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- DOI: 10.1126/science.1147555 , 792 (2007);318Science
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- 10.1101/gr.4537706Access the most recent version at doi: 2006 16: 1596-1604; originally published online Oct 19, 2006;Genome Res.
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- DOI: 10.1126/science.1158565 , 857b (2008);322Science
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- DOI: 10.1126/science.1139462 , 238 (2007);316Science
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- DOI: 10.1126/science.1139247 , 222 (2007);316Science
- 10.1101/gr.5353806Access the most recent version at doi: 2006 16: 1480-1492; originally published online Oct 12, 2006;Genome Res.
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- DOI: 10.1126/science.1147046 , 33c (2008);319Science
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