GEOTHERMAL TECHNOLOGIES LEGACY COLLECTION - Bibliographic Citation


Bibliographic Citation



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Title: Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
Creator/Author: Mead, David [University of Wisconsin, Madison] ; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute] ; Copeland, A [U.S. Department of Energy, Joint Genome Institute] ; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute] ; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute] ; Bruce, David [Los Alamos National Laboratory (LANL)] ; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL)] ; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute] ; Chertkov, Olga [Los Alamos National Laboratory (LANL)] ; Zhang, Xiaojing [Los Alamos National Laboratory (LANL)] ; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute] ; Han, Cliff [Los Alamos National Laboratory (LANL)] ; Tapia, Roxanne [Los Alamos National Laboratory (LANL)] ; Land, Miriam L [ORNL] ; Hauser, Loren John [ORNL] ; Chang, Yun-Juan [ORNL] ; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute] ; Ivanova, N [U.S. Department of Energy, Joint Genome Institute] ; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute] ; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute] ; Brumm, Catherine [United States Department of Energy Joint Genome Institute] ; Hochstein, Rebecca [Lucigen Corporation, Middleton, Wisconsin] ; Schoenfeld, Thomas [Lucigen Corporation, Middleton, Wisconsin] ; Brumm, Phillip [University of Wisconsin, Madison]
Publication Date:2012 Jan 01
OSTI Identifier:OSTI 1049847
Report Number(s):None
DOE Contract Number:DE-AC05-00OR22725
Document Type:Journal Article
Specific Type:
Coverage:
Resource Relation:Journal Name: Standards in Genomic Sciences; Journal Volume: 6; Journal Issue: 3
Other Number(s):
Research Org:Oak Ridge National Laboratory (ORNL)
Sponsoring Org:ORNL work for others
Subject:15 GEOTHERMAL ENERGY; ANTIBIOTICS; CHROMOSOMES; DNA; GENES; HOT SPRINGS; NITROGEN FIXATION; PRODUCTION; PROTEINS; STRAINS
Keywords:Geobacillus sp. Y412MC10; Paenibacillus sp. Y412MC10; Obsidian Hot Spring
Description/Abstract:Paenibacillus speciesY412MC10 was one of a number of organisms initially isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA. The isolate Y412MC10 was initially classified as a Geobacillus sp. based on its isolation conditions and similarity to other organisms isolated from hot springs at Yellowstone National Park. Comparison of 16 S rRNA sequences within the Bacillales indicated that Geobacillus sp.Y412MC10 clustered with Paenibacillus species and not Geobacillus; the 16S rRNA analysis indicated the organism was a strain of Paenibacillus lautus. Lucigen Corp. prepared genomic DNA and the genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute. The genome of Paenibacillus lautus strain Y412MC10 consists of one circular chromosome of 7,121,665 bp with an average G+C content of 51.2%. The Paenibacillus sp.Y412MC10 genome sequence was deposited at the NCBI in October 2009 (NC{_}013406). Comparison to other Paenibacillus species shows the organism lacks nitrogen fixation, antibiotic production and social interaction genes reported in other Paenibacilli. Over 25% of the proteins predicted by the Y412MC10 genome share no identity with the closest sequenced Paenibacillus species; most of these are predicted hypothetical proteins and their specific function in the environment is unknown.
Publisher:
Country of Publication:US
Language:English
Size/Format:Medium: X; Size: 366-385
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Availability:
System Entry Date:2012 Dec 05
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