Wagner, Andreas - Department of Biochemistry, Universit�t Z�rich

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Wagner, Andreas - Department of Biochemistry, Universit�t Z�rich

This journal is c The Royal Society of Chemistry 2011 Mol. BioSyst., 2011, 7, 10811092 1081 Cite this: Mol. BioSyst., 2011, 7, 10811092
RESEARCH ARTICLE Open Access Genotype networks in metabolic reaction spaces
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Robustness, evolvability, and neutrality Andreas Wagner*
Genome Biology 2005, 6:R50 commentreviewsreportsdepositedresearchrefereedresearchinteractionsinformation
The tension between neutralism and selectionism is at least as old as the field
Lessons from a genetic network about the causes of dominance
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Received 22 May 2003 Accepted 21 August 2003
R E S E A R C H A R T I C L E Batch and continuous culture-based selection strategiesforacetic
Journal of Theoretical Biology 225 (2003) 4557 Risk management in biological evolution
This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon.
Journal of Theoretical Biology 239 (2006) 417434 A model of protein translation including codon bias, nonsense errors,
doi: 10.1098/rsif.2010.0212 published online 9 June 2010J. R. Soc. Interface
Circuit topology and the evolution of robustness in two-gene circadian oscillators
Mol Genet Genomics (2008) 280:397408 DOI 10.1007/s00438-008-0373-y
BIOINFORMATICS Vol. 20 no. 5 2004, pages 689700
NATURE BIOTECHNOLOGY VOL 18 NOVEMBER 2000 http://biotech.nature.com 1121 Genome sequencing is now advancing at a
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Evolutionary Innovations and the Organization of Protein Functions in Genotype Space
Phenotypic robustness can increase phenotypic variability after nongenetic perturbations in gene regulatory circuits
Journal of Bioinformatics and Computational Biology Vol. 8, No. 6 (2010) 10271040
Biology and Philosophy 14: 83101, 1999. 1999 Kluwer Academic Publishers. Printed in the Netherlands.
Adaptation of Saccharomyces cerevisiae to saline stress through laboratory evolution
RESEARCH ARTICLE Open Access Phenotypic plasticity can facilitate adaptive
Specialization Can Drive the Evolution of Modularity Carlos Espinosa-Soto1,2
Theoretical Population Biology 78 (2010) 278288 Contents lists available at ScienceDirect
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`Glocal' Robustness Analysis and Model Discrimination for Circadian Oscillators
www.molecularbiosystems.org Volume5|Number1|January2009|Pages1100 Lauffenburger et al.
Molecular Evolution, Networks in From: Meyers, R.A. (ed.) Encyclopedia of Complexity and System Science. Springer, Heidelberg
Robustness and evolvability: a paradox resolved Andreas Wagner1,2,3,*
Protein robustness promotes evolutionary innovations on large evolutionary time-scales
Gene duplications, robustness and evolutionary innovations
SHORT REVIEW Robustness and evolution: concepts, insights and
Innovation and robustness in complex regulatory gene networks
Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying
Copyright 2007 by the Genetics Society of America DOI: 10.1534/genetics.107.074732
Energy Costs Constrain the Evolution of Gene Expression
RESEARCH ARTICLES Periodic Extinctions of Transposable Elements in Bacterial Lineages: Evidence
Distributed robustness versus redundancy as causes of
Energy Constraints on the Evolution of Gene Expression Andreas Wagner
Molecular Evolution in the Yeast Transcriptional Regulation Network
www.stke.org/cgi/content/full/sigtrans;2003/202/pe41 Page 1 Signal transduction pathways, transcriptional regulation cir-
Asymmetric Sequence Divergence of Duplicate Genes Gavin C. Conant1
Mol. Biol. Evol. 19(10):17601768. 2002 2002 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
http://genomebiology.com/2002/3/5/reviews/1012.1 commentreviewsreportsdepositedresearchinteractionsinformationrefereedresearch
Decoupled evolution of coding region and mRNA expression patterns after gene
JOURNAL OF EXPERIMENTAL ZOOLOGY (MOL DEV EVOL) 285:119127 (1999) 1999 WILEY-LISS, INC.
The fate of duplicated genes: loss or new function?
117Naturwissenschaften 85 (1998) Springer-Verlag 1998 Nonlinear Oscillations in Polyps of the Colonial
1997 Oxford University Press35943604 Nucleic Acids Research, 1997, Vol. 25, No. 18 A computational genomics approach to the
Nonlinearity 9 (1996) 607629. Printed in the UK Can nonlinear epigenetic interactions obscure causal relations
Biol. Cybern. 74, 557-567 (1996) Biological Cybernetics9 Springer-Verla$1996
THEJOURNALOF BIOLOGICAL CHEMISTRY ( c ) 1991 by The American Society for Biochemistry and Molecular Biology, Inc
Notes on using find_max_cover find_max_cover takes as input a list of local alignments, identified by their
Nucleic Acids Research doi:10.1093/nar/gkm597
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The EMBO Journal vol.10 no.3 pp.585-592, 1991 Negative regulation of transcription of the
BioSystems 90 (2007) 475485 New structural variation in evolutionary searches
Advances in Complex Systems, Vol. 7, Nos. 3&4 (2004) 419432 c World Scientific Publishing Company
JOURNAL OF COMPUTATIONAL BIOLOGY Volume 11, Number 1, 2004
Copyright 2000 by the Genetics Society of America The Role of Population Size, Pleiotropy and Fitness Effects of Mutations
Genome Biology 2004, 5:R29 commentreviewsreportsdepositedresearchrefereedresearchinteractionsinformation
Cooperation is Fleeting in the World of Transposable Elements
Mol. Biol. Evol. 17(12):19851987. 2000 2000 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
The small world inside large metabolic networks Andreas Wagner1
Copyright 0 1994 by the Genetics Society of America Epistasis Can Facilitate the Evolution of Reproductive Isolationby Peak Shifts
Mol. Biol. Evol. 18(7):12831292. 2001 2001 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
Reference: Biol. Bull. 196: 1-17. (February, 1999) Dynamics of Gastrovascular Circulation in the
10.1101/gr.193902Access the most recent version at doi: 2002 12: 309-315Genome Res.
Supplementary data Supplementary data associated with this article can be
BRIEF REPORTS Distribution of Transcription Factor
Protein carbon content evolves in response to carbon availability and may influence
Received 6 August 2002 Accepted 12 November 2002
BioSystems 88 (2007) 163172 Alternative routes and mutational robustness in
Multifunctionality and Robustness Trade-Offs in Model Genetic Circuits Olivier C. Martin* and Andreas Wagnery
Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks
NATURAL RESO URCE M O D ELLING Volum e 21, Numb er 2, Sum m er 2008
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RESEARCH ARTICLE Open Access Genotype networks, innovation, and robustness
Copyright 2009 by the Genetics Society of America DOI: 10.1534/genetics.109.104174
RESEARCH ARTICLE Open Access BEL/Pao retrotransposons in metazoan genomes