National Library of Energy BETA

Sample records for bacterial biofilm development

  1. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Real-Time Chemical Imaging of Bacterial Biofilm Development Print Wednesday, 25 August 2010 00:00 Scientists have ...

  2. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Real-Time Chemical Imaging of Bacterial Biofilm Development Print Wednesday, 25 August 2010 00:00 Scientists have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial biofilms. Almost all bacteria can form biofilms-dynamic communities of cells enclosed in self-produced matrices of polymers that stick to other bacteria or surfaces in water-containing environments. Coordinated collectively,

  3. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Print Scientists have ... The ability to image the chemical reactions in living cells in real time, especially in ...

  4. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Print Scientists have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial biofilms. Almost all bacteria can form biofilms-dynamic communities of cells enclosed in self-produced matrices of polymers that stick to other bacteria or surfaces in water-containing environments. Coordinated collectively, these bacteria defend against antagonists, break down recalcitrant materials, and produce

  5. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Print Scientists have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial biofilms. Almost all bacteria can form biofilms-dynamic communities of cells enclosed in self-produced matrices of polymers that stick to other bacteria or surfaces in water-containing environments. Coordinated collectively, these bacteria defend against antagonists, break down recalcitrant materials, and produce

  6. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Print Scientists have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial biofilms. Almost all bacteria can form biofilms-dynamic communities of cells enclosed in self-produced matrices of polymers that stick to other bacteria or surfaces in water-containing environments. Coordinated collectively, these bacteria defend against antagonists, break down recalcitrant materials, and produce

  7. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Print Scientists have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial biofilms. Almost all bacteria can form biofilms-dynamic communities of cells enclosed in self-produced matrices of polymers that stick to other bacteria or surfaces in water-containing environments. Coordinated collectively, these bacteria defend against antagonists, break down recalcitrant materials, and produce

  8. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Print Scientists have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial biofilms. Almost all bacteria can form biofilms-dynamic communities of cells enclosed in self-produced matrices of polymers that stick to other bacteria or surfaces in water-containing environments. Coordinated collectively, these bacteria defend against antagonists, break down recalcitrant materials, and produce

  9. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Print Scientists have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial biofilms. Almost all bacteria can form biofilms-dynamic communities of cells enclosed in self-produced matrices of polymers that stick to other bacteria or surfaces in water-containing environments. Coordinated collectively, these bacteria defend against antagonists, break down recalcitrant materials, and produce

  10. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Print Scientists have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial biofilms. Almost all bacteria can form biofilms-dynamic communities of cells enclosed in self-produced matrices of polymers that stick to other bacteria or surfaces in water-containing environments. Coordinated collectively, these bacteria defend against antagonists, break down recalcitrant materials, and produce

  11. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Real-Time Chemical Imaging of Bacterial Biofilm Development Print Scientists have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial biofilms. Almost all bacteria can form biofilms-dynamic communities of cells enclosed in self-produced matrices of polymers that stick to other bacteria or surfaces in water-containing environments. Coordinated collectively, these bacteria defend against antagonists, break down recalcitrant materials, and produce

  12. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    researchers studied why the antimicrobial agent mitomycin-C (MMC) does not kill some E. coli in biofilms, focusing on the entrance of MMC into bacterial cells and the subsequent...

  13. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    that shapes biofilm development. This combination of synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectromicroscopy and the microfluidic platform will...

  14. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    microwell edge. To evaluate this technique's potential, researchers studied why the antimicrobial agent mitomycin-C (MMC) does not kill some E. coli in biofilms, focusing on the...

  15. Spatially resolved characterization of biogenic manganese oxideproduction within a bacterial biofilm

    SciTech Connect (OSTI)

    Toner, Brandy; Fakra, Sirine; Villalobos, Mario; Warwick, Tony; Sposito, Garrison

    2004-10-01

    Pseudomonas putida strain MnB1, a biofilm forming bacteria, was used as a model for the study of bacterial Mn oxidation in freshwater and soil environments. The oxidation of Mn{sub (aq)}{sup +2} by P. putida was characterized by spatially and temporally resolving the oxidation state of Mn in the presence of a bacterial biofilm using scanning transmission x-ray microscopy (STXM) combined with near edge x-ray absorption fine structure (NEXAFS) spectroscopy at the Mn-L{sub 2,3} absorption edges. Subsamples were collected from growth flasks containing 0.1 mM and 1 mM total Mn at 16, 24, 36 and 48 hours after inoculation. Immediately after collection, the unprocessed hydrated subsamples were imaged at 40 nm resolution. Manganese NEXAFS spectra were extracted from x-ray energy sequences of STXM images (stacks) and fit with linear combinations of well characterized reference spectra to obtain quantitative relative abundances of Mn(II), Mn(III) and Mn(IV). Careful consideration was given to uncertainty in the normalization of the reference spectra, choice of reference compounds, and chemical changes due to radiation damage. The STXM results confirm that Mn{sub (aq)}{sup +2} was removed from solution by P. putida and was concentrated as Mn(III) and Mn(IV) immediately adjacent to the bacterial cells. The Mn precipitates were completely enveloped by bacterial biofilm material. The distribution of Mn oxidation states was spatially heterogeneous within and between the clusters of bacterial cells. Scanning transmission x-ray microscopy is a promising tool to advance the study of hydrated interfaces between minerals and bacteria, particularly in cases where the structure of bacterial biofilms needs to be maintained.

  16. Laser Desorption Postionization Mass Spectrometry of Antibiotic-Treated Bacterial Biofilms using Tunable Vacuum Ultraviolet Radiation

    SciTech Connect (OSTI)

    Gasper, Gerald L.; Takahashi, Lynelle K.; Zhou, Jia; Ahmed, Musahid; Moore, Jerry F.; Hanley, Luke

    2010-08-04

    Laser desorption postionization mass spectrometry (LDPI-MS) with 8.0 ? 12.5 eV vacuum ultraviolet synchrotron radiation is used to single photon ionize antibiotics andextracellular neutrals that are laser desorbed both neat and from intact bacterial biofilms. Neat antibiotics are optimally detected using 10.5 eV LDPI-MS, but can be ionized using 8.0 eV radiation, in agreement with prior work using 7.87 eV LDPI-MS. Tunable vacuum ultraviolet radiation also postionizes laser desorbed neutrals of antibiotics and extracellular material from within intact bacterial biofilms. Different extracellular material is observed by LDPI-MS in response to rifampicin or trimethoprim antibiotic treatment. Once again, 10.5 eV LDPI-MS displays the optimum trade-off between improved sensitivity and minimum fragmentation. Higher energy photons at 12.5 eV produce significant parent ion signal, but fragment intensity and other low mass ions are also enhanced. No matrix is added to enhance desorption, which is performed at peak power densities insufficient to directly produce ions, thus allowing observation of true VUV postionization mass spectra of antibiotic treated biofilms.

  17. APPLICATIONS OF BIOTECHNOLOGY IN DEVELOPMENT OF BIOMATERIALS: NANOTECHNOLOGY AND BIOFILMS

    SciTech Connect (OSTI)

    Brigmon, R.; Berry, T.; Narayan, R.

    2010-11-29

    Biotechnology is the application of biological techniques to develop new tools and products for medicine and industry. Due to various properties including chemical stability, biocompatibility, and specific activity, e.g. antimicrobial properties, many new and novel materials are being investigated for use in biosensing, drug delivery, hemodialysis, and other medical applications. Many of these materials are less than 100 nanometers in size. Nanotechnology is the engineering discipline encompassing designing, producing, testing, and using structures and devices less than 100 nanometers. One of the challenges associated with biomaterials is microbial contamination that can lead to infections. In recent work we have examined the functionalization of nanoporous biomaterials and antimicrobial activities of nanocrystalline diamond materials. In vitro testing has revealed little antimicrobial activity against Pseudomonas fluorescens bacteria and associated biofilm formation that enhances recalcitrance to antimicrobial agents including disinfectants and antibiotics. Laser scanning confocal microscopy studies further demonstrated properties and characteristics of the material with regard to biofilm formation.

  18. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    1-cm-diameter silicon chip (light green) that has been subjected to deep reactive ion etching to form a hydrophilic microchannel or microwell (measuring 1 mm 20-40 m 10-15...

  19. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    from Berkeley Lab, Lawrence Livermore National Lab, and UC Berkeley coupled infrared (IR) rays from ALS Beamline 1.4.3 to the first open-channel microfluidic platform to...

  20. Real-Time Chemical Imaging of Bacterial Biofilm Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    provides enough water to sustain the living cells without producing interference on mid-IR spectroscopy. The mid-IR light (2.5-15.5 mm wavelength, or 4000-650 cm-1 wavenumber)...

  1. New information about bacterial enzymes to help scientists develop...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    about bacterial enzymes to help scientists develop more effective antibiotics, cancer drugs By Jo Napolitano * November 5, 2015 Tweet EmailPrint Scientists studying the...

  2. Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community

    SciTech Connect (OSTI)

    Mueller, Ryan; Dill, Brian; Pan, Chongle; Belnap, Christopher P.; Thomas, Brian; Verberkmoes, Nathan C; Hettich, Robert {Bob} L; Banfield, Jillian F.

    2011-01-01

    Proteomes of acid mine drainage biofilms at different stages of ecological succession were examined to understand microbial responses to changing community membership. We evaluated the degree of reproducibility of the community proteomes between samples of the same growth stage and found stable and predictable protein abundance patterns across time and sampling space, allowing for a set of 50 classifier proteins to be identified for use in predicting growth stages of undefined communities. Additionally, physiological changes in the dominant species, Leptospirillum Group II, were analysed as biofilms mature. During early growth stages, this population responds to abiotic stresses related to growth on the acid mine drainage solution. Enzymes involved in protein synthesis, cell division and utilization of 1- and 2-carbon compounds were more abundant in early growth stages, suggesting rapid growth and a reorganization of metabolism during biofilm initiation. As biofilms thicken and diversify, external stresses arise from competition for dwindling resources, which may inhibit cell division of Leptospirillum Group II through the SOS response. This population also represses translation and synthesizes more complex carbohydrates and amino acids in mature biofilms. These findings provide unprecedented insight into the physiological changes that may result from competitive interactions within communities in natural environments.

  3. Dynamic Metabolism Studies of Live Bacterial Films

    SciTech Connect (OSTI)

    Majors, Paul D.; Mclean, Jeffrey S.

    2008-11-01

    Bacterial film (biofilm) microbes exist within spatial (nutrient, electron-acceptor, pH, etc.) gradients of their own making. Correspondingly, biofilm bacteria are physiologically and functionally distinct from free-floating bacteria and from their own species at differing biofilm depths. This article describes our efforts to develop noninvasive nuclear magnetic resonance (NMR) technologies for biofilm-metabolism studies. This involves integrating NMR with controlled-cultivation methods to interrogate microbial physiology live and under known growth conditions. NMR is uniquely capable of providing depth-resolved metabolic and transport information in a non-invasive, non-sample-consuming fashion, providing information required for experimental reactive transport studies. We have studied mono-species biofilms relevant to environment remediation and human health. We describe these technologies, discuss their advantages and limitations, and give examples of their application.

  4. New information about bacterial enzymes to help scientists develop more

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    effective antibiotics, cancer drugs | Argonne National Laboratory New information about bacterial enzymes to help scientists develop more effective antibiotics, cancer drugs By Jo Napolitano * November 5, 2015 Tweet EmailPrint Scientists studying the biosynthesis and production of microbial natural products now have a greater insight into the process thanks to research conducted at the U.S. Department of Energy's Argonne National Laboratory in collaboration with scientists from the Scripps

  5. Permeabilizing biofilms

    DOE Patents [OSTI]

    Soukos, Nikolaos S. (Revere, MA); Lee, Shun (Arlington, VA); Doukas,; Apostolos G. (Belmont, MA)

    2008-02-19

    Methods for permeabilizing biofilms using stress waves are described. The methods involve applying one or more stress waves to a biofilm, e.g., on a surface of a device or food item, or on a tissue surface in a patient, and then inducing stress waves to create transient increases in the permeability of the biofilm. The increased permeability facilitates delivery of compounds, such as antimicrobial or therapeutic agents into and through the biofilm.

  6. Microscale Confinement features in microfluidic devices can affect biofilm

    SciTech Connect (OSTI)

    Kumar, Aloke; Karig, David K; Neethirajan, Suresh; Acharya, Rajesh K; Mukherjee, Partha P; Retterer, Scott T; Doktycz, Mitchel John

    2013-01-01

    Biofilms are aggregations of microbes that are encased by extra-cellular polymeric substances (EPS) and adhere to surfaces and interfaces. Biofilm development on abiotic surfaces is a dynamic process, which typically proceeds through an initial phase of adhesion of plankntonic microbes to the substrate, followed by events such as growth, maturation and EPS secretion. However, the coupling of hydrodynamics, microbial adhesion and biofilm growth remain poorly understood. Here, we investigate the effect of semiconfined features on biofilm formation. Using a microfluidic device and fluorescent time-lapse microscopy, we establish that confinement features can significantly affect biofilm formation. Biofilm dynamics change not only as a function of confinement features, but also of the total fluid flow rate, and our combination of experimental results and numerical simulations reveal insights into the link between hydrodynamics and biofilm formation.

  7. IMPACTS OF BIOFILM FORMATION ON CELLULOSE FERMENTATION

    SciTech Connect (OSTI)

    Leschine, Susan

    2009-10-31

    This project addressed four major areas of investigation: i) characterization of formation of Cellulomonas uda biofilms on cellulose; ii) characterization of Clostridium phytofermentans biofilm development; colonization of cellulose and its regulation; iii) characterization of Thermobifida fusca biofilm development; colonization of cellulose and its regulation; and iii) description of the architecture of mature C. uda, C. phytofermentans, and T. fusca biofilms. This research is aimed at advancing understanding of biofilm formation and other complex processes involved in the degradation of the abundant cellulosic biomass, and the biology of the microbes involved. Information obtained from these studies is invaluable in the development of practical applications, such as the single-step bioconversion of cellulose-containing residues to fuels and other bioproducts. Our results have clearly shown that cellulose-decomposing microbes rapidly colonize cellulose and form complex structures typical of biofilms. Furthermore, our observations suggest that, as cells multiply on nutritive surfaces during biofilms formation, dramatic cell morphological changes occur. We speculated that morphological changes, which involve a transition from rod-shaped cells to more rounded forms, might be more apparent in a filamentous microbe. In order to test this hypothesis, we included in our research a study of biofilm formation by T. fusca, a thermophilic cellulolytic actinomycete commonly found in compost. The cellulase system of T. fusca has been extensively detailed through the work of David Wilson and colleagues at Cornell, and also, genome sequence of a T. fusca strain has been determine by the DOE Joint Genome Institute. Thus, T. fusca is an excellent subject for studies of biofilm development and its potential impacts on cellulose degradation. We also completed a study of the chitinase system of C. uda. This work provided essential background information for understanding how C. uda colonizes and degrades insoluble substrates. Major accomplishments of the project include: Development of media containing dialysis tubing (described by the manufacturer as regenerated cellulose) as sole carbon and energy source and a nutritive surface for the growth of cellulolytic bacteria, and development of various microscopic methods to image biofilms on dialysis tubing. Demonstration that cultures of C. phytofermentans, an obligate anaerobe, C. uda, a facultative aerobe, and T. fusca, a filamentous aerobe, formed microbial communities on the surface of dialysis tubing, which possessed architectural features and functional characteristics typical of biofilms. Demonstration that biofilm formation on the nutritive surface, cellulose, involves a complex developmental processes, including colonization of dialysis tubing, formation of cell clusters attached to the nutritive surface, cell morphological changes, formation of complex structures embedded in extracellular polymeric matrices, and dispersal of biofilm communities as the nutritive surface is degraded. Determination of surface specificity and regulatory aspects of biofilm formation by C. phytofermentans, C. uda, and T. fusca. Demonstration that biofilm formation by T. fusca forms an integral part of the life cycle of this filamentous cellulolytic bacterium, including studies on the role of mycelial pellet formation in the T. fusca life cycle and a comparison of mycelial pellets to surface-attached T. fusca biofilms. Characterization of T. fusca biofilm EPS, including demonstration of a functional role for EPS constituents. Correlation of T. fusca developmental life cycle and cellulase gene expression.

  8. Development of a Low Input and sustainable Switchgrass Feedstock Production System Utilizing Beneficial Bacterial Endophytes

    SciTech Connect (OSTI)

    Mei, Chuansheng; Nowak, Jerzy; Seiler, John

    2014-10-24

    Switchgrass represents a promising feedstock crop for US energy sustainability. However, its broad utilization for bioenergy requires improvements of biomass yields and stress tolerance. In this DOE funded project, we have been working on harnessing beneficial bacterial endophytes to enhance switchgrass performance and to develop a low input feedstock production system for marginal lands that do not compete with the production of food crops. We have demonstrated that one of most promising plant growth-promoting bacterial endophytes, Burkholderia phytofirmans strain PsJN, is able to colonize roots and significantly promote growth of switchgrass cv. Alamo under in vitro, growth chamber, greenhouse, as well as field conditions. Furthermore, PsJN bacterization improved growth and development of switchgrass seedlings, significantly stimulated plant root and shoot growth, and tiller number in the field, and enhanced biomass accumulation on both poor (p<0.001) and rich (p<0.05) soils, with more effective stimulation of plant growth in low fertility soil. Plant physiology measurements showed that PsJN inoculated Alamo had consistently lower transpiration, lower stomatal conductance, and higher water use efficiency in greenhouse conditions. These physiological changes may significantly contribute to the recorded growth enhancement. PsJN inoculation rapidly results in an increase in photosynthetic rates which contributes to the advanced growth and development. Some evidence suggests that this initial growth advantage decreases with time when resources are not limited such as in greenhouse studies. Additionally, better drought resistance and drought hardening were observed in PsJN inoculated switchgrass. Using the DOE-funded switchgrass EST microarray, in a collaboration with the Genomics Core Facility at the Noble Foundation, we have determined gene expression profile changes in both responsive switchgrass cv. Alamo and non-responsive cv. Cave-in-Rock (CR) following PsJN bacterization. With the MapMan software to analyze microarray data, the number of up- and down-regulated probes was calculated. The number of up-regulated probes in Alamo was 26, 14, 14, and 12% at 0.5, 2, 4 and 8 days after inoculation (DAI) with PsJN, respectively while the corresponding number in CR was 24, 22, 21, and 19%, respectively. In both cultivars, the largest number of up-regulated probes occurred at 0.5 DAI. Noticeable differences throughout the timeframe between Alamo and CR were that the number was dramatically decreased to half (12%) in Alamo but remained high in CR (approximately 20%). The number of down regulated genes demonstrated different trends in Alamo and CR. Alamo had an increasing trend from 9% at 0.5 DAI to 11, 17, and 28% at 2, 4, and 8 DAI, respectively. However, CR had 13% at 0.5 and 2 DAI, and declined to 10% at 4 and 8 DAI. With the aid of MapMan and PageMan, we mapped the response of the ID probes to the observed major gene regulatory network and major biosynthetic pathway changes associated with the beneficial bacterial endophyte infection, colonization, and early growth promotion process. We found significant differences in gene expression patterns between responsive and non-responsive cultivars in many pathways, including redox state regulation, signaling, proteolysis, transcription factors, as well as hormone (SA and JA in particular)-associated pathways. Form microarray data, a total of 50 key genes have been verified using qPCR. Ten of these genes were chosen for further functional study via either overexpression and/or RNAi knockout technologies. These genes were calmodulin-related calcium sensor protein (CAM), glutathione S-transferase (GST), histidine-containing phosphotransfer protein (H-221), 3 different zinc finger proteins (ZF-371, ZF131 and ZF242), EF hand transcription factor (EF-622), peroxidase, cellulose synthase catalytic submit A2 (CESA2), and Aux/IAA family. A total of 8 overexpression and 5 RNAi transgenic plants have been regenerated, and their gene expression levels determined using qPCR. Consequently

  9. In situ biofilm coupon device

    DOE Patents [OSTI]

    Peyton, B.M.; Truex, M.J.

    1997-06-24

    An apparatus is disclosed for characterization of in-situ microbial biofilm populations in subsurface groundwater. The device permits biofilm-forming microorganisms to adhere to packing material while emplaced in a groundwater strata, so that the packing material can be later analyzed for quantity and type of microorganisms, growth rate, and nutrient requirements. 3 figs.

  10. In situ biofilm coupon device

    DOE Patents [OSTI]

    Peyton, Brent M. (Kennewick, WA); Truex, Michael J. (Richland, WA)

    1997-01-01

    An apparatus for characterization of in-situ microbial biofilm populations in subsurface groundwater. The device permits biofilm-forming microorganisms to adhere to packing material while emplaced in a groundwater strata, so that the packing material can be later analyzed for quantity and type of microorganisms, growth rate, and nutrient requirements.

  11. Adhesion and formation of microbial biofilms in complex microfluidic devices

    SciTech Connect (OSTI)

    Kumar, Aloke [ORNL; Karig, David K [ORNL; Neethirajan, Suresh [University of Guelph; Suresh, Anil K [ORNL; Srijanto, Bernadeta R [ORNL; Mukherjee, Partha P [ORNL; Retterer, Scott T [ORNL; Doktycz, Mitchel John [ORNL

    2012-01-01

    Shewanella oneidensis is a metal reducing bacterium, which is of interest for bioremediation and clean energy applications. S. oneidensis biofilms play a critical role in several situations such as in microbial energy harvesting devices. Here, we use a microfluidic device to quantify the effects of hydrodynamics on the biofilm morphology of S. oneidensis. For different rates of fluid flow through a complex microfluidic device, we studied the spatiotemporal dynamics of biofilms, and we quantified several morphological features such as spatial distribution, cluster formation and surface coverage. We found that hydrodynamics resulted in significant differences in biofilm dynamics. The baffles in the device created regions of low and high flow in the same device. At higher flow rates, a nonuniform biofilm develops, due to unequal advection in different regions of the microchannel. However, at lower flow rates, a more uniform biofilm evolved. This depicts competition between adhesion events, growth and fluid advection. Atomic force microscopy (AFM) revealed that higher production of extra-cellular polymeric substances (EPS) occurred at higher flow velocities.

  12. From Nanowires to Biofilms: An Exploration of Novel Mechanisms of Uranium Transformation Mediated by Geobacter Bacteria

    SciTech Connect (OSTI)

    REGUERA, GEMMA

    2014-01-16

    One promising strategy for the in situ bioremediation of radioactive groundwater contaminants that has been identified by the SBR Program is to stimulate the activity of dissimilatory metal-reducing microorganisms to reductively precipitate uranium and other soluble toxic metals. The reduction of U(VI) and other soluble contaminants by Geobacteraceae is directly dependent on the reduction of Fe(III) oxides, their natural electron acceptor, a process that requires the expression of Geobacters conductive pili (pilus nanowires). Expression of conductive pili by Geobacter cells leads to biofilm development on surfaces and to the formation of suspended biogranules, which may be physiological closer to biofilms than to planktonic cells. Biofilm development is often assumed in the subsurface, particularly at the matrix-well screen interface, but evidence of biofilms in the bulk aquifer matrix is scarce. Our preliminary results suggest, however, that biofilms develop in the subsurface and contribute to uranium transformations via sorption and reductive mechanisms. In this project we elucidated the mechanism(s) for uranium immobilization mediated by Geobacter biofilms and identified molecular markers to investigate if biofilm development is happening in the contaminated subsurface. The results provided novel insights needed in order to understand the metabolic potential and physiology of microorganisms with a known role in contaminant transformation in situ, thus having a significant positive impact in the SBR Program and providing novel concept to monitor, model, and predict biological behavior during in situ treatments.

  13. Three-Dimensional Imaging and Quantification of Biomass and Biofilms in Porous Media

    SciTech Connect (OSTI)

    Dorthe Wildenschild

    2012-10-10

    A new method to resolve biofilms in three dimensions in porous media using high-resolution synchrotron-based x-ray computed microtomography (CMT) has been developed. Imaging biofilms in porous media without disturbing the natural spatial arrangement of the porous media and associated biofilm has been a challenging task, primarily because porous media generally precludes conventional imaging via optical microscopy; x-ray tomography offers a potential alternative. One challenge for using this method is that most conventional x-ray contrast agents are water-soluble and easily diffuse into biofilms. To overcome this problem, silver-coated microspheres were added to the fluid phase to create an x-ray contrast that does not diffuse into the biofilm mass. Using this approach, biofilm imaging in porous media was accomplished with sufficient contrast to differentiate between the biomass- and fluid-filled pore spaces. The method was validated by using a two-dimensional micro-model flow cell where both light microscopy and CMT imaging were used to im age the biofilm. The results of this work has been published in Water Resources Research (Iltis et al., 2010). Additional work needs to be done to optimize this imaging approach, specifically, we find that the quality of the images are highly dependent on the coverage of the biofilm with Ag particles, - which means that we may have issues in dead-end pore space and for very low density (fluffy) biofilms. What we can image for certain with this technique is the biofilm surface that is well-connected to flow paths and thus well-supplied with nutrients etc.

  14. Modeling for Anaerobic Fixed-Bed Biofilm Reactors

    SciTech Connect (OSTI)

    Liu, B. Y. M.; Pfeffer, J. T.

    1989-06-01

    The specific objectives of this research were: 1. to develop an equilibrium model for chemical aspects of anaerobic reactors; 2. to modify the equilibrium model for non-equilibrium conditions; 3. to incorporate the existing biofilm models into the models above to study the biological and chemical behavior of the fixed-film anaerobic reactors; 4. to experimentally verify the validity of these models; 5. to investigate the biomass-holding ability of difference packing materials for establishing reactor design criteria.

  15. DEVELOPMENT OF AN ENVIRONMENTALLY BENIGN MICROBIAL INHIBITOR TO CONTROL INTERNAL PIPELINE CORROSION

    SciTech Connect (OSTI)

    Bill W. Bogan; Brigid M. Lamb; Gemma Husmillo; Kristine Lowe; J. Robert Paterek; John J. Kilbane II

    2004-12-01

    The overall program objective is to develop and evaluate environmentally benign agents or products that are effective in the prevention, inhibition, and mitigation of microbially influenced corrosion (MIC) in the internal surfaces of metallic natural gas pipelines. The goal is to develop one or more environmentally benign (a.k.a. ''green'') products that can be applied to maintain the structure and dependability of the natural gas infrastructure. Various chemicals that inhibit the growth and/or the metabolism of corrosion-associated microbes such as sulfate reducing bacteria, denitrifying bacteria, and methanogenic bacteria were evaluated to determine their ability to inhibit corrosion in experiments utilizing pure and mixed bacterial cultures, and planktonic cultures as well as mature biofilms. Planktonic cultures are easier to inhibit than mature biofilms but several compounds were shown to be effective in decreasing the amount of metal corrosion. Of the compounds tested hexane extracts of Capsicum pepper plants and molybdate were the most effective inhibitors of sulfate reducing bacteria, bismuth nitrate was the most effective inhibitor of nitrate reducing bacteria, and 4-((pyridine-2-yl)methylamino)benzoic acid (PMBA) was the most effective inhibitor of methanogenic bacteria. All of these compounds were demonstrated to minimize corrosion due to MIC, at least in some circumstances. The results obtained in this project are consistent with the hypothesis that any compound that disrupts the metabolism of any of the major microbial groups present in corrosion-associated biofilms shows promise in limiting the amount/rate of corrosion. This approach of controlling MIC by controlling the metabolism of biofilms is more environmentally benign than the current approach involving the use of potent biocides, and warrants further investigation.

  16. Bacterial extracellular lignin peroxidase

    DOE Patents [OSTI]

    Crawford, Donald L. (Moscow, ID); Ramachandra, Muralidhara (Moscow, ID)

    1993-01-01

    A newly discovered lignin peroxidase enzyme is provided. The enzyme is obtained from a bacterial source and is capable of degrading the lignin portion of lignocellulose in the presence of hydrogen peroxide. The enzyme is extracellular, oxidative, inducible by lignin, larch wood xylan, or related substrates and capable of attacking certain lignin substructure chemical bonds that are not degradable by fungal lignin peroxidases.

  17. Annual progress Report on research related to our research project Stabilization of Plutonium in Subsurface Environments via Microbial Reduction and Biofilm Formation funded by the Environmental Remediation Sciences Division (ERSD)

    SciTech Connect (OSTI)

    New, Mary

    2006-06-01

    The overarching goal of this research project is to investigate and optimize the mechanisms for in situ immobilization of Pu species by naturally-occurring bacteria. Specific research objectives are: (a) investigate the mechanism of bacterial accumulation and immobilization of plutonium species by biofilm formation under aerobic conditions and (b) to demonstrate the direct and indirect stabilization of Pu via dissimilatory reduction by Geobacter metallireducens.

  18. Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

    SciTech Connect (OSTI)

    Wang, Jianjun; Shen, Jianhaua; Wu, Yucheng; Tu, Chen; Soininen , Janne; Stegen, James C.; He, Jizheng; Liu, Xingqi; Zhang, Lu; Zhang, Enlou

    2013-02-28

    Increasing evidence emerged for non-random spatial distributions for microbes, but the underlying processes resulting in microbial assemblage variation among and within Earths ecosystems is still lacking. For instance, some studies showed that the deterministic processes by habitat specialization are important, while other studies hold that bacterial communities are assembled by neutral forces. Here we examine the relative importance of deterministic and stochastic processes for bacterial communities from subsurface environments, as well as stream biofilm, lake water, lake sediment and soil using pyrosequencing of 16S rRNA gene. We show that there is a general pattern in phylogenetic signal in species niches across recent evolutionary time for all studied habitats, enabling us to infer the influences of community assembly processes from patterns of phylogenetic turnover in community composition. The phylogenetic dissimilarities among habitat types were significantly higher than within them, and the communities were clustered according to their original habitat types. For communities within habitat types, the highest phylogenetic turnover rate through space was observed in subsurface environments, followed by stream biofilm on mountainsides, whereas the sediment assemblages across regional scales showed the lowest turnover rate. Quantifying phylogenetic turnover as the deviation from a null expectation suggested that measured environmental variables imposed strong selection on bacterial communities for nearly all sample groups, and for three sample groups, that spatial distance reflects unmeasured environmental variables that impose selection, as opposed to spatial isolation. Such characterization of spatial and environmental variables proved essential for proper interpretation of partial mantel results based on observed beta diversity metrics. In summary, our results clearly indicate a dominant role of deterministic processes on bacterial assemblages and highlight that bacteria show strong habitat associations that have likely emerged through evolutionary adaptation.

  19. A biofilm microreactor system for simultaneous electrochemical and nuclear magnetic resonance techniques

    SciTech Connect (OSTI)

    Renslow, Ryan S.; Babauta, Jerome T.; Majors, Paul D.; Mehta, Hardeep S.; Ewing, R. James; Ewing, Thomas; Mueller, Karl T.; Beyenal, Haluk

    2014-03-01

    In order to fully understand electrochemically active biofilms and the limitations to their scale-up in industrial biofilm reactors, a complete picture of the microenvironments inside the biofilm is needed. Nuclear magnetic resonance (NMR) techniques are ideally suited for the study of biofilms and for probing their microenvironments because these techniques allow for non-invasive interrogation and in situ monitoring with high resolution. By combining NMR with simultaneous electrochemical techniques, it is possible to sustain and study live electrochemically active biofilms. Here, we introduce a novel biofilm microreactor system that allows for simultaneous electrochemical and NMR techniques (EC-NMR) at the microscale. Microreactors were designed with custom radiofrequency resonator coils, which allowed for NMR measurements of biofilms growing on polarized gold electrodes. For an example application of this system, we grew Geobacter sulfurreducens biofilms. NMR was used to investigate growth media flow velocities, which were compared to simulated laminar flow, and electron donor concentrations inside the biofilms. We use Monte Carlo error analysis to estimate standard deviations of the electron donor concentration measurements within the biofilm. The EC-NMR biofilm microreactor system can ultimately be used to correlate extracellular electron transfer rates with metabolic reactions and explore extracellular electron transfer mechanisms.

  20. In situ molecular imaging of hydrated biofilm in a microfluidic reactor by ToF-SIMS

    SciTech Connect (OSTI)

    Hua, Xin; Yu, Xiao-Ying; Wang, Zhaoying; Yang, Li; Liu, Bingwen; Zhu, Zihua; Tucker, Abigail E.; Chrisler, William B.; Hill, Eric A.; Thevuthasan, Suntharampillai; Lin, Yuehe; Liu, Songqin; Marshall, Matthew J.

    2014-02-26

    The first results of using a novel single channel microfluidic reactor to enable Shewanella biofilm growth and in situ characterization using time-of-flight secondary ion mass spectrometry (ToF-SIMS) in the hydrated environment are presented. The new microfluidic interface allows direct probing of the liquid surface using ToF-SIMS, a vacuum surface technique. The detection window is an aperture of 2 m in diameter on a thin silicon nitride (SiN) membrane and it allows direct detection of the liquid surface. Surface tension of the liquid flowing inside the microchannel holds the liquid within the aperture. ToF-SIMS depth profiling was used to drill through the SiN membrane and the biofilm grown on the substrate. In situ 2D imaging of the biofilm in hydrated state was acquired, providing spatial distribution of the chemical compounds in the biofilm system. This data was compared with a medium filled microfluidic reactor devoid of biofilm and dried biofilm samples deposited on clean silicon wafers. Principle Component Analysis (PCA) was used to investigate these observations. Our results show that imaging biofilms in the hydrated environment using ToF-SIMS is possible using the unique microfluidic reactor. Moreover, characteristic biofilm fatty acids fragments were observed in the hydrated biofilm grown in the microfluidic channel, illustrating the advantage of imaging biofilm in its native environment.

  1. LATERAL GENE TRANSFER AND THE HISTORY OF BACTERIAL GENOMES

    SciTech Connect (OSTI)

    Howard Ochman

    2006-02-22

    The aims of this research were to elucidate the role and extent of lateral transfer in the differentiation of bacterial strains and species, and to assess the impact of gene transfer on the evolution of bacterial genomes. The ultimate goal of the project is to examine the dynamics of a core set of protein-coding genes (i.e., those that are distributed universally among Bacteria) by developing conserved primers that would allow their amplification and sequencing in any bacterial taxa. In addition, we adopted a bioinformatic approach to elucidate the extent of lateral gene transfer in sequenced genome.

  2. Visualization of Bacterial Microcompartment Facet Assembly Using...

    Office of Scientific and Technical Information (OSTI)

    Visualization of Bacterial Microcompartment Facet Assembly Using High-Speed Atomic Force Microscopy Prev Next Title: Visualization of Bacterial Microcompartment Facet ...

  3. The Initiation of Bacterial DNA Replication

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Initiation of Bacterial DNA Replication Print For the first time, scientists have determined the structure of the initiator of bacterial DNA replication. It is already known...

  4. The Initiation of Bacterial DNA Replication

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Initiation of Bacterial DNA Replication The Initiation of Bacterial DNA Replication Print Wednesday, 31 January 2007 00:00 For the first time, scientists have determined the...

  5. Biofouling: The Journal of Bioadhesion and Biofilm Research

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Biofouling: The Journal of Bioadhesion and Biofilm Research - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Fuel Cycle Defense

  6. Direct measurement and characterization of active photosynthesis zones inside biofuel producing and wastewater remediating microalgal biofilms

    SciTech Connect (OSTI)

    Bernstein, Hans C.; Kesaano, Maureen; Moll, Karen; Smith, Terence; Gerlach, Robin; Carlson, Ross; Miller, Charles D.; Peyton, Brent; Cooksey, Keith; Gardner, Robert D.; Sims, Ronald C.

    2014-03-01

    Abstract: Microalgal biofilm based technologies are of keen interest due to their high biomass concentrations and ability to utilize renewable resources, such as light and CO2. While photoautotrophic biofilms have long been used for wastewater remediation applications, biofuel production represents a relatively new and under-represented focus area. However, the direct measurement and characterization of fundamental parameters required for physiological analyses are challenging due to biofilm heterogeneity. This study evaluated oxygenic photosynthesis and biofuel precursor molecule production using a novel rotating algal biofilm reactor (RABR) operated at field- and laboratory-scales for wastewater remediation and biofuel production, respectively. Clear differences in oxygenic-photosynthesis, respiration and biofuel-precursor capacities were observed between the two systems and different conditions based on light and nitrogen availability. Nitrogen depletion was not found to have the same effect on lipid accumulation compared to prior planktonic studies. Physiological characterizations of these microalgal biofilms identify potential areas for future process optimization.

  7. Activated ClpP kills persisters and eradicates a chronic biofilm infection.

    SciTech Connect (OSTI)

    Conlon, Brian P.; Nakayasu, Ernesto S.; Fleck, Laura E.; LaFleur, Michael D.; Isabella, Vincent M.; Coleman, K.; Leonard, Steve N.; Smith, Richard D.; Adkins, Joshua N.; Lewis, Kim

    2013-11-21

    The current antibiotic crisis stems from two distinct phenomena-drug resistance, and drug tolerance. Resistance mechanisms such as drug efflux or modification prevent antibiotics from binding to their targets 1, allowing pathogens to grow. Antibiotic tolerance is the property of persister cells, phenotypic variants of regular bacteria 2. Antibiotics kill by corrupting targets, but these are inactive in dormant persisters, leading to tolerance. Persisters were first identified by Joseph Bigger in 1944, when he discovered a surviving sub-population of Staphylococcus following treatment with penicillin3. Persisters are largely responsible for recalcitrance of chronic diseases such as tuberculosis, and various infections associated with biofilms - endocarditis, osteomyelitis, infections of catheters and indwelling devices, and deep-seated infections of soft tissues 4. There are a number of redundant pathways involved in persister formation5,6 precluding development of drugs inhibiting their formation. The acyldepsipeptide antibiotic (ADEP 4) has been shown to activate the ClpP protease resulting in death of growing cells 7. Here we show that ADEP4 activated ClpP becomes a fairly non-specific protease and kills persister cells by degradation of over 400 intracellular targets. clpP mutants are resistant to ADEP4 7, but we find that they display increased susceptibility to killing by a range of conventional antibiotics. Combining ADEP4 with rifampicin leads to eradication of persisters, stationary and biofilm populations of Staphylococcus aureus in vitro and in a deep-seated murine infection. Target corruption/activation provides an approach to killing persisters and eradicating chronic infections.

  8. Molecular Characterization of Bacterial Respiration on Minerals

    SciTech Connect (OSTI)

    Blake, Robert C.

    2013-04-26

    The overall aim of this project was to contribute to our fundamental understanding of proteins and biological processes under extreme environmental conditions. We sought to define the biochemical and physiological mechanisms that underlie biodegradative and other cellular processes in normal, extreme, and engineered environments. Toward that end, we sought to understand the substrate oxidation pathways, the electron transport mechanisms, and the modes of energy conservation employed during respiration by bacteria on soluble iron and insoluble sulfide minerals. In accordance with these general aims, the specific aims were two-fold: To identify, separate, and characterize the extracellular biomolecules necessary for aerobic respiration on iron under strongly acidic conditions; and to elucidate the molecular principles whereby these bacteria recognize and adhere to their insoluble mineral substrates under harsh environmental conditions. The results of these studies were described in a total of nineteen manuscripts. Highlights include the following: 1. The complete genome of Acidithiobacillus ferrooxidans ATCC 23270 (type strain) was sequenced in collaboration with the DOE Joint Genome Institute; 2. Genomic and mass spectrometry-based proteomic methods were used to evaluate gene expression and in situ microbial activity in a low-complexity natural acid mine drainage microbial biofilm community. This was the first effort to successfully analyze a natural community using these techniques; 3. Detailed functional and structural studies were conducted on rusticyanin, an acid-stable electron transfer protein purified from cell-free extracts of At. ferrooxidans. The three-dimensional structure of reduced rusticyanin was determined from a combination of homonuclear proton and heteronuclear 15N- and 13C-edited NMR spectra. Concomitantly, the three-dimensional structure of oxidized rusticyanin was determined by X-ray crystallography to a resolution of 1.9 A by multiwavelength anomalous dispersion (MAD) phasing; 4. An acid-stable red cytochrome with a novel absorbance peak at 579 nm was purified from cell-free extracts of L. ferriphilum. Functional studies demonstrated that this cytochrome was an important component of the aerobic iron respiratory chain in this organism; 5. The specific adhesion of At. ferrooxidans to pyrite is mediated by an extracellular protein that was identified as aporusticyanin. The adhesion of At. ferrooxidans to minerals was characterized by high affinity binding that exhibited a high specificity for pyrite over other sulfide minerals. The principal biopolymer involved in this high-affinity adhesion to pyrite was isolated by mineral affinity chromatography and identified as aporusticyanin. The adhesion of purified aporusticyanin to minerals was observed to adhere to different mineral with a pattern of reactivity identical to that observed with the intact bacterium. Further, preincubation of pyrite with excess exogenous aporusticyanin served to inhibit the adherence of intact cells to the surface of the mineral, indicating that the protein and the cells adhered to the pyrite in a mutually exclusive manner. Taken together, these observations support a model where aporusticyanin located on the surface of the bacterial cell acts as a mineral-specific receptor for the initial adherence of At. ferrooxidans to solid pyrite; 6. The specific adhesion of L. ferriphilum to pyrite was mediated by a different acid-stable extracellular protein than aporusticyanin; and 7. A prototype integrating cavity absorption meter (ICAM) was assembled to determine whether this novel spectrophotometer could be used to study cellular respiration in situ.

  9. Magnetic microbes: Bacterial magnetite biomineralization

    SciTech Connect (OSTI)

    Prozorov, Tanya

    2015-09-14

    Magnetotactic bacteria are a diverse group of prokaryotes with the ability to orient and migrate along the magnetic field lines in search for a preferred oxygen concentration in chemically stratified water columns and sediments. These microorganisms produce magnetosomes, the intracellular nanometer-sized magnetic crystals surrounded by a phospholipid bilayer membrane, typically organized in chains. Magnetosomes have nearly perfect crystal structures with narrow size distribution and species-specific morphologies, leading to well-defined magnetic properties. As a result, the magnetite biomineralization in these organisms is of fundamental interest to diverse disciplines, from biotechnology to astrobiology. As a result, this article highlights recent advances in the understanding of the bacterial magnetite biomineralization.

  10. Bacterial Population Genetics in a Forensic Context

    SciTech Connect (OSTI)

    Velsko, S P

    2009-11-02

    This report addresses the recent Department of Homeland Security (DHS) call for a Phase I study to (1) assess gaps in the forensically relevant knowledge about the population genetics of eight bacterial agents of concern, (2) formulate a technical roadmap to address those gaps, and (3) identify new bioinformatics tools that would be necessary to analyze and interpret population genetic data in a forensic context. The eight organisms that were studied are B. anthracis, Y. pestis, F. tularensis, Brucella spp., E. coli O157/H7, Burkholderia mallei, Burkholderia pseudomallei, and C. botulinum. Our study focused on the use of bacterial population genetics by forensic investigators to test hypotheses about the possible provenance of an agent that was used in a crime or act of terrorism. Just as human population genetics underpins the calculations of match probabilities for human DNA evidence, bacterial population genetics determines the level of support that microbial DNA evidence provides for or against certain well-defined hypotheses about the origins of an infecting strain. Our key findings are: (1) Bacterial population genetics is critical for answering certain types of questions in a probabilistic manner, akin (but not identical) to 'match probabilities' in DNA forensics. (2) A basic theoretical framework for calculating likelihood ratios or posterior probabilities for forensic hypotheses based on microbial genetic comparisons has been formulated. This 'inference-on-networks' framework has deep but simple connections to the population genetics of mtDNA and Y-STRs in human DNA forensics. (3) The 'phylogeographic' approach to identifying microbial sources is not an adequate basis for understanding bacterial population genetics in a forensic context, and has limited utility, even for generating 'leads' with respect to strain origin. (4) A collection of genotyped isolates obtained opportunistically from international locations augmented by phylogenetic representations of relatedness will not and enzootic outbreaks noted through international outbreak surveillance systems, and 'representative' genetic sequences from each outbreak. (5) Interpretation of genetic comparisons between an attack strain and reference strains requires a model for the network structure of maintenance foci, enzootic outbreaks, and human outbreaks of that disease, coupled with estimates of mutational rate constants. Validation of the model requires a set of sequences from exemplary outbreaks and laboratory data on mutation rates during animal passage. The necessary number of isolates in each validation set is determined by disease transmission network theory, and is based on the 'network diameter' of the outbreak. (6) The 8 bacteria in this study can be classified into 4 categories based on the complexity of the transmission network structure of their natural maintenance foci and their outbreaks, both enzootic and zoonotic. (7) For B. anthracis, Y. pestis, E. coli O157, and Brucella melitensis, and their primary natural animal hosts, most of the fundamental parameters needed for modeling genetic change within natural host or human transmission networks have been determined or can be estimated from existing field and laboratory studies. (8) For Burkholderia mallei, plausible approaches to transmission network models exist, but much of the fundamental parameterization does not. In addition, a validated high-resolution typing system for characterizing genetic change within outbreaks or foci has not yet been demonstrated, although a candidate system exists. (9) For Francisella tularensis, the increased complexity of the transmission network and unresolved questions about maintenance and transmission suggest that it will be more complex and difficult to develop useful models based on currently available data. (10) For Burkholderia pseudomallei and Clostridium botulinum, the transmission and maintenance networks involve complex soil communities and metapopulations about which very little is known. It is not clear that these pathogens can be brought into the in

  11. Biosynthesis and structural characterization of silver nanoparticles from bacterial isolates

    SciTech Connect (OSTI)

    Zaki, Sahar; El Kady, M.F.; Abd-El-Haleem, Desouky

    2011-10-15

    Graphical abstract: In this study five bacterial isolates belong to different genera were found to be able to biosynthesize silver nanoparticles. Biosynthesis and spectral characterization are reported here. Highlights: {yields} About 300 bacterial isolates were screened for their ability to produce nanosilvers {yields} Five of them were potential candidates for synthesis of silver nanoparticles {yields} Production of silver nanoparticles was examined using UV-Vis, XRD, SEM and EDS. {yields} The presence of nanoparticles with all five bacterial isolates was confirmed. -- Abstract: This study aimed to develop a green process for biosynthesis of silver nanomaterials by some Egyptian bacterial isolates. This target was achieved by screening an in-house culture collection consists of 300 bacterial isolates for silver nanoparticle formation. Through screening process, it was observed that strains belonging to Escherichia coli (S30, S78), Bacillus megaterium (S52), Acinetobacter sp. (S7) and Stenotrophomonas maltophilia (S54) were potential candidates for synthesis of silver nanoparticles. The extracellular production of silver nanoparticles by positive isolates was investigated by UV-Vis spectroscopy, X-ray diffraction (XRD), transmission electron microscope (TEM), scanning electron microscopy (SEM) and energy dispersive X-ray spectroscopy (EDS). The results demonstrated that UV-visible spectrum of the aqueous medium containing silver ion showed a peak at 420 nm corresponding to the plasmon absorbance of silver nanoparticles. Scanning electron microscopy micrograph showed formation of silver nanoparticles in the range of 15-50 nm. XRD-spectrum of the silver nanoparticles exhibited 2{theta} values corresponding to the silver nanocrystal that produce in hexagonal and cubic crystal configurations with different plane of orientation. In addition, the signals of the silver atoms were observed by EDS-spectrum analysis that confirms the presence of silver nanoparticles (AgNPs) in all positive bacterial isolates.

  12. Bacterial Cellulose Composites Opportunities and Challenges

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Bacterial Cellulose Composites Opportunities and Challenges (An important & exciting area that needs more public/private partnership) LEONARD S. FIFIELD, PHD PNNL Applied Materials Science Group Richland, WA June 26, 2012 1 Leonard.Fifield@PNNL.gov What is bacterial cellulose? Why is it unique? June 26, 2012 2 Leonard.Fifield@PNNL.gov Bacterial cellulose-a naturally occurring material: Microbial Exo Poly Saccharides: Dextran, Xanthan, Gellan, Cellulose Gluconacetobacter, Agrobacterium,

  13. Natural bacterial communities serve as quantitative geochemical...

    Office of Scientific and Technical Information (OSTI)

    approach to identify sites contaminated with hydrocarbons from the Deepwater Horizon oil spill, finding that altered bacterial communities encode a memory of prior...

  14. Magnetic microbes: Bacterial magnetite biomineralization

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Prozorov, Tanya

    2015-09-14

    Magnetotactic bacteria are a diverse group of prokaryotes with the ability to orient and migrate along the magnetic field lines in search for a preferred oxygen concentration in chemically stratified water columns and sediments. These microorganisms produce magnetosomes, the intracellular nanometer-sized magnetic crystals surrounded by a phospholipid bilayer membrane, typically organized in chains. Magnetosomes have nearly perfect crystal structures with narrow size distribution and species-specific morphologies, leading to well-defined magnetic properties. As a result, the magnetite biomineralization in these organisms is of fundamental interest to diverse disciplines, from biotechnology to astrobiology. As a result, this article highlights recent advances inmore » the understanding of the bacterial magnetite biomineralization.« less

  15. 3D Reconstruction of Biological Organization and Mineralization in Sediment Attached Biofilms During Uranium Bioremediation

    SciTech Connect (OSTI)

    Banfield, Jillian; Comolli, Luis R.; Singer, Steve

    2014-11-17

    Of central interest in this study were microbial communities attached to sediment particles and in associated groundwater. Are the communities similar? What do the organisms look like and how do they associated with each other? Research was conducted on samples collected from the Department of Energy's (DOE) Rifle Integrated Field Research Challenge (IFRC) site in Rifle, Colorado, USA. This site served first as a test case for in situ bioremediation via biostimulation, and more recently as a location for studying the role of microbial communities in the carbon and other linked biogeochemical cycles. We addressed the question of the nature of planktonic to sediment-attached microbial communities using field and laboratory experimental studies with a range of methods that provide 2- and 3-dimensional topological information coupled to information about chemical speciation, organism type, and activity levels. The research leveraged data from metagenomics and proteomics analyses that obtained through parallel work at the Rifle site in the context of the IFRC. In this project we integrated characterization methods with extensive genomic sequence information and associated environmental data to better understand the processes that occur within groundwater and sediment-attached communities. Notable is the range of characterization methods, including scanning transmission x-ray microscopy (STXM), micro-EXAFS/XANES and microdiffraction and 2D and 3D cryo-electron tomographic analysis, and high-resolutino transmission electron microscope (HRTEM) analysis to characterize these natural microbial communities. A cryo-TEM work was unique because samples for electron microscopic characterization were cryo-plunged directly on site immediately after sampling. This step minimizes post-collection alterations, including cell damages and change of redox state. Among many achievements documented in publications listed at the end of this report, we highlight the following: 1) The development of a platform for routine correlative cryogenic microscopy and spectroscopy with samples prepared on-site. 2) The determination of which organisms dominate planktonic and biofilm communities in the subsurface. 3) Identification of microorganism-mineral associations and discovery of a novel mechanism that sustains activity of iron-reducing bacteria. 4) The detection of bacteria from the OP11-OD1-WWE3 (etc.) radiation and elucidation of their remarkable structural organization by cryog-TEM cryo-electron tomograhpy (cryo-ET). 5) Extensive analysis of biofilms and documentation of the association of cells and Se minerals. 6) The comparison of expressed c-type cytochromes between pure cultures of G. bemidjiensis and related field populations, provided insight into possible molecular mechanisms for U(VI) reduction in the aquifer. At least sixteen publications will result from this project (partial support), which provide both graduate student and post doctoral training.

  16. Characterization of Biofilm in 200W Fluidized Bed Reactors

    SciTech Connect (OSTI)

    Lee, Michelle H.; Saurey, Sabrina D.; Lee, Brady D.; Parker, Kent E.; Eisenhauer, Emalee ER; Cordova, Elsa A.; Golovich, Elizabeth C.

    2014-09-29

    Contaminated groundwater beneath the 200 West Area at the Hanford Site in Southeast Washington is currently being treated using a pump and treat system to remove organics, inorganics, radionuclides, and metals. A granular activated carbon-based fluidized bed reactor (FBR) has been added to remove nitrate, hexavalent chromium and carbon tetrachloride. Initial analytical results indicated the microorganisms effectively reduced many of the contaminants to less than cleanup levels. However shortly thereafter operational upsets of the FBR include carbon carry over, over production of microbial extracellular polymeric substance (biofilm) materials, and over production of hydrogen sulfide. As a result detailed investigations were undertaken to understand the functional diversity and activity of the microbial community present in the FBR over time. Molecular analyses including terminal restriction fragment length polymorphism analysis, quantitative polymerase chain reaction and fluorescent in situ hybridization analyses were performed on the microbial community extracted from the biofilm within the bed and from the inoculum, to determine functional dynamics of the FBR bed over time and following operational changes. Findings from these analyses indicated: 1) the microbial community within the bed was completely different than community used for inoculation, and was likely from the groundwater; 2) analyses early in the testing showed an FBR community dominated by a few Curvibacter and Flavobacterium species; 3) the final sample taken indicated that the microbial community in the FBR bed had become more diverse; and 4) qPCR analyses indicated that bacteria involved in nitrogen cycling, including denitrifiers and anaerobic ammonia oxidizing bacteria, were dominant in the bed. These results indicate that molecular tools can be powerful for determining functional diversity within FBR type reactors. Coupled with micronutrient, influent and effluent chemistry evaluations, a more complete understanding of the balance between system additions (nutrients, groundwater) and biology can be achieved, thus increasing long-term predictions of performance. These analyses uniquely provide information that can be used in optimizing the overall performance, efficiency, and stability of the system both in real time as well as over the long-term, as the system design is altered or improved and/or new streams are added.

  17. Mechanisms of bacterially catalyzed reductive dehalogenation

    SciTech Connect (OSTI)

    Picardal, F.W.

    1992-12-31

    Nine bacteria were tested for the ability to dehalogenate tetrachloromethane (CT), tetrachloroethene (PCE), and 1, 1, 1-trichloroethane (TCA) under anaerobic conditions. Three bacteria were able to reductively dehalogenate CT. Dehalogenation ability was not readily linked to a common metabolism or changes in culture redox potential. None of the bacteria tested were able to dehalogenate PCE or TCA. One of the bacteria capable of dehalogenating CT, Shewanella putrefaciens, was chosen as a model organism to study mechanisms of bacterially catalyzed reductive dehalogenation. The effect of a variety of alternate electron acceptors on CT dehalogenation ability by S. putrefaciens was determined. oxygen and nitrogen oxides were inhibitory but Fe (III), trimethylamine oxide, and fumarate were not. A model of the electron transport chain of S. putrefaciens was developed to explain inhibition patterns. A period of microaerobic growth prior to CT exposure increased the ability of S. putrefaciens to dehalogenate CT. A microaerobic growth period also increased cytochrome concentrations. A relationship between cytochrome content and dehalogenation ability was developed from studies in which cytochrome concentrations in S. putrefaciens were manipulated by changing growth conditions. Stoichiometry studies using {sup 14}C-CT suggested that CT was first reduced to form a trichloromethyl radical. Reduction of the radical to produce chloroform and reaction of the radical with cellular biochemicals explained observed product distributions. Carbon dioxide or other fully dehalogenated products were not found.

  18. Radionuclide scintigraphy of bacterial nephritis

    SciTech Connect (OSTI)

    Conway, J.J.; Weiss, S.C.; Shkolnik, A.; Yogev, R.; Firlit, C.; Traisman, E.S.

    1984-01-01

    Pyelonephritis is a leading cause of renal failure and is expected to cost as much as three billion dollars in 1984. The diagnosis of urinary tract infection is usually not difficult. However, localization of the infection within the renal parenchyma as opposed to the collecting system is much more difficult. Flank pain, fever, bacteiuria and evidence of parenchymal involvement by intravenous urography may be absent or unrecognized particularly in the infant. Ultrasound and Nuclear Medicine are advocated as better methods to define parenchymal involvement. Such definition is important in the consideration of treatment since parenchymal involvement of the kidney carries a much more ominous potential outcome than infection restricted to within the collecting system. 38 children with a clinical diagnosis of urinary tract infection were studied. 26 of the patients demonstrated abnormal renal parenchymal findings with Gallium-67 Citrate or Tc-99m Glucoheptonate scintigraphy. Intravenous urography was notably ineffective with only 5 of the 20 interpreted as abnormal due to parenchymal disease or decreased function. 11 were entirely normal while only 5 demonstrated scars or hydronephrosis. Only 10 of 17 patients demonstrated intranvesicoureteral reflux on x-ray or nuclear cystography. Ultrasound depicted 6 of 20 patients as having parenchymal abnormalities. Seven were normal. Nonspecific findings such as dilitation of the renal pelvis or renal enlargement was noted in 11 of the 20 patients. Radionuclide Scintigraphy is the most efficacious modality to detect since acute bacterial nephritis.

  19. The Initiation of Bacterial DNA Replication

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Initiation of Bacterial DNA Replication The Initiation of Bacterial DNA Replication Print Wednesday, 31 January 2007 00:00 For the first time, scientists have determined the structure of the initiator of bacterial DNA replication. It is already known that such replication is controlled by a protein known as DnaA, a member of the AAA+ superfamily of ATPases. What has now been discovered is that the core of the initiator is not the closed-ring structure expected for this system. Instead, DnaA

  20. 3D Imaging of Microbial Biofilms: Integration of Synchrotron Imaging and an Interactive Visualization Interface

    SciTech Connect (OSTI)

    Thomas, Mathew; Marshall, Matthew J.; Miller, Erin A.; Kuprat, Andrew P.; Kleese van Dam, Kerstin; Carson, James P.

    2014-08-26

    Understanding the interactions of structured communities known as “biofilms” and other complex matrixes is possible through the X-ray micro tomography imaging of the biofilms. Feature detection and image processing for this type of data focuses on efficiently identifying and segmenting biofilms and bacteria in the datasets. The datasets are very large and often require manual interventions due to low contrast between objects and high noise levels. Thus new software is required for the effectual interpretation and analysis of the data. This work specifies the evolution and application of the ability to analyze and visualize high resolution X-ray micro tomography datasets.

  1. Harnessing the Bacterial Power of Nanomagnets

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Harnessing the Bacterial Power of Nanomagnets Harnessing the Bacterial Power of Nanomagnets Print Wednesday, 30 September 2009 00:00 Nanometer-size magnets have wide-ranging uses, from directed cancer therapy and drug delivery systems to magnetic recording media and transducers. Such applications require the production of nanoparticles with well-controlled size and tunable magnetic properties. The synthesis of such nanomagnets, however, often requires elevated temperatures and toxic solvents,

  2. Magnetic microbes: Bacterial magnetite biomineralization (Journal Article)

    Office of Scientific and Technical Information (OSTI)

    | SciTech Connect Magnetic microbes: Bacterial magnetite biomineralization Citation Details In-Document Search This content will become publicly available on September 14, 2016 Title: Magnetic microbes: Bacterial magnetite biomineralization Magnetotactic bacteria are a diverse group of prokaryotes with the ability to orient and migrate along the magnetic field lines in search for a preferred oxygen concentration in chemically stratified water columns and sediments. These microorganisms

  3. Successional trajectories of rhizosphere bacterial communities over

    Office of Scientific and Technical Information (OSTI)

    consecutive seasons (Journal Article) | DOE PAGES Successional trajectories of rhizosphere bacterial communities over consecutive seasons Title: Successional trajectories of rhizosphere bacterial communities over consecutive seasons It is well known that rhizosphere microbiomes differ from those of surrounding soil, and yet we know little about how these root-associated microbial communities change through the growing season and between seasons. We analyzed the response of soil bacteria to

  4. Successional trajectories of rhizosphere bacterial communities over

    Office of Scientific and Technical Information (OSTI)

    consecutive seasons (Journal Article) | SciTech Connect Journal Article: Successional trajectories of rhizosphere bacterial communities over consecutive seasons Citation Details In-Document Search Title: Successional trajectories of rhizosphere bacterial communities over consecutive seasons It is well known that rhizosphere microbiomes differ from those of surrounding soil, and yet we know little about how these root-associated microbial communities change through the growing season and

  5. Bacterial Fermentative Hydrogen Production | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Bacterial Fermentative Hydrogen Production Bacterial Fermentative Hydrogen Production Presentation by Melanie Mormile, Missouri University of Science and Technology, at the Biological Hydrogen Production Workshop held September 24-25, 2013, at the National Renewable Energy Laboratory in Golden, Colorado. PDF icon bio_h2_workshop_mormile.pdf More Documents & Publications 2013 Biological Hydrogen Production Workshop Summary Report Autofermentative Biological Hydrogen Production by

  6. Lessons Learned from Bacterial Transport Experiments at the South Oyster Site

    SciTech Connect (OSTI)

    Scheibe, Timothy D; Hubbard, Susan S; Onstott, Tullis C; Deflaun, Mary F

    2011-09-27

    This paper provides a high-level review of bacterial transport experiments conducted by a multi-investigator, multi-institution, multi-disciplinary team of researchers under the auspices of the U. S. Department of Energy. The experiments considered were conducted during the time period 1999-2001 at a field site near the town of Oyster, Virginia known as the South Oyster Site, and included four major experimental campaigns aimed at understanding and quantifying bacterial transport in the subsurface environment. Several key elements of the research are discussed here: 1) Quantification of bacterial transport in physically and biogeochemically heterogeneous aquifers, 2) evaluation of the efficacy of conventional colloid filtration theory, 3) scale effects in bacterial transport, 4) development of new methods for microbial enumeration and screening for low adhesion strains, 5) application of novel hydrogeophysical techniques for aquifer characterization, and 6) experiences regarding management of a large field research effort.

  7. PEROXOTITANATE- AND MONOSODIUM METAL-TITANATE COMPOUNDS AS INHIBITORS OF BACTERIAL GROWTH

    SciTech Connect (OSTI)

    Hobbs, D.

    2011-01-19

    Sodium titanates are ion-exchange materials that effectively bind a variety of metal ions over a wide pH range. Sodium titanates alone have no known adverse biological effects but metal-exchanged titanates (or metal titanates) can deliver metal ions to mammalian cells to alter cell processes in vitro. In this work, we test a hypothesis that metal-titanate compounds inhibit bacterial growth; demonstration of this principle is one prerequisite to developing metal-based, titanate-delivered antibacterial agents. Focusing initially on oral diseases, we exposed five species of oral bacteria to titanates for 24 h, with or without loading of Au(III), Pd(II), Pt(II), and Pt(IV), and measuring bacterial growth in planktonic assays through increases in optical density. In each experiment, bacterial growth was compared with control cultures of titanates or bacteria alone. We observed no suppression of bacterial growth by the sodium titanates alone, but significant (p < 0.05, two-sided t-tests) suppression was observed with metal-titanate compounds, particularly Au(III)-titanates, but with other metal titanates as well. Growth inhibition ranged from 15 to 100% depending on the metal ion and bacterial species involved. Furthermore, in specific cases, the titanates inhibited bacterial growth 5- to 375-fold versus metal ions alone, suggesting that titanates enhanced metal-bacteria interactions. This work supports further development of metal titanates as a novel class of antibacterials.

  8. Investigations of Structure and Metabolism within Shewanella oneidensis MR-1 Biofilms

    SciTech Connect (OSTI)

    Mclean, Jeffrey S.; Majors, Paul D.; Reardon, Catherine L.; Bilskis, Christina L.; Reed, Samantha B.; Romine, Margaret F.; Fredrickson, Jim K.

    2008-07-01

    Biofilms are known to possess spatially and temporally varying metabolite concentration profiles at the macroscopic and microscopic scales. This results in varying growth environments within that may ultimately drive species diversity, determine biofilm structure and also the spatial arrangement of the community members. Using noninvasive nuclear magnetic resonance (NMR) microscopic imaging/spectroscopy and confocal imaging, we investigated anaerobic reduction kinetics, structural variation, and the stratification of metabolism within live biofilms of the facultative anaerobic dissimilatory metal-reducing Shewanella oneidensis strain MR-1. Biofilms were pregrown using a defined minimal media in a homebuilt constant depth film fermenter and subsequently transferred to an in-magnet sample chamber under laminar flow for NMR measurements. The sample was subjected to various, rapidly switched substrate/ anaerobic electron acceptor combinations (fumarate, dimethyl sulfoxide, and nitrate electron acceptors). Localized NMR spectroscopy was used to non-invasively monitored the spectra of hydrogen-containing metabolites at high temporal resolution (4.5 min) under oxygen-limited conditions. Anaerobic reduction was immediately observed upon switching feed solutions indicate that no gene induction (transcriptional response) was needed for MR-1 to switch between fumarate, dimethyl sulfoxide (DMSO) and nitrate electron acceptors. In parallel experiments, confocal microscopy was used with constitutively expressed fluorescent reporters to independently investigate structural changes in response to the availability of electron acceptor and also the outcome of metabolic competition under oxygen-limited conditions. A clearer understanding of the metabolic diversity and plasticity of the biofilm mode of growth as well as how this possibly translates to the environmental fitness is made possible through the use of non-invasive and non-destructive techniques such as described here.

  9. Synthetic analogs of bacterial quorum sensors

    DOE Patents [OSTI]

    Iyer, Rashi (Los Alamos, NM); Ganguly, Kumkum (Los Alamos, NM); Silks, Louis A. (Los Alamos, NM)

    2011-12-06

    Bacterial quorum-sensing molecule analogs having the following structures: ##STR00001## and methods of reducing bacterial pathogenicity, comprising providing a biological system comprising pathogenic bacteria which produce natural quorum-sensing molecule; providing a synthetic bacterial quorum-sensing molecule having the above structures and introducing the synthetic quorum-sensing molecule into the biological system comprising pathogenic bacteria. Further is provided a method of targeted delivery of an antibiotic, comprising providing a synthetic quorum-sensing molecule; chemically linking the synthetic quorum-sensing molecule to an antibiotic to produce a quorum-sensing molecule-antibiotic conjugate; and introducing the conjugate into a biological system comprising pathogenic bacteria susceptible to the antibiotic.

  10. Synthetic analogs of bacterial quorum sensors

    DOE Patents [OSTI]

    Iyer, Rashi S.; Ganguly, Kumkum; Silks, Louis A.

    2013-01-08

    Bacterial quorum-sensing molecule analogs having the following structures: ##STR00001## and methods of reducing bacterial pathogenicity, comprising providing a biological system comprising pathogenic bacteria which produce natural quorum-sensing molecule; providing a synthetic bacterial quorum-sensing molecule having the above structures and introducing the synthetic quorum-sensing molecule into the biological system comprising pathogenic bacteria. Further is provided a method of targeted delivery of an antibiotic, comprising providing a synthetic quorum-sensing molecule; chemically linking the synthetic quorum-sensing molecule to an antibiotic to produce a quorum-sensing molecule-antibiotic conjugate; and introducing the conjugate into a biological system comprising pathogenic bacteria susceptible to the antibiotic.

  11. The Initiation of Bacterial DNA Replication

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Initiation of Bacterial DNA Replication Print For the first time, scientists have determined the structure of the initiator of bacterial DNA replication. It is already known that such replication is controlled by a protein known as DnaA, a member of the AAA+ superfamily of ATPases. What has now been discovered is that the core of the initiator is not the closed-ring structure expected for this system. Instead, DnaA forms an open right-handed helix. In addition, the architecture indicates

  12. The Initiation of Bacterial DNA Replication

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Initiation of Bacterial DNA Replication Print For the first time, scientists have determined the structure of the initiator of bacterial DNA replication. It is already known that such replication is controlled by a protein known as DnaA, a member of the AAA+ superfamily of ATPases. What has now been discovered is that the core of the initiator is not the closed-ring structure expected for this system. Instead, DnaA forms an open right-handed helix. In addition, the architecture indicates

  13. The Initiation of Bacterial DNA Replication

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    The Initiation of Bacterial DNA Replication Print For the first time, scientists have determined the structure of the initiator of bacterial DNA replication. It is already known that such replication is controlled by a protein known as DnaA, a member of the AAA+ superfamily of ATPases. What has now been discovered is that the core of the initiator is not the closed-ring structure expected for this system. Instead, DnaA forms an open right-handed helix. In addition, the architecture indicates

  14. Developing a low input and sustainable switchgrass feedstock production

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    system utilizing beneficial bacterial endophytes | Department of Energy Developing a low input and sustainable switchgrass feedstock production system utilizing beneficial bacterial endophytes Developing a low input and sustainable switchgrass feedstock production system utilizing beneficial bacterial endophytes Dr. Chuansheng Mei gave this presentation at the Symbiosis Conference. PDF icon symbiosis_conference_mei.pdf More Documents & Publications Symbiosis Biofeedstock Conference:

  15. Gamma-irradiated bacterial preparation having anti-tumor activity

    DOE Patents [OSTI]

    Vass, Arpad A. (Oak Ridge, TN); Tyndall, Richard L. (Clinton, TN); Terzaghi-Howe, Peggy (Montrose, CO)

    1999-01-01

    A bacterial preparation from Pseudomonas species isolated #15 ATCC 55638 that has been exposed to gamma radiation exhibits cytotoxicity that is specific for neoplastic carcinoma cells. A method for obtaining a bacterial preparation having antitumor activity consists of suspending a bacterial isolate in media and exposing the suspension to gamma radiation. A bacterial preparation of an aged culture of an amoeba-associated bacteria exhibits anti-reverse transcriptase activity. A method for obtaining a bacterial preparation having anti-reverse transcriptase activity from an amoeba-associated bacterial isolate grown to stationary phase is disclosed.

  16. A New Link Between Human and Bacterial Signaling Machinery

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    A New Link Between Human and Bacterial Signaling Machinery A New Link Between Human and Bacterial Signaling Machinery Print Tuesday, 19 August 2014 10:34 The human immune system...

  17. The Fate of Marine Bacterial Exopolysaccharide in Natural Marine Microbial

    Office of Scientific and Technical Information (OSTI)

    Communities (Journal Article) | DOE PAGES The Fate of Marine Bacterial Exopolysaccharide in Natural Marine Microbial Communities « Prev Next » Title: The Fate of Marine Bacterial Exopolysaccharide in Natural Marine Microbial Communities Most marine bacteria produce exopolysaccharides (EPS), and bacterial EPS represent an important source of dissolved organic carbon in marine ecosystems. It was proposed that bacterial EPS rich in uronic acid is resistant to mineralization by microbes and

  18. Selenium Speciation in Biofilms from Granular Sludge Bed Reactors Used for Wastewater Treatment

    SciTech Connect (OSTI)

    van Hullenbusch, Eric; Farges, Francois; Lenz, Markus; Lens, Piet; Brown, Gordon E., Jr.; /Stanford U., Geo. Environ. Sci. /SLAC, SSRL

    2006-12-13

    Se K-edge XAFS spectra were collected for various model compounds of Se as well as for 3 biofilm samples from bioreactors used for Se-contaminated wastewater treatment. In the biofilm samples, Se is dominantly as Se(0) despite Se K-edge XANES spectroscopy cannot easily distinguish between elemental Se and Se(-I)-bearing selenides. EXAFS spectra indicate that Se is located within aperiodic domains, markedly different to these known in monoclinic red selenium. However, Se can well occur within nanodivided domains related to monoclinic red Se, as this form was optically observed at the rim of some sludges. Aqueous selenate is then efficiently bioreduced, under sulfate reducing and methanogenic conditions.

  19. Selenium Speciation in Biofilms from Granular Sludge Bed Reactors Used for Wastewater Treatment

    SciTech Connect (OSTI)

    Hullenbusch, Eric van; Farges, Francois; Lenz, Markus; Lens, Piet; Brown, Gordon E. Jr.

    2007-02-02

    Se K-edge XAFS spectra were collected for various model compounds of Se as well as for 3 biofilm samples from bioreactors used for Se-contaminated wastewater treatment. In the biofilm samples, Se is dominantly as Se(0) despite Se K-edge XANES spectroscopy cannot easily distinguish between elemental Se and Se(-I)-bearing selenides. EXAFS spectra indicate that Se is located within aperiodic domains, markedly different to these known in monoclinc red selenium. However, Se can well occur within nanodivided domains related to monoclinic red Se, as this form was optically observed at the rim of some sludges. Aqueous selenate is then efficiently bioreduced, under sulfate reducing and methanogenic conditions.

  20. Bacterial Cellulose Composites Opportunities and Challenges | Department of

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Energy Bacterial Cellulose Composites Opportunities and Challenges Bacterial Cellulose Composites Opportunities and Challenges PDF icon Bacterial Cellulose Composites: Opportunities and Challenges - Leonard Fifield, Pacific Northwest National Laboratory More Documents & Publications Sustainable Nanomaterials Workshop Grand Challenges of Characterization & Modeling of Cellulose Nanomaterials Integrating Nanomaterial Applications in the Field of Sustainable Biomaterials

  1. Harnessing the Bacterial Power of Nanomagnets

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Harnessing the Bacterial Power of Nanomagnets Print Nanometer-size magnets have wide-ranging uses, from directed cancer therapy and drug delivery systems to magnetic recording media and transducers. Such applications require the production of nanoparticles with well-controlled size and tunable magnetic properties. The synthesis of such nanomagnets, however, often requires elevated temperatures and toxic solvents, resulting in high environmental and energy costs. Metal-reducing microorganisms

  2. Harnessing the Bacterial Power of Nanomagnets

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Harnessing the Bacterial Power of Nanomagnets Print Nanometer-size magnets have wide-ranging uses, from directed cancer therapy and drug delivery systems to magnetic recording media and transducers. Such applications require the production of nanoparticles with well-controlled size and tunable magnetic properties. The synthesis of such nanomagnets, however, often requires elevated temperatures and toxic solvents, resulting in high environmental and energy costs. Metal-reducing microorganisms

  3. Harnessing the Bacterial Power of Nanomagnets

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Harnessing the Bacterial Power of Nanomagnets Print Nanometer-size magnets have wide-ranging uses, from directed cancer therapy and drug delivery systems to magnetic recording media and transducers. Such applications require the production of nanoparticles with well-controlled size and tunable magnetic properties. The synthesis of such nanomagnets, however, often requires elevated temperatures and toxic solvents, resulting in high environmental and energy costs. Metal-reducing microorganisms

  4. Harnessing the Bacterial Power of Nanomagnets

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Harnessing the Bacterial Power of Nanomagnets Print Nanometer-size magnets have wide-ranging uses, from directed cancer therapy and drug delivery systems to magnetic recording media and transducers. Such applications require the production of nanoparticles with well-controlled size and tunable magnetic properties. The synthesis of such nanomagnets, however, often requires elevated temperatures and toxic solvents, resulting in high environmental and energy costs. Metal-reducing microorganisms

  5. Harnessing the Bacterial Power of Nanomagnets

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Harnessing the Bacterial Power of Nanomagnets Print Nanometer-size magnets have wide-ranging uses, from directed cancer therapy and drug delivery systems to magnetic recording media and transducers. Such applications require the production of nanoparticles with well-controlled size and tunable magnetic properties. The synthesis of such nanomagnets, however, often requires elevated temperatures and toxic solvents, resulting in high environmental and energy costs. Metal-reducing microorganisms

  6. Harnessing the Bacterial Power of Nanomagnets

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Harnessing the Bacterial Power of Nanomagnets Print Nanometer-size magnets have wide-ranging uses, from directed cancer therapy and drug delivery systems to magnetic recording media and transducers. Such applications require the production of nanoparticles with well-controlled size and tunable magnetic properties. The synthesis of such nanomagnets, however, often requires elevated temperatures and toxic solvents, resulting in high environmental and energy costs. Metal-reducing microorganisms

  7. Harnessing the Bacterial Power of Nanomagnets

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Harnessing the Bacterial Power of Nanomagnets Print Nanometer-size magnets have wide-ranging uses, from directed cancer therapy and drug delivery systems to magnetic recording media and transducers. Such applications require the production of nanoparticles with well-controlled size and tunable magnetic properties. The synthesis of such nanomagnets, however, often requires elevated temperatures and toxic solvents, resulting in high environmental and energy costs. Metal-reducing microorganisms

  8. Harnessing the Bacterial Power of Nanomagnets

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Harnessing the Bacterial Power of Nanomagnets Print Nanometer-size magnets have wide-ranging uses, from directed cancer therapy and drug delivery systems to magnetic recording media and transducers. Such applications require the production of nanoparticles with well-controlled size and tunable magnetic properties. The synthesis of such nanomagnets, however, often requires elevated temperatures and toxic solvents, resulting in high environmental and energy costs. Metal-reducing microorganisms

  9. Real time viability detection of bacterial spores

    DOE Patents [OSTI]

    Vanderberg, Laura A.; Herdendorf, Timothy J.; Obiso, Richard J.

    2003-07-29

    This invention relates to a process for detecting the presence of viable bacterial spores in a sample and to a spore detection system, the process including placing a sample in a germination medium for a period of time sufficient for commitment of any present viable bacterial spores to occur, mixing the sample with a solution of a lanthanide capable of forming a fluorescent complex with dipicolinic acid, and, measuring the sample for the presence of dipicolinic acid, and the system including a germination chamber having inlets from a sample chamber, a germinant chamber and a bleach chamber, the germination chamber further including an outlet through a filtering means, the outlet connected to a detection chamber, the detection chamber having an inlet from a fluorescence promoting metal chamber and the detection chamber including a spectral excitation source and a means of measuring emission spectra from a sample, the detection chamber further connected to a waste chamber. A germination reaction mixture useful for promoting commitment of any viable bacterial spores in a sample including a combination of L-alanine, L-asparagine and D-glucose is also described.

  10. ALSNews Vol. 312

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    2 Print Real-Time Chemical Imaging of Bacterial Biofilm Development Almost all bacteria can form biofilms--dynamic communities of cells enclosed in self-produced matrices of polymers. Coordinated collectively, these bacteria defend against antagonists, break down recalcitrant materials, and produce biofuels. Researchers from Berkeley Lab, Lawrence Livermore National Lab, and UC Berkeley have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial

  11. ALSNews Vol. 312

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    2 Print Real-Time Chemical Imaging of Bacterial Biofilm Development Almost all bacteria can form biofilms--dynamic communities of cells enclosed in self-produced matrices of polymers. Coordinated collectively, these bacteria defend against antagonists, break down recalcitrant materials, and produce biofuels. Researchers from Berkeley Lab, Lawrence Livermore National Lab, and UC Berkeley have developed a robust and label-free method to probe the chemical underpinnings of developing bacterial

  12. The Carboxysome and Other Bacterial Microcompartments

    SciTech Connect (OSTI)

    Kerfeld, Cheryl A.; Greenleaf, William B.; Kinney, James N.

    2010-06-23

    - Carboxysomes are part of the carbon concentrating mechanism in cyanobacteria and chemoautotrophs. - Carboxysomes are a subclass of bacterial microcompartments (BMCs); BMCs can encapsulate a range of metabolic processes. - Like some viral particles, the carboxysome can be modeled as an icosahedron-in its case, having 4,000-5,000 hexameric shell subunits and 12 surface pentamers to generate curvature. - The threefold axis of symmetry of the CsoS1D protein in carboxysomes forms a pore that can open and close, allowing for selective diffusion. - Genetic modules encoding BMC shell proteins and the enzymes that they encapsulate are horizontally transferable, suggesting they enable bacteria to adapt to diverse environments.

  13. Detoxification of organophosphate nerve agents by bacterial phosphotriesterase

    SciTech Connect (OSTI)

    Ghanem, Eman; Raushel, Frank M. . E-mail: raushel@tamu.edu

    2005-09-01

    Organophosphates have been widely used as insecticides and chemical warfare agents. The health risks associated with these agents have necessitated the need for better detoxification and bioremediation tools. Bacterial enzymes capable of hydrolyzing the lethal organophosphate nerve agents are of special interest. Phosphotriesterase (PTE) isolated from the soil bacteria Pseudomonas diminuta displays a significant rate enhancement and substrate promiscuity for the hydrolysis of organophosphate triesters. Directed evolution and rational redesign of the active site of PTE have led to the identification of new variants with enhanced catalytic efficiency and stereoselectivity toward the hydrolysis of organophosphate neurotoxins. PTE has been utilized to protect against organophosphate poisoning in vivo. Biotechnological applications of PTE for detection and decontamination of insecticides and chemical warfare agents are developing into useful tools. In this review, the catalytic properties and potential applications of this remarkable enzyme are discussed.

  14. ALSNews Vol. 312

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    2 Print Real-Time Chemical Imaging of Bacterial Biofilm Development Almost all bacteria ... Friday. A Web page showing the ring status in real time can be found at http:...

  15. ALSNews Vol. 312

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ALSNews Vol. 312 Print Real-Time Chemical Imaging of Bacterial Biofilm Development Almost ... Friday. A Web page showing the ring status in real time can be found at http:...

  16. Time-Resolved

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Ultrafast Spectroscopy of Warm Dense Matter Real-Time Chemical Imaging of Bacterial Biofilm Development Using Light to Control How X Rays Interact with Matter X-Ray Imaging of...

  17. Bioscience

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    on Disordered Ensembles Molecular Measurements of the Deep-Sea Oil Plume in the Gulf of Mexico Real-Time Chemical Imaging of Bacterial Biofilm Development Irradiation Effects on...

  18. ALSNews Vol. 312

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    to probe the chemical underpinnings of developing bacterial biofilms, coupling infrared (IR) rays from ALS Beamline 1.4.3 to the first open-channel microfluidic platform to...

  19. Metallization of bacterial cellulose for electrical and electronic device manufacture

    DOE Patents [OSTI]

    Evans, Barbara R. (Oak Ridge, TN) [Oak Ridge, TN; O'Neill, Hugh M. (Knoxville, TN) [Knoxville, TN; Jansen, Valerie Malyvanh (Memphis, TN) [Memphis, TN; Woodward, Jonathan (Knoxville, TN) [Knoxville, TN

    2010-09-28

    A method for the deposition of metals in bacterial cellulose and for the employment of the metallized bacterial cellulose in the construction of fuel cells and other electronic devices is disclosed. The method for impregnating bacterial cellulose with a metal comprises placing a bacterial cellulose matrix in a solution of a metal salt such that the metal salt is reduced to metallic form and the metal precipitates in or on the matrix. The method for the construction of a fuel cell comprises placing a hydrated bacterial cellulose support structure in a solution of a metal salt such that the metal precipitates in or on the support structure, inserting contact wires into two pieces of the metal impregnated support structure, placing the two pieces of metal impregnated support structure on opposite sides of a layer of hydrated bacterial cellulose, and dehydrating the three layer structure to create a fuel cell.

  20. Metallization of bacterial cellulose for electrical and electronic device manufacture

    DOE Patents [OSTI]

    Evans, Barbara R. (Oak Ridge, TN); O'Neill, Hugh M. (Knoxville, TN); Jansen, Valerie Malyvanh (Memphis, TN); Woodward, Jonathan (Knoxville, TN)

    2011-06-07

    A method for the deposition of metals in bacterial cellulose and for the employment of the metallized bacterial cellulose in the construction of fuel cells and other electronic devices is disclosed. The method for impregnating bacterial cellulose with a metal comprises placing a bacterial cellulose matrix in a solution of a metal salt such that the metal salt is reduced to metallic form and the metal precipitates in or on the matrix. The method for the construction of a fuel cell comprises placing a hydrated bacterial cellulose support structure in a solution of a metal salt such that the metal precipitates in or on the support structure, inserting contact wires into two pieces of the metal impregnated support structure, placing the two pieces of metal impregnated support structure on opposite sides of a layer of hydrated bacterial cellulose, and dehydrating the three layer structure to create a fuel cell.

  1. Metallization of bacterial cellulose for electrical and electronic device manufacture

    DOE Patents [OSTI]

    Evans, Barbara R.; O'Neill, Hugh M.; Jansen, Valerie Malyvanh; Woodward, Jonathan

    2006-01-17

    The employment of metallized bacterial cellulose in the construction of fuel cells and other electronic devices is disclosed. The fuel cell includes an electrolyte membrane comprising a membrane support structure comprising bacterial cellulose, an anode disposed on one side of the electrolyte membrane, and a cathode disposed on an opposite side of the electrolyte membrane. At least one of the anode and the cathode comprises an electrode support structure comprising bacterial cellulose, and a catalyst disposed in or on the electrode support structure.

  2. Bacterial Enzymes and Antibiotic Resistance- Oral Presentation

    SciTech Connect (OSTI)

    Maltz, Lauren

    2015-08-25

    By using protein crystallography and X-ray diffraction, structures of bacterial enzymes were solved to gain a better understanding of how enzymatic modification acts as an antibacterial resistance mechanism. Aminoglycoside phosphotransferases (APHs) are one of three aminoglycoside modifying enzymes that confer resistance to the aminoglycoside antibiotics via enzymatic modification, rendering many drugs obsolete. Specifically, the APH(2) family vary in their substrate specificities and also in their preference for the phosphate donor (ADP versus GDP). By solving the structures of members of the APH(2) family of enzymes, we can see how domain movements are important to their substrate specificity. Our structure of the ternary complex of APH(2)-IIIa with GDP and kanamycin, when compared to the known structures of APH(2)-IVa, reveals that there are real physical differences between these two enzymes, a structural finding that explains why the two enzymes differ in their preferences for certain aminoglycosides. Another important group of bacterial resistance enzymes are the Class D ?-lactamases. Oxacillinase carbapenemases (OXAs) are part of this enzyme class and have begun to confer resistance to last resort drugs, most notably carbapenems. Our structure of OXA-143 shows that the conformational flexibility of a conserved hydrophobic residue in the active site (Val130) serves to control the entry of a transient water molecule responsible for a key step in the enzymes mechanism. Our results provide insight into the structural mechanisms of these two different enzymes.

  3. The Fate of Marine Bacterial Exopolysaccharide in Natural Marine...

    Office of Scientific and Technical Information (OSTI)

    The Fate of Marine Bacterial Exopolysaccharide in Natural Marine Microbial Communities ... Country of Publication: United States Language: English Subject: 59 BASIC BIOLOGICAL ...

  4. Lessons learned from bacterial transport research at the South Oyster Site

    SciTech Connect (OSTI)

    Scheibe, T.; Hubbard, S.S.; Onstott, T.C.; DeFlaun, M.F.

    2011-04-01

    This paper provides a review of bacterial transport experiments conducted by a multi-investigator, multi-institution, multi-disciplinary team of researchers under the auspices of the U. S. Department of Energy (DOE). The experiments were conducted during the time period 1999-2001 at a field site near the town of Oyster, Virginia known as the South Oyster Site, and included four major experimental campaigns aimed at understanding and quantifying bacterial transport in the subsurface environment. Several key elements of the research are discussed here: (1) quantification of bacterial transport in physically, chemically and biologically heterogeneous aquifers, (2) evaluation of the efficacy of conventional colloid filtration theory, (3) scale effects in bacterial transport, (4) development of new methods for microbial enumeration and screening for low adhesion strains, (5) application of novel hydrogeophysical techniques for aquifer characterization, and (6) experiences regarding management of a large field research effort. Lessons learned are summarized in each of these areas. The body of literature resulting from South Oyster Site research has been widely cited and continues to influence research into the controls exerted by aquifer heterogeneity on reactive transport (including microbial transport). It also served as a model (and provided valuable experience) for subsequent and ongoing highly-instrumented field research efforts conducted by DOE-sponsored investigators.

  5. Phototrophic Biofilm Assembly in Microbial-Mat-Derived Unicyanobacterial Consortia: Model Systems for the Study of Autotroph-Heterotroph Interactions

    SciTech Connect (OSTI)

    Cole, Jessica K.; Hutchison, Janine R.; Renslow, Ryan S.; Kim, Young-Mo; Chrisler, William B.; Engelmann, Heather E.; Dohnalkova, Alice; Hu, Dehong; Metz, Thomas O.; Fredrickson, Jim K.; Lindemann, Stephen R.

    2014-04-07

    Though microbial autotroph-heterotroph interactions influence biogeochemical cycles on a global scale, the diversity and complexity of natural systems and their intractability to in situ environmental manipulation makes elucidation of the principles governing these interactions challenging. Examination of primary succession during phototrophic biofilm assembly provides a robust means by which to elucidate the dynamics of such interactions and determine their influence upon recruitment and maintenance of phylogenetic and functional diversity in microbial communities. We isolated and characterized two unicyanobacterial consortia from the Hot Lake phototrophic mat, quantifying the structural and community composition of their assembling biofilms. The same heterotrophs were retained in both consortia and included members of Alphaproteobacteria, Gammaproteobacteria, and Bacteroidetes, taxa frequently reported as consorts of microbial photoautotrophs. Cyanobacteria led biofilm assembly, eventually giving way to a late heterotrophic bloom. The consortial biofilms exhibited similar patterns of assembly, with the relative abundances of members of Bacteroidetes and Alphaproteobacteria increasing and members of Gammaproteobacteria decreasing as colonization progressed. Despite similar trends in assembly at higher taxa, the consortia exhibited substantial differences in community structure at the species level. These similar patterns of assembly with divergent community structures suggest that, while similar niches are created by the metabolism of the cyanobacteria, the resultant webs of autotroph-heterotroph and heterotroph-heterotroph interactions driving metabolic exchange are specific to each primary producer. Altogether, our data support these Hot Lake unicyanobacterial consortia as generalizable model systems whose simplicity and tractability permit the deciphering of community assembly principles relevant to natural microbial communities.

  6. Reconstruction of a Bacterial Genome from DNA Cassettes

    SciTech Connect (OSTI)

    Christopher Dupont; John Glass; Laura Sheahan; Shibu Yooseph; Lisa Zeigler Allen; Mathangi Thiagarajan; Andrew Allen; Robert Friedman; J. Craig Venter

    2011-12-31

    This basic research program comprised two major areas: (1) acquisition and analysis of marine microbial metagenomic data and development of genomic analysis tools for broad, external community use; (2) development of a minimal bacterial genome. Our Marine Metagenomic Diversity effort generated and analyzed shotgun sequencing data from microbial communities sampled from over 250 sites around the world. About 40% of the 26 Gbp of sequence data has been made publicly available to date with a complete release anticipated in six months. Our results and those mining the deposited data have revealed a vast diversity of genes coding for critical metabolic processes whose phylogenetic and geographic distributions will enable a deeper understanding of carbon and nutrient cycling, microbial ecology, and rapid rate evolutionary processes such as horizontal gene transfer by viruses and plasmids. A global assembly of the generated dataset resulted in a massive set (5Gbp) of genome fragments that provide context to the majority of the generated data that originated from uncultivated organisms. Our Synthetic Biology team has made significant progress towards the goal of synthesizing a minimal mycoplasma genome that will have all of the machinery for independent life. This project, once completed, will provide fundamentally new knowledge about requirements for microbial life and help to lay a basic research foundation for developing microbiological approaches to bioenergy.

  7. Associations between bacterial communities of house dust and infant gut

    SciTech Connect (OSTI)

    Konya, T.; Koster, B.; Maughan, H.; Escobar, M.; Azad, M.B.; Guttman, D.S.; Sears, M.R.; Becker, A.B.; Brook, J.R.; Takaro, T.K.; Kozyrskyj, A.L.; Scott, J.A.

    2014-05-01

    The human gut is host to a diverse and abundant community of bacteria that influence health and disease susceptibility. This community develops in infancy, and its composition is strongly influenced by environmental factors, notably perinatal anthropogenic exposures such as delivery mode (Cesarean vs. vaginal) and feeding method (breast vs. formula); however, the built environment as a possible source of exposure has not been considered. Here we report on a preliminary investigation of the associations between bacteria in house dust and the nascent fecal microbiota from 20 subjects from the Canadian Healthy Infant Longitudinal Development (CHILD) Study using high-throughput sequence analysis of portions of the 16S rRNA gene. Despite significant differences between the dust and fecal microbiota revealed by Nonmetric Multidimensional Scaling (NMDS) analysis, permutation analysis confirmed that 14 bacterial OTUs representing the classes Actinobacteria (3), Bacilli (3), Clostridia (6) and Gammaproteobacteria (2) co-occurred at a significantly higher frequency in matched duststool pairs than in randomly permuted pairs, indicating an association between these dust and stool communities. These associations could indicate a role for the indoor environment in shaping the nascent gut microbiota, but future studies will be needed to confirm that our findings do not solely reflect a reverse pathway. Although pet ownership was strongly associated with the presence of certain genera in the dust for dogs (Agrococcus, Carnobacterium, Exiguobacterium, Herbaspirillum, Leifsonia and Neisseria) and cats (Escherichia), no clear patterns were observed in the NMDS-resolved stool community profiles as a function of pet ownership.

  8. Identification and characterization of a bacterial hydrosulphide ion

    Office of Scientific and Technical Information (OSTI)

    channel (Journal Article) | SciTech Connect SciTech Connect Search Results Journal Article: Identification and characterization of a bacterial hydrosulphide ion channel Citation Details In-Document Search Title: Identification and characterization of a bacterial hydrosulphide ion channel The hydrosulphide ion (HS{sup -}) and its undissociated form, hydrogen sulphide (H{sub 2}S), which are believed to have been critical to the origin of life on Earth, remain important in physiology and

  9. Insights from twenty years of bacterial genome sequencing

    SciTech Connect (OSTI)

    Land, Miriam L; Hauser, Loren John; Jun, Se Ran; Nookaew, Intawat; Leuze, Michael Rex; Ahn, Tae-Hyuk; Karpinets, Tatiana V; Lund, Ole; Kora, Guruprasad H; Wassenaar, Trudy; Poudel, Suresh; Ussery, David W

    2015-01-01

    Since the first two complete bacterial genome sequences were published in 1995, the science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is possible to completely sequence a bacterial genome in a few hours and identify some types of methylation sites along the genome as well. Sequencing of bacterial genome sequences is now a standard procedure, and the information from tens of thousands of bacterial genomes has had a major impact on our views of the bacterial world. In this review, we explore a series of questions to highlight some insights that comparative genomics has produced. To date, there are genome sequences available from 50 different bacterial phyla and 11 different archaeal phyla. However, the distribution is quite skewed towards a few phyla that contain model organisms. But the breadth is continuing to improve, with projects dedicated to filling in less characterized taxonomic groups. The clustered regularly interspaced short palindromic repeats (CRISPR)-Cas system provides bacteria with immunity against viruses, which outnumber bacteria by tenfold. How fast can we go? Second-generation sequencing has produced a large number of draft genomes (close to 90 % of bacterial genomes in GenBank are currently not complete); third-generation sequencing can potentially produce a finished genome in a few hours, and at the same time provide methlylation sites along the entire chromosome. The diversity of bacterial communities is extensive as is evident from the genome sequences available from 50 different bacterial phyla and 11 different archaeal phyla. Genome sequencing can help in classifying an organism, and in the case where multiple genomes of the same species are available, it is possible to calculate the pan- and core genomes; comparison of more than 2000 Escherichia coli genomes finds an E. coli core genome of about 3100 gene families and a total of about 89,000 different gene families. Why do we care about bacterial genome sequencing? There are many practical applications, such as genome-scale metabolic modeling, biosurveillance, bioforensics, and infectious disease epidemiology. In the near future, high-throughput sequencing of patient metagenomic samples could revolutionize medicine in terms of speed and accuracy of finding pathogens and knowing how to treat them.

  10. DEVELOPMENT OF AN ENVIRONMENTALLY BENIGN MICROBIAL INHIBITOR TO CONTROL INTERNAL PIPELINE CORROSION

    SciTech Connect (OSTI)

    Bill W. Bogan; Brigid M. Lamb; John J. Kilbane II

    2004-10-30

    The overall program objective is to develop and evaluate environmentally benign agents or products that are effective in the prevention, inhibition, and mitigation of microbially influenced corrosion (MIC) in the internal surfaces of metallic natural gas pipelines. The goal is to develop one or more environmentally benign (a.k.a. ''green'') products that can be applied to maintain the structure and dependability of the natural gas infrastructure. Previous testing indicated that the growth, and the metal corrosion caused by pure cultures of sulfate reducing bacteria were inhibited by hexane extracts of some pepper plants. This quarter tests were performed to determine if chemical compounds other than pepper extracts could inhibit the growth of corrosion-associated microbes and to determine if pepper extracts and other compounds can inhibit corrosion when mature biofilms are present. Several chemical compounds were shown to be capable of inhibiting the growth of corrosion-associated microorganisms, and all of these compounds limited the amount of corrosion caused by mature biofilms to a similar extent. It is difficult to control corrosion caused by mature biofilms, but any compound that disrupts the metabolism of any of the major microbial groups present in corrosion-associated biofilms shows promise in limiting the amount/rate of corrosion.

  11. Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome

    SciTech Connect (OSTI)

    Hodkinson, Brendan P; Gottel, Neil R; Schadt, Christopher Warren; Lutzoni, Francois

    2011-01-01

    Although common knowledge dictates that the lichen thallus is formed solely by a fungus (mycobiont) that develops a symbiotic relationship with an alga and/or cyanobacterium (photobiont), the non-photoautotrophic bacteria found in lichen microbiomes are increasingly regarded as integral components of lichen thalli. For this study, comparative analyses were conducted on lichen-associated bacterial communities to test for effects of photobiont-types (i.e. green algal vs. cyanobacterial), mycobiont-types and large-scale spatial distances (from tropical to arctic latitudes). Amplicons of the 16S (SSU) rRNA gene were examined using both Sanger sequencing of cloned fragments and barcoded pyrosequencing. Rhizobiales is typically the most abundant and taxonomically diverse order in lichen microbiomes; however, overall bacterial diversity in lichens is shown to be much higher than previously reported. Members of Acidobacteriaceae, Acetobacteraceae, Brucellaceae and sequence group LAR1 are the most commonly found groups across the phylogenetically and geographically broad array of lichens examined here. Major bacterial community trends are significantly correlated with differences in large-scale geography, photobiont-type and mycobiont-type. The lichen as a microcosm represents a structured, unique microbial habitat with greater ecological complexity and bacterial diversity than previously appreciated and can serve as a model system for studying larger ecological and evolutionary principles.

  12. Differentiation of Microbial Species and Strains in Coculture Biofilms by Multivariate Analysis of Laser Desorption Postionization Mass Spectra

    SciTech Connect (OSTI)

    University of Illinois at Chicago; Montana State University; Bhardwaj, Chhavi; Cui, Yang; Hofstetter, Theresa; Liu, Suet Yi; Bernstein, Hans C.; Carlson, Ross P.; Ahmed, Musahid; Hanley, Luke

    2013-04-01

    7.87 to 10.5 eV vacuum ultraviolet (VUV) photon energies were used in laser desorption postionization mass spectrometry (LDPI-MS) to analyze biofilms comprised of binary cultures of interacting microorganisms. The effect of photon energy was examined using both tunable synchrotron and laser sources of VUV radiation. Principal components analysis (PCA) was applied to the MS data to differentiate species in Escherichia coli-Saccharomyces cerevisiae coculture biofilms. PCA of LDPI-MS also differentiated individual E. coli strains in a biofilm comprised of two interacting gene deletion strains, even though these strains differed from the wild type K-12 strain by no more than four gene deletions each out of approximately 2000 genes. PCA treatment of 7.87 eV LDPI-MS data separated the E. coli strains into three distinct groups two ?pure? groups and a mixed region. Furthermore, the ?pure? regions of the E. coli cocultures showed greater variance by PCA when analyzed by 7.87 eV photon energies than by 10.5 eV radiation. Comparison of the 7.87 and 10.5 eV data is consistent with the expectation that the lower photon energy selects a subset of low ionization energy analytes while 10.5 eV is more inclusive, detecting a wider range of analytes. These two VUV photon energies therefore give different spreads via PCA and their respective use in LDPI-MS constitute an additional experimental parameter to differentiate strains and species.

  13. Natural bacterial communities serve as quantitative geochemical biosensors

    SciTech Connect (OSTI)

    Smith, Mark B.; Rocha, Andrea M.; Smillie, Chris S.; Olesen, Scott W.; Paradis, Charles; Wu, Liyou; Campbell, James H.; Fortney, Julian L.; Mehlhorn, Tonia L.; Lowe, Kenneth A.; Earles, Jennifer E.; Phillips, Jana; Techtmann, Steve M.; Joyner, Dominique C.; Elias, Dwayne A.; Bailey, Kathryn L.; Hurt, Richard A.; Preheim, Sarah P.; Sanders, Matthew C.; Yang, Joy; Mueller, Marcella A.; Brooks, Scott; Watson, David B.; Zhang, Ping; He, Zhili; Dubinsky, Eric A.; Adams, Paul D.; Arkin, Adam P.; Fields, Matthew W.; Zhou, Jizhong; Alm, Eric J.; Hazen, Terry C.

    2015-05-12

    Biological sensors can be engineered to measure a wide range of environmental conditions. Here we show that statistical analysis of DNA from natural microbial communities can be used to accurately identify environmental contaminants, including uranium and nitrate at a nuclear waste site. In addition to contamination, sequence data from the 16S rRNA gene alone can quantitatively predict a rich catalogue of 26 geochemical features collected from 93 wells with highly differing geochemistry characteristics. We extend this approach to identify sites contaminated with hydrocarbons from the Deepwater Horizon oil spill, finding that altered bacterial communities encode a memory of prior contamination, even after the contaminants themselves have been fully degraded. We show that the bacterial strains that are most useful for detecting oil and uranium are known to interact with these substrates, indicating that this statistical approach uncovers ecologically meaningful interactions consistent with previous experimental observations. Future efforts should focus on evaluating the geographical generalizability of these associations. Taken as a whole, these results indicate that ubiquitous, natural bacterial communities can be used as in situ environmental sensors that respond to and capture perturbations caused by human impacts. These in situ biosensors rely on environmental selection rather than directed engineering, and so this approach could be rapidly deployed and scaled as sequencing technology continues to become faster, simpler, and less expensive. Here we show that DNA from natural bacterial communities can be used as a quantitative biosensor to accurately distinguish unpolluted sites from those contaminated with uranium, nitrate, or oil. These results indicate that bacterial communities can be used as environmental sensors that respond to and capture perturbations caused by human impacts.

  14. Natural bacterial communities serve as quantitative geochemical biosensors

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Smith, Mark B.; Rocha, Andrea M.; Smillie, Chris S.; Olesen, Scott W.; Paradis, Charles; Wu, Liyou; Campbell, James H.; Fortney, Julian L.; Mehlhorn, Tonia L.; Lowe, Kenneth A.; et al

    2015-05-12

    Biological sensors can be engineered to measure a wide range of environmental conditions. Here we show that statistical analysis of DNA from natural microbial communities can be used to accurately identify environmental contaminants, including uranium and nitrate at a nuclear waste site. In addition to contamination, sequence data from the 16S rRNA gene alone can quantitatively predict a rich catalogue of 26 geochemical features collected from 93 wells with highly differing geochemistry characteristics. We extend this approach to identify sites contaminated with hydrocarbons from the Deepwater Horizon oil spill, finding that altered bacterial communities encode a memory of prior contamination,more » even after the contaminants themselves have been fully degraded. We show that the bacterial strains that are most useful for detecting oil and uranium are known to interact with these substrates, indicating that this statistical approach uncovers ecologically meaningful interactions consistent with previous experimental observations. Future efforts should focus on evaluating the geographical generalizability of these associations. Taken as a whole, these results indicate that ubiquitous, natural bacterial communities can be used as in situ environmental sensors that respond to and capture perturbations caused by human impacts. These in situ biosensors rely on environmental selection rather than directed engineering, and so this approach could be rapidly deployed and scaled as sequencing technology continues to become faster, simpler, and less expensive. Here we show that DNA from natural bacterial communities can be used as a quantitative biosensor to accurately distinguish unpolluted sites from those contaminated with uranium, nitrate, or oil. These results indicate that bacterial communities can be used as environmental sensors that respond to and capture perturbations caused by human impacts.« less

  15. DOE-Funded Research on Bacterial Enzyme Could Lead to Cheaper...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    DOE-Funded Research on Bacterial Enzyme Could Lead to Cheaper Biofuel DOE-Funded Research on Bacterial Enzyme Could Lead to Cheaper Biofuel May 28, 2014 - 12:24pm Addthis A ...

  16. EERE Success Story-DOE-Funded Research on Bacterial Enzyme Could...

    Office of Environmental Management (EM)

    DOE-Funded Research on Bacterial Enzyme Could Lead to Cheaper Biofuel EERE Success Story-DOE-Funded Research on Bacterial Enzyme Could Lead to Cheaper Biofuel May 28, 2014 - ...

  17. Argonne OutLoud: Invisible Influence: A Bacterial Guide to Your...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Invisible Influence: A Bacterial Guide to Your Health (Dec. 11, 2014) Share Topic Community Outreach Environment Biology Environmental biology Metagenomics...

  18. Community dynamics and glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass

    SciTech Connect (OSTI)

    Gladden, J.M.; Allgaier, M.; Miller, C.S.; Hazen, T.C.; VanderGheynst, J.S.; Hugenholtz, P.; Simmons, B.A.; Singer, S.W.

    2011-05-01

    Industrial-scale biofuel production requires robust enzymatic cocktails to produce fermentable sugars from lignocellulosic biomass. Thermophilic bacterial consortia are a potential source of cellulases and hemicellulases adapted to harsher reaction conditions than commercial fungal enzymes. Compost-derived microbial consortia were adapted to switchgrass at 60 C to develop thermophilic biomass-degrading consortia for detailed studies. Microbial community analysis using small-subunit rRNA gene amplicon pyrosequencing and short-read metagenomic sequencing demonstrated that thermophilic adaptation to switchgrass resulted in low-diversity bacterial consortia with a high abundance of bacteria related to thermophilic paenibacilli, Rhodothermus marinus, and Thermus thermophilus. At lower abundance, thermophilic Chloroflexi and an uncultivated lineage of the Gemmatimonadetes phylum were observed. Supernatants isolated from these consortia had high levels of xylanase and endoglucanase activities. Compared to commercial enzyme preparations, the endoglucanase enzymes had a higher thermotolerance and were more stable in the presence of 1-ethyl-3-methylimidazolium acetate ([C2mim][OAc]), an ionic liquid used for biomass pretreatment. The supernatants were used to saccharify [C2mim][OAc]-pretreated switchgrass at elevated temperatures (up to 80 C), demonstrating that these consortia are an excellent source of enzymes for the development of enzymatic cocktails tailored to more extreme reaction conditions.

  19. A taxonomy of bacterial microcompartment loci constructed by a novel scoring method

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Axen, Seth D.; Erbilgin, Onur; Kerfeld, Cheryl A.; Tanaka, Mark M.

    2014-10-23

    Bacterial microcompartments (BMCs) are proteinaceous organelles involved in both autotrophic and heterotrophic metabolism. All BMCs share homologous shell proteins but differ in their complement of enzymes; these are typically encoded adjacent to shell protein genes in genetic loci, or operons. To enable the identification and prediction of functional (sub)types of BMCs, we developed LoClass, an algorithm that finds putative BMC loci and inventories, weights, and compares their constituent pfam domains to construct a locus similarity network and predict locus (sub)types. In addition to using LoClass to analyze sequences in the Non-redundant Protein Database, we compared predicted BMC loci found inmore » seven candidate bacterial phyla (six from single-cell genomic studies) to the LoClass taxonomy. Together, these analyses resulted in the identification of 23 different types of BMCs encoded in 30 distinct locus (sub)types found in 23 bacterial phyla. These include the two carboxysome types and a divergent set of metabolosomes, BMCs that share a common catalytic core and process distinct substrates via specific signature enzymes. Furthermore, many Candidate BMCs were found that lack one or more core metabolosome components, including one that is predicted to represent an entirely new paradigm for BMC-associated metabolism, joining the carboxysome and metabolosome. By placing these results in a phylogenetic context, we provide a framework for understanding the horizontal transfer of these loci, a starting point for studies aimed at understanding the evolution of BMCs. This comprehensive taxonomy of BMC loci, based on their constituent protein domains, foregrounds the functional diversity of BMCs and provides a reference for interpreting the role of BMC gene clusters encoded in isolate, single cell, and metagenomic data. Many loci encode ancillary functions such as transporters or genes for cofactor assembly; this expanded vocabulary of BMC-related functions should be useful for design of genetic modules for introducing BMCs in bioengineering applications.« less

  20. A taxonomy of bacterial microcompartment loci constructed by a novel scoring method

    SciTech Connect (OSTI)

    Axen, Seth D.; Erbilgin, Onur; Kerfeld, Cheryl A.; Tanaka, Mark M.

    2014-10-23

    Bacterial microcompartments (BMCs) are proteinaceous organelles involved in both autotrophic and heterotrophic metabolism. All BMCs share homologous shell proteins but differ in their complement of enzymes; these are typically encoded adjacent to shell protein genes in genetic loci, or operons. To enable the identification and prediction of functional (sub)types of BMCs, we developed LoClass, an algorithm that finds putative BMC loci and inventories, weights, and compares their constituent pfam domains to construct a locus similarity network and predict locus (sub)types. In addition to using LoClass to analyze sequences in the Non-redundant Protein Database, we compared predicted BMC loci found in seven candidate bacterial phyla (six from single-cell genomic studies) to the LoClass taxonomy. Together, these analyses resulted in the identification of 23 different types of BMCs encoded in 30 distinct locus (sub)types found in 23 bacterial phyla. These include the two carboxysome types and a divergent set of metabolosomes, BMCs that share a common catalytic core and process distinct substrates via specific signature enzymes. Furthermore, many Candidate BMCs were found that lack one or more core metabolosome components, including one that is predicted to represent an entirely new paradigm for BMC-associated metabolism, joining the carboxysome and metabolosome. By placing these results in a phylogenetic context, we provide a framework for understanding the horizontal transfer of these loci, a starting point for studies aimed at understanding the evolution of BMCs. This comprehensive taxonomy of BMC loci, based on their constituent protein domains, foregrounds the functional diversity of BMCs and provides a reference for interpreting the role of BMC gene clusters encoded in isolate, single cell, and metagenomic data. Many loci encode ancillary functions such as transporters or genes for cofactor assembly; this expanded vocabulary of BMC-related functions should be useful for design of genetic modules for introducing BMCs in bioengineering applications.

  1. Development and Integration of Genome-Enabled Techniques to Track and Predict the Cycling of Carbon in Model Microbial Communities

    SciTech Connect (OSTI)

    Banfield, Jillian

    2014-11-26

    The primary objective of this project was to establish widely applicable, high-throughput omics methods for tracking carbon flow in microbial communities at a strain-resolved molecular level. We developed and applied these methods to study a well-established microbial community model system with a long history of omics innovation: chemoautotrophic biofilms grown in an acid mine drainage (AMD) environment. The methods are now being transitioned (in a new project) to study soil. Using metagenomics, stable-isotope proteomics, stable-isotope metabolomics, transcriptomics, and microscopy, we tracked carbon flow during initial biofilm growth involving CO2 fixation, through the maturing biofilm community consisting of multiple trophic levels, and during an anaerobic degradative phase after biofilms sink. This work included explicit consideration of the often overlooked roles of archaea and microbial eukaryotes (fungi) in carbon turnover. We also analyzed where the eosystem begins to fail in response to thermal perturbation, and how perturbation propagates through a carbon cycle. We investigated the form of strain variation in microbial communities, the importance of strain variants, and the rate and form of strain evolution. Overall, the project generated an array of new, integrated omics approaches and provided unprecedented insight into the functioning of a natural ecosystem. This project supported graduate training for five Ph.D. students and three post doctoral fellows and contributed directly to at least 26 publications (two in Science).

  2. Expanded Intermediate-State Structure of a Bacterial Mechanosensitive

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Channel Expanded Intermediate-State Structure of a Bacterial Mechanosensitive Channel Human and other animals rely on the senses of touch and hearing to perceive mechanical stimuli, a process known as mechanosensation. Bacteria also have the ability to sense mechanical forces through mechanosensitive channels located in their plasma membrane. These channels open and close in response to membrane tension and serve as "pressure relief valves" that protect bacteria from bursting due

  3. Method for construction of bacterial strains with increased succinic acid production

    DOE Patents [OSTI]

    Donnelly, Mark I. (Warrenville, IL); Sanville-Millard, Cynthia (Plainfield, IL); Chatterjee, Ranjini (Park Ridge, IL)

    2000-01-01

    A fermentation process for producing succinic acid is provided comprising selecting a bacterial strain that does not produce succinic acid in high yield, disrupting the normal regulation of sugar metabolism of said bacterial strain, and combining the mutant bacterial strain and selected sugar in anaerobic conditions to facilitate production of succinic acid. Also provided is a method for changing low yield succinic acid producing bacteria to high yield succinic acid producing bacteria comprising selecting a bacterial strain having a phosphotransferase system and altering the phosphotransferase system so as to allow the bacterial strain to simultaneously metabolize different sugars.

  4. Convergent bacterial microbiotas in the fungal agricultural systems of insects

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Aylward, Frank O.; Suen, Garret; Biedermann, Peter H. W.; Adams, Aaron S.; Scott, Jarrod J.; Malfatti, Stephanie A.; Glavina del Rio, Tijana; Tringe, Susannah G.; Poulsen, Michael; Raffa, Kenneth F.; et al

    2014-11-18

    The ability to cultivate food is an innovation that has produced some of the most successful ecological strategies on the planet. Although most well recognized in humans, where agriculture represents a defining feature of civilization, species of ants, beetles, and termites have also independently evolved symbioses with fungi that they cultivate for food. Despite occurring across divergent insect and fungal lineages, the fungivorous niches of these insects are remarkably similar, indicating convergent evolution toward this successful ecological strategy. Here, we characterize the microbiota of ants, beetles, and termites engaged in nutritional symbioses with fungi to define the bacterial groups associatedmore » with these prominent herbivores and forest pests. Using culture-independent techniques and the in silico reconstruction of 37 composite genomes of dominant community members, we demonstrate that different insect-fungal symbioses that collectively shape ecosystems worldwide have highly similar bacterial microbiotas comprised primarily of the genera Enterobacter, Rahnella, and Pseudomonas. Although these symbioses span three orders of insects and two phyla of fungi, we show that they are associated with bacteria sharing high whole-genome nucleotide identity. Due to the fine-scale correspondence of the bacterial microbiotas of insects engaged in fungal symbioses, our findings indicate that this represents an example of convergence of entire host-microbe complexes.« less

  5. Convergent bacterial microbiotas in the fungal agricultural systems of insects

    SciTech Connect (OSTI)

    Aylward, Frank O.; Suen, Garret; Biedermann, Peter H. W.; Adams, Aaron S.; Scott, Jarrod J.; Malfatti, Stephanie A.; Glavina del Rio, Tijana; Tringe, Susannah G.; Poulsen, Michael; Raffa, Kenneth F.; Klepzig, Kier D.; Currie, Cameron R.

    2014-11-18

    The ability to cultivate food is an innovation that has produced some of the most successful ecological strategies on the planet. Although most well recognized in humans, where agriculture represents a defining feature of civilization, species of ants, beetles, and termites have also independently evolved symbioses with fungi that they cultivate for food. Despite occurring across divergent insect and fungal lineages, the fungivorous niches of these insects are remarkably similar, indicating convergent evolution toward this successful ecological strategy. Here, we characterize the microbiota of ants, beetles, and termites engaged in nutritional symbioses with fungi to define the bacterial groups associated with these prominent herbivores and forest pests. Using culture-independent techniques and the in silico reconstruction of 37 composite genomes of dominant community members, we demonstrate that different insect-fungal symbioses that collectively shape ecosystems worldwide have highly similar bacterial microbiotas comprised primarily of the genera Enterobacter, Rahnella, and Pseudomonas. Although these symbioses span three orders of insects and two phyla of fungi, we show that they are associated with bacteria sharing high whole-genome nucleotide identity. Due to the fine-scale correspondence of the bacterial microbiotas of insects engaged in fungal symbioses, our findings indicate that this represents an example of convergence of entire host-microbe complexes.

  6. Progressive structural changes of Avicel, bleached softwood, and bacterial cellulose during enzymatic hydrolysis

    SciTech Connect (OSTI)

    Kafle, Kabindra; Shin, Heenae; Lee, Christopher M.; Park, Sunkyu; Kim, Seong H.

    2015-10-14

    A comprehensive picture of structural changes of cellulosic biomass during enzymatic hydrolysis is essential for a better understanding of enzymatic actions and development of more efficient enzymes. In this study, a suite of analytical techniques including sum frequency generation (SFG) spectroscopy, infrared (IR) spectroscopy, x-ray diffraction (XRD), and x-ray photoelectron spectroscopy (XPS) were employed for lignin-free model biomass samplesAvicel, bleached softwood, and bacterial celluloseto find correlations between the decrease in hydrolysis rate over time and the structural or chemical changes of biomass during the hydrolysis reaction. The results showed that the decrease in hydrolysis rate over time appears to correlate with the irreversible deposition of non-cellulosic species (either reaction side products or denatured enzymes, or both) on the cellulosic substrate surface. The crystallinity, degree of polymerization, and meso-scale packing of cellulose do not seem to positively correlate with the decrease in hydrolysis rate observed for all three substrates tested in this study. Moreover, it was also found that the cellulose I? component of the bacterial cellulose is preferentially hydrolyzed by the enzyme than the cellulose I? component.

  7. A novel cofactor-binding mode in bacterial IMP dehydrogenases explains inhibitor selectivity

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Makowska-Grzyska, Magdalena; Kim, Youngchang; Maltseva, Natalia; Osipiuk, Jerzy; Gu, Minyi; Zhang, Minjia; Mandapati, Kavitha; Gollapalli, Deviprasad R.; Gorla, Suresh Kumar; Hedstrom, Lizbeth; et al

    2015-01-09

    The steadily rising frequency of emerging diseases and antibiotic resistance creates an urgent need for new drugs and targets. Inosine 5'-monophosphate dehydrogenase (IMP dehydrogenase or IMPDH) is a promising target for the development of new antimicrobial agents. IMPDH catalyzes the oxidation of IMP to XMP with the concomitant reduction of NAD+, which is the pivotal step in the biosynthesis of guanine nucleotides. Potent inhibitors of bacterial IMPDHs have been identified that bind in a structurally distinct pocket that is absent in eukaryotic IMPDHs. The physiological role of this pocket was not understood. Here, we report the structures of complexes withmore » different classes of inhibitors of Bacillus anthracis, Campylobacter jejuni, and Clostridium perfringens IMPDHs. These structures in combination with inhibition studies provide important insights into the interactions that modulate selectivity and potency. We also present two structures of the Vibrio cholerae IMPDH in complex with IMP/NAD+ and XMP/NAD+. In both structures, the cofactor assumes a dramatically different conformation than reported previously for eukaryotic IMPDHs and other dehydrogenases, with the major change observed for the position of the NAD+ adenosine moiety. More importantly, this new NAD+-binding site involves the same pocket that is utilized by the inhibitors. Thus, the bacterial IMPDH-specific NAD+-binding mode helps to rationalize the conformation adopted by several classes of prokaryotic IMPDH inhibitors. As a result, these findings offer a potential strategy for further ligand optimization.« less

  8. Ex Situ Formation of Metal Selenide Quantum Dots Using Bacterially Derived Selenide Precursors

    SciTech Connect (OSTI)

    Fellowes, Jonathan W.; Pattrick, Richard; Lloyd, Jon; Charnock, John M.; Coker, Victoria S.; Mosselmans, JFW; Weng, Tsu-Chien; Pearce, Carolyn I.

    2013-04-12

    Luminescent quantum dots were synthesized using bacterially derived selenide (SeII-) as the precursor. Biogenic SeII- was produced by the reduction of Se-IV by Veillonella atypica and compared directly against borohydride-reduced Se-IV for the production of glutathione-stabilized CdSe and beta-mercaptoethanol-stabilized ZnSe nanoparticles by aqueous synthesis. Biological SeII- formed smaller, narrower size distributed QDs under the same conditions. The growth kinetics of biologically sourced CdSe phases were slower. The proteins isolated from filter sterilized biogenic SeII- included a methylmalonyl-CoA decarboxylase previously characterized in the closely related Veillonella parvula. XAS analysis of the glutathione-capped CdSe at the S K-edge suggested that sulfur from the glutathione was structurally incorporated within the CdSe. A novel synchrotron based XAS technique was also developed to follow the nucleation of biological and inorganic selenide phases, and showed that biogenic SeII- is more stable and more resistant to beam-induced oxidative damage than its inorganic counterpart. The bacterial production of quantum dot precursors offers an alternative, 'green' synthesis technique that negates the requirement of expensive, toxic chemicals and suggests a possible link to the exploitation of selenium contaminated waste streams.

  9. Progressive structural changes of Avicel, bleached softwood, and bacterial cellulose during enzymatic hydrolysis

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Kafle, Kabindra; Shin, Heenae; Lee, Christopher M.; Park, Sunkyu; Kim, Seong H.

    2015-10-14

    A comprehensive picture of structural changes of cellulosic biomass during enzymatic hydrolysis is essential for a better understanding of enzymatic actions and development of more efficient enzymes. In this study, a suite of analytical techniques including sum frequency generation (SFG) spectroscopy, infrared (IR) spectroscopy, x-ray diffraction (XRD), and x-ray photoelectron spectroscopy (XPS) were employed for lignin-free model biomass samples—Avicel, bleached softwood, and bacterial cellulose—to find correlations between the decrease in hydrolysis rate over time and the structural or chemical changes of biomass during the hydrolysis reaction. The results showed that the decrease in hydrolysis rate over time appears to correlatemore » with the irreversible deposition of non-cellulosic species (either reaction side products or denatured enzymes, or both) on the cellulosic substrate surface. The crystallinity, degree of polymerization, and meso-scale packing of cellulose do not seem to positively correlate with the decrease in hydrolysis rate observed for all three substrates tested in this study. Moreover, it was also found that the cellulose Iα component of the bacterial cellulose is preferentially hydrolyzed by the enzyme than the cellulose Iβ component.« less

  10. Production of extremophilic bacterial cellulase enzymes in aspergillus niger.

    SciTech Connect (OSTI)

    Gladden, John Michael

    2013-09-01

    Enzymes can be used to catalyze a myriad of chemical reactions and are a cornerstone in the biotechnology industry. Enzymes have a wide range of uses, ranging from medicine with the production of pharmaceuticals to energy were they are applied to biofuel production. However, it is difficult to produce large quantities of enzymes, especially if they are non-native to the production host. Fortunately, filamentous fungi, such as Aspergillus niger, are broadly used in industry and show great potential for use a heterologous enzyme production hosts. Here, we present work outlining an effort to engineer A. niger to produce thermophilic bacterial cellulases relevant to lignocellulosic biofuel production.

  11. Argonne OutLoud: Invisible Influence: A Bacterial Guide to Your Health

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    (Dec. 11, 2014) | Argonne National Laboratory Invisible Influence: A Bacterial Guide to Your Health (Dec. 11, 2014) Share Topic Community Outreach Environment Biology Environmental biology Metagenomics

  12. Photo Gallery: Argonne OutLoud: "Invisible Influence: A Bacterial Guide to

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Your Health" | Argonne National Laboratory Photo Gallery: Argonne OutLoud: "Invisible Influence: A Bacterial Guide to Your Health" Argonne OutLoud Invisible Influence: A Bacterial Guide to Your Health 1 of 10 Argonne OutLoud Invisible Influence: A Bacterial Guide to Your Health Members of the public attend "Invisible Influence: A Bacterial Guide to Your Health," a Dec. 11, 2014 lecture in Argonne's public lecture series by Argonne microbiologist Jack Gilbert. In

  13. One-pot refolding of core histones from bacterial inclusion bodies...

    Office of Scientific and Technical Information (OSTI)

    SciTech Connect Search Results Journal Article: One-pot refolding of core histones from bacterial inclusion bodies allows rapid reconstitution of histone octamer Citation Details ...

  14. A novel cofactor-binding mode in bacterial IMP dehydrogenases explains inhibitor selectivity

    SciTech Connect (OSTI)

    Makowska-Grzyska, Magdalena; Kim, Youngchang; Maltseva, Natalia; Osipiuk, Jerzy; Gu, Minyi; Zhang, Minjia; Mandapati, Kavitha; Gollapalli, Deviprasad R.; Gorla, Suresh Kumar; Hedstrom, Lizbeth; Joachimiak, Andrzej

    2015-01-09

    The steadily rising frequency of emerging diseases and antibiotic resistance creates an urgent need for new drugs and targets. Inosine 5'-monophosphate dehydrogenase (IMP dehydrogenase or IMPDH) is a promising target for the development of new antimicrobial agents. IMPDH catalyzes the oxidation of IMP to XMP with the concomitant reduction of NAD+, which is the pivotal step in the biosynthesis of guanine nucleotides. Potent inhibitors of bacterial IMPDHs have been identified that bind in a structurally distinct pocket that is absent in eukaryotic IMPDHs. The physiological role of this pocket was not understood. Here, we report the structures of complexes with different classes of inhibitors of Bacillus anthracis, Campylobacter jejuni, and Clostridium perfringens IMPDHs. These structures in combination with inhibition studies provide important insights into the interactions that modulate selectivity and potency. We also present two structures of the Vibrio cholerae IMPDH in complex with IMP/NAD+ and XMP/NAD+. In both structures, the cofactor assumes a dramatically different conformation than reported previously for eukaryotic IMPDHs and other dehydrogenases, with the major change observed for the position of the NAD+ adenosine moiety. More importantly, this new NAD+-binding site involves the same pocket that is utilized by the inhibitors. Thus, the bacterial IMPDH-specific NAD+-binding mode helps to rationalize the conformation adopted by several classes of prokaryotic IMPDH inhibitors. As a result, these findings offer a potential strategy for further ligand optimization.

  15. Effect of Divalent Cation Removal on the Structure of Gram-Negative Bacterial Outer Membrane Models

    SciTech Connect (OSTI)

    Clifton, Luke A.; Skoda, Maximilian W. A.; Le Brun, Anton P.; Ciesielski, Filip; Kuzmenko, Ivan; Holt, Stephen A.; Lakey, Jeremy H.

    2014-12-09

    The Gram-negative bacterial outer membrane (GNB-OM) is asymmetric in its lipid composition with a phospholipid-rich inner leaflet and an outer leaflet predominantly composed of lipopolysaccharides (LPS). LPS are polyanionic molecules, with numerous phosphate groups present in the lipid A and core oligosaccharide regions. The repulsive forces due to accumulation of the negative charges are screened and bridged by the divalent cations (Mg2+ and Ca2+) that are known to be crucial for the integrity of the bacterial OM. Indeed, chelation of divalent cations is a well-established method to permeabilize Gram-negative bacteria such as Escherichia coli. Here, we use X-ray and neutron reflectivity (XRR and NR, respectively) techniques to examine the role of calcium ions in the stability of a model GNB-OM. Using XRR we show that Ca2+ binds to the core region of the rough mutant LPS (RaLPS) films, producing more ordered structures in comparison to divalent cation free monolayers. Using recently developed solid-supported models of the GNB-OM, we study the effect of calcium removal on the asymmetry of DPPC:RaLPS bilayers. We show that without the charge screening effect of divalent cations, the LPS is forced to overcome the thermodynamically unfavorable energy barrier and flip across the hydrophobic bilayer to minimize the repulsive electrostatic forces, resulting in about 20% mixing of LPS and DPPC between the inner and outer bilayer leaflets. These results reveal for the first time the molecular details behind the well-known mechanism of outer membrane stabilization by divalent cations. This confirms the relevance of the asymmetric models for future studies of outer membrane stability and antibiotic penetration.

  16. Effect of Divalent Cation Removal on the Structure of Gram-Negative Bacterial Outer Membrane Models

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Clifton, Luke A.; Skoda, Maximilian W. A.; Le Brun, Anton P.; Ciesielski, Filip; Kuzmenko, Ivan; Holt, Stephen A.; Lakey, Jeremy H.

    2014-12-09

    The Gram-negative bacterial outer membrane (GNB-OM) is asymmetric in its lipid composition with a phospholipid-rich inner leaflet and an outer leaflet predominantly composed of lipopolysaccharides (LPS). LPS are polyanionic molecules, with numerous phosphate groups present in the lipid A and core oligosaccharide regions. The repulsive forces due to accumulation of the negative charges are screened and bridged by the divalent cations (Mg2+ and Ca2+) that are known to be crucial for the integrity of the bacterial OM. Indeed, chelation of divalent cations is a well-established method to permeabilize Gram-negative bacteria such as Escherichia coli. Here, we use X-ray and neutronmore » reflectivity (XRR and NR, respectively) techniques to examine the role of calcium ions in the stability of a model GNB-OM. Using XRR we show that Ca2+ binds to the core region of the rough mutant LPS (RaLPS) films, producing more ordered structures in comparison to divalent cation free monolayers. Using recently developed solid-supported models of the GNB-OM, we study the effect of calcium removal on the asymmetry of DPPC:RaLPS bilayers. We show that without the charge screening effect of divalent cations, the LPS is forced to overcome the thermodynamically unfavorable energy barrier and flip across the hydrophobic bilayer to minimize the repulsive electrostatic forces, resulting in about 20% mixing of LPS and DPPC between the inner and outer bilayer leaflets. These results reveal for the first time the molecular details behind the well-known mechanism of outer membrane stabilization by divalent cations. This confirms the relevance of the asymmetric models for future studies of outer membrane stability and antibiotic penetration.« less

  17. Bacterial microcompartment assembly: The key role of encapsulation peptides

    SciTech Connect (OSTI)

    Aussignargues, Clment; Paasch, Bradley C.; Gonzalez-Esquer, Raul; Erbilgin, Onur; Kerfeld, Cheryl A.

    2015-06-23

    Bacterial microcompartments (BMCs) are proteinaceous organelles used by a broad range of bacteria to segregate and optimize metabolic reactions. Their functions are diverse, and can be divided into anabolic (carboxysome) and catabolic (metabolosomes) processes, depending on their cargo enzymes. The assembly pathway for the ?-carboxysome has been characterized, revealing that biogenesis proceeds from the inside out. The enzymes coalesce into a procarboxysome, followed by encapsulation in a protein shell that is recruited to the procarboxysome by a short (~17 amino acids) extension on the C-terminus of one of the encapsulated proteins. A similar extension is also found on the N- or C-termini of a subset of metabolosome core enzymes. These encapsulation peptides (EPs) are characterized by a primary structure predicted to form an amphipathic ?-helix that interacts with shell proteins. In this study, we review the features, function and widespread occurrence of EPs among metabolosomes, and propose an expanded role for EPs in the assembly of diverse BMCs.

  18. Structure-based receptor MIMICS targeted against bacterial superantigen toxins

    DOE Patents [OSTI]

    Gupta, Goutam (Santa Fe, NM); Hong-Geller, Elizabeth (Los Alamos, NM); Shiflett, Patrick R. (Los Alamos, NM); Lehnert, Nancy M. (Albuquerque, NM)

    2009-08-18

    The invention provides therapeutic compositions useful in the treatment of bacterial superantigen mediated conditions, such as Toxic Shock Syndrome. The compositions comprise genetically engineered bifunctional polypeptides containing a specific T-cell receptor binding domain and a specific MHC class II receptor binding domain, each targeting non-overlapping epitopes on a superantigen molecule against which they are designed. The anti-superantigen "receptor mimetics" or "chimeras" are rationally designed to recreate the modality of superantigen binding directly to both the TCR and the MHC-II receptor, and are capable of acting as decoys for superantigen binding, effectively out-competing the host T-cell and MHC-II receptors, the natural host receptors.

  19. ASSESSMENT OF MARKER PROTEINS IDENTIFIED IN WHOLE CELL EXTRACTS FOR BACTERIAL SPECIATION USING LIQUID CHROMATOGRAPHY ELECTROSPRAY IONIZATION TANDEM MASS SPECTROMETRY

    SciTech Connect (OSTI)

    Kooken, Jennifer M.; Fox, Karen F.; Fox, Alvin; Wunschel, David S.

    2014-02-02

    ASSESSMENT OF MARKER PROTEINS IDENTIFIED IN WHOLE CELL EXTRACTS FOR BACTERIAL SPECIATION USING LIQUID CHROMATOGRAPHY ELECTROSPRAY IONIZATION TANDEM MASS SPECTROMETRY

  20. Nucleic Acid-Based Detection and Identification of Bacterial and Fungal Plant Pathogens - Final Report

    SciTech Connect (OSTI)

    Kingsley, Mark T

    2001-03-13

    The threat to American interests from terrorists is not limited to attacks against humans. Terrorists might seek to inflict damage to the U.S. economy by attacking our agricultural sector. Infection of commodity crops by bacterial or fungal crop pathogens could adversely impact U.S. agriculture, either directly from damage to crops or indirectly from damage to our ability to export crops suspected of contamination. Recognizing a terrorist attack against U.S. agriculture, to be able to prosecute the terrorists, is among the responsibilities of the members of Hazardous Material Response Unit (HMRU) of the Federal Bureau of Investigation (FBI). Nucleic acid analysis of plant pathogen strains by the use of polymerase chain reaction (PCR) amplification techniques is a powerful method for determining the exact identity of pathogens, as well as their possible region of origin. This type of analysis, however, requires that PCR assays be developed specific to each particular pathogen strain, an d analysis protocols developed that are specific to the particular instrument used for detection. The objectives of the work described here were threefold: (1) to assess the potential terrorist threat to U.S. agricultural crops, (2) to determine whether suitable assays exist to monitor that threat, and (3) where assays are needed for priority plant pathogen threats, to modify or develop those assays for use by specialists at the HMRU. The assessment of potential threat to U.S. commodity crops and the availability of assays for those threats were described in detail in the Technical Requirements Document (9) and will be summarized in this report. This report addresses development of specific assays identified in the Technical Requirements Document, and offers recommendations for future development to ensure that HMRU specialists will be prepared with the PCR assays they need to protect against the threat of economic terrorism.

  1. Nucleic Acid-Based Detection and Identification of Bacterial and Fungal Plant Pathogens - Final Report

    SciTech Connect (OSTI)

    Kingsley, Mark T.

    2001-03-13

    The threat to American interests from terrorists is not limited to attacks against humans. Terrorists might seek to inflict damage to the U.S. economy by attacking our agricultural sector. Infection of commodity crops by bacterial or fungal crop pathogens could adversely impact U.S. agriculture, either directly from damage to crops or indirectly from damage to our ability to export crops suspected of contamination. Recognizing a terrorist attack against U.S. agriculture, to be able to prosecute the terrorists, is among the responsibilities of the members of Hazardous Material Response Unit (HMRU) of the Federal Bureau of Investigation (FBI). Nucleic acid analysis of plant pathogen strains by the use of polymerase chain reaction (PCR) amplification techniques is a powerful method for determining the exact identity of pathogens, as well as their possible region of origin. This type of analysis, however, requires that PCR assays be developed specific to each particular pathogen strain, and analysis protocols developed that are specific to the particular instrument used for detection. The objectives of the work described here were threefold: 1) to assess the potential terrorist threat to U.S. agricultural crops, 2) to determine whether suitable assays exist to monitor that threat, and 3) where assays are needed for priority plant pathogen threats, to modify or develop those assays for use by specialists at the HMRU. The assessment of potential threat to U.S. commodity crops and the availability of assays for those threats were described in detail in the Technical Requirements Document (9) and will be summarized in this report. This report addresses development of specific assays identified in the Technical Requirements Document, and offers recommendations for future development to ensure that HMRU specialists will be prepared with the PCR assays they need to protect against the threat of economic terrorism.

  2. Bacterial microcompartment assembly: The key role of encapsulation peptides

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Aussignargues, Clément; Paasch, Bradley C.; Gonzalez-Esquer, Raul; Erbilgin, Onur; Kerfeld, Cheryl A.

    2015-06-23

    Bacterial microcompartments (BMCs) are proteinaceous organelles used by a broad range of bacteria to segregate and optimize metabolic reactions. Their functions are diverse, and can be divided into anabolic (carboxysome) and catabolic (metabolosomes) processes, depending on their cargo enzymes. The assembly pathway for the β-carboxysome has been characterized, revealing that biogenesis proceeds from the inside out. The enzymes coalesce into a procarboxysome, followed by encapsulation in a protein shell that is recruited to the procarboxysome by a short (~17 amino acids) extension on the C-terminus of one of the encapsulated proteins. A similar extension is also found on the N-more » or C-termini of a subset of metabolosome core enzymes. These encapsulation peptides (EPs) are characterized by a primary structure predicted to form an amphipathic α-helix that interacts with shell proteins. In this study, we review the features, function and widespread occurrence of EPs among metabolosomes, and propose an expanded role for EPs in the assembly of diverse BMCs.« less

  3. Structures of Arg- and Gln-type bacterial cysteine dioxygenase homologs: Arg- and Gln-type Bacterial CDO Homologs

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Driggers, Camden M.; Hartman, Steven J.; Karplus, P. Andrew

    2015-01-01

    In some bacteria, cysteine is converted to cysteine sulfinic acid by cysteine dioxygenases (CDO) that are only ~15–30% identical in sequence to mammalian CDOs. Among bacterial proteins having this range of sequence similarity to mammalian CDO are some that conserve an active site Arg residue (“Arg-type” enzymes) and some having a Gln substituted for this Arg (“Gln-type” enzymes). Here, we describe a structure from each of these enzyme types by analyzing structures originally solved by structural genomics groups but not published: a Bacillus subtilis “Arg-type” enzyme that has cysteine dioxygenase activity (BsCDO), and a Ralstonia eutropha “Gln-type” CDO homolog ofmore » uncharacterized activity (ReCDOhom). The BsCDO active site is well conserved with mammalian CDO, and a cysteine complex captured in the active site confirms that the cysteine binding mode is also similar. The ReCDOhom structure reveals a new active site Arg residue that is hydrogen bonding to an iron-bound diatomic molecule we have interpreted as dioxygen. Notably, the Arg position is not compatible with the mode of Cys binding seen in both rat CDO and BsCDO. As sequence alignments show that this newly discovered active site Arg is well conserved among “Gln-type” CDO enzymes, we conclude that the “Gln-type” CDO homologs are not authentic CDOs but will have substrate specificity more similar to 3-mercaptopropionate dioxygenases.« less

  4. Facile method to stain the bacterial cell surface for super-resolution fluorescence microscopy

    SciTech Connect (OSTI)

    Gunsolus, Ian L.; Hu, Dehong; Mihai, Cosmin; Lohse, Samuel E.; Lee, Chang-Soo; Torelli, Marco; Hamers, Robert J.; Murphy, Catherine; Orr, Galya; Haynes, Christy L.

    2014-01-01

    A method to fluorescently stain the surfaces of both Gram-negative and Gram-positive bacterial cells compatible with super-resolution fluorescence microscopy is presented. This method utilizes a commercially-available fluorescent probe to label primary amines at the surface of the cell. We demonstrate efficient staining of two bacterial strains, the Gram-negative Shewanella oneidensis MR-1 and the Gram-positive Bacillus subtilis 168. Using structured illumination microscopy and stochastic optical reconstruction microscopy, which require high quantum yield or specialized dyes, we show that this staining method may be used to resolve the bacterial cell surface with sub-diffraction-limited resolution. We further use this method to identify localization patterns of nanomaterials, specifically cadmium selenide quantum dots, following interaction with bacterial cells.

  5. Towards an informative mutant phenotype for every bacterial gene

    SciTech Connect (OSTI)

    Deutschbauer, Adam; Price, Morgan N.; Wetmore, Kelly M.; Tarjan, Daniel R.; Xu, Zhuchen; Shao, Wenjen; Leon, Dacia; Arkin, Adam P.; Skerker, Jeffrey M.

    2014-08-11

    Mutant phenotypes provide strong clues to the functions of the underlying genes and could allow annotation of the millions of sequenced yet uncharacterized bacterial genes. However, it is not known how many genes have a phenotype under laboratory conditions, how many phenotypes are biologically interpretable for predicting gene function, and what experimental conditions are optimal to maximize the number of genes with a phenotype. To address these issues, we measured the mutant fitness of 1,586 genes of the ethanol-producing bacterium Zymomonas mobilis ZM4 across 492 diverse experiments and found statistically significant phenotypes for 89% of all assayed genes. Thus, in Z. mobilis, most genes have a functional consequence under laboratory conditions. We demonstrate that 41% of Z. mobilis genes have both a strong phenotype and a similar fitness pattern (cofitness) to another gene, and are therefore good candidates for functional annotation using mutant fitness. Among 502 poorly characterized Z. mobilis genes, we identified a significant cofitness relationship for 174. For 57 of these genes without a specific functional annotation, we found additional evidence to support the biological significance of these gene-gene associations, and in 33 instances, we were able to predict specific physiological or biochemical roles for the poorly characterized genes. Last, we identified a set of 79 diverse mutant fitness experiments in Z. mobilis that are nearly as biologically informative as the entire set of 492 experiments. Therefore, our work provides a blueprint for the functional annotation of diverse bacteria using mutant fitness.

  6. Towards an informative mutant phenotype for every bacterial gene

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Deutschbauer, Adam; Price, Morgan N.; Wetmore, Kelly M.; Tarjan, Daniel R.; Xu, Zhuchen; Shao, Wenjen; Leon, Dacia; Arkin, Adam P.; Skerker, Jeffrey M.

    2014-08-11

    Mutant phenotypes provide strong clues to the functions of the underlying genes and could allow annotation of the millions of sequenced yet uncharacterized bacterial genes. However, it is not known how many genes have a phenotype under laboratory conditions, how many phenotypes are biologically interpretable for predicting gene function, and what experimental conditions are optimal to maximize the number of genes with a phenotype. To address these issues, we measured the mutant fitness of 1,586 genes of the ethanol-producing bacterium Zymomonas mobilis ZM4 across 492 diverse experiments and found statistically significant phenotypes for 89% of all assayed genes. Thus, inmore » Z. mobilis, most genes have a functional consequence under laboratory conditions. We demonstrate that 41% of Z. mobilis genes have both a strong phenotype and a similar fitness pattern (cofitness) to another gene, and are therefore good candidates for functional annotation using mutant fitness. Among 502 poorly characterized Z. mobilis genes, we identified a significant cofitness relationship for 174. For 57 of these genes without a specific functional annotation, we found additional evidence to support the biological significance of these gene-gene associations, and in 33 instances, we were able to predict specific physiological or biochemical roles for the poorly characterized genes. Last, we identified a set of 79 diverse mutant fitness experiments in Z. mobilis that are nearly as biologically informative as the entire set of 492 experiments. Therefore, our work provides a blueprint for the functional annotation of diverse bacteria using mutant fitness.« less

  7. Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance

    SciTech Connect (OSTI)

    Goldfarb, K.C.; Karaoz, U.; Hanson, C.A.; Santee, C.A.; Bradford, M.A.; Treseder, K.K.; Wallenstein, M.D.; Brodie, E.L.

    2011-04-18

    Soils are immensely diverse microbial habitats with thousands of co-existing bacterial, archaeal, and fungal species. Across broad spatial scales, factors such as pH and soil moisture appear to determine the diversity and structure of soil bacterial communities. Within any one site however, bacterial taxon diversity is high and factors maintaining this diversity are poorly resolved. Candidate factors include organic substrate availability and chemical recalcitrance, and given that they appear to structure bacterial communities at the phylum level, we examine whether these factors might structure bacterial communities at finer levels of taxonomic resolution. Analyzing 16S rRNA gene composition of nucleotide analog-labeled DNA by PhyloChip microarrays, we compare relative growth rates on organic substrates of increasing chemical recalcitrance of >2,200 bacterial taxa across 43 divisions/phyla. Taxa that increase in relative abundance with labile organic substrates (i.e., glycine, sucrose) are numerous (>500), phylogenetically clustered, and occur predominantly in two phyla (Proteobacteria and Actinobacteria) including orders Actinomycetales, Enterobacteriales, Burkholderiales, Rhodocyclales, Alteromonadales, and Pseudomonadales. Taxa increasing in relative abundance with more chemically recalcitrant substrates (i.e., cellulose, lignin, or tannin-protein) are fewer (168) but more phylogenetically dispersed, occurring across eight phyla and including Clostridiales, Sphingomonadalaes, Desulfovibrionales. Just over 6% of detected taxa, including many Burkholderiales increase in relative abundance with both labile and chemically recalcitrant substrates. Estimates of median rRNA copy number per genome of responding taxa demonstrate that these patterns are broadly consistent with bacterial growth strategies. Taken together, these data suggest that changes in availability of intrinsically labile substrates may result in predictable shifts in soil bacterial composition.

  8. One-pot refolding of core histones from bacterial inclusion bodies allows

    Office of Scientific and Technical Information (OSTI)

    rapid reconstitution of histone octamer (Journal Article) | SciTech Connect SciTech Connect Search Results Journal Article: One-pot refolding of core histones from bacterial inclusion bodies allows rapid reconstitution of histone octamer Citation Details In-Document Search Title: One-pot refolding of core histones from bacterial inclusion bodies allows rapid reconstitution of histone octamer Authors: Lee, Young-Tae ; Gibbons, Garrett ; Lee, Shirley Y. ; Nikolovska-Coleska, Zaneta ; Dou, Yali

  9. Lubricating bacteria model for the growth of bacterial colonies exposed to ultraviolet radiation

    SciTech Connect (OSTI)

    Zhang Shengli; Zhang Lei; Liang Run; Zhang Erhu; Liu Yachao; Zhao Shumin

    2005-11-01

    In this paper, we study the morphological transition of bacterial colonies exposed to ultraviolet radiation by modifying the bacteria model proposed by Delprato et al. Our model considers four factors: the lubricant fluid generated by bacterial colonies, a chemotaxis initiated by the ultraviolet radiation, the intensity of the ultraviolet radiation, and the bacteria's two-stage destruction rate with given radiation intensities. Using this modified model, we simulate the ringlike pattern formation of the bacterial colony exposed to uniform ultraviolet radiation. The following is shown. (1) Without the UV radiation the colony forms a disklike pattern and reaches a constant front velocity. (2) After the radiation is switched on, the bacterial population migrates to the edge of the colony and forms a ringlike pattern. As the intensity of the UV radiation is increased the ring forms faster and the outer velocity of the colony decreases. (3) For higher radiation intensities the total population decreases, while for lower intensities the total population increases initially at a small rate and then decreases. (4) After the UV radiation is switched off, the bacterial population grows both outward as well as into the inner region, and the colony's outer front velocity recovers to a constant value. All these results agree well with the experimental observations [Phys. Rev. Lett. 87, 158102 (2001)]. Along with the chemotaxis, we find that lubricant fluid and the two-stage destruction rate are critical to the dynamics of the growth of the bacterial colony when exposed to UV radiation, and these were not previously considered.

  10. The Fate of Marine Bacterial Exopolysaccharide in Natural Marine Microbial Communities

    SciTech Connect (OSTI)

    Zhang, Zilian; Chen, Yi; Wang, Rui; Cai, Ruanhong; Fu, Yingnan; Jiao, Nianzhi; Quigg, Antonietta

    2015-11-16

    Most marine bacteria produce exopolysaccharides (EPS), and bacterial EPS represent an important source of dissolved organic carbon in marine ecosystems. It was proposed that bacterial EPS rich in uronic acid is resistant to mineralization by microbes and thus has a long residence time in global oceans. To confirm this hypothesis, bacterial EPS rich in galacturonic acid was isolated from Alteromonas sp. JL2810. The EPS was used to amend natural seawater to investigate the bioavailability of this EPS by native populations, in the presence and absence of ammonium and phosphate amendment. The data indicated that the bacterial EPS could not be completely consumed during the cultivation period and that the bioavailability of EPS was not only determined by its intrinsic properties, but was also determined by other factors such as the availability of inorganic nutrients. During the experiment, the humic-like component of fluorescent dissolved organic matter (FDOM) was freshly produced. Bacterial community structure analysis indicated that the class Flavobacteria of the phylum Bacteroidetes was the major contributor for the utilization of EPS. This report is the first to indicate that Flavobacteria are a major contributor to bacterial EPS degradation. Finally, the fraction of EPS that could not be completely utilized and the FDOM (e.g., humic acid-like substances) produced de novo may be refractory and may contribute to the carbon storage in the oceans.

  11. Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests

    SciTech Connect (OSTI)

    Hesse, Cedar N.; Mueller, Rebecca C.; Vuyisich, Momchilo; Gallegos-Graves, La Verne; Gleasner, Cheryl D.; Zak, Donald R.; Kuske, Cheryl R.

    2015-04-23

    Anthropogenic N deposition alters patterns of C and N cycling in temperate forests, where forest floor litter decomposition is a key process mediated by a diverse community of bacteria and fungi. To track forest floor decomposer activity we generated metatranscriptomes that simultaneously surveyed the actively expressed bacterial and eukaryote genes in the forest floor, to compare the impact of N deposition on the decomposers in two natural maple forests in Michigan, USA, where replicate field plots had been amended with N for 16 years. Site and N amendment responses were compared using about 74,000 carbohydrate active enzyme transcript sequences (CAZymes) in each metatranscriptome. Parallel ribosomal RNA (rRNA) surveys of bacterial and fungal biomass and taxonomic composition showed no significant differences in either biomass or OTU richness between the two sites or in response to N. Site and N amendment were not significant variables defining bacterial taxonomic composition, but they were significant for fungal community composition, explaining 17 and 14% of the variability, respectively. The relative abundance of expressed bacterial and fungal CAZymes changed significantly with N amendment in one of the forests, and N-response trends were also identified in the second forest. Although the two ambient forests were similar in community biomass, taxonomic structure and active CAZyme profile, the shifts in active CAZyme profiles in response to N-amendment differed between the sites. One site responded with an over-expression of bacterial CAZymes, and the other site responded with an over-expression of both fungal and different bacterial CAZymes. Both sites showed reduced representation of fungal lignocellulose degrading enzymes in N-amendment plots. The metatranscriptome approach provided a holistic assessment of eukaryote and bacterial gene expression and is applicable to other systems where eukaryotes and bacteria interact.

  12. Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Hesse, Cedar N.; Mueller, Rebecca C.; Vuyisich, Momchilo; Gallegos-Graves, La Verne; Gleasner, Cheryl D.; Zak, Donald R.; Kuske, Cheryl R.

    2015-04-23

    Anthropogenic N deposition alters patterns of C and N cycling in temperate forests, where forest floor litter decomposition is a key process mediated by a diverse community of bacteria and fungi. To track forest floor decomposer activity we generated metatranscriptomes that simultaneously surveyed the actively expressed bacterial and eukaryote genes in the forest floor, to compare the impact of N deposition on the decomposers in two natural maple forests in Michigan, USA, where replicate field plots had been amended with N for 16 years. Site and N amendment responses were compared using about 74,000 carbohydrate active enzyme transcript sequences (CAZymes)more » in each metatranscriptome. Parallel ribosomal RNA (rRNA) surveys of bacterial and fungal biomass and taxonomic composition showed no significant differences in either biomass or OTU richness between the two sites or in response to N. Site and N amendment were not significant variables defining bacterial taxonomic composition, but they were significant for fungal community composition, explaining 17 and 14% of the variability, respectively. The relative abundance of expressed bacterial and fungal CAZymes changed significantly with N amendment in one of the forests, and N-response trends were also identified in the second forest. Although the two ambient forests were similar in community biomass, taxonomic structure and active CAZyme profile, the shifts in active CAZyme profiles in response to N-amendment differed between the sites. One site responded with an over-expression of bacterial CAZymes, and the other site responded with an over-expression of both fungal and different bacterial CAZymes. Both sites showed reduced representation of fungal lignocellulose degrading enzymes in N-amendment plots. The metatranscriptome approach provided a holistic assessment of eukaryote and bacterial gene expression and is applicable to other systems where eukaryotes and bacteria interact.« less

  13. LLNL Genomic Assessment: Viral and Bacterial Sequencing Needs for TMTI, Tier 1 Report

    SciTech Connect (OSTI)

    Slezak, T; Borucki, M; Lenhoff, R; Vitalis, E

    2009-09-29

    The Lawrence Livermore National Lab Bioinformatics group has recently taken on a role in DTRA's Transformation Medical Technologies Initiative (TMTI). The high-level goal of TMTI is to accelerate the development of broad-spectrum countermeasures. To achieve those goals, TMTI has a near term need to obtain more sequence information across a large range of pathogens, near neighbors, and across a broad geographical and host range. Our role in this project is to research available sequence data for the organisms of interest and identify critical microbial sequence and knowledge gaps that need to be filled to meet TMTI objectives. This effort includes: (1) assessing current genomic sequence for each agent including phylogenetic and geographical diversity, host range, date of isolation range, virulence, sequence availability of key near neighbors, and other characteristics; (2) identifying Subject Matter Experts (SME's) and potential holders of isolate collections, contacting appropriate SME's with known expertise and isolate collections to obtain information on isolate availability and specific recommendations; (3) identifying sequence as well as knowledge gaps (eg virulence, host range, and antibiotic resistance determinants); (4) providing specific recommendations as to the most valuable strains to be placed on the DTRA sequencing queue. We acknowledge that criteria for prioritization of isolates for sequencing falls into two categories aligning with priority queues 1 and 2 as described in the summary. (Priority queue 0 relates to DTRA operational isolates whose availability is not predictable in advance.) 1. Selection of isolates that appear to have likelihood to provide information on virulence and antibiotic resistance. This will include sequence of known virulent strains. Particularly valuable would be virulent strains that have genetically similar yet avirulent, or non human transmissible, counterparts that can be used for comparison to help identify key virulence or host range genes. This approach will provide information that can be used by structural biologists to help develop therapeutics and vaccines. We have pointed out such high priority strains of which we are aware, and note that if any such isolates should be discovered, they will rise to the top priority. We anticipate difficulty locating samples with unusual resistance phenotypes, in particular. Sequencing strategies for isolates in queue 1 should aim for as complete finishing status as possible, since high-quality initial annotation (gene-calling) will be necessary for the follow-on protein structure analyses contributing to countermeasure development. Queue 2 for sequencing determination will be more dynamic than queue 1, and samples will be added to it as they become available to the TMTI program. 2. Selection of isolates that will provide broader information about diversity and phylogenetics and aid in specific detection as well as forensics. This approach focuses on sequencing of isolates that will provide better resolution of variants that are (or were) circulating in nature. The finishing strategy for queue 2 does not require complete closing with annotation. This queue is more static, as there is considerable phylogenetic data, and in this report we have sought to reveal gaps and make suggestions to fill them given existing sequence data and strain information. In this report we identify current sequencing gaps in both priority queue categories. Note that this is most applicable to the bacterial pathogens, as most viruses are by default in queue 1. The Phase I focus of this project is on viral hemorrhagic fever viruses and Category A bacterial agents as defined to us by TMTI. We have carried out individual analyses on each species of interest, and these are included as chapters in this report. Viruses and bacteria are biologically very distinct from each other and require different methods of analysis and criteria for sequencing prioritization. Therefore, we will describe our methods, analyses and conclusions separately for each category.

  14. Bacterial inosine 5'-monophosphate dehydrogenase ("IMPDH") DNA as a dominant selectable marker in mammals and other eukaryotes

    DOE Patents [OSTI]

    Huberman, Eliezer (Chicago, IL); Baccam, Mekhine J. (Woodridge, IL)

    2007-02-27

    The present invention relates to a nucleic acid sequence and its corresponding protein sequence useful as a dominant selectable marker in eukaryotes. More specifically the invention relates to a nucleic acid encoding a bacterial IMPDH gene that has been engineered into a eukaryotic expression vectors, thereby permitting bacterial IMPDH expression in mammalian cells. Bacterial IMPDH expression confers resistance to MPA which can be used as dominant selectable marker in eukaryotes including mammals. The invention also relates to expression vectors and cells that express the bacterial IMPDH gene as well as gene therapies and protein synthesis.

  15. Bacterially induced precipitation of CaCO sub 3 : An example from studies of cyanobacterial mats

    SciTech Connect (OSTI)

    Chafetz, H.S.

    1990-04-30

    Bacteria induce the precipitation of calcium carbonate in the laboratory and in nature by altering their chemical environment. Geologists are recognizing the possibility that bacterially induced precipitates may form significant mineral deposits, unfortunately, there are currently no sound criteria by which they can be recognized in recent sediments, or in the rock record. Cultures of aerobic and facultative bacteria from cyanobacterial mats on Andros Island, Bahamas, and Baffin Bay, Texas, induced the precipitation of calcium carbonate under controlled conditions. Crusts, the largest features formed, are composed of 5--200{mu}m diameter bundles which are, in turn, composed of numerous individual crystals. The smallest observed features are 0.1--0.4{mu}m spheres and rods which comprise some individual crystals and crystal bundles. Crystal bundles resembling rhombohedra, tetragonal disphenoids, tetragonal dipyramids, and calcite dumbbells appear to be uniquely bacterial in origin, and they have all been observed in recent sediments. Swollen rods, discs, curved dumbbells, and 50--200{mu}m optically continuous crystals resembling brushes may be uniquely bacterial in origin, however, they have not been reported by other laboratories nor observed in natural settings. Presence of any of these forms in recent sediments should be taken as strong evidence for bacterial influence. Spheres and aragonite dumbbells have also been observed in natural environments, however, they are not always bacterial in origin. Precipitation of calcium carbonate occurs preferentially on dead cyanobacteria in the presence of bacteria. Lithification of algal mats to form stromatolites may take place in the zone of decaying organic matter due to bacterial activity.

  16. Structural and Biochemical Analysis of DNA Helix Invasion by the Bacterial

    Office of Scientific and Technical Information (OSTI)

    8-Oxoguanine DNA Glycosylase MutM (Journal Article) | SciTech Connect and Biochemical Analysis of DNA Helix Invasion by the Bacterial 8-Oxoguanine DNA Glycosylase MutM Citation Details In-Document Search Title: Structural and Biochemical Analysis of DNA Helix Invasion by the Bacterial 8-Oxoguanine DNA Glycosylase MutM Authors: Sung, Rou-Jia ; Zhang, Michael ; Qi, Yan ; Verdine, Gregory L. [1] ; Harvard) [2] ; DFCI) [2] + Show Author Affiliations (Harvard-Med) ( Publication Date: 2013-07-26

  17. The Fate of Marine Bacterial Exopolysaccharide in Natural Marine Microbial Communities

    Office of Scientific and Technical Information (OSTI)

    The Fate of Marine Bacterial Exopolysaccharide in Natural Marine Microbial Communities CrossMark click for updates n OPEN ACCESS Citation: Zhang Z, Chen Y, Wang R, Cai R, Fu Y, Jiao N (2015) The Fate of Marine Bacterial Exopolysaccharide in Natural Marine Microbial Communities. PLoS ONE 10(11): e0142690. doi:10.1371/journal.pone.0142690 Editor: Antonietta Quigg, Texas A&M University at Galveston, UNITED STATES Received: March 18,2015 Accepted: October 26,2015 Published: November 16,2015

  18. DOE-Funded Research on Bacterial Enzyme Could Lead to Cheaper Biofuel |

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Department of Energy DOE-Funded Research on Bacterial Enzyme Could Lead to Cheaper Biofuel DOE-Funded Research on Bacterial Enzyme Could Lead to Cheaper Biofuel May 28, 2014 - 12:24pm Addthis A microorganism found in heated freshwater pools may hold the key to more efficient, cost-effective biofuel production. Researchers at the Department of Energy's National Renewable Energy Laboratory found that an enzyme known as CelA can digest cellulose almost twice as fast as the leading enzyme

  19. EERE Success Story-DOE-Funded Research on Bacterial Enzyme Could Lead to

    Office of Environmental Management (EM)

    Cheaper Biofuel | Department of Energy DOE-Funded Research on Bacterial Enzyme Could Lead to Cheaper Biofuel EERE Success Story-DOE-Funded Research on Bacterial Enzyme Could Lead to Cheaper Biofuel May 28, 2014 - 12:24pm Addthis A microorganism found in heated freshwater pools may hold the key to more efficient, cost-effective biofuel production. Researchers at the Department of Energy's National Renewable Energy Laboratory found that an enzyme known as CelA can digest cellulose almost twice

  20. MICROFLUIDIC MODULES FOR ISOLATION OF RECOMBINANT CYTOKINE FROM BACTERIAL LYSATES

    SciTech Connect (OSTI)

    Millet, Larry J; Retterer, Scott T; Doktycz, Mitchel John

    2014-01-01

    The portability and personalization of health-care diagnostics and treatments benefits from advancements and applications of micro and nanotechnology. Modularization and miniaturization of standardized biochemical processes and tests facilitates the advancement and customization of analyte detection and diagnosis on-chip. The goal of our work here is to develop modular platforms for on-chip biochemical processing of synthesized biologics for a range of on-demand applications. Our report focuses on the initial development, characterization and application of microfluidic size exclusion/gel filtration and ion exchange protein concentration modules for cytokine isolation from spiked cell extracts.

  1. K+ block is the mechanism of functional asymmetry in bacterial Nav channels

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Ngo, Van; Wang, Yibo; Haas, Stephan; Noskov, Sergei Y.; Farley, Robert A.; Weinstein, Harel

    2016-01-04

    Crystal structures of several bacterial Nav channels have been recently published and molecular dynamics simulations of ion permeation through these channels are consistent with many electrophysiological properties of eukaryotic channels. Bacterial Nav channels have been characterized as functionally asymmetric, and the mechanism of this asymmetry has not been clearly understood. To address this question, we combined non-equilibrium simulation data with two-dimensional equilibrium unperturbed landscapes generated by umbrella sampling and Weighted Histogram Analysis Methods for multiple ions traversing the selectivity filter of bacterial NavAb channel. This approach provided new insight into the mechanism of selective ion permeation in bacterial Nav channels.more » The non-equilibrium simulations indicate that two or three extracellular K+ ions can block the entrance to the selectivity filter of NavAb in the presence of applied forces in the inward direction, but not in the outward direction. The block state occurs in an unstable local minimum of the equilibrium unperturbed free-energy landscape of two K+ ions that can be ‘locked’ in place bymodest applied forces. In contrast to K+, three Na+ ions move favorably through the selectivity filter together as a unit in a loose “knock-on” mechanism of permeation in both inward and outward directions, and there is no similar local minimum in the two-dimensional free-energy landscape of two Na+ ions for a block state. The useful work predicted by the non-equilibrium simulations that is required to break the K+ block is equivalent to large applied potentials experimentally measured for two bacterial Nav channels to induce inward currents of K+ ions. Here, these results illustrate how inclusion of non-equilibrium factors in the simulations can provide detailed information about mechanisms of ion selectivity that is missing from mechanisms derived from either crystal structures or equilibrium unperturbed free-energy landscapes.« less

  2. Quadrature conductivity: A quantitative indicator of bacterial abundance in porous media

    SciTech Connect (OSTI)

    Chi Zhang; Andre Revil; Yoshiko Fujita; Junko Munakata-Marr; George Redden

    2014-09-01

    ABSTRACT The abundance and growth stages of bacteria in subsurface porous media affect the concentrations and distributions of charged species within the solid-solution interfaces. Therefore, spectral induced polarization (SIP) measurements can be used to monitor changes in bacterial biomass and growth stage. Our goal was to gain a better understanding of the SIP response of bacteria present in a porous material. Bacterial cell surfaces possess an electric double layer and therefore become polarized in an electric field. We performed SIP measurements over the frequency range of 0.11 kHz on cell suspensions alone and cell suspensions mixed with sand at four pore water conductivities. We used Zymomonas mobilis at four different cell densities (in- cluding the background). The quadrature conductivity spectra exhibited two peaks, one around 0.050.10 Hz and the other around 110 Hz. Because SIP measurements on bacterial suspensions are typically made at frequencies greater than 1 Hz, these peaks have not been previously reported. In the bac-terial suspensions in growth medium, the quadrature conduc-tivity at peak I was linearly proportional to the density of the bacteria. For the case of the suspensions mixed with sands, we observed that peak II presented a smaller increase in the quadrature conductivity with the cell density. A comparison of the experiments with and without sand grains illustrated the effect of the porous medium on the overall quadrature con- ductivity response (decrease in the amplitude and shift of the peaks to the lower frequencies). Our results indicate that for a given porous medium, time-lapse SIP has potential for mon- itoring changes in bacterial abundance within porous media.

  3. Engineered enzymatically active bacteriophages and methods of uses thereof

    DOE Patents [OSTI]

    Collins, James J (Newton, MA); Kobayashi, Hideki (Yokohama, JP); Kearn, Mads (Ottawa, CA); Araki, Michihiro (Minatoku, JP); Friedland, Ari (Boston, MA); Lu, Timothy Kuan-Ta (Palo Alto, CA)

    2012-05-22

    The present invention provides engineered bacteriophages that express at least one biofilm degrading enzyme on their surface and uses thereof for degrading bacterial biofilms. The invention also provides genetically engineered bacteriophages expressing the biofilm degrading enzymes and proteins necessary for the phage to replicate in different naturally occurring biofilm producing bacteria. The phages of the invention allow a method of biofilm degradation by the use of one or only a few administration of the phage because the system using these phages is self perpetuating, and capable of degrading biofilm even when the concentration of bacteria within the biofilm is low.

  4. A functional gene array for detection of bacterial virulence elements

    SciTech Connect (OSTI)

    Jaing, C

    2007-11-01

    We report our development of the first of a series of microarrays designed to detect pathogens with known mechanisms of virulence and antibiotic resistance. By targeting virulence gene families as well as genes unique to specific biothreat agents, these arrays will provide important data about the pathogenic potential and drug resistance profiles of unknown organisms in environmental samples. To validate our approach, we developed a first generation array targeting genes from Escherichia coli strains K12 and CFT073, Enterococcus faecalis and Staphylococcus aureus. We determined optimal probe design parameters for microorganism detection and discrimination, measured the required target concentration, and assessed tolerance for mismatches between probe and target sequences. Mismatch tolerance is a priority for this application, due to DNA sequence variability among members of gene families. Arrays were created using the NimbleGen Maskless Array Synthesizer at Lawrence Livermore National Laboratory. Purified genomic DNA from combinations of one or more of the four target organisms, pure cultures of four related organisms, and environmental aerosol samples with spiked-in genomic DNA were hybridized to the arrays. Based on the success of this prototype, we plan to design further arrays in this series, with the goal of detecting all known virulence and antibiotic resistance gene families in a greatly expanded set of organisms.

  5. Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations

    SciTech Connect (OSTI)

    Xue, Hong; Cordero, Otto X.; Camas, Francisco M.; Trimble, William; Meyer, Folker; Guglielmini, Julien; Rocha, Eduardo P. C.; Polz, Martin F.

    2015-05-05

    Although plasmids and other episomes are recognized as key players in horizontal gene transfer among microbes, their diversity and dynamics among ecologically structured host populations in the wild remain poorly understood. Here, we show that natural populations of marine Vibrionaceae bacteria host large numbers of families of episomes, consisting of plasmids and a surprisingly high fraction of plasmid-like temperate phages. Episomes are unevenly distributed among host populations, and contrary to the notion that high-density communities in biofilms act as hot spots of gene transfer, we identified a strong bias for episomes to occur in free-living as opposed to particle-attached cells. Mapping of episomal families onto host phylogeny shows that, with the exception of all phage and a few plasmid families, most are of recent evolutionary origin and appear to have spread rapidly by horizontal transfer. Such high eco-evolutionary turnover is particularly surprising for plasmids that are, based on previously suggested categorization, putatively nontransmissible, indicating that this type of plasmid is indeed frequently transferred by currently unknown mechanisms. Finally, analysis of recent gene transfer among plasmids reveals a network of extensive exchange connecting nearly all episomes. Genes functioning in plasmid transfer and maintenance are frequently exchanged, suggesting that plasmids can be rapidly transformed from one category to another. The broad distribution of episomes among distantly related hosts and the observed promiscuous recombination patterns show how episomes can offer their hosts rapid assembly and dissemination of novel functions.

  6. Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Xue, Hong; Cordero, Otto X.; Camas, Francisco M.; Trimble, William; Meyer, Folker; Guglielmini, Julien; Rocha, Eduardo P. C.; Polz, Martin F.

    2015-05-05

    Although plasmids and other episomes are recognized as key players in horizontal gene transfer among microbes, their diversity and dynamics among ecologically structured host populations in the wild remain poorly understood. Here, we show that natural populations of marine Vibrionaceae bacteria host large numbers of families of episomes, consisting of plasmids and a surprisingly high fraction of plasmid-like temperate phages. Episomes are unevenly distributed among host populations, and contrary to the notion that high-density communities in biofilms act as hot spots of gene transfer, we identified a strong bias for episomes to occur in free-living as opposed to particle-attached cells.more » Mapping of episomal families onto host phylogeny shows that, with the exception of all phage and a few plasmid families, most are of recent evolutionary origin and appear to have spread rapidly by horizontal transfer. Such high eco-evolutionary turnover is particularly surprising for plasmids that are, based on previously suggested categorization, putatively nontransmissible, indicating that this type of plasmid is indeed frequently transferred by currently unknown mechanisms. Finally, analysis of recent gene transfer among plasmids reveals a network of extensive exchange connecting nearly all episomes. Genes functioning in plasmid transfer and maintenance are frequently exchanged, suggesting that plasmids can be rapidly transformed from one category to another. The broad distribution of episomes among distantly related hosts and the observed promiscuous recombination patterns show how episomes can offer their hosts rapid assembly and dissemination of novel functions.« less

  7. Clone Bacterial Thermal Stable Enzymes in T. Reesei: Cooperative Research and Development Final Report, CRADA Number CRD-01-00105

    SciTech Connect (OSTI)

    Himmel, M. E.

    2010-08-01

    The focus of this CRADA was on improving the efficacy of GCI's primary host for commercial cellulase production, Trichoderma reesei.

  8. Improved Bacterial and Viral Recoveries from 'Complex' Samples using Electrophoretically Assisted Acoustic Focusing

    SciTech Connect (OSTI)

    Ness, K; Rose, K; Jung, B; Fisher, K; Mariella, Jr., R P

    2008-03-27

    Automated front-end sample preparation technologies can significantly enhance the sensitivity and reliability of biodetection assays [1]. We are developing advanced sample preparation technologies for biowarfare detection and medical point-of-care diagnostics using microfluidic systems with continuous sample processing capabilities. Here we report an electrophoretically assisted acoustic focusing technique to rapidly extract and enrich viral and bacterial loads from 'complex samples', applied in this case to human nasopharyngeal samples as well as simplified surrogates. The acoustic forces capture and remove large particles (> 2 {micro}m) such as host cells, debris, dust, and pollen from the sample. We simultaneously apply an electric field transverse to the flow direction to transport small ({le} 2 {micro}m), negatively-charged analytes into a separate purified recovery fluid using a modified H-filter configuration [Micronics US Patent 5,716,852]. Hunter and O'Brien combined transverse electrophoresis and acoustic focusing to measure the surface charge on large particles, [2] but to our knowledge, our work is the first demonstration combining these two techniques in a continuous flow device. Marina et al. demonstrated superimposed dielectrophoresis (DEP) and acoustic focusing for enhanced separations [3], but these devices have limited throughput due to the rapid decay of DEP forces. Both acoustic standing waves and electric fields exert significant forces over the entire fluid volume in microchannels, thus allowing channels with larger dimensions (> 100 {micro}m) and high throughputs (10-100 {micro}L/min) necessary to process real-world volumes (1 mL). Previous work demonstrated acoustic focusing of microbeads [4] and biological species [5] in various geometries. We experimentally characterized our device by determining the biological size-cutoff where acoustic radiation pressure forces no longer transport biological particles. Figure 1 shows images of E.Coli ({approx}1 {micro}m) and yeast ({approx}4-5 {micro}m) flowing in a microchannel (200 {micro}m deep, 500 {micro}m wide) at a flow rate of 10 {micro}L/min. The E.Coli does not focus in the acoustic field while the yeast focuses at the channel centerline. This result suggests the acoustic size-cutoff for biological particles in our device lies between 2 and 3 {micro}m. Transverse electrophoresis has been explored extensively in electric field flow fractionation [6] and isoelectric focusing devices [7]. We demonstrated transverse electrophoretic transport of a wide variety of negatively-charged species, including fluorophores, beads, viruses, E.Coli, and yeast. Figure 2 shows the electromigration of a fluorescently labeled RNA virus (MS2) from the lower half of the channel to the upper half region with continuous flow. We demonstrated the effectiveness of our electrophoretically assisted acoustic focusing device by separating virus-like particles (40 nm fluorescent beads, selected to aid in visualization) from a high background concentration of yeast contaminants (see Figure 3). Our device allows for the efficient recovery of virus into a pre-selected purified buffer while background contaminants are acoustically captured and removed. We also tested the device using clinical nasopharyngeal samples, both washes and lavages, and demonstrated removal of unknown particulates (>2 ?m size) from the sample. Our future research direction includes spiking known amounts of bacteria and viruses into clinical samples and performing quantitative off-chip analysis (real-time PCR and flow cytometry).

  9. Characterization of the bacterial metagenome in an industrial algae bioenergy production system

    SciTech Connect (OSTI)

    Huang, Shi; Fulbright, Scott P; Zeng, Xiaowei; Yates, Tracy; Wardle, Greg; Chisholm, Stephen T; Xu, Jian; Lammers, Peter

    2011-03-16

    Cultivation of oleaginous microalgae for fuel generally requires growth of the intended species to the maximum extent supported by available light. The presence of undesired competitors, pathogens and grazers in cultivation systems will create competition for nitrate, phosphate, sulfate, iron and other micronutrients in the growth medium and potentially decrease microalgal triglyceride production by limiting microalgal health or cell density. Pathogenic bacteria may also directly impact the metabolism or survival of individual microalgal cells. Conversely, symbiotic bacteria that enhance microalgal growth may also be present in the system. Finally, the use of agricultural and municipal wastes as nutrient inputs for microalgal production systems may lead to the introduction and proliferation of human pathogens or interfere with the growth of bacteria with beneficial effects on system performance. These considerations underscore the need to understand bacterial community dynamics in microalgal production systems in order to assess microbiome effects on microalgal productivity and pathogen risks. Here we focus on the bacterial component of microalgal production systems and describe a pipeline for metagenomic characterization of bacterial diversity in industrial cultures of an oleaginous alga, Nannochloropsis salina. Environmental DNA was isolated from 12 marine algal cultures grown at Solix Biofuels, a region of the 16S rRNA gene was amplified by PCR, and 16S amplicons were sequenced using a 454 automated pyrosequencer. The approximately 70,000 sequences that passed quality control clustered into 53,950 unique sequences. The majority of sequences belonged to thirteen phyla. At the genus level, sequences from all samples represented 169 different genera. About 52.94% of all sequences could not be identified at the genus level and were classified at the next highest possible resolution level. Of all sequences, 79.92% corresponded to 169 genera and 70 other taxa. We apply a principal component analysis across the initial sample set to draw correlations between sample variables and changes in microbiome populations.

  10. Economic Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Economic Development Economic Development Los Alamos is committed to investing and partnering in economic development initiatives and programs that have a positive impact to stimulate business growth that creates jobs and strengthens communities in Northern New Mexico. September 20, 2013 LANS Venture Acceleration Fund (VAF) award enabled Ideum to develop motion recognition software for international release. Jim Spadaccini (R) has tapped into the Lab's economic development programs: VAF, NMSBA,

  11. Structural Studies of Bacterial Enzymes and their Relation to Antibiotic Resistance Mechanisms - Final Paper

    SciTech Connect (OSTI)

    Maltz, Lauren

    2015-08-27

    By using protein crystallography and X-ray diffraction, structures of bacterial enzymes were solved to gain a better understanding of how enzymatic modification acts as an antibacterial resistance mechanism. Aminoglycoside phosphotransferases (APHs) are one of three aminoglycoside modifying enzymes that confer resistance to the aminoglycoside antibiotics via enzymatic modification, rendering many drugs obsolete. Specifically, the APH(2) family vary in their substrate specificities and also in their preference for the phosphate donor (ADP versus GDP). By solving the structures of members of the APH(2) family of enzymes, we can see how domain movements are important to their substrate specificity. Our structure of the ternary complex of APH(2)-IIIa with GDP and kanamycin, when compared to the known structures of APH(2)-IVa, reveals that there are real physical differences between these two enzymes, a structural finding that explains why the two enzymes differ in their preferences for certain aminoglycosides. Another important group of bacterial resistance enzymes are the Class D ?- lactamases. Oxacillinase carbapenemases (OXAs) are part of this enzyme class and have begun to confer resistance to last resort drugs, most notably carbapenems. Our structure of OXA-143 shows that the conformational flexibility of a conserved hydrophobic residue in the active site (Val130) serves to control the entry of a transient water molecule responsible for a key step in the enzymes mechanism. Our results provide insight into the structural mechanisms of these two different enzymes

  12. Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

    SciTech Connect (OSTI)

    Aylward, Frank O.; Burnum, Kristin E.; Scott, Jarrod J.; Suen, Garret; Tringe, Susannah G.; Adams, Sandra M.; Barry, Kerrie W.; Nicora, Carrie D.; Piehowski, Paul D.; Purvine, Samuel O.; Starrett, Gabriel J.; Goodwin, Lynne A.; Smith, Richard D.; Lipton, Mary S.; Currie, Cameron R.

    2012-09-01

    Herbivores gain access to nutrients stored in plant biomass largely by harnessing the metabolic activities of microbes. Leaf-cutter ants of the genus Atta are a hallmark example; these dominant Neotropical herbivores cultivate symbiotic fungus gardens on massive quantities of fresh plant forage. As the external digestive system of the ants, fungus gardens facilitate the production and sustenance of millions of workers in mature Atta colonies. Here we use metagenomic, and metaproteomic techniques to characterize the bacterial diversity and overall physiological potential of fungus gardens from two species of Atta. Our analysis of over 1.2 Gbp of community metagenomic sequence and three 16S pyrotag libraries reveals that, in addition to harboring the dominant fungal crop, these ecosystems contain abundant populations of Enterobacteriaceae, including the genera Enterobacter, Pantoea, Klebsiella, Citrobacter, and Escherichia. We show that these bacterial communities possess genes commonly associated with lignocellulose degradation, and likely participate in the processing of plant biomass. Additionally, we demonstrate that bacteria in these environments encode a diverse suite of biosynthetic pathways, and that they may enrich the nitrogen-poor forage of the ants with B-vitamins, amino acids, and proteins. These results are consistent with the hypothesis that fungus gardens are highly-specialized fungus-bacteria communities that efficiently convert plant material into usable energy for their ant hosts. Together with recent investigations into the microbial symbionts of vertebrates, our work underscores the importance of microbial communities to the ecology and evolution of herbivorous metazoans.

  13. Bacterial Community Succession During in situ Uranium Bioremediation: Spatial Similarities Along Controlled Flow Paths

    SciTech Connect (OSTI)

    Hwang, Chiachi; Wu, Weimin; Gentry, Terry J.; Carley, Jack; Corbin, Gail A.; Carroll, Sue L.; Watson, David B.; Jardine, Phil M.; Zhou, Jizhong; Criddle, Craig S.; Fields, Matthew W.

    2009-05-22

    Bacterial community succession was investigated in a field-scale subsurface reactor formed by a series of wells that received weekly ethanol additions to re-circulating groundwater. Ethanol additions stimulated denitrification, metal reduction, sulfate reduction, and U(VI) reduction to sparingly soluble U(IV). Clone libraries of SSU rRNA gene sequences from groundwater samples enabled tracking of spatial and temporal changes over a 1.5 y period. Analyses showed that the communities changed in a manner consistent with geochemical variations that occurred along temporal and spatial scales. Canonical correspondence analysis revealed that the levels of nitrate, uranium, sulfide, sulfate, and ethanol strongly correlated with particular bacterial populations. As sulfate and U(VI) levels declined, sequences representative of sulfate-reducers and metal-reducers were detected at high levels. Ultimately, sequences associated with sulfate-reducing populations predominated, and sulfate levels declined as U(VI) remained at low levels. When engineering controls were compared to the population variation via canonical ordination, changes could be related to dissolved oxygen control and ethanol addition. The data also indicated that the indigenous populations responded differently to stimulation for bio-reduction; however, the two bio-stimulated communities became more similar after different transitions in an idiosyncratic manner. The strong associations between particular environmental variables and certain populations provide insight into the establishment of practical and successful remediation strategies in radionuclide-contaminated environments with respect to engineering controls and microbial ecology.

  14. 1

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Breakthrough antibacterial approach could resolve serious skin infections August 26, 2014 Los Alamos and partners test ionic liquids to break bacterial biofilm layer and save lives LOS ALAMOS, N.M., Aug. 26, 2014-Like a protective tent over a colony of harmful bacteria, biofilms make the treatment of skin infections especially difficult. Microorganisms protected in a biofilm pose a significant health risk due to their antibiotic resistance and recalcitrance to treatment, and biofilm-protected

  15. Bacterially induced precipitation of CaCO{sub 3}: An example from studies of cyanobacterial mats. Final report

    SciTech Connect (OSTI)

    Chafetz, H.S.

    1990-04-30

    Bacteria induce the precipitation of calcium carbonate in the laboratory and in nature by altering their chemical environment. Geologists are recognizing the possibility that bacterially induced precipitates may form significant mineral deposits, unfortunately, there are currently no sound criteria by which they can be recognized in recent sediments, or in the rock record. Cultures of aerobic and facultative bacteria from cyanobacterial mats on Andros Island, Bahamas, and Baffin Bay, Texas, induced the precipitation of calcium carbonate under controlled conditions. Crusts, the largest features formed, are composed of 5--200{mu}m diameter bundles which are, in turn, composed of numerous individual crystals. The smallest observed features are 0.1--0.4{mu}m spheres and rods which comprise some individual crystals and crystal bundles. Crystal bundles resembling rhombohedra, tetragonal disphenoids, tetragonal dipyramids, and calcite dumbbells appear to be uniquely bacterial in origin, and they have all been observed in recent sediments. Swollen rods, discs, curved dumbbells, and 50--200{mu}m optically continuous crystals resembling brushes may be uniquely bacterial in origin, however, they have not been reported by other laboratories nor observed in natural settings. Presence of any of these forms in recent sediments should be taken as strong evidence for bacterial influence. Spheres and aragonite dumbbells have also been observed in natural environments, however, they are not always bacterial in origin. Precipitation of calcium carbonate occurs preferentially on dead cyanobacteria in the presence of bacteria. Lithification of algal mats to form stromatolites may take place in the zone of decaying organic matter due to bacterial activity.

  16. Program Development

    SciTech Connect (OSTI)

    Atencio, Julian J.

    2014-05-01

    This presentation covers how to go about developing a human reliability program. In particular, it touches on conceptual thinking, raising awareness in an organization, the actions that go into developing a plan. It emphasizes evaluating all positions, eliminating positions from the pool due to mitigating factors, and keeping the process transparent. It lists components of the process and objectives in process development. It also touches on the role of leadership and the necessity for audit.

  17. The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity

    SciTech Connect (OSTI)

    Payne, Samuel H.; Monroe, Matthew E.; Overall, Christopher C.; Kiebel, Gary R.; Degan, Michael G.; Gibbons, Bryson C.; Fujimoto, Grant M.; Purvine, Samuel O.; Adkins, Joshua N.; Lipton, Mary S.; Smith, Richard D.

    2015-08-18

    This dataset deposition announces the submission to public repositories of the PNNL Biodiversity Library, a large collection of global proteomics data for 112 bacterial and archaeal organisms. The data comprises 35,162 tandem mass spectrometry (MS/MS) datasets from ~10 years of research. All data has been searched, annotated and organized in a consistent manner to promote reuse by the community. Protein identifications were cross-referenced with KEGG functional annotations which allows for pathway oriented investigation. We present the data as a freely available community resource. A variety of data re-use options are described for computational modeling, proteomics assay design and bioengineering. Instrument data and analysis files are available at ProteomeXchange via the MassIVE partner repository under the identifiers PXD001860 and MSV000079053.

  18. The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Payne, Samuel H.; Monroe, Matthew E.; Overall, Christopher C.; Kiebel, Gary R.; Degan, Michael G.; Gibbons, Bryson C.; Fujimoto, Grant M.; Purvine, Samuel O.; Adkins, Joshua N.; Lipton, Mary S.; et al

    2015-08-18

    This dataset deposition announces the submission to public repositories of the PNNL Biodiversity Library, a large collection of global proteomics data for 112 bacterial and archaeal organisms. The data comprises 35,162 tandem mass spectrometry (MS/MS) datasets from ~10 years of research. All data has been searched, annotated and organized in a consistent manner to promote reuse by the community. Protein identifications were cross-referenced with KEGG functional annotations which allows for pathway oriented investigation. We present the data as a freely available community resource. A variety of data re-use options are described for computational modeling, proteomics assay design and bioengineering. Instrumentmore » data and analysis files are available at ProteomeXchange via the MassIVE partner repository under the identifiers PXD001860 and MSV000079053.« less

  19. Conservation of Modules but not Phenotype in Bacterial Response to Environmental Stress

    SciTech Connect (OSTI)

    Timberlake, Sonia; Joachimiak, Marcin; Joyner, Dominique; Chakraborty, Romy; Baumohl, Jason; Dehal, Paramvir; Arkin, Adam; Hazen, Terry; Alm, Eric

    2010-05-17

    Microbes live in changing environments and change their phenotype via gene regulation in response. Although this transcriptional response is important for fitness, very little is known about how it evolves in microbes. We started by asking a number of high-level questions about the evolution of transcriptional phenotype: (1) To what extent is transcriptional response conserved, i.e. do conserved genes respond similarly to the same condition; (2) To what extent are transcriptional modules conserved; and (3) Does there exist a general stress response to a variety of stressors? To illuminate these questions, we analyzed more than 500 microarray experiments across the bacterial domain. We looked for conservation of transcriptional regulation both in close sister species and vastly divergent clades. In addition, we produced and analyzed an extensive in-house compendium of environmental stress data in three metal-reducing bacteria.

  20. Structure of the Transmembrane Regions of a Bacterial Cyclic Nucleotide-Regulated Channel

    SciTech Connect (OSTI)

    Clayton,G.; Latieri, S.; Heginbotham, L.; Unger, V.; Morais-Cabral, J.

    2008-01-01

    The six-transmembrane helix (6 TM) tetrameric cation channels form the largest ion channel family, some members of which are voltage-gated and others are not. There are no reported channel structures to match the wealth of functional data on the non-voltage-gated members. We determined the structure of the transmembrane regions of the bacterial cyclic nucleotide-regulated channel MlotiK1, a non-voltage-gated 6 TM channel. The structure showed how the S1-S4 domain and its associated linker can serve as a clamp to constrain the gate of the pore and possibly function in concert with ligand-binding domains to regulate the opening of the pore. The structure also led us to hypothesize a new mechanism by which motions of the S6 inner helices can gate the ion conduction pathway at a position along the pore closer to the selectivity filter than the canonical helix bundle crossing.

  1. Software Developers

    Broader source: Energy.gov [DOE]

    Because SEED will provide a common, open-source data framework, software developers will be able to write applications that access the data in a consistent way (with proper permissions), or build functionalities onto the SEED platform in a replicable way.

  2. Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Kao-Kniffin, J.; Woodcroft, B. J.; Carver, S. M.; Bockheim, J. G.; Handelsman, J.; Tyson, G. W.; Hinkel, K. M.; Mueller, C. W.

    2015-12-18

    We examined patterns in soil microbial community composition across a successional gradient of drained lake basins in the Arctic Coastal Plain. Analysis of 16S rRNA gene sequences revealed that methanogens closely related to Candidatus ‘Methanoflorens stordalenmirensis’ were the dominant archaea, comprising >50% of the total archaea at most sites, with particularly high levels in the oldest basins and in the top 57 cm of soil (active and transition layers). Bacterial community composition was more diverse, with lineages from OP11, Actinobacteria, Bacteroidetes, and Proteobacteria found in high relative abundance across all sites. Notably, microbial composition appeared to converge in the activemore » layer, but transition and permafrost layer communities across the sites were significantly different to one another. Microbial biomass using fatty acid-based analysis indicated that the youngest basins had increased abundances of gram-positive bacteria and saprotrophic fungi at higher soil organic carbon levels, while the oldest basins displayed an increase in only the gram-positive bacteria. While this study showed differences in microbial populations across the sites relevant to basin age, the dominance of Candidatus ‘M. stordalenmirensis’ across the chronosequence indicates the potential for changes in local carbon cycling, depending on how these methanogens and associated microbial communities respond to warming temperatures.« less

  3. Thermodynamics of Electron Flow in the Bacterial Deca-heme Cytochrome MtrF

    SciTech Connect (OSTI)

    Breuer, Marian; Zarzycki, Piotr P.; Blumberger, Jochen; Rosso, Kevin M.

    2012-07-01

    Electron transporting multiheme cytochromes are essential to the metabolism of microbes that inhabit soils and carry out important biogeochemical processes. Recently the first crystal structure of a prototype bacterial deca-heme cytochrome (MtrF) has been resolved and its electrochemistry characterized. However, the molecular details of electron conductance along heme chains in the cytochrome are difficult to access via experiment due to the nearly identical chemical nature of the heme cofactors. Here we employ large-scale molecular dynamics simulations to compute the reduction potentials of the ten hemes of MtrF in aqueous solution. We find that as a whole they fall within a range of about 0.3 V in agreement with experiment. Individual reduction potentials give rise to a free energy profile for electron conduction that is approximately symmetric with respect to the center of the protein. Our calculations indicate that there is no significant potential bias along the orthogonal octa- and tetra-heme chains suggesting that under aqueous conditions MtrF is a nearly reversible two-dimensional conductor.

  4. Real-time Bacterial Detection by Single Cell Based Sensors UsingSynchrotron FTIR Spectromicroscopy

    SciTech Connect (OSTI)

    Veiseh, Mandana; Veiseh, Omid; Martin, Michael C.; Bertozzi,Carolyn; Zhang, Miqin

    2005-08-10

    Microarrays of single macrophage cell based sensors weredeveloped and demonstrated for real time bacterium detection bysynchrotron FTIR microscopy. The cells were patterned on gold-SiO2substrates via a surface engineering technique by which the goldelectrodes were immobilized with fibronectin to mediate cell adhesion andthe silicon oxide background were passivated with PEG to resist proteinadsorption and cell adhesion. Cellular morphology and IR spectra ofsingle, double, and triple cells on gold electrodes exposed tolipopolysaccharide (LPS) of different concentrations were compared toreveal the detection capabilities of these biosensors. The single-cellbased sensors were found to generate the most significant IR wave numbervariation and thus provide the highest detection sensitivity. Changes inmorphology and IR spectrum for single cells exposed to LPS were found tobe time- and concentration-dependent and correlated with each other verywell. FTIR spectra from single cell arrays of gold electrodes withsurface area of 25 mu-m2, 100 mu-m2, and 400 mu-m2 were acquired usingboth synchrotron and conventional FTIR spectromicroscopes to study thesensitivity of detection. The results indicated that the developedsingle-cell platform can be used with conventional FTIRspectromicroscopy. This technique provides real-time, label-free, andrapid bacterial detection, and may allow for statistic and highthroughput analyses, and portability.

  5. Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska

    SciTech Connect (OSTI)

    Kao-Kniffin, J.; Woodcroft, B. J.; Carver, S. M.; Bockheim, J. G.; Handelsman, J.; Tyson, G. W.; Hinkel, K. M.; Mueller, C. W.

    2015-12-18

    We examined patterns in soil microbial community composition across a successional gradient of drained lake basins in the Arctic Coastal Plain. Analysis of 16S rRNA gene sequences revealed that methanogens closely related to Candidatus Methanoflorens stordalenmirensis were the dominant archaea, comprising >50% of the total archaea at most sites, with particularly high levels in the oldest basins and in the top 57 cm of soil (active and transition layers). Bacterial community composition was more diverse, with lineages from OP11, Actinobacteria, Bacteroidetes, and Proteobacteria found in high relative abundance across all sites. Notably, microbial composition appeared to converge in the active layer, but transition and permafrost layer communities across the sites were significantly different to one another. Microbial biomass using fatty acid-based analysis indicated that the youngest basins had increased abundances of gram-positive bacteria and saprotrophic fungi at higher soil organic carbon levels, while the oldest basins displayed an increase in only the gram-positive bacteria. While this study showed differences in microbial populations across the sites relevant to basin age, the dominance of Candidatus M. stordalenmirensis across the chronosequence indicates the potential for changes in local carbon cycling, depending on how these methanogens and associated microbial communities respond to warming temperatures.

  6. Guanidino groups greatly enhance the action of antimicrobial peptidomimetics against bacterial cytoplasmic membranes

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Andreev, Konstantin; Bianchi, Christopher; Laursen, Jonas S.; Citterio, Linda; Hein-Kristensen, Line; Gram, Lone; Kuzmenko, Ivan; Olsen, Christian A.; Gidalevitz, David

    2014-05-28

    In this study, antimicrobial peptides or their synthetic mimics are a promising class of potential new antibiotics. Herein we assess the effect of the type of cationic side chain (i.e., guanidino vs. amino groups) on the membrane perturbing mechanism of antimicrobial ?-peptide?-peptoid chimeras. Langmuir monolayers composed of 1,2-dipalmitoyl-sn-glycero-3-phosphatidylglycerol (DPPG) were used to model cytoplasmic membranes of both Gram-positive and Gram-negative bacteria, while lipopolysaccharide Kdo2-lipid A monolayers were mimicking the outer membrane of Gram-negative species. We report the results of the measurements using an array of techniques, including high-resolution synchrotron surface X-ray scattering, epifluorescence microscopy, and in vitro antimicrobial activity tomorestudy the molecular mechanisms of peptidomimetic interaction with bacterial membranes. We found guanidino group-containing chimeras to exhibit greater disruptive activity on DPPG monolayers than the amino group-containing analogues. However, this effect was not observed for lipopolysaccharide monolayers where the difference was negligible. Furthermore, the addition of the nitrobenzoxadiazole fluorophore did not reduce the insertion activity of these antimicrobials into both model membrane systems examined, which may be useful for future cellular localization studies.less

  7. Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Berni Canani, Roberto; Sangwan, Naseer; Stefka, Andrew T.; Nocerino, Rita; Paparo, Lorella; Aitoro, Rosita; Calignano, Antonio; Khan, Aly A.; Gilbert, Jack A.; Nagler, Cathryn R.

    2015-09-22

    Dietary intervention with extensively hydrolyzed casein formula supplemented with Lactobacillus rhamnosus GG (EHCF+LGG) accelerates tolerance acquisition in infants with cow’s milk allergy (CMA). We examined whether this effect is attributable, at least in part, to an influence on the gut microbiota. Fecal samples from healthy controls (n=20) and from CMA infants (n=19) before and after treatment with EHCF with (n=12) and without (n=7) supplementation with LGG were compared by 16S rRNA-based operational taxonomic unit clustering and oligotyping. Differential feature selection and generalized linear model fitting revealed that the CMA infants have a diverse gut microbial community structure dominated by Lachnospiraceaemore » (20.5±9.7%) and Ruminococcaceae (16.2±9.1%). Blautia, Roseburia and Coprococcus were significantly enriched following treatment with EHCF and LGG, but only one genus, Oscillospira, was significantly different between infants that became tolerant and those that remained allergic. However, most tolerant infants showed a significant increase in fecal butyrate levels, and those taxa that were significantly enriched in these samples, Blautia and Roseburia, exhibited specific strain-level demarcations between tolerant and allergic infants. As a result, our data suggest that EHCF+LGG promotes tolerance in infants with CMA, in part, by influencing the strain-level bacterial community structure of the infant gut.« less

  8. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Eloe-Fadrosh, Emiley A.; Paez-Espino, David; Jarett, Jessica; Dunfield, Peter F.; Hedlund, Brian P.; Dekas, Anne E.; Grasby, Stephen E.; Brady, Allyson L.; Dong, Hailiang; Briggs, Brandon R.; et al

    2016-01-27

    We analyse the increasing wealth of metagenomic data collected from diverse environments can lead to the discovery of novel branches on the tree of life. Here we analyse 5.2 Tb of metagenomic data collected globally to discover a novel bacterial phylum (‘Candidatus Kryptonia’) found exclusively in high-temperature pH-neutral geothermal springs. This lineage had remained hidden as a taxonomic ‘blind spot’ because of mismatches in the primers commonly used for ribosomal gene surveys. Genome reconstruction from metagenomic data combined with single-cell genomics results in several high-quality genomes representing four genera from the new phylum. Metabolic reconstruction indicates a heterotrophic lifestyle withmore » conspicuous nutritional deficiencies, suggesting the need for metabolic complementarity with other microbes. Co-occurrence patterns identifies a number of putative partners, including an uncultured Armatimonadetes lineage. The discovery of Kryptonia within previously studied geothermal springs underscores the importance of globally sampled metagenomic data in detection of microbial novelty, and highlights the extraordinary diversity of microbial life still awaiting discovery.« less

  9. sustainable development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    sustainable development - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Fuel Cycle Defense Waste Management Programs Advanced

  10. Communication: Microsecond dynamics of the protein and water affect electron transfer in a bacterial bc{sub 1} complex

    SciTech Connect (OSTI)

    Martin, Daniel R.; Matyushov, Dmitry V.

    2015-04-28

    Cross-membrane electron transport between cofactors localized in proteins of mitochondrial respiration and bacterial photosynthesis is the source of all biological energy. The statistics and dynamics of nuclear fluctuations in these protein/membrane/water heterogeneous systems are critical for their energetic efficiency. The results of 13 ?s of atomistic molecular dynamics simulations of the membrane-bound bc{sub 1} bacterial complex are analyzed here. The reaction is affected by a broad spectrum of nuclear modes, with the slowest dynamics in the range of time-scales ?0.1-1.6 ?s contributing half of the reaction reorganization energy. Two reorganization energies are required to describe protein electron transfer due to dynamical arrest of protein conformations on the observation window. This mechanistic distinction allows significant lowering of activation barriers for reactions in proteins.

  11. A multifactor analysis of fungal and bacterial community structure of the root microbiome of mature Populus deltoides trees

    SciTech Connect (OSTI)

    Shakya, Migun; Gottel, Neil R; Castro Gonzalez, Hector F; Yang, Zamin; Gunter, Lee E; Labbe, Jessy L; Muchero, Wellington; Bonito, Gregory; Vilgalys, Rytas; Tuskan, Gerald A; Podar, Mircea; Schadt, Christopher Warren

    2013-01-01

    Bacterial and fungal communities associated with plant roots are central to the host- health, survival and growth. However, a robust understanding of root-microbiome and the factors that drive host associated microbial community structure have remained elusive, especially in mature perennial plants from natural settings. Here, we investigated relationships of bacterial and fungal communities in the rhizosphere and root endosphere of the riparian tree species Populus deltoides, and the influence of soil parameters, environmental properties (host phenotype and aboveground environmental settings), host plant genotype (Simple Sequence Repeat (SSR) markers), season (Spring vs. Fall) and geographic setting (at scales from regional watersheds to local riparian zones) on microbial community structure. Each of the trees sampled displayed unique aspects to it s associated community structure with high numbers of Operational Taxonomic Units (OTUs) specific to an individual trees (bacteria >90%, fungi >60%). Over the diverse conditions surveyed only a small number of OTUs were common to all samples within rhizosphere (35 bacterial and 4 fungal) and endosphere (1 bacterial and 1 fungal) microbiomes. As expected, Proteobacteria and Ascomycota were dominant in root communities (>50%) while other higher-level phylogenetic groups (Chytridiomycota, Acidobacteria) displayed greatly reduced abundance in endosphere compared to the rhizosphere. Variance partitioning partially explained differences in microbiome composition between all sampled roots on the basis of seasonal and soil properties (4% to 23%). While most variation remains unattributed, we observed significant differences in the microbiota between watersheds (Tennessee vs. North Carolina) and seasons (Spring vs. Fall). SSR markers clearly delineated two host populations associated with the samples taken in TN vs. NC, but overall genotypic distances did not have a significant effect on corresponding communities that could be separated from other measured effects.

  12. Comparing bacterial community composition of healthy and dark spot-affected Siderastrea siderea in Florida and the Caribbean

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Kellogg, Christina A.; Piceno, Yvette M.; Tom, Lauren M.; DeSantis, Todd Z.; Gray, Michael A.; Andersen, Gary L.; Mormile, Melanie R.

    2014-10-07

    Coral disease is one of the major causes of reef degradation. Dark Spot Syndrome (DSS) was described in the early 1990's as brown or purple amorphous areas of tissue on a coral and has since become one of the most prevalent diseases reported on Caribbean reefs. It has been identified in a number of coral species, but there is debate as to whether it is in fact the same disease in different corals. Further, it is questioned whether these macroscopic signs are in fact diagnostic of an infectious disease at all. The most commonly affected species in the Caribbean ismore » the massive starlet coral Siderastrea siderea. We sampled this species in two locations, Dry Tortugas National Park and Virgin Islands National Park. Tissue biopsies were collected from both healthy colonies and those with dark spot lesions. Microbial-community DNA was extracted from coral samples (mucus, tissue, and skeleton), amplified using bacterial-specific primers, and applied to PhyloChip G3 microarrays to examine the bacterial diversity associated with this coral. Samples were also screened for the presence of a fungal ribotype that has recently been implicated as a causative agent of DSS in another coral species, but the amplifications were unsuccessful. S. siderea samples did not cluster consistently based on health state (i.e., normal versus dark spot). Various bacteria, including Cyanobacteria and Vibrios, were observed to have increased relative abundance in the discolored tissue, but the patterns were not consistent across all DSS samples. Overall, our findings do not support the hypothesis that DSS in S. siderea is linked to a bacterial pathogen or pathogens. This dataset provides the most comprehensive overview to date of the bacterial community associated with the scleractinian coral S. siderea.« less

  13. Impact of bacteria and bacterial components on osteogenic and adipogenic differentiation of adipose-derived mesenchymal stem cells

    SciTech Connect (OSTI)

    Fiedler, Tomas; Salamon, Achim; Adam, Stefanie; Herzmann, Nicole; Taubenheim, Jan; Peters, Kirsten

    2013-11-01

    Adult mesenchymal stem cells (MSC) are present in several tissues, e.g. bone marrow, heart muscle, brain and subcutaneous adipose tissue. In invasive infections MSC get in contact with bacteria and bacterial components. Not much is known about how bacterial pathogens interact with MSC and how contact to bacteria influences MSC viability and differentiation potential. In this study we investigated the impact of three different wound infection relevant bacteria, Escherichia coli, Staphylococcus aureus, and Streptococcus pyogenes, and the cell wall components lipopolysaccharide (LPS; Gram-negative bacteria) and lipoteichoic acid (LTA; Gram-positive bacteria) on viability, proliferation, and osteogenic as well as adipogenic differentiation of human adipose tissue-derived mesenchymal stem cells (adMSC). We show that all three tested species were able to attach to and internalize into adMSC. The heat-inactivated Gram-negative E. coli as well as LPS were able to induce proliferation and osteogenic differentiation but reduce adipogenic differentiation of adMSC. Conspicuously, the heat-inactivated Gram-positive species showed the same effects on proliferation and adipogenic differentiation, while its cell wall component LTA exhibited no significant impact on adMSC. Therefore, our data demonstrate that osteogenic and adipogenic differentiation of adMSC is influenced in an oppositional fashion by bacterial antigens and that MSC-governed regeneration is not necessarily reduced under infectious conditions. - Highlights: Staphylococcus aureus, Streptococcus pyogenes and Escherichia coli bind to and internalize into adMSC. Heat-inactivated cells of these bacterial species trigger proliferation of adMSC. Heat-inactivated E. coli and LPS induce osteogenic differentiation of adMSC. Heat-inactivated E. coli and LPS reduce adipogenic differentiation of adMSC. LTA does not influence adipogenic or osteogenic differentiation of adMSC.

  14. Structurally Distinct Bacterial TBC-like GAPs Link Arf GTPase to Rab1 Inactivation to Counteract Host Defenses

    SciTech Connect (OSTI)

    Dong, Na; Zhu, Yongqun; Lu, Qiuhe; Hu, Liyan; Zheng, Yuqing; Shao, Feng

    2012-10-10

    Rab GTPases are frequent targets of vacuole-living bacterial pathogens for appropriate trafficking of the vacuole. Here we discover that bacterial effectors including VirA from nonvacuole Shigella flexneri and EspG from extracellular Enteropathogenic Escherichia coli (EPEC) harbor TBC-like dual-finger motifs and exhibits potent RabGAP activities. Specific inactivation of Rab1 by VirA/EspG disrupts ER-to-Golgi trafficking. S. flexneri intracellular persistence requires VirA TBC-like GAP activity that mediates bacterial escape from autophagy-mediated host defense. Rab1 inactivation by EspG severely blocks host secretory pathway, resulting in inhibited interleukin-8 secretion from infected cells. Crystal structures of VirA/EspG-Rab1-GDP-aluminum fluoride complexes highlight TBC-like catalytic role for the arginine and glutamine finger residues and reveal a 3D architecture distinct from that of the TBC domain. Structure of Arf6-EspG-Rab1 ternary complex illustrates a pathogenic signaling complex that rewires host Arf signaling to Rab1 inactivation. Structural distinctions of VirA/EspG further predict a possible extensive presence of TBC-like RabGAP effectors in counteracting various host defenses.

  15. Nozzle development

    SciTech Connect (OSTI)

    Dodge, F.T.; Dodge, L.G.; Johnson, J.E.

    1989-06-01

    The objective of this program has been the development of experimental techniques and data processing procedures to allow for the characterization of multi-phase fuel nozzles using laboratory tests. Test results were to be used to produce a single value coefficient-of-performance that would predict the performance of the fuel nozzles independent of system application. Several different types of fuel nozzles capable of handling multi-phase fuels have been characterized for: (a) fuel flow rate versus delivery pressure, (b) fuel-air ratio throughout the fuel spray or plume and the effective cone angle of the injector, and (c) fuel drop- or particle-size distribution as a function of fluid properties. Fuel nozzles which have been characterized on both single-phase liquids and multi-phase liquid-solid slurries include a variable-film-thickness nozzle, a commercial coal-water slurry (CWS) nozzle, and four diesel injectors of different geometries (tested on single-phase fluids only). Multi-phase mixtures includes CWS with various coal loadings, surfactant concentrations, and stabilizer concentrations, as well as glass-bead water slurries with stabilizing additives. Single-phase fluids included glycerol-water mixtures to vary the viscosity over a range of 1 to 1500 cP, and alcohol-water mixtures to vary the surface tension from about 22 to 73 dyne/cm. In addition, tests were performed to characterize straight-tube gas-solid nozzles using two differences size distributions of glass beads in air. Standardized procedures have been developed for processing measurements of spray drop-size characteristics and the overall cross-section average drop or particle size. 43 refs., 60 figs., 7 tabs.

  16. Selection for Unequal Densities of Sigma70 Promoter-like Signalsin Different Regions of Large Bacterial Genomes

    SciTech Connect (OSTI)

    Huerta, Araceli M.; Francino, M. Pilar; Morett, Enrique; Collado-Vides, Julio

    2006-03-01

    The evolutionary processes operating in the DNA regions that participate in the regulation of gene expression are poorly understood. In Escherichia coli, we have established a sequence pattern that distinguishes regulatory from nonregulatory regions. The density of promoter-like sequences, that are recognizable by RNA polymerase and may function as potential promoters, is high within regulatory regions, in contrast to coding regions and regions located between convergently-transcribed genes. Moreover, functional promoter sites identified experimentally are often found in the subregions of highest density of promoter-like signals, even when individual sites with higher binding affinity for RNA polymerase exist elsewhere within the regulatory region. In order to investigate the generality of this pattern, we have used position weight matrices describing the -35 and -10 promoter boxes of E. coli to search for these motifs in 43 additional genomes belonging to most established bacterial phyla, after specific calibration of the matrices according to the base composition of the noncoding regions of each genome. We have found that all bacterial species analyzed contain similar promoter-like motifs, and that, in most cases, these motifs follow the same genomic distribution observed in E. coli. Differential densities between regulatory and nonregulatory regions are detectable in most bacterial genomes, with the exception of those that have experienced evolutionary extreme genome reduction. Thus, the phylogenetic distribution of this pattern mirrors that of genes and other genomic features that require weak selection to be effective in order to persist. On this basis, we suggest that the loss of differential densities in the reduced genomes of host-restricted pathogens and symbionts is the outcome of a process of genome degradation resulting from the decreased efficiency of purifying selection in highly structured small populations. This implies that the differential distribution of promoter-like signals between regulatory and nonregulatory regions detected in large bacterial genomes confers a significant, although small, fitness advantage. This study paves the way for further identification of the specific types of selective constraints that affect the organization of regulatory regions and the overall distribution of promoter-like signals through more detailed comparative analyses among closely-related bacterial genomes.

  17. The Siderocalin/Enterobactin Interaction: A Link between Mammalian Immunity and Bacterial Iron Transport

    SciTech Connect (OSTI)

    Meux, Susan C.

    2008-05-12

    The siderophore enterobactin (Ent) is produced by enteric bacteria to mediate iron uptake. Ent scavenges iron and is taken up by the bacteria as the highly stable ferric complex [Fe{sup III}(Ent)]{sup 3-}. This complex is also a specific target of the mammalian innate immune system protein, Siderocalin (Scn), which acts as an anti-bacterial agent by specifically sequestering siderophores and their ferric complexes during infection. Recent literature suggesting that Scn may also be involved in cellular iron transport has increased the importance of understanding the mechanism of siderophore interception and clearance by Scn; Scn is observed to release iron in acidic endosomes and [Fe{sup III}(Ent)]{sup 3-} is known to undergo a change from catecholate to salicylate coordination in acidic conditions, which is predicted to be sterically incompatible with the Scn binding pocket (also referred to as the calyx). To investigate the interactions between the ferric Ent complex and Scn at different pH values, two recombinant forms of Scn with mutations in three residues lining the calyx were prepared: Scn-W79A/R81A and Scn-Y106F. Binding studies and crystal structures of the Scn-W79A/R81A:[Fe{sup III}(Ent)]{sup 3-} and Scn-Y106F:[Fe{sup III}(Ent)]{sup 3-} complexes confirm that such mutations do not affect the overall conformation of the protein but do weaken significantly its affinity for [Fe{sup III}(Ent)]{sup 3-}. Fluorescence, UV-Vis and EXAFS spectroscopies were used to determine Scn/siderophore dissociation constants and to characterize the coordination mode of iron over a wide pH range, in the presence of both mutant proteins and synthetic salicylate analogs of Ent. While Scn binding hinders salicylate coordination transformation, strong acidification results in the release of iron and degraded siderophore. Iron release may therefore result from a combination of Ent degradation and coordination change.

  18. Soil bacterial and fungal community responses to nitrogen addition across soil depth and microhabitat in an arid shrubland

    SciTech Connect (OSTI)

    Mueller, Rebecca C.; Belnap, Jayne; Kuske, Cheryl R.

    2015-09-04

    Arid shrublands are stressful environments, typified by alkaline soils low in organic matter, with biologically-limiting extremes in water availability, temperature, and UV radiation. The widely-spaced plants and interspace biological soil crusts in these regions provide soil nutrients in a localized fashion, creating a mosaic pattern of plant- or crust-associated microhabitats with distinct nutrient composition. With sporadic and limited rainfall, nutrients are primarily retained in the shallow surface soil, patterning biological activity. We examined soil bacterial and fungal community responses to simulated nitrogen (N) deposition in an arid Larrea tridentata-Ambrosia dumosa field experiment in southern Nevada, USA, using high-throughput sequencing of ribosomal RNA genes. To examine potential interactions among the N application, microhabitat and soil depth, we sampled soils associated with shrub canopies and interspace biological crusts at two soil depths (00.5 or 010 cm) across the N-amendment gradient (0, 7, and 15 kg ha1 yr1). We hypothesized that localized compositional differences in soil microbiota would constrain the impacts of N addition to a microhabitat distribution that would reflect highly localized geochemical conditions and microbial community composition. The richness and community composition of both bacterial and fungal communities differed significantly by microhabitat and with soil depth in each microhabitat. Only bacterial communities exhibited significant responses to the N addition. Community composition correlated with microhabitat and depth differences in soil geochemical features. Provided the distinct roles of soil bacteria and fungi in major nutrient cycles, the resilience of fungi and sensitivity of bacteria to N amendments suggests that increased N input predicted for many arid ecosystems could shift nutrient cycling toward pathways driven primarily by fungal communities.

  19. Soil bacterial and fungal community responses to nitrogen addition across soil depth and microhabitat in an arid shrubland

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Mueller, Rebecca C.; Belnap, Jayne; Kuske, Cheryl R.

    2015-09-04

    Arid shrublands are stressful environments, typified by alkaline soils low in organic matter, with biologically-limiting extremes in water availability, temperature, and UV radiation. The widely-spaced plants and interspace biological soil crusts in these regions provide soil nutrients in a localized fashion, creating a mosaic pattern of plant- or crust-associated microhabitats with distinct nutrient composition. With sporadic and limited rainfall, nutrients are primarily retained in the shallow surface soil, patterning biological activity. We examined soil bacterial and fungal community responses to simulated nitrogen (N) deposition in an arid Larrea tridentata-Ambrosia dumosa field experiment in southern Nevada, USA, using high-throughput sequencing ofmore » ribosomal RNA genes. To examine potential interactions among the N application, microhabitat and soil depth, we sampled soils associated with shrub canopies and interspace biological crusts at two soil depths (0–0.5 or 0–10 cm) across the N-amendment gradient (0, 7, and 15 kg ha–1 yr–1). We hypothesized that localized compositional differences in soil microbiota would constrain the impacts of N addition to a microhabitat distribution that would reflect highly localized geochemical conditions and microbial community composition. The richness and community composition of both bacterial and fungal communities differed significantly by microhabitat and with soil depth in each microhabitat. Only bacterial communities exhibited significant responses to the N addition. Community composition correlated with microhabitat and depth differences in soil geochemical features. Provided the distinct roles of soil bacteria and fungi in major nutrient cycles, the resilience of fungi and sensitivity of bacteria to N amendments suggests that increased N input predicted for many arid ecosystems could shift nutrient cycling toward pathways driven primarily by fungal communities.« less

  20. Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens

    SciTech Connect (OSTI)

    Srinivasan, Ramya; Karaoz, Ulas; Volegova, Marina; MacKichan, Joanna; Kato-Maeda, Midori; Miller, Steve; Nadarajan, Rohan; Brodie, Eoin L.; Lynch, Susan V.; Heimesaat, Markus M.

    2015-02-06

    According to World Health Organization statistics of 2011, infectious diseases remain in the top five causes of mortality worldwide. However, despite sophisticated research tools for microbial detection, rapid and accurate molecular diagnostics for identification of infection in humans have not been extensively adopted. Time-consuming culture-based methods remain to the forefront of clinical microbial detection. The 16S rRNA gene, a molecular marker for identification of bacterial species, is ubiquitous to members of this domain and, thanks to ever-expanding databases of sequence information, a useful tool for bacterial identification. In this study, we assembled an extensive repository of clinical isolates (n = 617), representing 30 medically important pathogenic species and originally identified using traditional culture-based or non-16S molecular methods. This strain repository was used to systematically evaluate the ability of 16S rRNA for species level identification. To enable the most accurate species level classification based on the paucity of sequence data accumulated in public databases, we built a Naïve Bayes classifier representing a diverse set of high-quality sequences from medically important bacterial organisms. We show that for species identification, a model-based approach is superior to an alignment based method. Overall, between 16S gene based and clinical identities, our study shows a genus-level concordance rate of 96% and a species-level concordance rate of 87.5%. We point to multiple cases of probable clinical misidentification with traditional culture based identification across a wide range of gram-negative rods and gram-positive cocci as well as common gram-negative cocci.

  1. Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Srinivasan, Ramya; Karaoz, Ulas; Volegova, Marina; MacKichan, Joanna; Kato-Maeda, Midori; Miller, Steve; Nadarajan, Rohan; Brodie, Eoin L.; Lynch, Susan V.; Heimesaat, Markus M.

    2015-02-06

    According to World Health Organization statistics of 2011, infectious diseases remain in the top five causes of mortality worldwide. However, despite sophisticated research tools for microbial detection, rapid and accurate molecular diagnostics for identification of infection in humans have not been extensively adopted. Time-consuming culture-based methods remain to the forefront of clinical microbial detection. The 16S rRNA gene, a molecular marker for identification of bacterial species, is ubiquitous to members of this domain and, thanks to ever-expanding databases of sequence information, a useful tool for bacterial identification. In this study, we assembled an extensive repository of clinical isolates (n =more » 617), representing 30 medically important pathogenic species and originally identified using traditional culture-based or non-16S molecular methods. This strain repository was used to systematically evaluate the ability of 16S rRNA for species level identification. To enable the most accurate species level classification based on the paucity of sequence data accumulated in public databases, we built a Naïve Bayes classifier representing a diverse set of high-quality sequences from medically important bacterial organisms. We show that for species identification, a model-based approach is superior to an alignment based method. Overall, between 16S gene based and clinical identities, our study shows a genus-level concordance rate of 96% and a species-level concordance rate of 87.5%. We point to multiple cases of probable clinical misidentification with traditional culture based identification across a wide range of gram-negative rods and gram-positive cocci as well as common gram-negative cocci.« less

  2. An X-ray Absorption Fine Structure study of Au adsorbed onto the non-metabolizing cells of two soil bacterial species

    SciTech Connect (OSTI)

    Song, Zhen; Kenney, Janice P.L.; Fein, Jeremy B.; Bunker, Bruce A.

    2015-02-09

    Gram-positive and Gram-negative bacterial cells can remove Au from Au(III)-chloride solutions, and the extent of removal is strongly pH dependent. In order to determine the removal mechanisms, X-ray Absorption Fine Structure (XAFS) spectroscopy experiments were conducted on non-metabolizing biomass of Bacillus subtilis and Pseudomonas putida with fixed Au(III) concentrations over a range of bacterial concentrations and pH values. X-ray Absorption Near Edge Structure (XANES) and Extended X-ray Absorption Fine Structure (EXAFS) data on both bacterial species indicate that more than 90% of the Au atoms on the bacterial cell walls were reduced to Au(I). In contrast to what has been observed for Au(III) interaction with metabolizing bacterial cells, no Au(0) or Au-Au nearest neighbors were observed in our experimental systems. All of the removed Au was present as adsorbed bacterial surface complexes. For both species, the XAFS data suggest that although Au-chloride-hydroxide aqueous complexes dominate the speciation of Au in solution, Au on the bacterial cell wall is characterized predominantly by binding of Au atoms to sulfhydryl functional groups and amine and/or carboxyl functional groups, and the relative importance of the sulfhydryl groups increases with increasing pH and with decreasing Au loading. The XAFS data for both microorganism species suggest that adsorption is the first step in the formation of Au nanoparticles by bacteria, and the results enhance our ability to account for the behavior of Au in bacteria-bearing geologic systems.

  3. Engineered enzymatically active bacteriophages and methods of uses thereof

    Office of Scientific and Technical Information (OSTI)

    (Patent) | SciTech Connect Engineered enzymatically active bacteriophages and methods of uses thereof Citation Details In-Document Search Title: Engineered enzymatically active bacteriophages and methods of uses thereof The present invention provides engineered bacteriophages that express at least one biofilm degrading enzyme on their surface and uses thereof for degrading bacterial biofilms. The invention also provides genetically engineered bacteriophages expressing the biofilm degrading

  4. Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Bælum, Jacob; Taş, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Philipp; Priemé, Anders

    2015-04-30

    The active layer of soil overlaying permafrost in the Arctic is subjected to dramatic annual changes in temperature and soil chemistry, which likely affect bacterial activity and community structure. We studied seasonal variations in the bacterial community of active layer soil from Svalbard (78°N) by co-extracting DNA and RNA from 12 soil cores collected monthly over a year. PCR amplicons of 16S rRNA genes (DNA) and reverse transcribed transcripts (cDNA) were quantified and sequenced to test for the effect of low winter temperature and seasonal variation in concentration of easily degradable organic matter on the bacterial communities. The copy numbermore » of 16S rRNA genes and transcripts revealed no distinct seasonal changes indicating potential bacterial activity during winter despite soil temperatures well below -10°C. Multivariate statistical analysis of the bacterial diversity data (DNA and cDNA libraries) revealed a season-based clustering of the samples, and, e.g., the relative abundance of potentially active Cyanobacteria peaked in June and Alphaproteobacteria increased over the summer and then declined from October to November. The structure of the bulk (DNA-based) community was significantly correlated with pH and dissolved organic carbon, while the potentially active (RNA-based) community structure was not significantly correlated with any of the measured soil parameters. A large fraction of the 16S rRNA transcripts was assigned to nitrogen-fixing bacteria (up to 24% in June) and phototrophic organisms (up to 48% in June) illustrating the potential importance of nitrogen fixation in otherwise nitrogen poor Arctic ecosystems and of phototrophic bacterial activity on the soil surface.« less

  5. Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses

    SciTech Connect (OSTI)

    Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Blum, Jacob; Ta?, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Philipp; Priem, Anders

    2015-04-30

    The active layer of soil overlaying permafrost in the Arctic is subjected to dramatic annual changes in temperature and soil chemistry, which likely affect bacterial activity and community structure. We studied seasonal variations in the bacterial community of active layer soil from Svalbard (78N) by co-extracting DNA and RNA from 12 soil cores collected monthly over a year. PCR amplicons of 16S rRNA genes (DNA) and reverse transcribed transcripts (cDNA) were quantified and sequenced to test for the effect of low winter temperature and seasonal variation in concentration of easily degradable organic matter on the bacterial communities. The copy number of 16S rRNA genes and transcripts revealed no distinct seasonal changes indicating potential bacterial activity during winter despite soil temperatures well below -10C. Multivariate statistical analysis of the bacterial diversity data (DNA and cDNA libraries) revealed a season-based clustering of the samples, and, e.g., the relative abundance of potentially active Cyanobacteria peaked in June and Alphaproteobacteria increased over the summer and then declined from October to November. The structure of the bulk (DNA-based) community was significantly correlated with pH and dissolved organic carbon, while the potentially active (RNA-based) community structure was not significantly correlated with any of the measured soil parameters. A large fraction of the 16S rRNA transcripts was assigned to nitrogen-fixing bacteria (up to 24% in June) and phototrophic organisms (up to 48% in June) illustrating the potential importance of nitrogen fixation in otherwise nitrogen poor Arctic ecosystems and of phototrophic bacterial activity on the soil surface.

  6. Framework for a physical map of the human 22q13 region using bacterial artificial chromosomes (BACs)

    SciTech Connect (OSTI)

    Schmitt, H.; Kim, Ung-Jin; Slepak, T.

    1996-04-01

    Detailed physical maps of entire chromosomes based on combined genetic, cytogenetic, and structural information are essential components for positional cloning and genomic sequencing. Despite the wealth of genetic information of the known diseases in the chromosome 22q13 region, the construction of a detailed physical map of the terminal region is difficult due to the sparsity of the genetic markers. We present here a map of bacterial artificial chromosome (BAC) contigs that cover a number of genetic loci in the 22q13 region. One hundred thirty-six BACs with an average insert size of 140 kb are assembled into 35 contigs defined by 64 markers in 22q13-qter. Twenty-three anonymous markers are now linked to the previously mapped genetic anchor points. 55 refs., 4 figs., 3 tabs.

  7. Energy Frontier Research Centers

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    a pore, the impact of mineral surfaces on bacterial survival, and the influence of biofilm formation on the movement of CO 2 . In addition, they collected field data that...

  8. Insights into substrate specificity of NlpC/P60 cell wall hydrolases containing bacterial SH3 domains

    DOE Public Access Gateway for Energy & Science Beta (PAGES Beta)

    Xu, Qingping; Mengin-Lecreulx, Dominique; Liu, Xueqian W.; Patin, Delphine; Farr, Carol L.; Grant, Joanna C.; Chiu, Hsiu -Ju; Jaroszewski, Lukasz; Knuth, Mark W.; Godzik, Adam; et al

    2015-09-15

    Bacterial SH3 (SH3b) domains are commonly fused with papain-like Nlp/P60 cell wall hydrolase domains. To understand how the modular architecture of SH3b and NlpC/P60 affects the activity of the catalytic domain, three putative NlpC/P60 cell wall hydrolases were biochemically and structurally characterized. In addition, these enzymes all have γ-d-Glu-A2pm (A2pm is diaminopimelic acid) cysteine amidase (ordl-endopeptidase) activities but with different substrate specificities. One enzyme is a cell wall lysin that cleaves peptidoglycan (PG), while the other two are cell wall recycling enzymes that only cleave stem peptides with an N-terminall-Ala. Their crystal structures revealed a highly conserved structure consisting ofmore » two SH3b domains and a C-terminal NlpC/P60 catalytic domain, despite very low sequence identity. Interestingly, loops from the first SH3b domain dock into the ends of the active site groove of the catalytic domain, remodel the substrate binding site, and modulate substrate specificity. Two amino acid differences at the domain interface alter the substrate binding specificity in favor of stem peptides in recycling enzymes, whereas the SH3b domain may extend the peptidoglycan binding surface in the cell wall lysins. Remarkably, the cell wall lysin can be converted into a recycling enzyme with a single mutation.Peptidoglycan is a meshlike polymer that envelops the bacterial plasma membrane and bestows structural integrity. Cell wall lysins and recycling enzymes are part of a set of lytic enzymes that target covalent bonds connecting the amino acid and amino sugar building blocks of the PG network. These hydrolases are involved in processes such as cell growth and division, autolysis, invasion, and PG turnover and recycling. To avoid cleavage of unintended substrates, these enzymes have very selective substrate specificities. Our biochemical and structural analysis of three modular NlpC/P60 hydrolases, one lysin, and two recycling enzymes, show that they may have evolved from a common molecular architecture, where the substrate preference is modulated by local changes. These results also suggest that new pathways for recycling PG turnover products, such as tracheal cytotoxin, may have evolved in bacteria in the human gut microbiome that involve NlpC/P60 cell wall hydrolases.« less

  9. Teacher Development Programs

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Teacher Development Programs LLNL Teacher Development LLNL's Science Education Program provides professional development instruction to in-service and pre-service middle school, high school, and community college science teachers

  10. Clean Energy Development Fund

    Broader source: Energy.gov [DOE]

    Vermont's Clean Energy Development Fund (CEDF) was established in 2005 to promote the development and deployment of cost-effective and environmentally sustainable electric power and thermal...

  11. ORISE: Web Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Web Development As computer-based applications become increasingly popular for the delivery of health care training and information, the need for Web development in support of ...

  12. Comparing bacterial community composition of healthy and dark spot-affected Siderastrea siderea in Florida and the Caribbean

    SciTech Connect (OSTI)

    Kellogg, Christina A.; Piceno, Yvette M.; Tom, Lauren M.; DeSantis, Todd Z.; Gray, Michael A.; Andersen, Gary L.; Mormile, Melanie R.

    2014-10-07

    Coral disease is one of the major causes of reef degradation. Dark Spot Syndrome (DSS) was described in the early 1990's as brown or purple amorphous areas of tissue on a coral and has since become one of the most prevalent diseases reported on Caribbean reefs. It has been identified in a number of coral species, but there is debate as to whether it is in fact the same disease in different corals. Further, it is questioned whether these macroscopic signs are in fact diagnostic of an infectious disease at all. The most commonly affected species in the Caribbean is the massive starlet coral Siderastrea siderea. We sampled this species in two locations, Dry Tortugas National Park and Virgin Islands National Park. Tissue biopsies were collected from both healthy colonies and those with dark spot lesions. Microbial-community DNA was extracted from coral samples (mucus, tissue, and skeleton), amplified using bacterial-specific primers, and applied to PhyloChip G3 microarrays to examine the bacterial diversity associated with this coral. Samples were also screened for the presence of a fungal ribotype that has recently been implicated as a causative agent of DSS in another coral species, but the amplifications were unsuccessful. S. siderea samples did not cluster consistently based on health state (i.e., normal versus dark spot). Various bacteria, including Cyanobacteria and Vibrios, were observed to have increased relative abundance in the discolored tissue, but the patterns were not consistent across all DSS samples. Overall, our findings do not support the hypothesis that DSS in S. siderea is linked to a bacterial pathogen or pathogens. This dataset provides the most comprehensive overview to date of the bacterial community associated with the scleractinian coral S. siderea.

  13. Options for developing countries in mining development

    SciTech Connect (OSTI)

    Walrond, G.W.; Kumar, R.

    1985-01-01

    This book is a study of the issues that developing countries face in planning and implementing mineral development, taking as case studies Botswana, Sierra Leone, Zambia, Tanzania, Malaysia, Papua New Guinea and the developed states of Quebec and Western Australia. The authors consider the major aspects of the matter including organization and administration; regulation; taxation and surplus distribution; the dynamics of such instruments as royalty, rent resource tax and capital allowances under various cost/price scenarios; and selected mining agreements and their key provisions. They stress throughout the need for foreign investment while maximizing the economic benefits reaped from exhaustible resources.

  14. Geothermal development opportunities in developing countries

    SciTech Connect (OSTI)

    Kenkeremath, D.C.

    1989-11-16

    This report is the proceedings of the Seminar on geothermal development opportunities in developing countries, sponsored by the Geothermal Division of the US Department of Energy and presented by the National Geothermal Association. The overall objectives of the seminar are: (1) Provide sufficient information to the attendees to encourage their interest in undertaking more geothermal projects within selected developing countries, and (2) Demonstrate the technological leadership of US technology and the depth of US industry experience and capabilities to best perform on these projects.

  15. Context-dependent protein folding of a virulence peptide in the bacterial and host environments: structure of an SycHYopH chaperoneeffector complex

    SciTech Connect (OSTI)

    Vujanac, Milos; Stebbins, C. Erec, E-mail: stebbins@rockefeller.edu [The Rockefeller University, New York, NY 10065 (United States)

    2013-04-01

    The structure of a SycHYopH chaperoneeffector complex from Yersinia reveals the bacterial state of a protein that adopts different folds in the host and pathogen environments. Yersinia pestis injects numerous bacterial proteins into host cells through an organic nanomachine called the type 3 secretion system. One such substrate is the tyrosine phosphatase YopH, which requires an interaction with a cognate chaperone in order to be effectively injected. Here, the first crystal structure of a SycHYopH complex is reported, determined to 1.9 resolution. The structure reveals the presence of (i) a nonglobular polypeptide in YopH, (ii) a so-called ?-motif in YopH and (iii) a conserved hydrophobic patch in SycH that recognizes the ?-motif. Biochemical studies establish that the ?-motif is critical to the stability of this complex. Finally, since previous work has shown that the N-terminal portion of YopH adopts a globular fold that is functional in the host cell, aspects of how this polypeptide adopts radically different folds in the host and in the bacterial environments are analysed.

  16. Final Report Grant No. DE-FG02-98ER20307 Lipopolysaccharide Structures and Genes Required for Root Nodule Development August 1, 2004 to July 31, 2008

    SciTech Connect (OSTI)

    Noel, K. Dale

    2008-12-07

    This project dealt with the plant-bacterial symbiosis that gives rise to root nodules on leguminous plants in which the bacteria carry out nitrogen fixation. Nitrogen fixation, like carbon dioxide fixation, is essential for life on planet earth, and this symbiosis is estimated to account for half of all nitrogen fixed on land. Aside from being important for the sustenance of global life, this ability allows legumes to grow without nitrogen fertilizers. Basic studies such as this project are aimed at understanding the symbiosis well enough that eventually it can be engineered into important crop species so that they no longer depend on nitrogen fertilizer for growth. The production and distribution of excessive fertilizer needed for optimal crop yields is responsible for a significant portion of the energy costs in agriculture. The specific aims of this work were to further the understanding of a bacterial factor that is essential for the symbiotic infection process. This factor is a bacterial surface molecule, lipopolysaccharide O antigen. In this project we showed that, not only the presence, but the specific structure of this molecule is crucial for infection. Although the success of bacterial infections in many pathogenic and mutualistic interactions have been shown to depend on intact O antigen, it has been very rare to establish that specific features of the structure are important. One of the features in this case is the presence of one additional methyl group on one sugar in the O antigen. It is very surprising that such a minor change should have an observable effect. This work sets the stage for biochemical studies of possible plant receptors that may be involved. During the course of this grant period, we developed a method of testing the importance of this bacterial component at stages of nodule development beyond the step that is blocked by null mutation. The method works adequately for this purpose and is being improved. It has implications for testing the roles of other important bacterial factors at multiple stages of nodule development. The project also investigated the biosynthesis of this bacterial factor. It has a complex structure and the first accomplishment was the determination of the sequences of genetic regions known to be important. Next the discovered genes were mutated to identify the 26 that are required for its synthesis. In addition, six others were discovered that are believed to change its structure under various environmental conditions. By studying mutants affected in specific genes, genes were associated with each of the predicted steps in the biosynthesis. Current work is testing the predicted biosynthetic model with studies conducted in vitro with bacterial extracts. Overall, the work funded by this grant establishes this system as a model for host-bacterial interactions based on specific polysaccharide structure. All areas that are needed for a comprehensive model have been significantly advanced: the biological function, the structural features that are crucial, the complete set of bacterial genes involved, and a model for the biosynthesis.

  17. SES CANDIDATE DEVELOPMENT PROGRAM

    Energy Savers [EERE]

    SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) DOE F 360.1 (11-03) Executive Development Plan (EDP) Name: Title: Organization: Office: RATIONALE FOR PLAN: APPROVALS: Candidate Signature: Date: Supervisor: Date: Mentor: Date: SES Candidate Development Program Manager: Date: DOE Executive Resources Board: Date: 1 U.S. DEPARTMENT OF ENERGY DOE F 360.1 (11-03) SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) Executive Development Plan (EDP) NAME OF SES CANDIDATE:

  18. Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants

    SciTech Connect (OSTI)

    Berni Canani, Roberto; Sangwan, Naseer; Stefka, Andrew T.; Nocerino, Rita; Paparo, Lorella; Aitoro, Rosita; Calignano, Antonio; Khan, Aly A.; Gilbert, Jack A.; Nagler, Cathryn R.

    2015-09-22

    Dietary intervention with extensively hydrolyzed casein formula supplemented with Lactobacillus rhamnosus GG (EHCF+LGG) accelerates tolerance acquisition in infants with cow’s milk allergy (CMA). We examined whether this effect is attributable, at least in part, to an influence on the gut microbiota. Fecal samples from healthy controls (n=20) and from CMA infants (n=19) before and after treatment with EHCF with (n=12) and without (n=7) supplementation with LGG were compared by 16S rRNA-based operational taxonomic unit clustering and oligotyping. Differential feature selection and generalized linear model fitting revealed that the CMA infants have a diverse gut microbial community structure dominated by Lachnospiraceae (20.5±9.7%) and Ruminococcaceae (16.2±9.1%). Blautia, Roseburia and Coprococcus were significantly enriched following treatment with EHCF and LGG, but only one genus, Oscillospira, was significantly different between infants that became tolerant and those that remained allergic. However, most tolerant infants showed a significant increase in fecal butyrate levels, and those taxa that were significantly enriched in these samples, Blautia and Roseburia, exhibited specific strain-level demarcations between tolerant and allergic infants. As a result, our data suggest that EHCF+LGG promotes tolerance in infants with CMA, in part, by influencing the strain-level bacterial community structure of the infant gut.

  19. Comparison of availability of copper(II) complexes with organic ligands to bacterial cells and to chitin

    SciTech Connect (OSTI)

    Vasconcelos, M.T.S.D.; Azenha, M.A.O.; Cabral, J.P.S.

    1997-10-01

    Bacterial cells or chitin were exposed to solutions with 100 {micro}M total but only 5 {micro}M free copper, due to the presence of a proper concentration of proline, lysine, cysteine, or ethylenediamine tetraacetate (EDTA). The influence of the nature and concentration of the particles and soluble ligands, on the sorption and on the desorption of the copper, at pH 6.50 and 25.0 C, was investigated. The metal sorbed by the particles and that left in the solution were measured by atomic absorption spectrometry, after different periods of contact between particles and solution. The interpretation of the results was based on the copper(II) speciation calculated through equilibrium approaches applied to homogeneous or heterogeneous systems. A significant fraction of copper bound to the organic ligands was displaced to the bacteria or chitin, and the extent of chemical reaction depended on the nature of both the soluble (or leaving) ligands and sites on the particle surface (or entering ligands), as expected by the equilibrium theory. But with chitin, the uptake of copper in the presence of cysteine or EDTA was higher than expected, which may be due to the adsorption of the soluble copper complexes on the particle surface. In consequence of a competition between soluble and particulate ligands (cells or chitin), the free copper(II) concentration decreased in the solution, even in the presence of very strong chelators. The results indicate that copper availability is not a simple function of the initial free copper concentration in the solution. Desorption of the previously fixed copper, originated by free soluble ligands indicated that the sorption of copper was quasireversible for both particles, though a larger dismissal of the equilibrium position occurred for the cells, probably due to their biological activity.

  20. Hanford Site Development Plan

    SciTech Connect (OSTI)

    Rinne, C.A.; Curry, R.H.; Hagan, J.W.; Seiler, S.W.; Sommer, D.J. ); Yancey, E.F. )

    1990-01-01

    The Hanford Site Development Plan (Site Development Plan) is intended to guide the short- and long-range development and use of the Hanford Site. All acquisition, development, and permanent facility use at the Hanford Site will conform to the approved plan. The Site Development Plan also serves as the base document for all subsequent studies that involve use of facilities at the Site. This revision is an update of a previous plan. The executive summary presents the highlights of the five major topics covered in the Site Development Plan: general site information, existing conditions, planning analysis, Master Plan, and Five-Year Plan. 56 refs., 67 figs., 31 tabs.

  1. DEVELOPING STATE POLICIES SUPPORTIVE OF BIOENERGY DEVELOPMENT

    SciTech Connect (OSTI)

    Kathryn Baskin

    2004-10-31

    Working within the context of the Southern States Biobased Alliance (SSBA) and with officials in each state, the Southern States Energy Board (SSEB) is identifying bioenergy-related policies and programs within each state to determine their impact on the development, deployment or use of bioenergy. In addition, SSEB will determine which policies have impacted industry's efforts to develop, deploy or use biobased technologies or products. As a result, SSEB will work with the Southern States Biobased Alliance to determine how policy changes might address any negative impacts or enhance positive impacts. In addition to analysis of domestic policies and programs, this project will include the development of a U.S.-Brazil Biodiesel Pilot Project. The purpose of this effort is to promote and facilitate the commercialization of biodiesel and bioenergy production and demand in Brazil.

  2. DEVELOPING STATE POLICIES SUPPORTIVE OF BIOENERGY DEVELOPMENT

    SciTech Connect (OSTI)

    Kathryn Baskin

    2005-04-30

    Working within the context of the Southern States Biobased Alliance (SSBA) and with officials in each state, the Southern States Energy Board (SSEB) is identifying bioenergy-related policies and programs within each state to determine their impact on the development, deployment or use of bioenergy. In addition, SSEB will determine which policies have impacted industry's efforts to develop, deploy or use biobased technologies or products. As a result, SSEB will work with the Southern States Biobased Alliance to determine how policy changes might address any negative impacts or enhance positive impacts. In addition to analysis of domestic policies and programs, this project will include the development of a U.S.-Brazil Biodiesel Pilot Project. The purpose of this effort is to promote and facilitate the commercialization of biodiesel and bioenergy production and demand in Brazil.

  3. Bacterial extracellular lignin peroxidase

    DOE Patents [OSTI]

    Crawford, Donald L. (Moscow, ID); Ramachandra, Muralidhara (Wilmington, DE)

    1993-01-01

    DNA constructs are provided for the production of Streptomyces lignin peroxidase. The enzyme finds use in the degradation of lignin and oxidation of organic substrates.

  4. Bacterial Sulfur Storage Globules

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    by I. J. Pickering and G. N. George Sulfur is essential for all life, but it plays a particularly central role in the metabolism of many anaerobic microorganisms. Prominent among these are the sulfide-oxidizing bacteria that oxidize sulfide (S2-) to sulfate (SO42-). Many of these organisms can store elemental sulfur (S0) in "globules" for use when food is in short supply (Fig. 1). The chemical nature of the sulfur in these globules has been an enigma since they were first described as

  5. Bacterial extracellular lignin peroxidase

    DOE Patents [OSTI]

    Crawford, D.L.; Ramachandra, M.

    1993-08-03

    DNA constructs are provided for the production of Streptomyces lignin peroxidase. The enzyme finds use in the degradation of lignin and oxidation of organic substrates.

  6. Developing Alaskan Sustainable Housing

    Broader source: Energy.gov [DOE]

    The Association of Alaska Housing Authorities is holding a 3-day training event for housing development professionals titled Developing Alaskan Sustainable Housing (DASH). This is a unique...

  7. Mechanisms in Plant Development

    SciTech Connect (OSTI)

    Hake, Sarah

    2013-08-21

    This meeting has been held every other year for the past twenty-two years and is the only regularly held meeting focused specifically on plant development. Topics covered included: patterning in developing tissues; short and long distance signaling; differentiation of cell types; the role of epigenetics in development; evolution; growth.

  8. Crystal structure of a tetrameric GDP-D-mannose 4,6-dehydratase from a bacterial GDP-D-rhamnose biosynthetic pathway

    SciTech Connect (OSTI)

    Webb, N.A.; Mulichak, A.M.; Lam, J.S.; Rocchetta, H.L.; Garavito, R.M.

    2010-03-08

    D-Rhamnose is a rare 6-deoxy monosaccharide primarily found in the lipopolysaccharide of pathogenic bacteria, where it is involved in host-bacterium interactions and the establishment of infection. The biosynthesis of D-rhamnose proceeds through the conversion of GDP-D-mannose by GDP-D-mannose 4,6-dehydratase (GMD) to GDP-4-keto-6-deoxymannose, which is subsequently reduced to GDP-D-rhamnose by a reductase. We have determined the crystal structure of GMD from Pseudomonas aeruginosa in complex with NADPH and GDP. GMD belongs to the NDP-sugar modifying subfamily of the short-chain dehydrogenase/reductase (SDR) enzymes, all of which exhibit bidomain structures and a conserved catalytic triad (Tyr-XXX-Lys and Ser/Thr). Although most members of this enzyme subfamily display homodimeric structures, this bacterial GMD forms a tetramer in the same fashion as the plant MUR1 from Arabidopsis thaliana. The cofactor binding sites are adjoined across the tetramer interface, which brings the adenosyl phosphate moieties of the adjacent NADPH molecules to within 7 {angstrom} of each other. A short peptide segment (Arg35-Arg43) stretches into the neighboring monomer, making not only protein-protein interactions but also hydrogen bonding interactions with the neighboring cofactor. The interface hydrogen bonds made by the Arg35-Arg43 segment are generally conserved in GMD and MUR1, and the interacting residues are highly conserved among the sequences of bacterial and eukaryotic GMDs. Outside of the Arg35-Arg43 segment, residues involved in tetrameric contacts are also quite conserved across different species. These observations suggest that a tetramer is the preferred, and perhaps functionally relevant, oligomeric state for most bacterial and eukaryotic GMDs.

  9. SES Executive Development

    Broader source: Energy.gov [DOE]

    Development continues once an individual enters into the SES. Faced with constant challenges, changing technologies and a fluid environment, executives need to pursue ongoing professional executive development. It is crucial that executives continue to strengthen and reinforce their Executive Core Qualifications (ECQs), skills and knowledge. http://www.opm.gov/ses/executive_development/index.asp Federal agencies are required by law (Title 5, U.S. Code, Section 3396) to establish programs for the continuing development of senior executives. DOE’s Office of Learning & Workforce Development is available to assist you in determining a course of action your executive development. They have a guidebook that “contains descriptions of over 350 courses, offered by 56 colleges and universities throughout the continental United States as well as by the Office of Personnel Management.”

  10. TRANSIMS Interface Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    transims TRANSIMS Interface Development TRACC RESEARCH Computational Fluid Dynamics Computational Structural Mechanics Transportation Systems Modeling TRANSIMS Studio (Figure 1) has been developed by TRACC for the TRANSIMS community as part of the TRANSIMS Open Source project. It provides an integrated development environment (IDE) for TRANSIMS by combining a number of components that work seamlessly with each other. The visible part of the IDE is the graphical user interface (GUI) that allows

  11. ORISE: Web Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Web Development As computer-based applications become increasingly popular for the delivery of health care training and information, the need for Web development in support of these tools continues to grow. The Oak Ridge Institute for Science and Education (ORISE) provides Web development capabilities to government agencies and organizations interested in converting training and education programs based on traditional means of communication into a variety of tools that suit the technology skills

  12. WINDExchange: Wind Economic Development

    Wind Powering America (EERE)

    Development WINDExchange provides software applications and publications to help individuals, developers, local governments, and utilities make decisions about wind power. Projecting costs and benefits of new installations, including the economic development impacts created, is a key element in looking at potential wind applications. Communities, states, regions, job markets (i.e., construction, operations and maintenance), the tax base, tax revenues, and others can be positively affected. These

  13. Blind shaft development

    SciTech Connect (OSTI)

    Fiscor, S.

    2009-02-15

    The article discusses how Shaft Drillers International (SDI) is breaking new ground in shaft development and ground stabilization. Techniques of blind shaft drilling and raise bore shaft development developed by SDI are briefly explained. An associated company, Coastal Drilling East, deals with all types of ground improvement such as pre-grouting work for shafts, grouting of poor soil and water leaks into the mine. 3 photos.

  14. Regional Economic Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Regional Economic Development Regional Economic Development Supporting companies in every stage of development through access to technology, technical assistance or investment Questions Richard P. Feynman Center for Innovation Regional Programs (505) 665-9090 New Mexico Small Business Assistance Email Venture Acceleration Fund Email DisrupTECH Email SBIR/STTR Email FCI facilitates commercialization in New Mexico to accelerate and enhance our efforts to convert federal and state research

  15. Bioenergy for Sustainable Development

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Gerard J. Ostheimer, Ph.D. Global Lead Sustainable Bioenergy High-Impact Opportunity Sustainable Energy For All BIOENERGY FOR SUSTAINABLE DEVELOPMENT Overview * Energy poverty is widespread and prevents economic development * The international development community is beginning to act * Momentum is building to grow the bioeconomy across the globe Energy Poverty: Statistics * 1.2 Billion people lack access to modern energy services - 0.5 Billion in sub-Saharan Africa * 2.7 Billion people lack

  16. Insights from a Developer

    Office of Environmental Management (EM)

    INSIGHTS FROM A DEVELOPER JENNIFER BREDT DEVELOPMENT MANAGER RES Americas Inc. OCTOBER 26, 2010 AGENDA * INTRODUCTION AND RES OVERVIEW * GROWTH OF THE WIND INDUSTRY IN THE US * CHALLENGES CURRENTLY FACING THE INDUSTRY * WHERE WE ARE HEADED ABOUT - RES Americas Inc. CURRENT CHALLENGES THE FUTURE GROWTH YEARS OVERVIEW * Leader in wind power development and construction  Established in US in 1997 in Tehachapi, CA; UK parent active in wind since 1982  3,946 MW of completed construction

  17. Sandia Energy - Advanced Research & Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Advanced Research & Development Home Stationary Power Energy Conversion Efficiency Solar Energy Photovoltaics Advanced Research & Development Advanced Research & DevelopmentCoryne...

  18. Wineagle Developers | Open Energy Information

    Open Energy Info (EERE)

    Developers Jump to: navigation, search Name: Wineagle Developers Place: Sacramento, California Zip: 95814 Sector: Geothermal energy Product: Geothermal developer in...

  19. Long Range Development Plan

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    scientific missions. Science drives the Lab's development. LRDPs establish a framework of land-use principles and policies to guide future growth and change through 2025. The plan...

  20. Requirements for Wind Development

    Broader source: Energy.gov [DOE]

    In 2015 Oklahoma amended the Oklahoma Wind Energy Development Act. The amendments added new financial security requirements, setback requirements, and notification requirements for wind energy...

  1. New Commercial Program Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    New Commercial Program Development Commercial Current Promotions Industrial Federal Agriculture Beginning in spring of 2015, the BPA Commercial Team will be working with utilities...

  2. SRNL LDRD - Developed Technologies

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Developed Technologies Porous Wall Hollow Glass Microspheres Porous Wall Hollow Glass Microspheres Tiny Glass Spheres for Energy Storage, Medical Applications and Other Uses...

  3. Sustainable Development Conference

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    award at Sustainable Development Conference October 22, 2015 LANL Researchers Yongchao Yang, Alessandro Cattaneo and David Mascareas of the National Security Education...

  4. UNIRIB: Equipment Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    intensities. Development of new beams is also needed to support experiments with proton-rich isotopes that are relevant to radiochemical detectors for stewardship science....

  5. Child Development Centers

    Broader source: Energy.gov [DOE]

    Headquarters operates National Association for the Education of Young Children (NAEYC) accredited child development centers at its Forrestal and Germantown facilities. Each center provides day care...

  6. Technical Assistance to Developers

    SciTech Connect (OSTI)

    Rockward, Tommy; Borup, Rodney L.; Garzon, Fernando H.; Mukundan, Rangachary; Spernjak, Dusan

    2012-07-17

    This task supports the allowance of technical assistance to fuel-cell component and system developers as directed by the DOE. This task includes testing of novel materials and participation in the further development and validation of single cell test protocols. This task also covers technical assistance to DOE Working Groups, the U.S. Council for Automotive Research (USCAR) and the USCAR/DOE Driving Research and Innovation for Vehicle efficiency and Energy sustainability (U.S. Drive) Fuel Cell Technology Team. Assistance includes technical validation of new fuel cell materials and methods, single cell fuel cell testing to support the development of targets and test protocols, and regular advisory participation in other working groups and reviews. This assistance is made available to PEM fuel cell developers by request and DOE Approval. The objectives are to: (1) Support technically, as directed by DOE, fuel cell component and system developers; (2) Assess fuel cell materials and components and give feedback to developers; (3) Assist the DOE Durability Working Group with the development of various new material durability Testing protocols; and (4) Provide support to the U.S. Council for Automotive Research (USCAR) and the USCAR/DOE Fuel Cell Technology Team. FY2012 specific technical objectives are: (1) Evaluate novel MPL materials; (2) Develop of startup/ shutdown protocol; (3) Test the impact of hydrophobic treatment on graphite bi-polar plates; (4) Perform complete diagnostics on metal bi-polar plates for corrosion; and (5) Participate and lead efforts in the DOE Working Groups.

  7. Reference Model Development

    SciTech Connect (OSTI)

    Jepsen, Richard

    2011-11-02

    Presentation from the 2011 Water Peer Review in which principal investigator discusses project progress to develop a representative set of Reference Models (RM) for the MHK industry to develop baseline cost of energy (COE) and evaluate key cost component/system reduction pathways.

  8. Wind Economic Development (Postcard)

    SciTech Connect (OSTI)

    Not Available

    2011-08-01

    The U.S. Department of Energy's Wind Powering America initiative provides information on the economic development benefits of wind energy. This postcard is a marketing piece that stakeholders can provide to interested parties; it will guide them to the economic development benefits section on the Wind Powering America website.

  9. Aggressive development plans

    SciTech Connect (OSTI)

    McCandless, D.H.

    1993-11-01

    Hydropower developments are capital-intensive, are subject to uncertainty in water availability, and have a somewhat higher construction-cost risk than thermal projects. However, a developer who selects an attractive site, arranges a good financial package, and designs and constructs a well-conceived hydropower project can earn an attractive long-term return while providing a dependable, low-cost source of energy to consumers. In the Philippines, many attractive hydropower sites are now available. As demonstrated by the attendance at the US Trade and Development Agency-sponsored Symposium on Power Development and Investment Opportunities in the Philippines, in Washington, D.C., on Sept. 21 and 22, 1993, there is a growing interest in private hydropower. Following its successful record in implementing thermal private power developments, the Philippines now offers many attractive opportunities to exploit its tremendous potential in the hydropower sector.

  10. Liga developer apparatus system

    DOE Patents [OSTI]

    Boehme, Dale R. (Pleasanton, CA); Bankert, Michelle A. (San Francisco, CA); Christenson, Todd R. (Albuquerque, NM)

    2003-01-01

    A system to fabricate precise, high aspect ratio polymeric molds by photolithograpic process is described. The molds for producing micro-scale parts from engineering materials by the LIGA process. The invention is a developer system for developing a PMMA photoresist having exposed patterns comprising features having both very small sizes, and very high aspect ratios. The developer system of the present invention comprises a developer tank, an intermediate rinse tank and a final rinse tank, each tank having a source of high frequency sonic agitation, temperature control, and continuous filtration. It has been found that by moving a patterned wafer, through a specific sequence of developer/rinse solutions, where an intermediate rinse solution completes development of those portions of the exposed resist left undeveloped after the development solution, by agitating the solutions with a source of high frequency sonic vibration, and by adjusting and closely controlling the temperatures and continuously filtering and recirculating these solutions, it is possible to maintain the kinetic dissolution of the exposed PMMA polymer as the rate limiting step.

  11. Jobs and Economic Development Modeling

    Office of Energy Efficiency and Renewable Energy (EERE)

    Project objective: Develop models to estimate jobs and economic impacts from geothermal project development and operation.

  12. Microsystem product development.

    SciTech Connect (OSTI)

    Polosky, Marc A.; Garcia, Ernest J.

    2006-04-01

    Over the last decade the successful design and fabrication of complex MEMS (MicroElectroMechanical Systems), optical circuits and ASICs have been demonstrated. Packaging and integration processes have lagged behind MEMS research but are rapidly maturing. As packaging processes evolve, a new challenge presents itself, microsystem product development. Product development entails the maturation of the design and all the processes needed to successfully produce a product. Elements such as tooling design, fixtures, gages, testers, inspection, work instructions, process planning, etc., are often overlooked as MEMS engineers concentrate on design, fabrication and packaging processes. Thorough, up-front planning of product development efforts is crucial to the success of any project.

  13. Economic Development Office

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Economic Development Office Is your technology business looking for a door to the Laboratory? The Economic Development Office at PNNL is here to help you start, grow, or relocate your business. We help you tap into technology experts, facilities, and other resources available at the Laboratory...some at no cost to you. We've helped more than 400 companies in our region and 100 more nationwide. Our goals: to expand the economy's technology sector and create high-value jobs. Economic Development

  14. SSL TECHNOLOGY DEVELOPMENT WORKSHOP

    Broader source: Energy.gov [DOE]

    Rapid advances in SSL technology make it easy to forget that this technology is still at a relatively early stage of development, and much of its potential remains untapped. The 10th annual DOE SSL...

  15. Acquisition Career Development Program

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2004-04-19

    This Order establishes training and certification requirements and career development programs under the Acquisition Career Development (ACD) Program for DOE and NNSA acquisition workforce. The acquisition workforce includes contracting, purchasing, personal property management, program management, Contracting Officers and Contracting Officer Representatives. The ACD Program implements the Office of Federal Procurement Policy (OFPP) requirements, Federal Acquisition Regulation (FAR) requirements, Federal Acquisition Reform Act (FARA) requirements, and the objectives of Executive Order (E.O.) 129231, Federal Procurement Reform, dated 10-13-1994. This order cancels DOE O 361.1, Acquisition Career Development Program, dated 11-10-99, AND Acquisition Letter 2003-05, Personal Property Management Career Development, Training, and Certification Program, dated 9-10-03. Cancels DOE O 361.1 Chg 2. Canceled by DOE O 361.1B.

  16. Sustainable Development Conference

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    team wins best paper award at Sustainable Development Conference October 22, 2015 LANL Researchers Yongchao Yang, Alessandro Cattaneo and David Mascareñas of the National Security Education Center-Engineering Institute (NSEC-EI) recently received the Best Paper Award at the Third Annual International Conference for Sustainable Development. Their winning paper is "Potential Structural Health Monitoring Tools to Mitigate Corruption in the Construction Industry Associated with Rapid

  17. ORISE: Health Literacy Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Literacy Development While health disparities may be attributed to a number of factors, health literacy development and access to health information can help special populations gain a better understanding of wellness and prevention. The Internet and other means of electronic communication have become popular tools that are allowing people to take control of their health. According to Healthy People 2010, nearly half of American adults (90 million people) are deemed "health

  18. ORISE: Standards development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Standards development For 30 years, health physicists with the Oak Ridge Institute for Science and Education (ORISE) have actively participated in the development of industry standards that provide guidance and support to decontamination and decommissioning projects across the United States. Because of our extensive experience conducting radiological surveys and site characterization, our federal agency customers, such as the U.S. Nuclear Regulatory Commission (NRC) and the U.S. Department of

  19. Acquisition Career Development Program

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2001-12-20

    To set forth requirements and responsibilities for the Department of Energy (DOE) Acquisition Career Development (ACD) Program, which implements Office of Federal Procurement Policy (OFPP) requirements, Federal Acquisition Regulation (FAR) requirements, Federal Acquisition Reform Act (FARA) requirements, and the career development objectives of Executive Order (E.O.) 12931. Change 1 approved 12-20-2001. Cancels DOE O 361.1. Canceled by DOE O 361.1 Chg 2.

  20. Acquisition Career Development Program

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2003-06-13

    To set forth requirements and responsibilities for the Department of Energy (DOE) Acquisition Career Development (ACD) Program, which implements Office of Federal Procurement Policy (OFPP) requirements, Federal Acquisition Regulation (FAR) requirements, Federal Acquisition Reform Act (FARA) requirements, and the career development objectives of Executive Order (E.O.) 12931. Change 1 approved 12-20-2001. Change 2 approved 06-13-03. Cancels DOE O 361.1 Chg 1. Canceled by DOE O 361.1A.

  1. Economic Development - SRSCRO

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Economic Development As the designated Community Reuse Organization (CRO) for the Department of Energy's Savannah River Site, the Savannah River Site Community Reuse Organization (SRSCRO) is charged with the responsibility for developing and implementing a comprehensive plan to diversify the economy of the SRSCRO region. During its 50 year history, the Savannah River Site has supported America's national defense mission, contributing significantly to the successful end of the Cold War at the

  2. ARM - Curriculum Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    TeachersCurriculum Development Outreach Home Room News Publications Traditional Knowledge Kiosks Barrow, Alaska Tropical Western Pacific Site Tours Contacts Students Study Hall About ARM Global Warming FAQ Just for Fun Meet our Friends Cool Sites Teachers Teachers' Toolbox Lesson Plans Curriculum Development Manus Island welcomes ARM Education. Manus Island welcomes ARM Education. The Atmospheric Radiation Measurement (ARM) Education and Outreach Program helped create a climate change curriculum

  3. Transmission Developers Inc.

    Energy Savers [EERE]

    ' % ~ Transmission Developers Inc. July 7, 2011 Mr. Anthony J. Como Director, Permitting and Siting Office ofElectricity Delivery and Energy Reliability (OE-20) U.S. Department of Energy 1000 Independence A venue SW, Room 8G-024 Washington, D.C. 20585 Subject: Champlain Hudson Power Express Project U.S. Department of Energy Presidential Permit Application PP-362 Dear Mr. Como: On January 25, 2010, Transmission Developers, Inc. ("TDI'' or "Applicants") submitted on behalf of

  4. Guidebook on biogas development

    SciTech Connect (OSTI)

    Not Available

    1980-01-01

    This guidebook covers the practical aspects of small-scale biogas development suitable for use in rural areas in developing countries, especially those of the ESCAP region. It is intended that all aspects of biogas are covered so that someone with no knowledge of the subject can, with confidence, design, build, operate and maintain a biogas plant. Information on biogas technology in China is also included. Chapters cover: the biogas process; factors effecting gas-plant design and operation; the classification and design principles of plants; design, size and site selection; the construction of digesters; gas holders and pipes; household gas appliances and their use; starting and operating a biogas digester; servicing and safety; improving gas-plant performance; commercial uses of biogas; the effluent and its uses, biogas-plant development programmes; community plants; and economics. In the annexes, designs for biogas plants of the fixed-dome, bag and floating gas-holder type are presented. 9 references.

  5. Power Systems Development Facility

    SciTech Connect (OSTI)

    Southern Company Services

    2009-01-31

    In support of technology development to utilize coal for efficient, affordable, and environmentally clean power generation, the Power Systems Development Facility (PSDF), located in Wilsonville, Alabama, has routinely demonstrated gasification technologies using various types of coals. The PSDF is an engineering scale demonstration of key features of advanced coal-fired power systems, including a Transport Gasifier, a hot gas particulate control device, advanced syngas cleanup systems, and high-pressure solids handling systems. This final report summarizes the results of the technology development work conducted at the PSDF through January 31, 2009. Twenty-one major gasification test campaigns were completed, for a total of more than 11,000 hours of gasification operation. This operational experience has led to significant advancements in gasification technologies.

  6. Graphite Technology Development Plan

    SciTech Connect (OSTI)

    W. Windes; T. Burchell; M.Carroll

    2010-10-01

    The Next Generation Nuclear Plant (NGNP) will be a helium-cooled High Temperature Gas Reactor (HTGR) with a large graphite core. Graphite physically contains the fuel and comprises the majority of the core volume. Graphite has been used effectively as a structural and moderator material in both research and commercial high-temperature gas-cooled reactors. This development has resulted in graphite being established as a viable structural material for HTGRs. While the general characteristics necessary for producing nuclear grade graphite are understood, historical nuclear grades no longer exist. New grades must be fabricated, characterized, and irradiated to demonstrate that current grades of graphite exhibit acceptable non-irradiated and irradiated properties upon which the thermomechanical design of the structural graphite in NGNP is based. This Technology Development Plan outlines the research and development (R&D) activities and associated rationale necessary to qualify nuclear grade graphite for use within the NGNP reactor.

  7. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer Home > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: clean energy Type Term Title Author Replies Last Post sort icon Blog...

  8. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer Home > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: citation Type Term Title Author Replies Last Post sort icon Blog entry...

  9. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer Home > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: citing Type Term Title Author Replies Last Post sort icon Blog entry...

  10. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer Home > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: Energy Visions Prize Type Term Title Author Replies Last Post sort icon...

  11. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer Home > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: cleanweb Type Term Title Author Replies Last Post sort icon Blog entry...

  12. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer Home > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: Energy data Type Term Title Author Replies Last Post sort icon Blog...

  13. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer Home > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: funding Type Term Title Author Replies Last Post sort icon Blog entry...

  14. Hydropower research and development

    SciTech Connect (OSTI)

    1997-03-01

    This report is a compilation of information on hydropower research and development (R and D) activities of the Federal government and hydropower industry. The report includes descriptions of on-going and planned R and D activities, 1996 funding, and anticipated future funding. Summary information on R and D projects and funding is classified into eight categories: fish passage, behavior, and response; turbine-related; monitoring tool development; hydrology; water quality; dam safety; operations and maintenance; and water resources management. Several issues in hydropower R and D are briefly discussed: duplication; priorities; coordination; technical/peer review; and technology transfer/commercialization. Project information sheets from contributors are included as an appendix.

  15. Exciting new PDSF developments

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Exciting new PDSF developments Exciting new PDSF developments February 25, 2014 I'm pleased to announce that PDSF successfully deployed new login nodes last week. Some of you may already have noticed that you are now landing on nodes named pdsf[6-8] when you ssh to pdsf.nersc.gov. Our new login nodes use the faster Mendel IB network and more modern hardware. We've gone from four nodes to three but, because each node has a higher core count, the processing power is staying the same. The old

  16. JAGUAR developer's manual.

    SciTech Connect (OSTI)

    Chan, Ethan

    2011-06-01

    JAGUAR (JAva GUi for Applied Research) is a Java software tool providing an advanced text editor and graphical user interface (GUI) to manipulate DAKOTA (Design Analysis Kit for Optimization and Terascale Applications) input specifications. This document focuses on the technical background necessary for a developer to understand JAGUAR.

  17. ECH Technology Development

    SciTech Connect (OSTI)

    Temkin, Richard

    2014-12-24

    Electron Cyclotron Heating (ECH) is needed for plasma heating, current drive, plasma stability control, and other applications in fusion energy sciences research. The program of fusion energy sciences supported by U. S. DOE, Office of Science, Fusion Energy Sciences relies on the development of ECH technology to meet the needs of several plasma devices working at the frontier of fusion energy sciences research. The largest operating ECH system in the world is at DIII-D, consisting of six 1 MW, 110 GHz gyrotrons capable of ten second pulsed operation, plus two newer gyrotrons. The ECH Technology Development research program investigated the options for upgrading the DIII-D 110 GHz ECH system. Options included extending present-day 1 MW technology to 1.3 1.5 MW power levels or developing an entirely new approach to achieve up to 2 MW of power per gyrotron. The research consisted of theoretical research and designs conducted by Communication and Power Industries of Palo Alto, CA working with MIT. Results of the study would be validated in a later phase by research on short pulse length gyrotrons at MIT and long pulse / cw gyrotrons in industry. This research follows a highly successful program of development that has led to the highly reliable, six megawatt ECH system at the DIII-D tokamak. Eventually, gyrotrons at the 1.5 megawatt to multi-megawatt power level will be needed for heating and current drive in large scale plasmas including ITER and DEMO.

  18. About Research & Development

    Office of Energy Efficiency and Renewable Energy (EERE)

    Next-generation manufacturing technologies will transform industry and open new markets in the United States and around the world. The Advanced Manufacturing Office (AMO) supports Research and Development on technology projects that will help manufacturers become more robust, adaptable, profitable, and globally competitive.

  19. Economic Development Office

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Contacts Gary Spanner PNNL Manager, Economic Development 509/372-4296 ROB/1210 Robin Conger Program Manager 509/372-4328 ROB/1216 Bernard Hansen Entrepreneurial Programs Manager 206/842-9485 HOME003/ Pam Dawson Specialist 509/375-2075 ROB/1230

  20. New Program Development & Launch

    U.S. Energy Information Administration (EIA) Indexed Site

    Development & Launch visit: on.sce.comideas Making Energy Simple Again 10 Lessons L earned a nd K ey T ake Aways * Security a nd p rivacy s hould a lways b e a t t he t op o f m ...

  1. SES CANDIDATE DEVELOPMENT PROGRAM

    Energy Savers [EERE]

    4 (11-03) SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) Supervisor's Evaluation of Candidate's Performance During Developmental Assignment DATE:________________ NAME OF SES CANDIDATE: TITLE OF POSITION: LOCATION OF ASSIGNMENT: ASSIGNMENT DURATION: PART I: EVALUATION OF ASSIGNMENT OBJECTIVES Please evaluate the candidate's level of performance in meeting the objectives of the assignment as Successful or Unacceptable. Objectives Standards Performance Evaluation PLEASE RATE YOUR

  2. Marine & hydrokinetic technology development.

    SciTech Connect (OSTI)

    LiVecchi, Al; Jepsen, Richard Alan

    2010-06-01

    The Wind and Water Power Program supports the development of marine and hydrokinetic devices, which capture energy from waves, tides, ocean currents, the natural flow of water in rivers, and marine thermal gradients, without building new dams or diversions. The program works closely with industry and the Department of Energy's national laboratories to advance the development and testing of marine and hydrokinetic devices. In 2008, the program funded projects to develop and test point absorber, oscillating wave column, and tidal turbine technologies. The program also funds component design, such as techniques for manufacturing and installing coldwater pipes critical for ocean thermal energy conversion (OTEC) systems. Rigorous device testing is necessary to validate and optimize prototypes before beginning full-scale demonstration and deployment. The program supports device testing by providing technology developers with information on testing facilities. Technology developers require access to facilities capable of simulating open-water conditions in order to refine and validate device operability. The program has identified more than 20 tank testing operators in the United States with capabilities suited to the marine and hydrokinetic technology industry. This information is available to the public in the program's Hydrodynamic Testing Facilities Database. The program also supports the development of open-water, grid-connected testing facilities, as well as resource assessments that will improve simulations done in dry-dock and closed-water testing facilities. The program has established two university-led National Marine Renewable Energy Centers to be used for device testing. These centers are located on coasts and will have open-water testing berths, allowing researchers to investigate marine and estuary conditions. Optimal array design, development, modeling and testing are needed to maximize efficiency and electricity generation at marine and hydrokinetic power plants while mitigating nearby and distant impacts. Activities may include laboratory and computational modeling of mooring design or research on device spacing. The geographies, resources, technologies, and even nomenclature of the U.S. marine and hydrokinetic technology industry have yet to be fully understood or defined. The program characterizes and assesses marine and hydrokinetic devices, and then organizes the collected information into a comprehensive and searchable Web-based database, the Marine and Hydrokinetic Technology Database. The database, which reflects intergovernmental and international collaboration, provides industry with one of the most comprehensive and up-to-date public resources on marine and hydrokinetic devices.

  3. Introduction of mercury resistant bacterial strains to Hg(II) amended soil microcosms increases the resilience of the natural microbial community to mercury stress

    SciTech Connect (OSTI)

    de Lipthay, Julia R.; Rasmussen, Lasse D.; Serensen, Soren J.

    2004-03-17

    Heavy metals are among the most important groups of pollutant compounds, and they are highly persistent in the soil environment. Techniques that can be used for the remediation of heavy metal contaminated environments thus need to be evolved. In the present study we evaluated the effect of introducing a Hg resistance plasmid in subsurface soil communities. This was done in microcosms with DOE subsurface soils amended with 5-10 ppm of HgCl2. Two microcosms were set up. In microcosm A we studied the effect of adding strain S03539 containing either the Hg resistance conjugative plasmid, pJORD 70, or the Hg resistance mobilizable plasmid, pPB117. In microcosm B we studied the effect of adding strain KT2442 with and without pJORD70. For both microcosms, the effect on the resilience of the indigenous bacterial community as well as the effect on the soil concentration of Hg was evaluated.

  4. Energy Efficiency Project Development

    SciTech Connect (OSTI)

    IUEP

    2004-03-01

    The International Utility Efficiency Partnerships, Inc. (IUEP) has been a leader among the industry groups that have supported voluntary initiatives to promote international energy efficiency projects and address global climate change. The IUEP maintains its leadership by both supporting international greenhouse gas (GHG) reduction projects under the auspices of the U.S. Department of Energy (DOE) and by partnering with U.S. and international organizations to develop and implement strategies and specific energy efficiency projects. The goals of the IUEP program are to (1) provide a way for U.S. industry to maintain a leadership role in international energy efficiency infrastructure projects; (2) identify international energy project development opportunities to continue its leadership in supporting voluntary market-based mechanisms to reduce GHG emissions; and (3) demonstrate private sector commitment to voluntary approaches to global climate issues. The IUEP is dedicated to identifying, promoting, managing, and assisting in the registration of international energy efficiency projects that result in demonstrated voluntary reductions of GHG emissions. This Final Technical Report summarizes the IUEP's work in identifying, promoting, managing, and assisting in development of these projects and IUEP's effort in creating international cooperative partnerships to support project development activities that develop and deploy technologies that (1) increase efficiency in the production, delivery and use of energy; (2) increase the use of cleaner, low-carbon fuels in processing products; and (3) capture/sequester carbon gases from energy systems. Through international cooperative efforts, the IUEP intends to strengthen partnerships for energy technology innovation and demonstration projects capable of providing cleaner energy in a cost-effective manner. As detailed in this report, the IUEP met program objectives and goals during the reporting period January 1, 2001 through December 31, 2002. At the request of the DOE, we have also included in this report additional activities during the reporting period January, 1999 through January, 2001. This additional information had been reported earlier in the Final Technical Reports that summarized activities undertaken in those earlier periods.

  5. e+ e- Factory Developments

    SciTech Connect (OSTI)

    Sullivan, Michael; /SLAC

    2010-08-26

    The impressive performance of current (KEKB) and recent (PEP-II) B-Factory colliders has increased interest in developing even higher luminosity B-factories. Two new designs are being developed (SuperKEKB and SuperB). Both designs plan to deliver a luminosity in the range of 1 x 10{sup 36} cm{sup -2}s{sup -1}, nearly 100 times the present B-factory level. Achieving this high luminosity requires high-current beams and short bunch lengths and/or a new way of colliding the beams. The SuperB design employs a crabbed magnetic waist with a large crossing angle and the SuperKEKB design is looking at crab cavities with high-current beams and/or a travelling focus. I describe the designs being studied to achieve the high luminosity needed for the next generation of B-Factories.

  6. Accelerating Advanced Material Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Materials Research in the Information Age Accelerating Advanced Material Development NERSC Science Gateway a 'Google of Material Properties' October 31, 2011 Linda Vu, lvu@lbl.gov, +1 510 495 2402 Kristin Persson is one of the founding scientists behind the Materials Project, a computational tool aimed at taking the guesswork out of new materials discoveries, especially those aimed at energy applications like batteries. (Roy Kaltschmidt, LBNL) New materials are crucial to building a clean energy

  7. Issue Development sheet Example

    Broader source: Energy.gov [DOE]

    ISSUE DEVELOPMENT SHEET INFORMATION ONLY The information provided below indicates that a potential concern for finding has been identified. Please provide any objective evidence you may have that could either alleviate the concern or eliminate the finding. If no objective evidence is available/can be provided by the end of this audit (at the scheduled end of field work), this information will be included in the audit report and reported as a concern or an audit finding as appropriate.

  8. HTL Model Development

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    1.3.4.100 HTL Model Development MARCH 24, 2015 ALGAE Sue Jones Yunhua Zhu, Lesley Snowden-Swan, Dan Anderson, Rich Hallen, Karl Albrecht, Doug Elliott, Andy Schmidt Pacific Northwest National Laboratory This presentation does not contain any proprietary, confidential, or otherwise restricted information Goal Statement for HTL Model 2 GOAL: Enable R&D to produce sustainable, economic liquid fuels through targeted research coupled with techno-economic analysis (TEA) leading to optimized algal

  9. Update on INSIGHTS Development

    SciTech Connect (OSTI)

    Not Listed; Eric Burgett

    2011-09-01

    INSIGHTS is a transformational separate effects testing capability to perform in situ irradiation studies and characterization of the microscale behavior of nuclear fuel materials under a wide variety of in-pile conditions. Separate effects testing including growth, irradiation, and monitoring of these materials, and encompasses the full science based approach for fuels development from the nanoscale to the mesoscale behavior of the sample material and other defects driven by the modeling and simulation efforts of INL.

  10. Acquisition Career Development Program

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    1999-11-10

    The Order implements the Department's Acquisition Career Development program, mandatory for professionals in the GS-1102 and 1105 occupational procurement series, as well as others with significant procurement responsibilities. The Order also ensures that members of the acquisition workforce are aware of and adhere to the mandatory training and certification requirements. Cancels Acquisition Letter 98-06. Canceled by DOE O 361.1 Chg 1.

  11. Heat-Exchanger Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Heat-Exchanger Development - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Fuel Cycle Defense Waste Management Programs

  12. ARM Raman Lidar Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Development - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Fuel Cycle Defense Waste Management Programs Advanced Nuclear

  13. Advanced Bit Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Bit Development - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Fuel Cycle Defense Waste Management Programs Advanced Nuclear

  14. WINDExchange: Workforce Development

    Wind Powering America (EERE)

    Workforce Development A large white cylinder, a portion of a turbine tower, lays horizontally on the ground with three men in safety vests and hard hats standing on the right side and a blue crane on the left side. Several technicians prepare to erect a part of the Gamesa tower at the National Wind Technology Center. Photo by Dennis Schroeder, NREL 20853 The United States needs a skilled and qualified wind energy workforce to produce domestic clean power. Vital industry positions include

  15. Lighting Developments to 2030

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Lighting Developments to 2030 - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Fuel Cycle Defense Waste Management Programs

  16. New Science Developments | JCESR

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    New Science Developments Lawrence Berkeley National Laboratory's scientist Anna Javier prepares a sample for transmission electron microscopy imaging using a microtome in a battery lab at Berkeley Lab's Environmental Energy Technologies Division. Berkeley Lab is one of several major U.S. research institutions and industrial firms that form the Joint Center for Energy Storage Research, a public-private partnership that aims to overcome critical scientific and technical barriers and create new

  17. Sustainable Subsurface Energy Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Sustainable Subsurface Energy Development - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Fuel Cycle Defense Waste Management

  18. XOP: Recent Developments

    Office of Scientific and Technical Information (OSTI)

    XOP: Recent Developments Manuel SBnchez del Woa and Roger 3. Dejus' "European Synchrotron Radiation Facility BP 220, 38043 Grenoble-Cedex, France 'Advanced Photon Source Argonne National Laboratory, Argonne, IL 60439, USA ABSTRACT XOP (X-ray Optics utilities) is a graphical user interface (GUI) to run computer programs which calculate basic information needed by synchrotron radiation beamline scientists and engineers. It can also be used as a front-end for specific codes or packages for

  19. SES CANDIDATE DEVELOPMENT PROGRAM

    Energy Savers [EERE]

    3 (11-03) SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) Developmental Assignment Opportunity DATE: NAME OF SES CANDIDATE: TITLE: ASSIGNMENT NUMBER: ASSIGNMENT BEGINS: ENDS: TELEPHONE NUMBER: FAX NUMBER: EMAIL ADDRESS: ASSIGNMENT LOCATION HOST ORGANIZATION: PURPOSE OF ASSIGNMENT: ASSIGNMENT POSITION: ASSIGNMENT DUTIES: EXECUTIVE COR QUALIFICATIONS TO BE ADDRESSED: OFFICE ADDRESS: TELEPHONE NUMBER: FAX NUMBER: E-MAIL ADDRESS: 1 U.S. DEPARTMENT OF ENERGY SENIOR EXECUTIVE SERVICE

  20. SES CANDIDATE DEVELOPMENT PROGRAM

    Energy Savers [EERE]

    5 (11-03) SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) Candidate Developmental Assignment Evaluation DATE:_______________ NAME OF SES CANDIDATE TITLE OF POSITION LOCATION ASSIGNMENT DURATION: Which Executive Core Qualification(s) was this assignment intended to meet? Leading Change Leading People Results Driven Business Acumen Building Coalitions/Communication Please provide a brief description of your assignment. Did the experience meet your expectation? Was this a good

  1. SES CANDIDATE DEVELOPMENT PROGRAM

    Energy Savers [EERE]

    6 (11-03) SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) Evaluation of Formal Training DATE:_______________ CANDIDATE NAME: TITLE OF TRAINING PROGRAM: VENDOR/LOCATION: TRAINING DATES: Which Executive Core Qualification(s) was this assignment intended to meet? Leading Change Leading People Results Driven Business Acumen Building Coalitions/Communication Please check one for each of the following: Level of difficulty: Too Advanced ___ Appropriate ___ Too Elementary ___ Length of

  2. Issue Development sheet Blank

    Broader source: Energy.gov [DOE]

    ISSUE DEVELOPMENT SHEET INFORMATION ONLY The information provided below indicates that a potential concern for finding has been identified. Please provide any objective evidence you may have that could either alleviate the concern or eliminate the finding. If no objective evidence is available/can be provided by the end of this audit (at the scheduled end of field work), this information will be included in the audit report and reported as a concern or an audit finding as appropriate.

  3. National Fertilizer Development Center

    Office of Legacy Management (LM)

    h-L National Fertilizer Development Center May 15, 1980 nww Hr. William Et Mott, Director Environmental Control Technology Division Office of Environment Dcpartiaent of Energy Washington, DC 20545 Dear Mr. Mott: This is in response to your letter of May 5 requesting ccmments on a report dated Xarct; 1930 which summarizes a preliminary radiological survey of facilities used in the early 1950's for studies of recovery of uranium from leached zone ore. I have made a few suggested changes to the

  4. Stirling technology development status

    SciTech Connect (OSTI)

    Dochat, G.R. ); Dudenhoefer, J.E. )

    1993-01-15

    Free-piston Stirling power converters have the potential to meet the many future space power requirements for a wide variety of applications with less mass, better efficiency, and less total area (collector and radiator) than other power converter options. These benefits result in significant dollar savings over the projected mission lifetime. The National Aeronautics and Space Administration (NASA)---Lewis Research Center (LeRC), which has the responsibility to evaluate and develop power technologies that can satisfy anticipated future space mission power requirements, has been developing free-piston Stirling power converters and is bringing the Stirling technology to readiness. As the principal contractor to NASA-LeRC, Mechanical Technology Incorporated (MTI) is under contract to develop the necessary space Stirling technology but also demonstrate the readiness of the technology in two generations of full-scale power converters. The first generation Stirling power converter, the component test power converter (CTPC), initiated cold end testing at the end of 1991, with hot testing scheduled during 1992. This paper reviews test progress of the CTPC including the initial hot engine test results. Modifications incorporated into the CTPC from the earlier space power demonstrator engine are reviewed as well.

  5. NOx Sensor Development

    SciTech Connect (OSTI)

    Woo, L Y; Glass, R S

    2010-11-01

    NO{sub x} compounds, specifically NO and NO{sub 2}, are pollutants and potent greenhouse gases. Compact and inexpensive NO{sub x} sensors are necessary in the next generation of diesel (CIDI) automobiles to meet government emission requirements and enable the more rapid introduction of more efficient, higher fuel economy CIDI vehicles. Because the need for a NO{sub x} sensor is recent and the performance requirements are extremely challenging, most are still in the development phase. Currently, there is only one type of NO{sub x} sensor that is sold commercially, and it seems unlikely to meet more stringent future emission requirements. Automotive exhaust sensor development has focused on solid-state electrochemical technology, which has proven to be robust for in-situ operation in harsh, high-temperature environments (e.g., the oxygen stoichiometric sensor). Solid-state sensors typically rely on yttria-stabilized zirconia (YSZ) as the oxygen-ion conducting electrolyte and then target different types of metal or metal-oxide electrodes to optimize the response. Electrochemical sensors can be operated in different modes, including amperometric (a current is measured) and potentiometric (a voltage is measured), both of which employ direct current (dc) measurements. Amperometric operation is costly due to the electronics necessary to measure the small sensor signal (nanoampere current at ppm NO{sub x} levels), and cannot be easily improved to meet the future technical performance requirements. Potentiometric operation has not demonstrated enough promise in meeting long-term stability requirements, where the voltage signal drift is thought to be due to aging effects associated with electrically driven changes, both morphological and compositional, in the sensor. Our approach involves impedancemetric operation, which uses alternating current (ac) measurements at a specified frequency. The approach is described in detail in previous reports and several publications. Briefly, impedancemetric operation has shown the potential to overcome the drawbacks of other approaches, including higher sensitivity towards NO{sub x}, better long-term stability, potential for subtracting out background interferences, total NO{sub x} measurement, and lower cost materials and operation. Past LLNL research and development efforts have focused on characterizing different sensor materials and understanding complex sensing mechanisms. Continued effort has led to improved prototypes with better performance, including increased sensitivity (to less than 5 ppm) and long-term stability, with more appropriate designs for mass fabrication, including incorporation of an alumina substrate with an imbedded heater. Efforts in the last year to further improve sensor robustness have led to successful engine dynamometer testing with prototypes mounted directly in the engine manifold. Previous attempts had required exhaust gases to be routed into a separate furnace for testing due to mechanical failure of the sensor from engine vibrations. A more extensive cross-sensitivity study was also undertaken this last year to examine major noise factors including fluctuations in water, oxygen, and temperature. The quantitative data were then used to develop a strategy using numerical algorithms to improve sensor accuracy. The ultimate goal is the transfer of this technology to a supplier for commercialization. Due to the recent economic downturn, suppliers are demanding more comprehensive data and increased performance analysis before committing their resources to take the technology to market. Therefore, our NO{sub x} sensor work requires a level of technology development more thorough and extensive than ever before. The objectives are: (1) Develop an inexpensive, rapid-response, high-sensitivity and selective electrochemical sensor for oxides of nitrogen (NO{sub x}) for compression-ignition, direct-injection (CIDI) exhaust gas monitoring; (2) Explore and characterize novel, effective sensing methodologies based on impedance measurements and designs and manufacturing metho

  6. developing-compute-efficient

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Developing Compute-efficient, Quality Models with LS-PrePost® 3 on the TRACC Cluster Oct. 21-22, 2010 Argonne TRACC Dr. Cezary Bojanowski Dr. Ronald F. Kulak This email address is being protected from spambots. You need JavaScript enabled to view it. Announcement pdficon small The LS-PrePost Introductory Course was held October 21-22, 2010 at TRACC in West Chicago with interactive participation on-site as well as remotely via the Internet. Intended primarily for finite element analysts with

  7. Photonics Research and Development

    SciTech Connect (OSTI)

    Pookpanratana, Sujitra; Shlayan, Neveen; Venkat, Rama; Das, Bisjwajit; Boehm, Bob; Heske, Clemens; Fraser, Donald; Moustakas, Theodore

    2010-01-15

    During the period August 2005 through October 2009, the UNLV Research Foundation (UNLVRF), a non-profit affiliate of the University of Nevada, Las Vegas (UNLV), in collaboration with UNLV??s Colleges of Science and Engineering; Boston University (BU); Oak Ridge National Laboratory (ORNL); and Sunlight Direct, LLC, has managed and conducted a diverse and comprehensive research and development program focused on light-emitting diode (LED) technologies that provide significantly improved characteristics for lighting and display applications. This final technical report provides detailed information on the nature of the tasks, the results of the research, and the deliverables. It is estimated that about five percent of the energy used in the nation is for lighting homes, buildings and streets, accounting for some 25 percent of the average home??s electric bill. However, the figure is significantly higher for the commercial sector. About 60 percent of the electricity for businesses is for lighting. Thus replacement of current lighting with solid-state lighting technology has the potential to significantly reduce this nation??s energy consumption ?? by some estimates, possibly as high as 20%. The primary objective of this multi-year R&D project has been to develop and advance lighting technologies to improve national energy conversion efficiencies; reduce heat load; and significantly lower the cost of conventional lighting technologies. The UNLVRF and its partners have specifically focused these talents on (1) improving LED technologies; (2) optimizing hybrid solar lighting, a technology which potentially offers the benefits of blending natural with artificial lighting systems, thus improving energy efficiency; and (3) building a comprehensive academic infrastructure within UNLV which concentrates on photonics R&D. Task researchers have reported impressive progress in (1) the development of quantum dot laser emitting diodes (QDLEDs) which will ultimately improve energy efficiency and lower costs for display and lighting applications (UNLV College of Engineering); (2) advancing green LED technology based on the Indium-Gallium-Nitride system (BU), thus improving conversion efficiencies; (3) employing unique state-of-the-art X-ray, electron and optical spectroscopies with microscopic techniques to learn more about the electronic structure of materials and contacts in LED devices (UNLV College of Science); (4) establishing a UNLV Display Lighting Laboratory staffed with a specialized team of academic researchers, students and industrial partners focused on identifying and implementing engineering solutions for lighting display-related problems; and (5) conducting research, development and demonstration for HSL essential to the resolution of technological barriers to commercialization.

  8. Workforce Development | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Learning and Workforce Development » Workforce Development Workforce Development Assessment and Evaluation A structured Training Program Evaluation process has been developed by the Office of Learning and Workforce Development to evaluate the effectiveness and efficiency of DOE training courses and programs, while also ensuring public accountability and compliance with regulatory requirements. Training Evaluation involves the assessment of the effectiveness of training courses and programs.

  9. Eltron Research & Development

    SciTech Connect (OSTI)

    Evenson, Carl; Mackay, Richard; Faull, John

    2014-03-01

    This topical report covers technical work conducted under contract DE-FC26-05NT42469 between FY06 Q1 through FY14 Q2. The project evolved through several budget periods, budget revisions and continuation applications. This report covers work performed under the “base” program. In 2010 ARRA funding was added to the project. A separate report covering the ARRA portion of the project was submitted to DOE. The original project was focused on research and development for scale-up of hydrogen separation membrane for a FutureGen type power plant. The work included membrane testing and evaluation of metal alloy flat plates vs. tubes and metal membranes vs. cermet membranes. In addition, economic analysis and process modeling was performed. The original project team included CoorsTek, NORAM, and Praxair. In FY10Q2 a continuation application was filed for conducting a scale-up test at Eastman Chemical. In this part of the project a Subscale Engineering Prototype (SEP) membrane skid was designed, fabricated, and operated on a gasified coal slip-stream on Eastman’s site in Kingsport, TN. Following operation, the project was reorganized and a second continuation application with a new statement of work was initiated in FY12Q1. Finally, based on DOE’s decision not to proceed with a Process Development Unit (PDU) field test, a third continuation application and statement of work was initiated in FY13Q1 to close out the project.

  10. Advanced Hydrogen Turbine Development

    SciTech Connect (OSTI)

    Joesph Fadok

    2008-01-01

    Siemens has developed a roadmap to achieve the DOE goals for efficiency, cost reduction, and emissions through innovative approaches and novel technologies which build upon worldwide IGCC operational experience, platform technology, and extensive experience in G-class operating conditions. In Phase 1, the technologies and concepts necessary to achieve the program goals were identified for the gas turbine components and supporting technology areas and testing plans were developed to mitigate identified risks. Multiple studies were conducted to evaluate the impact in plant performance of different gas turbine and plant technologies. 2015 gas turbine technologies showed a significant improvement in IGCC plant efficiency, however, a severe performance penalty was calculated for high carbon capture cases. Thermodynamic calculations showed that the DOE 2010 and 2015 efficiency targets can be met with a two step approach. A risk management process was instituted in Phase 1 to identify risk and develop mitigation plans. For the risks identified, testing and development programs are in place and the risks will be revisited periodically to determine if changes to the plan are necessary. A compressor performance prediction has shown that the design of the compressor for the engine can be achieved with additional stages added to the rear of the compressor. Tip clearance effects were studied as well as a range of flow and pressure ratios to evaluate the impacts to both performance and stability. Considerable data was obtained on the four candidate combustion systems: diffusion, catalytic, premix, and distributed combustion. Based on the results of Phase 1, the premixed combustion system and the distributed combustion system were chosen as having the most potential and will be the focus of Phase 2 of the program. Significant progress was also made in obtaining combustion kinetics data for high hydrogen fuels. The Phase 1 turbine studies indicate initial feasibility of the advanced hydrogen turbine that meets the aggressive targets set forth for the advanced hydrogen turbine, including increased rotor inlet temperature (RIT), lower total cooling and leakage air (TCLA) flow, higher pressure ratio, and higher mass flow through the turbine compared to the baseline. Maintaining efficiency with high mass flow Syngas combustion is achieved using a large high AN2 blade 4, which has been identified as a significant advancement beyond the current state-of-the-art. Preliminary results showed feasibility of a rotor system capable of increased power output and operating conditions above the baseline. In addition, several concepts were developed for casing components to address higher operating conditions. Rare earth modified bond coat for the purpose of reducing oxidation and TBC spallation demonstrated an increase in TBC spallation life of almost 40%. The results from Phase 1 identified two TBC compositions which satisfy the thermal conductivity requirements and have demonstrated phase stability up to temperatures of 1850 C. The potential to join alloys using a bonding process has been demonstrated and initial HVOF spray deposition trials were promising. The qualitative ranking of alloys and coatings in environmental conditions was also performed using isothermal tests where significant variations in alloy degradation were observed as a function of gas composition. Initial basic system configuration schematics and working system descriptions have been produced to define key boundary data and support estimation of costs. Review of existing materials in use for hydrogen transportation show benefits or tradeoffs for materials that could be used in this type of applications. Hydrogen safety will become a larger risk than when using natural gas fuel as the work done to date in other areas has shown direct implications for this type of use. Studies were conducted which showed reduced CO{sub 2} and NOx emissions with increased plant efficiency. An approach to maximize plant output is needed in order to address the DOE turbine goal for 20-30% reduction o

  11. Ripeness sensor development

    SciTech Connect (OSTI)

    Not Available

    1992-11-01

    About 20--25% of the total production of fruits and vegetables in the USA must be discarded after harvest About 25--30% of this loss is the result of over-ripening and this loss represents about 8.39 [times] 10[sup 12] BTU of invested energy every year. This invested energy could be saved by non-destructive ripeness sensing. Sweetness is an important indicator of fruit quality and highly correlated with ripeness in most fruits. Research to develop a non-destructive fruit ripeness sensor has been conducted in the Agricultural Engineering Department at Purdue University. It is based on [sup 1]H-MR (proton Magnetic Resonance). A first generation prototype of the ripeness sensor based on [sup 1]H-MR was built and tested with. Results show that the sensor can discriminate small fruit (0.75 in diameter or smaller) differing in sugar content by 6%. This prototype can separate the fruit into at least two groups: one ripe and the other not ripe. The estimated cost for such a ripeness sensor is around $4,000. The signal sensitivity of the prototype can be improved to enable it to differentiate between fruits varying in sugar content by only 1 or 2% by using water peak suppression techniques to recover relatively weak sugar resonance signals in intact fruits, modifying circuits to eliminate noise, leakage and distortion of input/output signals, improving the magnetic console to get a higher magnetic field and better homogeneity, and designing a probe to achieve a higher signal-to-noise (S/N) ratio. As research continues a second generation ripeness sensor will be developed which will incorporate many of the improvements and which will be suitable for commercial use. Additional research will allow application of the technique to a wider range of fruit sizes (from blueberries to watermelons). This report describes estimated energy savings, feasibility studies, development of the initial prototype, and preliminary evaluation of the first generation prototype.

  12. NOxsensor development | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    NOxsensor development NOxsensor development PDF icon pm005_woo_2010_o.pdf More Documents & Publications Electrochemical NOx Sensors for Monitoring Diesel Emissions Electrochemical NOxSensor for Monitoring Diesel Emissions NOx Sensor Development

  13. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer Home > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: FOA Type Term Title Author Replies Last Post sort icon Blog entry FOA...

  14. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer Home > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: EIA Type Term Title Author Replies Last Post sort icon Blog entry EIA...

  15. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer Home > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: API Type Term Title Author Replies Last Post sort icon Blog entry API...

  16. Alloys in energy development

    SciTech Connect (OSTI)

    Frost, B.R.T.

    1984-02-01

    The development of new and advanced energy systems often requires the tailoring of new alloys or alloy combinations to meet the novel and often stringent requirements of those systems. Longer life at higher temperatures and stresses in aggressive environments is the most common goal. Alloy theory helps in achieving this goal by suggesting uses of multiphase systems and intermediate phases, where solid solutions were traditionally used. However, the use of materials under non-equilibrium conditions is now quite common - as with rapidly solidified metals - and the application of alloy theory must be modified accordingly. Under certain conditions, as in a reactor core, the rate of approach to equilibrium will be modified; sometimes a quasi-equilibrium is established. Thus an alloy may exhibit enhanced general diffusion at the same time as precipitate particles are being dispersed and solute atoms are being carried to vacancy sinks. We are approaching an understanding of these processes and can begin to model these complex systems.

  17. Advanced servomanipulator development

    SciTech Connect (OSTI)

    Kuban, D.P.

    1985-01-01

    The Advanced Servomanipulator (ASM) System consists of three major components: the ASM slave, the dual arm master controller (DAMC) or master, and the control system. The ASM is remotely maintainable force-reflecting servomanipulator developed at the Oak Ridge National Laboratory (ORNL) as part of the Consolidated Fuel Reprocessing Program. This new manipulator addresses requirements of advanced nuclear fuel reprocessing with emphasis on force reflection, remote maintainability, reliability, radiation tolerance, and corrosion resistance. The advanced servomanipulator is uniquely subdivided into remotely replaceable modules which will permit in situ manipulator repair by spare module replacement. Manipulator modularization and increased reliability are accomplished through a force transmission system that uses gears and torque tubes. Digital control algorithms and mechanical precision are used to offset the increased backlash, friction, and inertia resulting from the gear drives. This results in the first remotely maintainable force-reflecting servomanipulator in the world.

  18. Developer | OpenEI Community

    Open Energy Info (EERE)

    Developer header Developer Home > Groups Content Group Activity By term Q & A Feeds Share your own status updates, and follow the updates & activities of others by creating your...

  19. Nawitas Development | Open Energy Information

    Open Energy Info (EERE)

    Development Jump to: navigation, search Name: Nawitas Development Place: Bratislava, Slovakia Zip: 831 06 Sector: Wind energy Product: Slovak based company active in wind energy...

  20. Power Systems Development Facility

    SciTech Connect (OSTI)

    None

    2003-07-01

    This report discusses Test Campaign TC12 of the Kellogg Brown & Root, Inc. (KBR) Transport Gasifier train with a Siemens Westinghouse Power Corporation (SW) particle filter system at the Power Systems Development Facility (PSDF) located in Wilsonville, Alabama. The Transport Gasifier is an advanced circulating fluidized-bed reactor designed to operate as either a combustor or a gasifier using a particulate control device (PCD). While operating as a gasifier, either air or oxygen can be used as the oxidant. Test run TC12 began on May 16, 2003, with the startup of the main air compressor and the lighting of the gasifier start-up burner. The Transport Gasifier operated until May 24, 2003, when a scheduled outage occurred to allow maintenance crews to install the fuel cell test unit and modify the gas clean-up system. On June 18, 2003, the test run resumed when operations relit the start-up burner, and testing continued until the scheduled end of the run on July 14, 2003. TC12 had a total of 733 hours using Powder River Basin (PRB) subbituminous coal. Over the course of the entire test run, gasifier temperatures varied between 1,675 and 1,850 F at pressures from 130 to 210 psig.

  1. Process Development for Nanostructured Photovoltaics

    SciTech Connect (OSTI)

    2011-05-31

    Fact sheet describing low-cost nanofabrication method to develop nanostructured, dye-sensitized solar cells

  2. Breakthrough Vehicle Development - Fuel Cells

    Fuel Cell Technologies Publication and Product Library (EERE)

    Document describing research and development program for fuel cell power systems for transportation applications.

  3. 1998 wire development workshop proceedings

    SciTech Connect (OSTI)

    1998-04-01

    This report consists of vugraphs of the presentations at the conference. The conference was divided into the following sessions: (1) First Generation Wire Development: Status and Issues; (2) First Generation Wire in Pre-Commercial Prototypes; (3) Second Generation Wire Development: Private Sector Progress and Issues; (4) Second Generation Wire Development: Federal Laboratories; and (5) Fundamental Research Issues for HTS Wire Development.

  4. Development of active porous medium filters based on plasma textiles

    SciTech Connect (OSTI)

    Kuznetsov, Ivan A.; Saveliev, Alexei V.; Rasipuram, Srinivasan; Kuznetsov, Andrey V.; Brown, Alan; Jasper, Warren

    2012-05-15

    Inexpensive, flexible, washable, and durable materials that serve as antimicrobial filters and self-decontaminating fabrics are needed to provide active protection to people in areas regularly exposed to various biohazards, such as hospitals and bio research labs working with pathogens. Airlines and cruise lines need such material to combat the spread of infections. In households these materials can be used in HVAC filters to fight indoor pollution, which is especially dangerous to people suffering from asthma. Efficient filtering materials are also required in areas contaminated by other types of hazardous dust particulates, such as nuclear dust. The primary idea that guided the undertaken study is that a microplasma-generating structure can be embedded in a textile fabric to generate a plasma sheath (''plasma shield'') that kills bacterial agents coming in contact with the fabric. The research resulted in the development of a plasma textile that can be used for producing new types of self-decontaminating garments, fabrics, and filter materials, capable of activating a plasma sheath that would filter, capture, and destroy any bacteriological agent deposited on its surface. This new material relies on the unique antimicrobial and catalytic properties of cold (room temperature) plasma that is benign to people and does not cause thermal damage to many polymer textiles, such as Nomex and polypropylene. The uniqueness of cold plasma as a disinfecting agent lies in the inability of bacteria to develop resistance to plasma exposure, as they can for antibiotics. Plasma textiles could thus be utilized for microbial destruction in active antimicrobial filters (for continuous decontamination and disinfection of large amounts of air) as well as in self-decontaminating surfaces and antibacterial barriers (for example, for creating local antiseptic or sterile environments around wounds and burns).

  5. WEC Model Development at Sandia

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    2C Marine and Hydrokinetic Instrumentation, Measurement & Computer Modeling Workshop - Broomfield, CO July 9 th , 2012 Wave Energy Converter Model Development at Sandia Outline  Overview of SNL's WEC Modeling Activities * Wave Energy Development Roadmap * MHK Reference Models - Diana Bull * WEC Model Tool Development - Kelley Ruehl Reference Models and SNL Array Modeling presented in next session Wave Energy Development Roadmap Overall Goal and Motivation  Goal: Develop a suggested

  6. IEED Tribal Energy Development to Build Tribal Energy Development Capacity

    Broader source: Energy.gov [DOE]

    The Assistant Secretary - Indian Affairs for the U.S. Department of the Interior, through the Office of Indian Energy and Economic Development, is soliciting grant proposals from Indian tribes to build tribal capacity for energy resource development or management under the Department of the Interior's (DOl's) Tribal Energy Development Capacity (TEDC) grant program.

  7. Recent Developments in SHERPA

    SciTech Connect (OSTI)

    Archibald, Jennifer; Gleisberg, Tanju; Hoeche, Stefan; Krauss, Frank; Schonherr, Marek; Schumann, Steffen; Siegert, Frank; Winter, Jan; /Fermilab

    2011-11-15

    Some recent QCD-related developments in the SHERPA event generator are presented. In the past decades, event generators such as PYTHIA [1, 2] and HERWIG [3, 4] have been central for nearly all physics analyses at particle physics experiments at the high-energy frontier. This will also hold true at the LHC, where a large number of interesting signals for new particles or new phenomena (the Higgs boson or any other manifestation of the mechanism behind electro-weak symmetry breaking, supersymmetry, extra dimensions etc.) is hampered by a plethora of severe, sometimes overwhelming backgrounds. Nearly all of them are largely influenced by QCD. Therefore it seems fair to say that the success of the LHC in finding new physics may very well depend on a deep and detailed understanding of old physics, like QCD. Examples for this include, among others, the central-jet veto for the vector boson fusion channel for Higgs production or topologies, where gauge bosons emerge in association with many jets, a background for many search channels. In a reflection on increased needs by the experimental community, aiming at higher precision, incorporation of new physics models and so on, the work horses of old have undergone serious renovation efforts, resulting in new, improved versions of the respective codes, namely PYTHIA8 [5] and HERWIG++ [6]. In addition a completely new code, SHERPA [7], has been constructed and is in the process of maturing. The status of this code is the topic of this contribution. SHERPA's hallmark property is the inclusion of higher-order tree-level QCD contributions, leading to an improved modelling of jet production. They are introduced through a full-fledged matrix element generator, AMEGIC++ [8], which is capable of generating matrix elements and corresponding phase space mappings for processes with multi-particle final states in various models, including the Standard Model, anomalous gauge triple and quadruple couplings according to [9, 10], the Minimal Supersymmetric Standard Model with Feynman rules from [11], the ADD-model of extra dimensions [12, 13], and a model with an extra U(1) singlet coupling to the Higgs boson only [14]. The code has been thoroughly tested and validated [15]. This code, however, is limited, especially in the treatment of many ({ge} 6) external QCD particles. Therefore, in the near future, SHERPA will incorporate another, new matrix element generator, COMIX, which is based on Berends-Giele recursion relations [16] and color-dressing [17] rather than color-ordering. In Tabs. 1 and 2 some example cross sections for gg {yields} ng at fixed energies and pp {yields} b{bar b} + n jets obtained with this program are exhibited and compared to those from other programs. In addition, concerning the calculation of higher-order matrix elements and cross sections, there have been first steps towards an automation of such calculations at truly next-to leading order accuracy. They manifest themselves in the implementation of a procedure [19] to fully automatically construct and evaluate Catani-Seymour dipole subtraction terms [20] for the real part of such NLO calculations. The results from the matrix element calculations are merged with the subsequent parton shower through the formalism of [21, 22]. The results of its implementation in SHERPA [23] has recently been compared with other algorithms [24]. Although there remains some dispute about the theoretical equivalence of the different approaches, the overall results show satisfying agreement with each other, such that they can be used with confidence for data analysis.

  8. Developer | OpenEI Community

    Open Energy Info (EERE)

    > Developer > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: Big Data Type Term Title Author Replies Last Post sort icon Blog entry Big Data Visualize...

  9. Developer | OpenEI Community

    Open Energy Info (EERE)

    New Result Formats on OpenEI Jweers 25 Mar 2013 - 12:22 Blog entry developer OpenEI maintenance March 8-9, 2013 Rmckeel 8 Mar 2013 - 14:23 Blog entry developer Semantic Mediawiki...

  10. Development of MP3 Technologies

    Office of Scientific and Technical Information (OSTI)

    Development of MP3 Technologies Impact of Basic Research on Innovation - Edited excerpts from American Competitiveness Initiative, February 2006...

  11. Development of MP3 Technologies

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Development of MP3 Technologies Impact of Basic Research on Innovation - Edited excerpts from American Competitiveness Initiative, February 2006

  12. Leadership Development | Argonne National Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Apply for a Job Connect with Argonne LinkedIn Facebook Twitter YouTube Google+ More Social Media » Leadership Development Argonne's excellence and innovation is driven by exemplary leadership. At Argonne, select scientific and support staff are actively identified for, developed into, and recognized in leadership positions. Leadership Development programs are offered for first-level supervisors through executive leaders and focus on developing proficiency in an array of relevant skill sets and

  13. Seneca Nation - Energy Organization Development

    Energy Savers [EERE]

    NATION SENECA NATION Energy Organizational Development Energy Organizational Development A A " " First Steps First Steps " " Grant Grant November 8, 2007 November 8, 2007 SENECA NATION SENECA NATION In appreciation & Acknowledgment: In appreciation & Acknowledgment: - - Seneca Nation Council Seneca Nation Council Arlene Arlene Bova Bova , Councilor & Energy , Councilor & Energy development advocate development advocate - - Dept. of Energy, Tribal Energy Dept.

  14. Developer Resources | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Developer Resources Developer Resources Apps for Energy Apps for Energy The Energy Department is challenging developers to use the Green Button data access program to bring residential and commercial utility data to life with fun and creative apps. Read more Learn about Green Button Learn about Green Button Apps for Energy submissions must use Green Button data. To learn more, start here. Read more NREL Resources NREL Resources NREL offers a number resources for Green Button app developers. Find

  15. Technology Development | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Development Technology Development OE supports a portfolio of technology development and deployment programs that will modernize our Nation's electric delivery system. To be successful, it is essential that key stakeholders be involved in this enterprise, including federal and state government agencies, electric power companies, equipment manufacturers, systems developers, and consumers, and work together toward a shared vision of the future, with full understanding of each other's respective

  16. GETEM Development | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Development GETEM Development GETEM Development presentation at the April 2013 peer review meeting held in Denver, Colorado. PDF icon mines_getem_peer2013.pdf More Documents & Publications U.S. DOE Geothermal Electricity Technology Evaluation Model (GETEM) Webinar Presentation track 1: systems analysis | geothermal 2015 peer review Economic Impact Analysis for EGS

  17. Community-Driven Development Decision Tools for Rural Development...

    Open Energy Info (EERE)

    (CDD) investment programmes as a way to further enabling rural poor people to overcome poverty in WCA." References "Community-Driven Development Decision Tools" Retrieved from...

  18. Stage 3c: Developing and Assessing Low Emissions Development...

    Open Energy Info (EERE)

    Low Emissions Development Scenarios Jump to: navigation, search Stage 3 LEDS Home Introduction to Framework Assess current country plans, policies, practices, and capacities...

  19. Energy Department Develops Regulatory Roadmap to Spur Geothermal Energy Development

    Broader source: Energy.gov [DOE]

    The Energy Department today issued a Geothermal Regulatory Roadmap that will help developers navigate regulatory requirements at every level of government to deploy geothermal energy projects.

  20. Sustainable Urban Development Priorities - Development of a Rapid...

    Open Energy Info (EERE)

    investments, transport interventions and policies, and will be developed with the involvement of the stakeholders to identify existing mobility patterns and deficiencies....

  1. Assessing Development Impacts Associated with Low Emission Development...

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    ... As opposed to programs strictly focused on GHG emission mitigation, LEDS actions are aligned with the development goals of the country, such as poverty alleviation, economic ...

  2. Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    OF IMAGING We require: (1) a high quality ion beam, (2) computer vision and image processing techniques for isolating and re- constructing the beam, and (3) wavelengths suitable...

  3. Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    tube PMT detector at the exit slit. One monochromator is an f 8.6 Czerny-Turner design with 500 mm focal length Jarrell-Ash, 1.6 nm mm dispersion with 1180...

  4. NREL: Technology Deployment - Project Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Project Development By employing our project development models, NREL offers a broad range of advisory services that are based off commercial practices and support the entire project development process to help reduce the risks associated with energy efficiency and renewable energy projects. This includes policy and regulatory analysis, financing alternatives, project management, proposal reviews, and project risk and technology assessments. Policy and Regulatory Analysis NREL analyzes federal

  5. USDA Rural Development Energy Program

    Energy Savers [EERE]

    Development Energy Programs Tedd Buelow Native American Coordinator DOE Tribal Energy Program Review November 16, 2009 USDA Rural Development 4 Types of Program Delivery - Guaranteed Loans - Direct Loans - Grants - Payments 3 Program Areas - Rural Business and Cooperative - Rural Housing and Community Facilities - Rural Utilities DOE Tribal Energy Program Review November 16, 2009 USDA Rural Development Organizational Structure National Office State Directors Area Directors Program Directors

  6. ORISE: Instructional Design and Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Instructional Design and Development The Oak Ridge Institute for Science and Education (ORISE) works with government agencies and organizations to create customized training and instructional design programs, from traditional classroom teaching to online education. ORISE uses a multi-step process to define the instructional design and development needs. Our process includes: Defining the target audience and objectives Designing and developing the program and materials Piloting, delivering and

  7. WINDExchange: Education and Workforce Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Education Printable Version Bookmark and Share Workforce Development Collegiate Wind Competition Wind for Schools Project School Project Locations Education & Training Programs Curricula & Teaching Materials Resources Education and Workforce Development WINDExchange offers resources for anyone wishing to learn about wind energy at any level. Learn about workforce development initiatives, including the U.S. Department of Energy Collegiate Wind Competition, the Wind for Schools project,

  8. Pompano subsea development -- Testing program

    SciTech Connect (OSTI)

    Nelson, R.; Berger, R.; Tyer, C.

    1996-12-31

    System reliability is essential for the economic success of any subsea oil and gas development. Testing programs can be developed to prove system reliability while still adhering to cost and schedule constraints. This paper describes a three-tiered equipment testing program that was employed for the Pompano Phase 2 subsea system. Program objectives, test descriptions, procedure development and test execution are discussed in detail. Lessons learned throughout the tests are also presented.

  9. Policy Development | Department of Energy

    Energy Savers [EERE]

    Policy Development Policy Development Policy Development Project Management Policy and Systems (PM-30) is working to update all Project Management related orders, guides, handbooks, and standard operating procedures that the Office of Project Management Oversight and Assessments (PM) has published. The primary focus of the updates are to insure that the orders and guides, handbooks and SOPs reflect the latest guidance that the Secretary of the Energy has outlined in his memorandum dated December

  10. MPAS-Ocean Development Update

    SciTech Connect (OSTI)

    Jacobsen, Douglas W.; Ringler, Todd D.; Petersen, Mark R.; Jones, Philip W.; Maltrud, Mathew E.

    2012-06-13

    The Model for Prediction Across Scales (MPAS) is a modeling framework developed jointly between NCAR and LANL, built to allow core developers to: rapidly develop new dynamical cores, and leverage improvements made to shared codes. MPAS-Ocean (MPAS-O) is a functioning ocean model capable of high resolution, or highly vairable resolution simulations. The first MPAS-O publication is expected by the end of the year.

  11. Ethiopian Development Research Institute | Open Energy Information

    Open Energy Info (EERE)

    Ethiopian Development Research Institute Jump to: navigation, search Logo: Ethiopian Development Research Institute Name: Ethiopian Development Research Institute Address: Ethiopia...

  12. Systems and Professional Development - David Brown, Director...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Systems and Professional Development - David Brown, Director, Systems & Professional Development, OAPM Systems and Professional Development - David Brown, Director, Systems & ...

  13. Project Management Career Development Program | Department of...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    are here Home Operational Management Certifications and Professional Development Project Management Career Development Program Project Management Career Development...

  14. Marine and Hydrokinetic Energy Research & Development | Department...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Research & Development Marine and Hydrokinetic Energy Research & Development Marine and Hydrokinetic Energy Research & Development Marine and Hydrokinetic Energy Research &...

  15. Carbon Capture Research and Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Center Lawrence Berkeley National Laboratory Research Institute of Innovative Energy Carbon Capture Research and Development Carbon capture and storage from fossil-based power...

  16. OpenEI Community - developer

    Open Energy Info (EERE)

    title"" >After several months of development and testing, the next generation web service for the utility rate database is finally here I encourage you to check out the...

  17. Developing Alaskan Sustainable Housing Training

    Broader source: Energy.gov [DOE]

    Hosted by the Association of Alaska Housing Authorities (AAHA), this three-day training event covers strategies and technical issues related to sustainable housing development.

  18. Winn Development | Open Energy Information

    Open Energy Info (EERE)

    with NREL Yes Partnership Type Test & Evaluation Partner Partnering Center within NREL Electricity Resources & Building Systems Integration Winn Development is a company located...

  19. Laboratory Directed Research and Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Phone Book Jobs Laboratory Directorate - Strategic Planning Office Laboratory Directed Research and Development (LDRD) LBNL LDRD Program Guidelines LDRD FY 2017 Call for...

  20. Geothermal Research and Development Programs

    Broader source: Energy.gov [DOE]

    Here you'll find links to laboratories, universities, and colleges conducting research and development (R&D) in geothermal energy technologies.

  1. Laboratory Directed Research and Development

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    To establish Department of Energy (DOE) requirements for laboratory directed research and development (LDRD) while providing the laboratory director broad flexibility for program implementation.

  2. Laboratory Directed Research and Development

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2015-04-30

    To establish Department of Energy (DOE) requirements for laboratory directed research and development (LDRD) while providing the laboratory director broad flexibility for program implementation

  3. Leadership Development | Argonne National Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    by UChicago Argonne, LLC, develops future leaders at Argonne. Each year, the Laboratory Director selects 15 employees to participate in the program along with staff from Fermi...

  4. Developer | OpenEI Community

    Open Energy Info (EERE)

    > Posts by term > Developer Content Group Activity By term Q & A Feeds Term: American Clean Skies Foundation Type Term Title Author Replies Last Post sort icon Blog entry...

  5. ENERGY RESEARCH AND DEVELOPMENT ADMINISTRATION

    Office of Legacy Management (LM)

    .' :h I : ' ENERGY RESEARCH AND DEVELOPMENT ADMINISTRATION ... Germantown to discuss the clean-up of radio- activity at ... BAO Enloe T. Ritter Nuclear Sciences Division of ...

  6. DEVELOPMENT Solutions | Open Energy Information

    Open Energy Info (EERE)

    Product: DEVELOPMENT Solutions (DS) supports investors to realise projects with sustainable applications, including in the areas of environment, energy efficiency, water...

  7. Development of a high-throughput microfluidic integrated microarray for the detection of chimeric bioweapons.

    SciTech Connect (OSTI)

    Sheppod, Timothy; Satterfield, Brent; Hukari, Kyle W.; West, Jason A. A.; Hux, Gary A.

    2006-10-01

    The advancement of DNA cloning has significantly augmented the potential threat of a focused bioweapon assault, such as a terrorist attack. With current DNA cloning techniques, toxin genes from the most dangerous (but environmentally labile) bacterial or viral organism can now be selected and inserted into robust organism to produce an infinite number of deadly chimeric bioweapons. In order to neutralize such a threat, accurate detection of the expressed toxin genes, rather than classification on strain or genealogical decent of these organisms, is critical. The development of a high-throughput microarray approach will enable the detection of unknowns chimeric bioweapons. The development of a high-throughput microarray approach will enable the detection of unknown bioweapons. We have developed a unique microfluidic approach to capture and concentrate these threat genes (mRNA's) upto a 30 fold concentration. These captured oligonucleotides can then be used to synthesize in situ oligonucleotide copies (cDNA probes) of the captured genes. An integrated microfluidic architecture will enable us to control flows of reagents, perform clean-up steps and finally elute nanoliter volumes of synthesized oligonucleotides probes. The integrated approach has enabled a process where chimeric or conventional bioweapons can rapidly be identified based on their toxic function, rather than being restricted to information that may not identify the critical nature of the threat.

  8. 2013 Nuclear Workforce Development Day

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nuclear Energy Impact Topics: Today's & Tomorrow's New Nuclear Energy Construction & the Workforce Outlook  Current New Nuclear Energy Construction Projects  Small Modular Reactor Developments  Nuclear Workforce Demo Moderator: Nora Swanson - Workforce Development Coordinator Southern Company Panel Members: Scott Macfarland - Manager, Corporate Workforce Planning SCANA Corporation Randy Johnson - Vice President, Operational Readiness Vogtle 3 &4 Southern Company Mary

  9. Risk perception in developing countries

    SciTech Connect (OSTI)

    Wilbanks, T.J.; Rayner, S.F.

    1985-02-15

    The paper briefly reviews: (1) what risk perception means to most people in developing countries; (2) some of the modern-technology-related risks to which people in these countries are exposed; and (3) some research evidence about risk perception that gives hints about how such perceptions will evolve in developing countries. (ACR)

  10. Advanced Emissions Control Development Program

    SciTech Connect (OSTI)

    A.P.Evans; K.E. Redinger; M.J. Holmes

    1998-04-01

    The objective of the Advanced Emissions Control Development Program (AECDP) is to develop practical, cost-effective strategies for reducing the emissions of air toxics from coal-fired boilers. Ideally, the project aim is to effectively control air toxic emissions through the use of conventional flue gas cleanup equipment such as electrostatic precipitators (ESPS), fabric filters (baghouse), and wet flue gas desulfurization. Development work to date has concentrated on the capture of mercury, other trace metals, fine particulate and hydrogen chloride. Following the construction and evaluation of a representative air toxics test facility in Phase I, Phase II focused on the evaluation of mercury and several other air toxics emissions. The AECDP is jointly funded by the United States Department of Energy's Federal Energy Technology Center (DOE), the Ohio Coal Development Office within the Ohio Department of Development (oCDO), and Babcock& Wilcox-a McDermott company (B&W).

  11. Small Talk: Cell-to-Cell Communication in Bacteria

    ScienceCinema (OSTI)

    Bassler, Bonnie [Princeton University, Princeton, New Jersey, United States

    2010-01-08

    Cell-cell communication in bacteria involves the production, release, and subsequent detection of chemical signaling molecules called autoinducers. This process, called quorum sensing, allows bacteria to regulate gene expression on a population-wide scale. Processes controlled by quorum sensing are usually ones that are unproductive when undertaken by an individual bacterium but become effective when undertaken by the group. For example, quorum sensing controls bioluminescence, secretion of virulence factors, biofilm formation, sporulation, and the exchange of DNA. Thus, quorum sensing is a mechanism that allows bacteria to function as multi-cellular organisms. Bacteria make, detect, and integrate information from multiple autoinducers, some of which are used exclusively for intra-species communication while others enable communication between species. Research is now focused on the development of therapies that interfere with quorum sensing to control bacterial virulence.

  12. Rhizosphere effect of colonizer plant species on the development of soil microbial community during primary succession on postmining sites

    SciTech Connect (OSTI)

    Elhottova, D.; Kristufek, V.; Maly, S.; Frouz, J.

    2009-07-01

    The impact of pioneer plant species Tussilago farfara on structural, functional, and growth characterization of microbial community colonizing the spoil colliery substrate was studied in a laboratory microcosm experiment. Microcosms consisting of spoil substrate (0.7 dm{sup 3} of tertiary alkaline clay sediment from Sokolov brown-coal mine area) from a pioneer site (without vegetation, 5 years after heaping) were cultivated in a greenhouse with one plant of this species. Plant roots substantially increased microbial diversity and biomass after one season (7 months) of cultivation. Roots influenced the microbial community and had nearly twice the size, higher growth, and metabolic potential in comparison to the control. The development of microbial specialists improves the plant nutrient status. Bacterial nitrogen (N{sub 2}) fixators (Bradyrhizobium japonicum, Rhizobium radiobacter) and arbuscular mycorrhizal fungi were confirmed in the rhizosphere of Tussilago farfara.

  13. Business Development Executive (BDE) Program

    SciTech Connect (OSTI)

    Rice, E.J. "Woody"; Frederick, W. James

    2005-12-05

    The IPST BDE (Institute of Paper Science and Technology Business Development Executive) program was initiated in 1997 to make the paper industry better aware of the new manufacturing technologies being developed at IPST for the U.S. pulp and paper industry's use. In April 2000, the BDE program management and the 20 BDEs, all retired senior level industry manufacturing and research executives, were asked by Ms. Denise Swink of OIT at DOE to take the added responsibility of bringing DOE developed energy conservation technology to the paper industry. This project was funded by a DOE grant of $950,000.

  14. Lower Sioux Wind Feasibility & Development

    SciTech Connect (OSTI)

    Minkel, Darin

    2012-04-01

    This report describes the process and findings of a Wind Energy Feasibility Study (Study) conducted by the Lower Sioux Indian Community (Community). The Community is evaluating the development of a wind energy project located on tribal land. The project scope was to analyze the critical issues in determining advantages and disadvantages of wind development within the Community. This analysis addresses both of the Community's wind energy development objectives: the single turbine project and the Commerical-scale multiple turbine project. The main tasks of the feasibility study are: land use and contraint analysis; wind resource evaluation; utility interconnection analysis; and project structure and economics.

  15. Pulse Wave Well Development Demonstration

    SciTech Connect (OSTI)

    Burdick, S.

    2001-02-23

    Conventional methods of well development at the Savannah River Site generate significant volumes of investigative derived waste (IDW) which must be treated and disposed of at a regulated Treatment, Storage, or Disposal (TSD) facility. Pulse Wave technology is a commercial method of well development utilizing bursts of high pressure gas to create strong pressure waves through the well screen zone, extending out into the formation surrounding the well. The patented process is intended to reduce well development time and the amount of IDW generated as well as to micro-fracture the formation to improve well capacity.

  16. Mass spectrometry for biomarker development

    SciTech Connect (OSTI)

    Wu, Chaochao; Liu, Tao; Baker, Erin Shammel; Rodland, Karin D.; Smith, Richard D.

    2015-06-19

    Biomarkers potentially play a crucial role in early disease diagnosis, prognosis and targeted therapy. In the past decade, mass spectrometry based proteomics has become increasingly important in biomarker development due to large advances in technology and associated methods. This chapter mainly focuses on the application of broad (e.g. shotgun) proteomics in biomarker discovery and the utility of targeted proteomics in biomarker verification and validation. A range of mass spectrometry methodologies are discussed emphasizing their efficacy in the different stages in biomarker development, with a particular emphasis on blood biomarker development.

  17. North Dakota Energy Workforce Development

    SciTech Connect (OSTI)

    Carter, Drake

    2014-12-29

    Bismarck State College, along with its partners (Williston State College, Minot State University and Dickinson State University), received funding to help address the labor and social impacts of rapid oilfield development in the Williston Basin of western North Dakota. Funding was used to develop and support both credit and non-credit workforce training as well as four major symposia designed to inform and educate the public; enhance communication and sense of partnership among citizens, local community leaders and industry; and identify and plan to ameliorate negative impacts of oil field development.

  18. Portable code development in C

    SciTech Connect (OSTI)

    Brown, S.A.

    1990-11-06

    With a new generation of high performance computers appearing around us on a time scale of months, a new challenge for developers of simulation codes is to write and maintain production codes that are both highly portable and maximally efficient. My contention is that C is the language that is both best suited to that goal and is widely available today. GLF is a new code written mainly in C which is intended to have all of the XRASER physics and run on any platform of interest. It demonstrates the power of the C paradigm for code developers and flexibility and ease of use for the users. Three fundamental problems are discussed: the C/UNIX development environment; the supporting tools and libraries which handle data and graphics portability issues; and the advantages of C in numerical simulation code development.

  19. Workforce development | Open Energy Information

    Open Energy Info (EERE)

    Workforce development Jump to: navigation, search This article is a stub. You can help OpenEI by expanding it. Retrieved from "http:en.openei.orgwindex.php?titleWorkforcedeve...

  20. Laboratory Directed Research and Development

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2001-01-08

    To establish the Department's, including the NNSA's, requirements for laboratory-directed research and development (LDRD) while providing the laboratory director broad flexibility for program implementation. Cancels DOE O 413.2. Canceled by DOE O 413.2B.

  1. Laboratory Directed Research and Development

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2006-04-19

    The Order establishes DOE requirements and responsibilities for laboratory directed research and development while providing laboratory directors with broad flexibility for program implementation. Cancels DOE O 413.2A. Admin Chg 1, 1-31-11.

  2. Laboratory Directed Research and Development

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2015-10-22

    To establish Department of Energy (DOE) requirements for laboratory directed research and development (LDRD) while providing the laboratory director broad flexibility for program implementation. Supersedes DOE O 413.2B.

  3. National Laboratory Impacts and Developments

    Broader source: Energy.gov [DOE]

    The Technology-to-Market program supports U.S. Department of Energy (DOE) initiatives that make access to laboratory-developed technologies and capabilities easier and increase partnerships with the clean energy private sector.

  4. Advanced LWR Nuclear Fuel Development

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Advanced Instrumentation, Information, and Control Systems Technologies Overview Bruce P. Hallbert DOE-NE Webinar September 16, 2014 Light Water Sustainability Program Goals and Scope * Develop the fundamental scientific basis to understand, predict, and measure changes in materials and structures, systems, and components (SSCs) as they age in environments * Apply this knowledge to develop and demonstrate methods and technologies that support safe and economical long-term operation of existing

  5. Developing Substitutes | Critical Materials Institute

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Developing Substitutes diagram for focus area 2, developing substitutes (A click on the org chart image will lead to a pdf version that includes hotlinks for the e-mail addresses of the leaders.) The Critical Materials Institute uses the Materials Genome approach to accelerate rare-earth replacement. CMI has invented two new phosphors in one year of research, demonstrating the power of the Materials Genome Initiative method in a collaborative public-private approach to innovation

  6. Process Development for Nanostructured Photovoltaics

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Development for Nanostructured Photovoltaics Low-Cost Nanofabrication Method To Develop Nanostructured, Dye-Sensitized Solar Cells Introduction Photovoltaic (PV) manufacturing is an emerging industry that promises a renewable, carbon-free source of energy for the United States. However, the high temperatures required to manufacture conventional silicon-based crystalline PV cells result in a manufacturing process that is energy-intensive and expensive. Dye-sensitized solar cells (DSSCs), which

  7. NREL: Photovoltaics Research - Standards Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Standards Development NREL's Photovoltaic (PV) Engineering group supports the development of national and international standards for PV engineering. Current standards lack specifics on how to precondition cadmium telluride (CdTe) and copper indium gallium diselenide (CIGS) modules so that when tested for reporting conditions, the results are well coordinated with subsequent field performance. This work examines existing and proposed methods and uses capacitance-voltage measurements, which is a

  8. NREL: Technology Deployment - Tool Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Tool Development Use NREL's models and tools to prioritize opportunities and analyze the energy savings and economics of energy efficiency, advanced transportation, and renewable energy projects. NREL develops geographic tools, interactive calculators, market and metrics databases, and mobile applications to help inform sustainable energy projects and prepare the market for emerging technologies. Geographic Tools Drawing from rich datasets, NREL builds tools that deliver interactive mapping

  9. Industry Cluster Development Grant winners

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Industry Cluster Development Grant winners Community Connections: Your link to news and opportunities from Los Alamos National Laboratory Latest Issue:Mar. 2016 all issues All Issues » submit Industry Cluster Development Grant winners Recipients include Picuris Pueblo and Rio Arriba County February 1, 2015 A new community mural on the Hunter Ford facility in Española celebrates the building's planned revitalization and the future location of the Northern New Mexico Food Hub. A new community

  10. NGNP Research and Development Status

    SciTech Connect (OSTI)

    David A. Petti

    2010-08-01

    At the inception of the Next Generation Nuclear Plant (NGNP) project, experts from the Department of Energy (DOE) national laboratories, gas reactor vendors, and universities collaborated to establish technology research and development (R&D) roadmaps. These roadmaps outlined the testing and computational development activities needed to qualify the materials and validate the modeling and simulation tools to be used in the design and safe operation of the NGNP, a helium-cooled, high temperature gas reactor (HTGR).

  11. Energy Education & Workforce Development

    Office of Environmental Management (EM)

    I. Introduction of the Energy Literacy and Energy 101 Initiatives -Michelle Fox & Matt Garcia II. Energy 101 Curricular Framework Development - Jim Turner III. Energy 101 Implementation: Course Development, Approval, Transferability * University of Maryland 'Energy 101'- -Leigh Abts * Harford Community College 'Energy 101' -Tami Imbierowicz * Energy 101 NTER Module Concept-- Stephanie Moore IV. Next steps - Ellen Vaughan V. Online Forum-Panel Q & A The 'Energy 101' Webinar #Energy101

  12. Energy and Mineral Development Program

    Office of Environmental Management (EM)

    - Federal Register Solicitation ◦ FY 2012 very soon ◦ Average 60-90+ days response from tribes Annual Funding Program - Energy and Mineral Development Projects ◦ Renewable: Biomass (Woody, Waste-to-Energy), Wind, Hydroelectric, Geothermal, and Solar ◦ Oil, Gas, and Coal ◦ Mineral - Pre-Development work: ◦ Resource Assessment/Exploration studies ◦ Feasibility studies ◦ Market studies In previous years a por tion of the program has been earmarked for renewable energy projects and

  13. Superconducting magnet development in Japan

    SciTech Connect (OSTI)

    Yasukochi, K.

    1983-05-01

    The present state of R and D works on the superconducting magnet and its applications in Japan are presented. On electrical rotating machines, 30 MVA superconducting synchronous rotary condenser (Mitsubishi and Fuji) and 50 MVA generator are under construction. Two ways of ship propulsion by superconducting magnets are developing. A superconducting magnetically levitated and linear motor propelled train ''MAGLEV'' was developed by the Japan National Railways (JNR). The superconducting magnet development for fusion is the most active field in Japan. The Cluster Test program has been demonstrated on a 10 T Nb/sub 3/Sn coil and the first coil of Large Coil Task in IEA collaboration has been constructed and the domestic test was completed in JAERI. These works are for the development of toroidal coils of the next generation tokamak machine. R and D works on superconducting ohmic heating coil are in progress in JAERI and ETL. The latter group has constructed 3.8 MJ pulsed coil. A high ramp rate of changing field in pulsed magnet, 200 T/s, has been tested successfully. High Energy Physics Laboratory (KEK) are conducting active works. The superconducting ..mu.. meson channel and ..pi.. meson channel have been constructed and are operating successfully. KEK has also a project of big accelerator named ''TRISTAN'', which is similar to ISABELLE project of BNL. Superconducting synchrotron magnets are developed for this project. The development of superconducting three thin wall solenoid has been started. One of them, CDF, is progressing under USA-Japan collaboration.

  14. Airlift bioreactors. (Latest citations from the Biobusiness database). Published Search

    SciTech Connect (OSTI)

    Not Available

    1993-04-01

    The bibliography contains citations concerning industrial and research applications of airlift bioreactors. Citations include biofilm formation, patents, pharmaceutical production, oxygen mass transfer studies, antibiotic production, wastewater treatment, culture media aspects, and growth kinetics. Topics also explore the culturing of bacterial, fungal, insect, and animal cells. (Contains a minimum of 99 citations and includes a subject term index and title list.)

  15. Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip and 16S rRNA gene clone library sequencing

    SciTech Connect (OSTI)

    Shankar Sagaram, U.; DeAngelis, K.M.; Trivedi, P.; Andersen, G.L.; Lu, S.-E.; Wang, N.

    2009-03-01

    The bacterial diversity associated with citrus leaf midribs was characterized 1 from citrus groves that contained the Huanglongbing (HLB) pathogen, which has yet to be cultivated in vitro. We employed a combination of high-density phylogenetic 16S rDNA microarray and 16S rDNA clone library sequencing to determine the microbial community composition of symptomatic and asymptomatic citrus midribs. Our results revealed that citrus leaf midribs can support a diversity of microbes. PhyloChip analysis indicated that 47 orders of bacteria from 15 phyla were present in the citrus leaf midribs while 20 orders from phyla were observed with the cloning and sequencing method. PhyloChip arrays indicated that nine taxa were significantly more abundant in symptomatic midribs compared to asymptomatic midribs. Candidatus Liberibacter asiaticus (Las) was detected at a very low level in asymptomatic plants, but was over 200 times more abundant in symptomatic plants. The PhyloChip analysis was further verified by sequencing 16S rDNA clone libraries, which indicated the dominance of Las in symptomatic leaves. These data implicate Las as the pathogen responsible for HLB disease. Citrus is the most important commercial fruit crop in Florida. In recent years, citrus Huanglongbing (HLB), also called citrus greening, has severely affected Florida's citrus production and hence has drawn an enormous amount of attention. HLB is one of the most devastating diseases of citrus (6,13), characterized by blotchy mottling with green islands on leaves, as well as stunting, fruit decline, and small, lopsided fruits with poor coloration. The disease tends to be associated with a phloem-limited fastidious {alpha}-proteobacterium given a provisional Candidatus status (Candidatus Liberobacter spp. later changed to Candidatus Liberibacter spp.) in nomenclature (18,25,34). Previous studies indicate that HLB infection causes disorder in the phloem and severely impairs the translocation of assimilates in host plants (5,27,40). Tatineni and colleagues discovered that the HLB bacteria were unevenly distributed in phloem of bark tissue, vascular tissue of the leaf midrib, roots, and different floral and fruit parts (43). Unsuccessful attempts in culturing the pathogen are notably hampering efforts to understand its biology and pathogenesis mechanism. Using a modified Koch's Postulates approach, Jagoueix and colleagues were able to re-infect periwinkle plants from a mixed microbial community harvested from HLB diseased plants (25). Emergence of the disease in otherwise healthy plants led to the conclusion that HLB was associated with Candidatus Liberibacter sp. based on its 16S rDNA sequence (18,25). Currently, three species of the pathogen are recognized from trees with HLB disease based on 16S rDNA sequence: Ca. Liberibacter asiaticus (Las), Ca. Liberibacter africanus (Laf), and Ca. Liberibacter americanus (Lam); Las is the most prevalent species among HLB diseased trees (5,12,18,25,44). Las is naturally transmitted to citrus by the psyllid, Diaphorina citri Kuwayama, and can be artificially transmitted by grafting from citrus to citrus and dodder (Cuscuta campestris) to periwinkle (Catharanthus roseus) or tobacco (Nicotiana tabacum Xanthi) (5). Based on current research regarding the associations of Liberibacter in planta there is not enough evidence to implicate Liberibacter as the definitive causal agent of HLB disease due to its resistance to cultivation in vitro. It is possible that HLB disease may be the result of complex etiology where Liberibacter interacts with other endophytic bacteria. However, there is not enough evidence regarding its association(s) in planta to make this conclusion, nor is it known whether associated microbial communities play a role in expression of pathogenic traits. The main objective of the study was to test the hypothesis that other bacteria besides Ca. Liberibacter spp. are associated with citrus greening disease. The differences between the relative abundance, species richness and phylogenetic diversity of the microbial communitie

  16. Hualapai Tribal Utility Development Project

    SciTech Connect (OSTI)

    Hualapai Tribal Nation

    2008-05-25

    The first phase of the Hualapai Tribal Utility Development Project (Project) studied the feasibility of establishing a tribally operated utility to provide electric service to tribal customers at Grand Canyon West (see objective 1 below). The project was successful in completing the analysis of the energy production from the solar power systems at Grand Canyon West and developing a financial model, based on rates to be charged to Grand Canyon West customers connected to the solar systems, that would provide sufficient revenue for a Tribal Utility Authority to operate and maintain those systems. The objective to establish a central power grid over which the TUA would have authority and responsibility had to be modified because the construction schedule of GCW facilities, specifically the new air terminal, did not match up with the construction schedule for the solar power system. Therefore, two distributed systems were constructed instead of one central system with a high voltage distribution network. The Hualapai Tribal Council has not taken the action necessary to establish the Tribal Utility Authority that could be responsible for the electric service at GCW. The creation of a Tribal Utility Authority (TUA) was the subject of the second objective of the project. The second phase of the project examined the feasibility and strategy for establishing a tribal utility to serve the remainder of the Hualapai Reservation and the feasibility of including wind energy from a tribal wind generator in the energy resource portfolio of the tribal utility (see objective 2 below). It is currently unknown when the Tribal Council will consider the implementation of the results of the study. Objective 1 - Develop the basic organizational structure and operational strategy for a tribally controlled utility to operate at the Tribe’s tourism enterprise district, Grand Canyon West. Coordinate the development of the Tribal Utility structure with the development of the Grand Canyon West Power Project construction of the power infrastructure at Grand Canyon West. Develop the maintenance and operations capacity necessary to support utility operations. Develop rates for customers on the Grand Canyon West “mini-grid” sufficient for the tribal utility to be self-sustaining. Establish an implementation strategy for tribal utility service at Grand Canyon West Objective 2 - Develop a strategy for tribal utility takeover of electric service on the Reservation. Perform a cost analysis of Reservation electrical service. Develop an implementation strategy for tribal takeover of Reservation electrical service. Examine options and costs associated with integration of the Tribe’s wind resources.

  17. OSPREY Model Development Status Update

    SciTech Connect (OSTI)

    Veronica J Rutledge

    2014-04-01

    During the processing of used nuclear fuel, volatile radionuclides will be discharged to the atmosphere if no recovery processes are in place to limit their release. The volatile radionuclides of concern are 3H, 14C, 85Kr, and 129I. Methods are being developed, via adsorption and absorption unit operations, to capture these radionuclides. It is necessary to model these unit operations to aid in the evaluation of technologies and in the future development of an advanced used nuclear fuel processing plant. A collaboration between Fuel Cycle Research and Development Offgas Sigma Team member INL and a NEUP grant including ORNL, Syracuse University, and Georgia Institute of Technology has been formed to develop off gas models and support off gas research. Georgia Institute of Technology is developing fundamental level model to describe the equilibrium and kinetics of the adsorption process, which are to be integrated with OSPREY. This report discusses the progress made on expanding OSPREY to be multiple component and the integration of macroscale and microscale level models. Also included in this report is a brief OSPREY user guide.

  18. HTS Wire Development Workshop: Proceedings

    SciTech Connect (OSTI)

    Not Available

    1994-07-01

    The 1994 High-Temperature Superconducting Wire Development Workshop was held on February 16--17 at the St. Petersburg Hilton and Towers in St. Petersburg, Florida. The meeting was hosted by Florida Power Corporation and sponsored by the US Department of Energy`s Superconductivity Program for Electric Power Systems. The meeting focused on recent high-temperature superconducting wire development activities in the Department of Energy`s Superconductivity Systems program. The meeting opened with a general discussion on the needs and benefits of superconductivity from a utility perspective, the US global competitiveness position, and an outlook on the overall prospects of wire development. The meeting then focused on four important technology areas: Wire characterization: issues and needs; technology for overcoming barriers: weak links and flux pinning; manufacturing issues for long wire lengths; and physical properties of HTS coils. Following in-depth presentations, working groups were formed in each technology area to discuss the most important current research and development issues. The working groups identified research areas that have the potential for greatly enhancing the wire development effort. These areas are discussed in the summary reports from each of the working groups. This document is a compilation of the workshop proceedings including all general session presentations and summary reports from the working groups.

  19. Advanced Emissions Control Development Program

    SciTech Connect (OSTI)

    A. P. Evans

    1998-12-03

    McDermott Technology, Inc. (MTI) is conducting a five-year project aimed at the development of practical, cost-effective strategies for reducing the emissions of hazardous air pollutants (commonly called air toxics) from coal-fired electric utility plants. The need for air toxic emissions controls may arise as the U. S. Environmental Protection Agency proceeds with implementation of Title III of the Clean Air Act Amendment (CAAA) of 1990. Data generated during the program will provide utilities with the technical and economic information necessary to reliably evaluate various air toxics emissions compliance options such as fuel switching, coal cleaning, and flue gas treatment. The development work is being carried out using the Clean Environment Development Facility (CEDF) wherein air toxics emissions control strategies can be developed under controlled conditions, and with proven predictability to commercial systems. Tests conducted in the CEDF provide high quality, repeatable, comparable data over a wide range of coal properties, operating conditions, and emissions control systems. Development work to date has concentrated on the capture of mercury, other trace metals, fine particulate, and the inorganic species, hydrogen chloride and hydrogen fluoride.

  20. Advanced Emission Control Development Program.

    SciTech Connect (OSTI)

    Evans, A.P.

    1997-12-31

    Babcock & Wilcox (B&W) is conducting a five-year project aimed at the development of practical, cost-effective strategies for reducing the emissions of hazardous air pollutants (commonly called air toxics) from coal-fired electric utility plants. The need for air toxic emissions controls may arise as the U. S. Environmental Protection Agency proceeds with implementation of Title III of the Clean Air Act Amendment (CAAA) of 1990. Data generated during the program will provide utilities with the technical and economic information necessary to reliably evaluate various air toxics emissions compliance options such as fuel switching, coal cleaning, and flue gas treatment. The development work is being carried out using B&W`s new Clean Environment Development Facility (CEDF) wherein air toxics emissions control strategies can be developed under controlled conditions, and with proven predictability to commercial systems. Tests conducted in the CEDF provide high quality, repeatable, comparable data over a wide range of coal properties, operating conditions, and emissions control systems. Development work to date has concentrated on the capture of mercury, other trace metals, fine particulate, and the inorganic species hydrogen chloride and hydrogen fluoride.

  1. Advanced Emissions Control Development Program

    SciTech Connect (OSTI)

    M. J. Holmes

    1998-12-03

    McDermott Technology, Inc. (MTI) is conducting a five-year project aimed at the development of practical, cost-effective strategies for reducing the emissions of hazardous air pollutants (commonly called air toxics) from coal-fired electric utility plants. The need for air toxic emissions controls may arise as the U. S. Environmental Protection Agency proceeds with implementation of Title III of the Clean Air Act Amendment (CAAA) of 1990. Data generated during the program will provide utilities with the technical and economic information necessary to reliably evaluate various air toxics emissions compliance options such as fuel switching, coal cleaning, and flue gas treatment. The development work is being carried out using the Clean Environment Development Facility (CEDF) wherein air toxics emissions control strategies can be developed under controlled conditions, and with proven predictability to commercial systems. Tests conducted in the CEDF provide high quality, repeatable, comparable data over a wide range of coal properties, operating conditions, and emissions control systems. Development work to date has concentrated on the capture of mercury, other trace metals, fine particulate, and hydrogen chloride and hydrogen fluoride.

  2. Advanced Emissions Control Development Program

    SciTech Connect (OSTI)

    A. P. Evans

    1998-12-03

    Babcock & Wilcox (B&W) is conducting a five-year project aimed at the development of practical, cost-effective strategies for reducing the emissions of hazardous air pollutants (commonly called air toxics) from coal-fired electric utility plants. The need for air toxic emissions controls may arise as the U. S. Environmental Protection Agency proceeds with implementation of Title III of the Clean Air Act Amendment (CAAA) of 1990. Data generated during the program will provide utilities with the technical and economic information necessary to reliably evaluate various air toxics emissions compliance options such as fuel switching, coal cleaning, and flue gas treatment. The development work is being carried out using B&W?s new Clean Environment Development Facility (CEDF) wherein air toxics emissions control strategies can be developed under controlled conditions, and with proven predictability to commercial systems. Tests conducted in the CEDF provide high quality, repeatable, comparable data over a wide range of coal properties, operating conditions, and emissions control systems. Development work to date has concentrated on the capture of mercury, other trace metals, fine particulate, and the inorganic species hydrogen chloride and hydrogen fluoride.

  3. Electronic networking and sustainable development

    SciTech Connect (OSTI)

    Daudpota, Q.I.

    1995-12-01

    To increase the capacity of institutions in various countries to implement the ambitious plans of Agenda 21, the United Nations Development Programme (UNDP) set up the Sustainable Development Networking Programme (SDNP) to help the process of sustainable development nationally and globally. Started initially in 15 developing countries, SDNPs are considered as a medium for individuals, organizations and governments to communicate ideas, share information resources, and exchange experiences among each other and globally to learn the appropriate ways to solve our ecological problems. The paper will review the idea of SDNPs globally and will describe in detail its successful implementation in Pakistan. In a country with, hitherto, virtually no electronic mail service, the SDNP has shown how its provision has had a significant impact on obtaining useful information on environmental problems, and in one case has helped save lives. SDNP Pakistan has made an effort to demonstrate the benefits of electronic communications to wide range users in the country. Some of these will be described. It is suggested how electronic networks linking organizations and people in the developing world with experts, organizations and data sources internationally, can greatly assist developmental effort globally.

  4. Plastic Laminate Pulsed Power Development

    SciTech Connect (OSTI)

    ALEXANDER,JEFF A.; SHOPE,STEVEN L.; PATE,RONALD C.; RINEHART,LARRY F.; JOJOLA,JOHN M.; RUEBUSH,MITCHELL H.; CROWE,WAYNE; LUNDSTROM,J.; SMITH,T.; ZAGAR,D.; PRESTWICH,K.

    2000-09-01

    The desire to move high-energy Pulsed Power systems from the laboratory to practical field systems requires the development of compact lightweight drivers. This paper concerns an effort to develop such a system based on a plastic laminate strip Blumlein as the final pulseshaping stage for a 600 kV, 50ns, 5-ohm driver. A lifetime and breakdown study conducted with small-area samples identified Kapton sheet impregnated with Propylene Carbonate as the best material combination of those evaluated. The program has successfully demonstrated techniques for folding large area systems into compact geometry's and vacuum impregnating the laminate in the folded systems. The major operational challenges encountered revolve around edge grading and low inductance, low impedance switching. The design iterations and lessons learned are discussed. A multistage prototype testing program has demonstrated 600kV operation on a short 6ns line. Full-scale prototypes are currently undergoing development and testing.

  5. Historical development of the windmill

    SciTech Connect (OSTI)

    Shepherd, D.G.

    1990-12-01

    Throughout history, windmill technology represented the highest levels of development in those technical fields we now refer to as mechanical engineering, civil engineering, and aerodynamics. This report describes key stages in the technical development of windmills as prime movers -- from antiquity to construction of the well-known Smith-Putnam wind turbine generator of the 1940's, which laid the foundation for modern wind turbines. Subjects covered are windmills in ancient times; the vertical-axis Persian windmill; the horizontal-axis European windmill (including both post mills and tower mills); technology improvements in sails, controls, and analysis; the American farm windmill; the transition from windmills to wind turbines for generating electricity at the end of the 19th century; and wind turbine development in the first half of the 20th century. 43 refs.

  6. Scanning probe microscopy competency development

    SciTech Connect (OSTI)

    Hawley, M.E.; Reagor, D.W.; Jia, Quan Xi

    1998-12-31

    This is the final report of a three-year, Laboratory Directed Research and Development (LDRD) project at Los Alamos National Laboratory (LANL). The project collaborators developed an ultra-high vacuum scanning tunneling microscope (UHV-STM) capability, integrated it with existing scanning probe microscopes, and developed new, advanced air-based scanning force techniques (SPMs). Programmatic, basic, and industrially related laboratory research requires the existence of SPMs, as well as expertise capable of providing local nano-scale information. The UHV-STM capability, equipped with load-lock system and several surface science techniques, will allow introduction, examination, and reaction of surfaces prepared under well-controlled vacuum conditions, including the examination of morphology and local bonding associated with the initial stages of film growth under controlled growth conditions. The resulting capabilities will enable the authors to respond to a variety of problems requiring local characterization of conducting and nonconducting surfaces in liquids, air, and UHV.

  7. EPCOR Power Development Corp | Open Energy Information

    Open Energy Info (EERE)

    Development Corp Jump to: navigation, search Name: EPCOR Power Development Corp Place: Canada Sector: Wind energy Product: Develops, constructs and operates non-regulated power...

  8. Maan Development Company | Open Energy Information

    Open Energy Info (EERE)

    Company Jump to: navigation, search Name: Maan Development Company Place: Anman, Jordan Zip: 11195 Sector: Solar Product: Jordan-based developer of the Maan Development Area...

  9. Ewing Land Development Services | Open Energy Information

    Open Energy Info (EERE)

    Ewing Land Development Services Jump to: navigation, search Name: Ewing Land Development & Services Place: Pella, Iowa Zip: 50219 Product: Real estate development company...

  10. Silicon Border Development LLC | Open Energy Information

    Open Energy Info (EERE)

    Silicon Border Development LLC Jump to: navigation, search Name: Silicon Border Development LLC Place: Poway, California Zip: 92064 Sector: Solar Product: US-based developer of...

  11. EHN Green Energy Developments | Open Energy Information

    Open Energy Info (EERE)

    Developments Jump to: navigation, search Name: EHN Green Energy Developments Place: Spain Sector: Renewable Energy Product: Renewable energy development company, focusing on...

  12. Technological Research and Development Authority (TRDA) | Open...

    Open Energy Info (EERE)

    Research and Development Authority (TRDA) Jump to: navigation, search Logo: Technological Research and Development Authority (TRDA) Name: Technological Research and Development...

  13. Texas Water Development Board | Open Energy Information

    Open Energy Info (EERE)

    Development Board Jump to: navigation, search Logo: Texas Water Development Board Name: Texas Water Development Board Abbreviation: TWDB Address: 1700 North Congress Avenue Place:...

  14. Energy for Sustainable Development | Open Energy Information

    Open Energy Info (EERE)

    Development Jump to: navigation, search Tool Summary LAUNCH TOOL Name: Energy for Sustainable Development AgencyCompany Organization: United Nations Development Programme, United...

  15. China Solar Tower Development | Open Energy Information

    Open Energy Info (EERE)

    Tower Development Jump to: navigation, search Name: China Solar Tower Development Place: China Sector: Solar Product: Joint venture for development of solar towers in China,...

  16. Project Development and Finance | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Development and Finance Project Development and Finance Below are general resources for Tribes on energy project development and finance. Find additional resources on project ...

  17. Zero Waste Energy Development | Open Energy Information

    Open Energy Info (EERE)

    Energy Development Jump to: navigation, search Name: Zero Waste Energy Development Place: California Product: California-based partnership created to develop Zanker Road Biogas...

  18. Wind Energy Career Development Program

    SciTech Connect (OSTI)

    Gwen Andersen

    2012-03-29

    Saint Francis University has developed curriculum in engineering and in business that is meeting the needs of students and employers (Task 1) as well as integrating wind energy throughout the curriculum. Through a variety of approaches, the University engaged in public outreach and education that reached over 2,000 people annually (Task 2). We have demonstrated, through the success of these programs, that students are eager to prepare for emerging jobs in alternative energy, that employers are willing to assist in developing employees who understand the broader business and policy context of the industry, and that people want to learn about wind energy.

  19. Solar photovoltaics for development applications

    SciTech Connect (OSTI)

    Shepperd, L.W.; Richards, E.H.

    1993-08-01

    This document introduces photovoltaic technology to individuals and groups specializing in development activities. Examples of actual installations illustrate the many services supplied by photovoltaic systems in development applications, including water pumping, lighting, health care, refrigeration, communications, and a variety of productive uses. The various aspects of the technology are explored to help potential users evaluate whether photovoltaics can assist them in achieving their organizational goals. Basic system design, financing techniques, and the importance of infrastructure are included, along with additional sources of information and major US photovoltaic system suppliers.

  20. Seneca Nation - Energy Organization Development

    Energy Savers [EERE]

    NATION Energy Organizational Development A "First Steps" Grant 11/1/08 - 12/31/08 SENECA NATION  In appreciation & Acknowledgment: - Seneca Nation Council  Arlene Bova, Llona LeRoy, Councilors & energy development Advocates - Dept. of Energy, Tribal Energy Program  First Steps Grant for Strategic Energy Planning  NREL - Anemometer Loan Program  First Steps Grant for Energy Organizational Planning - Dept. of Interior, Div. of Energy Resource & Mineral

  1. Development of an ACP facility

    SciTech Connect (OSTI)

    Gil-Sung You; Won-Myung Choung; Jeong-Hoe Ku; il-Je Cho; Dong-Hak Kook; Kie-Chan Kwon; Eun-Pyo Lee; Ji-Sup Yoon; Seong-Won Park; Won-Kyung Lee

    2007-07-01

    KAERI has been developing an advanced spent fuel conditioning process (ACP). The ACP facility for a process demonstration consists of two air-sealed type hot cells. The safety analysis results showed that the facility was designed safely. The relevant integrated performance tests were also carried out successfully. (authors)

  2. Human factors in software development

    SciTech Connect (OSTI)

    Curtis, B.

    1986-01-01

    This book presents an overview of ergonomics/human factors in software development, recent research, and classic papers. Articles are drawn from the following areas of psychological research on programming: cognitive ergonomics, cognitive psychology, and psycholinguistics. Topics examined include: theoretical models of how programmers solve technical problems, the characteristics of programming languages, specification formats in behavioral research and psychological aspects of fault diagnosis.

  3. Laboratory Directed Research and Development

    Broader source: Directives, Delegations, and Requirements [Office of Management (MA)]

    2006-04-19

    The order establishes DOE requirements for laboratory directed research and development (LDRD) while providing the laboratory director broad flexibility for program implementation. Cancels DOE O 413.3A. Admin Chg 1, dated 1-31-11, cancels DOE O 413.2B. Certified 7-14-2011.

  4. Renewable Energy Project Development and Finance: Advanced Development Concepts

    Energy Savers [EERE]

    Process and Structures Course Outline What we will cover...  About the DOE Office of Indian Energy Education Initiative  Project Financing Structures - Direct Ownership - Partnership Flip - Sale Leaseback - Inverted Lease/Lease Pass-Through  Additional Information and Resources 2 Introduction The U.S. Department of Energy (DOE) Office of Indian Energy Policy and Programs is responsible for assisting Tribes with energy planning and development, infrastructure, energy costs, and

  5. NOx sensor development | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    sensor development NOx sensor development PDF icon pm005_glass_2012_o.pdf More Documents & Publications NOxsensor development NOx Sensor Development Vehicle Technologies Office: 2013 Propulsion Materials R&D Annual Progress Report

  6. Rural Cooperative Geothermal Development Electric & Agriculture...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Rural Cooperative Geothermal Development Electric & Agriculture Rural Cooperative Geothermal Development Electric & Agriculture DOE 2010 Geothermal Program Peer Review; Low ...

  7. Geothermal Electricity Technology Evaluation Model (GETEM) Development...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Electricity Technology Evaluation Model (GETEM) Development Geothermal Electricity Technology Evaluation Model (GETEM) Development Project objective: Provide a tool for estimating...

  8. Kerala Industrial Infrastructure Development Corporation Kinfra...

    Open Energy Info (EERE)

    Kerala Industrial Infrastructure Development Corporation Kinfra Jump to: navigation, search Name: Kerala Industrial Infrastructure Development Corporation (Kinfra) Place:...

  9. Xishuangbanna Tianshengqiao Hydropower Development Co Ltd | Open...

    Open Energy Info (EERE)

    Tianshengqiao Hydropower Development Co Ltd Jump to: navigation, search Name: Xishuangbanna Tianshengqiao Hydropower Development Co., Ltd. Place: Xishuangbanna City, Yunnan...

  10. Developing an Evaluation Measurement, and Verification Plan:...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Developing an Evaluation Measurement, and Verification Plan: Residential Retrofits Developing an Evaluation Measurement, and Verification Plan: Residential Retrofits DOE's...

  11. Multidimensional simulation and chemical kinetics development...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Multidimensional simulation and chemical kinetics development for high efficiency clean combustion engines Multidimensional simulation and chemical kinetics development for high...

  12. Sandia Energy - Conventional Water Power: Technology Development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Technology Development Home Stationary Power Energy Conversion Efficiency Water Power Conventional Water Power: Technology Development Conventional Water Power: Technology...

  13. CLEERS Coordination & Joint Development of Benchmark Kinetics...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    More Documents & Publications CLEERS Coordination & Joint Development of Benchmark Kinetics for LNT & SCR CLEERS Coordination & Development of Catalyst Process Kinetic...

  14. CLEERS Coordination & Development of Catalyst Process Kinetic...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    More Documents & Publications CLEERS Coordination & Joint Development of Benchmark Kinetics for LNT & SCR CLEERS Coordination & Joint Development of Benchmark Kinetics...

  15. Regulatory Considerations for Developing Distributed Generation...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Regulatory Considerations for Developing Distributed Generation Projects Webinar May 23, 2012 Regulatory Considerations for Developing Distributed Generation Projects Webinar May...

  16. Advanced Modular Inverter Technology Development

    SciTech Connect (OSTI)

    Adam Szczepanek

    2006-02-04

    Electric and hybrid-electric vehicle systems require an inverter to convert the direct current (DC) output of the energy generation/storage system (engine, fuel cells, or batteries) to the alternating current (AC) that vehicle propulsion motors use. Vehicle support systems, such as lights and air conditioning, also use the inverter AC output. Distributed energy systems require an inverter to provide the high quality AC output that energy system customers demand. Today's inverters are expensive due to the cost of the power electronics components, and system designers must also tailor the inverter for individual applications. Thus, the benefits of mass production are not available, resulting in high initial procurement costs as well as high inverter maintenance and repair costs. Electricore, Inc. (www.electricore.org) a public good 501 (c) (3) not-for-profit advanced technology development consortium assembled a highly qualified team consisting of AeroVironment Inc. (www.aerovironment.com) and Delphi Automotive Systems LLC (Delphi), (www.delphi.com), as equal tiered technical leads, to develop an advanced, modular construction, inverter packaging technology that will offer a 30% cost reduction over conventional designs adding to the development of energy conversion technologies for crosscutting applications in the building, industry, transportation, and utility sectors. The proposed inverter allows for a reduction of weight and size of power electronics in the above-mentioned sectors and is scalable over the range of 15 to 500kW. The main objective of this program was to optimize existing AeroVironment inverter technology to improve power density, reliability and producibility as well as develop new topology to reduce line filter size. The newly developed inverter design will be used in automotive and distribution generation applications. In the first part of this program the high-density power stages were redesigned, optimized and fabricated. One of the main tasks was to design and validate new gate drive circuits to provide the capability of high temp operation. The new power stages and controls were later validated through extensive performance, durability and environmental tests. To further validate the design, two power stages and controls were integrated into a grid-tied load bank test fixture, a real application for field-testing. This fixture was designed to test motor drives with PWM output up to 50kW. In the second part of this program the new control topology based on sub-phases control and interphase transformer technology was successfully developed and validated. The main advantage of this technology is to reduce magnetic mass, loss and current ripple. This report summarizes the results of the advanced modular inverter technology development and details: (1) Power stage development and fabrication (2) Power stage validation testing (3) Grid-tied test fixture fabrication and initial testing (4) Interphase transformer technology development

  17. Project Development Resources | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Project Development Resources Project Development Resources Below are resources for Tribes on developing renewable energy projects. Browse additional project development resources. A Guide to Community Solar: Utility, Private, and Non-Profit Project Development A resource for community solar project development aimed at community organizers, solar advocates, government officials, and utility managers. Provides information on various community solar project models (utility-sponsored, special

  18. Learning and Workforce Development | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Services » Learning and Workforce Development Learning and Workforce Development Learning Learn about our learning and development planning, mandatory training compliance reporting, and professional skills and technical training. Workforce Development Find links to services that we provide to support our DOE employees through our corporate assessment, evaluation, organizational development and leadership development. Browse by Role Search for tools, information, and programs specific to your

  19. Thermal hydraulics development for CASL

    SciTech Connect (OSTI)

    Lowrie, Robert B

    2010-12-07

    This talk will describe the technical direction of the Thermal-Hydraulics (T-H) Project within the Consortium for Advanced Simulation of Light Water Reactors (CASL) Department of Energy Innovation Hub. CASL is focused on developing a 'virtual reactor', that will simulate the physical processes that occur within a light-water reactor. These simulations will address several challenge problems, defined by laboratory, university, and industrial partners that make up CASL. CASL's T-H efforts are encompassed in two sub-projects: (1) Computational Fluid Dynamics (CFD), (2) Interface Treatment Methods (ITM). The CFD subproject will develop non-proprietary, scalable, verified and validated macroscale CFD simulation tools. These tools typically require closures for their turbulence and boiling models, which will be provided by the ITM sub-project, via experiments and microscale (such as DNS) simulation results. The near-term milestones and longer term plans of these two sub-projects will be discussed.

  20. Flexible, secure agent development framework

    DOE Patents [OSTI]

    Goldsmith; Steven Y. (Rochester, MN)

    2009-04-07

    While an agent generator is generating an intelligent agent, it can also evaluate the data processing platform on which it is executing, in order to assess a risk factor associated with operation of the agent generator on the data processing platform. The agent generator can retrieve from a location external to the data processing platform an open site that is configurable by the user, and load the open site into an agent substrate, thereby creating a development agent with code development capabilities. While an intelligent agent is executing a functional program on a data processing platform, it can also evaluate the data processing platform to assess a risk factor associated with performing the data processing function on the data processing platform.

  1. Energy storage research and development

    SciTech Connect (OSTI)

    None, None

    2008-01-01

    In 2007, US consumers experienced the highest sustained gasoline prices in recent history, in real terms, including those seen in the early 1980s1. Partially as a result of the $3/gallon gasoline prices, sales of hybrid electric vehicles (HEVs) increased almost 60% in 20072, and several automakers announced plans to develop plug-in hybrid electric vehicles (PHEVs)3. However, total sales of HEVs remained in the 2-3 percent range of all vehicle sales. An important step for continued HEV market penetration, as well as electrifying the nation's personal transportation, is the development of cost effective, long lasting, and abuse tolerant Li-ion batteries.

  2. Nucleation and condensation model development

    SciTech Connect (OSTI)

    Fry, H.; Lyman, J.; Breshears, D.; Zerkle, D.; Wilson, C.; Hewitt, C.; Gallegos, D.

    1996-09-01

    This is a final report of a one-year, Laboratory-Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). The purpose of this project was to bring to maturity a theoretical and experimental capability of the Laboratory to perform basic research in nucleation and condensation of water vapor. This report provides a general description of this capability and summarizes specific work in two areas: development and use of a combustive flow facility (CFF) to measure water monomer depletion in a supersonic nozzle and nucleation pulse experiments for investigation of transport effects on water droplet growth dynamics. The later work was performed in collaboration with Dr. Wehrner Strey in Goettingen, Germany. Preliminary water absorption data from the CFF experiment are presented. The nucleation pulse data is described along with an analysis that shows under the condition of the experiment the growth rate of water droplets is limited by monomer diffusion.

  3. Environmental development plan: coal liquefaction

    SciTech Connect (OSTI)

    Not Available

    1980-08-01

    This Environmental Development plan (EDP) examines environmental concerns that are being evaluated for the technologies in DOE's Coal Liquefaction Program. It identifies the actions that are planned or underway to resolve these concerns while the technologies are being developed. Research is scheduled on the evaluation and mitigation of potential environmental impacts. This EDP updates the FY 1977 Coal Liquefaction Program EDP. Chapter II describes the DOE Coal Liquefaction Program and focuses on the Solvent Refined Coal (SRC), H-Coal, and Exxon donor solvent (EDS) processes because of their relatively advanced R and D stages. The major unresolved environmental concerns associated with the coal liquefaction subactivities and projects are summarized. The concerns were identified in the 1977 EDP's and research was scheduled to lead to the resolution of the concerns. Much of this research is currently underway. The status of ongoing and planned research is shown in Table 4-1.

  4. development-plans-and-design

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Development Plans and Design Concepts for TRANSIMS Version 5 David Roden AECOM List of Authors ================ David Roden AECOM 3101 Wilson Boulevard, 4th Floor Arlington, VA This email address is being protected from spambots. You need JavaScript enabled to view it. Abstract ========= This presentation will provide an overview of the software changes planned for TRANSIMS Version 5.0 and solicit feedback from users on desirable improvements. The Version 5.0 design attempts to streamline the

  5. transims-application-and-development

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    TRANSIMS: Applications and Development Workshop : April 8-9, 2010 Organizers Dr. Hubert Ley Dr. Vadim Sokolov This email address is being protected from spambots. You need JavaScript enabled to view it. Brian Gardner Office of Planning Federal Highway Administration This email address is being protected from spambots. You need JavaScript enabled to view it. Agenda Announcement pdficon small Accompanying Materials Adobe Connect Recording Links Accompanying Materials Introduction to the TRANSIMS

  6. 2013 Nuclear Workforce Development Day

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Nuclear Workforce Development Day ∎ Tuesday, October 22, 2013 Nuclear Medicine Topics:  Pathways of Practice in Nuclear Medicine  Radiopharmacy  Patient Care  Medical Imaging & Computers Moderator: Deborah M. Gibbs, MEd, PET, CNMT Lead Nuclear Medicine / PET Facility Administrator Georgia Regents University Panel Members: Jim Corley, MS, RPh- Associate Professor Georgia Regents University George David, MS, FAAPM- Medical Physicist Georgia Regents University Dr. Gregory

  7. 2013 Nuclear Workforce Development Day

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Savannah River Site Topics:  How are Robotics, Homeland Security & SRS Related?  What are Future Careers at SRS?  Why does SRS have a Gate? Moderator: Steve Hensel - Senior Fellow Engineer Savannah River Nuclear Solutions Panel Members: Steve Tibrea - Director, Research & Development Engineering Savannah River Nuclear Solutions Steve Howell - Deputy Director, Environmental Management Operations - Savannah River Nuclear Solutions Renee Spires - Program Manager Savannah River

  8. USDA Rural Development Energy Programs

    Energy Savers [EERE]

    USDA Rural Development Energy Programs Rural Energy for America Program (REAP) Rural Business Enterprise Grant (RBEG) Value Added Producers Grant (VAPG) Community Facilities loan and grants * Grant and loan guarantee program to assist agriculture producers and rural small businesses in purchasing renewable energy systems and making energy efficiency improvements. * Based on New Farm Bill funding will be $200 million in mandatory $ * FY 14 - $50 Million * FY 15 - $50 Million * FY 16 - $50 Million

  9. GEOTHERMAL ENERGY DEVELOPMENT PAUL KRUGER

    Office of Scientific and Technical Information (OSTI)

    ENERGY DEVELOPMENT PAUL KRUGER . NOVEMBER, 1975 SGP-TR-9 DISCLAIMER This report was prepared as an account of work sponsored by an agency of the United States Government. Neither the United States Government nor any agency Thereof, nor any of their employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not

  10. Development of GREET Catalyst Module

    SciTech Connect (OSTI)

    Wang, Zhichao; Benavides, Pahola T.; Dunn, Jennifer B.; Cronauer, Donald C.

    2015-09-01

    In this report, we develop energy and material flows for the production of five different catalysts (tar reforming, alcohol synthesis, Zeolite Socony Mobil-5 [ZSM-5], Mo/Co/ ?-Al2O3, and Pt/ ?-Al2O3) and two chemicals (olivine, dimethyl ether of polyethylene glycol [DEPG]). These compounds and catalysts are now included in the Greenhouse Gases, Regulated Emissions and Energy Use in Transportation (GREET) catalyst module.

  11. Advanced LWR Nuclear Fuel Development

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    LWRS Overview and Select Research Highlights J. Busby and K. Leonard Oak Ridge National Laboratory with a host of contributors Overview Presentation for the Nuclear Energy Enabling Technologies September 15, 2015 Video Conference FY16 - Consolidated Innovative Nuclear Research * Light water reactor sustainability (LWRS) is one of the four technical areas in the Reactor Concepts Research, Development and Demonstration Program sections in the FOA. * Activities in LWRS also overlap with NEET

  12. PV Research & Development Activities

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Research & Development Activities - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Fuel Cycle Defense Waste Management

  13. Development Shop | The Ames Laboratory

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Development Shop The Ames Laboratory operates a complete machine shop. Our shop consists of the modern equipment needed to fabricate almost any conceivable device required for research project. If you have a need or any questions about the fabrication of items to support your mission in research please contact us. Our machining equipment includes: Lathes CNC Bridgeport Mills Shears Press Brake (for bending) EDM (Electronic Discharge Machining) Grinders Saws We are capable of welding nearly any

  14. Integrated Research, Development, and Deployment

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Research, Development, and Deployment - Sandia Energy Energy Search Icon Sandia Home Locations Contact Us Employee Locator Energy & Climate Secure & Sustainable Energy Future Stationary Power Energy Conversion Efficiency Solar Energy Wind Energy Water Power Supercritical CO2 Geothermal Natural Gas Safety, Security & Resilience of the Energy Infrastructure Energy Storage Nuclear Power & Engineering Grid Modernization Battery Testing Nuclear Fuel Cycle Defense Waste Management

  15. Blackfeet Nation - Energy Organization Development

    Office of Environmental Management (EM)

    Organization Development First Steps to Renewable Energy Grant Awarded by Department of Energy Presented by Jeri Lawrence Blackfeet Renewable Energy Director Introduction Introduction The Blackfeet Reservation is located in Glacier and The Blackfeet Reservation is located in Glacier and Pondera Counties of Montana. Pondera Counties of Montana. Northwestern part of the state at the eastern base Northwestern part of the state at the eastern base of the Rocky Mountains of the Rocky Mountains 1,

  16. Arctic Energy Technology Development Laboratory

    SciTech Connect (OSTI)

    Sukumar Bandopadhyay; Charles Chamberlin; Robert Chaney; Gang Chen; Godwin Chukwu; James Clough; Steve Colt; Anthony Covescek; Robert Crosby; Abhijit Dandekar; Paul Decker; Brandon Galloway; Rajive Ganguli; Catherine Hanks; Rich Haut; Kristie Hilton; Larry Hinzman; Gwen Holdman; Kristie Holland; Robert Hunter; Ron Johnson; Thomas Johnson; Doug Kame; Mikhail Kaneveskly; Tristan Kenny; Santanu Khataniar; Abhijeet Kulkami; Peter Lehman; Mary Beth Leigh; Jenn-Tai Liang; Michael Lilly; Chuen-Sen Lin; Paul Martin; Pete McGrail; Dan Miller; Debasmita Misra; Nagendra Nagabhushana; David Ogbe; Amanda Osborne; Antoinette Owen; Sharish Patil; Rocky Reifenstuhl; Doug Reynolds; Eric Robertson; Todd Schaef; Jack Schmid; Yuri Shur; Arion Tussing; Jack Walker; Katey Walter; Shannon Watson; Daniel White; Gregory White; Mark White; Richard Wies; Tom Williams; Dennis Witmer; Craig Wollard; Tao Zhu

    2008-12-31

    The Arctic Energy Technology Development Laboratory was created by the University of Alaska Fairbanks in response to a congressionally mandated funding opportunity through the U.S. Department of Energy (DOE), specifically to encourage research partnerships between the university, the Alaskan energy industry, and the DOE. The enabling legislation permitted research in a broad variety of topics particularly of interest to Alaska, including providing more efficient and economical electrical power generation in rural villages, as well as research in coal, oil, and gas. The contract was managed as a cooperative research agreement, with active project monitoring and management from the DOE. In the eight years of this partnership, approximately 30 projects were funded and completed. These projects, which were selected using an industry panel of Alaskan energy industry engineers and managers, cover a wide range of topics, such as diesel engine efficiency, fuel cells, coal combustion, methane gas hydrates, heavy oil recovery, and water issues associated with ice road construction in the oil fields of the North Slope. Each project was managed as a separate DOE contract, and the final technical report for each completed project is included with this final report. The intent of this process was to address the energy research needs of Alaska and to develop research capability at the university. As such, the intent from the beginning of this process was to encourage development of partnerships and skills that would permit a transition to direct competitive funding opportunities managed from funding sources. This project has succeeded at both the individual project level and at the institutional development level, as many of the researchers at the university are currently submitting proposals to funding agencies, with some success.

  17. MHK technology developments include current

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    technology developments include current energy conversion (CEC) devices, for example, hydrokinetic turbines that extract power from water currents (riverine, tidal, and ocean) and wave energy conversion (WEC) devices that extract power from wave motion. Sandia's MHK research leverages decades of experience in engineering, design, and analysis of wind power technologies, and its vast research complex, including high- performance computing (HPC), advanced materials and coatings, nondestructive

  18. EC RESEARCH AND DEVELOPMENT REPORT .:'

    Office of Legacy Management (LM)

    2, j ,&+~ ,:. x&+,, ; wt. d.' :?.' . ' ~~j~,,~~ &?$;i?$$,i:i~-' _' ' .. EC RESEARCH AND DEVELOPMENT REPORT .:' :' :I :I:.- : . . ' _ -a. :. _. : . . 1 . . ' y:y ,. 1. . :<,*I t..; : !,,!' :.' ...> ,I 43 .r:. :&& i pq7.q 12 w ; ;::> x ,. _ ,.l 2.. r/' -T ."."--- ,' ,;. ;' , , _,' . 2 , ' .. LEGAL NOTICE This report was prepared as an account of Government sponsored work. Neither the United States, nor the Commission, nor any person acting on behalf of the

  19. Carbon sequestration research and development

    SciTech Connect (OSTI)

    Reichle, Dave; Houghton, John; Kane, Bob; Ekmann, Jim; and others

    1999-12-31

    Predictions of global energy use in the next century suggest a continued increase in carbon emissions and rising concentrations of carbon dioxide (CO{sub 2}) in the atmosphere unless major changes are made in the way we produce and use energy--in particular, how we manage carbon. For example, the Intergovernmental Panel on Climate Change (IPCC) predicts in its 1995 ''business as usual'' energy scenario that future global emissions of CO{sub 2} to the atmosphere will increase from 7.4 billion tonnes of carbon (GtC) per year in 1997 to approximately 26 GtC/year by 2100. IPCC also projects a doubling of atmospheric CO{sub 2} concentration by the middle of next century and growing rates of increase beyond. Although the effects of increased CO{sub 2} levels on global climate are uncertain, many scientists agree that a doubling of atmospheric CO{sub 2} concentrations could have a variety of serious environmental consequences. The goal of this report is to identify key areas for research and development (R&D) that could lead to an understanding of the potential for future use of carbon sequestration as a major tool for managing carbon emissions. Under the leadership of DOE, researchers from universities, industry, other government agencies, and DOE national laboratories were brought together to develop the technical basis for conceiving a science and technology road map. That effort has resulted in this report, which develops much of the information needed for the road map.

  20. Developing Government Renewable Energy Projects

    SciTech Connect (OSTI)

    Kurt S. Myers; Thomas L. Baldwin; Jason W. Bush; Jake P. Gentle

    2012-07-01

    The US Army Corps of Engineers has retained Idaho National Laboratory (INL) to conduct a study of past INL experiences and complete a report that identifies the processes that are needed for the development of renewable energy projects on government properties. The INL has always maintained expertise in power systems and applied engineering and INLs renewable energy experiences date back to the 1980s when our engineers began performing US Air Force wind energy feasibility studies and development projects. Over the last 20+ years of working with Department of Defense and other government agencies to study, design, and build government renewable projects, INL has experienced the dos and donts for being successful with a project. These compiled guidelines for government renewable energy projects could include wind, hydro, geothermal, solar, biomass, or a variety of hybrid systems; however, for the purpose of narrowing the focus of this report, wind projects are the main topic discussed throughout this report. It is our thought that a lot of what is discussed could be applied, possibly with some modifications, to other areas of renewable energy. It is also important to note that individual projects (regardless the type) vary to some degree depending on location, size, and need but in general these concepts and directions can be carried over to the majority of government renewable energy projects. This report focuses on the initial development that needs to occur for any project to be a successful government renewable energy project.

  1. Environmental boundaries to energy development

    SciTech Connect (OSTI)

    Trivelpiece, A.W.

    1989-01-01

    Public concern about the environment, health and safety consequences of energy technology has been growing steadily for more than two decades in the United States. This concern forms an important boundary condition as the United States seeks to develop a new National Energy Strategy. Furthermore, the international aspects of the energy/environment interface such as acid rain global climate change and stratospheric ozone depletion are very prominent in US thinking. In fact, the energy systems of the world are becoming more closely coupled environmentally and otherwise. Now where is this coupling more important than that between the industrialized and developing world; the choices made by each will have profound effects on the other. The development of energy technologies compatible with both economic growth and improving and sustaining environmental quality represents a major R D challenge to the US and USSR. Decision about adoption of new technology and R D priorities can be improved by better measurements of how energy sources and uses are changing throughout the world and better methods to project the potential consequences of these decisions. Such projection require understanding relative risks of alternating existing and evolving technologies. All of these R D areas, technology improvement energy system monitoring and projection and comparative risk assessment are the topics of this seminar. Progress in each may be enhanced by collaboration and cooperation between our two countries. 7 refs., 27 figs., 5 tabs.

  2. Session: Wind industry project development

    SciTech Connect (OSTI)

    Gray, Tom; Enfield, Sam

    2004-09-01

    This first session at the Wind Energy and Birds/Bats workshop consisted of two presentations followed by a question and answer period. The session was intended to provide a general overview of wind energy product development, from the industry's perspective. Tom Gray of AWEA presented a paper titled ''State of the Wind Energy Industry in 2004'', highlighting improved performance and lower cost, efforts to address avian impacts, a status of wind energy in comparison to other energy-producing sources, and ending on expectations for the near future. Sam Enfield of Atlantic Renewable Energy Corporation presented a paper titled ''Key Factors for Consideration in Wind Plant Siting'', highlighting factors that wind facility developers must consider when choosing a site to build wind turbines and associated structures. Factors covered include wind resources available, ownership and land use patterns, access to transmission lines, accessibility and environmental impacts. The question and answer sum mary included topics related to risk taking, research and development, regulatory requirements, and dealing with utilities.

  3. DEVELOPMENT OF NEW DRILLING FLUIDS

    SciTech Connect (OSTI)

    David B. Burnett

    2003-08-01

    The goal of the project has been to develop new types of drill-in fluids (DIFs) and completion fluids (CFs) for use in natural gas reservoirs. Phase 1 of the project was a 24-month study to develop the concept of advanced type of fluids usable in well completions. Phase 1 tested this concept and created a kinetic mathematical model to accurately track the fluid's behavior under downhole conditions. Phase 2 includes tests of the new materials and practices. Work includes the preparation of new materials and the deployment of the new fluids and new practices to the field. The project addresses the special problem of formation damage issues related to the use of CFs and DIFs in open hole horizontal well completions. The concept of a ''removable filtercake'' has, as its basis, a mechanism to initiate or trigger the removal process. Our approach to developing such a mechanism is to identify the components of the filtercake and measure the change in the characteristics of these components when certain cleanup (filtercake removal) techniques are employed.

  4. Report on Advanced Detector Development

    SciTech Connect (OSTI)

    James K. Jewell

    2012-09-01

    Neutron, gamma and charged particle detection improvements are key to supporting many of the foreseen measurements and systems envisioned in the R&D programs and the future fuel cycle requirements, such as basic nuclear physics and data, modeling and simulation, reactor instrumentation, criticality safety, materials management and safeguards. This task will focus on the developmental needs of the FCR&D experimental programs, such as elastic/inelastic scattering, total cross sections and fission neutron spectra measurements, and will leverage a number of existing neutron detector development efforts and programs, such as those at LANL, PNNL, INL, and IAC as well as those at many universities, some of whom are funded under NE grants and contracts. Novel materials and fabrication processes combined with state-of-the-art electronics and computing provide new opportunities for revolutionary detector systems that will be able to meet the high precision needs of the program. This work will be closely coordinated with the Nuclear Data Crosscut. The Advanced Detector Development effort is a broadly-focused activity that supports the development of improved nuclear data measurements and improved detection of nuclear reactions and reactor conditions. This work supports the design and construction of large-scale, multiple component detectors to provide nuclear reaction data of unprecedented quality and precision. Examples include the Time Projection Chamber (TPC) and the DANCE detector at LANL. This work also supports the fabrication and end-user application of novel scintillator materials detection and monitoring.

  5. New Mexico renewable development study

    SciTech Connect (OSTI)

    Toole, Gasper [Los Alamos National Laboratory; Bent, Russell [Los Alamos National Laboratory; Ewers, Mary [Los Alamos National Laboratory

    2010-09-17

    Since the early 1990s, Los Alamos National Laboratory (LANL) has applied electric grid models and simulation software to problems of national significance. This effort continues with a variety of other projects funded by the Department of Energy (DOE), other federal and state agencies and private companies. Critical to the success of these programs is the ability to integrate regional-scale models of the electric grid, to assess the propagation of grid impacts, and to present interactively the effect of potential mitigating actions required to stabilize the grid. All of these capabilities are applied in this study, to accomplish the following goals and objectives: (1) Develop an AC power flow model representing future conditions within New Mexico's electric grid, using commercial tools accepted by the utility industry; (2) Conduct a 'screening' analysis of options for accelerating potential renewable energy development through the addition of a statewide transmission collector system; (3) Estimate total revenue needed, jobs created (temporary and permanent) plus indirect and direct impacts to the state's economy; (4) Evaluate potential cost allocation methodology; and (5) Issue a project report that will provide information for policy direction by state regulators, project developers, and legislators.

  6. Technology development life cycle processes.

    SciTech Connect (OSTI)

    Beck, David Franklin

    2013-05-01

    This report and set of appendices are a collection of memoranda originally drafted in 2009 for the purpose of providing motivation and the necessary background material to support the definition and integration of engineering and management processes related to technology development. At the time there was interest and support to move from Capability Maturity Model Integration (CMMI) Level One (ad hoc processes) to Level Three. As presented herein, the material begins with a survey of open literature perspectives on technology development life cycles, including published data on %E2%80%9Cwhat went wrong.%E2%80%9D The main thrust of the material presents a rational expose%CC%81 of a structured technology development life cycle that uses the scientific method as a framework, with further rigor added from adapting relevant portions of the systems engineering process. The material concludes with a discussion on the use of multiple measures to assess technology maturity, including consideration of the viewpoint of potential users.

  7. HuMiChip: Development of a Functional Gene Array for the Study...

    Office of Scientific and Technical Information (OSTI)

    was constructed with 81 genomes of bacterial strains with 54 from gut and 27 from oral environments, and 16 metagenomes, and used for selection of genes and probe design....

  8. Interaction Between Toxic Metals and Complex Biofilm/Mineral/Solution

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Interfaces highlights title by Alexis S. Templeton, Thomas P. Trainor, and Gordon E. Brown, Jr., Stanford University Sorption reactions on particle surfaces can dramatically affect the speciation, cycling and bioavailability of essential micronutrients (i.e. PO43-, Cu, Zn etc.) and toxic metals and metalloids (i.e. Pb, Hg, Se, As) in soils and aquatic environments. Considerable attention has been focused on understanding metal sorption reactions at a molecular/mechanistic level and the

  9. Development of silver and zinc oxide decorated nanoclay containing polymeric composites for water disinfection applications

    SciTech Connect (OSTI)

    Motshekga, Sarah C.; Ray, Suprakas Sinha; Momba, Maggie N. B.

    2015-05-22

    Contaminated drinking water has serious implications to the human health that could lead to death. The rapid growth of bacterial contamination in drinking water is alarming, and yet a robust and cost effective method with less limitation has not been developed. The current study is aimed at evaluating the performance of nanoclay composites dispersed in chitosan biopolymer as an antibacterial material. The performances of the composites were evaluated using the batch kinetic studies. Three composites of Ag-CtsB, ZnO-CtsB and Ag/ZnO-CtsB were prepared and evaluated against gram negative Escherichia coli and gram positive Enterococcus faecalis bacteria. The composites were characterized by powder X-ray diffraction, scanning electron microscope, energy dispersive spectroscopy and BET surface area measurements. Antibacterial activity results showed that the composites can be a potent bactericide material for water disinfection as they are highly effective against both gram negative and gram positive bacteria tested. Whereas both Ag-CtsB and ZnO-CtsB composites showed good antibacterial activity against bacteria with removal efficiency from 51%, best antibacterial activity was observed with Ag/ZnO-CtsB composite with removal efficiency from 78%. The results revealed that Ag/ZnO-CtsB composite is a promising bactericide that is highly effective against both gram negative and gram positive bacteria tested.

  10. Wind Development on Tribal Lands

    SciTech Connect (OSTI)

    Ken Haukaas; Dale Osborn; Belvin Pete

    2008-01-18

    Background: The Rosebud Sioux Tribe (RST) is located in south central South Dakota near the Nebraska border. The nearest community of size is Valentine, Nebraska. The RST is a recipient of several Department of Energy grants, written by Distributed Generation Systems, Inc. (Disgen), for the purposes of assessing the feasibility of its wind resource and subsequently to fund the development of the project. Disgen, as the contracting entity to the RST for this project, has completed all the pre-construction activities, with the exception of the power purchase agreement and interconnection agreement, to commence financing and construction of the project. The focus of this financing is to maximize the economic benefits to the RST while achieving commercially reasonable rates of return and fees for the other parties involved. Each of the development activities required and its status is discussed below. Land Resource: The Owl Feather War Bonnet 30 MW Wind Project is located on RST Tribal Trust Land of approximately 680 acres adjacent to the community of St. Francis, South Dakota. The RST Tribal Council has voted on several occasions for the development of this land for wind energy purposes, as has the District of St. Francis. Actual footprint of wind farm will be approx. 50 acres. Wind Resource Assessment: The wind data has been collected from the site since May 1, 2001 and continues to be collected and analyzed. The latest projections indicate a net capacity factor of 42% at a hub height of 80 meters. The data has been collected utilizing an NRG 9300 Data logger System with instrumentation installed at 30, 40 and 65 meters on an existing KINI radio tower. The long-term annual average wind speed at 65-meters above ground level is 18.2 mph (8.1 mps) and 18.7 mph (8.4 mps) at 80-meters agl. The wind resource is excellent and supports project financing.

  11. Development of MEMS photoacoustic spectroscopy

    SciTech Connect (OSTI)

    Robinson, Alex Lockwood; Eichenfield, Matthew S.; Griffin, Benjamin; Harvey, Heidi Alyssa; Nielson, Gregory N.; Okandan, Murat; Langlois, Eric; Resnick, Paul James; Shaw, Michael J.; Young, Ian; Givler, Richard C.; Reinke, Charles M.

    2014-01-01

    After years in the field, many materials suffer degradation, off-gassing, and chemical changes causing build-up of measurable chemical atmospheres. Stand-alone embedded chemical sensors are typically limited in specificity, require electrical lines, and/or calibration drift makes data reliability questionable. Along with size, these "Achilles' heels" have prevented incorporation of gas sensing into sealed, hazardous locations which would highly benefit from in-situ analysis. We report on development of an all-optical, mid-IR, fiber-optic based MEMS Photoacoustic Spectroscopy solution to address these limitations. Concurrent modeling and computational simulation are used to guide hardware design and implementation.

  12. Data mining for ontology development.

    SciTech Connect (OSTI)

    Davidson, George S.; Strasburg, Jana; Stampf, David; Neymotin,Lev; Czajkowski, Carl; Shine, Eugene; Bollinger, James; Ghosh, Vinita; Sorokine, Alexandre; Ferrell, Regina; Ward, Richard; Schoenwald, David Alan

    2010-06-01

    A multi-laboratory ontology construction effort during the summer and fall of 2009 prototyped an ontology for counterfeit semiconductor manufacturing. This effort included an ontology development team and an ontology validation methods team. Here the third team of the Ontology Project, the Data Analysis (DA) team reports on their approaches, the tools they used, and results for mining literature for terminology pertinent to counterfeit semiconductor manufacturing. A discussion of the value of ontology-based analysis is presented, with insights drawn from other ontology-based methods regularly used in the analysis of genomic experiments. Finally, suggestions for future work are offered.

  13. Energy Development Opportunities for Wyoming

    SciTech Connect (OSTI)

    Larry Demick

    2012-11-01

    The Wyoming Business Council, representing the state’s interests, is participating in a collaborative evaluation of energy development opportunities with the NGNP Industry Alliance (an industry consortium), the University of Wyoming, and the US Department of Energy’s Idaho National Laboratory. Three important energy-related goals are being pursued by the State of Wyoming: Ensuring continued reliable and affordable sources of energy for Wyoming’s industries and people Restructuring the coal economy in Wyoming Restructuring the natural gas economy in Wyoming

  14. ENERGY RESEARCH AND DEVELOPMENT ADMINISTRATION

    Office of Legacy Management (LM)

    .' :h I : ' ENERGY RESEARCH AND DEVELOPMENT ADMINISTRATION WASHINGTON, D.C. 20545 October 24, 1975 :~.. ,. Memo to Piles' CARNEGIE-MELLON S~C&RCCYCLOTRON On October 23, 1975, W. J. McCool (HQOS), E. K. Loop (HQ-OS), R. E. Allen (HQ-OS), J. Pingel (CH), B. 3. Davis (CH), R. Drucker (CR-BAO) and I met at Germantown to discuss the clean-up of radio- activity at the Saxonburg accelerator site. After discussion, we concluded acceptable criteria would include removal of all material necessary to

  15. Workforce Development Wind Projects | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Workforce Development Wind Projects Workforce Development Wind Projects This report covers the Wind and Water Power Technologies Office's workforce development wind projects from fiscal years 2008 to 2014. PDF icon Workforce Development Wind Projects.pdf More Documents & Publications Testing, Manufacturing, and Component Development Projects Wind Integration, Transmission, and Resource Assessment and Characterization Projects Environmental Wind Projects

  16. 2012 KIVA-Development | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    KIVA-Development 2012 KIVA-Development 2012 DOE Hydrogen and Fuel Cells Program and Vehicle Technologies Program Annual Merit Review and Peer Evaluation Meeting PDF icon ace014_carrington_2012_o.pdf More Documents & Publications Vehicle Technologies Office Merit Review 2013: KIVA Development Vehicle Technologies Office Merit Review 2014: 2014 KIVA Development KIVA-4 Development

  17. SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) |

    Energy Savers [EERE]

    Department of Energy SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) Form documents modifications and changes to approved assignments and courses. PDF icon SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) More Documents & Publications SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT PROGRAM (SESCDP) Candidate Developmental Assignment Evaluation SENIOR EXECUTIVE SERVICE CANDIDATE DEVELOPMENT

  18. Development of New Stainless Steel

    SciTech Connect (OSTI)

    Robert F. Buck

    2005-08-30

    A new family of innovative martensitic stainless steels, 521-A, 521-B, and 521-C has been developed by Advanced Steel Technology, LLC (Trafford, PA) as high strength fastener (bolt) materials for use at moderate temperatures in turbine engines, including steam turbines, gas turbines, and aircraft engines. The primary objective of the development program was to create a martensitic stainless steel with high strength at moderate temperatures, and which could replace the expensive nickel-based superalloy IN 718 in some fasteners applications. A secondary objective was to replace conventional 12Cr steels such as AISI 422 used as blades, buckets and shafts that operate at intermediate temperatures in turbine engines with stronger steel. The composition of the new alloys was specifically designed to produce excellent mechanical properties while integrating heat treatment steps into production to reduce energy consumption during manufacturing. As a result, production costs and energy consumption during production of rolled bar products is significantly lower than conventional materials. Successful commercialization of the new alloys would permit the installed cost of certain turbine engines to be reduced without sacrificing high availability or operational flexibility, thereby enhancing the global competitiveness of U.S. turbine engine manufacturers. Moreover, the domestic specialty steel industry would also benefit through increased productivity and reduced operating costs, while increasing their share of the international market for turbine engine fasteners, blades, buckets and shafts.

  19. Process Development for Nanostructured Photovoltaics

    SciTech Connect (OSTI)

    Elam, Jeffrey W.

    2015-01-01

    Photovoltaic manufacturing is an emerging industry that promises a carbon-free, nearly limitless source of energy for our nation. However, the high-temperature manufacturing processes used for conventional silicon-based photovoltaics are extremely energy-intensive and expensive. This high cost imposes a critical barrier to the widespread implementation of photovoltaic technology. Argonne National Laboratory and its partners recently invented new methods for manufacturing nanostructured photovoltaic devices that allow dramatic savings in materials, process energy, and cost. These methods are based on atomic layer deposition, a thin film synthesis technique that has been commercialized for the mass production of semiconductor microelectronics. The goal of this project was to develop these low-cost fabrication methods for the high efficiency production of nanostructured photovoltaics, and to demonstrate these methods in solar cell manufacturing. We achieved this goal in two ways: 1) we demonstrated the benefits of these coatings in the laboratory by scaling-up the fabrication of low-cost dye sensitized solar cells; 2) we used our coating technology to reduce the manufacturing cost of solar cells under development by our industrial partners.

  20. AGING SYSTEM DESIGN DEVELOPMENT STRATEGY

    SciTech Connect (OSTI)

    J. Beesley

    2005-02-07

    This plan provides an overview, work to date, and the path forward for the design development strategy of the Aging cask for aging commercial spent nuclear fuel (CSNF) at the Yucca Mountain Project (YMP) repository site. Waste for subsurface emplacement at the repository includes US Department of Energy (DOE) high-level radioactive waste (HLW), DOE SNF, commercial fuel in dual-purpose canisters (DPCs), uncanistered bare fuel, naval fuel, and other waste types. Table 1-1 lists the types of radioactive materials that may be aged at YMP, and those materials that will not be placed in an aging cask or module. This plan presents the strategy for design development of the Aging system. The Aging system will not handle naval fuel, DOE HLW, MCOs, or DOE SNF since those materials will be delivered to the repository in a state and sequence that allows them to be placed into waste packages for emplacement. Some CSNF from nuclear reactors, especially CSNF that is thermally too hot for emplacement underground, will need to be aged at the repository.

  1. Urenco centrifuge and laser development

    SciTech Connect (OSTI)

    Upson, P.C.

    1994-12-31

    The Urenco centrifuge process for the enrichment of uranium is now well developed and economically proven. The centrifuge technology that forms the basis of Urenco`s plants in the United Kingdom, the Netherlands, and Germany has evolved steadily over the last two decades since the Urenco partnership was formed, and current programs of development will see this progress continue into the next century. From the early pilot plant work, the first generation of machines was installed and commissioned in the late 1970s in the U.K. and Netherlands plants. These have both significantly exceeded the original design expectation with respect to both stress lifetime and corrosion resistance. The early U.K. plant was shut down in 1992, again well beyond the expected 10-yr lifetime, while the Netherlands plant is still operating. Since then, significant advances have been made, and a fourth-generation machine began operation in the plants in 1991; in fact, Urenco has all four generations still in operation in its plants today. Urenco`s research on laser isotope separation is also described.

  2. Ripeness sensor development. Final report

    SciTech Connect (OSTI)

    Not Available

    1992-11-01

    About 20--25% of the total production of fruits and vegetables in the USA must be discarded after harvest About 25--30% of this loss is the result of over-ripening and this loss represents about 8.39 {times} 10{sup 12} BTU of invested energy every year. This invested energy could be saved by non-destructive ripeness sensing. Sweetness is an important indicator of fruit quality and highly correlated with ripeness in most fruits. Research to develop a non-destructive fruit ripeness sensor has been conducted in the Agricultural Engineering Department at Purdue University. It is based on {sup 1}H-MR (proton Magnetic Resonance). A first generation prototype of the ripeness sensor based on {sup 1}H-MR was built and tested with. Results show that the sensor can discriminate small fruit (0.75 in diameter or smaller) differing in sugar content by 6%. This prototype can separate the fruit into at least two groups: one ripe and the other not ripe. The estimated cost for such a ripeness sensor is around $4,000. The signal sensitivity of the prototype can be improved to enable it to differentiate between fruits varying in sugar content by only 1 or 2% by using water peak suppression techniques to recover relatively weak sugar resonance signals in intact fruits, modifying circuits to eliminate noise, leakage and distortion of input/output signals, improving the magnetic console to get a higher magnetic field and better homogeneity, and designing a probe to achieve a higher signal-to-noise (S/N) ratio. As research continues a second generation ripeness sensor will be developed which will incorporate many of the improvements and which will be suitable for commercial use. Additional research will allow application of the technique to a wider range of fruit sizes (from blueberries to watermelons). This report describes estimated energy savings, feasibility studies, development of the initial prototype, and preliminary evaluation of the first generation prototype.

  3. Expanding the Trilinos developer community. (Technical Report...

    Office of Scientific and Technical Information (OSTI)

    Trilinos as developers. To-date we have worked with external developers in an ad hoc fashion. Going forward, we want to develop a set of policies, procedures, tools and...

  4. Developer - Q & A | OpenEI Community

    Open Energy Info (EERE)

    Developer header Developer - Q & A Home > Developer Content Group Activity By term Q & A Feeds Question Post date Answers How to access older versions of rates? 7 Sep 2015 - 16:22...

  5. Development of alkaline fuel cells.

    SciTech Connect (OSTI)

    Hibbs, Michael R.; Jenkins, Janelle E.; Alam, Todd Michael; Janarthanan, Rajeswari; Horan, James L.; Caire, Benjamin R.; Ziegler, Zachary C.; Herring, Andrew M.; Yang, Yuan; Zuo, Xiaobing; Robson, Michael H.; Artyushkova, Kateryna; Patterson, Wendy; Atanassov, Plamen Borissov

    2013-09-01

    This project focuses on the development and demonstration of anion exchange membrane (AEM) fuel cells for portable power applications. Novel polymeric anion exchange membranes and ionomers with high chemical stabilities were prepared characterized by researchers at Sandia National Laboratories. Durable, non-precious metal catalysts were prepared by Dr. Plamen Atanassov's research group at the University of New Mexico by utilizing an aerosol-based process to prepare templated nano-structures. Dr. Andy Herring's group at the Colorado School of Mines combined all of these materials to fabricate and test membrane electrode assemblies for single cell testing in a methanol-fueled alkaline system. The highest power density achieved in this study was 54 mW/cm2 which was 90% of the project target and the highest reported power density for a direct methanol alkaline fuel cell.

  6. Research and development joint ventures

    SciTech Connect (OSTI)

    Not Available

    1984-01-01

    Three panels made up of members of Congress and representatives of research and high technology industries testified at a hearing held to consider H.R. 1952 and H.R. 3393, both bills dealing with joint venture policies that diminish US competitiveness. The bills are designed to eliminate disincentives stemming from antitrust concerns about joint research and development (R and D) activities and to encourage private investment in R and D. The witnesses were asked to evaluate and compare the potential of these bills to overcome institutional barriers and to stimulate capital formation. Three appendices with statements from the National Association of Manufacturers, the Semiconductor Industry Association, and the Institute of Electrical and Electronics Engineers submitted for the record follow the testimony of the eight witnesses. (DCK)

  7. Trends in gas turbine development

    SciTech Connect (OSTI)

    Day, W.H.

    1999-07-01

    This paper represents the Gas Turbine Association's view of the gas turbine industry's R and D needs following the Advanced Turbine Systems (ATS) Program which is funded by the U.S. Department of Energy (DOE). Some of this information was discussed at the workshop Next Generation Gas Turbine Power Systems, which was held in Austin, TX, February 9--10, 1999, sponsored by DOE-Federal Energy Technology Center (FETC), reference 1. The general idea is to establish public-private partnerships to reduce the risks involved in the development of new technologies which results in public benefits. The recommendations in this paper are focused on gas turbines > 30 MW output. Specific GTA recommendations on smaller systems are not addressed here. They will be addressed in conjunction with DOE-Energy Efficiency.

  8. Development of BWR plant analyzer

    SciTech Connect (OSTI)

    Wulff, W.; Cheng, H.S.; Lekach, S.V.; Stritar, A.; Mallen, A.N.

    1984-01-01

    The BWR Plant Analyzer has been developed for realistic and accurate simulations of normal and severe abnormal transients in BWR power plants at high simulation speeds, low capital and operating costs and with outstanding user conveniences. The simulation encompasses neutron kinetics, heat conduction in fuel structures, nonequilibrium, nonhomogeneous coolant dynamics, steam line acoustics, and the dynamics of turbines, condensers, feedwater pumps and heaters, of the suppression pool, the control systems and the plant protection systems. These objectives have been achieved. Advanced modeling, using extensively analytical integration and dynamic evaluation of analytical solutions, has been combined with modern minicomputer technology for high-speed simulation of complex systems. The High-Speed Interactive Plant Analyzer code HIPA-BWR has been implemented on the AD10 peripheral parallel processor.

  9. The Basis Code Development System

    Energy Science and Technology Software Center (OSTI)

    1994-03-15

    BASIS9.4 is a system for developing interactive computer programs in Fortran, with some support for C and C++ as well. Using BASIS9.4 you can create a program that has a sophisticated programming language as its user interface so that the user can set, calculate with, and plot, all the major variables in the program. The program author writes only the scientific part of the program; BASIS9.4 supplies an environment in which to exercise that scientificmore » programming which includes an interactive language, an interpreter, graphics, terminal logs, error recovery, macros, saving and retrieving variables, formatted I/O, and online documentation.« less

  10. Recent development in green buildings

    SciTech Connect (OSTI)

    Mei, V.C.

    1996-12-31

    Because of the environmental concerns about some materials used in buildings, particularly chlorofluorocarbon (CFC) fluids used as the blowing agent for insulation materials and as refrigerants used in the air conditioning systems have led to a search for environmentally safe alternatives. For insulation materials, new non-CFC blowing agents are still under development. However, the old insulation materials in the buildings will stay because they do not pose any further environmental damage. It is a different story for refrigerants used in air conditioning systems. This study reports that the change-over from CFC to non-CFC refrigerants in the existing and future air conditioning equipment could be a chance not only to take care of the environmental concerns, but to save energy as well. Alternative air conditioning technologies, such as the desiccant dehumidification and absorption systems, and the potential of some natural substances, such as carbon dioxide, as the future refrigerants are also discussed.

  11. Hanford Site sustainable development initiatives

    SciTech Connect (OSTI)

    Sullivan, C.T.

    1994-05-01

    Since the days of the Manhattan Project of World War II, the economic well being of the Tri-Cities (Pasco, Kennewick, and Richland) of Washington State has been tied to the US Department of Energy missions at the nearby Hanford Site. As missions at the Site changed, so did the economic vitality of the region. The Hanford Site is now poised to complete its final mission, that of environmental restoration. When restoration is completed, the Site may be closed and the effect on the local economy will be devastating if action is not taken now. To that end, economic diversification and transition are being planned. To facilitate the process, the Hanford Site will become a sustainable development demonstration project.

  12. NREL: Technology Deployment - Project Development Model

    Broader source: All U.S. Department of Energy (DOE) Office Webpages (Extended Search)

    Project Development Model NREL developed the Project Development Model to evaluate the risks and investment decisions required for successful renewable energy project development. The two-phase iterative model includes elements in project fundamentals and project development based off commercial project development practices supported by tools such as pro formas and checklists. Project Fundamentals or BEPTC(tm) State & Local Energy Data Enter a city and state or zip code in the State and

  13. Recovery Act Workforce Development | Department of Energy

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Act Workforce Development Recovery Act Workforce Development Map of Smart Grid Workforce Development Map of Smart Grid Workforce Development 19 Awards Read more Map of Workforce Development Programs for the Electric Power Sector Map of Workforce Development Programs for the Electric Power Sector 33 Awards Read more View the full list of selected projects U.S. Secretary of Energy Steven Chu announced that the Department of Energy announced award selections for nearly $100 million for 54 smart

  14. Technical developments of OTEC Systems

    SciTech Connect (OSTI)

    Trenka, A.R.; Thomas, A.; Vega, L.

    1988-01-01

    The US Department of Energy's (DOE) Ocean Energy Technology Program seeks to develop the technology of converting the ocean's vast energy resource into usable forms to the point where industry can assess its potential, commercial utility. The current focus in the program is on the utilization of open-cycle OTEC to produce electricity. The open-cycle OTEC process is one of the few alternative energy options which provides the potential for baseload-carrying capability. This paper provides a very brief overview of the program activities and focuses on results recently obtained from the program's experimental facility designed to allow testing of OC-OTEC subsystems under actual operating conditions utilizing seawater. The facility, referred to as the Seacoast Test Facility (STF), is currently composed of a Heat and Mass Transfer Scoping Test Apparatus (HMTSTA) being supplied by up to 1600 gallons per minute of warm seawater and 1000 gallons per minute of cold seawater. Researchers have obtained experimental data on the performance of evaporators and surface condensers. Also, information on mist elimination and deaeration processes have been obtained. Plans call for modification to the HMTSTA to accommodate the addition of direct-contact condensers. Summary results will be discussed addressing recent studies, by Argonne National Laboratory (ANL), of corrosion and biofouling of aluminum alloy surface condensers. Also discussed is the production of desalinated seawater using an open-cycle OTEC process. Finally to be discussed will be recent developments in OTEC turbines and an assessment of seawater supply systems required for OTEC. A brief overview of the program's future plans also will be presented. 4 refs., 11 figs., 2 tabs.

  15. New developments in hardfacing alloys

    SciTech Connect (OSTI)

    Menon, R.

    1996-02-01

    The hardfacing industry has matured substantially since its inception in the early 1920s. Numerous welding alloys have been developed and field proven. By developing a strong working knowledge of available alloys, wear conditions and the specific wear situation, the goal of selecting the proper alloy to prolong service life and fight wear is now more attainable than ever. Hardfacing is the process in which a coating or cladding is applied to a substrate for the main purpose of reducing wear or loss of material by abrasion, impact, erosion, galling and cavitation. Most service environments involve a combination of these factors. The choice of an alloy system depends to a great degree on the nature of the wear process encountered. This can range from a simple low-stress condition to a very complex situation that involves abrasion combined with a corrodant and high temperature. The list of possible wear conditions is outlined below: (1) low-stress abrasion, (2) high-stress abrasion, (3) impact, (4) metal-to-metal wear, (5) erosion, and (6) cavitation erosion. In general, service conditions involve a combination of several of the conditions listed above. In addition to the type of wear, three other factors are also important as far as the severity of the wear condition is concerned. These are: (1) type of abradant, (2) service temperature, and (3) service environment. It is clear that in terms of the nature of the wear process as well as the environmental conditions, service conditions are extremely complex. They are, therefore, difficult to simulate in the laboratory. The selection of hardfacing alloys for an application is based primarily on actual field experiences and these are refined with data gathered with time.

  16. Steinbine Development LLC | Open Energy Information

    Open Energy Info (EERE)

    Wisconsin Sector: Hydro Product: US-based company that develops and manages small hydroelectric plants. References: Steinbine Development LLC1 This article is a stub. You can...

  17. Potential Hydroelectric Development at Existing Federal Facilities...

    Open Energy Info (EERE)

    Potential Hydroelectric Development at Existing Federal Facilities Jump to: navigation, search OpenEI Reference LibraryAdd to library Report: Potential Hydroelectric Development at...

  18. Lushui County Quande Hydroelectrical Power Development Ltd |...

    Open Energy Info (EERE)

    County Quande Hydroelectrical Power Development Ltd Jump to: navigation, search Name: Lushui County Quande Hydroelectrical Power Development Ltd. Place: Yunnan Province, China...

  19. Baylor University - Renewable Aviation Fuels Development Center...

    Open Energy Info (EERE)

    University - Renewable Aviation Fuels Development Center Jump to: navigation, search Name: Baylor University - Renewable Aviation Fuels Development Center Address: One Bear Place...

  20. Recent Device Developments with Advanced Bulk Thermoelectric...

    Office of Energy Efficiency and Renewable Energy (EERE) Indexed Site

    Device Developments with Advanced Bulk Thermoelectric Materials at RTI Recent Device Developments with Advanced Bulk Thermoelectric Materials at RTI Reviews work in engineered ...