- Subnetwork State Functions Define Dysregulated Subnetworks in Cancer
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS PFP: Automated prediction of gene ontology
- BIOINFORMATICS APPLICATIONS NOTE Vol. 25 no. 21 2009, pages 28432844
- Vol. 21 no. 21 2005, pages 40544059 doi:10.1093/bioinformatics/bti660BIOINFORMATICS ORIGINAL PAPER
- JOURNAL OF LATEX CLASS FILES, VOL. 1, NO. 11, NOVEMBER 2002 1 Simultaneous Characterization of Optical and
- Epigenomic mapping in Arabidopsis using tiling microarrays Robert A. Martienssen1
- Available online at www.sciencedirect.com From mutations to MAGIC: resources for gene discovery,
- Rev. 4/20/11 Statistical Consulting Services
- Estimating Differential Reproductive Success from Nests of Related Individuals, with Application to a Study of the Mottled Sculpin, Cottus bairdi.
- tal stage 26. By stage 41, the eyes release mel-atonin rhythmically, indicating that Xenopus em-
- Preliminary Report to the Purdue Writing Lab: Assessing Usability of the "New" Online
- Genetic analysis of genome-wide variation in human gene expression
- 2006 Nature Publishing Group There has never been a better time to analyse molecular
- Vol. 24 no. 9 2008, pages 11751182 BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btn081
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Threading without optimizing weighting
- Sub-AQUA: real-value quality assessment of protein structure models
- Electronic Journal of Statistics Vol. 3 (2009) 781796
- Copyright 2005 by the Genetics Society of America DOI: 10.1534/genetics.104.034967
- doi:10.1101/gr.2395204 2004 14: 1786-1796Genome Res.
- Annu. Rev. Genomics Hum. Genet. 2004. 5:44377 doi: 10.1146/annurev.genom.5.061903.180017
- Vol. 21 no. 24 2005, pages 43844393 doi:10.1093/bioinformatics/bti732BIOINFORMATICS ORIGINAL PAPER
- Quantitative trait loci for hip dysplasia in a crossbreed canine Rory J. Todhunter,1
- Large-Scale Identification of Single-Feature Polymorphisms in Complex Genomes
- Antibody Arrays in Cancer Research Brian B. Haab
- BIOINFORMATICS ORIGINAL PAPER Vol. 25 no. 22 2009, pages 29062912
- Scalable Parallel Algorithms for FPT Problems Faisal N. Abu-Khzam, Michael A. Langston
- Copyright 2007 by the Genetics Society of America DOI: 10.1534/genetics.106.064915
- Purdue Online Writing Lab (OWL) Usability Report
- Purdue Online Writing Lab (OWL) Usability Report Salvo, Brizee, Driscoll, Sousa
- Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing
- 216 Current Protein and Peptide Science, 2009, 10, 216-228 1389-2037/09 $55.00+.00 2009 Bentham Science Publishers Ltd.
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS SHORT COMMUNICATION
- Significance analysis of microarrays applied to the ionizing radiation response
- TOUCHSTONE: A Unified Approach to Protein Structure Jeffrey Skolnick,1* Yang Zhang,1
- Statistical and Computational Methods for Comparative Proteomic Profiling Using Liquid
- AUTOMATED FUNCTION PREDICTION Enhanced automated function prediction using distantly
- STRATEGIC PLAN August 2003
- Statistical Science 1997, Vol. 12, No. 3, 195219
- Analysis and validation of proteomic data generated by tandem mass spectrometry
- Childhood Obesity and Insulin-Resistant Cynthia S. Yensel, MS, RN, CPNP
- Generalized Comparative Modeling (GENECOMP): A Combination of Sequence Comparison, Threading, and
- TOUCHSTONEX: Protein Structure Prediction With Sparse Yang Zhang,1
- Prediction of Membrane Proteins in Post-Genomic Era
- Breast Cancer Awareness Day October 7, 2009
- Updated on November 17, 2010 Daisuke Kihara, Ph.D.
- BIOINFORMATICS ORIGINAL PAPER Vol. 25 no. 14 2009, pages 17391745
- www.sciencemag.org SCIENCE VOL 320 6 JUNE 2008 1289 CREDIT:DIMEO/EPA/CORBIS
- Combining gene sequence similarity and textual information for gene function annotation in the literature
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Characterization of local geometry of protein
- Tracing Lineage in Multi-version Scientific Databases Mingwu Zhang Daisuke Kihara and Sunil Prabhakar
- Salient Critical Points for Meshes Yu-Shen Liu Min Liu Daisuke Kihara Karthik Ramani
- OMICS A Journal of Integrative Biology Volume 11, Number 1, 2007
- Statistical Potential-Based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences
- R E V I E W Bioinformatics resources for cancer research with an emphasis on
- PFP: Protein Function Prediction server For any questions regarding PFP contact the administration at info@kiharalab.org
- Prolactin receptor expression in the epithelia and stroma of the rat mammary gland
- Statistical significance for genomewide studies John D. Storey*
- Letter to the Editor Am. J. Hum. Genet. 68:10651067, 2001
- Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas
- The Authors (2009) New Phytologist (2009) 183: 557564 557 Journal compilation New Phytologist (2009) www.newphytologist.org 557
- Genet. Res., Camb. (2001), 77, pp. 123128. With 2 figures. Printed in the United Kingdom # 2001 Cambridge University Press 123 Statistical design and the analysis of gene expression
- Ionomics and the Study of the Plant Ionome
- Journal of Experimental Botany, Vol. 60, No. 5, pp. 14091425, 2009 Perspectives on Plant Development Special Issue
- Sample Letter November 2, 1998
- 2009 GRADUATE STUDENT RESEARCH AWARDS COMPETITION
- Purdue University Department of Computer Science
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Real-time ligand binding pocket database
- Protein Function Prediction in Proteomics Era Daisuke Kihara, Troy Hawkins, Stan Luban, Bin Li,
- Molecular Surface Representation Using 3D Zernike descriptors for Protein Shape Comparison and Docking
- Local Energy Landscape Flattening: Parallel Hyperbolic Monte Carlo Sampling of Protein Folding
- Protein Engineering vol.11 no.11 pp.961970, 1998 Prediction of membrane proteins based on classification of
- TOUCHSTONE: An ab initio protein structure prediction method that uses threading-
- Local Protein Surface Classification 1 Running Head: LOCAL PROTEIN SURFACE CLASSIFICATION
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Fast protein tertiary structure retrieval
- New paradigm in protein function prediction for large scale omics analysis
- The PDB is a Covering Set of Small Protein Structures Daisuke Kihara and Jeffrey Skolnick*
- Defrosting the Frozen Approximation: PROSPECTOR--A New Approach to Threading
- Ab Initio Protein Structure Prediction via a Combination of Threading, Lattice Folding, Clustering, and Structure
- Potential for Protein Surface Shape Analysis Using Spherical Harmonics and 3D Zernike Descriptors
- BMC Bioinformatics Research article
- BioMed Central Page 1 of 20
- 2006 Nature Publishing Group The goal of population association studies is to identify
- Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.
- ESG: Extended Similarity Group method for protein function prediction For any questions regarding ESG contact the administration at info@kiharalab.org
- The effect of long-range interactions on the secondary structure formation of proteins
- Two-Dimensional Correlation Optimized Warping Algorithm for Aligning GCGC-MS Data
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Estimating quality of template-based protein
- Minimal Parameter Tuning Guideline for Motif Discovery Program Evaluation &
- Association of alcohol dehydrogenase genes with alcohol dependence: a comprehensive analysis
- Journal of Bioinformatics and Computational Biology Vol. 5, No. 1 (2007) 130
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Effect of using suboptimal alignments in
- CRITERIA FOR NOMINATION -2011 The Sigma Xi High School Science/Mathematics Teaching Award is given annually to an
- 2001 Macmillan Magazines techniques include singlemarker mapping interval
- BIOINFORMATICS ORIGINAL PAPER Vol. 21 no. 9 2005, pages 19431949
- Ab initio protein structure prediction on a genomic scale: Application to the Mycoplasma
- Development and Large Scale Benchmark Testing of the PROSPECTOR_3 Threading Algorithm
- Full Dynamic Range Proteome Analysis of S. cerevisiae
- Microbial Genomes Have Over 72% Structure Assignment by the Threading Algorithm PROSPECTOR_Q
- Updated on July25, 2010 Daisuke Kihara, Ph.D.
- Systems Biology and the Emergence of Systems Medicine
- Am. J. Hum. Genet. 67:146154, 2000 A Test for Linkage and Association in General Pedigrees: The Pedigree
- Purdue University Sigma Xi Active Members Adams, George B. ID: 850270281 EXP: 6/30/2010
- Purdue University Chapter Invites you and a guest to the
- Tandem Clusters of Membrane Proteins in Complete Genome Sequences
- Protein-Protein Docking Using Region-Based 3D Zernike Descriptors Vishwesh Venkatraman, Yifeng David Yang, Lee Sael, & Daisuke Kihara
- Computational Protein Function Prediction: Framework and Challenges
- Energetics-Based Discovery of ProteinLigand Interactions on a Proteomic Scale
- 520 Current Protein and Peptide Science, 2011, 12, 520-530 1389-2037/11 $58.00+.00 2011 Bentham Science Publishers Ltd.
- Enhanced Sequence-Based Function Prediction Methods and Application to Functional
- Updated on June 30, 2011 Daisuke Kihara, Ph.D.
- Protein Binding Ligand Prediction Using Moments-Based Methods
- "Be aware of what others are doing, applaud their efforts, acknowledge their
- Identification of a Novel Effector Domain of BIN1 for Cancer Suppression
- DIMENSIONS of DISCOVERY Sponsored Program Awards
- Organizational Primer Purdue University CERIAS 656 Oval Drive
- ABE Agricultural and Biological Engineering F9 ADDL Animal Disease Diagnostic Lab G10
- American Journal of Molecular Biology, 2011, 1, 140-155 doi:10.4236/ajmb.2011.13015 Published Online October 2011 (http://www.SciRP.org/journal/ajmb/
- American Journal of Molecular Biology, 2011, 1, 140-155 doi:10.4236/ajmb.2011.13015 Published Online October 2011 (http://www.SciRP.org/journal/ajmb/
- Updated on January 3, 2012 Daisuke Kihara, Ph.D.
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS A novel method for proteinprotein
- Structure-and sequence-based function prediction for non-homologous proteins
- Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to
- Detecting Local Ligand-Binding Site Similarity in Non-Homologous Proteins by Surface Patch Comparison
