- Metabolic Engineering 3, 98 99 (2001) WEB SITE REVIEW
- Optimization-Based Framework for Inferring and Testing Hypothesized
- HUMAN RESOURCE MANAGEMENT CERTIFICATE SPRING 2011
- Manish C.Saraf and Costas D.Maranas1 Department of Chemical Engineering, The Pennsylvania State University,
- Physica A 373 (2007) 796810 Large-scale inference and graph-theoretical analysis of
- Metabolic Engineering 5 (2003) 7173 Web Site Review
- Midterm Supply Chain Planning Under Demand Uncertainty : Customer Demand Satisfaction and Inventory Management
- Managing demand uncertainty in supply chain planning Anshuman Gupta, Costas D. Maranas *
- Metabolic Engineering 8 (2006) 113 An optimization framework for identifying reaction
- Computers and Chemical Engineering 29 (2005) 565576 Large-scale inference of the transcriptional regulation of Bacillus subtilis
- A Two-Stage Modeling and Solution Framework for Multisite Midterm Planning under Demand Uncertainty
- OPTSTRAIN: A HIERARCHICAL METABOLIC PATHWAY DISCOVERY AND DESIGN
- A Computational Framework for the Topological Analysis and Targeted Disruption of Signal Transduction Networks
- Design of Multiproduct Batch Plants under Demand Uncertainty with Staged Capacity Expansions
- Elucidation and Structural Analysis of Conserved Pools for Genome-Scale Metabolic Reconstructions
- Extending Iterative Protein Redesign and Optimization (IPRO) in Protein Library Design for Ligand Specificity
- Flux Coupling Analysis of Genome-Scale Metabolic Network Reconstructions
- Evolution and evolvability of proteins in the laboratory Michael W. Deem*
- J. theor. Biol. (2002) 219, 917 doi:10.1006/yjtbi.3102, available online at http://www.idealibrary.com on
- Analysis of NADPH Supply During Xylitol Production by Engineered Escherichia coli
- Probing the Performance Limits of the Escherichia coli Metabolic Network
- Construction of an E. Coli Genome-Scale Atom Mapping Model for MFA Calculations
- OptCDR: a general computational method for the design of antibody complementarity determining
- Biotechnology DOI 10.1002/biot.201000171 Biotechnol. J. 2010, 5, 716725
- OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted
- Computational design of Candida boidinii xylose reductase for altered cofactor
- GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions
- A Genome-Scale Metabolic Reconstruction of Mycoplasma genitalium, iPS189
- Enzyme and Microbial Technology 44 (2009) 170175 Contents lists available at ScienceDirect
- OptGraft: A computational procedure for transferring a binding site onto
- Vol. 22 no. 2 2006, pages 209214 doi:10.1093/bioinformatics/bti780BIOINFORMATICS ORIGINAL PAPER
- COMMUNICATION TO THE EDITOR In Silico Design and Adaptive
- Valuation and Design of Pharmaceutical R&D Licensing Deals
- Molecular Design Using Quantum Chemical Calculations for Property Estimation
- A MIXED INTEGER LINEAR PROGRAMMING (MILP) FRAMEWORK FOR INFERRING TIME DELAY IN GENE REGULATORY NETWORKS
- FamClash: A method for ranking the activity of engineered enzymes
- Computational Challenges in Combinatorial Library Design for Protein Engineering
- Exploring the Overproduction of Amino Acids Using the Bilevel Optimization
- OptKnock: A Bilevel Programming Framework for Identifying Gene Knockout
- Manish C.Saraf, Gregory L.Moore and Costas D.Maranas1
- Identifying residueresidue clashes in protein hybrids by using a second-order mean-field approach
- PROCESS DESIGN AND CONTROL Market-Based Pollution Abatement Strategies: Risk Management
- * To whom all correspondence should be addressed. E-mail: costas@psu.edu, Phone: (814) 863-9958, Web page: http://fenske.che.psu.edu/faculty/cmaranas/
- RISK MANAGEMENT IN REAL OPTIONS BASED PHARMACEUTICAL PORTFOLIO PLANNING
- GENERAL RESEARCH Real Options Based Analysis of Optimal Pharmaceutical Research
- 1096-7176/02 $35.00 2002 Elsevier Science (USA)
- Minimal Reaction Sets for Escherichia coli Metabolism under Different Growth Requirements and Uptake Environments
- 1096-7176/01 $35.00 Copyright 2001 by Academic Press
- Metabolic Engineering 3, 193 194 (2001) WEB SITE REVIEW
- * Author to whom correspondence should be addressed. E-mail: costas@psu.edu
- Design of Surfactant Solutions with Optimal Target Properties Kyle V. Camarda, Brian W. Bonnell, Costas D. Maranas and Ramanathan Nagarajan
- Optimization Accounting for Property Prediction Uncertainty in Polymer Design
- RESEARCH ARTICLE Open Access Metabolic reconstruction of the archaeon
- RESEARCH ARTICLE Open Access Improving the iMM904 S. cerevisiae metabolic
- Regular Article Improved computational performance of MFA using elementary metabolite
- Modeling the Effect of Chemotaxis on Glioblastoma Tumor Progression
- Design of Combinatorial Protein Libraries of Optimal Size Manish C. Saraf, Anshuman Gupta, and Costas D. Maranas*
- /sco4:/jobs2/ELSEVIER/cace/week.14/Pcace1804y.001;/sco4:/jobs2/ELSEVIER/cace/week.14/Pcace1804y.002 Computers and Chemical Engineering 000 (2000) 000000
- IPRO: An Iterative Computational Protein Library Redesign and Optimization Procedure
- V I S I T U S O N T H E W E B : t h i n k a g a i n . p s u . e d u VOLUME 5, NUMBER 1, SPRING 2010For more information, call 814-865-7521 or e-mail yourlife@psu.edu
- Predicting crossover generation in DNA shuffling Gregory L. Moore*, Costas D. Maranas*
- Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism
- COSTBI-892; NO. OF PAGES 6 Please cite this article in press as: Pantazes RJ, et al. Recent advances in computational protein design, Curr Opin Struct Biol (2011), doi:10.1016/j.sbi.2011.04.005
- BioMed Central Page 1 of 19
- Journal of Global Optimization, 4, 135-170 (1994) 9 1994 Kluwer Academic Publishers. Printed in the Netherlands.
- DIMACS Series in Discrete Mathematics and Theoretical Computer Science
- A global optimization approach for Lennard-Jones microclusters Costas D. Maranas and Christodoulos A. Floudasa)
- Real-Options-Based Planning Strategies under Uncertainty Anshuman Gupta and Costas D. Maranas*
- Journal of Global Optimization 7: 143-182, 1995. 143 9 1995 KluwerAcademicPublishers. Printed in theNetherlands.
- BioMed Central Page 1 of 16
- Computers them. Engng Vol. 22, Suppl., pp. Sl89-4792, 1998 0 1998Publishedby Elsevier Science Ltd. All rights reserved
- Abstract --Understanding the metabolic function of microorganisms has recently received a lot of attention due to
- Available online at www.sciencedirect.com Computers and Chemical Engineering 32 (2008) 20652071
- NEW RESULTS IN THE PACKING OF EQUAL CIRCLES IN A SQUARE
- Optimal protein library design using recombination or point mutations based on sequence-based
- Genome Scale Reconstruction of a Salmonella Metabolic Model COMPARISON OF SIMILARITY AND DIFFERENCES WITH A COMMENSAL ESCHERICHIA
- Quantitative Assessment of Uncertainty in the Optimization of
- 10.1101/gr.2872004Access the most recent version at doi: 2004 14: 2367-2376Genome Res.
- A Computational Procedure for Optimal Engineering Interventions Using Kinetic Models of Metabolism
- Annals of Operations Research 42(1993)85-117 85 Global optimization for
- Locating All Homogeneous Azeotropes In Multicomponent Mixtures
- Journal of Theoretical Biology 232 (2005) 5569 DEMSIM: a discrete event based mechanistic simulation
- Computerschem.EngngVol.20,Suppl.,pp.$413-$418,1996 Copyright 1996ElsevierScienceLtd
- , , 127 (1995) c 1995 Kluwer Academic Publishers, Boston. Manufactured in The Netherlands.
- Genome-scale gene/reaction essentiality and synthetic lethality analysis
- BioMed Central Page 1 of 13
- Subscriber access provided by Penn State | University Libraries Industrial & Engineering Chemistry Research is published by the American Chemical
- Subscriber access provided by Penn State | University Libraries Industrial & Engineering Chemistry Research is published by the American Chemical
- A GLOBAL OPTIMIZATION METHOD, BB, FOR PROCESS DESIGN
- \I) Pergamon Computers and Chemical Engineering Supplement (1999) S467-$470
- Design of Single-Product Campaign Batch Plants under Demand Uncertainty
- OPTIMAL SELECTION OF ENZYME LEVELS USING LARGE-SCALE KINETIC MODELS Evgeni V. Nikolaev, Priti Pharkya, Costas D. Maranas, and Antonios Armaou
- Subscriber access provided by Penn State | University Libraries Industrial & Engineering Chemistry Research is published by the American Chemical
- A CASE STUDY ON THE DESIGN OF PHARMACEUTICAL R&D LICENSING DEALS
- Metabolic Engineering 9 (2007) 387405 Metabolic flux elucidation for large-scale models using
- OptCDR: a general computational method for the design of antibody complementarity determining
- Optimal Molecular Design under Property Prediction Uncertainty
- Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA
- Subscriber access provided by Penn State | University Libraries Industrial & Engineering Chemistry Research is published by the American Chemical
- ACCELERATED PUBLICATION Identification of Optimal Measurement Sets for
- ELSEVIER Computers and Chemical Engineering 24 (2000) 693-699 Engineering
- Global Optimization in Generalized Geometric Programming
- ComputersChem.EnongVol.22.No. 6 pp. 747-763,1998 1998ElsevierScienceLtd
- Process Systems Engineering Optimal Synthesis of Refrigeration Cycles
- A deterministic global optimization approach for molecular structure determination
- DATABASE Open Access MetRxn: a knowledgebase of metabolites and
- OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial
