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PACKAGE ID002712WKSTN00PHYTOZONE V.7.0
KWIC TitlePhytozome System for Comparative Plant Genomics 
AUTHORSD. M. Goodstein, R. D. Hayes, S. Shu, Ul Hellsten, J. B. Fazo, D. S. Rokhsar, R. Howson, W. Dirks, R. Neupane
LIMITATION/AUDIENCE CODECOPY/UNL
COMPLETION DATE 09/27/2011 
PUBLICATION DATE09/27/2011 
DESCRIPTIONPhytozome is a joint project of the Department of Energy's Joint Genome Institute and the UC Berkeley Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. Families of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release 7.0, Phytozome provides access to twenty-five sequenced and annotated green plant genomes which have been clustered into gene families at eleven evolutionarily significant nodes., Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are lyper-linked and searchable. 
PACKAGE CONTENTSMedia Directory; Software Abstract; Media includes Source Code; 
SOURCE CODE INCLUDED?
MEDIA QUANTITY
COMPUTERWORKSTATION 
OPERATING SYSTEMSUnix/Linux system 
PROGRAMMING LANGUAGESJava, Perl, Python, Groovy, php, mySQL, shell script 
ABSTRACT STATUSReleased As-Is 12/13/2011 
SPONSORUSDOE 
RESEARCH ORGLawrence Livermore National Laboratory 
PACKAGE TYPEAS-IS 

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