GEOTHERMAL TECHNOLOGIES LEGACY COLLECTION - Bibliographic Citation


Bibliographic Citation



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Title: Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010
Creator/Author: Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany] ; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute] ; Chertkov, Olga [Los Alamos National Laboratory (LANL)] ; Copeland, A [U.S. Department of Energy, Joint Genome Institute] ; Glavina Del Rio, Tijana [U.S. Department of Energy, Joint Genome Institute] ; Nolan, Matt [U.S. Department of Energy, Joint Genome Institute] ; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute] ; Chen, Feng [U.S. Department of Energy, Joint Genome Institute] ; Tice, Hope [U.S. Department of Energy, Joint Genome Institute] ; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute] ; Han, Cliff [Los Alamos National Laboratory (LANL)] ; Bruce, David [Los Alamos National Laboratory (LANL)] ; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL)] ; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute] ; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute] ; Ivanova, N [U.S. Department of Energy, Joint Genome Institute] ; Mavromatis, K [U.S. Department of Energy, Joint Genome Institute] ; Daum, Chris [U.S. Department of Energy, Joint Genome Institute] ; Chen, Amy [U.S. Department of Energy, Joint Genome Institute] ; Palaniappan, Krishna [U.S. Department of Energy, Joint Genome Institute] ; Chang, Yun-Juan [ORNL] ; Land, Miriam L [ORNL] ; Hauser, Loren John [ORNL] ; Jeffries, Cynthia [Oak Ridge National Laboratory (ORNL)] ; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute] ; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany] ; Abt, Birte [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany] ; Pukall, Rudiger [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany] ; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany] ; Bristow, James [U.S. Department of Energy, Joint Genome Institute] ; Markowitz, Victor [U.S. Department of Energy, Joint Genome Institute] ; Hugenholtz, Philip [U.S. Department of Energy, Joint Genome Institute] ; Eisen, Jonathan [U.S. Department of Energy, Joint Genome Institute]
Publication Date:2011 Jan 01
OSTI Identifier:OSTI 1049895
Report Number(s):None
DOE Contract Number:DE-AC05-00OR22725
Document Type:Journal Article
Specific Type:
Coverage:
Resource Relation:Journal Name: Standards in Genomic Sciences; Journal Volume: 5; Journal Issue: 1
Other Number(s):
Research Org:Oak Ridge National Laboratory (ORNL)
Sponsoring Org:ORNL work for others
Subject:15 GEOTHERMAL ENERGY; BACILLUS; BACTERIA; CULTIVATION; GENES; RNA; SOLFATARAS; SPORES; STRAINS
Keywords:hydrogen-oxidizing; aerobe; facultative chemolithoautotroph; thermoacidophile; free-living; solfatara; spore-forming; Bacillaceae; GEBA
Description/Abstract:Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S se- quence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2T as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analy- sis-hampering cultivation conditions and poor growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2T (= DSM 2912 = NBRC 15312) and propose its reclassi- fication as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Publisher:
Country of Publication:US
Language:English
Size/Format:Medium: X; Size: 121-134
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Availability:
System Entry Date:2012 Dec 05
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