Reich, David - Department of Genetics, Harvard University

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Reich, David - Department of Genetics, Harvard University

Analysis of Chimpanzee History Based on Genome Sequence Alignments
Sensitive Detection of Chromosomal Segments of Distinct Ancestry in Admixed Populations
28 JANUARY 2011 VOL 331 SCIENCE www.sciencemag.org392 New genomic data are settling an old
A High-Density Admixture Scan in 1,670 African Americans with Hypertension
1/5/11 1:38 PMDenisovans Were Neanderthals' Cousins, DNA Analysis Reveals -NYTimes.com Page 1 of 4http://www.nytimes.com/2010/12/23/science/23ancestor.html?_r=2
Admixture Mapping Scans Identify a Locus Affecting Retinal Vascular Caliber in Hypertensive African
ORIGINAL CONTRIBUTION Modification of Multiple Sclerosis Phenotypes
MYH9 is associated with nondiabetic end-stage renal disease in African Americans
A Draft Sequence of the Neandertal Genome
The difficulty of avoiding false positives in genome scans for natural selection
2002 NaturePublishing Group preferences is potentially a general phenomenon in the Lepidoptera.
Empirical distribution Theoretical2distribution
7 MAY 2010 VOL 328 SCIENCE www.sciencemag.org680 IT'S THE MYSTERY OF MOUNT CARMEL. ON
Long-Range LD Can Confound Genome Scans
7/6/09 2:18 PMOur Hidden History -New York Times Page 1 of 1http://query.nytimes.com/gst/fullpage.html?res=990CE2DF103EF931A15756C0A9609C8B63&sec=&spon=&pagewanted=print
www.sciencemag.org/cgi/content/full/328/5979/710/DC1 Supporting Online Material for
Copyright 2005 by the Genetics Society of America DOI: 10.1534/genetics.103.015768
Am. J. Hum. Genet. 74:11111120, 2004 Genetic Signatures of Strong Recent Positive Selection at the Lactase Gene
SUPPLEMENTARY MATERIAL Selection and genotyping of unlinked genetic markers
Forthelatestresearchpublishedby Naturevisit
A Neanderthal Chronicle Ancient DNA Shared by Modern Humans Outside Africa
Mol. Biol. Evol. 16(4):453466. 1999 1999 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
Reduced Neutrophil Count in People of African Descent Is Due To a Regulatory Variant in the Duffy Antigen
Will admixture mapping work to find disease genes?
Admixture Mapping of 15,280 African Americans Identifies Obesity Susceptibility Loci on Chromosomes 5
This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research
Multiple regions within 8q24 independently affect risk for prostate cancer
Am. J. Hum. Genet. 64:10711075, 1999 Age Estimates of Two Common Mutations Causing Factor XI Deficiency
he notion that chronic inflammation causes cancer is well documented, but exactly how the disease unfolds is not always clear. New work from HSPH digs into the devilish details that
Complex speciation of humans and chimpanzees Arising from: N. Patterson, D. J. Richter, S. Gnerre, E. Lander & D. Reich Nature 441, 11031108 (2006)
Supplementary Information Genetic History of an Archaic Hominin group from
An Admixture Scan in 1,484 African American Women with Breast Cancer
Admixture Mapping of White Cell Count: Genetic Locus Responsible for Lower White Blood Cell
SUPPLEMENTARY INFORMATION 1www.nature.com/nature
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Enhanced Statistical Tests for GWAS in Admixed Populations: Assessment using African Americans from
Hum Genet (2009) 126:637642 DOI 10.1007/s00439-009-0712-z
7/2/09 3:02 PMHuman-Chimp Hybrids -New York Times Page 1 of 3http://www.nytimes.com/2006/12/10/magazine/10Section2a.t-5.html?_r=1
Am. J. Hum. Genet. 74:000000, 2004 Methods for High-Density Admixture Mapping of Disease Genes
Am. J. Hum. Genet. 74:160167, 2004 Mapping Multiple Sclerosis Susceptibility to the HLA-DR Locus in African
Discerning the Ancestry of European Americans in Genetic Association Studies
Population differentiation as a test for selective Hua Chen,1,2,3
1/13/11 12:12 PMProstate cancer risk tied to DNA changes; Discovery may spur research Page 1 of 3https://secure.pqarchiver.com/boston/access/1248324341.html?FMT=F...e+cancer+risk+tied+to+DNA+changes%3B+Discovery+may+spur+research
Microsatellites Are Molecular Clocks That Support Accurate Inferences about James X. Sun,* k James C. Mullikin, Nick Patterson,* and David E. Reich*
The role of the CD58 locus in multiple sclerosis Philip L. De Jagera,b,c,1
www.ajhg.org The American Journal of Human Genetics Volume 81 August 2007 000 Combining Evidence of Natural Selection with Association
ANCESTRYMAP SOFTWARE DOCUMENTATION What's New in Version 2.0 3
nature genetics volume 24 april 2000 381 Large-scale discovery and genotyping of
Supplementary Note 1 Correlation of 8q24 to four subphenotypes
A common genetic risk factor for colorectal and prostate cancer
Genomic DNA Sequences from Mastodon and Woolly Mammoth Reveal Deep Speciation of Forest and
Population Structure and Eigenanalysis Nick Patterson1*
See a sample reprint in PDF format. Order a reprint of this article now ENVIRONMENT & SCIENCE MAY 6, 2010
Reconstructing Indian population history David Reich1,2
Supplementary Methods: Smoothed genetic map positions: To obtain genetic positions for the SNPs in this study,
Genetic Epidemiology 35 : 8083 (2011) Ancestry Informative Marker Panels for African Americans Based
Genome-wide association (GWA) studies have identified hundreds of common vari-
Genetic structure of a unique admixed population: implications for medical research
Complete Khoisan and Bantu genomes from southern Stephan C. Schuster1
Supplementary material for: Population Differentiation as a Test for Selective Sweeps
Can a Sex-Biased Human Demography Account for the Reduced Effective Population Size of Chromosome X in
TECHNICAL ADVANCES A rapid column-based ancient DNA extraction method for
SUPPLEMENTARY INFORMATION 1www.nature.com/nature
Table of Contents 1 Table S1 -Autosomal FST among 25 Indian groups (no inbreeding correction) 2
Strong association of socioeconomic status with genetic ancestry in Latinos: implications for admixture studies
The Impact of Divergence Time on the Nature of Population Structure: An Example from Iceland
Supporting Information De Jager et al. 10.1073/pnas.0813310106
A common MYBPC3 (cardiac myosin binding protein C) variant associated with cardiomyopathies in South Asia
!"#$%#&#$' )* #+ Supplementary Information NATURE GENETICS,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Genetic Differences between the Determinants of Lipid Profile Phenotypes in African and European Americans
OBESITY | VOLUME 18 NUMBER 3 | MARCH 2010 563 nature publishing group ARTICLES
Functional Enhancers at the Gene-Poor 8q24 Cancer-Linked Locus
Effects of cis and trans Genetic Ancestry on Gene Expression in African Americans
Supplementary Figure 1. Principal components analysis of European ancestry in the African American, Native Hawaiian and
DOI: 10.1126/science.1137568 , 370b (2007);316Science
Genetic Structure of Chimpanzee Populations Celine Becquet1
www.ajhg.org The American Journal of Human Genetics Volume 80 June 2007 000 A Genomewide Admixture Map for Latino Populations
716 The American Journal of Human Genetics Volume 80 April 2007 www.ajhg.org Admixture Mapping of an Allele Affecting Interleukin 6 Soluble
DOI 10.1007/s00439-007-0353-z ORIGINAL INVESTIGATION
ORIGINAL ARTICLE Genetic markers for ancestry are correlated with body
Admixture mapping identifies 8q24 as a prostate cancer risk locus in African-American men
2006 Nature Publishing Group Genetic evidence for complex speciation
130 The American Journal of Human Genetics Volume 78 January 2006 www.ajhg.org Variants Associated with Common Disease Are Not Unusually
Initial sequence of the chimpanzee genome and comparison with the human
The Case for Selection at CCR5-D32 Pardis C. Sabeti1,2*
Calibrating a coalescent simulation of human genome sequence variation
Clinical characteristics of African Americans vs Caucasian Americans
nature genetics volume 32 september 2002 135 Human genome sequence variation and
Am. J. Hum. Genet. 62:15071515, 1998 Dating the Origin of the CCR5-D32 AIDS-Resistance Allele by the
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7/2/09 3:02 PMTwo Splits Between Human and Chimp Lines Suggested -New York Times Page 1 of 2http://query.nytimes.com/gst/fullpage.html?res=9B0CE7DC123EF93BA25756C0A9609C8B63&sec=health&spon=%5D&pagewanted=print
7/7/09 9:23 AMNick Patterson: A Cold War Cryptologist Takes a Crack at Deciphering DNA's Deep Secrets -New York Times Page 1 of 4http://www.nytimes.com/2006/12/12/science/12prof.html?pagewanted=print
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 81198123, July 1998
Principal components analysis corrects for stratification in genome-wide association studies
Am. J. Hum. Genet. 74:000000, 2004 A High-Density Admixture Map for Disease Gene Discovery in African
Table of contents Supplementary notes
7/21/11 1:03 PMResearchers create the world's most advanced genetic map | Focus Page 1 of 4http://www.focushms.com/features/researchers-create-the-world's-most-advanced-genetic-map/
W W W. N A T U R E . C O M / N A T U R E | 1 SUPPLEMENTARYINFORMATION doi:10.1038/nature10231
The American Journal of Human Genetics, Volume 89 Supplemental Data
LETTER doi:10.1038/nature10231 Inference of human population history from
letters to nature NATURE |VOL 411 |10 MAY 2001 |www.nature.com 199
7/21/11 1:00 PMGenetics: Studies map key spots on African American genomes -latimes.com Page 1 of 4http://www.latimes.com/news/science/la-he-african-american-genetics-20110721,0,1101559.story
ARTICLE doi:10.1038/nature10336 The landscape of recombination in
Indian Siddis: African Descendants with Indian Admixture Anish M. Shah,1,9 Rakesh Tamang,1,9 Priya Moorjani,2,3,9 Deepa Selvi Rani,1 Periyasamy Govindaraj,1
Genome-wide Comparison of African-Ancestry Populations from CARe and Other Cohorts
8/16/11 12:26 PMThe New Yorker Digital Edition : Aug 15, 2011 Page 1 of 12http://archives.newyorker.com/#
26 AUGUST 2011 VOL 333 SCIENCE www.sciencemag.org1084 CREDITS(TOPTOBOTTOM):ANNGIBBONS;BENCEVIOLA/MPIEVA;ANNGIBBONS;BENCEVIOLA/MPIEVA
Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania
1/31/12 9:39 AMGains in DNA Are Speeding Research Into Human Origins -NYTimes.com Page 1 of 3http://www.nytimes.com/2012/01/31/science/gains-in-dna-are-speeding-research-into-human-origins.html?_r=2
Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
SUPPLEMENTARY NOTES DNA Fragmentation