Gray, Jeffrey J. - Department of Biomolecular and Chemical Engineering, Johns Hopkins University

Advanced Search

Gray, Jeffrey J. - Department of Biomolecular and Chemical Engineering, Johns Hopkins University

Creation of an Allosteric Enzyme by Domain Insertion Gurkan Guntas and Marc Ostermeier*
Docking HPr to HPr Kinase with Partial Backbone Flexibility A thesis submitted to the Johns Hopkins University in conformity with the
of April 28, 2011 This information is current as
De Novo Design of Peptide-Calcite Biomineralization David L. Masica,
BIOINFORMATICS APPLICATIONS NOTE Vol. 26 no. 5 2010, pages 689691
Identification of Structural Mechanisms of HIV-1 Protease Specificity Using Computational Peptide
Analysis of Protein Kinase Autophosphorylation Using Expressed Protein Ligation and Computational Modeling
proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Incorporating biochemical information
High-resolution proteinprotein docking Jeffrey J Gray
1999 Macmillan Magazines Ltd corrections
SYSTEMATIC ANALYSIS OF MOTIONS AND COMMUNICATION NETWORKS IN A BENCHMARK SET OF ALLOSTERIC
PREDICTING THE STRUCTURE AND FUNCTION OF PROTEIN MUTANTS
USING COMPUTATIONAL PROTEIN DOCKING TO MODEL THE STRUCTURE AND SPECIFICITY OF PROTEIN INTERACTIONS
COMPUTATIONAL ANTIBODY STRUCTURE PREDICTION AND ANTIBODY-ANTIGEN DOCKING
Undergraduate Advising Manual Students Entering the Program Fall 2008 or later
Undergraduate Advising Manual Students Entering the Program Fall 2003 or later
Design and synthesis of a b-lactamase activated 5-fluorouracil prodrug Ryan M. Phelan a
Structure Prediction of Domain Insertion Proteins from Structures of Individual Domains
Combinatorial Chemistry & High Throughput Screening, 2006, 9, 301-311 301 1386-2073/06 $50.00+.00 2006 Bentham Science Publishers Ltd.
Engineering allosteric protein switches by domain insertion
Synthetic gene libraries: in search of the optimal Marc Ostermeier
ITCHY Libraries 129 From: Methods in Molecular Biology, vol. 231: Directed Evolution Library Creation: Methods and Protocols
Creating multiple-crossover DNA libraries independent of sequence identity
Journal of Immunological Methods 237 (2000) 175186 www.elsevier.nl/locate/jim
Incremental Truncation as a Strategy in the Engineering of Novel Biocatalysts
NATURE BIOTECHNOLOGY VOL 17 JULY 1999 http://biotech.nature.com 639 When Cinderella disappeared in great haste
1994 3: 1953-1960Protein Sci. G. GEORGIOU, P. VALAX, M. OSTERMEIER and P. M. HOROWITZ
page 152 2008 NNIN REU Research Accomplishments Insulated Polythiophene: Self-Threaded
A novel approach to modeling pH-sensitive regions within proteins 0 A novel approach to modeling pH-sensitive regions within proteins
THEJOUFNUOF BIOLCGICALCHEMISTRY Q 1994by The AmericanSociety for Biochemistry and Molecular Biology, Inc.
Enhanced Catalytic Efficiency of Aminoglycoside Phosphotransferase (30
Marc Ostermeier Johns Hopkins University
Fall 2006 297 he field of chemical engineering has always been
SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in
As easy as flipping a switch? Chapman M Wright, Richard A Heins and Marc Ostermeier
Author's personal copy Conformer Selection and Induced Fit in Flexible
Characterization of the putative surface protein TLP in Plasmodium berghei and Plasmodium falciparum
Ligand binding and allostery can emerge simultaneously JING LIANG,1
Allosteric Proteins are Information Transfer Networks Allosteric Networks are Built from Motions
Enzyme stabilization by domain insertion into a thermophilic protein
EVOLUTION OF PROTEIN FUNCTION BY DOMAIN SWAPPING
Directed evolution of protein switches and their application to the creation of ligand-binding proteins
Theoretical Distribution of Truncation Lengths in Incremental
Protein fragment complementation in M.HhaI DNA methyltransferase Wonchae Choe a,b,1
Local Motions in a Benchmark of Allosteric Proteins Michael D. Daily1
Solution-and Adsorbed-State Structural Ensembles Predicted for the Statherin-Hydroxyapatite System
page 12 National Nanotechnology Infrastructure Network Applications
Modulation of effector affinity by hinge region mutations also modulates switching activity in an engineered
proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Contact rearrangements form
Chemistry & Biology Beyond Cataloging the Library of Babel
I/we would like to make a gift/pledge to the First Year Graduate Student Research Fund in the amount of $______________. This gift is from: me me and my spouse Spouse's name _____________________.
In molecular switching, the recognition of an external signal such as ligand binding by one protein is coupled to the catalytic activity of a second
Toward a Structure Determination Method for Biomineral-Associated Protein Using Combined Solid-
Structure Prediction of Protein-Solid Surface Interactions Reveals a Molecular Recognition Motif of Statherin for
An engineered split M.HhaI-zinc finger fusion lacks the intended methyltransferase specificity
he primary goal of protein engineering is to cre-ate a novel protein Y that possesses some improved
STRUCTURE DETERMINATION AND DESIGN OF BIOMINERAL-ASSOCIATED PROTEINS
Graduate Student Handbook Department of
An externally tunable bacterial band-pass filter Takayuki Sohkaa,1,2
Adsorption of colloidal particles by Brownian dynamics simulation: Kinetics and surface structures
Published online 28 April 2008 Nucleic Acids Research, 2008, Vol. 36, Web Server issue W233W238 doi:10.1093/nar/gkn216
Ryan Harrison STS: Student Report
Applying Linear Interaction Energy Method for Rational Design of Noncompetitive Allosteric Inhibitors of the Sarco-and Endoplasmic Reticulum
Modulation of Calcium Oxalate Dihydrate Growth by Selective Crystal-face Binding of Phosphorylated
proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Modeling the structure of mAb 14B7 bound
proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS A generalized approach to sampling backbone
An analysis of beauty as it is related to the ratio
Heterodimeric DNA methyltransferases as a platform for creating designer zinc finger
proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Toward high-resolution homology modeling
The interaction of proteins with solid surfaces Jeffrey J Gray
proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS NMR characterization of an engineered
Available online at www.sciencedirect.com Designing switchable enzymes
Eukaryotic Protein Disulfide Isomerase Complements Escherichia coli dsbA Mutants and Increases the Yield of
Mathematical expressions useful in the construction, description and evaluation of protein libraries
CAPRI Rounds 35 Reveal Promising Successes and Future Challenges for RosettaDock
Sites in the AAV5 capsid tolerant to deletions and tandem duplications Kaoru Hida a
Nucleic Acids Research, 2009, 16 doi:10.1093/nar/gkp387
Biotechnology Letters 23: 303310, 2001. 2001 Kluwer Academic Publishers. Printed in the Netherlands.
Truncation of the caspase-related subunit (Gpi8p) of Saccharomyces cerevisiae GPI transamidase: Dimerization revealed
Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins
Directed evolution for drug and nucleic acid delivery Kaoru Hida a
NATURE BIOTECHNOLOGY VOL 17 DECEMBER 1999 http://biotech.nature.com 1205 A combinatorial approach to hybrid
ProteinProtein Docking Predictions for the CAPRI Jeffrey J. Gray,* Stewart E. Moughon, Tanja Kortemme, Ora Schueler-Furman, Kira M.S. Misura,
Mechanism of Polyubiquitin Chain Recognition by the Human Ubiquitin Conjugating Enzyme Ube2g2*S
ForPeerReview Modeling the structure of mAb 14B7 bound to the anthrax protective
3398 Chem. Commun., 2011, 47, 33983400 This journal is c The Royal Society of Chemistry 2011 Cite this: Chem. Commun., 2011, 47, 33983400
BioMed Central Page 1 of 9
SCRATCHY Libraries 143 From: Methods in Molecular Biology, vol. 231: Directed Evolution Library Creation: Methods and Protocols
Undergraduate Advising Manual Students Entering the Program Fall 2008 or later
RosettaSurface (in Rosetta 2) Tutorial Author: Liza Moon Young Lee
Protein Switches Identified From Diverse Insertion Libraries Created Using S1 Nuclease Digestion of
Published: July 28, 2011 r 2011 American Chemical Society 11520 dx.doi.org/10.1021/la201904k |Langmuir 2011, 27, 1152011527
proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Computed structures of point deletion
A protein therapeutic modality founded on molecular regulation
Undergraduate Advising Manual Students Entering the Program Fall 2008 or later
Published: April 21, 2011 r 2011 American Chemical Society 3966 dx.doi.org/10.1021/ma200355j |Macromolecules 2011, 44, 39663972
Undergraduate Advising Manual Students Entering the Program Fall 2008 or later
A Hot-Spot Motif Characterizes the Interface between a Designed Ankyrin-Repeat Protein and Its Target Ligand