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PACKAGE ID	002712WKSTN00 PHYTOZONE V.7.0
KWIC Title	Phytozome System for Comparative Plant Genomics
AUTHORS	D. M. Goodstein, R. D. Hayes, S. Shu, Ul Hellsten, J. B. Fazo, D. S. Rokhsar, R. Howson, W. Dirks, R. Neupane
LIMITATION/AUDIENCE CODE	COPY/UNL
COMPLETION DATE	09/27/2011
PUBLICATION DATE	09/27/2011
DESCRIPTION	Phytozome is a joint project of the Department of Energy's Joint Genome Institute and the UC Berkeley Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. Families of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release 7.0, Phytozome provides access to twenty-five sequenced and annotated green plant genomes which have been clustered into gene families at eleven evolutionarily significant nodes., Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are lyper-linked and searchable.
PACKAGE CONTENTS	Media Directory; Software Abstract; Media includes Source Code;
SOURCE CODE INCLUDED?	Y
MEDIA QUANTITY	1
COMPUTER	WORKSTATION
OPERATING SYSTEMS	Unix/Linux system
PROGRAMMING LANGUAGES	Java, Perl, Python, Groovy, php, mySQL, shell script
ABSTRACT STATUS	Released As-Is 12/13/2011
SPONSOR	USDOE
RESEARCH ORG	Lawrence Livermore National Laboratory
PACKAGE TYPE	AS-IS

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