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PACKAGE ID002279MLTPL00 BEPRO3
KWIC TitleBayesian Estimator of Protein-Protein Association Probabilities 
AUTHORSA.M. White, J.L. Sharp, J.M. Gilmore, D.L. Auberry, K.K. Anderson and D.S. Daly
LIMITATION/AUDIENCE CODEUNL/UNL
COMPLETION DATE05/28/2008 
PUBLICATION DATE05/28/2008 
DESCRIPTIONThe Bayesian Estimator of Protein-Protein Association Probabilities (BEPro3) is a software tool for estimating probabilities of protein-protein association between bait and prey protein pairs using data from multiple-bait, multiple-replicate, protein LC-MS/MS affinity isolation experiments. BEPro3 is public domain software, has been tested on Windows XP and version 10.4 or newer of the Mac OS 10.4, and is freely available. A user guide, example dataset with analysis and additional documentation are included with the BEPro3 download. 
PACKAGE CONTENTSUnlimited software package available from Pacific Northwest National Laboratory at the following URL: http://www.pnl.gov/statistics/BEPro3 
SOURCE CODE INCLUDED?
MEDIA QUANTITY
COMPUTERMLT-PLTFM 
OPERATING SYSTEMSWindows, Mac OSX, Linux 
PROGRAMMING LANGUAGESR, JAVA 
REFERENCESSharp, J.L., Anderson, K.K., Hurst, G.B., Daly, D.S., Pelletier, D.A., Cannon, W.R., Auberry, D.L., Schmoyer, D.D., McDonald, W.H., White, A.M., Hooker, B.S., Victry, K.D., Buchanan, M.V., Kery, V. and Wiley, H.S. 2007. "Statistically Inferring Protein-Protein Associations with Affinity Isolation LC-MS/MS Assays." Journal of Proteome Research, Vol 6, no. 9, pages 3788-3795. Gilmore JM, DL Auberry, AM White, JL Sharp, KK Anderson and DS Daly. 2008. "A Bayesian estimator of protein-protein association probabilities." APPLICATIONS NOTE. BIOINFORMATICS. doi:10.1093 
ABSTRACT STATUSReleased As-Is 7/7/2008 
SPONSORUSDOE - Office of Env., Safety and Health (EH); USDOE - Office of Science (SC) 
RESEARCH ORGPacific Northwest National Laboratory 
PACKAGE TYPEAS-IS 

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