Ferrell Jr., James E. -Departments of Chemical and Systems Biology & Biochemistry, Stanford University

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Ferrell Jr., James E. -Departments of Chemical and Systems Biology & Biochemistry, Stanford University

Supporting Text Theoretical Foundations. Here, we describe the general theoretical framework that
cross-linking the material makes it possible to assemble composite structures that differ
In vitro T-cell activation SKG or BALB/c T cells (3.0 104
Molecular Cell Signaling Motifs and Weber's Law
Current Biology Vol 18 No 6 a simple graphical method well-known
Substrate Competition as a Source of Ultrasensitivity
Leading Edge Cell 128, February 9, 2007 2007 Elsevier Inc. 441
ORIGINAL ARTICLE B-Raf and C-Raf are required for Ras-stimulated p42 MAP kinase
MOLECULAR AND CELLULAR BIOLOGY, July 2006, p. 53005309 Vol. 26, No. 14 0270-7306/06/$08.00 0 doi:10.1128/MCB.00273-06
Cell, Vol. 122, 565578, August 26, 2005, Copyright 2005 by Elsevier Inc. DOI 10.1016/j.cell.2005.06.016 Systems-Level Dissection of the Cell-Cycle
MOLECULAR AND CELLULAR BIOLOGY, Dec. 2005, p. 1058010590 Vol. 25, No. 23 0270-7306/05/$08.00 0 doi:10.1128/MCB.25.23.1058010590.2005
Allelic Variants of the Canine Heavy Neurofilament (NFH) Subunit and Extensive Phosphorylation
becomes either cytosolic or is seen in patches around mutants themselves show no targeting defects. Since myosin II is a barbed end-directed myosin, it is possiblethe cortex instead of as a basal crescent. Importantly,
Cell signaling systems that contain positive-feedback loops or double-negative feedback loops can, in principle, convert
Molecular Biology of the Cell Vol. 13, 454468, February 2002
The Classical Progesterone Receptor Associates with p42 MAPK and Is Involved in Phosphatidylinositol 3-Kinase Signaling in Xenopus
c-Jun N-terminal Kinase Activation in Xenopus laevis Eggs and Embryos
Cloning and Characterization of Xenopus Rsk2, the Predominant p90 Rsk Isozyme in Oocytes and Eggs*
Inhibition of Progesterone-induced Xenopus Oocyte Maturation by Nm231
Molecular Biology of the Cell Vol. 10, 37293743, November 1999
Building a cellular switch: more lessons from a good egg
18. M. R. Ruiz, S. K. Leggett, F. Allard, ibid. 491, L107 19. X. Delfosse et al., Astron. Astrophys. 327, L25 (1997).
Molecular Biology of the Cell Vol. 8, 21572169, November 1997
Mechanistic Studies of the Dual Phosphorylation of Mitogen-activated Protein Kinase*
The Rockefeller University Press, 0021-9525/97/04/433/11 $2.00 The Journal of Cell Biology, Volume 137, Number 2, April 21, 1997 433443 433
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 1007810083, September 1996
The EMBO Journal vol.15 no.9 pp.2169-2173, 1996 Dependence of Mos-induced Cdc2 activation on
Meeting Report Systems Biologists Seek Fuller Integration of Systems Biology
SYSTEMS BIOLOGY Onthecellcycleanditsswitches
Cell, Volume 128 Supplemental Data
absence or presence of inhibitors, P6 5 DIV cul-tures were washed twice with medium (BME) con-
Silencing Gene Expression with Dicer-Generated siRNA Pools
DOI: 10.1126/science.1156951 , 126 (2008);321Science
Simple, realistic models of complex biological processes: Positive feedback and bistability in a cell fate switch and a cell cycle oscillator
S1Supplemental Data Mos Mediates the Mitotic Activation of
we fully understand the mechanisms behind microbial control of carbon cycling. Given
more physically accessible to the catalyst. The catalyst can also be attracted to a specific loca-
Detection of multistability, bifurcations, and hysteresis in a large class of biological
A role for GPRx, a novel GPR3/6/12-related G-protein coupled receptor, in the maintenance of meiotic arrest in Xenopus laevis oocytes
1176 Research Paper Bistability in the JNK cascade
Systematic Identification of mRNAs Recruited to Argonaute 2 by Specific microRNAs and Corresponding
M Phase Phosphorylation of Cytoplasmic Dynein Intermediate Chain and p150Glued
Xenopus oocyte maturation: new lessons from a good egg
Molecular Biology of the Cell Vol. 11, 887896, March 2000
NATURE CELL BIOLOGY ADVANCE ONLINE PUBLICATION www.nature.com/naturecellbiology 1 Building a cell cycle oscillator: hysteresis
Book review A Clear View of
Supplemental Data: Feedback Regulation of Opposing Enzymes Generates Robust, All-or-None Bistable Responses
Work by Peter Hnggi of the University of Augsburg in Germany and his
NEWS AND VIEWS A noisy `Start' to the cell cycle
Question & Answer QQ&&AA
Myers et al | Journal of RNAi and Gene Silencing | July 2006 | Vol 2, No 2 | 181-194 | OPEN ACCESS RESEARCH ARTICLE
Molecular Cell Ultrasensitivity in the Regulation
Molecular Biology of the Cell Vol. 21, 31493161, September 15, 2010
A Mechanism for the Evolution of Phosphorylation Sites
Meeting Report Report on EUUSA Workshop: How Systems Biology Can Advance
Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible
Leading Edge Modeling the Cell Cycle
Neuron, Vol. 39, 283297, July 17, 2003, Copyright 2003 by Cell Press Selective Regulation of Neurite Extension