Elber, Ron - Department of Computer Science, Cornell University

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Elber, Ron - Department of Computer Science, Cornell University

Extending Molecular Dynamics Timescales with Milestoning: Example of Complex Kinetics in A
Atomically detailed potentials to recognize native and approximate protein structures
Long-timescale simulation methods Keywords: Molecular dynamics, classical action, reaction paths, path sampling,
Biophysical Journal-Biophysical Letters Biophysical Journal-Biophysical Letters L01
Calculation of Classical Trajectories with Boundary Value Formulation
Calculation of point-to-point short time and rare trajectories with boundary value formulation
Revisiting and parallelizing SHAKE Yael Weinbach1
Probing sequence-structure relationships in proteins: Application of simple energy functions to the inverse folding problem
Computing time scales from reaction coordinates by milestoning Tony Faradjian and Ron Elber
Computational Analysis of Sequence Selection Mechanisms Leonid Meyerguz1
SSALN: An alignment algorithm using structure-dependent substitution matrices and gap penalties learned from structurally aligned protein pairs
Support Vector Training of Protein Alignment Chun-Nam John Yu1
Classification: Biological Sciences, Biophysics The network of sequence flow between protein structures
The dynamics of water evaporation from partially
The Evolutionary Capacity of Protein Structures Leonid Meyerguz