- Catalytic DNA (deoxyribozymes) for synthetic applications--current abilities and future prospects
- UNIT 11.11Site-Specific Fluorescent Labeling of Large RNAs with Pyrene
- Kost, Gerdt, Pradeepkumar & Silverman, Org. Biomol. Chem. page 1 Electronic Supplementary Information
- J. Org. Chem. Supporting Information page S1 Synthesis and Application of a 5-Aldehyde Phosphoramidite
- Nucleic Acids Research Supplementary Material page S1 A Deoxyribozyme That Synthesizes 2',5'-Branched RNA with Any Branch-Site Nucleotide
- In Vitro Evolution of an RNA-Cleaving DNA Enzyme into an RNA Ligase Switches the Selectivity from 3-5 to 2-5
- Adenosine Is Inherently Favored as the Branch-Site RNA Nucleotide in a Structural Context That Resembles Natural RNA Splicing
- ACS Chemical Biology Supporting Information page S1 Experimental Tests of Two Proofreading Mechanisms for 5-Splice Site Selection
- Characterization of Deoxyribozymes That Synthesize Branched RNA Yangming Wang and Scott K. Silverman*
- Supporting Information for Sachdeva & Silverman, Chem. Commun. page S1 Electronic Supplementary Information
- Chemistry & Biology, Vol. 11, January, 2004, 2004 Elsevier Science Ltd. All rights reserved. DOI 10.1016/j.chembiol.2004.01.004 mountable competitive advantage over 10-23 and otherBreaking Up Is Easy To Do
- Deoxyribozymes with 2-5 RNA Ligase Activity Amber Flynn-Charlebois, Yangming Wang, Tracey K. Prior, Imran Rashid,
- Supporting Information Wiley-VCH 2007
- J. Am. Chem. Soc. Supporting Information for World Wide Web Edition page S1 A Deoxyribozyme That Forms a Three-Helix-Junction Complex With Its
- A Deoxyribozyme that Forms a Three-Helix-Junction Complex with its RNA Substrates and has General RNA
- DNA-catalyzed serine side chain reactivity and selectivityw Amit Sachdeva and Scott K. Silverman*
- Deoxyribozymes That Synthesize Branched and Lariat RNA Yangming Wang and Scott K. Silverman*
- Convergent and General One-Step DNA-Catalyzed Synthesis of Multiply
- Energetics and Cooperativity of Tertiary Hydrogen Bonds in RNA Structure Scott K. Silverman* and Thomas R. Cech*
- Efficient control of group I intron ribozyme catalysis by DNA constraintsw
- Nucleic Acids Research Supplementary Material page S1 Structure-Function Correlations Derived from
- Deoxyribozymes: useful DNA catalysts in vitro and in vivo D. A. Baum and S. K. Silverman*
- Neuron, Vol. 20, 619624, April, 1998, Copyright 1998 by Cell Press Flash Decaging of Tyrosine Neurotechnique
- Supporting Information Copyright Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, 2007
- Metals in motion The conversion of water to dioxygen occurs in photosystem II, a multi-
- Synthesis and Application of a 5-Aldehyde Phosphoramidite for Covalent Attachment of
- A Forced March across an RNA Folding Landscape Scott K. Silverman1,*
- Rational Modification of a Selection Strategy Leads to Deoxyribozymes that Create Native 3-5 RNA Linkages
- J. Am. Chem. Soc. Supporting Information for World Wide Web Edition page S1 General Deoxyribozyme-Catalyzed Synthesis of Native 35 RNA Linkages
- This journal is c The Royal Society of Chemistry 2011 Chem. Commun., 2011, 47, 17491751 1749 Merely two mutations switch a DNA-hydrolyzing deoxyribozyme from
- Proc. Natl. Acad. Sci. USA Vol. 93, pp. 1542915434, December 1996
- Improved deoxyribozymes for synthesis of covalently branched DNA and RNA
- Fluorescence of covalently attached pyrene as a general RNA folding probe
- Multimodal optical sensing and analyte specificity using single-walled carbon nanotubes
- Supplementary Information for Xiao, Allen & Silverman, Chem. Commun. page S1 Electronic Supplementary Information
- Supporting Information Wiley-VCH 2008
- Supporting Information for Chandra & Silverman, J. Am. Chem. Soc. page S1 DNA and RNA Can Be Equally Efficient Catalysts for Carbon-Carbon Bond Formation
- Biochemistry Supporting Information page S1 DNA-Catalyzed Covalent Modification of Amino Acid Side Chains
- Supporting Information for Xiao, Chandra & Silverman, Biochemistry page S1 Functional Compromises Among pH Tolerance, Site Specificity,
- Applications of DNA DOI: 10.1002/anie.200906345
- Biochemistry Supporting Information Multi-Vector Fluorescence Analysis of the xpt Guanine Riboswitch
- Deoxyribozymes: Selection Design and Serendipity in the Development of DNA
- Nature Chemical Biology Supplementary Information page S1 DNA-catalyzed sequence-specific hydrolysis of DNA
- C H A P T E R F I V E Use of Deoxyribozymes
- Electronic Supplementary Information Efficient control of group I intron ribozyme catalysis by DNA constraints
- Organic Letters Supporting Information page S1 Convergent and General One-Step DNA-Catalyzed Synthesis of Multiply Branched DNA
- Improvement of DNA adenylation using T4 DNA ligase with a template strand and a strategically mismatched acceptor strand
- Catalytic DNA DOI: 10.1002/anie.200702217
- Ty1 reverse transcriptase does not read through the proposed 29,59-branched retrotransposition
- RNA Modifications DOI: 10.1002/anie.200700357
- Supporting Information Wiley-VCH 2007
- Experimental Tests of Two Proofreading Mechanisms for 5=-Splice Site Selection
- Efficient RNA 59-adenylation by T4 DNA ligase to facilitate practical applications
- Biochemistry Supporting Information for World Wide Web Edition page S1 Adenosine is Inherently Favored as the Branch-Site RNA Nucleotide
- Supporting Information Wiley-VCH 2006
- SURVEY AND SUMMARY In vitro selection, characterization, and
- RNA Folding DOI: 10.1002/anie.200502928
- Supporting Information Wiley-VCH 2005
- Mimicking the First Step of RNA Splicing: An Artificial DNA Enzyme Can Synthesize Branched RNA Using an Oligonucleotide Leaving Group as a
- Biochemistry Supporting Information for World Wide Web Edition page S1 Mimicking the First Step of RNA Splicing
- JACS Supporting Information page S1 DNA Constraints Allow Rational Control of Macromolecular Conformation
- DNA Catalysis DOI: 10.1002/anie.200501643
- Supporting Information Wiley-VCH 2005
- Deoxyribozymes go full circle Deoxyribozymes, or DNA enzymes, are single-stranded DNA
- -Dependent Deoxyribozymes That Form Natural and Unnatural RNA Linkages Kelly A. Hoadley, Whitney E. Purtha, Amanda C. Wolf, Amber Flynn-Charlebois, and Scott K. Silverman*
- Biochemistry Supporting Information for World Wide Web Edition page S1 -Dependent Deoxyribozymes That Form
- Synthesis of Amine-and Thiol-Modified Nucleoside Phosphoramidites for Site-Specific Introduction of Biophysical
- Parallel Selections In Vitro Reveal a Preference for 25 RNA Ligation upon Deoxyribozyme-Mediated Opening of a 2,3-Cyclic Phosphate
- Directing the Outcome of Deoxyribozyme Selections To Favor Native 3-5 RNA Yangming Wang and Scott K. Silverman*
- J. Am. Chem. Soc. Supporting Information for World Wide Web Edition page S1 Rational Modification of a Selection Strategy Leads to
- Structurefunction correlations derived from faster variants of a RNA ligase deoxyribozyme
- Supplementary Methods Selection strategy and new deoxyribozymes. The selection strategy is summarized in Supplementary
- Biochemistry Supporting Information for World Wide Web Edition page S1 Characterization of Deoxyribozymes that Synthesize Branched RNA
- Optimization and Generality of a Small Deoxyribozyme that Ligates RNA
- J. Mol. Biol. Supplementary Material page S1 Optimization and Generality of a Small Deoxyribozyme that Ligates RNA
- J. Am. Chem. Soc. Supporting Information page S1 In vitro Evolution of an RNA-Cleaving DNA Enzyme into an RNA Ligase
- MINI-REVIEW Rube Goldberg goes (ribo)nuclear? Molecular switches
- Accelerated Publications The GAAA Tetraloop-Receptor Interaction Contributes Differentially to Folding
- Asymmetrical Contributions of Subunit Pore Regions to Ion Selectivity in an Inward Rectifier K Channel
- 504 EXPRESSION SYSTEMS [28] [28] In Vivo Incorporation of Unnatural Amino Acids into
- Subunit Stoichiometry of a Heteromultimeric G protein-coupled Inward-rectifier K Channel*
- Do High-Spin Topology Rules Apply to Charged Polyradicals? Theoretical and Experimental Evaluation of Pyridiniums as
- J. Phys. Chem. 1993,97, 13273-13283 13273 Conformational Effects on High-Spin Organic Molecules1
- atom. The indium lies almost at the center of gravity of the ring spanned by the five manganese atoms (distance 8.5 pm;
- Supplementary Figures, Table, and Methods for: Multi-modal optical sensing and analyte specificity via
- DOI: 10.1002/cbic.200700437 Allosteric Control of Ribozyme
- pubs.acs.org/Biochemistry Published on Web 10/06/2010 r 2010 American Chemical Society 9630 Biochemistry 2010, 49, 96309637
- pubs.acs.org/Biochemistry Published on Web 01/28/2010 r 2010 American Chemical Society 1596 Biochemistry 2010, 49, 15961605
- Recent Advances in DNA Catalysis Claudia Hobartner, Scott K. Silverman
- Control of macromolecular structure and function using covalently attached double-
- Preprint copy of chapter from Functional Nucleic Acids for Sensing and Other Ana-lytical Applications, Y. Lu and Y. Li, eds.; Springer: New York, 2007.
- Multiple Folding Pathways for the P4-P6 RNA Domain Scott K. Silverman,*, Michael L. Deras, Sarah A. Woodson, Stephen A. Scaringe,| and Thomas R. Cech*,,
- Selective Stabilization of Natively Folded RNA Structure by DNA Constraints Joseph P. Gerdt, Chandrasekhar V. Miduturu, and Scott K. Silverman*
- Combinatorial chemistry and molecular diversity Tools for molecular diversification and their applications in
- 718 VOLUME 5 NUMBER 10 OctOBER 2009 nature chemical biology b r i e f com mu n i cat i on s
- A general two-step strategy to synthesize lariat RNAs YANGMING WANG and SCOTT K. SILVERMAN
- J. Am. Chem. Soc. Supporting Information page S1 Deoxyribozymes that Synthesize Branched and Lariat RNA
- RNA Tertiary Folding Monitored by Fluorescence of Covalently Attached Pyrene Scott K. Silverman* and Thomas R. Cech*
- DOI:10.1039/b411910j T h i s j o u r n a l i s T h e R o y a l S o c i e t y o f C h e m i s t r y 2 0 0 4 2 7 0 1O r g . B i o m o l . C h e m . , 2 0 0 4 , 2 , 2 7 0 1 2 7 0 6
- InsideIllinoisJuly 7, 2005 Vol. 25, No. 1
- 7672 J. Am. Chem. Sot. 1991, 113, 7672-7675 We find several possible explanations for the absence of higher
- Quantifying the energetic interplay of RNA tertiary and secondary structure interactions
- J. Am. Chem. Soc. Supporting Information page S1 Deoxyribozymes with 2'5' RNA Ligase Activity
- J. Am. Chem. Soc. Supporting Information page S1 Selective Stabilization of Natively Folded RNA Structure by DNA Constraints
- General Deoxyribozyme-Catalyzed Synthesis of Native 3-5 RNA Linkages Whitney E. Purtha, Rebecca L. Coppins, Mary K. Smalley, and Scott K. Silverman*
- Biochemistry Supporting Information for World Wide Web Edition page S1 Directing the Outcome of Deoxyribozyme Selections to Favor Native 3'5' RNA Ligation
- Practical and general synthesis of 5 -adenylated RNA (5 -AppRNA)
- DNA and RNA Can Be Equally Efficient Catalysts for Carbon-Carbon Bond Madhavaiah Chandra and Scott K. Silverman*
- Hbartner, Pradeepkumar & Silverman, Chem. Commun. page 1 Electronic Supplementary Information
- Advanced Article Article Contents
- DNA Constraints Allow Rational Control of Macromolecular Conformation Chandrasekhar V. Miduturu and Scott K. Silverman*
- DNA Nanotechnology DOI: 10.1002/anie.200504124
- An early transition state for folding of the P4-P6 RNA domain
- Supplementary Information for Sachdeva & Silverman, Org. Biomol. Chem. page S1 Electronic Supplementary Information
- Biomolecular Dynamic Article Links
- Supporting Information Wiley-VCH 2011
- Catalytic DNA DOI: 10.1002/anie.201104976
- Establishing broad generality of DNA catalysts for site-specific hydrolysis of single-stranded DNA
- Supplementary Material for Xiao, Wehrmann, Ibrahim & Silverman, Nucleic Acids Res. page S1 Establishing Broad Generality of DNA Catalysts
