
- Bacterial Evolution: Chromosome Arithmetic and Geometry
- Environmental Microbiology (2004) 6(7), 754759 doi:10.1111/j.1462-2920.2004.00617.x 2004 Blackwell Publishing Ltd
- Mol. Biol. Evol. 17(3):416422. 2000 2000 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
- Stepwise formation of the bacterial flagellar system Renyi Liu, and Howard Ochman
- Sequence information from complete genomes, and from multiple loci of strains within species, is transforming the way
- Proc. Natl. Acad. Sci. USA Vol. 93, pp. 78007804, July 1996
- Genes Lost and Genes Found: Evolution of Bacterial Pathogenesis and Symbiosis
- JOURNAL OF BACTERIOLOGY, Jan. 2010, p. 560567 Vol. 192, No. 2 0021-9193/10/$12.00 doi:10.1128/JB.01233-09
- Recognizing the pseudogenes in bacterial genomes Emmanuelle Lerat and Howard Ochman1,
- JOURNAL OF BACTERIOLOGY, Oct. 2007, p. 70987104 Vol. 189, No. 19 0021-9193/07/$08.00 0 doi:10.1128/JB.00643-07
- Comparative Metagenomics and Population Dynamics of the Gut Microbiota in Mother and Infant
- Genomics update Afterword: Genomics Update updateemi_2040 2193
- Copyright 2008 by the Genetics Society of America DOI: 10.1534/genetics.107.085621
- Summary The gene-dense chromosomes of archaea and bacteria were long thought to be devoid of pseudogenes, but
- R E V I E W A R T I C L E The fate of new bacterial genes
- Bacterial Genomes as New Gene Homes: The Genealogy of ORFans in E. coli
- A single genetic locus in the phytopathogen Pantoea stewartii enables gut colonization and pathogenicity in
- The pea aphid as both host and vector for the phytopathogenic bacterium,1 Pseudomonas syringae2
- JOURNAL OF BACTERIOLOGY, 0021-9193/00/$04.00 0
- Genomics update Radical views of the Tree of Life
- Amelioration of Bacterial Genomes: Rates of Change and Exchange Jeffrey G. Lawrence,1,
- Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimatesemi_2051 1..6
- 10.1101/gr.091785.109Access the most recent version at doi: 2009 19: 1450-1454 originally published online June 5, 2009Genome Res.
- Deletional Bias across the Three Domains of Life Chih-Horng Kuo and Howard Ochman
- 10 Blanchard, J.L. and Schmidt, G.W. (1995) Pervasive migration of organellar DNA to the nucleus in plants. J. Mol. Evol. 41, 397406
- Crystal ball 2007 In this feature, leading researchers in the field of environ-
- The players in a mutualistic symbiosis: Insects, bacteria, viruses, and virulence genes
- Genomes on the shrink Howard Ochman*
- Evolutionary Origins of Genomic Repertoires in Bacteria
- Research Focus A bunch of fun-guys: the whole-genome view of yeast
- Exploring microbial microevolution with microarrays Howard Ochman*, Scott R. Santos
- Dale C, Dunbar H, Moran NA, Ochman H. 2005. Extracting single genomes from heterogenous DNAsamples:Atest case with Carsonella ruddii, the bacterial symbiont of psyllids (Insecta). 6pp. Journal of Insect Science, 5:3,
- Start-up entities in the origin of new genes Vincent Daubin
- -: Exploring the outer limits of bacterial pseudogenes
- Quartet Mapping and the Extent of Lateral Transfer in Bacterial Genomes Vincent Daubin and Howard Ochman
- Environmental Microbiology (2003) 5(2), 116126 2003 Blackwell Publishing Ltd
- Neutral Mutations and Neutral Substitutions in Bacterial Genomes Howard Ochman
- Type III secretion systems and the evolution of mutualistic endosymbiosis
- TRENDS in Microbiology Vol.10 No.1 January 2002 http://tim.trends.com 0966-842X/01/$ see front matter 2001 Elsevier Science Ltd. All rights reserved. PII: S0966-842X(01)02282-X
- Mol. Biol. Evol. 19(8):13501358. 2002 2002 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
- APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 0099-2240/00/$04.00 0
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85521, USA; e-mail: hochman@u.arizona.edu
- Calibrating bacterial evolution Howard Ochman*, Susannah Elwyn, and Nancy A. Moran
- Cell, Vol. 87, 791794, November 29, 1996, Copyright 1996 by Cell Press Pathogenicity Islands: Minireview
- Copyright 0 1993 by the Genetics Societyof America Natural Populationsof Escherichia coli and Salmonella typhimurium
- Copyright 0 1993 by the Genetics Society of America Compositional Heterogeneity and Patternsof Molecular Evolutionin the
- Copyright0 1992 by the Genetics Society of America The Evolutionof Insertion Sequences Within Enteric Bacteria
- NATURE |VOL 405 |18 MAY 2000 |www.nature.com 299 review article
- RESEARCH ARTICLE Structural features and the persistence of acquired
- Examining bacterial species under the specter of gene transfer and exchange
- Loss of DNA Recombinational Repair Enzymes in the Initial Stages of Genome Degeneration
- Erosion of Interaction Networks in Reduced and Degraded Genomes
- The Emergence and Fate of Horizontally Acquired Genes in Escherichia coli
- INFECTION AND IMMUNITY, Dec. 1996, p. 54105412 Vol. 64, No. 12 0019-9567/96/$04.00 0
- a significant force on organelle gene-sequence evolution (37, 38), but selective arguments for
- Eyeing bacterial genomes Howard Ochman
- 27 NOVEMBER 2009 VOL 326 SCIENCE www.sciencemag.org1200 PERSPECTIVES
- TRENDS in Genetics Vol.18 No.7 July 2002 http://tig.trends.com 0168-9525/02/$ see front matter 2002 Elsevier Science Ltd. All rights reserved. PII: S0168-9525(02)02668-9
- ful under broad conditions. More generally, the experimental approach adopted here sug-
- Current Biology 16, R705R710, September 5, 2006 2006 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2006.08.024 ReviewOf What Use Is Sex to Bacteria?
- BioMed Central Open Access
- Mol. Biol. Evol. 18(6):11471150. 2001 2001 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038