted the saturation of lasing modes number and the length of localized lasing modes; (4) theoretical (Lamb theory) and numerical (FDTD and transfer-matrix calculation) studies of the origin of localized lasing modes in the random laser systems; and (5) proposal of using random lasing modes as a new path to study wave localization in random systems and prediction of the lasing threshold discontinuity at mobility edge.

Xunya Jiang

2002-06-27T23:59:59.000Z

13

Time Dependent Density Functional Theory Application to Extended Systems  

E-Print Network [OSTI]

Time Dependent Density Functional Theory Application to Extended Systems Francesco Sottile Facility (ETSF) Donostia, 25 July 2007 Time Dependent Density Functional Theory Francesco Sottile #12 Density Functional Theory Francesco Sottile #12;Linear Periodic systems ALDA The Quest for the Holy

Botti, Silvana

14

Open quantum systems and Random Matrix Theory  

E-Print Network [OSTI]

A simple model for open quantum systems is analyzed with Random Matrix Theory. The system is coupled to the continuum in a minimal way. In this paper we see the effect of opening the system on the level statistics, in particular the $\\Delta_3(L)$ statistic, width distribution and level spacing are examined as a function of the strength of this coupling. A super-radiant transition is observed, and it is seen that as it is formed, the level spacing and $\\Delta_3(L)$ statistic exhibit the signatures of missed levels.

Declan Mulhall

2015-01-09T23:59:59.000Z

15

Scattering Theory for Open Quantum Systems  

E-Print Network [OSTI]

Quantum systems which interact with their environment are often modeled by maximal dissipative operators or so-called Pseudo-Hamiltonians. In this paper the scattering theory for such open systems is considered. First it is assumed that a single maximal dissipative operator $A_D$ in a Hilbert space $\\sH$ is used to describe an open quantum system. In this case the minimal self-adjoint dilation $\\widetilde K$ of $A_D$ can be regarded as the Hamiltonian of a closed system which contains the open system $\\{A_D,\\sH\\}$, but since $\\widetilde K$ is necessarily not semibounded from below, this model is difficult to interpret from a physical point of view. In the second part of the paper an open quantum system is modeled with a family $\\{A(\\mu)\\}$ of maximal dissipative operators depending on energy $\\mu$, and it is shown that the open system can be embedded into a closed system where the Hamiltonian is semibounded. Surprisingly it turns out that the corresponding scattering matrix can be completely recovered from scattering matrices of single Pseudo-Hamiltonians as in the first part of the paper. The general results are applied to a class of Sturm-Liouville operators arising in dissipative and quantum transmitting Schr\\"{o}dinger-Poisson systems.

J. Behrndt; M. M. Malamud; H. Neidhardt

2006-10-31T23:59:59.000Z

16

Systems of two heavy quarks with effective field theories  

E-Print Network [OSTI]

I discuss results and applications of QCD nonrelativistic effective field theories for systems with two heavy quarks.

Nora Brambilla

2006-09-22T23:59:59.000Z

17

Exterior Differential Systems for Field Theories  

E-Print Network [OSTI]

Cartan forms and Exterior Differential Systems, set in the state space of field and potential variables taken together with four space-time variables, are formulated for Maxwell, SU(2), SU(3) and SU(4) classical gauge theories minimally coupled to Dirac spinor multiplets. Their Cartan character tables are calculated, showing the EDS, and so the Euler-Lagrange partial differential equations, of the first of these to be well posed. That theory anticipates QED. In the other cases, only if the Dirac fields' conserved currents are suppressed as sources for the Yang-Mills fields is a well posed EDS found. PACS numbers: 02.30.Xx 02.40.Hw 03.50.De 03.50.-z

Estabrook, Frank B

2014-01-01T23:59:59.000Z

18

Electronic excitations in complex systems: beyond density functional theory  

E-Print Network [OSTI]

Electronic excitations in complex systems: beyond density functional theory for real materials . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17 3 Time-dependent density functional theory 19 3.1 The Runge-Gross theorem . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 27 4 Model kernels from many-body perturbation theory 29 4.1 Time-dependent density functional theory

Botti, Silvana

19

Towards a Hamilton-Jacobi Theory for Nonholonomic Mechanical Systems  

E-Print Network [OSTI]

In this paper we obtain a Hamilton-Jacobi theory for nonholonomic mechanical systems. The results are applied to a large class of nonholonomic mechanical systems, the so-called \\v{C}aplygin systems.

D. Iglesias; M. de Leon; D. Martin de Diego

2007-05-25T23:59:59.000Z

20

Effect of decimeter waves on functional state of cardiovascular system, some biochemical and immunological parameters of patients recovering from myocardial infarction  

SciTech Connect (OSTI)

Optimum localization of decimeter wave (DMW) treatment and its intensity was determined to investigate the effect of DMW on functional state of the cardiovascular system, and clinical biochemical parameters of patients with myocardial infarction in the early posthospitalization period. It is assumed that the effect of DMW via the segmented autonomic system leads to marked changes in the systems. With delivery of treatment to the DI-DV region, the effect on the heart occurs first through the autonomic nervous system which is shown by its vagotropic effect.

Sorokina, Y.I.; Poshkus, N.B.; Tupitsina, Y.Y.; Volkova, L.P.; Shubina, A.V.; Krasnikov, V.Y.

1983-06-01T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


21

On the Hamilton-Jacobi Theory for Singular Lagrangian Systems  

E-Print Network [OSTI]

We develop a Hamilton-Jacobi theory for singular lagrangian systems using the Gotay-Nester-Hinds constraint algorithm. The procedure works even if the system has secondary constraints.

Manuel de León; Juan Carlos Marrero; David Martín de Diego; Miguel Vaquero

2012-04-27T23:59:59.000Z

22

Renormalization-group theory of correlated electron systems  

E-Print Network [OSTI]

The thesis applies position-space renormalization-group theory to a variety of correlated electron systems, determining finite-temperature phase diagrams and thermodynamic properties for electron densities both at and away ...

Hinczewski, Michael, 1979-

2005-01-01T23:59:59.000Z

23

Solar system constraints on alternative gravity theories  

E-Print Network [OSTI]

The perihelion precession of planetary orbits and the bending angle of null geodesics are estimated for different gravity theories in string-inspired models. It is shown that, for dilaton coupled gravity, the leading order measure in the angle of bending of light comes purely from vacuum expectation value of the dilaton field which may be interpreted as an indicator of a dominant stringy effect over the curvature effect. We arrive at similar results for spherically symmetric solution in quadratic gravity. We also present the perihelion shift and bending of light in the Einstein-Maxwell-Gauss-Bonnet theory with special reference to the Casimir effect and Damour-Polyakov mechanism. Numerical bounds to different coupling parameters in these models are estimated.

Sumanta Chakraborty; Soumitra Sengupta

2014-01-14T23:59:59.000Z

24

Bayesian Networks and Evidence Theory to Model Complex Systems Reliability  

E-Print Network [OSTI]

Bayesian Networks and Evidence Theory to Model Complex Systems Reliability Ch. SIMON, Ph. WEBER, E.levrat}@cran.uhp-nancy.fr Abstract-- This paper deals with the use of Bayesian Net- works to compute system reliability of complex systems un- der epistemic uncertainty. In the context of incompleteness of reliability data

Paris-Sud XI, Université de

25

An Investigation of the Complex Motions Inherent to Machining Systems via a Discontinuous Systems Theory Approach  

E-Print Network [OSTI]

AN INVESTIGATION OF THE COMPLEX MOTIONS INHERENT TO MACHINING SYSTEMS VIA A DISCONTINUOUS SYSTEMS THEORY APPROACH A Dissertation by BRANDON CHRISTOPHER GEGG Submitted to the Office of Graduate Studies... SYSTEMS VIA A DISCONTINUOUS SYSTEMS THEORY APPROACH A Dissertation by BRANDON CHRISTOPHER GEGG Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree...

Gegg, Brandon C.

2010-07-14T23:59:59.000Z

26

Biochemical transformation of coals  

DOE Patents [OSTI]

A method of biochemically transforming macromolecular compounds found in solid carbonaceous materials, such as coal is provided. The preparation of new microorganisms, metabolically weaned through challenge growth processes to biochemically transform solid carbonaceous materials at extreme temperatures, pressures, pH, salt and toxic metal concentrations is also disclosed. 7 figs.

Lin, M.S.; Premuzic, E.T.

1999-03-23T23:59:59.000Z

27

Density functional theory for self-bound systems  

E-Print Network [OSTI]

The density functional theory is extended to account for self-bound systems. To this end the Hohenberg-Kohn theorem is formulated for the intrinsic density and a Kohn-Sham like procedure for an $N$--body system is derived using the adiabatic approximation to account for the center of mass motion.

Nir Barnea

2007-11-06T23:59:59.000Z

28

Quantum decoherence in the theory of open systems  

E-Print Network [OSTI]

In the framework of the Lindblad theory for open quantum systems, we determine the degree of quantum decoherence of a harmonic oscillator interacting with a thermal bath. It is found that the system manifests a quantum decoherence which is more and more significant in time. We calculate also the decoherence time scale and analyze the transition from quantum to classical behaviour of the considered system.

A. Isar

2007-04-25T23:59:59.000Z

29

apoptotic biochemical signaling: Topics by E-print Network  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Signal Transduction Condensed Matter (arXiv) Summary: We realize a biochemical filtering process by introducing a buffer in a biocatalytic signal-transduction logic system based...

30

Purity of states in the theory of open quantum systems  

E-Print Network [OSTI]

The condition of purity of states for a damped harmonic oscillator is considered in the framework of Lindblad theory for open quantum systems. For a special choice of the environment coefficients, the correlated coherent states are shown to be the only states which remain pure all the time during the evolution of the considered system. These states are also the most stable under evolution in the presence of the environment.

A. Isar

2006-04-28T23:59:59.000Z

31

Differentiating Between Modified Gravity Theories in the Solar System  

E-Print Network [OSTI]

Building on previous work, we re-examine the possibility of testing MOdified Newtonian Dynamics near the saddle points of gravitational potentials in the Solar System, through an extension of the forthcoming LISA Pathfinder mission. We extend present analysis to include quasi-linear formulations of these theories, resulting from fully relativistic modified gravity theories. Using similar quantitative and qualitative tools, we demonstrate that in general, both the instrumental response and typical Signal to Noise Ratios for such a test will be different. Finally we investigate constraints from a negative result and parameterised free functions.

Ali Mozaffari

2014-03-21T23:59:59.000Z

32

Tests of Modified Gravity Theories in the Solar System  

E-Print Network [OSTI]

We review the case for testing preferred acceleration scale theories of gravity (sometimes falling under the guise of MOdified Newtonian Dynamics) in the Solar System using the forthcoming LISA Pathfinder (LPF) mission. Using a combination of analytical and numerical results, we suggest that different types of theory should be detectable using the predicted anomalous tidal stresses effects around the saddle points of the Newtonian gravitational field. The saddle point bubbles expected extent of $\\sim 400$ km are to be contrasted with potential miss parameters of $\\leq 10$ km, making such a test in easy reach of LPF. We also consider routes to constraining our theories from data, based on scenarios of both null and positive results.

Ali Mozaffari

2014-04-01T23:59:59.000Z

33

Poultry Diseases Expert System using Dempster-Shafer Theory  

E-Print Network [OSTI]

Based on World Health Organization (WHO) fact sheet in the 2011, outbreaks of poultry diseases especially Avian Influenza in poultry may raise global public health concerns due to their effect on poultry populations, their potential to cause serious disease in people, and their pandemic potential. In this research, we built a Poultry Diseases Expert System using Dempster-Shafer Theory. In this Poultry Diseases Expert System We describe five symptoms which include depression, combs, wattle, bluish face region, swollen face region, narrowness of eyes, and balance disorders. The result of the research is that Poultry Diseases Expert System has been successfully identifying poultry diseases.

Maseleno, Andino

2012-01-01T23:59:59.000Z

34

E-Print Network 3.0 - adaptive systems theory Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

systems theory Page: << < 1 2 3 4 5 > >> 1 From Adaptive Hypermedia to the Adaptive Web Systems Summary: 1 From Adaptive Hypermedia to the Adaptive Web Systems Peter...

35

Quantitative training system assessments using General Systems Performance Theory  

E-Print Network [OSTI]

provides an overview of the concept of situational awareness and identifies the characteristics that are usually associated ivith a situationally aivare person. A. CBT Systems As ivas mentioned in Chapter I, there is considerable evidence [3, 4...

Kashyap, Sujatha

2000-01-01T23:59:59.000Z

36

Complex geometric optics for symmetric hyperbolic systems I: linear theory  

E-Print Network [OSTI]

We obtain an asymptotic solution for $\\ep \\to 0$ of the Cauchy problem for linear first-order symmetric hyperbolic systems with oscillatory initial values written in the eikonal form of geometric optics with frequency $1/\\ep$, but with complex phases. For the most common linear wave propagation models, this kind on Cauchy problems are well-known in the applied literature and their asymptotic theory, referred to as complex geometric optics, is attracting interest for applications. In this work, which is the first of a series of papers dedicated to complex geometric optics for nonlinear symmetric hyperbolic systems, we develop a rigorous linear theory and set the basis for the subsequent nonlinear analysis.

Omar Maj

2008-02-12T23:59:59.000Z

37

The benchmark of gutzwiller density functional theory in hydrogen systems  

SciTech Connect (OSTI)

We propose an approximate form of the exchange-correlation energy functional for the Gutzwiller density functional theory. It satisfies certain physical constraints in both weak and strong electron correlation limits. We benchmark the Gutzwiller density functional approximation in the hydrogen systems, where the static correlation error is shown to be negligible. The good transferability is demonstrated by applications to the hydrogen molecule and some crystal structures.

Yao, Y.; Wang, Cai-Zhuang; Ho, Kai-Ming

2012-02-23T23:59:59.000Z

38

Geometric Hamilton-Jacobi Theory for Nonholonomic Dynamical Systems  

E-Print Network [OSTI]

The geometric formulation of Hamilton--Jacobi theory for systems with nonholonomic constraints is developed, following the ideas of the authors in previous papers. The relation between the solutions of the Hamilton--Jacobi problem with the symplectic structure defined from the Lagrangian function and the constraints is studied. The concept of complete solutions and their relationship with constants of motion, are also studied in detail. Local expressions using quasivelocities are provided. As an example, the nonholonomic free particle is considered.

J. F. Cariñena; X. Gracia; G. Marmo; E. Martinez; M. C. Muñoz-Lecanda; N. Roman--Roy

2009-08-17T23:59:59.000Z

39

Time-dependent density-functional theory for open systems  

E-Print Network [OSTI]

By introducing the self-energy density functionals for the dissipative interactions between the reduced system and its environment, we develop a time-dependent density-functional theory formalism based on an equation of motion for the Kohn-Sham reduced single-electron density matrix of the reduced system. Two approximate schemes are proposed for the self-energy density functionals, the complete second order approximation and the wide-band limit approximation. A numerical method based on the wide-band limit approximation is subsequently developed and implemented to simulate the steady and transient current through various realistic molecular devices. Simulation results are presented and discussed.

Xiao Zheng; Fan Wang; Chi Yung Yam; Yan Mo; GuanHua Chen

2007-02-27T23:59:59.000Z

40

Biochemical upgrading of oils  

DOE Patents [OSTI]

A process for biochemical conversion of heavy crude oils is provided. The process includes contacting heavy crude oils with adapted biocatalysts. The resulting upgraded oil shows, a relative increase in saturated hydrocarbons, emulsions and oxygenates and a decrease in compounds containing organic sulfur, organic nitrogen and trace metals. Adapted microorganisms which have been modified under challenged growth processes are also disclosed. 121 figs.

Premuzic, E.T.; Lin, M.S.

1999-01-12T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


41

Disformal Theories of Gravity: From the Solar System to Cosmology  

E-Print Network [OSTI]

This paper is concerned with theories of gravity that contain a scalar coupled both conformally and disformally to matter through the metric. By systematically deriving the non-relativistic limit, it is shown that no new non-linear screening mechanisms are present beyond the Vainshtein mechanism and chameleon-like screening. If one includes the cosmological expansion of the universe, disformal effects that are usually taken to be absent can be present in the solar system. When the conformal factor is absent, fifth-forces can be screened on all scales when the cosmological field is slowly-rolling. We investigate the cosmology of these models and use local tests of gravity to place new constraints on the disformal coupling and find $\\mathcal{M}>\\mathcal{O}(\\textrm{eV})$, which is not competitive with laboratory tests. Finally, we discuss the future prospects for testing these theories and the implications for other theories of modified gravity. In particular, the Vainshtein radius of solar system objects can be altered from the static prediction when cosmological time-derivatives are non-negligible.

Jeremy Sakstein

2014-10-20T23:59:59.000Z

42

Quantum tomography meets dynamical systems and bifurcations theory  

SciTech Connect (OSTI)

A powerful tool for studying geometrical problems in Hilbert spaces is developed. We demonstrate the convergence and robustness of our method in every dimension by considering dynamical systems theory. This method provides numerical solutions to hard problems involving many coupled nonlinear equations in low and high dimensions (e.g., quantum tomography problem, existence and classification of Pauli partners, mutually unbiased bases, complex Hadamard matrices, equiangular tight frames, etc.). Additionally, this tool can be used to find analytical solutions and also to implicitly prove the existence of solutions. Here, we develop the theory for the quantum pure state tomography problem in finite dimensions but this approach is straightforwardly extended to the rest of the problems. We prove that solutions are always attractive fixed points of a nonlinear operator explicitly given. As an application, we show that the statistics collected from three random orthonormal bases is enough to reconstruct pure states from experimental (noisy) data in every dimension d ? 32.

Goyeneche, D., E-mail: dardo.goyeneche@cefop.udec.cl [Departamento de Fisíca, Universidad de Concepción, Casilla 160-C, Concepción, Chile and Center for Optics and Photonics, Universidad de Concepción, Casilla 4012, Concepción (Chile); Torre, A. C. de la [Departamento de Física, Universidad Nacional de Mar del Plata, IFIMAR-CONICET, Dean Funes 3350, 7600 Mar del Plata (Argentina)

2014-06-15T23:59:59.000Z

43

Bayesian Ying-Yang System and Theory as A Uni ed Statistical Learning Approach (I)  

E-Print Network [OSTI]

Bayesian Ying-Yang System and Theory as A Uni ed Statistical Learning Approach (I called Bayesian Ying- Yang (BYY) system and theory has been developed by the present author in recent Bayesian Ying-Yang (BYY) system and theory has been developed by the present author 12-16, 20-23, 25

Xu, Lei

44

A General Systems Theory for Rain Formation in Warm Clouds  

E-Print Network [OSTI]

A cumulus cloud model which can explain the observed characteristics of warm rain formation in monsoon clouds is presented. The model is based on classical statistical physical concepts and satisfies the principle of maximum entropy production. Atmospheric flows exhibit selfsimilar fractal fluctuations that are ubiquitous to all dynamical systems in nature, such as physical, chemical, social, etc and are characterized by inverse power law form for power (eddy energy) spectrum signifying long-range space-time correlations. A general systems theory model for atmospheric flows developed by the author is based on the concept that the large eddy energy is the integrated mean of enclosed turbulent (small scale) eddies. This model gives scale-free universal governing equations for cloud growth processes. The model predicted cloud parameters are in agreement with reported observations, in particular, the cloud dropsize distribution. Rain formation can occur in warm clouds within 30minutes lifetime under favourable conditions of moisture supply in the environment.

A. M. Selvam

2014-08-15T23:59:59.000Z

45

Operator renewal theory and mixing rates for dynamical systems with infinite measure  

E-Print Network [OSTI]

Operator renewal theory and mixing rates for dynamical systems with infinite measure Ian Melbourne renewal sequences in the context of infinite ergodic theory. For large classes of dynamical systems technique, operator renewal theory, to obtain precise asymptotics and hence sharp mixing rates

46

Thermal analysis of biochemical systems  

E-Print Network [OSTI]

Scientists, both academic and industrial, develop two main types of drugs: 1) small molecule drugs, which are usually chemically synthesized and are taken orally and 2) large molecule, biotherapeutic, or protein-based ...

McEuen, Scott Jacob

2013-01-01T23:59:59.000Z

47

Complexity within the Air Force acquisition system gaining insight from a theory of collapse  

E-Print Network [OSTI]

Joseph Tainter's theory of societal collapse is applied in an examination of the U.S. Air Force's aircraft acquisition system in order to gain insight into the enterprise's lagging performance. Theories of collapse at both ...

Marticello, Daniel Nicholas, Jr

2012-01-01T23:59:59.000Z

48

Bayesian Ying-Yang System and Theory as A Uni ed Statistical Learning Approach (II)  

E-Print Network [OSTI]

Bayesian Ying-Yang System and Theory as A Uni ed Statistical Learning Approach (II): From), Springer, pp25-42. Abstract. A uni ed statistical learning approach called Bayesian Ying- Yang (BYY) system Bayesian Ying-Yang System and Theory As shown in Fig.1, the BYY system consists of seven components

Xu, Lei

49

Theory: Biological systems organize to maximize entropy production subject to information and biophysicochemical constraints.  

E-Print Network [OSTI]

Theory: Biological systems organize to maximize entropy production subject to information production. While organized structures decrease the entropy of the system, they are maintained by external selection produce biological systems that tend to follow a pathway of maximum entropy production

Vallino, Joseph J.

50

Operator renewal theory and mixing rates for dynamical systems with in nite measure  

E-Print Network [OSTI]

Operator renewal theory and mixing rates for dynamical systems with in#12;nite measure Ian of operator renewal sequences in the context of in#12;nite ergodic theory. For large classes of dynamical for mixing rates. Sarig [37] introduced a powerful new technique, operator renewal theory, to obtain precise

51

Bath Institute for Complex Systems On Landau theory and symmetric energy landscapes for phase  

E-Print Network [OSTI]

BICS Bath Institute for Complex Systems On Landau theory and symmetric energy landscapes for phase://www.bath.ac.uk/math-sci/BICS #12;On Landau theory and symmetric energy landscapes for phase transitions Kai Hormann and Johannes Zimmer Abstract Martensitic phase transformations, Landau theory, energy function, orbit space, geomet

Zimmer, Johannes

52

Systems Oriented Epistemology and Testimony Theories of testimony | A simulation model | Conclusions  

E-Print Network [OSTI]

Systems Oriented Epistemology and Testimony Theories of testimony | A simulation model.S. Zollman Carnegie Mellon University Problem of testimony Theories of testimony | A simulation model University Three views Theories of testimony | A simulation model | Conclusions The views | Two methods in SE

Zollman, Kevin

53

Existence of A Rigorous Density-Functional Theory for Open Electronic Systems  

E-Print Network [OSTI]

We prove that the electron density function of a real physical system can be uniquely determined by its values on any finite subsystem. This establishes the existence of a rigorous density-functional theory for any open electronic system. By introducing a new density functional for dissipative interactions between the reduced system and its environment, we subsequently develop a time-dependent density-functional theory which depends in principle only on the electron density of the reduced system.

Xiao Zheng; Fan Wang; GuanHua Chen

2006-05-11T23:59:59.000Z

54

Geometrical structures of higher-order dynamical systems and field theories  

E-Print Network [OSTI]

In this Thesis we develop the geometric formulations for higher-order autonomous and non-autonomous dynamical systems, and second-order field theories. In all cases, the physical information of the system is given in terms of a Lagrangian function/density, or a Hamiltonian that admits Lagrangian counterpart. These geometric frameworks are used to study several relevant physical examples and applications, such as the Hamilton-Jacobi theory for higher-order mechanical systems, relativistic spin particles and deformation problems in mechanics, and the Korteweg-de Vries equation and other systems in field theory.

Pedro D. Prieto-Martínez

2014-10-28T23:59:59.000Z

55

Biochemical Conversion Pilot Plant (Fact Sheet)  

SciTech Connect (OSTI)

This fact sheet provides information about Biochemical Conversion Pilot Plant capabilities and resources at NREL.

Not Available

2012-06-01T23:59:59.000Z

56

National Bioenergy Center Biochemical Platform Integration Project  

SciTech Connect (OSTI)

April through June 2008 update on activities of the National Bioenergy Center's Biochemical Platform Integration Project.

Not Available

2008-07-01T23:59:59.000Z

57

Simulations of Solar System observations in alternative theories of gravity  

E-Print Network [OSTI]

In this communication, we focus on the possibility to test General Relativity (GR) with radioscience experiments. We present simulations of observables performed in alternative theories of gravity using a software that simulates Range/Doppler signals directly from the space time metric. This software allows one to get the order of magnitude and the signature of the modifications induced by an alternative theory of gravity on radioscience signals. As examples, we present some simulations for the Cassini mission in Post-Einsteinian gravity (PEG) and with Standard Model Extension (SME).

A. Hees; B. Lamine; S. Reynaud; M. -T. Jaekel; C. Le Poncin-Lafitte; V. Lainey; A. Füzfa; J. -M. Courty; V. Dehant; P. Wolf

2013-02-27T23:59:59.000Z

58

Phase space theory of quantum–classical systems with nonlinear and stochastic dynamics  

SciTech Connect (OSTI)

A novel theory of hybrid quantum–classical systems is developed, utilizing the mathematical framework of constrained dynamical systems on the quantum–classical phase space. Both, the quantum and classical descriptions of the respective parts of the hybrid system are treated as fundamental. Therefore, the description of the quantum–classical interaction has to be postulated, and includes the effects of neglected degrees of freedom. Dynamical law of the theory is given in terms of nonlinear stochastic differential equations with Hamiltonian and gradient terms. The theory provides a successful dynamical description of the collapse during quantum measurement. -- Highlights: •A novel theory of quantum–classical systems is developed. •Framework of quantum constrained dynamical systems is used. •A dynamical description of the measurement induced collapse is obtained.

Buri?, Nikola, E-mail: buric@ipb.ac.rs; Popovi?, Duška B.; Radonji?, Milan; Prvanovi?, Slobodan

2014-04-15T23:59:59.000Z

59

Geometric Hamilton-Jacobi theory for higher-order autonomous systems  

E-Print Network [OSTI]

The geometric framework for the Hamilton-Jacobi theory is used to study this theory in the ambient of higher-order mechanical systems, both in the Lagrangian and Hamiltonian formalisms. Thus, we state the corresponding Hamilton-Jacobi equations in these formalisms and apply our results to analyze some particular physical examples.

Leonardo Colombo; Manuel de León; Pedro Daniel Prieto-Martínez; Narciso Román-Roy

2014-05-19T23:59:59.000Z

60

A Practical Theory of Micro-Solar Power Sensor Networks JAEIN JEONG, Cisco Systems  

E-Print Network [OSTI]

9 A Practical Theory of Micro-Solar Power Sensor Networks JAEIN JEONG, Cisco Systems DAVID CULLER Reference Format: Jeong, J. and Culler, D. 2012. A practical theory of micro-solar power sensor networks planning for micro-solar power sensor networks" in Proceedings of the 7th International Conference

California at Berkeley, University of

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


61

Systems Oriented Epistemology and Testimony Theories of testimony | A simulation model | Conclusions  

E-Print Network [OSTI]

Systems Oriented Epistemology and Testimony Theories of testimony | A simulation model | A simulation model | Conclusions Two questions What is our epistemic warrant for believing testimony? Who.S. Zollman Carnegie Mellon University Three views Theories of testimony | A simulation model | Conclusions

Zollman, Kevin

62

A Contraction Theory Approach to Singularly Perturbed Systems with Application to Retroactivity Attenuation  

E-Print Network [OSTI]

In this paper, we revisit standard results for singularly perturbed systems on the infinite time interval by employing tools from nonlinear contraction theory. This allows us to determine explicit bounds both on the rate ...

Del Vecchio, Domitilla

63

Solar System Constraints on a Cosmologically Viable $f(R)$ Theory  

E-Print Network [OSTI]

Recently, a model $f(R)$ theory is proposed \\cite{recent} which is cosmologically viable and distinguishable from $\\Lambda$CDM. We use chameleon mechanism to investigate viability of the model in terms of Solar System experiments.

Yousef Bisabr

2009-12-02T23:59:59.000Z

64

An Information Systems Security Risk Assessment Model Under Dempster- Schafer Theory of Belief Functions  

E-Print Network [OSTI]

This study develops an alternative methodology for the risk analysis of information systems security (ISS), an evidential reasoning approach under the Dempster-Shafer theory of belief functions. The approach has the ...

Sun, Lili; Srivastava, Rajendra P.; Mock, Theodore J.

2006-01-01T23:59:59.000Z

65

A Hamilton-Jacobi Theory for Singular Lagrangian Systems in the Skinner and Rusk Setting  

E-Print Network [OSTI]

We develop a Hamilton-Jacobi theory for singular lagrangian systems in the Skinner-Rusk formalism. Comparisons with the Hamilton-Jacobi problem in the lagrangian and hamiltonian settings are discussed.

Manuel de León; David Martín de Diego; Miguel Vaquero

2012-05-01T23:59:59.000Z

66

Joint density-functional theory for electronic structure of solvated systems  

E-Print Network [OSTI]

We introduce a new form of density functional theory for the {\\em ab initio} description of electronic systems in contact with a molecular liquid environment. This theory rigorously joins an electron density-functional for the electrons of a solute with a classical density-functional theory for the liquid into a single variational principle for the free energy of the combined system. A simple approximate functional predicts, without any fitting of parameters to solvation data, solvation energies as well as state-of-the-art quantum-chemical cavity approaches, which require such fitting.

Sahak Petrosyan; Jean-Francois Briere; David Roundy; T. A. Arias

2007-02-09T23:59:59.000Z

67

Theory of mesonic and dibaryonic excitations in. pi. NN systems  

SciTech Connect (OSTI)

Progress made in developing a ..pi..NN model for describing all NN and ..pi..d reactions up to intermediate energy regions is reported. An accurate ..pi..NN model is the starting point of developing a microscopic description of nuclear phenomena up to the energy region where pion production can occur. The model can be used to carry out many-nucleon calculations, such as the calculations of pion absorption and electroproduction of ..delta.. on nuclei. It reduces to existing nuclear theory in the low energy region. 5 refs., 6 figs.

Lee, T.S.H.

1986-08-01T23:59:59.000Z

68

Exterior Differential Systems for Yang-Mills Theories  

E-Print Network [OSTI]

Exterior differential systems are given, and their Cartan characters calculated, for Maxwell and SU(2)-Yang-Mills equations in dimensions from three to six.

Frank B. Estabrook

2008-12-05T23:59:59.000Z

69

Minimum Resource Characterization of Biochemical Analyses for Digital  

E-Print Network [OSTI]

;2 Lingzhi Luo and Srinivas Akella 1 Introduction Low-cost, portable lab-on-a-chip systems capable of rapid versatile, yet low cost systems. Hence it is important to iden- tify the class of biochemical analyses requirements, towards the design of cost and space-efficient biochips. Mixers and storage units are two primary

Akella, Srinivas

70

Elements of Information Theory for Networked Control Systems  

E-Print Network [OSTI]

-scale systems using digital technology and interacting with the physical world. These include energy systems, communi- cation, and control technologies, to respond to the increased societal need to build large where the generation, transmission, and distribution of energy is made more efficient through

Franceschetti, Massimo

71

Coherent versus measurement feedback: Linear systems theory for quantum information  

E-Print Network [OSTI]

To control a quantum system via feedback, we generally have two options in choosing control scheme. One is the coherent feedback, which feeds the output field of the system, through a fully quantum device, back to manipulate the system without involving any measurement process. The other one is the measurement-based feedback, which measures the output field and performs a real-time manipulation on the system based on the measurement results. Both schemes have advantages/disadvantages, depending on the system and the control goal, hence their comparison in several situation is important. This paper considers a general open linear quantum system with the following specific control goals; back-action evasion (BAE), generation of a quantum non-demolished (QND) variable, and generation of a decoherence-free subsystem (DFS), all of which have important roles in quantum information science. Then some no-go theorems are proven, clarifying that those goals cannot be achieved by any measurement-based feedback control. On the other hand it is shown that, for each control goal, there exists a coherent feedback controller accomplishing the task. The key idea to obtain all the results is system theoretic characterizations of BAE, QND, and DFS in terms of controllability and observability properties or transfer functions of linear systems, which are consistent with their standard definitions.

Naoki Yamamoto

2014-10-10T23:59:59.000Z

72

Multiple capillary biochemical analyzer  

DOE Patents [OSTI]

A multiple capillary analyzer allows detection of light from multiple capillaries with a reduced number of interfaces through which light must pass in detecting light emitted from a sample being analyzed, using a modified sheath flow cuvette. A linear or rectangular array of capillaries is introduced into a rectangular flow chamber. Sheath fluid draws individual sample streams through the cuvette. The capillaries are closely and evenly spaced and held by a transparent retainer in a fixed position in relation to an optical detection system. Collimated sample excitation radiation is applied simultaneously across the ends of the capillaries in the retainer. Light emitted from the excited sample is detected by the optical detection system. The retainer is provided by a transparent chamber having inward slanting end walls. The capillaries are wedged into the chamber. One sideways dimension of the chamber is equal to the diameter of the capillaries and one end to end dimension varies from, at the top of the chamber, slightly greater than the sum of the diameters of the capillaries to, at the bottom of the chamber, slightly smaller than the sum of the diameters of the capillaries. The optical system utilizes optic fibers to deliver light to individual photodetectors, one for each capillary tube. A filter or wavelength division demultiplexer may be used for isolating fluorescence at particular bands. 21 figs.

Dovichi, N.J.; Zhang, J.Z.

1995-08-08T23:59:59.000Z

73

A contact theory for surface tension driven systems Roger A. Sauer 1  

E-Print Network [OSTI]

A contact theory for surface tension driven systems Roger A. Sauer 1 Aachen Institute for Advanced description for the contact of surface tension driven sys- tems. The example system of a liquid droplet liquids or two solids in contact. The surface kinematics, essential to the modeling of surface tension

74

Bayesian Ying-Yang System and Theory as A Uni ed Statistical Learning Approach: (III)  

E-Print Network [OSTI]

Bayesian Ying-Yang System and Theory as A Uni ed Statistical Learning Approach: (III) Models paper of 1] published in this same pro- ceeding, for further interpreting the Bayesian Ying-Yang (BYY system andtheory hasbeen further re ned and improved, but also a general Bayesian Ying-Yang Dependence

Xu, Lei

75

Towards a General Theory of Extremes for Observables of Chaotic Dynamical Systems Valerio Lucarini,  

E-Print Network [OSTI]

Towards a General Theory of Extremes for Observables of Chaotic Dynamical Systems Valerio Lucarini the geometrical properties of a chaotic dynamical system and the distribution of extreme values. We show that the extremes of so-called physical observables are distributed according to the classical generalised Pareto

76

A Wavelet Theory -Based Adaptive Trend Analysis System for Process Monitoring and Diagnosis  

E-Print Network [OSTI]

A Wavelet Theory - Based Adaptive Trend Analysis System for Process Monitoring and Diagnosis Hiranmayee Vedam Venkat Venkatasubramanian* Laboratory for Intelligent Process Systems School of Chemical-ASTRA performs process monitoring and diagnosis. The main contributions of this paper are two fold. A wavelet

Venkatasubramanian, Venkat

77

White noise distribution theory for the Fermion system  

E-Print Network [OSTI]

In this paper, we give the white noise calculus for the Fermion system and prove the Fock expansion. Each continuous linear operator on Fermionic white noise functionals is uniquely represented by the series of integral kernel operators. This series is called the Fock expansion.

Yoshihito Shimada

2005-12-09T23:59:59.000Z

78

Maps for general open quantum systems and a theory of linear quantum error correction  

E-Print Network [OSTI]

We show that quantum subdynamics of an open quantum system can always be described by a Hermitian map, irrespective of the form of the initial total system state. Since the theory of quantum error correction was developed based on the assumption of completely positive (CP) maps, we present a generalized theory of linear quantum error correction, which applies to any linear map describing the open system evolution. In the physically relevant setting of Hermitian maps, we show that the CP-map based version of quantum error correction theory applies without modifications. However, we show that a more general scenario is also possible, where the recovery map is Hermitian but not CP. Since non-CP maps have non-positive matrices in their range, we provide a geometric characterization of the positivity domain of general linear maps. In particular, we show that this domain is convex, and that this implies a simple algorithm for finding its boundary.

A. Shabani; D. A. Lidar

2009-02-14T23:59:59.000Z

79

A semiclassical theory of quantum noise in open chaotic systems  

E-Print Network [OSTI]

We consider the quantum evolution of classically chaotic systems in contact with surroundings. Based on $\\hbar$-scaling of an equation for time evolution of the Wigner's quasi-probability distribution function in presence of dissipation and thermal diffusion we derive a semiclassical equation for quantum fluctuations. This identifies an early regime of evolution dominated by fluctuations in the curvature of the potential due to classical chaos and dissipation. A stochastic treatment of this classical fluctuations leads us to a Fokker-Planck equation which is reminiscent of Kramers' equation for thermally activated processes. This reveals an interplay of three aspects of evolution of quantum noise in weakly dissipative open systems; the reversible Liouville flow, the irreversible chaotic diffusion which is characteristic of the system itself, and irreversible dissipation induced by the external reservoir. It has been demonstrated that in the dissipation-free case a competition between Liouville flow in the contracting direction of phase space and chaotic diffusion sets a critical width in the Wigner function for quantum fluctuations. We also show how the initial quantum noise gets amplified by classical chaos and ultimately equilibrated under the influence of dissipation. We establish that there exists a critical limit to the expansion of phase space. The limit is determined by chaotic diffusion and dissipation. Making use of appropriate quantum-classical correspondence we verify the semiclassical analysis by the fully quantum simulation in a chaotic quartic oscillator.

B. C. Bag; S. Chaudhuri; J. Ray Chaudhuri; D. S. Ray

1998-11-13T23:59:59.000Z

80

Hamilton-Jacobi Theory for Degenerate Lagrangian Systems with Holonomic and Nonholonomic Constraints  

E-Print Network [OSTI]

We extend Hamilton-Jacobi theory to Lagrange-Dirac (or implicit Lagrangian) systems, a generalized formulation of Lagrangian mechanics that can incorporate degenerate Lagrangians as well as holonomic and nonholonomic constraints. We refer to the generalized Hamilton-Jacobi equation as the Dirac-Hamilton-Jacobi equation. For non-degenerate Lagrangian systems with nonholonomic constraints, the theory specializes to the recently developed nonholonomic Hamilton-Jacobi theory. We are particularly interested in applications to a certain class of degenerate nonholonomic Lagrangian systems with symmetries, which we refer to as weakly degenerate Chaplygin systems, that arise as simplified models of nonholonomic mechanical systems; these systems are shown to reduce to non-degenerate almost Hamiltonian systems, i.e., generalized Hamiltonian systems defined with non-closed two-forms. Accordingly, the Dirac-Hamilton-Jacobi equation reduces to a variant of the nonholonomic Hamilton-Jacobi equation associated with the reduced system. We illustrate through a few examples how the Dirac-Hamilton-Jacobi equation can be used to exactly integrate the equations of motion.

Melvin Leok; Tomoki Ohsawa; Diana Sosa

2011-09-27T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


81

Integrating Random Matrix Theory Predictions with Short-Time Dynamical Effects in Chaotic Systems  

E-Print Network [OSTI]

We discuss a modification to Random Matrix Theory eigenstate statistics, that systematically takes into account the non-universal short-time behavior of chaotic systems. The method avoids diagonalization of the Hamiltonian, instead requiring only a knowledge of short-time dynamics for a chaotic system or ensemble of similar systems. Standard Random Matrix Theory and semiclassical predictions are recovered in the limits of zero Ehrenfest time and infinite Heisenberg time, respectively. As examples, we discuss wave function autocorrelations and cross-correlations, and show that significant improvement in accuracy is obtained for simple chaotic systems where comparison can be made with brute-force diagonalization. The accuracy of the method persists even when the short-time dynamics of the system or ensemble is known only in a classical approximation. Further improvement in the rate of convergence is obtained when the method is combined with the correlation function bootstrapping approach introduced previously.

A. Matthew Smith; Lev Kaplan

2010-06-29T23:59:59.000Z

82

Theory and Practice of Cavity RF Test Systems  

SciTech Connect (OSTI)

Over the years Jefferson Lab staff members have performed about 2500 cold cavity tests on about 500 different superconducting cavities. Most of these cavities were later installed in 73 different cryomodules, which were used in three different accelerators. All of the cavities were tested in our vertical test area. About 25% of the cryomodules were tested in our cryomodule test facility and later commissioned in an accelerator. The remainder of the cryomodules were tested and commissioned after they were installed in their respective accelerator. This paper is an overview which should provide a practical background in the RF systems used to test the cavities as well as provide the mathematics necessary to convert the raw pulsed or continuous wave RF signals into useful information such as gradient, quality factor, RF-heat loads and loaded Q?s. Additionally, I will provide the equations necessary for determining the measurement error associated with these values.

Tom Powers

2006-08-28T23:59:59.000Z

83

Physics of Aquatic Systems II, 3. Stable Isotopes -Theory Universitt HeidelbergInstitut fr Umweltphysik Physics of Aquatic Systems II  

E-Print Network [OSTI]

­ Notation and definitions ­ Origin and description of fractionation ­ Fractionating processes ­ Rayleigh distillation Literature: Mook Vol. I, ch. 3 and 4 Physics of Aquatic Systems II, 3. Stable Isotopes - Theory "concentration" or mixing ratio: Fractional abundance of given isotope relative to all isotopes of the element

Aeschbach-Hertig, Werner

84

Stochastic chemical enrichment in metal-poor systems I. Theory  

E-Print Network [OSTI]

A stochastic model of the chemical enrichment of metal-poor systems by core-collapse (Type II) supernovae is presented, allowing for large-scale mixing of the enriched material by turbulent motions and cloud collisions in the interstellar medium. Infall of pristine material is taken into account by following the evolution of the gas density in the medium. Analytical expressions were derived for the number of stars enriched by a given number of supernovae, as well as for the amount of mass with which the ejected material from a supernova is mixed before being locked up in a subsequently formed star. It is shown that for reasonable values of the gas density (~0.1 cm-3) and of the supernova rate (~0.25 kpc-3 Myr-1) of the Galactic halo, the resulting metallicity distributions of the extreme Population II stars show a distinct cut-off at [Fe/H] ~= -4. In fact, by assuming no low-mass Population III stars were able to form out of the primordial interstellar medium, the derived fraction of stars below [Fe/H] = -4 is in agreement with observations. Moreover, the probability is high that even the most metal-poor stars observed to date have been enriched by several contributing supernovae. This partly explains the relatively small star-to-star scatter in many chemical-abundance ratios for stars down to [Fe/H] = -4, as recently found in several observational studies. Contribution from the thermonuclear (Type Ia) supernovae is found to be negligible over almost the entire extremely metal-poor regime. (***abridged***)

T. Karlsson

2005-04-27T23:59:59.000Z

85

A COGNITIVE-SYSTEMIC RECONSTRUCTION OF MASLOW'S THEORY OF SELF-ACTUALIZATION  

E-Print Network [OSTI]

A COGNITIVE-SYSTEMIC RECONSTRUCTION OF MASLOW'S THEORY OF SELF-ACTUALIZATION by Francis Heylighen1-order, cognitive-sys- temic framework. A hierarchy of basic needs is derived from the ur- gency of perturbations: material, cognitive and subjective. Material and/or cognitive incompetence during child- hood create

Toint, Philippe

86

Statistical mechanical theory for steady state systems. V. Nonequilibrium probability density  

E-Print Network [OSTI]

Statistical mechanical theory for steady state systems. V. Nonequilibrium probability density Phil is shown to be much more efficient for the thermal conductivity of a Lennard-Jones fluid than the Green probability densities for hydrodynamic transport, for time-dependent mechanical work, and for nonequilibrium

Attard, Phil

87

Statistical mechanical theory for steady state systems. II. Reciprocal relations and the second entropy  

E-Print Network [OSTI]

Statistical mechanical theory for steady state systems. II. Reciprocal relations and the second.1063/1.1873572 I. INTRODUCTION This is the second in a series of papers on the statistical mechanics of steady for the first energy moment of a Lennard-Jones fluid that develops in response to an applied temperature

Attard, Phil

88

Eliminating Software Task Overestimation Using Economic Game Theory to Create a Competitive Incentive System  

E-Print Network [OSTI]

Eliminating Software Task Overestimation Using Economic Game Theory to Create a Competitive Incentive System T.J. Glazier It is common for software engineers to overestimate the time to successfully is an organizational behavior that is the product of tangible penalties for being late and no incentives for being

McGaughey, Alan

89

NREL: Biomass Research - Biochemical Conversion Projects  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

NREL's projects in biochemical conversion involve three basic steps to convert biomass feedstocks to fuels: Converting biomass to sugar or other fermentation feedstock...

90

774 BIOCHEMICAL SOCIETY TRANSACTIONS Bennett, J. (1983) Biochem. J. 212, 1-13  

E-Print Network [OSTI]

774 BIOCHEMICAL SOCIETY TRANSACTIONS Bennett, J. (1983) Biochem. J. 212, 1-13 Bennett, J. (1984)in Science Publishers, Amsterdam Bennett, J., Steinback,K. E. & Amtzen, C. J. (1980) Proc. Natl. Acad. Sci. U. & Bennett, J. (1981) FEES Kyle, D. J., Staehelin,L. A. & Arntzen, C. J. (1983)Arch. Biochem. Lin, Z

Allen, John F.

91

Dissipativity Theory for Hybrid Systems with Applications to Networked Control Systems.  

E-Print Network [OSTI]

?? This dissertation provides new results for energy-based analysis of systems modeled by switched or hybrid system models. This work is motivated by applications in… (more)

McCourt, Michael J.

2015-01-01T23:59:59.000Z

92

Computing Resources at Chemical and Biochemical Engineering  

E-Print Network [OSTI]

Main Site Dept. of Chemical and Biochemical Engineering, 98 Brett Road Piscataway, NJ 08854-8058 PhoneComputing Resources at Chemical and Biochemical Engineering Note that use of all Rutgers University at: http://rucs.rutgers.edu/acceptable- use.html. Microlab. The PC Microlab (Engineering Room C233

93

Multiscale simulations of biochemically reacting systems  

E-Print Network [OSTI]

Energy barriers for the phosphoryl transfer reaction in the wild-energy barriers for the reorientation of the side-chain of the P- site Ser in the wildEnergy barriers for the phosphoryl transfer reaction in the wild-

Cheng, Yuhui

2007-01-01T23:59:59.000Z

94

Statistical mechanical theory for steady-state systems. III. Heat flow in a Lennard-Jones fluid  

E-Print Network [OSTI]

Statistical mechanical theory for steady-state systems. III. Heat flow in a Lennard-Jones fluid March 2005; accepted 4 May 2005; published online 28 June 2005 A statistical mechanical theory for heat distribution for heat flow down an imposed thermal gradient is tested with simulations of a Lennard-Jones fluid

Attard, Phil

95

Compatibility of Einstein minimally coupled self interacting scalar field theory with the solar system tests of gravity  

E-Print Network [OSTI]

We examine the compatibility of the Einstein minimally coupled self-interacting scalar field theory with the local tests of gravity. We find that apart from the trivial case of the Schwarzschild-de Sitter solution with constant scalar field the theory does not admit any other static solution, which is consistent with the solar system tests of gravity.

A. Bhadra

2008-10-06T23:59:59.000Z

96

Adaptive and context-aware scenarios for technology-enhanced learning system based on a didactical theory  

E-Print Network [OSTI]

Adaptive and context-aware scenarios for technology- enhanced learning system based on a didactical-aware model of scenario based on a didactical theory and closely related to a domain model, a learner model and applications"; ii) the theory in didactic anthropology of knowledge of Chevallard [1]; iii) a hierarchical task

Paris-Sud XI, Université de

97

Frontiers, Opportunities, and Challenges in Biochemical and Chemical...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Frontiers, Opportunities, and Challenges in Biochemical and Chemical Catalysis of CO2. Frontiers, Opportunities, and Challenges in Biochemical and Chemical Catalysis of CO2....

98

2011 Biomass Program Platform Peer Review: Biochemical Conversion...  

Broader source: Energy.gov (indexed) [DOE]

Biochemical Conversion 2011 Biomass Program Platform Peer Review: Biochemical Conversion This document summarizes the recommendations and evaluations provided by an independent...

99

Process Design and Economics for Biochemical Conversion of Lignocellul...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

Biochemical Conversion of Lignocellulosic Biomass to Ethanol: Dilute-Acid Pretreatment and Enzymatic Hydrolysis of Corn Stover Process Design and Economics for Biochemical...

100

Duality and Modularity in Elliptic Integrable Systems and Vacua of N=1* Gauge Theories  

E-Print Network [OSTI]

We study complexified elliptic Calogero-Moser integrable systems. We determine the value of the potential at isolated extrema, as a function of the modular parameter of the torus on which the integrable system lives. We calculate the extrema for low rank B,C,D root systems using a mix of analytical and numerical tools. For so(5) we find convincing evidence that the extrema constitute a vector valued modular form for a congruence subgroup of the modular group. For so(7) and so(8), the extrema split into two sets. One set contains extrema that constitute vector valued modular forms for congruence subgroups, and a second set contains extrema that exhibit monodromies around points in the interior of the fundamental domain. The former set can be described analytically, while for the latter, we provide an analytic value for the point of monodromy for so(8), as well as extensive numerical predictions for the Fourier coefficients of the extrema. Our results on the extrema provide a rationale for integrality properties observed in integrable models, and embed these into the theory of vector valued modular forms. Moreover, using the data we gather on the modularity of complexified integrable system extrema, we analyse the massive vacua of mass deformed N=4 supersymmetric Yang-Mills theories with low rank gauge group of type B,C and D. We map out their transformation properties under the infrared electric-magnetic duality group as well as under triality for N=1* with gauge algebra so(8). We compare the exact massive vacua to those found in a semi-classical analysis, and find surprising properties of the quantum gauge theories.

Antoine Bourget; Jan Troost

2015-01-21T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


101

Towards A Theory of Autonomous Reconstitution of Compromised Cyber-Systems  

SciTech Connect (OSTI)

The ability to maintain mission-critical operations in cyber-systems in the face of disruptions is critical. Faults in cyber systems can come from accidental sources (e.g., natural failure of a component) or deliberate sources (e.g., an intelligent adversary). Natural and intentional manipulation of data, computing, or coordination are the most impactful ways that an attacker can prevent an infrastructure from realizing its mission goals. Under these conditions, the ability to reconstitute critical infrastructure becomes important. Specifically, the question is: Given an intelligent adversary, how can cyber systems respond to keep critical infrastructure operational? In cyber systems, the distributed nature of the system poses serious difficulties in maintaining operations, in part due to the fact that a centralized command and control apparatus is unlikely to provide a robust framework for resilience. Resilience in cyber-systems, in general, has several components, and requires the ability to anticipate and withstand attacks or faults, as well as recover from faults and evolve the system to improve future resilience. The recovery effort (and any subsequent evolution) may require significant reconfiguration of the system (at all levels – hardware, software, services, permissions, etc.) if the system is to be made resilient to further attack or faults. This is especially important in the case of ongoing attacks, where reconfiguration decisions must be taken with care to avoid further compromising the system while maintaining continuity of operations. Collectively, we will label this recovery and evolution process as “reconstitution”. Currently, reconstitution is performed manually, generally after-the-fact, and usually consists of either standing up redundant systems, check-points (rolling back the configuration to a “clean” state), or re-creating the system using “gold-standard” copies. For enterprise systems, such reconstitution may be performed either directly on hardware, or using virtual machines. A significant challenge within this context is the ability to verify that the reconstitution is performed in a manner that renders the cyber-system resilient to ongoing and future attacks or faults. Fundamentally, the need is to determine optimal configuration of the cyber system when a fault is determined to be present. While existing theories for fault tolerance (for example, Byzantine fault tolerance) can guarantee resilience under certain conditions, in practice, these theories can break down in the face of an intelligent adversary. Further, it is difficult, in a dynamically evolving environment, to determine whether the necessary conditions for resilience have been met, resulting in difficulties in achieving resilient operation. In addition, existing theories do not sufficiently take into account the cost for attack and defense (the adversary is generally assumed to have infinite resources and time), hierarchy of importance (all network resources are assumed to be equally important), and the dynamic nature of some attacks (i.e., as the attack evolves, can resilience be maintained?). Alternative approaches to resilience based on a centralized command and control structure suffer from a single-point-failure. This paper presents preliminary research towards concepts for effective autonomous reconstitution of compromised cyber systems. We describe a mathematical framework as a first step towards a theoretical basis for autonomous reconstitution in dynamic cyber-system environments. We then propose formulating autonomous reconstitution as an optimization problem and describe some of the challenges associated with this formulation. This is followed by a brief discussion on potential solutions to these challenges.

Ramuhalli, Pradeep; Halappanavar, Mahantesh; Coble, Jamie B.; Dixit, Mukul

2013-11-12T23:59:59.000Z

102

Solar System planetary orbital motions and f(R) Theories of Gravity  

E-Print Network [OSTI]

In this paper we study the effects of $f(R)$ Theories of Gravity on Solar System gravitational tests. In particular, starting from an exact solution of the field equation in vacuum, in the Palatini formalism, we work out the effects that the modifications to the Newtonian potential would induce on the Keplerian orbital elements of the Solar System planets, and compare them with the latest results in planetary orbit determination from the EPM2004 ephemerides. It turns out that the longitudes of perihelia and the mean longitudes are affected by secular precessions. We obtain the resulting best estimate of the parameter $k$ which, being simply related to the scalar curvature, measures the non linearity of the gravitational theory. We use our results to constrain the cosmological constant and show how $f(R)$ functions can be constrained, in principle. What we obtain suggests that, in agreement with other recent papers, the Solar System experiments are not effective to set such constraints, if compared to the cosmologically relevant values.

Matteo Luca Ruggiero; Lorenzo Iorio

2006-12-14T23:59:59.000Z

103

Design guidelines for optical resonator biochemical sensors  

E-Print Network [OSTI]

In this paper, we propose a design tool for dielectric optical resonator-based biochemical refractometry sensors. Analogous to the widely accepted photodetector figure of merit, the detectivity D*, we introduce a new sensor ...

Kimerling, Lionel C.

104

Tuning Range-Separated Density Functional Theory for Photocatalytic Water Splitting Systems  

E-Print Network [OSTI]

We discuss the applicability of long-range separated density functional theory (DFT) to the prediction of electronic transitions of a particular photocatalytic system based on an Ir(III) photosensitizer (IrPS). Special attention is paid to the charge-transfer properties which are of key importance for the photoexcitation dynamics, but and cannot be correctly described by means of conventional DFT. The optimization of the range-separation parameter is discussed for IrPS including its complexes with electron donors and acceptors used in photocatalysis. Particular attention is paid to the problems arising for a description of medium effects by a polarizable continuum model.

Bokareva, Olga S; Bokarev, Sergey I; Kühn, Oliver

2015-01-01T23:59:59.000Z

105

Complex geometric optics for symmetric hyperbolic systems II: nonlinear theory in one space dimension  

E-Print Network [OSTI]

This is the second part of a work aimed to study complex-phase oscillatory solutions of nonlinear symmetric hyperbolic systems. We consider, in particular, the case of one space dimension. That is a remarkable case, since one can always satisfy the \\emph{naive} coherence condition on the complex phases, which is required in the construction of the approximate solution. Formally the theory applies also in several space dimensions, but the \\emph{naive} coherence condition appears to be too restrictive; the identification of the optimal coherence condition is still an open problem.

Omar Maj

2008-02-12T23:59:59.000Z

106

The harmonic oscillator with dissipation within the theory of open quantum systems  

E-Print Network [OSTI]

Time evolution of the expectation values of various dynamical operators of the harmonic oscillator with dissipation is analitically obtained within the framework of the Lindblad theory for open quantum systems. We deduce the density matrix of the damped harmonic oscillator from the solution of the Fokker-Planck equation for the coherent state representation, obtained from the master equation for the density operator. The Fokker-Planck equation for the Wigner distribution function, subject to either the Gaussian type or the $\\delta$-function type of initial conditions, is also solved by using the Wang-Uhlenbeck method. The obtained Wigner functions are two-dimensional Gaussians with different widths.

A. Isar

2005-08-18T23:59:59.000Z

107

Production of bioenergy and biochemicals from industrial and  

E-Print Network [OSTI]

Production of bioenergy and biochemicals from industrial and agricultural wastewater Largus T biological processing strat- egies that produce bioenergy or biochemicals while treating industrial on wastewater treatment from pollution control to resource exploitation. Many bioprocesses can provide bioenergy

Angenent, Lars T.

108

Contributions to the Theory of Thermostated Systems II: Least Dissipation of Helmholtz Free Energy in Nano-Biology  

E-Print Network [OSTI]

In this paper, we develop further the theory of thermostated systems along the lines of our earlier paper. Two results are highlighted: 1) in the Markov limit of the contracted description, a least dissipation of Helmholtz free energy principle is established; and 2) a detailed account of the appropriateness of this principle for nano-biology, including the evolution of life, is presented.

Ronald F. Fox

2015-03-11T23:59:59.000Z

109

Contributions to the Theory of Thermostated Systems II: Least Dissipation of Helmholtz Free Energy in Nano-Biology  

E-Print Network [OSTI]

In this paper, we develop further the theory of thermostated systems along the lines of our earlier paper. Two results are highlighted: 1) in the Markov limit of the contracted description, a least dissipation of Helmholtz free energy principle is established; and 2) a detailed account of the appropriateness of this principle for nano-biology, including the evolution of life, is presented.

Ronald F. Fox

2015-03-12T23:59:59.000Z

110

E-Print Network 3.0 - aided systems theory Sample Search Results  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Technologies and Information Sciences 49 AABBSSTTRRAACCTT MA, RUIQI. The Effect of In-Vehicle Automation and Reliability on Driver Situation Summary: , etc. In theory, the...

111

Chiral effective field theory analysis of hadronic parity violation in few-nucleon systems  

SciTech Connect (OSTI)

Background: Weak interactions between quarks induce a parity-violating (PV) component in the nucleonnucleon potential, whose effects are currently being studied in a number of experiments involving few-nucleon systems. In the present work, we reconsider the derivation of this PV component within a chiral effective field theory (chiEFT) framework. Purpose: The objectives of the present work are twofold. The first is to perform a detailed analysis of the PV nucleon-nucleon potential up to next-to-next-to-leading (N2LO) order in the chiral expansion, in particular, by determining the number of independent low-energy constants (LECs) at N2LO. The second objective is to investigate PV effects in a number of few-nucleon observables, including the #2; p-p longitudinal asymmetry, the neutron spin rotation in #2;n-p and #2;n-d scattering, and the longitudinal asymmetry in the {sup 3}He(#2;{vector n},p){sup 3}H chargeexchange reaction. Methods: The chiEFT PV potential includes one-pion-exchange, two-pion-exchange, and contact terms as well as 1/M (M being the nucleon mass) nonstatic corrections. Dimensional regularization is used to renormalize pion loops. The wave functions for the A = 2?-4 nuclei are obtained by using strong two- and three-body potentials also derived, for consistency, from chiEFT. In the case of the A = 3?-4 systems, the wave functions are computed by expanding on a hyperspherical harmonics functions basis. Results: We find that the PV potential at N2LO depends on six LECs: the pion-nucleon PV coupling constant h^1_pi and five parameters multiplying contact interactions. An estimate for the range of values of the various LECs is provided by using available experimental data, and these values are used to obtain predictions for the other PV observables. Conclusions: The chiEFT approach provides a very satisfactory framework to analyze PV effects in few-nucleon systems.

Viviani, Michele [INFN; Baroni, Alessandro [ODU; Girlanda, Luca [Lecce U.; Kievsky, Alejandro [Pisa U,; Marcucci, Laura E. [Pisa U,; Schiavilla, Rocco [ODU, JLAB

2014-06-01T23:59:59.000Z

112

The importance of nonlinear fluid response in joint density-functional theory studies of battery systems  

E-Print Network [OSTI]

Delivering the full benefits of first principles calculations to battery materials demands the development of accurate and computationally-efficient electronic structure methods that incorporate the effects of the electrolyte environment and electrode potential. Realistic electrochemical interfaces containing polar surfaces are beyond the regime of validity of existing continuum solvation theories developed for molecules, due to the presence of significantly stronger electric fields. We present an ab initio theory of the nonlinear dielectric and ionic response of solvent environments within the framework of joint density-functional theory, with precisely the same optimizable parameters as conventional polarizable continuum models. We demonstrate that the resulting nonlinear theory agrees with the standard linear models for organic molecules and metallic surfaces under typical operating conditions. However, we find that the saturation effects in the rotational response of polar solvent molecules, inherent to o...

Gunceler, Deniz; Sundararaman, Ravishankar; Schwarz, Kathleen A; Arias, T A

2013-01-01T23:59:59.000Z

113

Generalization of internal Density Functional Theory and Kohn-Sham scheme to multicomponent systems, and link with traditional DFT  

E-Print Network [OSTI]

We generalize the recently developped "internal" Density Functional Theory (DFT) and Kohn-Sham scheme to multicomponent systems. We obtain a general formalism, applicable for the description of multicomponent self-bound systems (as molecules where the nuclei are treated explicitely, atomic nuclei and mix of 3He and 4He droplets), where the fundamental translational symmetry has been treated correctly. The main difference with traditional DFT is the explicit inclusion of center-of-mass correlations in the functional. A large part of the paper is dedicated to the application to molecules, which permits among other to clarify the approximations that underly traditional DFT.

Jeremie Messud

2011-11-21T23:59:59.000Z

114

Microscopic theory of sound propagation in the superfluid {sup 3}He-aerogel system  

SciTech Connect (OSTI)

We present a theory of sound propagation in superfluid {sup 3}He confined in aerogel, taking dragged aerogel motion into account. The superfluid dynamics coupled with the aerogel motion is formulated by use of the Keldysh Green's function for weak-coupling superfluid Fermi liquid. We apply the theory to the hydrodynamic regime and calculate the attenuation of a hydrodynamic longitudinal sound mode, the so-called fast mode. The result is compared to the acoustic experiment reported by the Northwestern University group [R. Nomura, G. Gervais, T. M. Haard, Y. Lee, N. Mulders, and W. P. Halperin, Phys. Rev. Lett. 85, 4325 (2000); G. Gervais, R. Nomura, T. M. Haard, Y. Lee, N. Mulders, and W. P. Halperin, J. Low Temp. Phys. 122, 1 (2001)]. We find reasonable agreement between the theory and the experiment.

Higashitani, S.; Miura, M.; Yamamoto, M.; Nagai, K. [Faculty of Integrated Arts and Sciences, Hiroshima University, Kagamiyama 1-7-1, Higashi-Hiroshima 739-8521 (Japan)

2005-04-01T23:59:59.000Z

115

A numerical study of crack initiation in a bcc iron system based on dynamic bifurcation theory  

SciTech Connect (OSTI)

Crack initiation under dynamic loading conditions is studied under the framework of dynamic bifurcation theory. An atomistic model for BCC iron is considered to explicitly take into account the detailed molecular interactions. To understand the strain-rate dependence of the crack initiation process, we first obtain the bifurcation diagram from a computational procedure using continuation methods. The stability transition associated with a crack initiation, as well as the connection to the bifurcation diagram, is studied by comparing direct numerical results to the dynamic bifurcation theory [R. Haberman, SIAM J. Appl. Math. 37, 69–106 (1979)].

Li, Xiantao, E-mail: xli@math.psu.edu [Pennsylvania State University, University Park, Pennsylvania 16802 (United States)

2014-10-28T23:59:59.000Z

116

Biochemical Production of Ethanol from Corn Stover: 2007 State...  

Energy Savers [EERE]

Process Design and Economics for Biochemical Conversion of Lignocellulosic Biomass to Ethanol: Dilute-Acid Pretreatment and Enzymatic Hydrolysis of Corn Stover Process...

117

Leveraging Post-Translational Phosphopantetheinylation as a Versatile Biochemical Tool /  

E-Print Network [OSTI]

calf intestinal phosphatase (CIP) (Worthington Biochemicals,dissociation constants. CIP (100 U at 3800 U/mL) was addedconcentration. Incubation of CIP-treated and untreated Sfp

Kosa, Nicolas M.

2013-01-01T23:59:59.000Z

118

Modeling Tomorrow's Biorefinery--the NREL Biochemical Pilot Plant  

SciTech Connect (OSTI)

Brochure describing the capabilities of NREL's Biochemical Pilot Plant. In this facility, researchers test ideas for creating high-value products from cellulosic biomass.

Not Available

2008-03-01T23:59:59.000Z

119

Can bio-inspired information processing steps be realized as synthetic biochemical processes?  

E-Print Network [OSTI]

We consider possible designs and experimental realiza-tions in synthesized rather than naturally occurring bio-chemical systems of a selection of basic bio-inspired information processing steps. These include feed-forward loops, which have been identified as the most common information processing motifs in many natural pathways in cellular functioning, and memory-involving processes, specifically, associative memory. Such systems should not be designed to literally mimic nature. Rather, we can be guided by nature's mechanisms for experimenting with new information/signal processing steps which are based on coupled biochemical reactions, but are vastly simpler than natural processes, and which will provide tools for the long-term goal of understanding and harnessing nature's information processing paradigm. Our biochemical processes of choice are enzymatic cascades because of their compatibility with physiological processes in vivo and with electronics (e.g., electrodes) in vitro allowing for networking and interfacing of enzyme-catalyzed processes with other chemical and biochemical reactions. In addition to designing and realizing feed-forward loops and other processes, one has to develop approaches to probe their response to external control of the time-dependence of the input(s), by measuring the resulting time-dependence of the output. The goal will be to demonstrate the expected features, for example, the delayed response and stabilizing effect of the feed-forward loops.

Vladimir Privman; Evgeny Katz

2014-11-07T23:59:59.000Z

120

A TYPE REDUCTION THEORY FOR SYSTEMS WITH REPLICATED TOMASZ MAZUR AND GAVIN LOWE  

E-Print Network [OSTI]

of processes in the network. We use CSP as our formalism. We present a type reduction theory, which operational semantics for CSP processes that satisfy certain normality requirements, and we provide a set to verify that a nuclear power plant never blows up, for example. 1998 ACM Subject Classification: D.1.3, D

Oxford, University of

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


121

Strategic Structural Reorganization in Multi-agent Systems Inspired by Social Organization Theory  

E-Print Network [OSTI]

Autonomic systems, capable of adaptive behavior, are envisioned as a solution for maintaining large, complex, real-time computing systems that are situated in dynamic and open environments. These systems are subject to ...

Nematollahi Mahani, Maryamossadat

2012-08-31T23:59:59.000Z

122

Generic Mechanism of Optimal Energy Transfer Efficiency: A Scaling Theory of the Mean First Passage Time in Exciton Systems  

E-Print Network [OSTI]

An asymptotic scaling theory is presented using the conceptual basis of trapping-free subspace (i.e., orthogonal subspace) to establish the generic mechanism of optimal efficiency of excitation energy transfer (EET) in light-harvesting systems. Analogous to Kramers' turnover in classical rate theory, the enhanced efficiency in the weak damping limit and the suppressed efficiency in the strong damping limit define two asymptotic scaling regimes, which are interpolated to predict the functional form of optimal efficiency of the trapping-free subspace. In the presence of static disorder, the scaling law of transfer time with respect to dephasing rate changes from linear to square root, suggesting a weaker dependence on the environment. Though formulated in the context of EET, the analysis and conclusions apply in general to open quantum processes, including electron transfer, fluorescence emission, and heat conduction.

Wu, Jianlan; Silbey, Robert J

2013-01-01T23:59:59.000Z

123

Generic Mechanism of Optimal Energy Transfer Efficiency: A Scaling Theory of the Mean First Passage Time in Exciton Systems  

E-Print Network [OSTI]

An asymptotic scaling theory is presented using the conceptual basis of trapping-free subspace (i.e., orthogonal subspace) to establish the generic mechanism of optimal efficiency of excitation energy transfer (EET) in light-harvesting systems. Analogous to Kramers' turnover in classical rate theory, the enhanced efficiency in the weak damping limit and the suppressed efficiency in the strong damping limit define two asymptotic scaling regimes, which are interpolated to predict the functional form of optimal efficiency of the trapping-free subspace. In the presence of static disorder, the scaling law of transfer time with respect to dephasing rate changes from linear to square root, suggesting a weaker dependence on the environment. Though formulated in the context of EET, the analysis and conclusions apply in general to open quantum processes, including electron transfer, fluorescence emission, and heat conduction.

Jianlan Wu; Jianshu Cao; Robert J. Silbey

2012-07-26T23:59:59.000Z

124

Putting in perspective human-machine system theory and modeling: from theoretical biology to artifacts  

E-Print Network [OSTI]

there is a strong need of reliability and consistency from modeling, development and life cycle systems. A main and organization from human-machine systems to socio- technical systems especially for safety and life critical methodologies and ergonomics of systems design. Current and future technical developments for enhancing human

Paris-Sud XI, Université de

125

PRODIAG: Combined expert system/neural network for process fault diagnosis. Volume 1, Theory  

SciTech Connect (OSTI)

The function of the PRODIAG code is to diagnose on-line the root cause of a thermal-hydraulic (T-H) system transient with trace back to the identification of the malfunctioning component using the T-H instrumentation signals exclusively. The code methodology is based on the Al techniques of automated reasoning/expert systems (ES) and artificial neural networks (ANN). The research and development objective is to develop a generic code methodology which would be plant- and T-H-system-independent. For the ES part the only plant or T-H system specific code requirements would be implemented through input only and at that only through a Piping and Instrumentation Diagram (PID) database. For the ANN part the only plant or T-H system specific code requirements would be through the ANN training data for normal component characteristics and the same PID database information. PRODIAG would, therefore, be generic and portable from T-H system to T-H system and from plant to plant without requiring any code-related modifications except for the PID database and the ANN training with the normal component characteristics. This would give PRODIAG the generic feature which numerical simulation plant codes such as TRAC or RELAP5 have. As the code is applied to different plants and different T-H systems, only the connectivity information, the operating conditions and the normal component characteristics are changed, and the changes are made entirely through input. Verification and validation of PRODIAG would, be T-H system independent and would be performed only ``once``.

Reifman, J.; Wei, T.Y.C.; Vitela, J.E.

1995-09-01T23:59:59.000Z

126

Multiple capillary biochemical analyzer with barrier member  

DOE Patents [OSTI]

A multiple capillary biochemical analyzer is disclosed for sequencing DNA and performing other analyses, in which a set of capillaries extends from wells in a microtiter plate into a cuvette. In the cuvette the capillaries are held on fixed closely spaced centers by passing through a sandwich construction having a pair of metal shims which squeeze between them a rubber gasket, forming a leak proof seal for an interior chamber in which the capillary ends are positioned. Sheath fluid enters the chamber and entrains filament sample streams from the capillaries. The filament sample streams, and sheath fluid, flow through aligned holes in a barrier member spaced close to the capillary ends, into a collection chamber having a lower glass window. The filament streams are illuminated above the barrier member by a laser, causing them to fluoresce. The fluorescence is viewed end-on by a CCD camera chip located below the glass window. The arrangement ensures an equal optical path length from all fluorescing spots to the CCD chip and also blocks scattered fluorescence illumination, providing more uniform results and an improved signal-to-noise ratio. 12 figs.

Dovichi, N.J.; Zhang, J.Z.

1996-10-22T23:59:59.000Z

127

The theory of diversity and redundancy in information system security : LDRD final report.  

SciTech Connect (OSTI)

The goal of this research was to explore first principles associated with mixing of diverse implementations in a redundant fashion to increase the security and/or reliability of information systems. Inspired by basic results in computer science on the undecidable behavior of programs and by previous work on fault tolerance in hardware and software, we have investigated the problem and solution space for addressing potentially unknown and unknowable vulnerabilities via ensembles of implementations. We have obtained theoretical results on the degree of security and reliability benefits from particular diverse system designs, and mapped promising approaches for generating and measuring diversity. We have also empirically studied some vulnerabilities in common implementations of the Linux operating system and demonstrated the potential for diversity to mitigate these vulnerabilities. Our results provide foundational insights for further research on diversity and redundancy approaches for information systems.

Mayo, Jackson R. (Sandia National Laboratories, Livermore, CA) [Sandia National Laboratories, Livermore, CA; Torgerson, Mark Dolan; Walker, Andrea Mae; Armstrong, Robert C. (Sandia National Laboratories, Livermore, CA) [Sandia National Laboratories, Livermore, CA; Allan, Benjamin A. (Sandia National Laboratories, Livermore, CA) [Sandia National Laboratories, Livermore, CA; Pierson, Lyndon George

2010-10-01T23:59:59.000Z

128

Statistical mechanical theory for the structure of steady state systems: Application to a Lennard-Jones fluid with applied temperature gradient  

E-Print Network [OSTI]

Statistical mechanical theory for the structure of steady state systems: Application to a Lennard-Jones fluid with applied temperature gradient Phil Attard School of Chemistry F11, University of Sydney, New statistical mechanics for inhomogeneous systems may now be applied to determining the structure

Attard, Phil

129

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Foaming Options · Compressed Air Foam Systems (CAFS) · Foam Blower · Foam Generator · Nozzle Systems #12;Disposal: Science and Theory Compressed ­ Industry owned response team #12;Disposal: Science and Theory Commercial CAFS for Poultry · Poultry

Benson, Eric R.

130

Canonical Duality-Triality Theory: Bridge Between Nonconvex Analysis/Mechanics and Global Optimization in Complex Systems  

E-Print Network [OSTI]

Canonical duality-triality is a breakthrough methodological theory, which can be used not only for modeling complex systems within a unified framework, but also for solving a wide class of challenging problems from real-world applications. This paper presents a brief review on this theory, its philosophical origin, physics foundation, and mathematical statements in both finite and infinite dimensional spaces, with emphasizing on its role for bridging the gap between nonconvex analysis/mechanics and global optimization. Special attentions are paid on unified understanding the fundamental difficulties in large deformation mechanics, bifurcation/chaos in nonlinear science, and the NP-hard problems in global optimization, as well as the theorems, methods, and algorithms for solving these challenging problems. Misunderstandings and confusions on some basic concepts, such as objectivity, nonlinearity, Lagrangian, and generalized convexities are discussed and classified. Breakthrough from recent challenges and conceptual mistakes by M. Voisei, C. Zalinescu and his co-worker are addressed. Some open problems and future works in global optimization and nonconvex mechanics are proposed.

David Y Gao; Ning Ruan; Vittorio Latorre

2014-11-26T23:59:59.000Z

131

Interpretation of the Tadpole VV29 Merging Galaxy System using Hydro-Gravitational Theory  

E-Print Network [OSTI]

Hubble Space Telescope (HST/ACS) images of the galaxy merger Tadpole are interpreted using the hydro-gravitational theory of Gibson 1996-2000 (HGT) that predicts galaxy masses within about 100 kpc are dominated by dark halos of planetary mass primordial-fog-particles (PFPs) in dark proto-globular-star-clusters (PGCs). According to our interpretation, stars and young-globular-clusters (YGCs) appear out of the dark as merging galaxy components VV29cdef move through the baryonic-dark-matter halo of the larger galaxy VV29a creating luminous star-wakes. Frozen PFP planets are evaporated by radiation and tidal forces of the intruders. Friction from the gas accelerates an accretional cascade of PFPs to form larger planets, stars and YGCs of the filamentary galaxy VV29b. Star-wakes show that galaxy VV29c, identified as a blue dwarf by radio telescope observations of gas density and velocity (Briggs et al. 2001), with companions VV29def entered the dark halo of the larger VV29a galaxy at a radius 130 kpc and then spiraled in on different tracks toward frictional capture by the VV29a core. A previously dark dwarf galaxy is identified from a Keck spectrographic study showing a VV29c star-wake dense cluster of YGCs aligned to 1 degree in a close straight row (Tran et al. 2003).

Carl H. Gibson; Rudolph E. Schild

2003-05-03T23:59:59.000Z

132

{gamma} parameter and Solar System constraint in chameleon-Brans-Dicke theory  

SciTech Connect (OSTI)

The post Newtonian parameter is considered in the chameleon-Brans-Dicke model. In the first step, the general form of this parameter and also effective gravitational constant is obtained. An arbitrary function for f({Phi}), which indicates the coupling between matter and scalar field, is introduced to investigate validity of solar system constraint. It is shown that the chameleon-Brans-Dicke model can satisfy the solar system constraint and gives us an {omega} parameter of order 10{sup 4}, which is in comparable to the constraint which has been indicated in [19].

Saaidi, Kh.; Mohammadi, A.; Sheikhahmadi, H. [Department of Physics, Faculty of Science, University of Kurdistan, Sanandaj (Iran, Islamic Republic of)

2011-05-15T23:59:59.000Z

133

Field theory and weak Euler-Lagrange equation for classical particle-field systems  

SciTech Connect (OSTI)

It is commonly believed that energy-momentum conservation is the result of space-time symmetry. However, for classical particle-field systems, e.g., Klimontovich-Maxwell and Klimontovich- Poisson systems, such a connection hasn't been formally established. The difficulty is due to the fact that particles and the electromagnetic fields reside on different manifolds. To establish the connection, the standard Euler-Lagrange equation needs to be generalized to a weak form. Using this technique, energy-momentum conservation laws that are difficult to find otherwise can be systematically derived.

Qin, Hong [PPPL; Burby, Joshua W [PPPL; Davidson, Ronald C [PPPL

2014-10-01T23:59:59.000Z

134

Analysis of robustness and stochasticity in biochemical networks  

E-Print Network [OSTI]

Cells are constantly faced with the challenge of functioning reliably while being subject to unpredictable changes from within and outside. Here, I present two studies in which I analyze how biochemical circuits that ...

Ong, Mei-Lyn

2012-01-01T23:59:59.000Z

135

Density functional theory and Kohn-Sham scheme for self-bound systems  

E-Print Network [OSTI]

We demonstrate how the separation of the total energy of a self-bound system into a functional of the internal one-body Fermionic density and a function of an arbitrary wave vector describing the center-of-mass kinetic energy can be used to set-up an "internal" Kohn-Sham scheme.

J. Messud; M. Bender; E. Suraud

2009-11-10T23:59:59.000Z

136

Hamilton-Jacobi theory for one dimensional autonomous systems using parametric transformations  

E-Print Network [OSTI]

A necessary and sufficient condition for a parameter transformation that leaves invariant the energy of a one dimensional autonomous system is obtained. Using a parameter transformation the Hamilton-Jacobi equation is solved by a quadrature. An example of this approach is given.

G. Gonzalez

2005-01-22T23:59:59.000Z

137

Particle transport in low-energy ventilation systems. Part 1: theory of steady states  

E-Print Network [OSTI]

of the global population. According to the Energy Information Administration (http://www.eia.doe.gov/) the US of this energy is spent on ventilation of buildings with summer time cooling account for almost 10% of the US total energy budget. To reduce energy consumption various low-energy systems such as displacement

Bolster, Diogo

138

Theory for hydrostatic gas journal bearings for micro-electro-mechanical systems  

E-Print Network [OSTI]

The goal of the MIT micro-engine project is to develop high-speed rotating Power MEMS (Micro-Electro-Mechanical Systems) using computer chip fabrication technologies. To produce high power (10-50 W) in a small volume (less ...

Liu, Lixian, Ph. D. Massachusetts Institute of Technology

2005-01-01T23:59:59.000Z

139

Biochemical changes in speckled trout (Cynoscion nebulosus) preserved with ice  

E-Print Network [OSTI]

BIOCHEMICAL CHANGES IN SPECKLED TROUT (CYNOSCION NEBULOSUS) PRESERVED WITH ICE A Thesis by JAMES DONALD GLOVER Approved as to style and content by: (C irman of Committee) emb ) (Head of Depa tment) (Member ) August 1970 ABSTRACT... Biochemical Changes in Speckled Trout (Cynoscion Nebulosus) Preserved with Ice. (August 1970) James Donald Glover, B. S. , Texas A&M University Directed by: Bryant F. Cobb III One hundred-sixty speckled trout were purchased from retail fish markets...

Glover, James Donald

1970-01-01T23:59:59.000Z

140

Introduction to the application of the dynamical systems theory in the study of the dynamics of cosmological models of dark energy  

E-Print Network [OSTI]

The theory of the dynamical systems is a very complex subject which has brought several surprises in the recent past in connection with the theory of chaos and fractals. The application of the tools of the dynamical systems in cosmological settings is less known in spite of the amount of published scientific papers on this subject. In this paper a -- mostly pedagogical -- introduction to the application in cosmology of the basic tools of the dynamical systems theory is presented. It is shown that, in spite of their amazing simplicity, these allow to extract essential information on the asymptotic dynamics of a wide variety of cosmological models. The power of these tools is illustrated within the context of the so called $\\Lambda$CDM and scalar field models of dark energy. This paper is suitable for teachers, undergraduate and postgraduate students from physics and mathematics disciplines.

García-Salcedo, Ricardo; Horta-Rangel, Francisco A; Quiros, Israel; Sanchez-Guzmán, Daniel

2015-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


141

Signal and System Theory II, FS 2014 Prof. J. Lygeros Automatic Control Laboratory  

E-Print Network [OSTI]

in other words f(0) = Cx0 = 0 f (0) = CAx0 = 0 ... fn-1 (0) = CAn-1 x0 = 0 fn (0) = CAn x0 = 0 ... (3) From, . . .. Therefore, if Cx0 = CAx0 = . . . = CAn-1 x0 = 0, because of linearity, we also have CAn+k x0 = 0 for all k reduced system f(0) = Cx0 = 0 f (0) = CAx0 = 0 ... fn-1 (0) = CAn-1 x0 = 0, (4) which, in turn

Lygeros, John

142

National Bioenergy Center Biochemical Platform Integration Project: Quarterly Update #23, April-June 2009  

SciTech Connect (OSTI)

April to June, 2009 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter.

Schell, D.

2009-08-01T23:59:59.000Z

143

National Bioenergy Center Biochemical Platform Integration Project: Quarterly Update #24, July-September 2009  

SciTech Connect (OSTI)

July to September, 2009 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter.

Schell, D.

2009-10-01T23:59:59.000Z

144

National Bioenergy Center Biochemical Platform Integration Project: Quarterly Update #22, January - March 2009  

SciTech Connect (OSTI)

January to March, 2009 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter.

Not Available

2009-04-01T23:59:59.000Z

145

National Bioenergy Center Biochemical Platform Integration Project: Quarterly Update #20, July-September 2008  

SciTech Connect (OSTI)

July to September, 2008 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter.

Schell, D. J.

2008-12-01T23:59:59.000Z

146

National Bioenergy Center Biochemical Platform Integration Project: Quarterly Update #25, October - December 2009  

SciTech Connect (OSTI)

October to December, 2009 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter.

Schell, D.

2010-01-01T23:59:59.000Z

147

Makai Ocean Engineering, Inc. Otec Plume Biochemical Simulation of a 100MW  

E-Print Network [OSTI]

the Physical and Biochemical Influence of Ocean Thermal Energy Conversion Plant Discharges into their Adjacent

148

Fundamental-measure density functional theory study of the crystal-melt interface of the hard sphere system  

E-Print Network [OSTI]

Fundamental-measure density functional theory study of the crystal-melt interface of the hard density functional theory. The equilibrium interfacial density profiles and interfacial free energies were value is 0.6 5,10 . For the past two decades a number of density functional theories were developed

Song, Xueyu

149

Recent results in the theory of the three-nucleon systems  

SciTech Connect (OSTI)

This paper concentrates on calculational results obtained by the Los Alamos-Iowa Faddeev group and on related calculations. Most of the interest of this group has centered on the Helium 3 and Hydrogen 3 ground states, including the effects of the Coulomb interactions between the two protons in Helium 3. Recent progress in treating the alpha particle is reported and zero energy n-d and p-d scattering and an improved understanding of the scattering lengths for these systems are also discussed. Simple physical pictures for these results are presented where possible. 54 refs., 9 figs. (DWL)

Friar, J.L.

1987-06-01T23:59:59.000Z

150

Global solutions of restricted open-shell Hartree-Fock theory from semidefinite programming with applications to strongly correlated quantum systems  

SciTech Connect (OSTI)

We present a density matrix approach for computing global solutions of restricted open-shell Hartree-Fock theory, based on semidefinite programming (SDP), that gives upper and lower bounds on the Hartree-Fock energy of quantum systems. While wave function approaches to Hartree-Fock theory yield an upper bound to the Hartree-Fock energy, we derive a semidefinite relaxation of Hartree-Fock theory that yields a rigorous lower bound on the Hartree-Fock energy. We also develop an upper-bound algorithm in which Hartree-Fock theory is cast as a SDP with a nonconvex constraint on the rank of the matrix variable. Equality of the upper- and lower-bound energies guarantees that the computed solution is the globally optimal solution of Hartree-Fock theory. The work extends a previously presented method for closed-shell systems [S. Veeraraghavan and D. A. Mazziotti, Phys. Rev. A 89, 010502–R (2014)]. For strongly correlated systems the SDP approach provides an alternative to the locally optimized Hartree-Fock energies and densities with a certificate of global optimality. Applications are made to the potential energy curves of C{sub 2}, CN, Cr {sub 2}, and NO {sub 2}.

Veeraraghavan, Srikant; Mazziotti, David A., E-mail: damazz@uchicago.edu [Department of Chemistry and The James Franck Institute, The University of Chicago, Chicago, Illinois 60637 (United States)

2014-03-28T23:59:59.000Z

151

Self-consistent field theory based molecular dynamics with linear system-size scaling  

SciTech Connect (OSTI)

We present an improved field-theoretic approach to the grand-canonical potential suitable for linear scaling molecular dynamics simulations using forces from self-consistent electronic structure calculations. It is based on an exact decomposition of the grand canonical potential for independent fermions and does neither rely on the ability to localize the orbitals nor that the Hamilton operator is well-conditioned. Hence, this scheme enables highly accurate all-electron linear scaling calculations even for metallic systems. The inherent energy drift of Born-Oppenheimer molecular dynamics simulations, arising from an incomplete convergence of the self-consistent field cycle, is circumvented by means of a properly modified Langevin equation. The predictive power of the present approach is illustrated using the example of liquid methane under extreme conditions.

Richters, Dorothee [Institute of Mathematics and Center for Computational Sciences, Johannes Gutenberg University Mainz, Staudinger Weg 9, D-55128 Mainz (Germany)] [Institute of Mathematics and Center for Computational Sciences, Johannes Gutenberg University Mainz, Staudinger Weg 9, D-55128 Mainz (Germany); Kühne, Thomas D., E-mail: kuehne@uni-mainz.de [Institute of Physical Chemistry and Center for Computational Sciences, Johannes Gutenberg University Mainz, Staudinger Weg 7, D-55128 Mainz (Germany); Technical and Macromolecular Chemistry, University of Paderborn, Warburger Str. 100, D-33098 Paderborn (Germany)

2014-04-07T23:59:59.000Z

152

Potential and flux field landscape theory. II. Non-equilibrium thermodynamics of spatially inhomogeneous stochastic dynamical systems  

SciTech Connect (OSTI)

We have established a general non-equilibrium thermodynamic formalism consistently applicable to both spatially homogeneous and, more importantly, spatially inhomogeneous systems, governed by the Langevin and Fokker-Planck stochastic dynamics with multiple state transition mechanisms, using the potential-flux landscape framework as a bridge connecting stochastic dynamics with non-equilibrium thermodynamics. A set of non-equilibrium thermodynamic equations, quantifying the relations of the non-equilibrium entropy, entropy flow, entropy production, and other thermodynamic quantities, together with their specific expressions, is constructed from a set of dynamical decomposition equations associated with the potential-flux landscape framework. The flux velocity plays a pivotal role on both the dynamic and thermodynamic levels. On the dynamic level, it represents a dynamic force breaking detailed balance, entailing the dynamical decomposition equations. On the thermodynamic level, it represents a thermodynamic force generating entropy production, manifested in the non-equilibrium thermodynamic equations. The Ornstein-Uhlenbeck process and more specific examples, the spatial stochastic neuronal model, in particular, are studied to test and illustrate the general theory. This theoretical framework is particularly suitable to study the non-equilibrium (thermo)dynamics of spatially inhomogeneous systems abundant in nature. This paper is the second of a series.

Wu, Wei [Department of Physics and Astronomy and Department of Chemistry, State University of New York at Stony Brook, Stony Brook, New York 11794 (United States); Wang, Jin, E-mail: jin.wang.1@stonybrook.edu [Department of Physics and Astronomy and Department of Chemistry, State University of New York at Stony Brook, Stony Brook, New York 11794 (United States); State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, 130022 Changchun, China and College of Physics, Jilin University, 130021 Changchun (China)

2014-09-14T23:59:59.000Z

153

Method and apparatus for energy efficient self-aeration in chemical, biochemical, and wastewater treatment processes  

DOE Patents [OSTI]

The present invention is a pulse spilling self-aerator (PSSA) that has the potential to greatly lower the installation, operation, and maintenance cost associated with aerating and mixing aqueous solutions. Currently, large quantities of low-pressure air are required in aeration systems to support many biochemical production processes and wastewater treatment plants. Oxygen is traditionally supplied and mixed by a compressor or blower and a mechanical agitator. These systems have high-energy requirements and high installation and maintenance costs. The PSSA provides a mixing and aeration capability that can increase operational efficiency and reduce overall cost.

Gao, Johnway [Richland, WA; Skeen, Rodney S [Pendleton, OR

2002-05-28T23:59:59.000Z

154

Accelerated maximum likelihood parameter estimation for stochastic biochemical systems  

E-Print Network [OSTI]

as: Daigle et al. : Accelerated maximum likelihood parame-Gillespie DT: Approximate accelerated stochastic simulationARTICLE Open Access Accelerated maximum likelihood parameter

Daigle, Bernie J; Roh, Min K; Petzold, Linda R; Niemi, Jarad

2012-01-01T23:59:59.000Z

155

Energy extremals and Nonlinear Stability in a Variational theory of Barotropic Fluid - Rotating Sphere System  

E-Print Network [OSTI]

A new variational principle - extremizing the fixed frame kinetic energy under constant relative enstrophy - for a coupled barotropic flow - rotating solid sphere system is introduced with the following consequences. In particular, angular momentum is transfered between the fluid and the solid sphere through a modelled torque mechanism. The fluid's angular momentum is therefore not fixed but only bounded by the relative enstrophy, as is required of any model that supports super-rotation. The main results are: At any rate of spin $\\Omega $ and relative enstrophy, the unique global energy maximizer for fixed relative enstrophy corresponds to solid-body super-rotation; the counter-rotating solid-body flow state is a constrained energy minimum provided the relative enstrophy is small enough, otherwise, it is a saddle point. For all energy below a threshold value which depends on the relative enstrophy and solid spin $\\Omega $, the constrained energy extremals consist of only minimizers and saddles in the form of counter-rotating states$.$ Only when the energy exceeds this threshold value can pro-rotating states arise as global maximizers. Unlike the standard barotropic vorticity model which conserves angular momentum of the fluid, the counter-rotating state is rigorously shown to be nonlinearly stable only when it is a local constrained minima. The global constrained maximizer corresponding to super-rotation is always nonlinearly stable.

Chjan C. Lim

2006-02-22T23:59:59.000Z

156

DENSE MULTIPHASE FLOW SIMULATION: CONTINUUM MODEL FOR POLY-DISPERSED SYSTEMS USING KINETIC THEORY  

SciTech Connect (OSTI)

The overall objective of the project was to verify the applicability of the FCMOM approach to the kinetic equations describing the particle flow dynamics. For monodispersed systems the fundamental equation governing the particle flow dynamics is the Boltzmann equation. During the project, the FCMOM was successfully applied to several homogeneous and in-homogeneous problems in different flow regimes, demonstrating that the FCMOM has the potential to be used to solve efficiently the Boltzmann equation. However, some relevant issues still need to be resolved, i.e. the homogeneous cooling problem (inelastic particles cases) and the transition between different regimes. In this report, the results obtained in homogeneous conditions are discussed first. Then a discussion of the validation results for in-homogeneous conditions is provided. And finally, a discussion will be provided about the transition between different regimes. Alongside the work on development of FCMOM approach studies were undertaken in order to provide insights into anisotropy or particles kinetics in riser hydrodynamics. This report includes results of studies of multiphase flow with unequal granular temperatures and analysis of momentum re-distribution in risers due to particle-particle and fluid-particle interactions. The study of multiphase flow with unequal granular temperatures entailed both simulation and experimental studies of two particles sizes in a riser and, a brief discussion of what was accomplished will be provided. And finally, a discussion of the analysis done on momentum re-distribution of gas-particles flow in risers will be provided. In particular a discussion of the remaining work needed in order to improve accuracy and predictability of riser hydrodynamics based on two-fluid models and how they can be used to model segregation in risers.

Moses Bogere

2011-08-31T23:59:59.000Z

157

Introduction to spherical field theory  

E-Print Network [OSTI]

Spherical field theory is a new non-perturbative method for studying quantum field theories. It uses the spherical partial wave expansion to reduce a general d-dimensional Euclidean field theory into a set of coupled one-dimensional systems. The coupled one-dimensional systems are then converted to partial differential equations and solved numerically. We demonstrate the methods of spherical field theory by analyzing Euclidean phi^4 theory in two dimensions.

Dean Lee

1998-11-12T23:59:59.000Z

158

A Density Functional Theory Study of the Mechanism of Free Radical Generation in the System Vanadate/PCA/H2O2  

E-Print Network [OSTI]

with H2O2 releases HOO· free radicals and generates V(IV) species, which are capable of generating HOA Density Functional Theory Study of the Mechanism of Free Radical Generation in the System for HOO· generation. It is also found that species containing two pca ligands and an H2O2 molecule do

Bell, Alexis T.

159

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Brief History of Foam 2004 ­ Bud and foam 2009 ­ No advantage for gas #12;Disposal: Science and Theory What is foam? · What is fire fighting system. #12;Disposal: Science and Theory Foam Composition · Foam can include ­ Mixture of surfactants

Benson, Eric R.

160

Intrinsic Solar System decoupling of a scalar-tensor theory with a universal coupling between the scalar field and the matter Lagrangian  

E-Print Network [OSTI]

In this communication, we present a class of Brans-Dicke-like theories with a universal coupling between the scalar field and the matter Lagrangian. We show this class of theories naturally exhibits a decoupling mechanism between the scalar field and matter. As a consequence, this coupling leads to almost the same phenomenology as general relativity in the Solar System: the trajectories of massive bodies and the light propagation differ from general relativity only at the second post-Newtonian order. Deviations from general relativity are beyond present detection capabilities. However, this class of theories predicts a deviation of the gravitational redshift at a level detectable by the future ACES and STE/QUEST missions.

Olivier Minazzoli; Aurélien Hees

2013-08-13T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


161

Advanced biochemical processes for geothermal brines FY 1998 annual operating plan  

SciTech Connect (OSTI)

As part of the overall Geothermal Energy Research which is aimed at the development of economical geothermal resources production systems, the aim of the Advanced Biochemical Processes for Geothermal Brines (ABPGB) effort is the development of economic and environmentally acceptable methods for disposal of geothermal wastes and conversion of by-products to useful forms. Methods are being developed for dissolution, separation and immobilization of geothermal wastes suitable for disposal, usable in inert construction materials, suitable for reinjection into the reservoir formation, or used for recovery of valuable metals.

NONE

1997-10-01T23:59:59.000Z

162

Oilseeds for Biofuels and Biochemicals in Texas BIOENERGY PROGRAM  

E-Print Network [OSTI]

Oilseeds for Biofuels and Biochemicals in Texas BIOENERGY PROGRAM Description feedstocks (primarily soybean) with food and feed markets. The price of October 2009 Chicago soybean oil to be competitive in the domestic market. U.S. biodiesel manfacturers are closing, consolidating, or suspending

163

IEEE TRANSACTIONS ON MICROWAVE THEORY AND TECHNIQUES, VOL. 57, NO. 5, MAY 2009 1303 A Chipless RFID Sensor System for  

E-Print Network [OSTI]

in the realization of battery-free RFID sensor tags such as tags with energy harvesting power source (eIEEE TRANSACTIONS ON MICROWAVE THEORY AND TECHNIQUES, VOL. 57, NO. 5, MAY 2009 1303 A Chipless RFID

Phoha, Vir V.

164

Characterization and application of vortex flow adsorption for simplification of biochemical product downstream processing  

E-Print Network [OSTI]

One strategy to reduce costs in manufacturing a biochemical product is simplification of downstream processing. Biochemical product recovery often starts from fermentation broth or cell culture. In conventional downstream ...

Ma, Junfen, 1972-

2003-01-01T23:59:59.000Z

165

National Bioenergy Center Biochemical Platform Integration Project: Quarterly Update #26, January - March 2010  

SciTech Connect (OSTI)

January-March, 2010 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter. Issue topics: understanding and improving sugar measurements in biomass hydrolysates; expansion of the NREL/DOE Biochemical Pilot Plant.

Schell, D.

2010-04-01T23:59:59.000Z

166

National Bioenergy Center Biochemical Platform Integration Project: Quarterly Update #13, October-December 2006  

SciTech Connect (OSTI)

Volume 13 of a quarterly newsletter that describes the activities of the National Bioenergy Center's Biochemical Processing Integration Task.

Schell, D. J.

2007-01-01T23:59:59.000Z

167

National Bioenergy Center Biochemical Platform Process Integration Project: Quarterly Update #18, January-March 2008  

SciTech Connect (OSTI)

January-March, 2008 edition of the quarterly update for the National Bioenergy Center's Biochemical Platform Integration Project.

Schell, D.

2008-04-01T23:59:59.000Z

168

National Bioenergy Center Biochemical Platform Integration Project: Quarterly Update #21, October - December 2008  

SciTech Connect (OSTI)

October to December, 2008 edition of the National Bioenergy Center?s Biochemical Platform Integration Project quarterly newsletter.

Schell, D.

2009-01-01T23:59:59.000Z

169

A numerical theory of lattice gas and lattice Boltzmann methods in the computation of solutions to nonlinear advective-diffusive systems  

SciTech Connect (OSTI)

A numerical theory for the massively parallel lattice gas and lattice Boltzmann methods for computing solutions to nonlinear advective-diffusive systems is introduced. The convergence theory is based on consistency and stability arguments that are supported by the discrete Chapman-Enskog expansion (for consistency) and conditions of monotonicity (in establishing stability). The theory is applied to four lattice methods: Two of the methods are for some two-dimensional nonlinear diffusion equations. One of the methods is for the one-dimensional lattice method for the one-dimensional viscous Burgers equation. And one of the methods is for a two-dimensional nonlinear advection-diffusion equation. Convergence is formally proven in the L{sub 1}-norm for the first three methods, revealing that they are second-order, conservative, conditionally monotone finite difference methods. Computational results which support the theory for lattice methods are presented. In addition, a domain decomposition strategy using mesh refinement techniques is presented for lattice gas and lattice Boltzmann methods. The strategy allows concentration of computational resources on regions of high activity. Computational evidence is reported for the strategy applied to the lattice gas method for the one-dimensional viscous Burgers equation. 72 refs., 19 figs., 28 tabs.

Elton, A.B.H.

1990-09-24T23:59:59.000Z

170

Wild Quiver Gauge Theories  

E-Print Network [OSTI]

We study N=2 supersymmetric SU(2) gauge theories coupled to non-Lagrangian superconformal field theories induced by compactifying the six dimensional A_1 (2,0) theory on Riemann surfaces with irregular punctures. These are naturally associated to Hitchin systems with wild ramification whose spectral curves provide the relevant Seiberg-Witten geometries. We propose that the prepotential of these gauge theories on the Omega-background can be obtained from the corresponding irregular conformal blocks on the Riemann surfaces via a generalization of the coherent state construction to the case of higher order singularities.

Giulio Bonelli; Kazunobu Maruyoshi; Alessandro Tanzini

2011-12-15T23:59:59.000Z

171

Closed-form solutions and free energy of hard-spin mean-field theory of a fully frustrated system  

SciTech Connect (OSTI)

Closed-form solutions of the hard-spin mean-field theory equations for the antiferromagnetic Ising model on a triangular lattice, with or without an external field [ital H], are obtained, showing the lack of order for [ital H]=0 and very good agreement with Monte Carlo data for the onset of order for nonzero [ital H]. A free energy calculation is developed, within the context of hard-spin mean-field theory, distinguishing between metastable solutions and true thermodynamic equilibrium.

Kabakcioglu, A.; Nihat Berker, A.; Cemal Yalabik, M. (Department of Physics, Bilkent University, Bilkent, Ankara 06533 (Turkey) Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139 (United States))

1994-04-01T23:59:59.000Z

172

Maxwell's demon in biochemical signal transduction with feedback loop  

E-Print Network [OSTI]

Signal transduction in living cells is vital to maintain life itself, where information transfer in noisy environment plays a significant role. In a rather different context, thermodynamics of information processing by "Maxwell's demon" has been developed recently, leading to a unified theory of thermodynamics and information. Here we combine these two streams of researches, and show that the second law of thermodynamics with informational reveals the fundamental limit of the robustness of signal transduction against environmental fluctuations. Especially, we found that the degree of robustness is quantitatively characterized by an informational quantity called transfer entropy. Our information-thermodynamic approach is applicable to biological communication inside cells, where there is not any explicit channel coding in contrast to the case of artificial communication. Our result would open up a novel biophysical approach to understand information processing in living systems on the basis of the fundamental information-thermodynamic link.

Sosuke Ito; Takahiro Sagawa

2014-11-13T23:59:59.000Z

173

Excitation energies with linear response density matrix functional theory along the dissociation coordinate of an electron-pair bond in N-electron systems  

SciTech Connect (OSTI)

Time dependent density matrix functional theory in its adiabatic linear response formulation delivers exact excitation energies ?{sub ?} and oscillator strengths f{sub ?} for two-electron systems if extended to the so-called phase including natural orbital (PINO) theory. The Löwdin-Shull expression for the energy of two-electron systems in terms of the natural orbitals and their phases affords in this case an exact phase-including natural orbital functional (PILS), which is non-primitive (contains other than just J and K integrals). In this paper, the extension of the PILS functional to N-electron systems is investigated. With the example of an elementary primitive NO functional (BBC1) it is shown that current density matrix functional theory ground state functionals, which were designed to produce decent approximations to the total energy, fail to deliver a qualitatively correct structure of the (inverse) response function, due to essential deficiencies in the reconstruction of the two-body reduced density matrix (2RDM). We now deduce essential features of an N-electron functional from a wavefunction Ansatz: The extension of the two-electron Löwdin-Shull wavefunction to the N-electron case informs about the phase information. In this paper, applications of this extended Löwdin-Shull (ELS) functional are considered for the simplest case, ELS(1): one (dissociating) two-electron bond in the field of occupied (including core) orbitals. ELS(1) produces high quality ?{sub ?}(R) curves along the bond dissociation coordinate R for the molecules LiH, Li{sub 2}, and BH with the two outer valence electrons correlated. All of these results indicate that response properties are much more sensitive to deficiencies in the reconstruction of the 2RDM than the ground state energy, since derivatives of the functional with respect to both the NOs and the occupation numbers need to be accurate.

Meer, R. van; Gritsenko, O. V. [Faculty of Exact Sciences, Theoretical Chemistry, VU University, Amsterdam (Netherlands) [Faculty of Exact Sciences, Theoretical Chemistry, VU University, Amsterdam (Netherlands); WCU Program, Dep. of Chemistry, Pohang Univ. of Science and Techn., Pohang (Korea, Republic of); Baerends, E. J. [Faculty of Exact Sciences, Theoretical Chemistry, VU University, Amsterdam (Netherlands) [Faculty of Exact Sciences, Theoretical Chemistry, VU University, Amsterdam (Netherlands); WCU Program, Dep. of Chemistry, Pohang Univ. of Science and Techn., Pohang (Korea, Republic of); Department of Chemistry, Faculty of Science, King Abdulaziz University, Jeddah 21589 (Saudi Arabia)

2014-01-14T23:59:59.000Z

174

Bridging over p-wave pi-production and weak processes in few-nucleon systems with chiral perturbation theory  

E-Print Network [OSTI]

I study an aspect of chiral perturbation theory (\\chi PT) which enables one to ``bridge'' different reactions. That is, an operator fixed in one of the reactions can then be used to predict the other. For this purpose, I calculate the partial wave amplitude for the p-wave pion production (pp\\to pn\\pi^+) using the pion production operator from the lowest and the next nonvanishing orders. The operator includes a contact operator whose coupling has been fixed using a matrix element of a low-energy weak process (pp\\to de^+\

Satoshi X. Nakamura

2008-05-13T23:59:59.000Z

175

Biochemical Production of Ethanol from Corn Stover: 2007 State of Technology Model  

SciTech Connect (OSTI)

An update to the FY 2005 assessment of the state of technical research progress toward biochemical process goals. This assessment contains research results from 2006 and 2007.

Aden, A.

2008-05-01T23:59:59.000Z

176

Biochemical Production of Ethanol from Corn Stover: 2008 State of Technology Model  

SciTech Connect (OSTI)

An update to the FY 2007 assessment of the state of technical research progress toward biochemical process goals, quantified in terms of Minimum Ethanol Selling Price.

Humbird, D.; Aden, A.

2009-08-01T23:59:59.000Z

177

E-Print Network 3.0 - attenuate biochemical indices Sample Search...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Vanderbilt University Collection: Biology and Medicine 45 Influences of biomass heat and biochemical energy storages on the land surface fluxes and radiative temperature...

178

E-Print Network 3.0 - anhydrase ix biochemical Sample Search...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

ix biochemical Page: << < 1 2 3 4 5 > >> 1 Prokaryotic carbonic anhydrases Kerry S. Smith *, James G. Ferry Summary: Prokaryotic carbonic anhydrases Kerry S. Smith *, James G....

179

E-Print Network 3.0 - analytical chemistry biochemical Sample...  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Powered by Explorit Topic List Advanced Search Sample search results for: analytical chemistry biochemical Page: << < 1 2 3 4 5 > >> 1 UNIVERSITY OF CENTRAL FLORIDA Undergraduate...

180

Transition dynamics between the multiple steady states in natural ventilation systems : from theories to applications in optimal controls  

E-Print Network [OSTI]

In this study, we investigated the multiple steady state behavior, an important observation in numerical and experimental studies in natural ventilation systems. The-oretical models are developed and their applications in ...

Yuan, Jinchao

2007-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


181

Theory and experiments on the effects of perturbations on nonlinear chemical systems: Generation of multiple attractors and efficiency  

SciTech Connect (OSTI)

Periodic perturbations are applied to the input fluxes of reactants in a system which exhibits autonomous oscillations, the combustion of acetaldehyde (ACH) and oxygen, and a system which exhibits damped oscillations, the combustion of methane and oxygen. The ACH system is studied by experiments and numerical analysis and the methane system is studied by numerical analysis. The periodic perturbations are in the form of a two-term Fourier series. Such perturbations may generate multiple attractors, which are either periodic or chaotic. We discuss two types of bistable responses: a new phase bistability, in which a subharmonic frequency is added to a sinusoidal perturbation at different phases relative to the periodic response; and jump phenomena, in which the resonant frequency of a nonlinear oscillator depends on the amplitude of the periodic perturbation. Both the ACH and the methane systems confirm the phase bistability. The additional complex behavior of bistability due to jump phenomena is seen only in calculations in the methane system. In both types of bistability a hysteresis loop is formed as we vary the form of the periodic perturbation. In the methane system, we find period doubling to chaos occuring on one branch of the hysteresis loop while the other branch remains periodic. The methane system has been studied in the context of the efficiency of power production. We calculate the efficiency corresponding to each bistable attractor and find one branch of each pair to be the more efficient mode of operation. In the case of the coexisting periodic and chaotic attractors the chaotic attractor is the more efficient mode of operation.

Hjelmfelt, A.; Harding, R.H.; Tsujimoto, K.K.; Ross, J. (Department of Chemistry, Stanford University, Stanford, California 94305 (US))

1990-03-15T23:59:59.000Z

182

IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS-I: FUNDAMENTAL THEORY AND APPLICATIONS VOL. 39, NO. 9, SEPTEMBER 1992762 torics, Lecture Notes in Mathematics, 406, New York, pp. 247-261,  

E-Print Network [OSTI]

Abstruct-When a generator of a heavily loaded electric power system reaches a reactive power limit, the system can become immediately unstable and a dynamic voltage collapse leading to blackout may follow. We theory of saddle node and transcritical bifurcations. Load power margin calculations can be mis- leading

Dobson, Ian

183

A detailed and unified treatment of spin-orbit systems using tools distilled from the theory of bundles  

E-Print Network [OSTI]

We return to our study \\cite{BEH} of invariant spin fields and spin tunes for polarized beams in storage rings but in contrast to the continuous-time treatment in \\cite{BEH}, we now employ a discrete-time formalism, beginning with the $\\rm{Poincar\\acute{e}}$ maps of the continuous time formalism. We then substantially extend our toolset and generalize the notions of invariant spin field and invariant frame field. We revisit some old theorems and prove several theorems believed to be new. In particular we study two transformation rules, one of them known and the other new, where the former turns out to be an $SO(3)$-gauge transformation rule. We then apply the theory to the dynamics of spin-$1/2$ and spin-$1$ particle bunches and their density matrix functions, describing semiclassically the particle-spin content of bunches. Our approach thus unifies the spin-vector dynamics from the T-BMT equation with the spin-tensor dynamics and other dynamics. This unifying aspect of our approach relates the examples elega...

Heinemann, Klaus; Ellison, James A; Vogt, Mathias

2015-01-01T23:59:59.000Z

184

Energy Engineering & Systems Analysis Success Stories  

E-Print Network [OSTI]

Energy Engineering & Systems Analysis Success Stories For further information, contact: Seth Snyder greenhouse gas emissions, and lower energy costs," said biochemical engineer Seth Snyder. Resin Wafer for Excellence in Technology Transfer for this separations technology. A team led by Argonne biochemical engineer

Kemner, Ken

185

Synthesis of controllers for non-minimum phase and unstable systems using non-sequential MIMO quantitative feedback theory  

E-Print Network [OSTI]

such systems pose serious difficulties in controller synthesis for performance and stability. In spite of the added degrees of freedom the MIMO case also poses difficulties as has been shown in the stabilization of the X-29 aircraft. When using the MIMO QFT...

Lan, Chenyang

2005-08-29T23:59:59.000Z

186

Spatial Querying of Imaging Mass Spectrometry Data for the Biochemical Characterization of Anatomical Regions in Tissue  

E-Print Network [OSTI]

Spatial Querying of Imaging Mass Spectrometry Data for the Biochemical Characterization tissue section. In this paper we develop methods that enable spatial querying of MSI data. The objective that adds spatial information to mass spectral biochemical analysis. It delivers insight into the spatial

187

Optimal adaptive control of (bio)chemical reactors: past, present and future  

E-Print Network [OSTI]

Optimal adaptive control of (bio)chemical reactors: past, present and future Ilse Y. Smets Abstract In this paper an overview of optimal adaptive control of (bio)chemical reactors is presented. Following the paradigm of the Minimum Principle of Pontryagin the derivation of optimal control sequences

Bastin, Georges

188

A Universal Hamilton-Jacobi Theory  

E-Print Network [OSTI]

In this paper we develop a Hamilton-Jacobi theory in the setting of almost Poisson manifolds. The theory extends the classical Hamilton-Jacobi theory and can be also applied to very general situations including nonholonomic mechanical systems and time dependent systems with external forces.

Manuel de León; David Martín de Diego; Miguel Vaquero

2012-09-24T23:59:59.000Z

189

Comparative study of 2-group P1 and diffusion theories for the calculation of the neutron noise in 1D 2-region systems  

E-Print Network [OSTI]

Comparative study of 2-group P1 and diffusion theories for the calculation of the neutron noise of the neutron flux around its mean value, is calculated in 2-group P1 and diffusion theories for a 2-region slab reactor using Green's function technique. The applicability of diffusion theory for different types

Demazière, Christophe

190

Application of Biochemical and Physiological Indicators for Assessing Recovery of Fish Populations in a Disturbed Stream  

SciTech Connect (OSTI)

Recovery dynamics in a previously disturbed streamwere investigated to determine the influence of a series of remedial actions on stream recovery and to evaluate the potential application of bioindicators as an environmental management tool. A suite of bioindicators, representing five different functional response groups, were measured annually for a sentinel fish species over a 15 year period during which a variety of remedial and pollution abatement actions were implemented. Trends in biochemical, physiological, condition, growth, bioenergetic, and nutritional responses demonstrated that the health status of a sentinel fish species in the disturbed stream approached that of fish in the reference stream by the end of the study. Two major remedial actions, dechlorination and water flow management, had large effects on stream recovery resulting in an improvement in the bioenergetic, disease, nutritional, and organ condition status of the sentinel fish species. A subset of bioindicators responded rather dramatically to temporal trends affecting all sites, but some indicators showed little response to disturbance or to restoration activities. In assessing recovery of aquatic systems, application of appropriate integrative structural indices along with a variety of sensitive functional bioindicators should be used to understand the mechanistic basis of stress and recovery and to reduce the risk of false positives. Understanding the mechanistic processes involved between stressors, stress responses of biota, and the recovery dynamics of aquatic systems reduces the uncertainty involved in environmental management and regulatory decisions resulting in an increased ability to predict the consequences of restoration and remedial actions for aquatic systems.

Adams, Marshall [ORNL; Ham, Kenneth [ORNL

2011-01-01T23:59:59.000Z

191

Application of Biochemical and Physiological Indicators for Assessing Recovery of Fish Populations in a Disturbed Stream  

SciTech Connect (OSTI)

Recovery dynamics in a previously disturbed streamwere investigated to determine the influence of a series of remedial actions on stream recovery and to evaluate the potential application of bioindicators as an environmental management tool. A suite of bioindicators, representing five different functional response groups, were measured annually for a sentinel fish species over a 15 year period during which a variety of remedial and pollution abatement actions were implemented. Trends in biochemical, physiological, condition, growth, bioenergetic, and nutritional responses demonstrated that the health status of a sentinel fish species in the disturbed stream approached that of fish in the reference stream by the end of the study. Two major remedial actions, dechlorination and water flow management, had large effects on stream recovery resulting in an improvement in the bioenergetic, disease, nutritional, and organ condition status of the sentinel fish species. A subset of bioindicators responded rather dramatically to temporal trends affecting all sites, but some indicators showed little response to disturbance or to restoration activities. In assessing recovery of aquatic systems, application of appropriate integrative structural indices along with a variety of sensitive functional bioindicators should be used to understand the mechanistic basis of stress and recovery and to reduce the risk of false positives. Understanding the mechanistic processes involved between stressors, stress responses of biota, and the recovery dynamics of aquatic systems reduces the uncertainty involved in environmental management and regulatory decisions resulting in an increased ability to predict the consequences of restoration and remedial actions for aquatic systems.

Adams, S. M.; Ham, Kenneth D.

2011-06-01T23:59:59.000Z

192

Impacts of Optimized Cold & Hot Deck Reset Schedules on Dual Duct VAV Systems - Theory and Model Simulation  

E-Print Network [OSTI]

, is the fan power consumption, cfm is the air flow rate, and cfr&, is the designed air flow rate. In the base cases, the cold deck temperature is 55°F regardless of the ambient temperature. The hot deck temperature varies from 1 10°F to 75°F when... the ambient temperature increases from 40°F to 75OF. When the ambient temperature is lower than 40°F, the hot deck temperature remains at 1 10°F. Figure 5: Cold and Hot Deck Temperature Versus the Ambient Temperature for Base Case or Normal VAV System...

Liu, M.; Claridge, D. E.

1998-01-01T23:59:59.000Z

193

Modeling the Physical and Biochemical Influence of Ocean Thermal Energy Conversion Plant Discharges into their Adjacent Waters  

Broader source: Energy.gov [DOE]

Modeling the Physical and Biochemical Influence of Ocean Thermal Energy Conversion Plant Discharges into their Adjacent Waters

194

THE EVOLUTION OF CIRCUMPLANETARY DISKS AROUND PLANETS IN WIDE ORBITS: IMPLICATIONS FOR FORMATION THEORY, OBSERVATIONS, AND MOON SYSTEMS  

SciTech Connect (OSTI)

Using radiation hydrodynamics simulations, we explore the evolution of circumplanetary disks around wide-orbit proto-gas giants. At large distances from the star ({approx}100 AU), gravitational instability followed by disk fragmentation can form low-mass substellar companions (massive gas giants and/or brown dwarfs) that are likely to host large disks. We examine the initial evolution of these subdisks and their role in regulating the growth of their substellar companions, as well as explore consequences of their interactions with circumstellar material. We find that subdisks that form in the context of GIs evolve quickly from a very massive state. Long-term accretion rates from the subdisk onto the proto-gas giant reach {approx}0.3 Jupiter masses kyr{sup -1}. We also find consistency with previous simulations, demonstrating that subdisks are truncated at {approx}1/3 of the companion's Hill radius and are thick, with (h/r) of {approx}> 0.2. The thickness of subdisks draws to question the use of thin-disk approximations for understanding the behavior of subdisks, and the morphology of subdisks has implications for the formation and extent of satellite systems. These subdisks create heating events in otherwise cold regions of the circumstellar disk and serve as planet formation beacons that can be detected by instruments such as ALMA.

Shabram, Megan; Boley, Aaron C. [Department of Astronomy, University of Florida, 211 Bryant Space Center, Gainesville, FL 32611 (United States)] [Department of Astronomy, University of Florida, 211 Bryant Space Center, Gainesville, FL 32611 (United States)

2013-04-10T23:59:59.000Z

195

Induced biochemical interactions in immature and biodegraded heavy crude oils  

SciTech Connect (OSTI)

Studies in which selective chemical markers have been used to explore the mechanisms by which biocatalysts interact with heavy crude oils have shown that the biochemical reactions follow distinct trends. The term biocatalyst refers to a group of extremophilic microorganisms which, under the experimental conditions used, interact with heavy crude oils to (1) cause a redistribution of hydrocarbons, (2) cause chemical changes in oil fractions containing sulfur compounds and lower the sulfur content, (3) decrease organic nitrogen content, and (4) decrease the concentration of trace metals. Current data indicate that the overall effect is due to simultaneous reactions yielding products with relatively higher concentration of saturates and lower concentrations of aromatics and resins. The compositional changes depend on the microbial species and the chemistry of the crudes. Economic analysis of a potential technology based on the available data indicate that such a technology, used in a pre-refinery mode, may be cost efficient and promising. In the present paper, the background of oil biocatalysis and some recent results will be discussed.

Premuzic, E.T.; Lin, M.S.; Bohenek, M.; Joshi-Tope, G.; Shelenkova, L.; Zhou, W.M.

1998-11-01T23:59:59.000Z

196

INDUCED BIOCHEMICAL INTERACTIONS IN IMMATURE AND BIODEGRADED HEAVY CRUDE OILS  

SciTech Connect (OSTI)

Studies in which selective chemical markers have been used to explore the mechanisms by which biocatalysts interact with heavy crude oils have shown that the biochemical reactions follow distinct trends. The term biocatalyst refers to a group of extremophilic microorganisms which, under the experimental conditions used, interact with heavy crude oils to (1) cause a redistribution of hydrocarbons, (2) cause chemical changes in oil fractions containing sulfur compounds and lower the sulfur content, (3) decrease organic nitrogen content, and (4) decrease the concentration of trace metals. Current data indicate that the overall effect is due to simultaneous reactions yielding products with relatively higher concentration of saturates and lower concentrations of aromatics and resins. The compositional changes depend on the microbial species and the chemistry of the crudes. Economic analysis of a potential technology based on the available data indicate that such a technology, used in a pre-refinery mode, may be cost efficient and promising. In the present paper, the background of oil biocatalysis and some recent results will be discussed.

PREMUZIC,E.T.; LIN,M.S.; BOHENEK,M.; JOSHI-TOPE,G.; SHELENKOVA,L.; ZHOU,W.M.

1998-10-27T23:59:59.000Z

197

Advanced biochemical processes for geothermal brines: Current developments  

SciTech Connect (OSTI)

A research program at Brookhaven National Laboratory (BNL) which deals with the development and application of processes for the treatment of geothermal brines and sludges has led to the identification and design of cost-efficient and environmentally friendly treatment methodology. Initially the primary goal of the processing was to convert geothermal wastes into disposable materials whose chemical composition would satisfy environmental regulations. An expansion of the r and D effort identified a combination of biochemical and chemical processes which became the basis for the development of a technology for the treatment of geothermal brines and sludges. The new technology satisfies environmental regulatory requirements and concurrently converts the geothermal brines and sludges into commercially promising products. Because the chemical composition of geothermal wastes depends on the type of the resource, the emerging technology has to be flexible so that it can be readily modified to suit the needs of a particular type of resource. Recent conceptional designs for the processing of hypersaline and low salinity brines and sludges will be discussed.

Premuzic, E.T.; Lin, M.S.; Bohenek, M. [Brookhaven National Lab., Upton, NY (United States). Energy Science and Technology Div.; Bajsarowicz, V. [CET Environmental Services, Inc., Richmond, CA (United States); McCloud, M. [C.E. Holt/California Energy, Pasadena, CA (United States)

1997-07-07T23:59:59.000Z

198

National Bioenergy Center, Biochemical Platform Integration Project: Quarterly Update, Winter 2011-2012 (Newsletter)  

SciTech Connect (OSTI)

Winter 2011-2012 issue of the National Bioenergy Center Biochemical Platform Integration Project quarterly update. Issue topics: 34th Symposium on Biotechnology for Fuels and Chemicals; feasibility of NIR spectroscopy-based rapid feedstock reactive screening; demonstrating integrated pilot-scale biomass conversion. The Biochemical Process Integration Task focuses on integrating the processing steps in enzyme-based lignocellulose conversion technology. This project supports the U.S. Department of Energy's efforts to foster development, demonstration, and deployment of 'biochemical platform' biorefineries that economically produce ethanol or other fuels, as well as commodity sugars and a variety of other chemical products, from renewable lignocellulosic biomass.

Not Available

2012-04-01T23:59:59.000Z

199

Canonical density matrix perturbation theory  

E-Print Network [OSTI]

Density matrix perturbation theory [Niklasson and Challacombe, Phys. Rev. Lett. 92, 193001 (2004)] is generalized to canonical (NVT) free energy ensembles in tight-binding, Hartree-Fock or Kohn-Sham density functional theory. The canonical density matrix perturbation theory can be used to calculate temperature dependent response properties from the coupled perturbed self-consistent field equations as in density functional perturbation theory. The method is well suited to take advantage of sparse matrix algebra to achieve linear scaling complexity in the computational cost as a function of system size for sufficiently large non-metallic materials and metals at high temperatures.

Niklasson, Anders M N; Rubensson, Emanuel H; Rudberg, Elias

2015-01-01T23:59:59.000Z

200

National Bioenergy Center--Biochemical Platform Integration Project: Quarterly Update, Fall 2010  

SciTech Connect (OSTI)

Fall 2010 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter. Issue topics: rapid analysis models for compositional analysis of intermediate process streams; engineered arabinose-fermenting Zymomonas mobilis strain.

Schell, D.

2010-12-01T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


201

BIOENERGY/BIOFUELS/BIOCHEMICALS Chromatographic determination of 1, 4-b-xylooligosaccharides  

E-Print Network [OSTI]

BIOENERGY/BIOFUELS/BIOCHEMICALS Chromatographic determination of 1, 4-b. Li Á R. Kumar Á C. E. Wyman BioEnergy Science Center, Oak Ridge, TN 37831, USA 123 J Ind Microbiol

California at Riverside, University of

202

Soy Isoflavone Supplementation and Biochemical Recurrence After Curative Treatment for Localized Prostate Cancer  

E-Print Network [OSTI]

Background: Despite an abundance of soy interventions, the effect of soy isoflavones prior to curative treatment for localized prostate cancer on biochemical recurrence has not been evaluated. Objective: To determine if ...

Camey, Sarah

2013-08-31T23:59:59.000Z

203

Exploring the Pinhole: Biochemical and Genetic Studies on the Prototype Pinholin, S21  

E-Print Network [OSTI]

EXPLORING THE PINHOLE: BIOCHEMICAL AND GENETIC STUDIES ON THE PROTOTYPE PINHOLIN, S21 A Dissertation by TING PANG Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements... for the degree of DOCTOR OF PHILOSOPHY May 2010 Major Subject: Biochemistry EXPLORING THE PINHOLE: BIOCHEMICAL AND GENETIC STUDIES ON THE PROTOTYPE PINHOLIN, S21 A Dissertation by TING PANG Submitted to the Office of Graduate...

Pang, Ting

2011-08-08T23:59:59.000Z

204

DENSITY FUNCTIONAL THEORY, THE MODERN TREATMENT OF  

E-Print Network [OSTI]

DENSITY FUNCTIONAL THEORY, THE MODERN TREATMENT OF ELECTRON CORRELATIONS E.K.U. Gross and Stefan The basic idea of density functional theory is to describe a many-electron system exclusively and completely-consistent scheme, known as the Kohn-Sham scheme [2], is the heart of modern density functional theory

Gross, E.K.U.

205

Systems theory of Smad signaling  

E-Print Network [OSTI]

Transforming Growth Factor-beta (TGF-beta) signalling is an important regulator of cellular growth and differentiation. The principal intracellular mediators of TGF-beta signalling are the Smad proteins, which upon TGF-beta stimulation accumulate in the nucleus and regulate transcription of target genes. To investigate the mechanisms of Smad nuclear accumulation, we developed a simple mathematical model of canonical Smad signalling. The model was built using both published data and our experimentally determined cellular Smad concentrations (isoforms 2, 3, and 4). We found in mink lung epithelial cells that Smad2 (8.5-12 x 10^4 molecules/cell) was present in similar amounts to Smad4 (9.3-12 x 10^4 molecules/cell), while both were in excess of Smad3 (1.1-2.0 x 10^4 molecules/cell). Variation of the model parameters and statistical analysis showed that Smad nuclear accumulation is most sensitive to parameters affecting the rates of RSmad phosphorylation and dephosphorylation and Smad complex formation/dissociation in the nucleus. Deleting Smad4 from the model revealed that rate-limiting phospho-R-Smad dephosphorylation could be an important mechanism for Smad nuclear accumulation. Furthermore, we observed that binding factors constitutively localised to the nucleus do not efficiently mediate Smad nuclear accumulation if dephosphorylation is rapid. We therefore conclude that an imbalance in the rates of R-Smad phosphorylation and dephosphorylation is likely an important mechanism of Smad nuclear accumulation during TGF-beta signalling.

D. C. Clarke; M. D. Betterton; X. Liu

2006-03-22T23:59:59.000Z

206

Biochemical and photochemical control of leaf disk expansion  

E-Print Network [OSTI]

) May 1957 -i- ACKNOWLEDGEMENTS The writer wishes to express his sincere appreciation to Professor James L. Liverman who directed this research and obtained grants in aid from the National Science Foundation and U0 S. Atomic Energy Commission... internode growth in pea (7), bean (8,9), oat (10), and barley (11). Theories advanced for this light mediated growth reduction are that red light causes a decreased amount of available auxin (12), an increased IAA oxidase activity (12), or a decreased...

Scott, Ralph A.

1957-01-01T23:59:59.000Z

207

Reachability Analysis of Stochastic Hybrid Systems: A Biodiesel Production System  

E-Print Network [OSTI]

Reachability Analysis of Stochastic Hybrid Systems: A Biodiesel Production System Derek Riley problem because it provides a formal framework to analyze complex systems. Biodiesel production is a realistic biochemical process that can be modeled and analyzed using SHS methods. Analysis of a biodiesel

Koutsoukos, Xenofon D.

208

Role of exchange in density-functional theory for weakly interacting systems: Quantum Monte Carlo analysis of electron density and interaction energy  

E-Print Network [OSTI]

We analyze the density-functional theory (DFT) description of weak interactions by employing diffusion and reptation quantum Monte Carlo (QMC) calculations, for a set of benzene-molecule complexes. While the binding energies ...

Grossman, Jeffrey C.

209

Salinas : theory manual.  

SciTech Connect (OSTI)

Salinas provides a massively parallel implementation of structural dynamics finite element analysis, required for high fidelity, validated models used in modal, vibration, static and shock analysis of structural systems. This manual describes the theory behind many of the constructs in Salinas. For a more detailed description of how to use Salinas, we refer the reader to Salinas, User's Notes. Many of the constructs in Salinas are pulled directly from published material. Where possible, these materials are referenced herein. However, certain functions in Salinas are specific to our implementation. We try to be far more complete in those areas. The theory manual was developed from several sources including general notes, a programmer notes manual, the user's notes and of course the material in the open literature.

Walsh, Timothy Francis; Reese, Garth M.; Bhardwaj, Manoj Kumar

2011-11-01T23:59:59.000Z

210

A proposed gravitodynamic theory  

E-Print Network [OSTI]

This paper proposes a gravitodynamic theory because there are similarities between gravitational theory and electrodynamics. Based on Einstein's principle of equivalence, two coordinate conditions are proposed into the four-dimensional line element and transformations. As a consequence,the equation of motion for gravitational force or inertial force has a form similar to the equation of Lorentz force on a charge in electrodynamics. The inertial forces in auniformly rotating system are calculated, which show that the Coriolis force is produced by a magnetic-type gravitational field. We have also calculated the Sagnac effect due to the rotation. These experimental facts strongly support our proposed coordinate conditions. In addition, the gravitodynamic field equations are briefly discussed. Since only four gravitational potentials (3 + 1 split) enter the metric tensor, the gravitodynamic field equations in ``3+1 split" form would be analogous to Maxwell's equations.

T. Chang

1997-03-18T23:59:59.000Z

211

Eur. J. Biochem. 200,223-236 (1991) 001429569100530Y  

E-Print Network [OSTI]

by the environment of the system; they can act as external regulators by communicating changes in the environment we use the medium of control analysis to re- assess the concept of metabolic regulation, specifically

212

Constrained sensitivity theory  

SciTech Connect (OSTI)

In sensitivity and uncertainty analysis of to-be-built reactors it is customary to use k-reset sensitivity functions - accounting for the combined effects of the change (or uncertainty) in the input data and of the alteration in some design variable applied to maintain criticality. Critical reactors are usually subjected to several constraints, such as power peaking factor and breeding ratio constraints, in addition to the criticality constraint. Perturbation theory formulations which can account, simultaneously, for several constraints both in critical reactors and in source driven systems (such as radiation shields and blankets of fusion devices) are presented. All the sensitivity and uncertainty analyses of source driven systems carried out so far used unconstrained sensitivity functions despite the fact that such systems can be also subjected to a variety of constraints.

Greenspan, E.; Williams, M.L.

1980-01-01T23:59:59.000Z

213

A double exponential model for biochemical oxygen demand Ian G. Mason a,*, Robert I. McLachlan b  

E-Print Network [OSTI]

A double exponential model for biochemical oxygen demand Ian G. Mason a,*, Robert I. McLachlan b , Daniel T. Ge´rard a a Institute of Technology and Engineering, Massey University, Palmerston North, New 2005 Abstract Biochemical oxygen demand (BOD) exertion patterns in anaerobically treated farm dairy

McLachlan, Robert

214

Theory Center | Jefferson Lab  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE:1 First Use of Energy for All Purposes (Fuel and Nonfuel),Feet) Year Jan Feb Mar Apr May Jun Jul(Summary)morphinanInformation Desert Southwest RegionatSearchScheduled System BurstLong TermScience Jefferson Lab Theory

215

Theory of electromagnetic fields  

E-Print Network [OSTI]

We discuss the theory of electromagnetic fields, with an emphasis on aspects relevant to radiofrequency systems in particle accelerators. We begin by reviewing Maxwell's equations and their physical significance. We show that in free space, there are solutions to Maxwell's equations representing the propagation of electromagnetic fields as waves. We introduce electromagnetic potentials, and show how they can be used to simplify the calculation of the fields in the presence of sources. We derive Poynting's theorem, which leads to expressions for the energy density and energy flux in an electromagnetic field. We discuss the properties of electromagnetic waves in cavities, waveguides and transmission lines.

Wolski, Andrzej

2011-01-01T23:59:59.000Z

216

Composite Photon Theory Versus Elementary Photon Theory  

E-Print Network [OSTI]

The purpose of this paper is to show that the composite photon theory measures up well against the Standard Model's elementary photon theory. This is done by comparing the two theories area by area. Although the predictions of quantum electrodynamics are in excellent agreement with experiment (as in the anomalous magnetic moment of the electron), there are some problems, such as the difficulty in describing the electromagnetic field with the four-component vector potential because the photon has only two polarization states. In most areas the two theories give similar results, so it is impossible to rule out the composite photon theory. Pryce's arguments in 1938 against a composite photon theory are shown to be invalid or irrelevant. Recently, it has been realized that in the composite theory the antiphoton does not interact with matter because it is formed of a neutrino and an antineutrino with the wrong helicity. This leads to experimental tests that can determine which theory is correct.

Walton A. Perkins

2015-03-02T23:59:59.000Z

217

Urban organizational systems  

E-Print Network [OSTI]

General systems theory provides a conceptual framework for the integration of knowledge from a wide variety of specialized fields. Systems theory serves to synthesize, reconcile, and integrate knowledge making it possible ...

Morog, Joseph V

1981-01-01T23:59:59.000Z

218

National Bioenergy Center, Biochemical Platform Integration Project: Quarterly Update, Summer 2011 (Newsletter)  

SciTech Connect (OSTI)

Summer 2011 issue of the National Bioenergy Center Biochemical Platform Integration Project quarterly update. Issue topics: evaluating new analytical techniques for measuring soluble sugars in the liquid portion of biomass hydrolysates, and measurement of the fraction of insoluble solids in biomass slurries.

Not Available

2011-09-01T23:59:59.000Z

219

Topographic Variations in Biomechanical and Biochemical Properties in the Ankle Joint: An In Vitro Bovine Study  

E-Print Network [OSTI]

Topographic Variations in Biomechanical and Biochemical Properties in the Ankle Joint: An In Vitro the articulating surfaces of the ankle joint and to evaluate the functional and biological properties of engineered neo- cartilage generated using chondrocytes from different locations in the ankle joint. Methods

Athanasiou, Kyriacos

220

Biochemical characterization of Cdc6/Orc1 binding to the replication origin of the euryarchaeon  

E-Print Network [OSTI]

Biochemical characterization of Cdc6/Orc1 binding to the replication origin of the euryarchaeon (Cdc6)/Origin Replication Complex subunit 1 (Orc1) proteins share sequence homology with eukaryotic DNA under- stand whether Cdc6/Orc1 functions in an eukaryotic or bacterial-like manner, we have

Berger, James M.

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


221

Radial Basis Function Neural Networks in Variable Structure Control of a Class of Biochemical Processes  

E-Print Network [OSTI]

is that the method presented does not require the analytical details describing the plant dynamics available. I conditions and unknown plant dynamics. In this paper, an analytic approach towards the calculation@ieee.org X.Yu@cqu.edu.au Abstract ­ Biochemical processes often display a complicated dynamic behavior

Wilamowski, Bogdan Maciej

222

Eur. J. Biochem. 78, 585-598 (1977) Binding of Modified Adenine Nucleotides  

E-Print Network [OSTI]

Eur. J. Biochem. 78, 585-598 (1977) Binding of Modified Adenine Nucleotides to Isolated Coupling) 1. Fluorescent nucleotides (1,N6-ethenoadenosine diphosphate and triphosphate, EADP and EATP)replace the natural nucleotides rather efficiently (65- 85%) in several chloroplast reactions (ADP inhibition

Govindjee

223

Biochemical Engineering Journal 89 (2014) 2127 Contents lists available at ScienceDirect  

E-Print Network [OSTI]

Direct Biochemical Engineering Journal journal homepage: www.elsevier.com/locate/bej Regular article Tyrosinase: Biofabrication Caffeic acid Chitosan Electrodeposition Redox Tyrosinase a b s t r a c t Physics and chemistry and function. Here, we describe one such biofabrication methodology, the use of tyrosinase to graft phenolics

Raghavan, Srinivasa

224

Changes in the Mechanical and Biochemical Properties of Aortic Tissue due to Cold Storage  

E-Print Network [OSTI]

Changes in the Mechanical and Biochemical Properties of Aortic Tissue due to Cold Storage Ming Background. Temporary cold storage is a common procedure for preserving tissues for a short time be- fore; collagen; mechan- ical properties; arteries; cold storage; soft tissue; mechanical testing; vascular

Zhang, Katherine Yanhang

225

National Bioenergy Center Biochemical Platform Integration Project: Quarterly Update #28, Spring 2011  

SciTech Connect (OSTI)

Spring 2011 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter. Issue topics: 33rd Symposium on Biotechnology for Fuels and Chemicals program sessions and special topic sessions; assessment of waste water treatment needs; and an update on new arabinose-to-ethanol fermenting Zymomonas mobilis strains.

Schell, D. J.

2011-04-01T23:59:59.000Z

226

National Bioenergy Center Biochemical Platform Integration Project: Quarterly Update #27, April - June 2010  

SciTech Connect (OSTI)

April-June, 2010 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter. Issue topics: understanding performance of alternative process configurations for producing ethanol from biomass; investigating Karl Fischer Titration for measuring water content of pretreated biomass slurries.

Schell, D.

2010-07-01T23:59:59.000Z

227

National Bioenergy Center - Biochemical Platform Integration Project: Quarterly Update, Winter 2010  

SciTech Connect (OSTI)

Winter 2011 edition of the National Bioenergy Center's Biochemical Platform Integration Project quarterly newsletter. Issue topics: 33rd Symposium on Biotechnology for Fuels and Chemicals program topic areas; results from reactive membrane extraction of inhibitors from dilute-acid pretreated corn stover; list of 2010 task publications.

Schell, D.

2011-02-01T23:59:59.000Z

228

155:427 CHEMICAL & BIOCHEMICAL ENGINEERING DESIGN AND ECONOMICS I FALL 2014 (3 credits)  

E-Print Network [OSTI]

of the steps involved in the design and economic evaluation of chemical and biochemical processes. We elaborate and economic evaluation of their project forms their major task during the Spring semester design course (155, optimization and economic evaluation: planning, cost estimation, fixed capital investments, working capital

Muzzio, Fernando J.

229

Department of Chemical and Biochemical Engineering Institute for Chemicals and Fuels from Alternative Resources  

E-Print Network [OSTI]

. The successful candidate will be an important member of the Institute for Chemicals and Fuels from AlternativeDepartment of Chemical and Biochemical Engineering Institute for Chemicals and Fuels from Alternative Resources The University of Western Ontario Applications are invited for a junior faculty position

Sinnamon, Gordon J.

230

Final Technical Report Modeling the Physical and Biochemical Influence of Ocean  

E-Print Network [OSTI]

Influence of Ocean Thermal Energy Conversion Plant Discharges into their Adjacent Waters DOE AWARD NO. DE sustainably with acceptably low biological impact. Ocean Thermal Energy Conversion (OTEC) uses large flowsFinal Technical Report Modeling the Physical and Biochemical Influence of Ocean Thermal Energy

231

Volume 6(2): 068-074 (2014) -068 J Microb Biochem Technol  

E-Print Network [OSTI]

are lacking on anaerobic corrosion by acid producing bacteria (APB) that undergo anaerobic fermentation the possibility of very high MIC pitting corrosion rates due to free organic acids (represented by acetic acid of Acid Producing Bacteria Causing Fast Pitting Bioc`orrosion. J Microb Biochem Technol 6: 067-073. doi:10

Gu, Tingyue

2014-01-01T23:59:59.000Z

232

Transgression field theory for interacting topological insulators  

E-Print Network [OSTI]

We consider effective topological field theories of quantum Hall systems and time-reversal invariant topological insulators that are Chern-Simons and BF field theories. The edge states of these systems are related to the gauge invariance of the effective actions. For the edge states at the interface of two topological insulators, transgression field theory is proposed as a gauge invariant effective action. Transgression actions of Chern-Simons theories for (2+1)D and (4+1)D and BF theories for (3+1)D are constructed. By using transgression actions, the edge states are written in terms of the bulk connections of effective Chern-Simons and BF theories.

Aç?k, Özgür

2013-01-01T23:59:59.000Z

233

Dark Matter Theory  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Dark Matter Theory Dark Matter Theory Understanding discoveries at the Energy, Intensity, and Cosmic Frontiers Get Expertise Rajan Gupta (505) 667-7664 Email Bruce Carlsten (505)...

234

Quantum Field Theory & Gravity  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Field Theory & Gravity Quantum Field Theory & Gravity Understanding discoveries at the Energy, Intensity, and Cosmic Frontiers Get Expertise Rajan Gupta (505) 667-7664 Email...

235

Metabolic Futile Cycles and Their Functions: A Systems Analysis of Energy and Control  

E-Print Network [OSTI]

It has long been hypothesized that futile cycles in cellular metabolism are involved in the regulation of biochemical pathways. Following the work of Newsholme and Crabtree, we develop a quantitative theory for this idea based on open-system thermodynamics and metabolic control analysis. It is shown that the {\\it stoichiometric sensitivity} of an intermediary metabolite concentration with respect to changes in steady-state flux is governed by the effective equilibrium constant of the intermediate formation, and the equilibrium can be regulated by a futile cycle. The direction of the shift in the effective equilibrium constant depends on the direction of operation of the futile cycle. High stoichiometric sensitivity corresponds to ultrasensitivity of an intermediate concentration to net flow through a pathway; low stoichiometric sensitivity corresponds to super-robustness of concentration with respect to changes in flux. Both cases potentially play important roles in metabolic regulation. Futile cycles actively shift the effective equilibrium by expending energy; the magnitude of changes in effective equilibria and sensitivities is a function of the amount of energy used by a futile cycle. This proposed mechanism for control by futile cycles works remarkably similarly to kinetic proofreading in biosynthesis. The sensitivity of the system is also intimately related to the rate of concentration fluctuations of intermediate metabolites. The possibly different roles of the two major mechanisms for cellular biochemical regulation, namely reversible chemical modifications via futile cycles and shifting equilibrium by macromolecular binding, are discussed.

Hong Qian; Daniel A. Beard

2006-06-14T23:59:59.000Z

236

Biotechnol. Appl. Biochem. (2005) 42, 119131 (Printed in Great Britain) doi:10.1042/BA20040207 119 Clonal evolution of stem and differentiated cells can be  

E-Print Network [OSTI]

Biotechnol. Appl. Biochem. (2005) 42, 119­131 (Printed in Great Britain) doi:10.1042/BA20040207 119

Zandstra, Peter W.

237

Presented at the International Joint Conference on Information Systems, Fuzzy Theory and Technology Conference, Atlantic City, N.J. March 2, 2000.  

E-Print Network [OSTI]

published regarding the combination of fuzzy logic (FL) and genetic algorithms (GA) (Herrera and Verdegay 1999). Fuzzy logic is a useful tool for modeling complex systems and deriving useful fuzzy relations systems (Chen 1998) or fuzzy control systems (Tang et. al. 1998); our goal is to maximize the similarity

Bridges, Susan M.

238

SMITH THEORY FOR ALGEBRAIC VARIETIES PETER SYMONDS  

E-Print Network [OSTI]

SMITH THEORY FOR ALGEBRAIC VARIETIES PETER SYMONDS Abstract. We show how an approach to Smith varieties. 1. Introduction Peter May described in [8] a version of Smith Theory based on Bredon cohomology of the variety. We show how to generalize this to obtain a complex of projective coefficient systems. Thus Smith

Symonds, Peter

239

Electromagnetic Field Theory  

E-Print Network [OSTI]

Electromagnetic Field Theory BO THID� UPSILON BOOKS #12;#12;ELECTROMAGNETIC FIELD THEORY #12;#12;Electromagnetic Field Theory BO THID� Swedish Institute of Space Physics and Department of Astronomy and Space, Sweden UPSILON BOOKS · COMMUNA AB · UPPSALA · SWEDEN #12;Also available ELECTROMAGNETIC FIELD THEORY

Hart, Gus

240

Center for Information & Systems Engineering  

E-Print Network [OSTI]

imaging, video surveillance, modern energy systems and bioinformatics. With a proven track record of scholarship, funding and industry collaboration, CISE faculty bring vast research experience to addressing, information theory, control theory, queuing theory, simulation, and applied probability and statistics. Master

Goldberg, Bennett

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


241

MBI Biorefinery: Corn to Biomass, Ethanol to Biochemicals and Biomaterials  

SciTech Connect (OSTI)

The project is a continuation of DOE-funded work (FY02 and FY03) that has focused on the development of the ammonia fiber explosion (AFEX) pretreatment technology, fermentation production of succinic acid and new processes and products to enhance dry mill profitability. The primary objective for work beginning in April 2004 and ending in November 2005 is focus on the key issues related to the: (1) design, costing and construction plan for a pilot AFEX pretreatment system, formation of a stakeholder development team to assist in the planning and design of a biorefinery pilot plant, continued evaluation of corn fractionation technologies, corn oil extraction, AFEX treatment of corn fiber/DDGs; (2) development of a process to fractionate AFEX-treated corn fiber and corn stover--cellulose and hemicellulose fractionation and sugar recovery; and (3) development of a scalable batch succinic acid production process at 500 L at or below $.42/lb, a laboratory scale fed-batch process for succinic acid production at or below $.40/lb, a recovery process for succinic acid that reduces the cost of succinic acid by $.02/lb and the development of an acid tolerant succinic acid production strain at lab scale (last objective not to be completed during this project time period).

None

2006-02-17T23:59:59.000Z

242

Condensed Matter Theory Center Tuesday, December 13  

E-Print Network [OSTI]

Condensed Matter Theory Center Seminar Tuesday, December 13 11:00am-12:30pm 2205 Physics Building" Abstract: At sufficiently low temperatures, condensed-matter systems tend to develop order. An notable

Lathrop, Daniel P.

243

Heavy quarks in effective field theories  

E-Print Network [OSTI]

Heavy quark physics serves as a probe to understand QCD, measure standard model parameters, and look for signs of new physics. We study several aspects of heavy quark systems in an effective field theory framework, including ...

Jain, Ambar

2009-01-01T23:59:59.000Z

244

First-principles theory of orbital magnetization  

E-Print Network [OSTI]

Within density-functional theory we compute the orbital magnetization for periodic systems evaluating a recently discovered Berry-phase formula. For the ferromagnetic metals Fe, Co, and Ni we explicitly calculate the ...

Gerstmann, Uwe

245

The AAAI-04 Workshop on Agent Organizations: Theory and Practice. July 25-29, 2004, San Jose, California. An Organizational Model for Designing Adaptive Multiagent Systems  

E-Print Network [OSTI]

, California. An Organizational Model for Designing Adaptive Multiagent Systems Scott A. DeLoach Eric Matson describes how to design adaptive multiagent systems using an organizational model, which defines to provide required information at various levels of efficiency and effectiveness. Introduction The field

Deloach, Scott A.

246

Biochemical changes in the proteins of sorghum grain during moisture reconstitution  

E-Print Network [OSTI]

MICROORGANISM INHABITING SORGHUM GRAIN AFTER RECONSTITUTION Medium Growth Acid Gas MR VP Nitrate Reduction Mannose yes yes no Glucose yes yes no Sucrose yes no no Gal actos e yes yes no Mannitol Starch Maltose yes yes yes no no yes...BIOCHEMICAL CHANGES IN THE PROTEINS OF SORGHUM GRAIN DURING MOISTURE RECONSTITUTION A Thesis by TOBY JACKSON BILLINGS Submitted to the Graduate College of the Texas A&M University in partial fulfillment of the requirement for the degree...

Billings, Toby Jackson

1972-01-01T23:59:59.000Z

247

Chemical residues and biochemical responses in wild and cultured European sea bass (Dicentrarchus labrax L.)  

SciTech Connect (OSTI)

Cultured and wild sea bass (Dicentrarchus labrax) from the Arade Estuary were sampled in summer and winter and the degree of exposure to metals and polycyclic aromatic hydrocarbons (PAHs) assessed, together with some biochemical responses against those and other pollutants. The highest levels of copper (up to 997 {mu}g g{sup -1} dry weight) and cadmium (up to 4.22 {mu}g g{sup -1} dry weight) were detected in the liver and kidney of cultured specimens, whereas the highest exposure to PAHs was observed in wild fish. Significant alterations in some biochemical markers were detected and associated to pollutant exposure. Thus, metallothionein concentrations were higher in the tissues of cultured fish and positively correlated with metal residues. The activity 7-ethoxyresorufin O-deethylase ranged from 28 pmol/min/mg protein in cultured fish to 83 pmol/min/mg protein in wild fish collected near a marina area. Cultured fish and wild fish from the marina area had depressed acetylcholinesterase in muscle tissue and a parasitic infection in the gonads. The obtained results support the usefulness of the combined use of chemical and biochemical markers to assess the impact of anthropogenic pollutants in both wild and cultured fish.

Fernandes, Denise [C.I.M.A., University of Algarve, F.C.M.A., Campus de Gambelas, 8005-139-Faro (Portugal); Department of Environmental Chemistry, IIQAB-CSIC, Jordi Girona 18, 08034-Barcelona (Spain); Porte, Cinta [Department of Environmental Chemistry, IIQAB-CSIC, Jordi Girona 18, 08034-Barcelona (Spain)]. E-mail: cpvqam@cid.csic.es; Bebianno, Maria Joao [C.I.M.A., University of Algarve, F.C.M.A., Campus de Gambelas, 8005-139-Faro (Portugal)

2007-02-15T23:59:59.000Z

248

Constructor Theory of Information  

E-Print Network [OSTI]

We present a theory of information expressed solely in terms of which transformations of physical systems are possible and which are impossible - i.e. in constructor-theoretic terms. Although it includes conjectured laws of physics that are directly about information, independently of the details of particular physical instantiations, it does not regard information as an a priori mathematical or logical concept, but as something whose nature and properties are determined by the laws of physics alone. It does not suffer from the circularity at the foundations of existing information theory (namely that information and distinguishability are each defined in terms of the other). It explains the relationship between classical and quantum information, and reveals the single, constructor-theoretic property underlying the most distinctive phenomena associated with the latter, including the lack of in-principle distinguishability of some states, the impossibility of cloning, the existence of pairs of variables that cannot simultaneously have sharp values, the fact that measurement processes can be both deterministic and unpredictable, the irreducible perturbation caused by measurement, and entanglement (locally inaccessible information).

David Deutsch; Chiara Marletto

2014-07-14T23:59:59.000Z

249

Assessment of Cerebellar and Hippocampal Morphology and Biochemical Parameters in the Compound Heterozygous, Tottering/leaner Mouse  

E-Print Network [OSTI]

and death in cells of the hippocampal dentate gyrus and 3) changes in basic biochemical parameters in granule cells of the cerebellum and hippocampus. This study revealed no volume abnormalities within the hippocampus of the mutant mice, but a decrease...

Murawski, Emily M.

2010-07-14T23:59:59.000Z

250

Electromagnetic Theory 1 /56 Electromagnetic Theory  

E-Print Network [OSTI]

Electromagnetic Theory 1 /56 Electromagnetic Theory Summary: · Maxwell's equations · EM Potentials · Equations of motion of particles in electromagnetic fields · Green's functions · Lienard-Weichert potentials · Spectral distribution of electromagnetic energy from an arbitrarily moving charge #12;Electromagnetic

Bicknell, Geoff

251

Elements of number theory  

E-Print Network [OSTI]

The dissertation argues for the necessity of a morphosemantic theory of number, that is, a theory of number serviceable both to semantics and morphology. The basis for this position, and the empirical core of the dissertation, ...

Harbour, Daniel, 1975-

2003-01-01T23:59:59.000Z

252

Elementary particle theory  

SciTech Connect (OSTI)

The present state of the art in elementary particle theory is reviewed. Topics include quantum electrodynamics, weak interactions, electroweak unification, quantum chromodynamics, and grand unified theories. 113 references. (WHK)

Marciano, W.J.

1984-12-01T23:59:59.000Z

253

Exact relativistic kinetic theory of the full unstable spectrum of an electron-beam-plasma system with Maxwell-Juettner distribution functions  

SciTech Connect (OSTI)

Following a recent Letter by Bret et al. [Phys. Rev. Lett. 100, 205008 (2008)], we present a detailed report of the entire unstable k spectrum of a relativistic collisionless beam-plasma system within a fully kinetic framework. In contrast to a number of previously published studies, our linear analysis makes use of smooth momentum distribution functions of the Maxwell-Juettner form. The three competing classes of instabilities, namely, two-stream, filamentation, and oblique modes, are dealt with in a unified manner, no approximation being made regarding the beam-plasma densities, temperatures, and drift energies. We investigate the hierarchy between the competing modes, paying particular attention to the relatively poorly known quasielectrostatic oblique modes in the regime where they govern the system. The properties of the fastest growing oblique modes are examined in terms of the system parameters and compared to those of the dominant two-stream and filamentation modes.

Bret, A.; Gremillet, L.; Benisti, D. [ETSI Industriales, Universidad de Castilla-La Mancha, 13071 Ciudad Real, Spain and Instituto de Investigaciones Energeticas y Aplicaciones Industriales, Campus Universitario de Ciudad Real, 13071 Ciudad Real (Spain); CEA, DAM, DIF, F-91297 Arpajon (France)

2010-03-15T23:59:59.000Z

254

Game Theory Kenneth Prestwich  

E-Print Network [OSTI]

...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ......... . . . . . . ESS Game theory modeling: Hawks dashed line and Doves solid line. #12;Game Theory Kenneth Prestwich ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ............. ......... . . . . . . ESS Game theory modeling: Hawks dashed line and Doves solid line. #12;c 1999 by Kenneth Prestwich. All are available on-line at: http: science.holycross.edu departments biology kprestwi behavior ESS ESS index frmset

Prestwich, Ken

255

Topological insulators and superconductors from string theory  

SciTech Connect (OSTI)

Topological insulators and superconductors in different spatial dimensions and with different discrete symmetries have been fully classified recently, revealing a periodic structure for the pattern of possible types of topological insulators and superconductors, both in terms of spatial dimensions and in terms of symmetry classes. It was proposed that K theory is behind the periodicity. On the other hand, D-branes, a solitonic object in string theory, are also known to be classified by K theory. In this paper, by inspecting low-energy effective field theories realized by two parallel D-branes, we establish a one-to-one correspondence between the K-theory classification of topological insulators/superconductors and D-brane charges. In addition, the string theory realization of topological insulators and superconductors comes naturally with gauge interactions, and the Wess-Zumino term of the D-branes gives rise to a gauge field theory of topological nature, such as ones with the Chern-Simons term or the {theta} term in various dimensions. This sheds light on topological insulators and superconductors beyond noninteracting systems, and the underlying topological field theory description thereof. In particular, our string theory realization includes the honeycomb lattice Kitaev model in two spatial dimensions, and its higher-dimensional extensions. Increasing the number of D-branes naturally leads to a realization of topological insulators and superconductors in terms of holography (AdS/CFT).

Ryu, Shinsei; Takayanagi, Tadashi [Department of Physics, University of California, Berkeley, California 94720 (United States); Institute for the Physics and Mathematics of the Universe (IPMU), University of Tokyo, Kashiwa, Chiba 277-8582 (Japan)

2010-10-15T23:59:59.000Z

256

Topological Insulators and Superconductors from String Theory  

E-Print Network [OSTI]

Topological insulators and superconductors in different spatial dimensions and with different discrete symmetries have been fully classified recently, revealing a periodic structure for the pattern of possible types of topological insulators and supercondutors, both in terms of spatial dimensions and in terms of symmetry classes. It was proposed that K-theory is behind the periodicity. On the other hand, D-branes, a solitonic object in string theory, are also known to be classified by K-theory. In this paper, by inspecting low-energy effective field theories realized by two parallel D-branes, we establish a one-to-one correspondence between the K-theory classification of topological insulators/superconductors and D-brane charges. In addition, the string theory realization of topological insulators and superconductors comes naturally with gauge interactions, and the Wess-Zumino term of the D-branes gives rise to a gauge field theory of topological nature, such as ones with the Chern-Simons term or the $\\theta$-term in various dimensions. This sheds light on topological insulators and superconductors beyond non-interacting systems, and the underlying topological field theory description thereof. In particular, our string theory realization includes the honeycomb lattice Kitaev model in two spatial dimensions, and its higher-dimensional extensions. Increasing the number of D-branes naturally leads to a realization of topological insulators and superconductors in terms of holography (AdS/CFT).

Shinsei Ryu; Tadashi Takayanagi

2010-08-01T23:59:59.000Z

257

RATIONAL MATERIALS DESIGN THROUGH THEORY AND MODELING The rational design of novel electrical energy storage (EES) systems with high energy and  

E-Print Network [OSTI]

energy storage (EES) systems with high energy and power density will require the development of a full breakthroughs. Although chemical energy storage (batteries) and ECs share common components such as electrodes the research directions for each are presented separately. Chemical Energy Storage Storage of electrical charge

Bazant, Martin Z.

258

1064 IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS--I: FUNDAMENTAL THEORY AND APPLICATIONS, VOL. 46, NO. 9, SEPTEMBER 1999 AER Image Filtering Architecture  

E-Print Network [OSTI]

. 9, SEPTEMBER 1999 AER Image Filtering Architecture for Vision-Processing Systems Teresa Serrano for the realization of real-time two-dimensional (2-D) image filtering in an address- event-representation (AER on another approach, whose popularity has grown recently, which is known as address even representation (AER

Barranco, Bernabe Linares

259

Appears in Perspectives in Mathematical System Theory, Control, and Information Processing, A Festschrift in honor of Yutaka Yamamoto on the Occasion of his sixtieth birthday,  

E-Print Network [OSTI]

law). Power and energy that enter a circuit is defined for ports. Terminals are for interconnection, ports are for energy transfer. A port of a mechanical system is a set of terminals that satisfy port on the other hand. Interconnection happens via terminals, while energy transfer happens via ports. We consider

260

Motorcycle Emissions System Multireflection Optics for non-  

E-Print Network [OSTI]

Motorcycle Emissions System Multireflection Optics for non- contact measurement of small emissions-2580 FAX 2587 · e-mail dstedman @ DU.edu · www.feat.biochem.du.edu #12;End view of six-pass optical system #12;#12;#12;#12;Side view of ramp and optics #12;#12;#12;Motorcycle Emissions · Measurement of 90cc

Denver, University of

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


261

Hybrid Dynamic Density Functional Theory for Polymer Melts and Blends  

E-Print Network [OSTI]

We propose a high-speed and accurate hybrid dynamic density functional theory for the computer simulations of the phase separation processes of polymer melts and blends. The proposed theory is a combination of the dynamic self-consistent field (SCF) theory and a time-dependent Ginzburg-Landau type theory with the random phase approximation (GRPA). The SCF theory is known to be accurate in evaluating the free energy of the polymer systems in both weak and strong segregation regions although it has a disadvantage of the requirement of a considerable amount of computational cost. On the other hand, the GRPA theory has an advantage of much smaller amount of required computational cost than the SCF theory while its applicability is limited to the weak segregation region. To make the accuracy of the SCF theory and the high-performance of the GRPA theory compatible, we adjust the chemical potential of the GRPA theory by using the SCF theory every constant time steps in the dynamic simulations. The performance of the GRPA and the hybrid theories is tested by using several systems composed of an A/B homopolymer, an AB diblock copolymer, or an ABC triblock copolymer. Using the hybrid theory, we succeeded in reproducing the metastable complex phase-separated domain structures of an ABC triblock copolymer observed by experiments.

Takashi Honda; Toshihiro Kawakatsu

2006-09-05T23:59:59.000Z

262

Magnetism Theory Group / POSTECH Magnetism Theory Group / POSTECH  

E-Print Network [OSTI]

Magnetism Theory Group / POSTECH #12;Magnetism Theory Group / POSTECH #12;Magnetism Theory Group / POSTECH #12;Magnetism Theory Group / POSTECH #12;Magnetism Theory Group / POSTECH J.H . Park et al. #12;'s of FeinCsm e tal The chargeandorbitalordering geom etryin YB a C o 2 O 5 S. K. Kwon etal .Magnetism Theory

Min, Byung Il

263

Density Functional Theory for Superconductors  

E-Print Network [OSTI]

Density Functional Theory for Superconductors LATHIOTAKIS, A. MARQUES, 1,2,3 LU DERS, L. FAST, 2004 words: theory superconductors; density functional theory; critical temperature; exchange matter physics theoretical chemistry is density functional theory (DFT). foundations were established mid

Gross, E.K.U.

264

Techno-Economic Analysis of Bioconversion of Methane into Biofuel and Biochemical (Poster)  

SciTech Connect (OSTI)

In light of the relatively low price of natural gas and increasing demands of liquid transportation fuels and high-value chemicals, attention has begun to turn to novel biocatalyst for conversion of methane (CH4) into biofuels and biochemicals [1]. A techno-economic analysis (TEA) was performed for an integrated biorefinery process using biological conversion of methane, such as carbon yield, process efficiency, productivity (both lipid and acid), natural gas and other raw material prices, etc. This analysis is aimed to identify research challenges as well provide guidance for technology development.

Fei, Q.; Tao, L.; Pienkos, P .T.; Guarnieri, M.; Palou-Rivera, I.

2014-10-01T23:59:59.000Z

265

Genomic and biochemical approaches in the discovery of mechanisms for selective neuronal vulnerability to oxidative stress  

E-Print Network [OSTI]

ral ssBioMed CentBMC Neuroscience Open AcceResearch article Genomic and biochemical approaches in the discovery of mechanisms for selective neuronal vulnerability to oxidative stress Xinkun Wang*1,2, Asma Zaidi2,3, Ranu Pal1,2, Alexander S Garrett4...: Daiichi Sankyo Inc., Two Hilton Court, Parsippany, NJ 07054, USA Email: Xinkun Wang* - xwang@ku.edu; Asma Zaidi - azaidi@kcumb.edu; Ranu Pal - ranupal@ku.edu; Alexander S Garrett - asg@stowers- institute.org; Rogelio Braceras - rbraceras@dsus.com; Xue...

Wang, Xinkun; Zaidi, Asma; Pal, Ranu; Garrett, Alexander S.; Braceras, Rogelio; Chen, Xue-wen; Michaelis, Mary L.; Michaelis, Elias K.

2009-02-19T23:59:59.000Z

266

Biochemical Conversion Pilot Plant (Fact Sheet), NREL (National Renewable Energy Laboratory)  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE:1 First Use of Energy for All Purposes (Fuel and Nonfuel),Feet) Year Jan Feb Mar Apr MayAtmospheric Optical Depth (AOD)ProductssondeadjustsondeadjustAboutScienceCareers Apply for aCould WorkVehicles,000 mrem SiteBiochemical

267

Migration revisited using the Category Theory: Application to Biological Modelling Languages  

E-Print Network [OSTI]

on the system theory appeared [2]. Within that range, Modelica [3], Stella [4] and SIMILE [5], for instance

Boyer, Edmond

268

Handheld 2-channel impedimetric cell counting system with embedded real-time processing  

E-Print Network [OSTI]

Lab-on-a-chip systems have been attracting a growing attention for the perspective of miniaturization and portability of bio-chemical assays. Here we present a the design and characterization of a miniaturized, USB-powered, ...

Rottigni, A.

269

Conformational dynamics control catalysis in disparate systems : structural insights from DNA repair and antibiotic biosynthetic enzymes  

E-Print Network [OSTI]

Chemical reactions allow biological systems to function. The majority of these biochemical reactions occur due to the work of protein catalysts known as enzymes. These biocatalysts are often thought of as pre-formed, static ...

Setser, Jeremy Wayne

2014-01-01T23:59:59.000Z

270

Global-to-local incompatibility, monogamy of entanglement, and ground-state dimerization: Theory and observability of quantum frustration in systems with competing interactions  

E-Print Network [OSTI]

Frustration in quantum many body systems is quantified by the degree of incompatibility between the local and global orders associated, respectively, to the ground states of the local interaction terms and the global ground state of the total many-body Hamiltonian. This universal measure is bounded from below by the ground-state bipartite block entanglement. For many-body Hamiltonians that are sums of two-body interaction terms, a further inequality relates quantum frustration to the pairwise entanglement between the constituents of the local interaction terms. This additional bound is a consequence of the limits imposed by monogamy on entanglement shareability. We investigate the behavior of local pair frustration in quantum spin models with competing interactions on different length scales and show that valence bond solids associated to exact ground-state dimerization correspond to a transition from generic frustration, i.e. geometric, common to classical and quantum systems alike, to genuine quantum frustration, i.e. solely due to the non-commutativity of the different local interaction terms. We discuss how such frustration transitions separating genuinely quantum orders from classical-like ones are detected by observable quantities such as the static structure factor and the interferometric visibility.

S. M. Giampaolo; B. C. Hiesmayr; F. Illuminati

2015-01-25T23:59:59.000Z

271

Covariant Spectator Theory: Foundations and Applications A Mini-Review of the Covariant Spectator Theory  

SciTech Connect (OSTI)

We provide a short overview of the Covariant Spectator Theory and its applications. The basic ideas are introduced through the example of a {phi}{sup 4}-type theory. High-precision models of the two-nucleon interaction are presented and the results of their use in calculations of properties of the two- and three-nucleon systems are discussed. A short summary of applications of this framework to other few-body systems is also presented.

Alfred Stadler, Franz Gross

2010-10-01T23:59:59.000Z

272

Hardy's non-locality and generalized non-local theory  

E-Print Network [OSTI]

Hardy's non-locality theorem for multiple two-level systems is explored in the context of generalized nonlocal theory. We find nonlocal but non-signaling probabilities, providing Hardy's nonlocal argument, which are higher than those in Quantum Mechanics. Maximum probability of success of Hardy's argument is obtained for three two-level systems in quantum as well as in a more generalized theory. Interestingly, the maximum in the nonlocal generalized theory for both the cases turns out to be same.

Sujit K. Choudhary; Sibasish Ghosh; Guruprasad Kar; Samir Kunkri; Ramij Rahaman; Anirban Roy

2011-10-31T23:59:59.000Z

273

Quantum feedback control and classical control theory  

SciTech Connect (OSTI)

We introduce and discuss the problem of quantum feedback control in the context of established formulations of classical control theory, examining conceptual analogies and essential differences. We describe the application of state-observer-based control laws, familiar in classical control theory, to quantum systems and apply our methods to the particular case of switching the state of a particle in a double-well potential. (c) 2000 The American Physical Society.

Doherty, Andrew C. [Department of Physics, University of Auckland, Private Bag 92019, Auckland, (New Zealand)] [Department of Physics, University of Auckland, Private Bag 92019, Auckland, (New Zealand); Habib, Salman [Theoretical Division, T-8, Los Alamos National Laboratory, Los Alamos, New Mexico 87545 (United States)] [Theoretical Division, T-8, Los Alamos National Laboratory, Los Alamos, New Mexico 87545 (United States); Jacobs, Kurt [Theoretical Division, T-8, Los Alamos National Laboratory, Los Alamos, New Mexico 87545 (United States)] [Theoretical Division, T-8, Los Alamos National Laboratory, Los Alamos, New Mexico 87545 (United States); Mabuchi, Hideo [Norman Bridge Laboratory of Physics 12-33, California Institute of Technology, Pasadena, California 91125 (United States)] [Norman Bridge Laboratory of Physics 12-33, California Institute of Technology, Pasadena, California 91125 (United States); Tan, Sze M. [Department of Physics, University of Auckland, Private Bag 92019, Auckland, (New Zealand)] [Department of Physics, University of Auckland, Private Bag 92019, Auckland, (New Zealand)

2000-07-01T23:59:59.000Z

274

Comparison between Gaussian-type orbitals and plane wave ab initio density functional theory modeling of layer silicates: Talc [Mg{sub 3}Si{sub 4}O{sub 10}(OH){sub 2}] as model system  

SciTech Connect (OSTI)

The quantum chemical characterization of solid state systems is conducted with many different approaches, among which the adoption of periodic boundary conditions to deal with three-dimensional infinite condensed systems. This method, coupled to the Density Functional Theory (DFT), has been proved successful in simulating a huge variety of solids. Only in relatively recent years this ab initio quantum-mechanic approach has been used for the investigation of layer silicate structures and minerals. In the present work, a systematic comparison of different DFT functionals (GGA-PBEsol and hybrid B3LYP) and basis sets (plane waves and all-electron Gaussian-type orbitals) on the geometry, energy, and phonon properties of a model layer silicate, talc [Mg{sub 3}Si{sub 4}O{sub 10}(OH){sub 2}], is presented. Long range dispersion is taken into account by DFT+D method. Results are in agreement with experimental data reported in literature, with minimal deviation given by the GTO/B3LYP-D* method regarding both axial lattice parameters and interaction energy and by PW/PBE-D for the unit-cell volume and angular values. All the considered methods adequately describe the experimental talc infrared spectrum.

Ulian, Gianfranco; Valdrè, Giovanni, E-mail: giovanni.valdre@unibo.it [Dipartimento di Scienze Biologiche e Geologico-Ambientali, Centro di Ricerca Interdisciplinare di Biomineralogia, Cristallografia e Biomateriali, Università di Bologna “Alma Mater Studiorum” Piazza di Porta San Donato 1, 40126 Bologna (Italy)] [Dipartimento di Scienze Biologiche e Geologico-Ambientali, Centro di Ricerca Interdisciplinare di Biomineralogia, Cristallografia e Biomateriali, Università di Bologna “Alma Mater Studiorum” Piazza di Porta San Donato 1, 40126 Bologna (Italy); Tosoni, Sergio [Departament de Química Física and Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/ Martí i Franquès 1, E-08028 Barcelona (Spain)] [Departament de Química Física and Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/ Martí i Franquès 1, E-08028 Barcelona (Spain)

2013-11-28T23:59:59.000Z

275

Mixed quantum/classical theory for inelastic scattering of asymmetric-top-rotor + atom in the body-fixed reference frame and application to the H{sub 2}O + He system  

SciTech Connect (OSTI)

The mixed quantum/classical theory (MQCT) for inelastic molecule-atom scattering developed recently [A. Semenov and D. Babikov, J. Chem. Phys. 139, 174108 (2013)] is extended to treat a general case of an asymmetric-top-rotor molecule in the body-fixed reference frame. This complements a similar theory formulated in the space-fixed reference-frame [M. Ivanov, M.-L. Dubernet, and D. Babikov, J. Chem. Phys. 140, 134301 (2014)]. Here, the goal was to develop an approximate computationally affordable treatment of the rotationally inelastic scattering and apply it to H{sub 2}O + He. We found that MQCT is somewhat less accurate at lower scattering energies. For example, below E = 1000 cm{sup ?1} the typical errors in the values of inelastic scattering cross sections are on the order of 10%. However, at higher scattering energies MQCT method appears to be rather accurate. Thus, at scattering energies above 2000 cm{sup ?1} the errors are consistently in the range of 1%–2%, which is basically our convergence criterion with respect to the number of trajectories. At these conditions our MQCT method remains computationally affordable. We found that computational cost of the fully-coupled MQCT calculations scales as n{sup 2}, where n is the number of channels. This is more favorable than the full-quantum inelastic scattering calculations that scale as n{sup 3}. Our conclusion is that for complex systems (heavy collision partners with many internal states) and at higher scattering energies MQCT may offer significant computational advantages.

Semenov, Alexander [Chemistry Department, Wehr Chemistry Building, Marquette University, Milwaukee, Wisconsin 53201-1881 (United States); PSL Research University, Observatoire de Paris, Sorbonne Universités, UPMC Univ Paris 06, ENS, UCP, CNRS, UMR8112, LERMA, 5 Place Janssen, 92195 Meudon (France); Dubernet, Marie-Lise [PSL Research University, Observatoire de Paris, Sorbonne Universités, UPMC Univ Paris 06, ENS, UCP, CNRS, UMR8112, LERMA, 5 Place Janssen, 92195 Meudon (France); Babikov, Dmitri, E-mail: dmitri.babikov@mu.edu [Chemistry Department, Wehr Chemistry Building, Marquette University, Milwaukee, Wisconsin 53201-1881 (United States)

2014-09-21T23:59:59.000Z

276

Original research What was the programme theory of New Labour's  

E-Print Network [OSTI]

Original research What was the programme theory of New Labour's Health System Reforms? Ross Millar The King's Fund, London, UK Objectives: To examine whether the Health System Reforms delivered the promise of being a coherent and mutually supporting reform programme; to identify the underlying programme theory

Birmingham, University of

277

Theory Modeling and Simulation  

SciTech Connect (OSTI)

Los Alamos has a long history in theory, modeling and simulation. We focus on multidisciplinary teams that tackle complex problems. Theory, modeling and simulation are tools to solve problems just like an NMR spectrometer, a gas chromatograph or an electron microscope. Problems should be used to define the theoretical tools needed and not the other way around. Best results occur when theory and experiments are working together in a team.

Shlachter, Jack [Los Alamos National Laboratory

2012-08-23T23:59:59.000Z

278

Automated Lattice Perturbation Theory  

SciTech Connect (OSTI)

I review recent developments in automated lattice perturbation theory. Starting with an overview of lattice perturbation theory, I focus on the three automation packages currently "on the market": HiPPy/HPsrc, Pastor and PhySyCAl. I highlight some recent applications of these methods, particularly in B physics. In the final section I briefly discuss the related, but distinct, approach of numerical stochastic perturbation theory.

Monahan, Christopher

2014-11-01T23:59:59.000Z

279

Effective medium theory  

SciTech Connect (OSTI)

New applications of the theory of homogenization for heterogeneous metamaterials, in particular for acoustic cloaking and for design and engineering of tunable phononic crystal.

Krokhin, Arkadii [Univ. of North Texas, Denton, TX (United States)

2014-04-18T23:59:59.000Z

280

Optimization of Enzymatic Biochemical Logic for Noise Reduction and Scalability: How Many Biocomputing Gates Can Be Interconnected in a Circuit?  

E-Print Network [OSTI]

We report an experimental evaluation of the "input-output surface" for a biochemical AND gate. The obtained data are modeled within the rate-equation approach, with the aim to map out the gate function and cast it in the language of logic variables appropriate for analysis of Boolean logic for scalability. In order to minimize "analog" noise, we consider a theoretical approach for determining an optimal set for the process parameters to minimize "analog" noise amplification for gate concatenation. We establish that under optimized conditions, presently studied biochemical gates can be concatenated for up to order 10 processing steps. Beyond that, new paradigms for avoiding noise build-up will have to be developed. We offer a general discussion of the ideas and possible future challenges for both experimental and theoretical research for advancing scalable biochemical computing.

V. Privman; G. Strack; D. Solenov; M. Pita; E. Katz

2008-09-13T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


281

Utility Theory Social Intelligence  

E-Print Network [OSTI]

Utility Theory Social Intelligence Daniel Polani Utility Theory ­ p.1/15 Utilities: Motivation Consider: game scenario For Instance: 2-or-more players Necessary: development of concept for utilities decisions sequential decisions (time) games Utility The Prototypical Scenario Consider: agent that can take

Polani, Daniel

282

Elementary Particle Theory  

SciTech Connect (OSTI)

This final report describes the activities of the high energy theory group at Syracuse University for the period 1 January 2010 through April 30 2013. The research conducted by the group includes lattice gauge theory, non-commutative geometry, phenomenology and mathematical physics.

Catterall, Simon [Syracuse University] [Syracuse University; Hubisz, Jay [Syracuse University] [Syracuse University; Balachandran, Aiyalam [Syracuse University] [Syracuse University; Schechter, Joe [Syracuse University] [Syracuse University

2013-01-05T23:59:59.000Z

283

Democratic Neutrino Theory  

E-Print Network [OSTI]

New theory of neutrino masses and mixing is introduced. This theory is based on a simple S_3 symmetric democratic neutrino mass matrix, and predicts the neutrino mass spectrum of normal ordering. Taking into account the matter effect and proper averaging of the oscillations, this theory agrees with the variety of atmospheric, solar and accelerator neutrino data. Moreover, the absolute scale of the neutrino masses m of 0.03 eV is determined in this theory, using the atmospheric neutrino oscillation data. In case of tiny perturbations in the democratic mass matrix only one this scale parameter m allows to explain the mentioned above neutrino results, and the theory has huge predictive power.

Dmitry Zhuridov

2014-05-21T23:59:59.000Z

284

The Theory Of Gravity  

E-Print Network [OSTI]

In the framework of the special theory of relativity, the relativistic theory of gravitation (RTG) is constructed. The energy-momentum tensor density of all the matter fields (including gravitational one) is treated as a source of the gravitational field. The energy-momentum and the angular momentum conservation laws are fulfilled in this theory. Such an approach permits us to unambiguously construct the gravitional field theory as a gauge theory. According to the RTG, the homogeneous and isotropic Universe is to be ``flat''. It evolves cyclewise from some maximal density to the minimal one, etc. The book is designed for scientific workers, post-graduates and upper-year students majoring in theoretical physics.

A. A. Logunov

2002-10-21T23:59:59.000Z

285

Geometric perturbation theory and plasma physics  

SciTech Connect (OSTI)

Modern differential geometric techniques are used to unify the physical asymptotics underlying mechanics, wave theory and statistical mechanics. The approach gives new insights into the structure of physical theories and is suited to the needs of modern large-scale computer simulation and symbol manipulation systems. A coordinate-free formulation of non-singular perturbation theory is given, from which a new Hamiltonian perturbation structure is derived and related to the unperturbed structure. The theory of perturbations in the presence of symmetry is developed, and the method of averaging is related to reduction by a circle group action. The pseudo-forces and magnetic Poisson bracket terms due to reduction are given a natural asymptotic interpretation. Similar terms due to changing reference frames are related to the method of variation of parameters, which is also given a Hamiltonian formulation. These methods are used to answer a question about nearly periodic systems. The answer leads to a new secular perturbation theory that contains no ad hoc elements. Eikonal wave theory is given a Hamiltonian formulation that generalizes Whitham's Lagrangian approach. The evolution of wave action density on ray phase space is given a Hamiltonian structure using a Lie-Poisson bracket. The relationship between dissipative and Hamiltonian systems is discussed. A new type of attractor is defined which attracts both forward and backward in time and is shown to occur in infinite-dimensional Hamiltonian systems with dissipative behavior. The theory of Smale horseshoes is applied to gyromotion in the neighborhood of a magnetic field reversal and the phenomenon of reinsertion in area-preserving horseshoes is introduced. The central limit theorem is proved by renormalization group techniques. A natural symplectic structure for thermodynamics is shown to arise asymptotically from the maximum entropy formalism.

Omohundro, S.M.

1985-04-04T23:59:59.000Z

286

Quantum theory from one global symmetry  

E-Print Network [OSTI]

It is shown that unitary quantum theory is not only consistent with but follows from decompositional equivalence: the principle that there is no preferred decomposition of the universe into systems, or alternatively, that there is no preferred quantum reference frame. Decompositional equivalence requires unitary quantum theory to be both observer- and scale-independent, requires time, "systems" and all classical information to be strictly observer-relative, and imposes an unavoidable free-energy cost on the acquisition of observational outcomes. This free energy cost of observation is characterized from first principles and shown to accord with known costs of information acquisition and storage by human observers.

Chris Fields

2014-06-17T23:59:59.000Z

287

Microfluidic Technology Platforms for Synthesizing, Labeling and Measuring the Kinetics of Transport and Biochemical Reactions for Developing Molecular Imaging Probes  

SciTech Connect (OSTI)

Radiotracer techniques are used in environmental sciences, geology, biology and medicine. Radiotracers with Positron Emission Tomography (PET) provided biological examinations of ~3 million patients 2008. Despite the success of positron labeled tracers in many sciences, there is limited access in an affordable and convenient manner to develop and use new tracers. Integrated microfluidic chips are a new technology well matched to the concentrations of tracers. Our goal is to develop microfluidic chips and new synthesis approaches to enable wide dissemination of diverse types of tracers at low cost, and to produce new generations of radiochemists for which there are many unfilled jobs. The program objectives are to: 1. Develop an integrated microfluidic platform technology for synthesizing and 18F-labeling diverse arrays of different classes of molecules. 2. Incorporate microfluidic chips into small PC controlled devices (“Synthesizer”) with a platform interfaced to PC for electronic and fluid input/out control. 3. Establish a de-centralized model with Synthesizers for discovering and producing molecular imaging probes, only requiring delivery of inexpensive [18F]fluoride ion from commercial PET radiopharmacies vs the centralized approach of cyclotron facilities synthesizing and shipping a few different types of 18F-probes. 4. Develop a position sensitive avalanche photo diode (PSAPD) camera for beta particles embedded in a microfluidic chip for imaging and measuring transport and biochemical reaction rates to valid new 18F-labeled probes in an array of cell cultures. These objectives are met within a research and educational program integrating radio-chemistry, synthetic chemistry, biochemistry, engineering and biology in the Crump Institute for Molecular Imaging. The Radiochemistry Training Program exposes PhD and post doctoral students to molecular imaging in vitro in cells and microorganisms in microfluidic chips and in vivo with PET, from new technologies for radiochemistry (macro to micro levels), biochemistry and biology to imaging principles, tracer kinetics, pharmacokinetics and biochemical assays. New generations of radiochemists will be immersed in the biochemistry and biology for which their labeled probes are being developed for assays of these processes. In this program engineers and radio-chemists integrate the principles of microfluidics and radiolabeling along with proper system design and chemistry rule sets to yield Synthesizers enabling biological and pharmaceutical scientists to develop diverse arrays of probes to pursue their interests. This progression would allow also radiochemists to focus on the further evolution of rapid, high yield synthetic reactions with new enabling technologies, rather than everyday production of radiotracers that should be done by technologists. The invention of integrated circuits in electronics established a platform technology that allowed an evolution of ideas and applications far beyond what could have been imagined at the beginning. Rather than provide a technology for the solution to a single problem, it is hoped that microfluidic radiochemistry will be an enabling platform technology for others to solve many problems. As part of this objective, another program goal is to commercialize the technologies that come from this work so that they can be provided to others who wish to use it.

Phelps, Michael E.

2009-09-01T23:59:59.000Z

288

Nonholonomic Hamilton-Jacobi Theory via Chaplygin Hamiltonization  

E-Print Network [OSTI]

We develop Hamilton-Jacobi theory for Chaplygin systems, a certain class of nonholonomic mechanical systems with symmetries, using a technique called Hamiltonization, which transforms nonholonomic systems into Hamiltonian systems. We give a geometric account of the Hamiltonization, identify necessary and sufficient conditions for Hamiltonization, and apply the conventional Hamilton-Jacobi theory to the Hamiltonized systems. We show, under a certain sufficient condition for Hamiltonization, that the solutions to the Hamilton-Jacobi equation associated with the Hamiltonized system also solve the nonholonomic Hamilton-Jacobi equation associated with the original Chaplygin system. The results are illustrated through several examples.

Tomoki Ohsawa; Oscar E. Fernandez; Anthony M. Bloch; Dmitry V. Zenkov

2011-02-21T23:59:59.000Z

289

Identification of Catalysts and Materials for a High-Energy Density Biochemical Fuel Cell: Cooperative Research and Development Final Report, CRADA Number CRD-09-345  

SciTech Connect (OSTI)

The proposed research attempted to identify novel biochemical catalysts, catalyst support materials, high-efficiency electron transfer agents between catalyst active sites and electrodes, and solid-phase electrolytes in order to maximize the current density of biochemical fuel cells that utilize various alcohols as substrates.

Ghirardi, M.; Svedruzic, D.

2013-07-01T23:59:59.000Z

290

Set theory and physics  

SciTech Connect (OSTI)

Inasmuch as physical theories are formalizable, set theory provides a framework for theoretical physics. Four speculations about the relevance of set theoretical modeling for physics are presented: the role of transcendental set theory (i) in chaos theory, (ii) for paradoxical decompositions of solid three-dimensional objects, (iii) in the theory of effective computability (Church-Turing thesis) related to the possible {open_quotes}solution of supertasks,{close_quotes} and (iv) for weak solutions. Several approaches to set theory and their advantages and disadvantages for physical applications are discussed: Cantorian {open_quotes}naive{close_quotes} (i.e., nonaxiomatic) set theory, contructivism, and operationalism. In the author`s opinion, an attitude, of {open_quotes}suspended attention{close_quotes} (a term borrowed from psychoanalysis) seems most promising for progress. Physical and set theoretical entities must be operationalized wherever possible. At the same time, physicists should be open to {open_quotes}bizarre{close_quotes} or {open_quotes}mindboggling{close_quotes} new formalisms, which need not be operationalizable or testable at the time of their creation, but which may successfully lead to novel fields of phenomenology and technology.

Svozil, K. [Univ. of Technology, Vienna (Austria)

1995-11-01T23:59:59.000Z

291

Theory of rheology in confinement  

E-Print Network [OSTI]

The viscosity of fluids is generally understood in terms of kinetic mechanisms, i.e., particle collisions, or thermodynamic ones as imposed through structural distortions upon e.g. applying shear. Often the former is less relevant, and (damped) Brownian particles are considered good fluid model systems. We formulate a general theoretical approach for rheology in confinement, based on the many particle diffusion equation, evaluated via classical density functional theory. We discuss the viscosity for the situation of two parallel walls in relative motion as a function of wall-to-wall distance.

Artem A. Aerov; Matthias Krüger

2014-12-12T23:59:59.000Z

292

Thermodynamic theory of kinetic overshoots  

E-Print Network [OSTI]

Everything that is not prohibited is permissible. So, what is prohibited in the course of chemical reactions, heat transfer and other dissipative processes? Is it possible to "overshoot" the equilibrium, and if yes, then how far? Thermodynamically allowed and prohibited trajectories of processes are discussed by the example of effects of equilibrium encircling. The complete theory of thermodynamically accessible states is presented. The space of all thermodynamically admissible paths is presented by projection on the "thermodynamic tree", that is the tree of the related thermodynamic potential (entropy, free energy, free enthalpy) in the balance polyhedron. The stationary states and limit points for open systems are localized too.

A. N. Gorban; G. S. Yablonsky

2005-05-19T23:59:59.000Z

293

Hamilton-Jacobi Theory in k-Symplectic Field Theories  

E-Print Network [OSTI]

In this paper we extend the geometric formalism of Hamilton-Jacobi theory for Mechanics to the case of classical field theories in the k-symplectic framework.

M. De LeÓn; D. MartÍn De Diego; J. C. Marrero; M. Salgado; S. Vilariño

2010-05-10T23:59:59.000Z

294

Biochem. J. (2013) 449, 167173 (Printed in Great Britain) doi:10.1042/BJ20121271 167 Cytosolic [Ca2 +  

E-Print Network [OSTI]

Biochem. J. (2013) 449, 167­173 (Printed in Great Britain) doi:10.1042/BJ20121271 167 Cytosolic [Ca* *Department of Neurobiology and Behavior, University of California, Irvine, CA 92697, U.S.A., and Department of Physiology and Biophysics, University of California, Irvine, CA 92697, U.S.A. InsP3-mediated puffs

Parker, Ian

295

Micromorphological and (bio)chemical organic matter changes in a formerly cutover peat bog : Le Russey, Jura Mountains, France.  

E-Print Network [OSTI]

Micromorphological and (bio)chemical organic matter changes in a formerly cutover peat bog : Le. In order to moniter peat reaccumulation and hence long-term carbon sequestration in peatlands which have ([1]). Among these indicators, it has previously been shown that physico-chemical properties of peat

Paris-Sud XI, Université de

296

Eur. J. Biochem. 85, 529-534 (1978) X-Ray and Neutron Small-Angle Scattering Studies  

E-Print Network [OSTI]

Eur. J. Biochem. 85, 529-534 (1978) X-Ray and Neutron Small-Angle Scattering Studies of the Complex-ray and neutron scattering techniques. In this work, we concentrated mainly on radius of gyration analyses and a neutron scattering experiment is performed in 21-Iz0 solvent. This decrease simply reflects the fact

297

210 Biochemical Society Transactions (2012) Volume 40, part 1 PKA phosphorylation of the small heat-shock  

E-Print Network [OSTI]

210 Biochemical Society Transactions (2012) Volume 40, part 1 PKA phosphorylation of the small heat The small heat-shock protein Hsp20 (heat-shock protein 20), also known as HspB6, has been shown to protect infarcts, and improved recovery of contractile performance during the reperfusion phase, compared with wild

Scott, John D.

2012-01-01T23:59:59.000Z

298

Molecular structure and biochemical properties of lignins in relation to possible self-organization of lignin networks  

E-Print Network [OSTI]

Molecular structure and biochemical properties of lignins in relation to possible self-organization of lignin networks B. Monties Laboratoire de Chimie Biologique, INRA (CBAI), Institut National Agronomique recalls chemical data related to the variations in the molecular structure of lignin and mainly discusses

Paris-Sud XI, Université de

299

Anomalies and Invertible Field Theories  

E-Print Network [OSTI]

We give a modern geometric viewpoint on anomalies in quantum field theory and illustrate it in a 1-dimensional theory: supersymmetric quantum mechanics. This is background for the resolution of worldsheet anomalies in orientifold superstring theory.

Daniel S. Freed

2014-06-21T23:59:59.000Z

300

Data Modeling and Theory Construction  

E-Print Network [OSTI]

MODELING AND THEORY CONSTRUCTION F. Suppe. The Structure ofMODELING AND THEORY CONSTRUCTION JAN DE LEEUW This paper wasMODELING AND THEORY CONSTRUCTION F????? 1. The Scientist

Jan de Leeuw

2011-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


301

G. Tsoulos (Ed.), MIMO System Technology for Wireless Communications, CRC & Taylor and Francis, Boca Raton, 2006. 20-Jul-05 Chapter 3: Information Theory and Electromagnetism: Are They Related? 1(37)  

E-Print Network [OSTI]

, Boca Raton, 2006. 20-Jul-05 Chapter 3: Information Theory and Electromagnetism: Are They Related? 1(37) INFORMATION THEORY AND ELECTROMAGNETISM: ARE THEY RELATED? Sergey Loyka1 , Juan Mosig2 1 School of Information [9-14]. Electromagnetic waves are used as the primary carrier of information. The basic

Loyka, Sergey

302

NASA Heliophysics Theory Program  

E-Print Network [OSTI]

to the NASA Heliophysics Theory Program Proposal # 07-HTP07-0015 DYNAMICS OF MAGNETOSPHERE Announcement Number NNH07ZDA001N-HTP Dynamics of Magnetosphere-Ionosphere Coupling Project Summary Objectives

Lotko, William

303

Preemption Games: Theory and Experiment*  

E-Print Network [OSTI]

of Investment: Extensions of Real Options Theory and Timingand Perraudin, W. , 2003, “Real options and preemption underand the theory of real options. We also characterize simpler

Anderson, Steven T; Friedman, Daniel; Oprea, Ryan

2008-01-01T23:59:59.000Z

304

ALS Evidence Confirms Combustion Theory  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

ALS Evidence Confirms Combustion Theory ALS Evidence Confirms Combustion Theory Print Wednesday, 22 October 2014 11:43 Researchers recently uncovered the first step in the process...

305

Systems Theory for Pharmaceutical Drug Discovery  

E-Print Network [OSTI]

3):371–381, 2002. [204] Alan Turing. The chemical basis ofwas the seminal paper by Alan Turing on morphogenesis. The

Aswani, Anil Jayanti

2010-01-01T23:59:59.000Z

306

Theory of Dipole Induced Electromagnetic Transparency  

E-Print Network [OSTI]

A detailed theory describing linear optics of vapors comprised of interacting multi-level quantum emitters is proposed. It is shown both by direct integration of Maxwell-Bloch equations and using a simple analytical model that at large densities narrow transparency windows appear in otherwise completely opaque spectra. The existence of such windows is attributed to overlapping resonances. This effect, first introduced for three-level systems in [R. Puthumpally-Joseph, M. Sukharev, O. Atabek and E. Charron, Phys. Rev. Lett. 113, 163603 (2014)], is due to strongly enhanced dipole-dipole interactions at high emitters' densities. The presented theory extends this effect to the case of multilevel systems. The theory is applied to the D1 transitions of interacting Rb-85 atoms. It is shown that at high atomic densities, Rb-85 atoms can behave as three-level emitters exhibiting all the properties of dipole induced electromagnetic transparency. Applications including slow light and laser pulse shaping are also propose...

Puthumpally-Joseph, Raiju; Sukharev, Maxim; Charron, Eric

2015-01-01T23:59:59.000Z

307

Constructor Theory of Life  

E-Print Network [OSTI]

Neo-Darwinian evolutionary theory explains how the appearance of purposive design in the sophisticated adaptations of living organisms can have come about without their intentionally being designed. The explanation relies crucially on the possibility of certain physical processes: mainly, gene replication and natural selection. In this paper I show that for those processes to be possible without the design of biological adaptations being encoded in the laws of physics, those laws must have certain other properties. The theory of what these properties are is not part of evolution theory proper, and has not been developed, yet without it the neo-Darwinian theory does not fully achieve its purpose of explaining the appearance of design. To this end I apply Constructor Theory's new mode of explanation to provide an exact formulation of the appearance of design, of no-design laws, and of the logic of self-reproduction and natural selection, within fundamental physics. I conclude that self-reproduction, replication and natural selection are possible under no-design laws, the only non-trivial condition being that they allow digital information to be physically instantiated. This has an exact characterisation in the constructor theory of information. I also show that under no-design laws an accurate replicator requires the existence of a "vehicle" constituting, together with the replicator, a self-reproducer.

Chiara Marletto

2014-11-04T23:59:59.000Z

308

Particle-Number Projection and the Density Functional Theory  

E-Print Network [OSTI]

In the framework of the Density Functional Theory for superconductors, we study the restoration of the particle number symmetry by means of the projection technique. Conceptual problems are outlined and numerical difficulties are discussed. Both are related to the fact that neither the many-body Hamiltonian nor the wave function of the system appear explicitly in the Density Functional Theory. Similar obstacles are encountered in self-consistent theories utilizing density-dependent effective interactions.

J. Dobaczewski; M. V. Stoitsov; W. Nazarewicz; P. -G. Reinhard

2007-08-03T23:59:59.000Z

309

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory · Compostaje de aves de corralRouchey et al., 2005) Investigación previa #12;Disposal: Science and Theory · Se ha evaluado y documentado el, bovino Investigación previa #12;Disposal: Science and Theory · Experimento nro. 1 Impacto de la espuma en

Benson, Eric R.

310

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory · Opciones para la eliminación · ¿Qué compostaje durante brotes de enfermedades Lista de contenido #12;Disposal: Science and Theory "Ante un brote brotes de IIAP #12;Disposal: Science and Theory · En 2004, se despoblaron 100 millones de aves en todo el

Benson, Eric R.

311

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Foam Used in Actual Outbreak · Water #12;Disposal: Science and Theory Water Based Foam Culling Demo · First large scale comparison · Two:46 (m:s) #12;Disposal: Science and Theory WV H5N2 AIV 2007 · AIV positive turkeys ­ 25,000 turkey farm

Benson, Eric R.

312

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory · Las recomendaciones de campo se la espuma #12;Disposal: Science and Theory · Múltiples especies de aves pueden despoblarse con espuma cesación #12;Disposal: Science and Theory · Dentro de una especie, pueden existir variaciones ­ Los ánades

Benson, Eric R.

313

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory 0 20 40 60 80 100 Compostaje #12;Disposal: Science and Theory · Delmarva fue de las primeras granjas en realizar el compostaje de en EE.UU. en los próximos 10 años. Pionera en compostaje en Delaware #12;Disposal: Science and Theory

Benson, Eric R.

314

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Composting · Composting is defined drop #12;Disposal: Science and Theory Composting · Optimal composting ­ Carbon to nitrogen ratio (C;Disposal: Science and Theory Compost Composition · A variety of supplemental carbon materials have been

Benson, Eric R.

315

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Poultry Farm Daily Disposal Methods 0;Disposal: Science and Theory First Composter in Delaware · Delmarva was of the first daily composting · 120 in USA over next 10 years #12;Disposal: Science and Theory Composting Procedure · Mixture ­ 1 ½ to 2

Benson, Eric R.

316

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory · Gassing is a preferred #12;Disposal: Science and Theory Carbon Dioxide Gassing · Carbon dioxide (CO2) one of the standard sensitivity time #12;Disposal: Science and Theory · Argon-CO2 gas depopulation evaluated under laboratory

Benson, Eric R.

317

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory · Procedimiento básico ­ Desarrollar una pila de carcasas y lecho. Compostaje masivo de emergencia #12;Disposal: Science and Theory de emergencia #12;Disposal: Science and Theory · Desarrollar planes antes de que ocurra una

Benson, Eric R.

318

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Use of Composting · Composting has ­ British Columbia 2009 #12;Disposal: Science and Theory · Initial farm linked to NY LBM · Two additional and pile procedure Delmarva 2004 #12;Disposal: Science and Theory Delmarva 2004 · Composting used

Benson, Eric R.

319

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Summary · Foam is currently a viable ­ Foam application directly to cage #12;Disposal: Science and Theory Legal Status of Foam · Procedure depopulation, culling, and euthanasia #12;Disposal: Science and Theory Acknowledgements · USDA AICAP2 · USDA

Benson, Eric R.

320

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory · El compostaje se ha usado como Virginia (2007) ­ British Columbia (2009) Uso del compostaje #12;Disposal: Science and Theory · Primera apilamiento Delmarva (2004) #12;Disposal: Science and Theory · El compostaje se usó para proteger una densa

Benson, Eric R.

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


321

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Mass Emergency Composting · Basic ­ Create carcass and litter windrow #12;Disposal: Science and Theory Mass Emergency Composting · Basic cover ­ Clean and disinfect house ­ Sample for virus again #12;Disposal: Science and Theory Mass

Benson, Eric R.

322

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory · Se ubica el carretón con el enfriamiento Ventiladores de túnel de viento #12;Disposal: Science and Theory · Se estaciona el remolque en uno: Science and Theory · Se usa un equipo de dos personas para hacer funcionar el sistema: ­ Operario del

Benson, Eric R.

323

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory · El compostaje se define como la: Science and Theory · Compostaje óptimo ­ Relación carbono/nitrógeno (C:N): 20:1 a 35:1 ­ Contenido de Compostaje #12;Disposal: Science and Theory · Se ha utilizado satisfactoriamente una variedad de materiales

Benson, Eric R.

324

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Previous Research · Composting, et.al. 2005; Bendfeldt et al., 2006; DeRouchey et al., 2005) #12;Disposal: Science and Theory: Science and Theory Scientific Validation of Composting · Experiment 1 Impact of foam on composting

Benson, Eric R.

325

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Foam Generator Setup · Drop off foam generator cart at one end of house #12;Disposal: Science and Theory Foam Generator Setup · Trailer parked generator attached to hose #12;Disposal: Science and Theory Foam Generation Begins · Team of two to operate

Benson, Eric R.

326

Numerical techniques for lattice gauge theories  

SciTech Connect (OSTI)

The motivation for formulating gauge theories on a lattice is reviewed. Monte Carlo simulation techniques are then discussed for these systems. Finally, the Monte Carlo methods are combined with renormalization group analysis to give strong numerical evidence for confinement of quarks by non-Abelian gauge fields.

Creutz, M.

1981-02-06T23:59:59.000Z

327

Prequantum Classical Statistical Field Theory: Fundamentals  

SciTech Connect (OSTI)

We present fundamentals of a prequantum model with hidden variables of the classical field type. In some sense this is the comeback of classical wave mechanics. Our approach also can be considered as incorporation of quantum mechanics into classical signal theory. All quantum averages (including correlations of entangled systems) can be represented as classical signal averages and correlations.

Khrennikov, Andrei [International Center for Mathematical Modelling in Physics and Cognitive Sciences, Linnaeus University, Vaexjoe, S-35195 (Sweden)

2011-03-28T23:59:59.000Z

328

Density Functional Theory (DFT) Rob Parrish  

E-Print Network [OSTI]

Density Functional Theory (DFT) Rob Parrish robparrish@gmail.com 1 #12;Agenda · The mechanism Easy to do this Why? Because of Hermitian Operators: Kinetic Energy Density: #12;Density Functional The density completely defines the observable state of the system: The way in which it does so (the functional

Sherrill, David

329

Combining Decision Procedures for Sorted Theories  

E-Print Network [OSTI]

setting, nor is it obvious that the method in fact lifts as is to logics with sorts. To bridge this gap decision procedures for logical theories arises in many areas of computer science and artificial to Nelson and Oppen [8]. This method is at the heart of the verification systems cvc [9], argo-lib [6

Tinelli, Cesare

330

Master's Thesis Density Functional Theory for  

E-Print Network [OSTI]

of the information found during my work. v #12;vi #12;Contents Abstract #12;Abstract This thesis presents a number of results for basic quantum mechanical models intended to be used in the development of density functional theory for systems with edges. Following previous work

Armiento, Rickard

331

On New Conformal Field Theories with Affine Fusion Rules  

E-Print Network [OSTI]

Some time ago, conformal data with affine fusion rules were found. Our purpose here is to realize some of these conformal data, using systems of free bosons and parafermions. The so constructed theories have an extended $W$ algebras which are close analogues of affine algebras. Exact character formulae is given, and the realizations are shown to be full fledged unitary conformal field theories.

Doron Gepner

1999-05-07T23:59:59.000Z

332

Theory Revision in Equation Discovery Ljupco Todorovski and Saso Dzeroski  

E-Print Network [OSTI]

. Section 5 presents the experiments with revising the earth-science equation model. The last sectionTheory Revision in Equation Discovery Ljupco Todorovski and Saso Dzeroski Department of Intelligent than from an initial hypothesis in the space of equations. On the other hand, theory revision systems

Dzeroski, Saso

333

Biochemical and biophysical characterization of the manganese transport regulator (MntR) from Bacillus subtilis  

E-Print Network [OSTI]

a Labconoco Water Pro Plus purification system. Buffers wereby a Labconoco Water Pro Plus purification system. All

Golynskiy, Misha

2007-01-01T23:59:59.000Z

334

Ensemble methods in computational protein and ligand design : applications to the Fc[gamma] immunoglobulin, HIV-1 protease, and ketol-acid reductoisomerase systems  

E-Print Network [OSTI]

This thesis explores the use of ensemble, free energy models in the study and design of molecular, biochemical systems. We use physics based computational models to analyze the molecular basis of binding affinity in the ...

Silver, Nathaniel White

2012-01-01T23:59:59.000Z

335

General Examination in Theory August 2007  

E-Print Network [OSTI]

as semiotics, hermeneutics, gender theory, and Adorno's critical theory. Place cognitive musicology within

Wolfe, Patrick J.

336

Research in particle theory  

SciTech Connect (OSTI)

In the test particle approximation, the scattering amplitude for two-particle scattering in (2+1)-dimensional Chern-Simons-Witten gravity and supergravity was computed and compared to the corresponding metric solutions. The formalism was then extended to the exact gauge theoretic treatment of the two-particle scattering problem and compared to 't Hooft's results from the metric approach. We have studied dynamical symmetry breaking in 2+1 dimensional field theories. We have analyzed strong Extended Technicolor (ETC) models where the ETC coupling is close to a critical value. There are effective scalar fields in each of the theories. We have worked our how such scalar particles can be produced and how they decay. The {phi}{sup 4} field theory was investigated in the Schrodinger representation. The critical behavior was extracted in an arbitrary number of dimensions in second order of a systematic truncation approximation. The correlation exponent agrees with known values within a few percent.

Mansouri, F.; Suranyi, P; Wijewardhana, L.C.R.

1991-10-01T23:59:59.000Z

337

Monolithic piezoelectric sensor (MPS) for sensing chemical, biochemical and physical measurands  

DOE Patents [OSTI]

A piezoelectric sensor and assembly for measuring chemical, biochemical and physical measurands is disclosed. The piezoelectric sensor comprises a piezoelectric material, preferably a crystal, a common metal layer attached to the top surface of the piezoelectric crystal, and a pair of independent resonators placed in close proximity on the piezoelectric crystal such that an efficacious portion of acoustic energy couples between the resonators. The first independent resonator serves as an input port through which an input signal is converted into mechanical energy within the sensor and the second independent resonator serves an output port through which a filtered replica of the input signal is detected as an electrical signal. Both a time delay and an attenuation at a given frequency between the input signal and the filtered replica may be measured as a sensor output. The sensor may be integrated into an assembly with a series feedback oscillator and a radio frequency amplifier to process the desired sensor output. In the preferred embodiment of the invention, a selective film is disposed upon the grounded metal layer of the sensor and the resonators are encapsulated to isolate them from the measuring environment. In an alternative embodiment of the invention, more than two resonators are used in order to increase the resolution of the sensor.

Andle, Jeffrey C. (Bangor, ME); Lec, Ryszard M. (Orono, ME)

2000-01-01T23:59:59.000Z

338

Theory of cargo and membrane trafficking  

E-Print Network [OSTI]

Endocytosis underlies many cellular functions including signaling and nutrient uptake. The endocytosed cargo gets redistributed across a dynamic network of endosomes undergoing fusion and fission. Here, a theoretical approach is reviewed which can explain how the microscopic properties of endosome interactions cause the emergent macroscopic properties of cargo trafficking in the endosomal network. Predictions by the theory have been tested experimentally and include the inference of dependencies and parameter values of the microscopic processes. This theory could also be used to infer mechanisms of signal-trafficking crosstalk. It is applicable to in vivo systems since fixed samples at few time points suffice as input data.

Lionel Foret; Lutz Brusch; Frank Jülicher

2014-12-03T23:59:59.000Z

339

Gravitational lensing in metric theories of gravity  

E-Print Network [OSTI]

Gravitational lensing in metric theories of gravity is discussed. I introduce a generalized approximate metric element, inclusive of both post-post-Newtonian (ppN) contributions and gravito-magnetic field. Following Fermat's principle and standard hyphoteses, I derive the time delay function and deflection angle caused by an isolated mass distribution. Several astrophysical systems are considered. In most of the cases, the gravito-magnetic correction offers the best perspectives for an observational detection. Actual measurements distinguish only marginally different metric theories one from another.

M. Sereno

2003-01-15T23:59:59.000Z

340

Kinetic theory viscosity  

E-Print Network [OSTI]

We show how the viscous evolution of Keplerian accretion discs can be understood in terms of simple kinetic theory. Although standard physics texts give a simple derivation of momentum transfer in a linear shear flow using kinetic theory, many authors, as detailed by Hayashi & Matsuda 2001, have had difficulties applying the same considerations to a circular shear flow. We show here how this may be done, and note that the essential ingredients are to take proper account of, first, isotropy locally in the frame of the fluid and, second, the geometry of the mean flow.

C. J. Clarke; J. E. Pringle

2004-03-17T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


341

Understanding predicted shifts in diazotroph biogeography using resource competition theory  

E-Print Network [OSTI]

We examine the sensitivity of the biogeography of nitrogen fixers to a warming climate and increased aeolian iron deposition in the context of a global earth system model. We employ concepts from the resource-ratio theory ...

Ward, B. A.

342

Structural and Biochemical Investigations of the Mechanism of Heme Capture by the Hemophore HasAp from Pseudomonas aeruginosa  

E-Print Network [OSTI]

(loops). 310-helices, reflecting a gain in secondary structure elements are colored purple (Fig. B and C). ?5* and ?7* (Fig C and D) are new hairpin loops xxii resulting from loss of corresponding beta sheet character. Missing electron density...STRUCTURAL AND BIOCHEMICAL INVESTIGATIONS OF THE MECHANISM OF HEME CAPTURE BY THE HEMOPHORE HasAp SECRETED BY PSEUDOMONAS AERUGINOSA BY GRACE JEPKORIR LAGAT B.Ed. (Sci.), Kenyatta University, 1999 Nairobi, Kenya M.Ed. (Adm.), University...

Lagat, Grace Jepkorir

2011-04-16T23:59:59.000Z

343

High-Dose-Rate Brachytherapy Alone for Localized Prostate Cancer in Patients at Moderate or High Risk of Biochemical Recurrence  

SciTech Connect (OSTI)

Purpose: To evaluate genitourinary (GU) and gastrointestinal (GI) morbidity and biochemical control of disease in patients with localized prostate adenocarcinoma treated with escalating doses per fraction of high-dose rate brachytherapy alone. Methods and Materials: A total of 197 patients were treated with 34 Gy in four fractions, 36 Gy in four fractions, 31.5 Gy in three fractions, or 26 Gy in two fractions. Median follow-up times were 60, 54, 36, and 6 months, respectively. Results: Incidence of early Grade {>=} 3 GU morbidity was 3% to 7%, and Grade 4 was 0% to 4%. During the first 12 weeks, the highest mean International Prostate Symptom Score (IPSS) value was 14, and between 6 months and 5 years it was 8. Grade 3 or 4 early GI morbidity was not observed. The 3-year actuarial rate of Grade 3 GU was 3% to 16%, and was 3% to 7% for strictures requiring surgery (4-year rate). An incidence of 1% Grade 3 GI events was seen at 3 years. Late Grade 4 GU or GI events were not observed. At 3 years, 99% of patients with intermediate-risk and 91% with high-risk disease were free of biochemical relapse (log-rank p = 0.02). Conclusions: There was no significant difference in urinary and rectal morbidity between schedules. Biochemical control of disease in patients with intermediate and high risk of relapse was good.

Hoskin, Peter [Cancer Centre, Mount Vernon Hospital, Northwood, Middlesex (United Kingdom); Rojas, Ana, E-mail: arc03@btconnect.com [Cancer Centre, Mount Vernon Hospital, Northwood, Middlesex (United Kingdom); Lowe, Gerry; Bryant, Linda; Ostler, Peter; Hughes, Rob; Milner, Jessica; Cladd, Helen [Cancer Centre, Mount Vernon Hospital, Northwood, Middlesex (United Kingdom)

2012-03-15T23:59:59.000Z

344

Mesoscopic theory for inhomogeneous mixtures  

E-Print Network [OSTI]

Mesoscopic density functional theory for inhomogeneous mixtures of sperical particles is developed in terms of mesoscopic volume fractions by a systematic coarse-graining procedure starting form microscopic theory. Approximate expressions for the correlation functions and for the grand potential are obtained for weak ordering on mesoscopic length scales. Stability analysis of the disordered phase is performed in mean-field approximation (MF) and beyond. MF shows existence of either a spinodal or a $\\lambda$-surface on the volume-fractions - temperature phase diagram. Separation into homogeneous phases or formation of inhomogeneous distribution of particles occurs on the low-temperature side of the former or the latter surface respectively, depending on both the interaction potentials and the size ratios between particles of different species. Beyond MF the spinodal surface is shifted, and the instability at the $\\lambda$-surface is suppressed by fluctuations. We interpret the $\\lambda$-surface as a borderline between homogeneous and inhomogeneous (containing clusters or other aggregates) structure of the disordered phase. For two-component systems explicit expressions for the MF spinodal and $\\lambda$-surfaces are derived. Examples of interaction potentials of simple form are analyzed in some detail, in order to identify conditions leading to inhomogeneous structures.

A. Ciach

2010-10-22T23:59:59.000Z

345

Variational transition state theory  

SciTech Connect (OSTI)

This research program involves the development of variational transition state theory (VTST) and semiclassical tunneling methods for the calculation of gas-phase reaction rates and selected applications. The applications are selected for their fundamental interest and/or their relevance to combustion.

Truhlar, D.G. [Univ. of Minnesota, Minneapolis (United States)

1993-12-01T23:59:59.000Z

346

Update on Charmonium Theory  

SciTech Connect (OSTI)

In this invited presentation, I review some recent developments in the theory of charmonium that appear likely to be of importance for future experimental studies in this field. The specific areas considered are double charmonium production. LQCD studies of charmonium, recent results for hadron loops, cc{bar} production cross sections at PANDA, charm molecules, and two recent developments, "charmiscelleny".

Barnes, Ted {F E } [ORNL

2010-01-01T23:59:59.000Z

347

Identification in Prediction Theory  

E-Print Network [OSTI]

Identification in Prediction Theory Lars B¨aumer Bielefeld 2000 #12;Acknowledgment I wish to thank remarks. 1 #12;Contents 1 Introduction 3 2 Finite-State Predictability 7 2.1 A Universal Predictor Predictability and Identifiability . . . . . . 30 3.3 Markov Machines for Identification

Bielefeld, University of

348

Benchmarking Nuclear Fission Theory  

E-Print Network [OSTI]

We suggest a small set of fission observables to be used as test cases for validation of theoretical calculations. The purpose is to provide common data to facilitate the comparison of different fission theories and models. The proposed observables are chosen from fission barriers, spontaneous fission lifetimes, fission yield characteristics, and fission isomer excitation energies.

Bertsch, G F; Nazarewicz, W; Talou, P

2015-01-01T23:59:59.000Z

349

Benchmarking Nuclear Fission Theory  

E-Print Network [OSTI]

We suggest a small set of fission observables to be used as test cases for validation of theoretical calculations. The purpose is to provide common data to facilitate the comparison of different fission theories and models. The proposed observables are chosen from fission barriers, spontaneous fission lifetimes, fission yield characteristics, and fission isomer excitation energies.

G. F. Bertsch; W. Loveland; W. Nazarewicz; P. Talou

2015-02-20T23:59:59.000Z

350

Nuclear effective field theory on the lattice  

E-Print Network [OSTI]

In the low-energy region far below the chiral symmetry breaking scale (which is of the order of 1 GeV) chiral perturbation theory provides a model-independent approach for quantitative description of nuclear processes. In the two- and more-nucleon sector perturbation theory is applicable only at the level of an effective potential which serves as input in the corresponding dynamical equation. To deal with the resulting many-body problem we put chiral effective field theory (EFT) on the lattice. Here we present the results of our lattice EFT study up to next-to-next-to-leading order in the chiral expansion. Accurate description of two-nucleon phase-shifts and ground state energy ratio of dilute neutron matter up to corrections of higher orders shows that lattice EFT is a promising tool for a quantitative description of low-energy few- and many-body systems.

Hermann Krebs; Bugra Borasoy; Evgeny Epelbaum; Dean Lee; Ulf-G. Meiß ner

2008-10-01T23:59:59.000Z

351

Modeling the Physical and Biochemical Influence of Ocean Thermal Energy Conversion Plant Discharges into their Adjacent Waters  

SciTech Connect (OSTI)

This paper describes the modeling work by Makai Ocean Engineering, Inc. to simulate the biochemical effects of of the nutrient-enhanced seawater plumes that are discharged by one or several 100 megawatt OTEC plants. The modeling is needed to properly design OTEC plants that can operate sustainably with acceptably low biological impact. In order to quantify the effect of discharge configuration and phytoplankton response, Makai Ocean Engineering implemented a biological and physical model for the waters surrounding O`ahu, Hawai`i, using the EPA-approved Environmental Fluid Dynamics Code (EFDC). Each EFDC grid cell was approximately 1 square kilometer by 20 meters deep, and used a time step of three hours. The biological model was set up to simulate the biochemical response for three classes of organisms: Picoplankton (< 2 um) such as prochlorococccus, nanoplankton (2-20 um), and microplankton (> 20 um) e.g., diatoms. The dynamic biological phytoplankton model was calibrated using chemical and biological data collected for the Hawaii Ocean Time Series (HOTS) project. Peer review of the biological modeling was performed. The physical oceanography model uses boundary conditions from a surrounding Hawai'i Regional Ocean Model, (ROM) operated by the University of Hawai`i and the National Atmospheric and Oceanic Administration. The ROM provided tides, basin scale circulation, mesoscale variability, and atmospheric forcing into the edges of the EFDC computational domain. This model is the most accurate and sophisticated Hawai'ian Regional Ocean Model presently available, assimilating real-time oceanographic observations, as well as model calibration based upon temperature, current and salinity data collected during 2010 near the simulated OTEC site. The ROM program manager peer-reviewed Makai's implementation of the ROM output into our EFDC model. The supporting oceanographic data was collected for a Naval Facilities Engineering Command / Makai project. Results: The model was run for a 100 MW OTEC Plant consisting of four separate ducts, discharging a total combined flow rate of 420 m3/s of warm water and 320 m3/s of cold water in a mixed discharge at 70 meters deep. Each duct was assumed to have a discharge port diameter of 10.5m producing a downward discharge velocity of about 2.18 m/s. The natural system, as measured in the HOTS program, has an average concentration of 10-15 mgC/m3. To calibrate the biological model, we first ran the model with no OTEC plant and varied biological parameters until the simulated data was a good match to the HOTS observations. This modeling showed that phytoplankton concentration were patchy and highly dynamic. The patchiness was a good match with the data variability observed within the HOTS data sets. We then ran the model with simulated OTEC intake and discharge flows and associated nutrients. Directly under the OTEC plant, the near-field plume has an average terminal depth of 172 meters, with a volumetric dilution of 13:1. The average terminal plume temperature was 19.8oC. Nitrate concentrations are 1 to 2 umol/kg above ambient. The advecting plume then further dilutes to less than 1 umol/kg above ambient within a few kilometers downstream, while remaining at depth. Because this terminal near-field plume is well below the 1% light limited depths (~120m), no immediate biological utilization of the nutrients occurs. As the nitrate is advected and dispersed downstream, a fraction of the deep ocean nutrients (< 0.5 umol/kg perturbation) mix upward where they are utilized by the ambient phytoplankton population. This occurs approximately twenty-five kilometers downstream from the plant at 110 - 70 meters depth. For pico-phytoplankton, modeling results indicate that this nutrient perturbation causes a phytoplankton perturbation of approximately 1 mgC/m3 (~10% of average ambient concentrations) that covers an area 10x5 km in size at the 70 to 90m depth. Thus, the perturbations are well within the natural variability of the system, generally corresponding to a 10 to 15% increase above the a

PAT GRANDELLI, P.E.; GREG ROCHELEAU; JOHN HAMRICK, Ph.D.; MATT CHURCH, Ph.D.; BRIAN POWELL, Ph.D.

2012-09-29T23:59:59.000Z

352

A Geometric Hamilton-Jacobi Theory for Classical Field Theories  

E-Print Network [OSTI]

In this paper we extend the geometric formalism of the Hamilton-Jacobi theory for hamiltonian mechanics to the case of classical field theories in the framework of multisymplectic geometry and Ehresmann connections.

M. de Leon; J. C. Marrero; D. Martin de Diego

2008-01-08T23:59:59.000Z

353

Gapless superconductivity and string theory  

E-Print Network [OSTI]

Coexistence of superconducting and normal components in nanowires at currents below the critical (a "mixed" state) would have important consequences for the nature and range of potential applications of these systems. For clean samples, it represents a genuine interaction effect, not seen in the mean-field theory. Here we consider properties of such a state in the gravity dual of a strongly coupled superconductor constructed from D3 and D5 branes. We find numerically uniform gapless solutions containing both components but argue that they are unstable against phase separation, as their free energies are not convex. We speculate on the possible nature of the resulting non-uniform sate ("emulsion") and draw analogies between that state and the familiar mixed state of a type II superconductor in a magnetic field.

Sergei Khlebnikov

2014-11-06T23:59:59.000Z

354

Molecular and biochemical characterization of the jasmonic acid methyltransferase gene from black cottonwood (Populus trichocarpa)  

SciTech Connect (OSTI)

Methyl jasmonate is a metabolite known to be produced by many plants and has roles in diverse biological processes. It is biosynthesized by the action of S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase (JMT), which belongs to the SABATH family of methyltransferases. Herein is reported the isolation and biochemical characterization of a JMT gene from black cottonwood (Populus trichocarpa). The genome of P. trichocarpa contains 28 SABATH genes (PtSABATH1 to PtSABATH28). Recombinant PtSABATH3 expressed in Escherichia coli showed the highest level of activity with jasmonic acid (JA) among carboxylic acids tested. It was therefore renamed PtJMT1. PtJMT1 also displayed activity with benzoic acid (BA), with which the activity was about 22% of that with JA. PtSABATH2 and PtSABATH4 were most similar to PtJMT1 among all PtSABATHs. However, neither of them had activity with JA. The apparent Km values of PtJMT1 using JA and BA as substrate were 175 lM and 341 lM, respectively. Mutation of Ser-153 and Asn-361, two residues in the active site of PtJMT1, to Tyr and Ser respectively, led to higher specific activity with BA than with JA. Homology-based structural modeling indicated that substrate alignment, in which Asn-361 is involved, plays a role in determining the substrate specificity of PtJMT1. In the leaves of young seedlings of black cottonwood, the expression of PtJMT1 was induced by plant defense signal molecules methyl jasmonate and salicylic acid and a fungal elicitor alamethicin, suggesting that PtJMT1 may have a role in plant defense against biotic stresses. Phylogenetic analysis suggests that PtJMT1 shares a common ancestor with the Arabidopsis JMT, and functional divergence of these two apparent JMT orthologs has occurred since the split of poplar and Arabidopsis lineages.

Zhao, Nan [ORNL; Yao, Jianzhuang [University of Tennessee, Knoxville (UTK); Chaiprasongsuk, Minta [University of Tennessee, Knoxville (UTK); Li, Guanglin [University of Tennessee, Knoxville (UTK); Guan, Ju [University of Tennessee, Knoxville (UTK); Tschaplinski, Timothy J [ORNL; Guo, Hong [University of Tennessee, Knoxville (UTK); Chen, Feng [University of Tennessee, Knoxville (UTK)

2013-01-01T23:59:59.000Z

355

Structural and Biochemical Determinants of Ligand Binding by the c-di-GMP Riboswitch  

SciTech Connect (OSTI)

The bacterial second messenger c-di-GMP is used in many species to control essential processes that allow the organism to adapt to its environment. The c-di-GMP riboswitch (GEMM) is an important downstream target in this signaling pathway and alters gene expression in response to changing concentrations of c-di-GMP. The riboswitch selectively recognizes its second messenger ligand primarily through contacts with two critical nucleotides. However, these two nucleotides are not the most highly conserved residues within the riboswitch sequence. Instead, nucleotides that stack with c-di-GMP and that form tertiary RNA contacts are the most invariant. Biochemical and structural evidence reveals that the most common natural variants are able to make alternative pairing interactions with both guanine bases of the ligand. Additionally, a high-resolution (2.3 {angstrom}) crystal structure of the native complex reveals that a single metal coordinates the c-di-GMP backbone. Evidence is also provided that after transcription of the first nucleotide on the 3{prime}-side of the P1 helix, which is predicted to be the molecular switch, the aptamer is functional for ligand binding. Although large energetic effects occur when several residues in the RNA are altered, mutations at the most conserved positions, rather than at positions that base pair with c-di-GMP, have the most detrimental effects on binding. Many mutants retain sufficient c-di-GMP affinity for the RNA to remain biologically relevant, which suggests that this motif is quite resilient to mutation.

Smith, K.; Lipchock, S; Livingston,; Shanahan, C; Strobel, S

2010-01-01T23:59:59.000Z

356

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory · Field recommendations based of activity ­ Corticosterone ­ EEG, ECG and motion studies · Large scale testing ­ Field scale units Science of Foam #12;Disposal: Science and Theory Cessation Time · Multiple bird species can be depopulated

Benson, Eric R.

357

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Opciones para la producción de espuma espuma · Sistemas de boquilla #12;Disposal: Science and Theory Requisitos estimados: · Tiempo: 2 a 3 compactas ­ Equipo de respuesta propio de la industria Espuma de aire comprimido #12;Disposal: Science

Benson, Eric R.

358

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Table of Contents · Why Depopulate? · Depopulation Methods · Basics of Foam · Types of Foam Equipment · Science Behind Foam · Implementing Foam Depopulation · Use of Foam in the Field · Conclusions #12;Disposal: Science and Theory "When HPAI outbreaks

Benson, Eric R.

359

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory 2004 ­ Participación de Bud Malone y la espuma 2009 ­ Ninguna ventaja para el gas Breve historia de la espuma #12;Disposal: Science sistema de boquilla ¿Qué es la espuma? #12;Disposal: Science and Theory · La espuma puede incluir: ­ Una

Benson, Eric R.

360

Electronic Structure: Density Functional Theory S. Kurth, M. A. L. Marques, and E. K. U. Gross  

E-Print Network [OSTI]

Electronic Structure: Density Functional Theory S. Kurth, M. A. L. Marques, and E. K. U. Gross: July 5, 2003) PACS numbers: 71.15.Mb, 31.15.Ew 1 #12;I. INTRODUCTION Density functional theory (DFT systems becomes prohibitive. A different approach is taken in density functional theory where, instead

Gross, E.K.U.

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


361

On the theory of superconductivity   

E-Print Network [OSTI]

The phenomenon of superconductivity has so for defied all attempts of explanation since it was first discovered in 1911. Although two phenomenological theories have been put forward and proved very successful, yet no atomic theories based on quantum...

Cheng, Kai-Chia

362

Beyond heat baths II: Framework for generalized thermodynamic resource theories  

E-Print Network [OSTI]

Cutting-edge experiments, which involve the nano- and quantum scales, have been united with thermodynamics, which describes macroscopic systems, via resource theories. Resource theories have modeled small-scale exchanges of heat and information. Recently, the models were extended to particle exchanges, and a family of thermodynamic resource theories was proposed to model diverse baths, interactions, and free energies. This paper motivates and details the family's structure and prospective applications. How to model electrochemical, gravitational, magnetic, and other thermodynamic systems is explained. Szilard's engine and Landauer's Principle are generalized, as resourcefulness is shown to be convertible not only between informational and gravitational-energy forms, but also among varied physical degrees of freedom in the thermodynamic limit. Quantum operators associated with extensive variables offer opportunities to explore nonclassical noncommutation. This generalization of thermodynamic resource theories invites the modeling of realistic systems that might be harnessed to test small-scale statistical mechanics experimentally.

Nicole Yunger Halpern

2014-09-27T23:59:59.000Z

363

Time machines and quantum theory  

E-Print Network [OSTI]

There is a deep structural link between acausal spacetimes and quantum theory. As a consequence quantum theory may resolve some "paradoxes" of time travel. Conversely, non-time-orientable spacetimes naturally give rise to electric charges and spin half. If an explanation of quantum theory is possible, then general relativity with time travel could be it.

Mark J Hadley

2006-12-02T23:59:59.000Z

364

Density Functional Theory for Superconductors  

E-Print Network [OSTI]

Density Functional Theory for Superconductors N. N. LATHIOTAKIS,1,2 M. A. L. MARQUES,1,2,3 M. LU; density functional theory; critical temperature; exchange and correlation; phonon and theoretical chemistry is density functional theory (DFT). Its foundations were established in the mid-1960s

Gross, E.K.U.

365

Materials Theory, Modeling and Simulation | ORNL  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

Materials Characterization Materials Theory and Simulation Quantum Monte Carlo Density Functional Theory Monte Carlo Ab Initio Molecular Dynamics Chemical and Materials Theory...

366

Density Functional Theory (DFT) Simulated Annealing (SA)  

E-Print Network [OSTI]

. . . . . . . . 9 2009 #12;! " # $ % & - " # $ %' ! " # # $ % & # ( # " ) Density Functional Theory) % Lattice-Boltzmann (LBM) #12;! " # $ % & - " # $ %' ! " # # $ % & # ( # " ) Density Functional Theory (DFT;! " # $ % & - " # $ %' ! " # # $ % & # ( # " ) Density Functional Theory (DFT) Simulated Annealing (SA) Monte Carlo &$ ' ' (GCMC

367

Applying Effective Theories to Collider Phenomenology  

E-Print Network [OSTI]

Theories to Collider Phenomenology by Grigol GagikovichTheories to Collider Phenomenology Copyright 2010 by GrigolTheories to Collider Phenomenology by Grigol Gagikovich

Ovanesyan, Grigol

2010-01-01T23:59:59.000Z

368

On strategy of relativistic quantum theory construction  

E-Print Network [OSTI]

Two different strategies of the relativistic quantum theory construction are considered and evaluated. The first strategy is the conventional strategy, based on application of the quantum mechanics technique to relativistic systems. This approach cannot solve the problem of pair production. The apparent success of QFT at solution of this problem is conditioned by the inconsistency of QFT, when the commutation relations are incompatible with the dynamic equations. (The inconsistent theory "can solve" practically any problem, including the problem of pair production). The second strategy is based on application of fundamental principles of classical dynamics and those of statistical description to relativistic dynamic systems. It seems to be more reliable, because this strategy does not use quantum principles, and the main problem of QFT (join of nonrelativistic quantum principles with the principles of relativity) appears to be eliminated.

Yuri A. Rylov

2006-01-16T23:59:59.000Z

369

Resource Limited Theories and their Extensions  

E-Print Network [OSTI]

This work is based on the idea that extension of physical and mathematical theories to include the amount of space, time, momentum, and energy resources required to determine properties of systems may influence what is true in physics and mathematics at a foundational level. Background material, on the dependence of region or system sizes on both the resources required to study the regions or systems and the indirectness of the reality status of the systems, suggests that one associate to each amount, r, of resources a domain, D_{r}, a theory, T_{r}, and a language, L_{r}. D_{r} is limited in that all statements in D_{r} require at most r resources to verify or refute. T_{r} is limited in that any theorem of T_{r} must be provable using at most r resources. Also any theorem of T_{r} must be true in D_{r}. L_{r} is limited in that all expressions in L_{r} require at most r resources to create, display, and maintain. A partial ordering of the resources is used to describe minimal use of resources, a partial ordering of the T_{r}, and motion of an observer using resources to acquire knowledge. Reflection principles are used to push the effect of Godel's incompleteness theorem on consistency up in the partial ordering. It is suggested that a coherent theory of physics and mathematics, or theory of everything, is a common extension of all the T_{r}.

Paul Benioff

2003-04-24T23:59:59.000Z

370

An Underlying Theory for Gravity  

E-Print Network [OSTI]

A new direction to understand gravity has recently been explored by considering classical gravity to be a derived interaction from an underlying theory. This underlying theory would involve new degrees of freedom at a deeper level and it would be structurally different from classical gravitation. It may conceivably be a quantum theory or a non-quantum theory. The relation between this underlying theory and Einstein's gravity is similar to the connection between statistical mechanics and thermodynamics. We discuss the apparent lack of evidence of any quantum nature of gravity in this context.

Yuan K. Ha

2012-08-14T23:59:59.000Z

371

Modern theories of discrete time  

E-Print Network [OSTI]

We review some modern theories about the structure of space and time, in particular those related to discrete space and time. Following an epistemological method we start from theories which discuss discrete space and time as a mathematical tool to solve physical models. Antother theories look for physical content of the discrete structure of space and time, based in relational theories of space and time which are derived from the relations of some fundamental entities. Finally we present some philosophical positions who try to find the ontological foundation of the relational theories os space and time.

M. Lorente

2003-12-31T23:59:59.000Z

372

Optimiziing the laboratory monitoring of biological wastewater-purification systems  

SciTech Connect (OSTI)

Optimization of the laboratory monitoring of biochemical wastewater-treatment systems at coke plants is considered, for the example of OAO Koks. By adopting a methodological approach to determine the necessary data from chemical analysis, it is possible to reduce the time, labor, and materials required for monitoring, without impairing the purification process or compromising the plant's environmental policies.

S.V. Gerasimov [OAO Koks, Kemerovo (Russian Federation)

2009-05-15T23:59:59.000Z

373

Temperature Modeling in Activated Sludge Systems: A Case Study  

E-Print Network [OSTI]

Temperature Modeling in Activated Sludge Systems: A Case Study Jacek Makinia, Scott A. Wells, Piotr Zima ABSTRACT: A model of temperature dynamics was developed as part of a general model of activated-sludge biochemical-energy inputs and other activated-sludge, heat-balance terms. All the models were tested under

Wells, Scott A.

374

Theory of Pseudomodes in Quantum Optical Processes  

E-Print Network [OSTI]

This paper deals with non-Markovian behaviour in atomic systems coupled to a structured reservoir of quantum EM field modes, with particular relevance to atoms interacting with the field in high Q cavities or photonic band gap materials. In cases such as the former, we show that the pseudo mode theory for single quantum reservoir excitations can be obtained by applying the Fano diagonalisation method to a system in which the atomic transitions are coupled to a discrete set of (cavity) quasimodes, which in turn are coupled to a continuum set of (external) quasimodes with slowly varying coupling constants and continuum mode density. Each pseudomode can be identified with a discrete quasimode, which gives structure to the actual reservoir of true modes via the expressions for the equivalent atom-true mode coupling constants. The quasimode theory enables cases of multiple excitation of the reservoir to now be treated via Markovian master equations for the atom-discrete quasimode system. Applications of the theory to one, two and many discrete quasimodes are made. For a simple photonic band gap model, where the reservoir structure is associated with the true mode density rather than the coupling constants, the single quantum excitation case appears to be equivalent to a case with two discrete quasimodes.

B. J. Dalton; S. M. Barnett; B. M. Garraway

2001-02-28T23:59:59.000Z

375

DUSEL Theory White Paper  

E-Print Network [OSTI]

The NSF has chosen the site for the Deep Underground Science and Engineering Laboratory (DUSEL) to be in Lead, South Dakota. In fact, the state of South Dakota has already stepped up to the plate and contributed its own funding for the proposed lab, see http://www.sanfordlaboratoryathomestake.org/index.html. The final decision by NSF for funding the Initial Suite of Experiments for DUSEL will be made early in 2009. At that time the NSF Science Board must make a decision. Of order 200 experimentalists have already expressed an interest in performing experiments at DUSEL. In order to assess the interest of the theoretical community, the Center for Cosmology and Astro-Particle Physics (CCAPP) at The Ohio State University (OSU) organized a 3-day DUSEL Theory Workshop in Columbus, Ohio from April 4 - 6, 2008. The workshop focused on the scientific case for six proposed experiments for DUSEL: long baseline neutrino oscillations, proton decay, dark matter, astrophysical neutrinos, neutrinoless double beta decay and N-Nbar oscillations. The outcome of this workshop is the DUSEL Theory White paper addressing the scientific case at a level which may be useful in the decision making process for policy makers at the NSF and in the U.S. Congress. In order to assess the physics interest in the DUSEL project we have posted the DUSEL Theory White paper on the following CCAPP link http://ccapp.osu.edu/whitepaper.html . Please read the white paper and, if you are interested, use the link to show your support by co-signing the white paper.

S. Raby; T. Walker; K. S. Babu; H. Baer; A. B. Balantekin; V. Barger; Z. Berezhiani; A. de Gouvea; R. Dermisek; A. Dolgov; P. Fileviez Perez; G. Gabadadze; A. Gal; P. Gondolo; W. Haxton; Y. Kamyshkov; B. Kayser; E. Kearns; B. Kopeliovich; K. Lande; D. Marfatia; R. N. Mohapatra; P. Nath; Y. Nomura; K. A. Olive; J. Pati; S. Profumo; R. Shrock; Z. Tavartkiladze; K. Whisnant; L. Wolfenstein

2008-10-24T23:59:59.000Z

376

Quantum Theory of Economics  

E-Print Network [OSTI]

In the given work the first attempt to generalize quantum uncertainty relation on macro objects is made. Business company as one of economical process participants was chosen by the authors for this purpose. The analogies between quantum micro objects and the structures which from the first sight do not have anything in common with physics are given. The proof of generalized uncertainty relation is produced. With the help of generalized uncertainty relation the authors wanted to elaborate a new non-traditional approach to the description of companies' business activity and their developing and try to formulate some advice for them. Thus, our work makes the base of quantum theory of econimics

Vladimir I. Zverev; Alexander M. Tishin

2009-01-29T23:59:59.000Z

377

Neutrinos: Theory and Phenomenology  

SciTech Connect (OSTI)

The theory and phenomenology of neutrinos will be addressed, especially that relating to the observation of neutrino flavor transformations. The current status and implications for future experiments will be discussed with special emphasis on the experiments that will determine the neutrino mass ordering, the dominant flavor content of the neutrino mass eigenstate with the smallest electron neutrino content and the size of CP violation in the neutrino sector. Beyond the neutrino Standard Model, the evidence for and a possible definitive experiment to confirm or refute the existence of light sterile neutrinos will be briefly discussed.

Parke, Stephen

2013-10-22T23:59:59.000Z

378

Confirming inextensional theory  

E-Print Network [OSTI]

Mansfield exploits the analogy with Tension Field by devising wrinkled specimens of the same geometrical p tions and equivalent boundary conditions, where the highly visible outline of crests and troughs normal to wrinkles gives equivalent information... . On the extension and flexure of cylindrical and spherical thin elastic shells. Philos. Trans. R. Soc. London A 181, 433–480. Ben Amar, M., Pomeau, Y., 1997. Crumpled paper. Proc. R. Soc. London Ser. A 453, 729–755. Calladine, C.R., 1983. Theory of Shell Structures...

Seereeram, V. R.; Seffen, K. A.

2014-06-24T23:59:59.000Z

379

Theory and Software  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

AFDC Printable Version Share this resource Send a link to EERE: Alternative Fuels Data Center Home Page to someone by E-mail Share EERE: Alternative Fuels Data Center Home Page on Facebook Tweet about EERE: Alternative Fuels Data Center Home Page on Twitter Bookmark EERE:1 First Use of Energy for All Purposes (Fuel and Nonfuel),Feet) Year Jan Feb Mar Apr MayAtmosphericNuclear SecurityTensile Strain Switched Ferromagnetism in Layered NbS2 andThe1 Members Theme 1LaboratoryTheory and

380

Statistical Learning Theory of Protein Dynamics  

E-Print Network [OSTI]

integrated statistical learning and simulation approach tomolecular simulation, using statistical learning theory tomolecular simulation and statistical learning theory of

Haas, Kevin

2013-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


381

Unified Theory of Ideals  

E-Print Network [OSTI]

Unified field theories try to merge the internal symmetries of the standard model into a single group. Here we lay out something different. We give evidence that a theory may be unified in alternate ways; that is, instead of aiming to unify the internal symmetries into a single group, the groups may be unified together with the quarks and leptons that they act on. Furthermore, the (3+1) Lorentz transformations may likewise be unified with the scalars, spinors, four-vectors and field strength tensors that they act on. These simplifications occur because the representations can be found in the form of an algebra acting on itself. The approach described in this paper is meant to tie everything into the Dixon algebra: RxCxHxO, the tensor product of the four normed division algebras over R, whose connection to the standard model was earlier advocated for in [1]. As we show, this method very quickly uncovers all of the Lorentz representations of the standard model, and a set of states behaving like one full generation of quarks and leptons.

Cohl Furey

2014-04-16T23:59:59.000Z

382

The Hamilton-Jacobi Theory, Quantum Mechanics and General Relativity  

E-Print Network [OSTI]

The Hamilton-Jacobi theory of Classical Mechanics can be extended in a novel manner to systems which are fuzzy in the sense that they can be represented by wave functions. A constructive interference of the phases of the wave functions then gives us back Classical systems. In a suitable description this includes both Quantum Theory and General Relativity in the well known superspace formulation. However, there are several nuances which provide insight into these latter systems. All this is considered in this paper together with suitable generalization, to cascades of super universes.

B. G. Sidharth

2005-10-12T23:59:59.000Z

383

Non-Equilibrium Conformal Field Theories with Impurities  

E-Print Network [OSTI]

We present a construction of non-equilibrium steady states within conformal field theory. These states sustain energy flows between two quantum systems, initially prepared at different temperatures, whose dynamical properties are represented by two, possibly different, conformal field theories connected through an impurity. This construction relies on a real time formulation of conformal defect dynamics based on a field scattering picture parallelizing - but yet different from - the Euclidean formulation. We present the basic characteristics of this formulation and give an algebraic construction of the real time scattering maps that we illustrate in the case of SU(2)-based conformal field theories.

D. Bernard; B. Doyon; J. Viti

2015-01-20T23:59:59.000Z

384

Teaching lean construction: perspectives on theory and practice  

E-Print Network [OSTI]

required them to visit the glossary on the LCI website to identify all concepts addressed by the Airplane Game. In addition, within the first two weeks, he also introduced the Toyota Production System and Toyota Way principles (Liker 2003... of course readings introduced lean theory (the Toyota Way and value stream mapping) (Liker 2003), the transformation-flow-value (TFV) theory of production (Koskela 2000), and lean project delivery (definition, design, construction, and IPD). The second...

Tsao, Cynthia C. Y.; Azambuja, Marcelo; Hamzeh, Farook R.; Rybkowski, Zofia K.

2013-07-31T23:59:59.000Z

385

DUSEL Theory White Paper  

SciTech Connect (OSTI)

The scientific case for a Deep Underground Science and Engineering Laboratory [DUSEL] located at the Homestake mine in Lead, South Dakota is exceptional. The site of this future laboratory already claims a discovery for the detection of solar neutrinos, leading to a Nobel Prize for Ray Davis. Moreover this work provided the first step to our present understanding of solar neutrino oscillations and a chink in the armor of the Standard Model of particle physics. We now know, from several experiments located in deep underground experimental laboratories around the world, that neutrinos have mass and even more importantly this mass appears to fit into the framework of theories which unify all the known forces of nature, i.e. the strong, weak, electromagnetic and gravitational. Similarly, DUSEL can forge forward in the discovery of new realms of nature, housing six fundamental experiments that will test the frontiers of our knowledge: (1) Searching for nucleon decay (the decay of protons and neutrons predicted by grand unified theories of nature); (2) Searching for neutrino oscillations and CP violation by detecting neutrinos produced at a neutrino source (possibly located at Brookhaven National Laboratory and/or Fermi National Laboratory); (3) Searching for astrophysical neutrinos originating from the sun, from cosmic rays hitting the upper atmosphere or from other astrophysical sources, such a supernovae; (4) Searching for dark matter particles (the type of matter which does not interact electromagnetically, yet provides 24% of the mass of the Universe); (5) Looking for the rare process known as neutrino-less double beta decay which is predicted by most theories of neutrino mass and allows two neutrons in a nucleus to spontaneously change into two protons and two electrons; and (6) Searching for the rare process of neutron- anti-neutron oscillations, which would establish violation of baryon number symmetry. A large megaton water Cherenkov detector for neutrinos and nucleon decay, located in DUSEL and roughly 20 times the size of current detectors, can perform the first three of these experiments. The last 3 can utilize the unique environment afforded by DUSEL to perform the most sensitive tests to date. Any one of these experiments can greatly increase our knowledge of nature. The Deep Underground Science and Engineering Laboratory (DUSEL), with a Large Megaton Size Detector, is desperately needed to address a set of fundamental issues in particle and astrophysics.

Raby, S.; /Ohio State U.; Walker, T.; /Ohio State U. /Ohio State U., Dept. Astron. /Ohio State U., CCAPP; Babu, K.S.; /Oklahoma State U.; Baer, H.; /Florida State U.; Balantekin, A.B.; Barger, V.; /Wisconsin U., Madison; Berezhiani, Z.; /Gran Sasso; de Gouvea, A.; /Northwestern U.; Dermisek, R.; /Princeton U.; Dolgov, A.; /Moscow, ITEP /Ferrara U.; Fileviez Perez, P.; /Wisconsin U., Madison; Gabadadze, G.; /New York U.; Gal, A.; /Hebrew U.; Gondolo, P.; /Utah U.; Haxton, W.; /Washington U., Seattle; Kamyshkov, Y.; /Tennessee U.; Kayser, B.; /Fermilab; Kearns, E.; /Boston U.; Kopeliovich, B.; /Santa Maria U., Valparaiso; Lande, K.; /Pennsylvania U.; Marfatia, D.; /Kansas U. /Maryland U. /Northeastern U. /UC, Berkeley /LBL, Berkeley /Minnesota U. /SLAC /UC, Santa Cruz /SUNY, Stony Brook /Oklahoma State U. /Iowa State U. /Carnegie Mellon U.

2011-11-14T23:59:59.000Z

386

Twistor String Theory and QCD  

SciTech Connect (OSTI)

The author reviews recent progress in using twistor-inspired methods to compute perturbative scattering amplitudes in gauge theory, for application to collider physics.

Dixon, Lance J.; /SLAC

2005-12-08T23:59:59.000Z

387

A mathematical theory of resources  

E-Print Network [OSTI]

In many different fields of science, it is useful to characterize physical states and processes as resources. Chemistry, thermodynamics, Shannon's theory of communication channels, and the theory of quantum entanglement are prominent examples. Questions addressed by a theory of resources include: Which resources can be converted into which other ones? What is the rate at which arbitrarily many copies of one resource can be converted into arbitrarily many copies of another? Can a catalyst help in making an impossible transformation possible? How does one quantify the resource? Here, we propose a general mathematical definition of what constitutes a resource theory. We prove some general theorems about how resource theories can be constructed from theories of processes wherein there is a special class of processes that are implementable at no cost and which define the means by which the costly states and processes can be interconverted one to another. We outline how various existing resource theories fit into our framework. Our abstract characterization of resource theories is a first step in a larger project of identifying universal features and principles of resource theories. In this vein, we identify a few general results concerning resource convertibility.

Bob Coecke; Tobias Fritz; Robert W. Spekkens

2014-11-28T23:59:59.000Z

388

New Interactions in Effective Theory.  

E-Print Network [OSTI]

??I studied the physics beyond the Standard Model by using effective field theory. I built models of new heavy physics and obtained their low energy… (more)

Kim, Kyungwook

2010-01-01T23:59:59.000Z

389

Nonstationary statistical theory for multipactor  

SciTech Connect (OSTI)

This work presents a new and general approach to the real dynamics of the multipactor process: the nonstationary statistical multipactor theory. The nonstationary theory removes the stationarity assumption of the classical theory and, as a consequence, it is able to adequately model electron exponential growth as well as absorption processes, above and below the multipactor breakdown level. In addition, it considers both double-surface and single-surface interactions constituting a full framework for nonresonant polyphase multipactor analysis. This work formulates the new theory and validates it with numerical and experimental results with excellent agreement.

Anza, S.; Vicente, C.; Gil, J. [Aurora Software and Testing S.L., Edificio de Desarrollo Empresarial 9B, Universidad Politecnica de Valencia, Camino de Vera s/n, 46022 Valencia (Spain); Boria, V. E. [Departamento de Comunicaciones-iTEAM, Universidad Politecnica de Valencia, Camino de Vera s/n, 46022 Valencia (Spain); Gimeno, B. [Departamento de Fisica Aplicada y Electromagnetismo-ICMUV, Universitat de Valencia, c/Dr. Moliner, 50, 46100 Valencia (Spain); Raboso, D. [Payloads Systems Division, European Space Agency, 2200-AG Noordwijk (Netherlands)

2010-06-15T23:59:59.000Z

390

ALS Evidence Confirms Combustion Theory  

Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

ALS Evidence Confirms Combustion Theory Print Researchers recently uncovered the first step in the process that transforms gas-phase molecules into solid particles like soot and...

391

Variable Mass Theories of Gravity  

E-Print Network [OSTI]

Several attempts to construct theories of gravity with variable mass are considered. The theoretical impacts of allowing the rest mass to vary with respect to time or an appropriate curve parameter are examined in the framework of Newtonian and Einsteinian gravity theories. In further steps, scalar-tensor theories are examined with respect to their relation to the variation of the mass and in an ultimate step, an additional coordinate is introduced and its possible relation to the mass is examined, yielding a five dimensional space-time-matter theory.

M. Leclerc

2002-12-03T23:59:59.000Z

392

Towards an Integration of the Lean Enterprise System, Total Quality Management, Six Sigma and Related Enterprise Process Improvement Methods  

E-Print Network [OSTI]

The lean enterprise system, total quality management, six sigma, theory of constraints, agile manufacturing,

Bozdogan, Kirkor

2010-08-05T23:59:59.000Z

393

Architecting the System of Systems Enterprise: Enabling Constructs and Methods from the Field of Engineering Systems  

E-Print Network [OSTI]

Engineering systems is a field of scholarship focused on developing fundamental theories and methods to address the challenges of large-scale complex systems in context of their socio-technical environments. The authors ...

Rhodes, Donna H.

394

Disposal: Science and Theory Disposal: Science and Theory  

E-Print Network [OSTI]

Disposal: Science and Theory #12;Disposal: Science and Theory Table of Contents · Disposal options emergency mortality composting procedure · Use of composting during outbreaks #12;Disposal: Science and disinfection of farms and surveillance around affected flocks. " USDA APHIS VS EMD, 2007 #12;Disposal: Science

Benson, Eric R.

395

Gauge Theories of Josephson Junction Arrays  

E-Print Network [OSTI]

We show that the zero-temperature physics of planar Josephson junction arrays in the self-dual approximation is governed by an Abelian gauge theory with periodic mixed Chern-Simons term describing the charge-vortex coupling. The periodicity requires the existence of (Euclidean) topological excitations which determine the quantum phase structure of the model. The electric-magnetic duality leads to a quantum phase transition between a superconductor and a superinsulator at the self-dual point. We also discuss in this framework the recently proposed quantum Hall phases for charges and vortices in presence of external offset charges and magnetic fluxes: we show how the periodicity of the charge-vortex coupling can lead to transitions to anyon superconductivity phases. We finally generalize our results to three dimensions, where the relevant gauge theory is the so-called BF system, with an antisymmetric Kalb-Ramond gauge field.

M. C. Diamantini; P. Sodano; C. A. Trugenberger

1995-11-23T23:59:59.000Z

396

No Drama Quantum Theory? A Review  

E-Print Network [OSTI]

Schr\\"{o}dinger (Nature, v.169, 538 (1952)) noted that the complex matter field in the Klein-Gordon equation can be made real by a gauge transform, although charged fields are believed to require complex functions. Surprisingly, the result can be extended to the Dirac equation: three complex components of the Dirac spinor function can be algebraically eliminated, and the remaining component can be made real by a gauge transform. Therefore, the Dirac equation is generally equivalent to one fourth-order partial differential equation for one real function (A. Akhmeteli, J. Math. Phys. v.52, 082303 (2011)). These results both belong in textbooks and can be used for development of new efficient methods of quantum chemistry. The matter field can be algebraically eliminated both in scalar electrodynamics and in spinor electrodynamics in a certain gauge. The resulting equations describe independent dynamics of the electromagnetic field, which permits mathematical simplification and can be useful for interpretation of quantum theory. For example, in the Bohm interpretation, the electromagnetic field can replace the wave function as the guiding field. It is also shown that for these equations, generalized Carleman embedding generates systems of linear equations in the Hilbert space, which look like second-quantized theories and are equivalent to the original nonlinear systems on the set of solutions of the latter. Thus, the relevant local realistic models can be embedded into quantum field theories. These models are equivalent to scalar electrodynamics and spinor electrodynamics, so they correctly describe a large body of experimental data. Although they may need some modifications for better agreement with experiments, they may be of great interest as "no drama quantum theories", as simple (in principle) as classical electrodynamics. Possible issues with the Bell theorem are discussed.

A. Akhmeteli

2011-11-20T23:59:59.000Z

397

Structural and biochemical studies of sigma54 transcriptional activation in Aquifex aeolicus  

E-Print Network [OSTI]

Hoover, T.R. (2004) Helicobacter pylori FlgR is an enhancer-flagellar system of Helicobacter pylori. Mol. Microbiol. 52,Characterization of Helicobacter pylori ?54 promoter-binding

Vidangos, Natasha Keith

2010-01-01T23:59:59.000Z

398

Bogoliubov theory and bosonic atoms  

E-Print Network [OSTI]

We formulate the Bogoliubov variational principle in a mathematical framework similar to the generalized Hartree-Fock theory. Then we analyze the Bogoliubov theory for bosonic atoms in details. We discuss heuristically why the Bogoliubov energy should give the first correction to the leading energy of large bosonic atoms.

Phan Thanh Nam

2011-09-13T23:59:59.000Z

399

Effective Theories of Coupled Classical and Quantum Variables  

E-Print Network [OSTI]

We address the issue of coupling variables which are essentially classical to variables that are quantum. Two approaches are discussed. In the first (based on collaborative work with L.Di\\'osi), continuous quantum measurement theory is used to construct a phenomenological description of the interaction of a quasiclassical variable $X$ with a quantum variable $x$, where the quasiclassical nature of $X$ is assumed to have come about as a result of decoherence. The state of the quantum subsystem evolves according to the stochastic non-linear Schr\\"odinger equation of a continuously measured system, and the classical system couples to a stochastic c-number $\\x (t)$ representing the imprecisely measured value of $x$. The theory gives intuitively sensible results even when the quantum system starts out in a superposition of well-separated localized states. The second approach involves a derivation of an effective theory from the underlying quantum theory of the combined quasiclassical--quantum system, and uses the decoherent histories approach to quantum theory.

J. J. Halliwell

1998-08-26T23:59:59.000Z

400

The Quantum Theory of Fluids  

E-Print Network [OSTI]

The quantum theory of fields is largely based on studying perturbations around non-interacting, or free, field theories, which correspond to a collection of quantum-mechanical harmonic oscillators. The quantum theory of an ordinary fluid is `freer', in the sense that the non-interacting theory also contains an infinite collection of quantum-mechanical free particles, corresponding to vortex modes. By computing a variety of correlation functions at tree- and loop-level, we give evidence that a quantum perfect fluid can be consistently formulated as a low-energy, effective field theory. We speculate that the quantum behaviour is radically different to both classical fluids and quantum fields, with interesting physical consequences for fluids in the low temperature regime.

Ben Gripaios; Dave Sutherland

2014-06-24T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


401

Probability: Theory and examples  

E-Print Network [OSTI]

Some times the lights are shining on me. Other times I can barely see. Lately it occurs to me what a long strange trip its been. Grateful Dead In 1989 when the first edition of the book was completed, my sons David and Greg were 3 and 1, and the cover picture showed the Dow Jones at 2650. The last twenty years have brought many changes but the song remains the same. The title of the book indicates that as we develop the theory, we will focus our attention on examples. Hoping that the book would be a useful reference for people who apply probability in their work, we have tried to emphasize the results that are important for applications, and illustrated their use with roughly 200 examples. Probability is not a spectator sport, so the book contains almost 450 exercises to challenge the reader and to deepen their understanding. The fourth edition has two major changes (in addition to a new publisher): (i) The book has been converted from TeX to LaTeX. The systematic use of labels should eventually eliminate problems with references to other points in the text. In

Rick Durrett

2011-01-01T23:59:59.000Z

402

Effective field theory for dilute fermions with pairing  

SciTech Connect (OSTI)

Effective field theory (EFT) methods for a uniform system of fermions with short-range, natural interactions are extended to include pairing correlations, as part of a program to develop a systematic Kohn-Sham density functional theory (DFT) for medium and heavy nuclei. An effective action formalism for local composite operators leads to a free-energy functional that includes pairing by applying an inversion method order by order in the EFT expansion. A consistent renormalization scheme is demonstrated for the uniform system through next-to-leading order, which includes induced-interaction corrections to pairing.

Furnstahl, R.J. [Department of Physics, Ohio State University, Columbus, OH 43210 (United States)], E-mail: furnstahl.1@osu.edu; Hammer, H.-W. [Helmholtz-Institut fuer Strahlen- und Kernphysik (Theorie), Universitaet Bonn, Nussallee 14-16, D-53115 Bonn (Germany)], E-mail: hammer@itkp.uni-bonn.de; Puglia, S.J. [SBIG PLC, Berkeley Square House, London W1J 6BR (United Kingdom)], E-mail: spuglia@sbiguk.com

2007-11-15T23:59:59.000Z

403

Introduction to Q-tensor theory  

E-Print Network [OSTI]

This paper aims to provide an introduction to a basic form of the ${\\bf Q}$-tensor approach to modelling liquid crystals, which has seen increased interest in recent years. The increase in interest in this type of modelling approach has been driven by investigations into the fundamental nature of defects and new applications of liquid crystals such as bistable displays and colloidal systems for which a description of defects and disorder is essential. The work in this paper is not new research, rather it is an introductory guide for anyone wishing to model a system using such a theory. A more complete mathematical description of this theory, including a description of flow effects, can be found in numerous sources but the books by Virga and Sonnet and Virga are recommended. More information can be obtained from the plethora of papers using such approaches, although a general introduction for the novice is lacking. The first few sections of this paper will detail the development of the ${\\bf Q}$-tensor approach for nematic liquid crystalline systems and construct the free energy and governing equations for the mesoscopic dependent variables. A number of device surface treatments are considered and theoretical boundary conditions are specified for each instance. Finally, an example of a real device is demonstrated.

Nigel J. Mottram; Christopher J. P. Newton

2014-09-12T23:59:59.000Z

404

in: "Density Functional Theory", edited by R.F. Nalewajski, Topics in Current Chemistry, Vol. 181, p. 81  

E-Print Network [OSTI]

in: "Density Functional Theory", edited by R.F. Nalewajski, Topics in Current Chemistry, Vol. 181, p. 81 Springer­Verlag Berlin Heidelberg 1996 Density functional theory of time­dependent phenomena E of density functional theory (DFT) is to describe an interacting many­particle system exclusively

Gross, E.K.U.

405

in: "Density Functional Theory", edited by R.F. Nalewajski, Topics in Current Chemistry, Vol. 181, p. 81  

E-Print Network [OSTI]

in: "Density Functional Theory", edited by R.F. Nalewajski, Topics in Current Chemistry, Vol. 181, p. 81 Springer-Verlag Berlin Heidelberg 1996 Density functional theory of time-dependent phenomena E of density functional theory (DFT) is to describe an interacting many-particle system exclusively

Gross, E.K.U.

406

Electronic Structure: Density Functional Theory S. Kurth, M.A.L. Marques, and E. K. U. Gross  

E-Print Network [OSTI]

Electronic Structure: Density Functional Theory S. Kurth, M.A.L. Marques, and E. K. U. Gross: July 5, 2003) PACS numbers: 71.15.Mb, 31.15.Ew 1 #12; I. INTRODUCTION Density functional theory (DFT systems becomes prohibitive. A di#erent approach is taken in density functional theory where, instead

Gross, E.K.U.

407

Exact theory of intermediate phases in two dimensions  

SciTech Connect (OSTI)

We show how field theory yields the exact description of intermediate phases in the scaling limit of two-dimensional statistical systems at a first order phase transition point. The ability of a third phase to form an intermediate wetting layer or only isolated bubbles is explicitly related to the spectrum of excitations of the field theory. The order parameter profiles are determined and interface properties such as passage probabilities and internal structure are deduced from them. The theory is illustrated through the application to the q-state Potts model and the Ashkin–Teller model. The latter is shown to provide the first exact solution of a bulk wetting transition. -- Highlights: •Phase separation with appearance of a third phase is studied exactly. •Interfacial properties are derived from field theory. •Exact solution of bulk wetting transition is provided.

Delfino, Gesualdo, E-mail: delfino@sissa.it; Squarcini, Alessio, E-mail: alessio.squarcini@sissa.it

2014-03-15T23:59:59.000Z

408

Particle vibrational coupling in covariant density functional theory  

E-Print Network [OSTI]

A consistent combination of covariant density functional theory (CDFT) and Landau-Migdal Theory of Finite Fermi Systems (TFFS) is presented. Both methods are in principle exact, but Landau-Migdal theory cannot describe ground state properties and density functional theory does not take into account the energy dependence of the self-energy and therefore fails to yield proper single-% particle spectra as well as the coupling to complex configurations in the width of giant resonances. Starting from an energy functional, phonons and their vertices are calculated without any further parameters. They form the basis of particle-vibrational coupling leading to an energy dependence of the self-energy and an induced energy-dependent interaction in the response equation. A subtraction procedure avoids double counting. Applications in doubly magic nuclei and in a chain of superfluid nuclei show excellent agreement with experimental data.

P. Ring; E. Litvinova

2010-06-21T23:59:59.000Z

409

Effective constrained polymeric theories and their continuum limit  

E-Print Network [OSTI]

The classical limit of polymer quantum theories yields a one parameter family of `effective' theories labeled by \\lambda. Here we consider such families for constrained theories and pose the problem of taking the `continuum limit', \\lambda -> 0. We put forward criteria for such question to be well posed, and propose a concrete strategy based in the definition of appropriately constructed Dirac observables. We analyze two models in detail, namely a constrained oscillator and a cosmological model arising from loop quantum cosmology. For both these models we show that the program can indeed be completed, provided one makes a particular choice of \\lambda-dependent internal time with respect to which the dynamics is described and compared. We show that the limiting theories exist and discuss the corresponding limit. These results might shed some light in the problem of defining a renormalization group approach, and its associated continuum limit, for quantum constrained systems.

Alejandro Corichi; Tatjana Vukasinac

2012-08-02T23:59:59.000Z

410

Structure in 6D and 4D N = 1 supergravity theories from F-theory  

E-Print Network [OSTI]

We explore some aspects of 4D supergravity theories and F-theory vacua that are parallel to structures in the space of 6D theories. The spectrum and topological terms in 4D supergravity theories correspond to topological ...

Grimm, Thomas W.

411

DEPARTMENT OF BIOCHEMICAL ENGINEERING AND BIOTECHNOLOGY INDIAN INSTITUTE OF TECHNOLOGY DELHI  

E-Print Network [OSTI]

collection with sampling vials should be provided. 17. SS condenser for exhaust gas outlet (SS-316L) should be supplied with one pH probe. The pH control range should be from 3 - 12, links to acid pump or CO2 gas. Automatic and manual gas mixing options with control via solenoid valves should be available. 13. The system

Kumar, M. Jagadesh

412

Computer-Aided Process Engineering Center Department of Chemical and Biochemical Engineering  

E-Print Network [OSTI]

in offshore oil & gas industries (Gürkan Sin) Data mining techniques for process monitoring & operation Liquids (Jens Abildskov) Gas Solubility in Complex Liquids (Jens Abildskov) Biocatalysis (Jens Abildskov) Diabatic Distillation (Jens Abildskov/Jakob Kjøbsted Huusom) Modelling and control of a 4-tank system

Mosegaard, Klaus

413

Compact boson stars in K field theories  

E-Print Network [OSTI]

We study a scalar field theory with a non-standard kinetic term minimally coupled to gravity. We establish the existence of compact boson stars, that is, static solutions with compact support of the full system with self-gravitation taken into account. Concretely, there exist two types of solutions, namely compact balls on the one hand, and compact shells on the other hand. The compact balls have a naked singularity at the center. The inner boundary of the compact shells is singular, as well, but it is, at the same time, a Killing horizon. These singular, compact shells therefore resemble black holes.

C. Adam; N. Grandi; P. Klimas; J. Sanchez-Guillen; A. Wereszczynski

2009-09-16T23:59:59.000Z

414

Compact boson stars in K field theories  

E-Print Network [OSTI]

We study a scalar field theory with a non-standard kinetic term minimally coupled to gravity. We establish the existence of compact boson stars, that is, static solutions with compact support of the full system with self-gravitation taken into account. Concretely, there exist two types of solutions, namely compact balls on the one hand, and compact shells on the other hand. The compact balls have a naked singularity at the center. The inner boundary of the compact shells is singular, as well, but it is, at the same time, a Killing horizon. These singular, compact shells therefore resemble black holes.

Adam, C; Klimas, P; Sánchez-Guillén, J; Wereszczynski, A

2009-01-01T23:59:59.000Z

415

Momentum dissipation and effective theories of coherent and incoherent transport  

E-Print Network [OSTI]

We study heat transport in two systems without momentum conservation: a hydrodynamic system, and a holographic system with spatially dependent, massless scalar fields. When momentum dissipates slowly, there is a well-defined, coherent collective excitation in the AC heat conductivity, and a crossover between sound-like and diffusive transport at small and large distance scales. When momentum dissipates quickly, there is no such excitation in the incoherent AC heat conductivity, and diffusion dominates at all distance scales. For a critical value of the momentum dissipation rate, we compute exact expressions for the Green's functions of our holographic system due to an emergent gravitational self-duality, similar to electric/magnetic duality, and SL(2,R) symmetries. We extend the coherent/incoherent classification to examples of charge transport in other holographic systems: probe brane theories and neutral theories with non-Maxwell actions.

Richard A. Davison; Blaise Goutéraux

2015-01-21T23:59:59.000Z

416

Condensed Matter Theory Center Wednesday, May 18  

E-Print Network [OSTI]

Condensed Matter Theory Center Seminar Wednesday, May 18 11am-12pm 2205 Physics Building Zhengcheng condensed matter physics is based on two theories: symmetry breaking theory for phases and phase transitions

Lathrop, Daniel P.

417

Time Dependent Density Functional Theory An introduction  

E-Print Network [OSTI]

Time Dependent Density Functional Theory An introduction Francesco Sottile LSI, Ecole Polytechnique (ETSF) Time Dependent Density Functional Theory Palaiseau, 7 February 2012 1 / 32 #12;Outline 1 Frontiers 4 Perspectives and Resources Francesco Sottile (ETSF) Time Dependent Density Functional Theory

Botti, Silvana

418

Time Dependent Density Functional Theory An Introduction  

E-Print Network [OSTI]

Time Dependent Density Functional Theory An Introduction Francesco Sottile Laboratoire des Solides) Belfast, 29 Jun 2007 Time Dependent Density Functional Theory Francesco Sottile #12;Intro Formalism Dependent Density Functional Theory Francesco Sottile #12;Intro Formalism Results Resources Outline 1

Botti, Silvana

419

Phenomenological theories of ferroelectric phase transitions  

E-Print Network [OSTI]

Phenomenological theories of ferroelectric phase transitions W. Cao parameter in the free energy expansion, phenomenological theory can also describe inhomogeneous structures appear-Phenomenological parent and product phases. phenomenological theories in multidimensions for describ-Phenomenological

Cao, Wenwu

420

SMITH THEORY FOR ALGEBRAIC VARIETIES PETER SYMONDS  

E-Print Network [OSTI]

SMITH THEORY FOR ALGEBRAIC VARIETIES PETER SYMONDS Abstract.We show how an approach to Smith Theory about group actions on * *CW. 1.Introduction Peter May described in [8] a version of Smith Theory based on Bredon cohomolo

Symonds, Peter

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


421

Dual Superconductor Picture for Strongly-coupled SU(2) Yang-Mills Theory  

E-Print Network [OSTI]

A new framework that fulfills the dual superconductor picture is proposed for the strongly-coupled Yang-Mills theory. This framework is based on the idea that at the classic level the strong-coupling limit of the theory vacuum behaves as a back hole with regard to colors in the sense of the effective field theory, and the theory variables undergo an ultraviolet/infrared scale separation. We show that at the quantum level the strong-coupled theory vacuum is made up of a Bose-condensed many-body system of magnetic charges. We further check this framework by reproducing the dual Abelian-Higgs model from the Yang-Mills theory and the predicting the vacuum type of the theory which is very near to the border between type-I and type-II superconductors and remarkably consistent with the recent simulations.

Duoje Jia; Yi-shi Duan

2006-05-18T23:59:59.000Z

422

Theorizing Practice and Practicing Theory  

E-Print Network [OSTI]

his paper describes the emerging field of practice theory as it is practiced in relation to organizational phenomena. We identify three approaches—empirical, theoretical, and philosophical—that relate to the what, the how, ...

Feldman, Martha S.

423

A Theory of Program Refinement   

E-Print Network [OSTI]

We give a canonical program refinement calculus based on the lambda calculus and classical first-order predicate logic, and study its proof theory and semantics. The intention is to construct a metalanguage for refinement in which basic principles...

Denney, Ewen WKC

424

Gauge theory webs and surfaces  

E-Print Network [OSTI]

We analyze the perturbative cusp and closed polygons of Wilson lines for massless gauge theories in coordinate space, and express them as exponentials of two-dimensional integrals. These integrals have geometric interpretations, which link renormalization scales with invariant distances.

Ozan Erdo?an; George Sterman

2015-01-29T23:59:59.000Z

425

Topics in double field theory  

E-Print Network [OSTI]

The existence of momentum and winding modes of closed string on a torus leads to a natural idea that the field theoretical approach of string theory should involve winding type coordinates as well as the usual space-time ...

Kwak, Seung Ki

2012-01-01T23:59:59.000Z

426

Inflationary Cosmology: Theory and Phenomenology  

E-Print Network [OSTI]

This article gives a brief overview of some of the theory behind the inflationary cosmology, and discusses prospects for constraining inflation using observations. Particular care is given to the question of falsifiability of inflation or of subsets of inflationary models.

Andrew R Liddle

2001-10-18T23:59:59.000Z

427

Segmental alternations and metrical theory  

E-Print Network [OSTI]

This dissertation focuses on phonological alternations that are influenced or constrained by word-internal prosody, i.e. prominence and foot structure, and what these alternations can tell us about metrical theory. Detailed ...

Vaysman, Olga

2009-01-01T23:59:59.000Z

428

The behavioral theory of contract  

E-Print Network [OSTI]

This work develops a theory of contract grounded in empirical analysis of individuals' experience with and interpretations of form-adhesive contracts. Form-adhesive contracts are unilaterally drafted, typically by ...

Eigen, Zev J. (Zev Jacob)

2009-01-01T23:59:59.000Z

429

Chiral Gauge Theory for Graphene  

E-Print Network [OSTI]

We construct a chiral gauge theory to describe fractionalization of fermions in graphene. Thereby we extend a recently proposed model, which relies on vortex formation. Our chiral gauge fields provide dynamics for the vortices and also couple to the fermions.

R. Jackiw; S. -Y. Pi

2007-05-04T23:59:59.000Z

430

Informative sensing : theory and applications  

E-Print Network [OSTI]

Compressed sensing is a recent theory for the sampling and reconstruction of sparse signals. Sparse signals only occupy a tiny fraction of the entire signal space and thus have a small amount of information, relative to ...

Chang, Hyun Sung

2012-01-01T23:59:59.000Z

431

Thermoelectric Materials by Design: Computational Theory and...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

by Design: Computational Theory and Structure Thermoelectric Materials by Design: Computational Theory and Structure Presentation from the U.S. DOE Office of Vehicle Technologies...

432

Thermoelectric Materials by Design, Computational Theory and...  

Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

by Design, Computational Theory and Structure Thermoelectric Materials by Design, Computational Theory and Structure 2009 DOE Hydrogen Program and Vehicle Technologies Program...

433

Geometric Hamilton-Jacobi Field Theory  

E-Print Network [OSTI]

I briefly review my proposal about how to extend the geometric Hamilton-Jacobi theory to higher derivative field theories on fiber bundles.

Luca Vitagliano

2011-09-08T23:59:59.000Z

434

The Quantum Theory of Optical Communications  

E-Print Network [OSTI]

Communication theory applied to lightwave channels is ordinarily carried out using the semiclassical theory of photodetection. Recent development of nonclassical light sources-whose photodetection statistics require the ...

Shapiro, Jeffrey H.

435

Information theory and climate prediction  

E-Print Network [OSTI]

INFORMATION THEORY AND CLIMATE PREDICTION A Thesis by LAI-YUNG LEUNG Submitted to the Graduate College of Texas A&M University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE May 1988 Major Subject...: Meteorology INFORMATION THEORY AND CLIMATE PREDICTION A Thesis by LAI-YUNG LEUNG Approved as to style and content by: Gerald R. North (Chairman) George L. Huebner (Member) Robert O. Reid (Member) James R. Scoggins (Head of Department) May 19BB...

Leung, Lai-yung

1988-01-01T23:59:59.000Z

436

Effective theory of color superconductivity  

E-Print Network [OSTI]

We briefly review an effective theory of QCD at high baryon density, describing the relevant modes near the Fermi surface. The high density effective theory has properties of reparametrization invariance and gauge invariance, maintained in a subtle way. It also has a positive measure, allowing lattice simulations at high baryon density. We then apply it to gapless superconductors and discuss recent proposals to resolve the magnetic instability of gapless superconductivity.

Deog Ki Hong

2007-07-17T23:59:59.000Z

437

$n$-plectic Maxwell Theory  

E-Print Network [OSTI]

This note provides a detailed treatment of the Multisymplectic Maxwell theory through the general setting developed in [24] [26] [27]. In particular we explore the DeDonder-Weyl theory, the question of algebraic and dynamical observable forms, the copolarization process related to the good search of canonical forms. Finally, we give - for the two dimensional case - some indications for the construction of the higher Lepage-Dedecker correspondence, in the context of the underlying Grassmannian viewpoint.

Dimitri Vey

2014-06-06T23:59:59.000Z

438

Ultrametric Fewnomial Theory  

E-Print Network [OSTI]

. Khovanskii?s results imply that a square system of n real polynomial equations in n variables with total t terms has at most (n+1)t2t(t?1)/2 non-degenerate roots in the positive orthant. Khovanskii?s bound was improved by the work of F. Bihan and F. Sottile.... For more details see [12], [15], [17] and [21]. 1. What Are the p-adic Numbers? Let Q denote the set of rational numbers, we can construct a norm on Q in the following way: Let p be a prime number, and for any integer a ? Z, define the p-adic valuation of a...

Ibrahim Abdelhalim, Ashraf

2011-02-22T23:59:59.000Z

439

Structural and Biochemical Characterization of the Hemophore (HasAp) From Pseudomonas Aeruginosa  

E-Print Network [OSTI]

= 5/2) hexacoordinate; (B) high-spin (S = 5/2) pentacoordinate and (C) low-spin (S = ?) heme complexes. Adapted from [10, 59] ????????????????... 97 Figure 18. 13 C NMR spectra of HasAp, pH 7.0, reconstituted with (A) heme labeled at the C...-membrane receptors in an energy-dependent process which allows the delivery of the iron to the bacteria via a TonB-dependent pathway [10, 15]. P. aeruginosa can also sequester iron from heme containing proteins by employing two heme-uptake systems, namely phu...

Alontaga, Aileen Yung

2008-07-23T23:59:59.000Z

440

Resilience: Theory and Application.  

SciTech Connect (OSTI)

There is strong agreement among policymakers, practitioners, and academic researchers that the concept of resilience must play a major role in assessing the extent to which various entities - critical infrastructure owners and operators, communities, regions, and the Nation - are prepared to respond to and recover from the full range of threats they face. Despite this agreement, consensus regarding important issues, such as how resilience should be defined, assessed, and measured, is lacking. The analysis presented here is part of a broader research effort to develop and implement assessments of resilience at the asset/facility and community/regional levels. The literature contains various definitions of resilience. Some studies have defined resilience as the ability of an entity to recover, or 'bounce back,' from the adverse effects of a natural or manmade threat. Such a definition assumes that actions taken prior to the occurrence of an adverse event - actions typically associated with resistance and anticipation - are not properly included as determinants of resilience. Other analyses, in contrast, include one or more of these actions in their definitions. To accommodate these different definitions, we recognize a subset of resistance- and anticipation-related actions that are taken based on the assumption that an adverse event is going to occur. Such actions are in the domain of resilience because they reduce both the immediate and longer-term adverse consequences that result from an adverse event. Recognizing resistance- and anticipation-related actions that take the adverse event as a given accommodates the set of resilience-related actions in a clear-cut manner. With these considerations in mind, resilience can be defined as: 'the ability of an entity - e.g., asset, organization, community, region - to anticipate, resist, absorb, respond to, adapt to, and recover from a disturbance.' Because critical infrastructure resilience is important both in its own right and because of its implications for community/regional resilience, it is especially important to develop a sound methodology for assessing resilience at the asset/facility level. This objective will be accomplished by collecting data on four broadly defined groups of resilience-enhancing measures: preparedness, mitigation measures, response capabilities, and recovery mechanisms. Table ES-1 illustrates how the six components that define resilience are connected to the actions that enhance the capacity of an entity to be resilient. The relationships illustrated in Table ES-1 provide the framework for developing a survey instrument that will be used to elicit the information required to assess resilience at the asset/facility level. The resilience of a community/region is a function of the resilience of its subsystems, including its critical infrastructures, economy, civil society, governance (including emergency services), and supply chains/dependencies. The number and complexity of these subsystems will make the measurement of resilience more challenging as we move from individual assets/facilities to the community/regional level (where critical infrastructure resilience is only one component). Specific challenges include uncertainty about relationships (e.g., the composition of specific supply chains), data gaps, and time and budget constraints that prevent collection of all of the information needed to construct a comprehensive assessment of the resilience of a specific community or region. These challenges can be addressed, at least partially, by adopting a 'systems approach' to the assessment of resilience. In a systems approach, the extent to which the analysis addresses the resilience of the individual subsystems can vary. Specifically, high-level systems analysis can be used to identify the most important lower-level systems. In turn, within the most important lower-level systems, site assessment data should be collected only on the most critical asset-level components about which the least is known. Implementation of the strategies outlined here to as

Carlson, J.L.; Haffenden, R.A.; Bassett, G.W.; Buehring, W.A.; Collins, M.J., III; Folga, S.M.; Petit, F.D.; Phillips, J.A.; Verner, D.R.; Whitfield, R.G. (Decision and Information Sciences)

2012-02-03T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


441

Molecular Cluster Perturbation Theory. I. Formalism  

E-Print Network [OSTI]

We present second-order molecular cluster perturbation theory (MCPT(2)), a linear scaling methodology to calculate arbitrarily large systems with explicit calculation of individual wavefunctions in a coupled-cluster framework. This new MCPT(2) framework uses coupled-cluster perturbation theory and an expansion in terms of molecular dimer interactions to obtain molecular wavefunctions that are infinite-order in both the electronic fluctuation operator and all possible dimer (and products of dimers) interactions. The MCPT(2) framework has been implemented in the new SIA/Aces4 parallel architecture, making use of the advanced dynamic memory control and fine grained parallelism to perform very large explicit molecular cluster calculations. To illustrate the power of this method, we have computed energy shifts, lattice site dipole moments, and harmonic vibrational frequencies via explicit calculation of the bulk system for the polar and non-polar polymorphs of solid hydrogen fluoride. The explicit lattice size (without using any periodic boundary conditions) was expanded up to 1,000 HF molecules, with 32,000 basis functions and 10,000 electrons. Our obtained HF lattice site dipole moments and harmonic vibrational frequencies agree well with the existing literature.

Jason N. Byrd; Nakul Jindal; Robert W. Molt, Jr.; Rodney J. Bartlett; Beverly A. Sanders; Victor F. Lotrich

2015-03-23T23:59:59.000Z

442

Molecular Cluster Perturbation Theory. I. Formalism  

E-Print Network [OSTI]

We present second-order molecular cluster perturbation theory (MCPT(2)), a methodology to calculate arbitrarily large systems with explicit calculation of individual wavefunctions in a coupled-cluster framework. This new MCPT(2) framework uses coupled-cluster perturbation theory and an expansion in terms of molecular dimer interactions to obtain molecular wavefunctions that are infinite-order in both the electronic fluctuation operator and all possible dimer (and products of dimers) interactions. The MCPT(2) framework has been implemented in the new SIA/ACES parallel architecture, making use of the advanced dynamic memory control and fine grained parallelism to perform very large explicit molecular cluster calculations. To illustrate the power of this method, we have computed energy shifts and lattice site dipole moments via explicit calculation of the bulk system for the polar and non-polar configurations of solid hydrogen fluoride. The explicit lattice size without periodic boundary conditions was expanded up to 1,000 HF molecules, with 32,000 basis functions and 10,000 electrons. Our obtained HF lattice site dipole moments of 2.51 and 2.49 Debye (for the polar and non-polar configurations, respectively) are in good agreement with the existing literature values of 2.51 and 2.47.

Jason N. Byrd; Nakul Jindal; Robert W. Molt, Jr.; Rodney J. Bartlett; Beverly A. Sanders; Victor F. Lotrich

2014-09-06T23:59:59.000Z

443

Molecular Cluster Perturbation Theory. I. Formalism  

E-Print Network [OSTI]

We present second-order molecular cluster perturbation theory (MCPT(2)), a linear scaling methodology to calculate arbitrarily large systems with explicit calculation of individual wavefunctions in a coupled-cluster framework. This new MCPT(2) framework uses coupled-cluster perturbation theory and an expansion in terms of molecular dimer interactions to obtain molecular wavefunctions that are infinite-order in both the electronic fluctuation operator and all possible dimer (and products of dimers) interactions. The MCPT(2) framework has been implemented in the new SIA/ACES parallel architecture, making use of the advanced dynamic memory control and fine grained parallelism to perform very large explicit molecular cluster calculations. To illustrate the power of this method, we have computed energy shifts and lattice site dipole moments via explicit calculation of the bulk system for the polar and non-polar polymorphs of solid hydrogen fluoride. The explicit lattice size without periodic boundary conditions was expanded up to 1,000 HF molecules, with 32,000 basis functions and 10,000 electrons. Our obtained HF lattice site dipole moments and harmonic vibrational frequencies agree well with the existing literature.

Jason N. Byrd; Nakul Jindal; Robert W. Molt, Jr.; Rodney J. Bartlett; Beverly A. Sanders; Victor F. Lotrich

2015-01-14T23:59:59.000Z

444

Liquid pair correlations in four spatial dimensions: Theory versus simulation  

E-Print Network [OSTI]

Using liquid integral equation theory, we calculate the pair correlations of particles that interact via a smooth repulsive pair potential in d = 4 spatial dimensions. We discuss the performance of different closures for the Ornstein-Zernike equation, by comparing the results to computer simulation data. Our results are of relevance to understand crystal and glass formation in high-dimensional systems.

M. Heinen; J. Horbach; H. Löwen

2014-11-06T23:59:59.000Z

445

EE 527 11: Introduction to Detection Theory April 27, 2013  

E-Print Network [OSTI]

or absence of a target. Figure 1: Radar system. We collect a continuous-time measurement x(t) overEE 527 11: Introduction to Detection Theory April 27, 2013 Contents Motivation 1 Example: Radar) 12 Bayes risk and average error probability 13 Nuisance Parameters 13 Simple hypotheses 14 DC Level

Dogandzic, Aleksandar

446

Communication: Random phase approximation renormalized many-body perturbation theory  

SciTech Connect (OSTI)

We derive a renormalized many-body perturbation theory (MBPT) starting from the random phase approximation (RPA). This RPA-renormalized perturbation theory extends the scope of single-reference MBPT methods to small-gap systems without significantly increasing the computational cost. The leading correction to RPA, termed the approximate exchange kernel (AXK), substantially improves upon RPA atomization energies and ionization potentials without affecting other properties such as barrier heights where RPA is already accurate. Thus, AXK is more balanced than second-order screened exchange [A. Grüneis et al., J. Chem. Phys. 131, 154115 (2009)], which tends to overcorrect RPA for systems with stronger static correlation. Similarly, AXK avoids the divergence of second-order Møller-Plesset (MP2) theory for small gap systems and delivers a much more consistent performance than MP2 across the periodic table at comparable cost. RPA+AXK thus is an accurate, non-empirical, and robust tool to assess and improve semi-local density functional theory for a wide range of systems previously inaccessible to first-principles electronic structure calculations.

Bates, Jefferson E.; Furche, Filipp, E-mail: filipp.furche@uci.edu [Department of Chemistry, University of California, Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025 (United States)] [Department of Chemistry, University of California, Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025 (United States)

2013-11-07T23:59:59.000Z

447

Hamilton-Jacobi theory and the evolution operator  

E-Print Network [OSTI]

We present a new setting of the geometric Hamilton-Jacobi theory by using the so-called time-evolution operator K. This new approach unifies both the Lagrangian and the Hamiltonian formulation of the problem developed in a previous paper [7], and can be applied to the case of singular Lagrangian dynamical systems.

J. F. Carinena; X. Gracia; E. Martinez; G. Marmo; M. C. Munoz-Lecanda; N. Roman-Roy

2009-07-06T23:59:59.000Z

448

The monopole mass in the random percolation gauge theory  

E-Print Network [OSTI]

We study the behaviour of the monopole at finite temperature in the (2+1)-dimensional lattice gauge theory dual to the percolation model; by exploiting the correspondences to statistical systems, we possess powerful tools to evaluate the monopole mass both above and below the critical temperature with high-precision Monte Carlo simulations.

Pietro Giudice; Ferdinando Gliozzi; Stefano Lottini

2008-11-17T23:59:59.000Z

449

Chemical Organization Theory as a Theoretical Base for Chemical Computing  

E-Print Network [OSTI]

Chemical Organization Theory as a Theoretical Base for Chemical Computing NAOKI MATSUMARU, FLORIAN-07743 Jena, Germany http://www.minet.uni-jena.de/csb/ Submitted 14 November 2005 In chemical computing- gramming chemical systems a theoretical method to cope with that emergent behavior is desired

Dittrich, Peter

450

Density Functional Theory-Based Database Development and CALPHAD Automation  

E-Print Network [OSTI]

Density Functional Theory-Based Database Development and CALPHAD Automation YI WANG,1,2 SHUNLI, the integration of first-principles calculations, CALPHAD modeling, and the automation of phase diagram, and the automated calculation of a phase diagram for the Al- Mg system. INTRODUCTION In thermodynamics, a phase

Chen, Long-Qing

451

Dynamic microscopic theory of fusion using DC-TDHF  

SciTech Connect (OSTI)

The density-constrained time-dependent Hartree-Fock (DC-TDHF) theory is a fully microscopic approach for calculating heavy-ion interaction potentials and fusion cross sections below and above the fusion barrier. We discuss recent applications of DC-TDHF method to fusion of light and heavy systems.

Umar, A. S.; Oberacker, V. E.; Keser, R.; Maruhn, J. A.; Reinhard, P.-G. [Department of Physics and Astronomy, Vanderbilt University, Nashville, Tennessee 37235 (United States); RTE University, Science and Arts Faculty, Department of Physics, 53100, Rize (Turkey); Institut fuer Theoretische Physik, Goethe-Universitaet, D-60438 Frankfurt am Main (Germany); Institut fur Theoretische Physik, Universitat Erlangen, D-91054 Erlangen (Germany)

2012-10-20T23:59:59.000Z

452

Subsystem real-time Time Dependent Density Functional Theory  

E-Print Network [OSTI]

We present the extension of Frozen Density Embedding (FDE) theory to real-time Time Dependent Density Functional Theory (rt-TDDFT). FDE a is DFT-in-DFT embedding method that allows to partition a larger Kohn-Sham system into a set of smaller, coupled Kohn-Sham systems. Additional to the computational advantage, FDE provides physical insight into the properties of embedded systems and the coupling interactions between them. The extension to rt-TDDFT is done straightforwardly by evolving the Kohn-Sham subsystems in time simultaneously, while updating the embedding potential between the systems at every time step. Two main applications are presented: the explicit excitation energy transfer in real time between subsystems is demonstrated for the case of the Na$_4$ cluster and the effect of the embedding on optical spectra of coupled chromophores. In particular, the importance of including the full dynamic response in the embedding potential is demonstrated.

Krishtal, Alisa; Pavanello, Michele

2015-01-01T23:59:59.000Z

453

Operational quantum theory without predefined time  

E-Print Network [OSTI]

The current operational formulation of quantum theory is based on the concept of operation with an input and an output system, which assumes a prior notion of time and is asymmetric under time reversal. But in certain contexts, such as those involving gravity, time is expected to be dynamical and not predefined. Here, we propose an operational formulation of quantum theory without any predefined notion of time. It is based on a generalization of the concept of operation motivated by an epistemic approach: an operation is a description of knowledge about the events in a given region, which can be updated conditionally on information obtained from that region. Each such region has a set of boundary systems, which by definition provide the sole means of information exchange between the events in the region and the events in other regions. Separate operations can be connected in networks through their boundary systems with no directionality assumed for the connections, which generalizes the standard circuit picture. The events associated with an operation are described by positive semidefinite operators on the Hilbert spaces of the boundary systems, while the connections between regions are described by entangled states that encode a nontrivial physical symmetry. A simple rule provides the joint probabilities for the events in a network of operations. We discuss how it may be possible to understand the emergence of a causal structure from properties of the operators on the boundaries of compact space-time regions. The framework allows for indefinite causal order, timelike loops, and other acausal structures. As part of this work, we obtain a generalization of Wigner's theorem, which is based on the preservation of probabilities of actual events and thus puts the concept of time reversal symmetry on operational grounds. It contains the possibility for a new class of symmetry transformations.

Ognyan Oreshkov; Nicolas J. Cerf

2014-12-25T23:59:59.000Z

454

Dynamical Wave Function Collapse Models in Quantum Measure Theory  

E-Print Network [OSTI]

The structure of Collapse Models is investigated in the framework of Quantum Measure Theory, a histories-based approach to quantum mechanics. The underlying structure of coupled classical and quantum systems is elucidated in this approach which puts both systems on a spacetime footing. The nature of the coupling is exposed: the classical histories have no dynamics of their own but are simply tied, more or less closely, to the quantum histories.

Fay Dowker; Yousef Ghazi-Tabatabai

2008-05-15T23:59:59.000Z

455

Jacek Dobaczewski Density functional theory and energy  

E-Print Network [OSTI]

Jacek Dobaczewski Density functional theory and energy density functionals in nuclear physics Jacek Functional #12;Jacek Dobaczewski Mean-Field Theory Density Functional Theory · mean-field one? Density Functional Theory: A variational method that uses observables as variational parameters. #12;Jacek

Dobaczewski, Jacek

456

Density functional theory George F. Bertsch  

E-Print Network [OSTI]

Density functional theory George F. Bertsch #3; Institute for Nuclear Theory and Department of Physics University of Tsukuba Tsukuba 305-8577 Japan Abstract Density functional theory is a remarkably Time-dependent density functional theory: the equations 34 A Optical properties

Bertsch George F.

457

3D N = 4 Gauge Theory Compactication  

E-Print Network [OSTI]

Outline 3D N = 4 Gauge Theory Compactication Twistors 3D N = 4 Supersymmetric Gauge Theories and Hyperk¨ahler Metrics Richard Eager UCSB Friday, October 17th, 2008, 4:00 p.m. Richard Eager UCSB 3D N = 4 Supersymmetric Gauge Theories and Hyperk¨ahler M #12;Outline 3D N = 4 Gauge Theory Compactication Twistors

Bigelow, Stephen

458

Multipactor theory for multicarrier signals  

SciTech Connect (OSTI)

This work presents a new theory of multipactor under multicarrier signals for parallel-plate geometries, assuming a homogeneous electric field and one-dimensional electron motion. It is the generalization of the nonstationary multipactor theory for single-carrier signals [S. Anza et al.,Phys. Plasmas 17, 062110 (2010)]. It is valid for multicarrier signals with an arbitrary number of carriers with different amplitude, arbitrary frequency, and phase conditions and for any material coating. This new theory is able to model the real dynamics of the electrons during the multipactor discharge for both single and double surface interactions. Among other parameters of the discharge, it calculates the evolution in time of the charge growth, electron absorption, and creation rates as well as the instantaneous secondary emission yield and order. An extensive set of numerical tests with particle-in-cell software has been carried out in order to validate the theory under many different conditions. This theoretical development constitutes the first multipactor theory which completely characterizes the multipactor discharge for arbitrary multicarrier signals, setting the first step for further investigations in the field.

Anza, S.; Vicente, C.; Gil, J. [Aurora Software and Testing S.L., Edificio de Desarrollo Empresarial 9B, Universidad Politecnica de Valencia, Camino de Vera s/n, 46022 Valencia (Spain); Mattes, M. [Laboratory of Electromagnetics and Acoustics (LEMA), Ecole Polytechnique Federale de Lausanne (EPFL), P.O. Box Station 11, Office ELB 017, CH-1015 Lausanne (Switzerland); Raboso, D. [Payloads Systems Division, European Space Agency, 2200-AG Noordwijk (Netherlands); Boria, V. E. [Departamento de Comunicaciones-iTEAM, Universidad Politecnica de Valencia Camino de Vera s/n, 46022 Valencia (Spain); Gimeno, B. [Departamento de Fisica Aplicada y Electromagnetismo-ICMUV, Universitat de Valencia, c/Dr. Moliner 50, 46100 Valencia (Spain)

2011-03-15T23:59:59.000Z

459

Sleeve reaction chamber system  

DOE Patents [OSTI]

A chemical reaction chamber system that combines devices such as doped polysilicon for heating, bulk silicon for convective cooling, and thermoelectric (TE) coolers to augment the heating and cooling rates of the reaction chamber or chambers. In addition the system includes non-silicon-based reaction chambers such as any high thermal conductivity material used in combination with a thermoelectric cooling mechanism (i.e., Peltier device). The heat contained in the thermally conductive part of the system can be used/reused to heat the device, thereby conserving energy and expediting the heating/cooling rates. The system combines a micromachined silicon reaction chamber, for example, with an additional module/device for augmented heating/cooling using the Peltier effect. This additional module is particularly useful in extreme environments (very hot or extremely cold) where augmented heating/cooling would be useful to speed up the thermal cycling rates. The chemical reaction chamber system has various applications for synthesis or processing of organic, inorganic, or biochemical reactions, including the polymerase chain reaction (PCR) and/or other DNA reactions, such as the ligase chain reaction.

Northrup, M. Allen (Berkeley, CA); Beeman, Barton V. (San Mateo, CA); Benett, William J. (Livermore, CA); Hadley, Dean R. (Manteca, CA); Landre, Phoebe (Livermore, CA); Lehew, Stacy L. (Livermore, CA); Krulevitch, Peter A. (Pleasanton, CA)

2009-08-25T23:59:59.000Z

460

Structure and Biochemical Properties of PRL-1, a Phosphatase Implicated in Cell Growth, Differentiation, and Tumor Invasion  

SciTech Connect (OSTI)

The PRL (phosphatase of regenerating liver) phosphatases constitute a novel class of small, prenylated phosphatases that are implicated in promoting cell growth, differentiation, and tumor invasion, and represent attractive targets for anticancer therapy. Here we describe the crystal structures of native PRL-1 as well as the catalytically inactive mutant PRL-1/C104S in complex with sulfate. PRL-1 exists as a trimer in the crystalline state, burying 1140 Angstroms{sup 2} of accessible surface area at each dimer interface. Trimerization creates a large, bipartite membrane-binding surface in which the exposed C-terminal basic residues could cooperate with the adjacent prenylation group to anchor PRL-1 on the acidic inner membrane. Structural and kinetic analyses place PRL-1 in the family of dual specificity phosphatases with closest structural similarity to the Cdc14 phosphatase and provide a molecular basis for catalytic activation of the PRL phosphatases. Finally, native PRL-1 is crystallized in an oxidized form in which a disulfide is formed between the active site Cys104 and a neighboring residue Cys49, which blocks both substrate binding and catalysis. Biochemical studies in solution and in the cell support a potential regulatory role of this intramolecular disulfide bond formation in response to reactive oxygen species such as H{sub 2}O{sub 2}.

Sun,J.; Wang, W.; Yang, H.; Liu, S.; Liang, F.; Fedorov, A.; Almo, S.; Zhang, Z.

2005-01-01T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


461

Free Energy of ABJM Theory  

E-Print Network [OSTI]

The free energy of ABJM theory has previously been computed in the strong and weak coupling limits. In this note, we report on results for the computation of the first non-vanishing quantum correction to the free energy, from the field theory side. The correction can be expressed in terms of a thermal mass for the scalar fields. This mass vanishes to 1-loop order, but there is a non-vanishing result to 2-loop order. Hence, the leading correction to the free energy is non-analytic in the 't Hooft coupling constant lambda. The reason is that the infrared divergences necessitate a resummation of ring diagrams and a related reorganization of perturbation theory, in which already the leading correction receives contributions from all orders in lambda. These results suggest that the free energy interpolates smoothly between weak and strong coupling.

Mikael Smedbäck

2011-03-24T23:59:59.000Z

462

Indications of a non-trivial vacuum in the effective theory of perfect fluids  

E-Print Network [OSTI]

Using lattice field theory techniques, we investigate the vacuum structure of the field theory corresponding to perfect fluid dynamics in the Lagrangian prescription. We find intriguing, but inconclusive evidence, that the vacuum of such a theory is non-trivial, casting doubts on whether the gradient expansion can provide a good effective field theory for this type of system. The non-trivial vacuum looks like a "turbulent" state where some of the entropy is carried by macroscopic degrees of freedom. We describe further steps to strengthen or falsify this evidence.

Burch, Tommy

2015-01-01T23:59:59.000Z

463

Indications of a non-trivial vacuum in the effective theory of perfect fluids  

E-Print Network [OSTI]

Using lattice field theory techniques, we investigate the vacuum structure of the field theory corresponding to perfect fluid dynamics in the Lagrangian prescription. We find intriguing, but inconclusive evidence, that the vacuum of such a theory is non-trivial, casting doubts on whether the gradient expansion can provide a good effective field theory for this type of system. The non-trivial vacuum looks like a "turbulent" state where some of the entropy is carried by macroscopic degrees of freedom. We describe further steps to strengthen or falsify this evidence.

Tommy Burch; Giorgio Torrieri

2015-02-18T23:59:59.000Z

464

Loop Quantum Theory Applied to Biology and Nonlinear Whole Biology  

E-Print Network [OSTI]

The loop quantum theory, which constitutes a very small discontinuous space, as new method is applied to biology. The model of protein folding and lungs is proposed. In the model, some known results are used, and four approximate conclusions are obtained: their structures are quantized, their space regions are finite, various singularities correspond to folding and crossed points, and different types of catastrophe exist. Further, based on the inseparability and correlativity of the biological systems, the nonlinear whole biology is proposed, and four basic hypotheses are formed. It may unify reductionism and holism, structuralism and functionalism. Finally, the medical meaning of the theory is discussed briefly.

Yi-Fang Chang

2008-01-02T23:59:59.000Z

465

A Classical Density-Functional Theory for Describing Water Interfaces  

E-Print Network [OSTI]

We develop a classical density functional for water which combines the White Bear fundamental-measure theory (FMT) functional for the hard sphere fluid with attractive interactions based on the Statistical Associating Fluid Theory (SAFT-VR). This functional reproduces the properties of water at both long and short length scales over a wide range of temperatures, and is computationally efficient, comparable to the cost of FMT itself. We demonstrate our functional by applying it to systems composed of two hard rods, four hard rods arranged in a square and hard spheres in water.

Jessica Hughes; Eric Krebs; David Roundy

2012-08-31T23:59:59.000Z

466

Generalizing entanglement via informational invariance for arbitrary statistical theories  

E-Print Network [OSTI]

Given an arbitrary statistical theory, di?erent from quantum mechanics, how to decide which are the nonclassical correlations? We present a formal framework which allows for a definition of nonclassical correlations in such theories, alternative to the current one. This enables one to formulate extrapolations of some important quantum mechanical features via adequate extensions of reciprocal maps relating states of a system with states of its subsystems. These extended maps permit one to generalize i) separability measures to any arbitrary statistical model as well as ii) previous entanglement criteria. The standard definition of entanglement becomes just a particular case of the ensuing, more general notion.

F. Holik; C. Massri; A. Plastino

2014-06-04T23:59:59.000Z

467

Geometry, topology, and string theory  

SciTech Connect (OSTI)

A variety of scenarios are considered which shed light upon the uses and limitations of classical geometric and topological notions in string theory. The primary focus is on situations in which D-brane or string probes of a given classical space-time see the geometry quite differently than one might naively expect. In particular, situations in which extra dimensions, non-commutative geometries as well as other non-local structures emerge are explored in detail. Further, a preliminary exploration of such issues in Lorentzian space-times with non-trivial causal structures within string theory is initiated.

Varadarajan, Uday

2003-07-10T23:59:59.000Z

468

Theory of Polar Blue Phases  

E-Print Network [OSTI]

In liquid crystals, if flexoelectric couplings between polar order and director gradients are strong enough, the uniform nematic phase can become unstable to formation of a modulated polar phase. Previous theories have predicted two types of modulation, twist-bend and splay-bend; the twist-bend phase has been found in recent experiments. Here, we investigate other types of modulation, using lattice simulations and Landau theory. In addition to twist-bend and splay-bend, we also find polar blue phases, with 2D or 3D modulations of both director and polar order. We compare polar blue phases with chiral blue phases, and discuss opportunities for observing them experimentally.

Shaikh M. Shamid; David W. Allender; Jonathan V. Selinger

2014-05-22T23:59:59.000Z

469

Conservation in signal processing systems  

E-Print Network [OSTI]

Conservation principles have played a key role in the development and analysis of many existing engineering systems and algorithms. In electrical network theory for example, many of the useful theorems regarding the ...

Baran, Thomas A. (Thomas Anthony)

2012-01-01T23:59:59.000Z

470

Projection and Reaction for Decision Support in Refineries: Combining Multiple Theories  

E-Print Network [OSTI]

Projection and Reaction for Decision Support in Refineries: Combining Multiple Theories Kurt D system to provide decision support for refinery operations personnel (Krebsbach & Musliner 1997; Musliner to provide sufficiently flexible decision support in complex environments. Background: Refinery Control

Krebsbach, Kurt D.

471

Condensed Matter Theory Center Seminar Tuesday, October 28 at 11:00 AM  

E-Print Network [OSTI]

Condensed Matter Theory Center Seminar Tuesday, October 28 at 11:00 AM 2205 Physics Building bosons neither condense (and become a superfluid) nor localize (and insulate) at T=0. The system

Lathrop, Daniel P.

472

Analysis of decentralized potential field based multi-agent navigation via primal-dual Lyapunov theory  

E-Print Network [OSTI]

We use a combination of primal and dual Lyapunov theory for almost global asymptotic stabilization and collision avoidance in multi-agent systems. Previous work provided local analysis around the critical points with the ...

Dimarogonas, Dimos V.

473

Can weakly nonlinear theory explain Faraday wave patterns near onset?  

E-Print Network [OSTI]

The Faraday problem is an important pattern-forming system that provides some middle ground between systems where the initial instability involves just a single mode and in which complexity then results from mode interactions or secondary bifurcations, and cases where a system is highly turbulent and many spatial and temporal modes are excited. It has been a rich source of novel patterns and of theoretical work aimed at understanding how and why such patterns occur. Yet it is particularly challenging to tie theory to experiment: the experiments are difficult to perform; the parameter regime of interest (large box, moderate viscosity) along with the technical difficulties of solving the free boundary Navier--Stokes equations make numerical solution of the problem hard; and the fact that the instabilities result in an entire circle of unstable wavevectors presents considerable theoretical difficulties. In principle, weakly nonlinear theory should be able to predict which patterns are stable near pattern onset. ...

Skeldon, A C

2015-01-01T23:59:59.000Z

474

Modified Brans-Dicke theory with space-time anisotropic parameters  

E-Print Network [OSTI]

We consider the ADM formalism of the Brans-Dicke theory and propose an anisotropic extension of the theory by introducing five free parameters. We find that the resulting theory reveals many interesting aspects which are not present in the original BD theory. We first discuss the ghost instability and strong coupling problems which are present in the gravity theory without the full diffeomorphism symmetry and show that they can be avoided in a region of the parameter space. We also perform the post-Newtonian approximation and show that the constraint of the Brans-Dicke parameter $\\omega_{{\\rm BD}}$ being large to be consistent with the solar system observations could be evaded in the extended theory. We also discuss that accelerating Universe can be achieved without the need of the potential for the Brans-Dicke scalar.

Taeyoon Moon; Phillial Oh

2014-02-22T23:59:59.000Z

475

15-Year biochemical relapse free survival in clinical Stage T1-T3 prostate cancer following combined external beam radiotherapy and brachytherapy; Seattle experience  

SciTech Connect (OSTI)

Purpose: Long-term biochemical relapse-free survival (BRFS) rates in patients with clinical Stages T1-T3 prostate cancer continue to be scrutinized after treatment with external beam radiation therapy and brachytherapy. Methods and Materials: We report 15-year BRFS rates on 223 patients with clinically localized prostate cancer that were consecutively treated with I{sup 125} or Pd {sup 103} brachytherapy after 45-Gy neoadjuvant EBRT. Multivariate regression analysis was used to create a pretreatment clinical prognostic risk model using a modified American Society for Therapeutic Radiology and Oncology consensus definition (two consecutive serum prostate-specific antigen rises) as the outcome. Gleason scoring was performed by the pathologists at a community hospital. Time to biochemical failure was calculated and compared by using Kaplan-Meier plots. Results: Fifteen-year BRFS for the entire treatment group was 74%. BRFS using the Memorial Sloan-Kettering risk cohort analysis (95% confidence interval): low risk, 88%, intermediate risk 80%, and high risk 53%. Grouping by the risk classification described by D'Amico, the BRFS was: low risk 85.8%, intermediate risk 80.3%, and high risk 67.8% (p = 0.002). Conclusions: I{sup 125} or Pd{sup 103} brachytherapy combined with supplemental EBRT results in excellent 15-year biochemical control. Different risk group classification schemes lead to different BRFS results in the high-risk group cohorts.

Sylvester, John E. [Seattle Prostate Institute, Seattle, WA (United States)]. E-mail: johnsylvester@seattleprostate.com; Grimm, Peter D. [Seattle Prostate Institute, Seattle, WA (United States); Blasko, John C. [Seattle Prostate Institute, Seattle, WA (United States); Millar, Jeremy [Department Radiation Oncology, William Buckland Radiotherapy Centre, Melbourne (Australia); Orio, Peter F. [Department Radiation Oncology, University of Washington, Seattle, WA (United States); Skoglund, Scott [Seattle Prostate Institute, Seattle, WA (United States); Galbreath, Robert W. [Schiffler Cancer Center and Wheeling Jesuit University, Wheeling, WV (United States); Ohio University Eastern, St. Clairsville, OH (United States); Merrick, Gregory [Schiffler Cancer Center and Wheeling Jesuit University, Wheeling, WV (United States)

2007-01-01T23:59:59.000Z

476

A Foundation Theory of Quantum Mechanics  

E-Print Network [OSTI]

The nRules are empirical regularities that were discovered in macroscopic situations where the outcome is known. When they are projected theoretically into the microscopic domain they predict a novel ontology including the frequent collapse of an atomic wave function, thereby defining an nRule based foundation theory. Future experiments can potentially discriminate between this and other foundation theories of (non-relativistic) quantum mechanics. Important features of the nRules are: (1) they introduce probability through probability current rather than the Born rule, (2) they are valid independent of size (micro or macroscopic), (3) they apply to individual trials, not just to ensembles of trials. (4) they allow all observers to be continuously included in the system without ambiguity, (5) they account for the collapse of the wave function without introducing new or using old physical constants, and (6) in dense environments they provide a high frequency of stochastic localizations of quantum mechanical objects. Key words: measurement, stochastic choice, state reduction.

Richard A Mould

2006-07-10T23:59:59.000Z

477

Nonextensive lattice gauge theories: algorithms and methods  

E-Print Network [OSTI]

High-energy phenomena presenting strong dynamical correlations, long-range interactions and microscopic memory effects are well described by nonextensive versions of the canonical Boltzmann-Gibbs statistical mechanics. After a brief theoretical review, we introduce a class of generalized heat-bath algorithms that enable Monte Carlo lattice simulations of gauge fields on the nonextensive statistical ensemble of Tsallis. The algorithmic performance is evaluated as a function of the Tsallis parameter q in equilibrium and nonequilibrium setups. Then, we revisit short-time dynamic techniques, which in contrast to usual simulations in equilibrium present negligible finite-size effects and no critical slowing down. As an application, we investigate the short-time critical behaviour of the nonextensive hot Yang-Mills theory at q- values obtained from heavy-ion collision experiments. Our results imply that, when the equivalence of statistical ensembles is obeyed, the long-standing universality arguments relating gauge theories and spin systems hold also for the nonextensive framework.

Rafael B. Frigori

2014-04-26T23:59:59.000Z

478

The general structure of quantum resource theories  

E-Print Network [OSTI]

In recent years it was recognized that properties of physical systems such as entanglement, athermality, and asymmetry, can be viewed as resources for important tasks in quantum information, thermodynamics, and other areas of physics. This recognition followed by the development of specific quantum resource theories (QRTs), such as entanglement theory, determining how quantum states that cannot be prepared under certain restrictions may be manipulated and used to circumvent the restrictions. Here we show that all such QRTs have a general structure, consisting of three components: free states, restricted/allowed set of operations, and resource states. We show that under a few physically motivated assumptions, a QRT is asymptotically reversible if its set of allowed operations is maximal; that is, if the allowed operations are the set of all operations that do not generate (asymptotically) a resource. In this case, the asymptotic conversion rate is given in terms of the regularized relative entropy of a resource which is the unique measure/quantifier of the resource in the asymptotic limit of many copies of the state. We also show that this measure equals the smoothed version of the logarithmic robustness of the resource.

Fernando G. S. L. Brandão; Gilad Gour

2015-02-10T23:59:59.000Z

479

A viscoplastic theory for braze alloys  

SciTech Connect (OSTI)

A new viscoplastic theory for CusilABA and other braze alloys has been developed. Like previous viscoplastic theories,this new theory uses a hyperbolic sine function of effective stress in its kinetic equation for the inelastic strain rate. This new theory has an internal state variable which accounts for isotropic hardening and recovery and a second-order, internal state tensor which accounts for kinematic hardening and recovery. Unlike previous theories, the new theory uses evolution equations for the state variables which describe competing mechanisms of power law hardening and static recovery. The evolution equations used in previous theories describe competing mechanisms of linear hardening, dynamic and static recovery. The new viscoplastic theory was implemented in several finite element codes and used in several metal-to-ceramic brazing simulations. Two approaches for obtaining material parameters for the new viscoplastic theory were developed.

Neilsen, M.K.; Burchett, S.N.; Stone, C.M.; Stephens, J.J.

1996-04-01T23:59:59.000Z

480

A perturbative approach for the study of compatibility between nonminimally coupled gravity and Solar System experiments  

E-Print Network [OSTI]

We develop a framework for constraining a certain class of theories of nonminimally coupled (NMC) gravity with Solar System observations.

Orfeu Bertolami; Riccardo March; Jorge Páramos

2014-03-18T23:59:59.000Z

Note: This page contains sample records for the topic "biochemical systems theory" from the National Library of EnergyBeta (NLEBeta).
While these samples are representative of the content of NLEBeta,
they are not comprehensive nor are they the most current set.
We encourage you to perform a real-time search of NLEBeta
to obtain the most current and comprehensive results.


481

Natural Philosophy and Quantum Theory  

E-Print Network [OSTI]

We attempt to show how relationalism might help in understanding Bell's theorem. We also present an analogy with Darwinian evolution in order to pedagogically hint at how one might go about using a theory in which one does not even desire to explain correlations by invoking common causes.

Thomas Marlow

2006-08-22T23:59:59.000Z

482

Moriond Electroweak 2006: Theory summary  

SciTech Connect (OSTI)

A concise look at the big picture of particle physics, including the status of the Standard Model, neutrinos, supersymmetry, extra dimensions and cosmology. Based upon the theoretical summary presented at the XLIst Rencontres de Moriond on Electroweak Interactions and Unified Theories, La Thuile, 11-18 March 2006.

Lykken, Joseph D.; /Fermilab

2006-07-01T23:59:59.000Z

483

Hamilton's theory of turns revisited  

E-Print Network [OSTI]

We present a new approach to Hamilton's theory of turns for the groups SO(3) and SU(2) which renders their properties, in particular their composition law, nearly trivial and immediately evident upon inspection. We show that the entire construction can be based on binary rotations rather than mirror reflections.

N. Mukunda; S. Chaturvedi; R. Simon

2009-04-30T23:59:59.000Z

484

Quantum Field Theory in Graphene  

E-Print Network [OSTI]

This is a short non-technical introduction to applications of the Quantum Field Theory methods to graphene. We derive the Dirac model from the tight binding model and describe calculations of the polarization operator (conductivity). Later on, we use this quantity to describe the Quantum Hall Effect, light absorption by graphene, the Faraday effect, and the Casimir interaction.

I. V. Fialkovsky; D. V. Vassilevich

2011-11-18T23:59:59.000Z

485

Effective theory for deformed nuclei  

E-Print Network [OSTI]

Techniques from effective field theory are applied to nuclear rotation. This approach exploits the spontaneous breaking of rotational symmetry and the separation of scale between low-energy Nambu-Goldstone rotational modes and high-energy vibrational and nucleonic degrees of freedom. A power counting is established and the Hamiltonian is constructed at next-to-leading order.

T. Papenbrock

2010-11-23T23:59:59.000Z

486

Symmetry Projected Density Functional Theory and Neutron Halo’s  

E-Print Network [OSTI]

The appearance of halo phenomena near the drip line nuclei has challenged our traditional understanding of the nuclei as an incompressible charged liquid drop and extended nuclear physics to low density and inhomogeneous system, where the coupling to the continuum has to be treated in a consistent way. Recently Relativistic Hartree Bogoliubov (RHB) theory in the continuum has been applied successfully to the description of halo phenomena in light and medium heavy nuclei [1, 2, 3]. This theory provides a self-consistent treatment of pairing correlation in the presence of the continuum and allows a microscopic description of halo phenomena in the framework of density functional theory. Essential conditions for the formation of a neutron halo have been found: (a) the Fermi surface of the neutrons has to

unknown authors

487

Sound damping constant for generalized theories of gravity  

SciTech Connect (OSTI)

The near-horizon metric for a black brane in anti-de Sitter space and the metric near the AdS boundary both exhibit hydrodynamic behavior. We demonstrate the equivalence of this pair of hydrodynamic systems for the sound mode of a conformal theory. This is first established for Einstein's gravity, but we then show how the sound damping constant will be modified from its Einstein form for a generalized theory. The modified damping constant is expressible as the ratio of a pair of gravitational couplings that are indicative of the sound-channel class of gravitons. This ratio of couplings differs from both that of the shear diffusion coefficient and the shear viscosity to entropy ratio. Our analysis is mostly limited to conformal theories, but suggestions are made as to how this restriction might eventually be lifted.

Brustein, Ram [Department of Physics, Ben-Gurion University, Beer-Sheva, 84105 (Israel); Medved, A. J. M. [Physics Department, University of Seoul, Seoul 130-743 (Korea, Republic of)

2009-06-15T23:59:59.000Z

488

Resummed thermodynamic perturbation theory for bond cooperativity in associating fluids  

SciTech Connect (OSTI)

We develop a resummed thermodynamic perturbation theory for bond cooperativity in associating fluids by extension of Wertheim's multi-density formalism. We specifically consider the case of an associating hard sphere with two association sites and both pairwise and triplet contributions to the energy, such that the first bond in an associated cluster receives an energy ??{sup (1)} and each subsequent bond in the cluster receives an energy ??{sup (2)}. To test the theory we perform new Monte Carlo simulations for potentials of this type. Theory and simulation are found to be in excellent agreement. We show that decreasing the energetic benefit of hydrogen bonding can actually result in a decrease in internal energy in the fluid. We also predict that when ?{sup (1)} = 0 and ?{sup (2)} is nonzero there is a transition temperature where the system transitions from a fluid of monomers to a mixture of monomers and very long chains.

Marshall, Bennett D., E-mail: bennettd1980@gmail.com; Chapman, Walter G. [Department of Chemical and Biomolecular Engineering, Rice University, 6100 S. Main, Houston, Texas 77005 (United States)] [Department of Chemical and Biomolecular Engineering, Rice University, 6100 S. Main, Houston, Texas 77005 (United States)

2013-12-07T23:59:59.000Z

489

Gelation in Multiple Link Systems  

E-Print Network [OSTI]

Within the framework of the random distribution assumption of cyclic bonds, the theory of gelation is extended to mixing systems of the R-Ag + R-Bf-g model, which is expected to have wider application such as micell formations in biological systems. We derive the gel point expression of this biologically interesting new system.

Kazumi Suematsu

2005-10-24T23:59:59.000Z

490

Considering Control Theory in Resource Management Scenarios A Djafari Marbini and Lionel Sacks  

E-Print Network [OSTI]

loop control system, in addition to the usual scheduling mechanisms. 1 Introduction. The rapid growth in scheduling mechanisms. In control theory terms the scheduling system is dynamic, i.e. the output of the system that is being controlled [1]. This makes it ideal for use in scheduling. A mapping of control

Haddadi, Hamed

491

Biochem. J. (2009) 420, 221227 (Printed in Great Britain) doi:10.1042/BJ20090110 221 GlcNAcstatins are nanomolar inhibitors of human O-GlcNAcase inducing  

E-Print Network [OSTI]

Biochem. J. (2009) 420, 221­227 (Printed in Great Britain) doi:10.1042/BJ20090110 221 GlcA/B (hexosaminidases A/B; CAZY family GH20), genetic inactivation of which has been associated with the Tay

van Aalten, Daan

492

A Wigner Monte Carlo approach to density functional theory  

SciTech Connect (OSTI)

In order to simulate quantum N-body systems, stationary and time-dependent density functional theories rely on the capacity of calculating the single-electron wave-functions of a system from which one obtains the total electron density (Kohn–Sham systems). In this paper, we introduce the use of the Wigner Monte Carlo method in ab-initio calculations. This approach allows time-dependent simulations of chemical systems in the presence of reflective and absorbing boundary conditions. It also enables an intuitive comprehension of chemical systems in terms of the Wigner formalism based on the concept of phase-space. Finally, being based on a Monte Carlo method, it scales very well on parallel machines paving the way towards the time-dependent simulation of very complex molecules. A validation is performed by studying the electron distribution of three different systems, a Lithium atom, a Boron atom and a hydrogenic molecule. For the sake of simplicity, we start from initial conditions not too far from equilibrium and show that the systems reach a stationary regime, as expected (despite no restriction is imposed in the choice of the initial conditions). We also show a good agreement with the standard density functional theory for the hydrogenic molecule. These results demonstrate that the combination of the Wigner Monte Carlo method and Kohn–Sham systems provides a reliable computational tool which could, eventually, be applied to more sophisticated problems.

Sellier, J.M., E-mail: jeanmichel.sellier@gmail.com; Dimov, I.

2014-08-01T23:59:59.000Z

493

Reflection systems and partial root systems Ottmar Loos and Erhard Neher  

E-Print Network [OSTI]

Reflection systems and partial root systems Ottmar Loos and Erhard Neher Abstract. We develop a general theory of reflection systems and, more specifically, partial root sys- tems which provide a unifying framework for finite root systems, Kac-Moody root systems, extended affine root systems

Neher, Erhard

494

Light-front chiral effective field theory  

SciTech Connect (OSTI)

We propose a general framework to calculate the nonperturbative structure of relativistic bound state systems. The state vector of the bound state is calculated in the covariant formulation of light-front dynamics. In this scheme, the state vector is defined on the light front of general position {omega} {center_dot} x = 0, where {omega} is an arbitrary light-like four-vector. This enables a strict control of any violation of rotational invariance. The state vector is then decomposed in Fock components. Our formalism is applied to the description of the nucleon properties at low energy, in chiral perturbation theory. We also show that the use of a recently proposed regularization scheme, the so-called Taylor-Lagrange regularization scheme, is very adequate in order to treat divergences in this nonperturbative framework.

Mathiot, J.-F. [Laboratoire de Physique Corpusculaire (France)] [Laboratoire de Physique Corpusculaire (France); Tsirova, N. A., E-mail: ntsirova@ssu.samara.ru [Samara State University (Russian Federation)

2013-11-15T23:59:59.000Z

495

Two-Mode Theory of BEC Interferometry  

E-Print Network [OSTI]

A theory of BEC interferometry in an unsymmetrical double-well trap has been developed for small boson numbers, based on the two-mode approximation. The bosons are initially in the lowest mode of a single well trap, which is split into a double well and then recombined. Possible fragmentations into separate BEC states in each well during the splitting/recombination process are allowed for. The BEC is treated as a giant spin system, the fragmented states are eigenstates of S^2 and Sz. Self-consistent sets of equations for the amplitudes of the fragmented states and for the two single boson mode functions are obtained. The latter are coupled Gross-Pitaevskii equations. Interferometric effects may be measured via boson numbers in the first excited mode

B J Dalton

2007-02-03T23:59:59.000Z

496

Hydrogen atom in Palatini theories of gravity  

E-Print Network [OSTI]

We study the effects that the gravitational interaction of $f(R)$ theories of gravity in Palatini formalism has on the stationary states of the Hydrogen atom. We show that the role of gravity in this system is very important for lagrangians $f(R)$ with terms that grow at low curvatures, which have been proposed to explain the accelerated expansion rate of the universe. We find that new gravitationally induced terms in the atomic Hamiltonian generate a strong backreaction that is incompatible with the very existence of bound states. In fact, in the 1/R model, Hydrogen disintegrates in less than two hours. The universe that we observe is, therefore, incompatible with that kind of gravitational interaction. Lagrangians with high curvature corrections do not lead to such instabilities.

Gonzalo J. Olmo

2008-06-03T23:59:59.000Z

497

Quantum Theory at the Crossroads: Reconsidering the 1927 Solvay Conference  

E-Print Network [OSTI]

We reconsider the crucial 1927 Solvay conference in the context of current research in the foundations of quantum theory. Contrary to folklore, the interpretation question was not settled at this conference and no consensus was reached; instead, a range of sharply conflicting views were presented and extensively discussed. Today, there is no longer an established or dominant interpretation of quantum theory, so it is important to re-evaluate the historical sources and keep the interpretation debate open. In this spirit, we provide a complete English translation of the original proceedings (lectures and discussions), and give background essays on the three main interpretations presented: de Broglie's pilot-wave theory, Born and Heisenberg's quantum mechanics, and Schroedinger's wave mechanics. We provide an extensive analysis of the lectures and discussions that took place, in the light of current debates about the meaning of quantum theory. The proceedings contain much unexpected material, including extensive discussions of de Broglie's pilot-wave theory (which de Broglie presented for a many-body system), and a "quantum mechanics" apparently lacking in wave function collapse or fundamental time evolution. We hope that the book will contribute to the ongoing revival of research in quantum foundations, as well as stimulate a reconsideration of the historical development of quantum physics. A more detailed description of the book may be found in the Preface. (Copyright by Cambridge University Press (ISBN: 9780521814218).)

Guido Bacciagaluppi; Antony Valentini

2009-10-24T23:59:59.000Z

498

Impact of Ultrahigh Baseline PSA Levels on Biochemical and Clinical Outcomes in Two Radiation Therapy Oncology Group Prostate Clinical Trials  

SciTech Connect (OSTI)

Purpose: To assess ultrahigh (UH; prostate-specific antigen [PSA]levels {>=}50 ng/ml) patient outcomes by comparison to other high-risk patient outcomes and to identify outcome predictors. Methods and Materials: Prostate cancer patients (PCP) from two Phase III Radiation Therapy Oncology Group clinical trials (studies 9202 and 9413) were divided into two groups: high-risk patients with and without UH baseline PSA levels. Predictive variables included age, Gleason score, clinical T stage, Karnofsky performance score, and treatment arm. Outcomes included overall survival (OS), distant metastasis (DM), and biochemical failure (BF). Unadjusted and adjusted hazard ratios (HRs) were calculated using either the Cox or Fine and Gray's regression model with associated 95% confidence intervals (CI) and p values. Results: There were 401 patients in the UH PSA group and 1,792 patients in the non-UH PSA PCP group of a total of 2,193 high-risk PCP. PCP with UH PSA were found to have inferior OS (HR, 1.19; 95% CI, 1.02-1.39, p = 0.02), DM (HR, 1.51; 95% CI, 1.19-1.92; p = 0.0006), and BF (HR, 1.50; 95% CI, 1.29-1.73; p < 0.0001) compared to other high-risk PCP. In the UH cohort, PSA level was found to be a significant factor for the risk of DM (HR, 1.01; 95% CI, 1.001-1.02) but not OS and BF. Gleason grades of 8 to 10 were found to consistently predict for poor OS, DM, and BF outcomes (with HR estimates ranging from 1.41-2.36) in both the high-risk cohort and the UH cohort multivariable analyses. Conclusions: UH PSA levels at diagnosis are related to detrimental changes in OS, DM, and BF. All three outcomes can be modeled by various combinations of all predictive variables tested.

Rodrigues, George, E-mail: george.rodrigues@lhsc.on.c [Department of Oncology, University of Western Ontario, London, Ontario (Canada); Bae, Kyounghwa [Department of Statistics, Radiation Therapy Oncology Group, Philadelphia, Pennsylvania (United States); Roach, Mack [Department of Radiation Oncology, University of California San Francisco, San Francisco, California (United States); Lawton, Colleen [Department of Radiation Oncology, Medical College of Wisconsin, Milwaukee, Wisconsin (United States); Donnelly, Bryan [Department of Surgical Oncology, University of Calgary, Calgary, Alberta (Canada); Grignon, David [Department of Pathology, Indiana Pathology Institute, Indianapolis, Indiana (United States); Hanks, Gerald [Department of Radiation Oncology, Fox Chase Cancer Center, Philadelphia, Pennsylvania (United States); Porter, Arthur [Department of Oncology, McGill University Health Centre, Montreal, Quebec (Canada); Lepor, Herbert [Department of Urology, NY University Langone Medical Center, New York, New York (United States); Sandler, Howard [Department of Radiation Oncology, Cedars-Sinai Medical Center, Los Angeles, California (United States)

2011-06-01T23:59:59.000Z

499

Topics in Noncommutative Gauge Theories and Deformed Relativistic Theories  

E-Print Network [OSTI]

This is my PhD thesis. In this thesis we study the gauge theories on noncommutative Moyal space. We find new static solitons and instantons in terms of the so called generalized Bose operators. Generalized Bose operators are constructed to describe reducible representation of the oscillator algebra. They create/annihilate $k$-quanta, $k$ being a positive integer. We start with giving an alternative description to the already found static magnetic flux tube solutions of the noncommutative gauge theories in terms of generalized Bose operators. The Nielsen-Olesen vortex solutions found in terms of these operators reduce to the already found ones. On the contrary we find a class of new instaton solutions which are unitarily inequivalant to the the ones found from ADHM construction on noncommutative space. The charge of the instaton has a description in terms of the index representing the reducibility of the Fock space, i.e., $k$. After studying the static solitonic solutions in noncommutative Minkowski space and the instaton solutions in noncommutative Euclidean space we go on to study the implications of the time-space noncommutativity in Minkowski space. To understand it properly we study the time-dependent transitions of a forced harmonic oscillator in noncommutative 1+1 dimensional spacetime. We also try to understand the implications of the found results in the context of quantum optics. We then shift to the so called DSR theories which are related to a different kind of noncommutative ($\\kappa$-Minkowski) space. DSR (Doubly/Deformed Special Relativity) aims to search for an alternate relativistic theory which keeps a length/energy scale (the Planck scale) and a velocity scale (the speed of light scale) invariant. We study thermodynamics of an ideal gas in such a scenario.

Nitin Chandra

2013-01-17T23:59:59.000Z

500

Optics, Mechanics and Quantization of Reparametrization Systems  

E-Print Network [OSTI]

In this paper we regard the dynamics obtained from Fermat principle as begin the classical theory of light. We (first-)quantize the action and show how close we can get to the Maxwell theory. We show that Quantum Geometric Optics is not a theory of fields in curved space. Considering Classical Mechanics to be on the same footing, we show the parallelism between Quantum Mechanics and Quantum Geometric Optics. We show that, due to the reparametrization invariance of the classical theories, the dynamics of the quantum theories is given by a Hamiltonian constraint. Some implications of the above analogy in the quantization of true reparameterization invariant systems are discussed.

M. Navarro; J. Guerrero; V. Aldaya

1994-04-20T23:59:59.000Z