
- PLEASE SCROLL DOWN FOR ARTICLE This article was downloaded by
- Nikolaos Ch. Alachiotis Address: The Exelixis Lab
- SAN DIEGO SUPERCOMPUTER CENTER at the UNIVERSITY OF CALIFORNIA, SAN DIEGO
- Future Generation Computer Systems 21 (2005) 725730 DRAxML@home: a distributed program for
- The University of New Mexico How Many Bootstrap
- DNA RAxML,
- Large-scale Maximum Likelihood-based Phylogenetic Analysis on the IBM BlueGene/L
- Use of a Monte-Carlo based probability matrix for 3D iterative reconstruction of MADPETII data
- Using Treemaps to Visualize Phylogenetic Trees ,
- 6 Taxon Sampling versus Computational Complexity
- Inferring Phylogenies with RAxML-VI-HPC Alexandros Stamatakis
- New Fast and Accurate Heuristics for Inference of Large Phylogenetic Trees Alexandros P. Stamatakis, Harald Meier
- Multiple Evolutionary Mechanisms Drive Papillomavirus Diversification Marc Gottschling,* Alexandros Stamatakis, Ingo Nindl,* Eggert Stockfleth,*
- Special purpose processors for performance boosting of Bioinformatics Algorithms Euripides Sotiriades, Grigorios Chrysos, Georgios-Grigorios Mplemenos, Panagiotis Afratis, Nikolaos Alachiotis, Panagiotis
- The RAxML-VI-HPC Version 2.0 Manual Alexandros Stamatakis
- An Efficient Program for Phylogenetic Inference Using Simulated Annealing Alexandros Stamatakis
- Initial Experiences Porting a Bioinformatics Application to a Graphics Processor
- Dynamic Multigrain Parallelization on the Cell Broadband Engine Filip Blagojevic,
- Efficiently Building On-Line Tools for Distributed Heterogeneous Environments
- Scientific Programming 16 (2008) 255270 255 DOI 10.3233/SPR-2008-0247
- Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood
- The RAxML-VI-HPC Manual Alexandros Stamatakis
- RAxML-OMP: An Efficient Program for Phylogenetic Inference on SMPs
- RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine
- LUDWIG-MAXIMILIANS-UNIVERSITT TECHNISCHE UNIVERSITT MNCHEN
- Load Balance in the Phylogenetic Likelihood Kernel Alexandros Stamatakis
- Distributed and Parallel Algorithms and Systems for Inference of Huge
- International Journal of Grid and High Performance Computing, 1(1), 9-, January-March 2009 9 Copyright 2009, IGI Global. Copying or distributing in print or electronic forms without written permission of IGI Global
- Efficient computation of the phylogenetic likelihood function on multi-gene alignments
- Journal of VLSI Signal Processing 48, 271286, 2007 * 2007 Springer Science + Business Media, LLC. Manufactured in The United States.
- Vol. 22 no. 21 2006, pages 26882690 doi:10.1093/bioinformatics/btl446BIOINFORMATICS APPLICATIONS NOTE
- BIOINFORMATICS ORIGINAL PAPER Vol. 21 no. 4 2005, pages 456463
- Accuracy and Performance of Single versus Double Precision Arithmetics for Maximum
- Fine-grain Parallelism using Multi-core, Cell/BE, and GPU Systems: Accelerating the Phylogenetic Likelihood Function
- !"#$%&'()")'*)$&($+,)$-)..)'/*$0&*/)+1$(&"$%&234+5+/&'5.$6/&.&71$5'#$6/&/'(&"25+/*89$!:;!<$=*+&>)" ?
- Exploiting Fine-Grained Parallelism in the Phylogenetic Likelihood Function with MPI,
- Phylogenetic Models of Rate Heterogeneity: A High Performance Computing Perspective
- Phylogenetic Tree Inference on PC Architectures with AxML/PAxML Alexandros P. Stamatakis
- Accelerating Parallel Maximum Likelihood-based Phylogenetic Tree Calculations using Subtree Equality
- AxML: A Fast Program for Sequential and Parallel Phylogenetic Tree Calculations Based on the Maximum Likelihood Method
- Evolutionary Placement of Short Sequence Reads Performance, Accuracy and Web-Server for Evolutionary Placement of
- Running RAxML_VI under Windows (Tested on XP and Vista). RAxML_VI is a command line program. You can run it from the command prompt. The simplest way to do
- EFFICIENT FLOATING-POINT LOGARITHM UNIT FOR FPGAS Nikolaos Alachiotis, Alexandros Stamatakis
- Session: Proceedings of the 4th conference of the Hellenic Society for Computational Biology & Bioinformatics -HSCBB09
- COMPUTING LARGE PHYLOGENIES WITH STATISTICAL METHODS: PROBLEMS & SOLUTIONS
- Assessing the root of bilaterian animals with scalable phylogenomic methods
- Exploring FPGAs for Accelerating the Phylogenetic Likelihood Function N. Alachiotis1,2
- A RECONFIGURABLE ARCHITECTURE FOR THE PHYLOGENETIC LIKELIHOOD FUNCTION
- ARB: a software environment for sequence data Wolfgang Ludwig*
- A RECONFIGURABLE ARCHITECTURE FOR THE PHYLOGENETIC LIKELIHOOD FUNCTION
- Supplentary Material 1. Simulations
- UNIT 19.11Phylogenetic Analysis of Protein Sequence Data Using the Randomized Axelerated
- ChromatoGate 1.2 Manual Nikolaos Alachiotis