
- Control of Genotypic Allelic Inclusion through TCR Surface Aryeh Warmflash,* Martin Weigert,
- A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT
- J.Stat.Mech.(2010)P02006 ournal of Statistical Mechanics
- Proc. Natl. Acad. Sci. USA Vol. 93, pp. 8356-8361, August 1996
- Micelle Formation and the Hydrophobic Effect Lutz Maibaum, Aaron R. Dinner, and David Chandler*,
- Implications of Alternative Substrate Binding Modes for Catalysis by Uracil-DNA Glycosylase: An Apparent Discrepancy Resolved
- Bias annealing: A method for obtaining transition paths de novo Jie Hu, Ao Ma, and Aaron R. Dinnera
- Use of Quantitative Structure-Property Relationships to Predict the Folding Ability of Model Proteins
- The Thermodynamics and Kinetics of Protein Folding: A Lattice Model Analysis of Multiple Pathways with Intermediates
- RESEARCH ARTICLE Open Access Mechanistic insights from a quantitative analysis
- CORRESPONDENCE Angew. Chem. Int. Ed. 2001, 40, No. 24 WILEY-VCH Verlag GmbH, D-69451 Weinheim, 2001 1433-7851/01/4024-4615 $ 17.50+.50/0 4615
- A Model for TCR Gene Segment Use1 Aryeh Warmflash* and Aaron R. Dinner2
- Proc. Natl. Acad. Sci. USA Vol. 96, pp. 90689073, August 1999
- Phase diagram of a model protein derived by exhaustive enumeration of the conformations
- Spreading of colloid clusters in a quasi-one-dimensional channel Xinliang Xu, Binhua Lin, Bianxiao Cui,a
- B Cell Antigen Receptor Signaling and Internalization Are Mutually Exclusive Events
- Using the Bias from Flow to Elucidate Single DNA Repair Protein Sliding and Interactions with DNA
- Model for how retrograde actin flow regulates adhesion traction stresses This article has been downloaded from IOPscience. Please scroll down to see the full text article.
- Atomistic understanding of kinetic pathways for single base-pair binding and unbinding in DNA
- Critical behavior of a model for catalyzed autoamplification Martin Tchernookov, Aryeh Warmflash, and Aaron R. Dinnera
- Multilineage Transcriptional Priming and Determination of Alternate
- Conformational sampling via a self-regulating effective energy surface Ryan Bitetti-Putzer
- Models of Single-Molecule Experiments with Periodic Perturbations Reveal Hidden Dynamics in RNA Folding
- A major goal of developmental biology is to understand the molecular mechanisms whereby genetic signaling networks
- Incorporating friction and collective shear moves into a lattice gas Alex Dickson, Alice Nasto, and Aaron R. Dinner
- Enhanced Sampling of Nonequilibrium Steady States
- Field theoretic treatment of an effective action for a model of catalyzed autoamplification Martin Tchernookov, Aryeh Warmflash, and Aaron R. Dinner
- Separating forward and backward pathways in nonequilibrium umbrella Alex Dickson, Aryeh Warmflash, and Aaron R. Dinnera
- Nonequilibrium umbrella sampling in spaces of many order parameters Alex Dickson, Aryeh Warmflash, and Aaron R. Dinnera
- How Focal Adhesion Size Depends on Integrin Affinity Tong Zhao,,
- Signatures of combinatorial regulation in intrinsic biological noise
- The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism
- How noise statistics impact models of enzyme cycles Aryeh Warmflash, David N. Adamson, and Aaron R. Dinnera
- Umbrella sampling for nonequilibrium processes Aryeh Warmflash, Prabhakar Bhimalapuram, and Aaron R. Dinnera
- Lattice model for self-assembly with application to the formation of cytoskeletal-like structures Shannon F. Stewman and Aaron R. Dinner*
- Effects of nonproductive binding on the kinetics of enzymatic reactions with patterned substrates
- A Hybrid Deterministic-Stochastic Algorithm for Modeling Cell Signaling Dynamics in Spatially Inhomogeneous Environments and under the Influence of External Fields
- Dynamic coupling between coordinates in a model for biomolecular isomerization
- Monte Carlo Simulations of Biomolecules: The MC Module AARON R. DINNER1,2,3,4
- Automatic Method for Identifying Reaction Coordinates in Complex Systems Ao Ma and Aaron R. Dinner*
- Grand canonical Monte Carlo simulations of water in protein environments Hyung-June Wooa)
- A RT I C L E S CD4 enhances T cell sensitivity to antigen by
- The Immunological Synapse Balances T Cell Receptor
- European Biophysics Journal EBSA 2003
- Statistical Analysis of Protein Folding Kinetics Aaron R. Dinner
- short communications nature structural biology volume 8 number 1 january 2001 21
- Local Deformations of Polymers with Nonplanar Rigid Main-Chain
- TIBS 25 JULY 2000 33109680004/00/$ See front matter 2000, Elsevier Science Ltd. All rights reserved. PII: S0968-0004(00)01610-8
- Is Protein Unfolding the Reverse of Protein Folding? A Lattice Simulation Analysis
- Factors That Affect the Folding Ability of Proteins Aaron R. Dinner,1,2 Victor Abkevich,1 Eugene Shakhnovich,1,2 and Martin Karplus1,2,3*
- Immunity, Vol. 10, 761768, June, 1999, Copyright 1999 by Cell Press One of Two Unstructured Domains of Ii Becomes
- Enhancement of Diffusion-Controlled Reaction Rates by Surface-Induced Orientational Restriction
- Abstract. We present a method to treat the solvent ef-ficiently in hybrid quantum mechanical/molecular me-
- How the nature of an observation affects single-trajectory entropies Ying Li, Tong Zhao, Prabhakar Bhimalapuram, and Aaron R. Dinnera
- 14. Coppin, C. M., Pierce, D. W., Hsu, L. & Vale, R. D. The load dependence of kinesin's mechanical cycle. Proc. Natl Acad. Sci. USA 94, 85398544 (1997).
- Self-guided enhanced sampling methods for thermodynamic averages Ioan Andricioaeia)
- Apparent Directional Scanning for DNA Repair Tong Zhao and Aaron R. Dinner
- Published: September 23, 2011 r 2011 American Chemical Society 13065 dx.doi.org/10.1021/jp2076935 |J. Phys. Chem. B 2011, 115, 1306513074
- Published: July 29, 2011 r 2011 American Chemical Society 2710 dx.doi.org/10.1021/ct200371n |J. Chem. Theory Comput. 2011, 7, 27102720
- An incoherent regulatory network architecture that orchestrates B cell diversification in response to
- 300 VOLUME 13 NUMBER 3 MARCH 2012 nature immunology A rt i c l e s
- BIOINFORMATICS ORIGINAL PAPER Vol. 28 no. 2 2012, pages 206213
- Polymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading
- PHYSICAL REVIEW E 84, 031932 (2011) Short-time evolution in the adaptive immune system
- 1212 VOLUME 12 NUMBER 12 DECEMBER 2011 nature immunology B lymphopoiesis is driven by the sequential rearrangement and
- Vaccine 30 (2012) 607613 Contents lists available at SciVerse ScienceDirect
- Published in IET Systems Biology Received on 14th December 2009
- Assembly of vorticity-aligned hard-sphere colloidal strings in a simple shear flow
- PHYSICAL REVIEW E 84, 061134 (2011) Entrainment of a driven oscillator as a dynamical phase transition