Xie, Xiaohui Sunney - School of Information and Computer Science, University of California, Irvine

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Xie, Xiaohui Sunney - School of Information and Computer Science, University of California, Irvine

Annu. Rev. Genomics Hum. Genet. 2005. 6:381406 doi: 10.1146/annurev.genom.6.080604.162234
SUPPLEMENTARY INFORMATION Whole-genome alignment between human, mouse, rat and dog
A family of conserved noncoding elements derived from an ancient transposable element
BIOINFORMATICS ORIGINAL PAPER Vol. 24 no. 17 2008, pages 18431849
A large family of ancient repeat elements in the human genome is under strong selection
BIOINFORMATICS ORIGINAL PAPER Vol. 25 no. 2 2009, pages 167174
INSTITUTE OF PHYSICS PUBLISHING NETWORK: COMPUTATION IN NEURAL SYSTEMS Network: Comput. Neural Syst. 13 (2002) 447456 PII: S0954-898X(02)52994-8
Incorporating Existing Network Information into Gene Network Inference
Identifying novel constrained elements by exploiting bi-ased substitution patterns
10.1101/gr.083477.108Access the most recent version at doi: 2009 19: 567-575 originally published online February 2, 2009Genome Res.
1 Supplementary Methods 1.1 Derivation test of the BBLS calculation
including thousands of CTCF insulator sites Systematic discovery of regulatory motifs in conserved regions of the human genome,
LETTER Communicated by Geoffrey Hinton Equivalence of Backpropagation and Contrastive Hebbian
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
LETTER Communicated by Peter Latham Selectively Grouping Neurons in Recurrent Networks of
Nonlinear dynamics of direction-selective recurrent neural media Xiaohui Xie1,
AREM: aligning short reads from ChIP-Sequencing by expectation maximization
Querying Large Similar Sequences in a Compressed Format Efficiently