Cox, Michael M. - Department of Biochemistry, University of Wisconsin at Madison

• Situational Repair of Replication Forks ROLES OF RecG AND RecA PROTEINS*
• COMMUNICATION Two Modes of Binding of DinI to RecA Filament Provide
• Modulating cellular recombination potential through alterations in RecA structure and regulationmmi_7424 1523..1538
• pubs.acs.org/Biochemistry Published on Web 08/26/2010 r 2010 American Chemical Society 8266 Biochemistry 2010, 49, 82668275
• Less Is More: Neisseria gonorrhoeae RecX Protein Stimulates Recombination by Inhibiting RecA*S
• X-ray Crystal Structure of the Bacterial Conjugation Factor PsiB, a Negative Regulator of RecA*
• Disassembly of Escherichia coli RecA E38K/ C17 Nucleoprotein Filaments Is Required to Complete DNA
• A new look at the human Rad51 protein Michael M. Cox1
• JOURNAL OF BACTERIOLOGY, Aug. 2009, p. 52405252 Vol. 191, No. 16 0021-9193/09/$08.00 0 doi:10.1128/JB.00502-09
• DdrB Protein, an Alternative Deinococcus radiodurans SSB Induced by Ionizing Radiation*
• The active form of DNA polymerase V is UmuD92CRecAATP
• RecFOR and RecOR as Distinct RecA Loading Pathways* Received for publication,September 17, 2008, and in revised form, November 4, 2008 Published, JBC Papers in Press,November 4, 2008, DOI 10.1074/jbc.M807220200
• Defective Dissociation of a "Slow" RecA Mutant Protein Imparts an Escherichia coli Growth Defect*
• JOURNAL OF BACTERIOLOGY, Apr. 2008, p. 30363045 Vol. 190, No. 8 0021-9193/08/$08.00 0 doi:10.1128/JB.01006-07
• The RecA-family recombinases promote the exchange of genetic information between two homologous DNA
• JOURNAL OF BACTERIOLOGY, Aug. 2006, p. 58125820 Vol. 188, No. 16 0021-9193/06/$08.00 0 doi:10.1128/JB.00358-06
• Complementation of One RecA Protein Point Mutation by Another
• Inhibition of RecA Protein Function by the RdgC Protein from Escherichia coli*S
• PLoS Biology | www.plosbiology.org 2165 November 2006 | Volume 4 | Issue 11 | e384 | e385 Correction: Morphological Evolution Is Accelerated among Island Mammals
• Molecular Cell, Vol. 17, 561572, February 18, 2005, Copyright 2005 by Elsevier Inc. DOI 10.1016/j.molcel.2005.01.006 DNA Polymerase V and RecA Protein,
• Preserving Genome Integrity: The DdrA Protein
• The DinI Protein Stabilizes RecA Protein Filaments* Received for publication, March 19, 2004, and in revised form, May 10, 2004
• Crystal structure of the Deinococcus radiodurans single-stranded DNA-binding protein suggests a
• A DNA Pairing-enhanced Conformation of Bacterial RecA Proteins* Received for publication, August 4, 2003, and in revised form, October 3, 2003
• C-terminal Deletions of the Escherichia coli RecA Protein CHARACTERIZATION OF IN VIVO AND IN VITRO EFFECTS*
• Magnesium Ion-dependent Activation of the RecA Protein Involves the C Terminus*
• The C Terminus of the Escherichia coli RecA Protein Modulates the DNA Binding Competition with Single-stranded DNA-binding
• The RecA proteins of Deinococcus radiodurans and Escherichia coli promote DNA strand exchange
• Annu. Rev. Genet. 2001. 35:5382 Copyright c 2000 by Annual Reviews. All rights reserved
• RecA Protein Filaments Disassemble in the 5 to 3 Direction on Single-stranded DNA*
• DNA Pairing and Strand Exchange by the Escherichia coli RecA and Yeast Rad51 Proteins without ATP Hydrolysis
• RecA protein promotes the regression of stalled replication forks in vitro
• RecA Protein Promotes Strand Exchange with DNA Substrates Containing Isoguanine and 5-Methyl Isocytosine
• Quantitative Analysis of the Kinetics of End-dependent Disassembly of RecA Filaments
• RecA Protein Filaments: End-dependent Dissociation from ssDNA and Stabilization by RecO and RecR
• RecA Filament Dynamics during DNA Strand Exchange Reactions* (Received for publication, November 27, 1996)
• JOURNAL OF BACTERIOLOGY, 0021-9193/97/$04.00 0
• Cell, Vol. 91, 347356, October 31, 1997, Copyright 1997 by Cell Press Recombinational DNA Repair: The RecF and RecR
• Proc. Natl. Acad. Sci. USA Vol. 94, pp. 1176411766, October 1997
• DNA Strand Exchange Promoted by RecA K72R TWO REACTION PHASES WITH DIFFERENT Mg2
• Evidence for the Coupling of ATP Hydrolysis to the Final (Extension) Phase of RecA Protein-mediated DNA Strand Exchange*
• J. Mol. Biol. (1996) 257, 756774 RecA Protein Dynamics in the Interior of RecA
• Allosteric Effects of RuvA Protein, ATP, and DNA on RuvB Protein-Mediated ATP Hydrolysis
• A Protein Dissociation Step Limits Turnover in FLP Recombinase-mediated Site-specific Recombination*
• Nucleic Acids Research, 1994, Vol. 22, No. 25 5695-5701 The fate of deleted DNA produced during programmed
• THEJOURNALOF BIOLOGICALCHEMISTRY 0 1994 by The American Society for Biochemistry and Molecular Biology, Inc.
• TIBS 19 -MAY 1994 REVIEWS THE MAJOR CONSUMPTION of nucleo-
• THEJOURNALOF BIOLOGICALCHEMISTRY 0 1992by The American Society for Biochemistry and MolecularBiology, Inc.
• Volume 17 Number 8 1989 Nucleic Acids Research The histone-like H protein of Escherichia coli is ribosomal protein S3
• THEJOURNALOF BIoLOClCAL CHEMISTRY 01987 by The American Society of Biological Chemists, Inc.
• www.sciencemag.org SCIENCE VOL 302 24 OCTOBER 2003 565 CREDITS:D.N.THOMAS
• Proc. Natd. Acad. Sci. USA Vol. 85, pp. 4628-4632, July 1988
• An Interaction between the Escherichia coli RecF and RecR Proteins Dependent on ATP and Double-stranded DNA*
• THEJOURNALOF BIOLOGICALCHEMISTRY 01987by The American Society of Biological Chemists. Inc
• Perspective Rising from the Ashes: DNA Repair in Deinococcus
• (Circular) (Plasmid) MAPSORT of: Plh29.Seq check: 6918 from: 1 to: 11675 With 8 enzymes: SALI BAMHI ECORI NHEI CLAI KPNI SPHI XBAI
• THEJOURNAL OF BIOLOGICALCHEMISTRY 01989by The American Society for Biochemistry and MolecularBiology, Inc.
• MOLECULAR AND CELLULAR BIOLOGY, Jan. 1990, p. 235-242 Vol. 10, No. 1 0270-7306/90/010235-08$02.00/0
• Two distinct modes of RecA action are required for DNA polymerase V-catalyzed translesion synthesis
• c c 1992 by The American Society for Biochemistry and Molecular Biology, Inc. THEJOURNAL OF BIOLOGICALCHEMISTRY Vol. 267, No. 11,Issue of April 15, pp. 7794-7805,1992
• SSB Antagonizes RecX-RecA Interaction* Received for publication,February 25, 2008, and in revised form, April 1, 2008 Published, JBC Papers in Press,April 1, 2008, DOI 10.1074/jbc.M801511200
• RecA K72R Filament Formation Defects Reveal an Oligomeric RecA Species Involved in Filament Extension*
• Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA
• Introduction More than 50 years ago, Weigle made the pivotal dis-
• THEJOURNALOF BIOLOGICALCHEMISTRY Q 1993by The American Societyfor Biochemistry and MolecularBiology,Inc
• SSB Protein Limits RecOR Binding onto Single-stranded DNA* Received for publication,November 29, 2006, and in revised form, January 17, 2007 Published, JBC Papers in Press,February 1, 2007, DOI 10.1074/jbc.M611007200
• ATP Hydrolysis and DNA Binding by the Escherichia coli RecF Protein*
• THEJOURNALOF BIOLOGICALCHEMISTRY Vol. 258, No. 4, Issue of February25. pp. 2%6-259!!,1983
• 1978 Author index (continued) Tanaka.S. 1964
• THE JOURNAL OF BIOLOGICAL CHEMISTRY 0 1990 by The American Society for Biochemistry and Molecular Biology, Inc.
• 7666 Biochemistry 1990, 29. 7666-7676 Fonda, M. L. (1972) Biochemistry 11, 1304-1309.
• Biochemistry 1990, 29, 1671-1683 1611 Inhibition of RecA Protein Promoted ATP Hydrolysis. 2. Longitudinal Assembly
• 0 1990 by The American Society for Biochemistry and Molecular Biology, Inc. Vol. 265, No. 28, Issue of October 5, pp. 16896-16912, 1990
• THE JOURNAL OP B~OLCKXCALCHEMISTRY 0 1990 by The American Society for Biochemistry and Molecular Biology, Inc.
• J. Mol. Biol. (1989) 205, 487-492 Extent of Duplex DNA Underwinding Induced by
• The EMBO Journal vol.7 no.6 pp. 1 845 -1852, 1988 The functional significance of DNA sequence structure
• 7886 Biochemistry 1988, 27, 7886-7894 ACKNOWLEDGMENTS
• J. Mol. Biol. (1988) 203, 479-493 General Mechanism for RecA Protein
• MOLECULAR AND CELLULAR BIOLOGY, Sept. 1988, p. 3784-3796 Vol. 8, No. 9 0270-7306/88/093784-13$02.00/0
• Ann.Rev. Biochem.1987.56.'229~2 Copyright1987by AnnualReviewslnc. All rights reserved
• 1482 Biochemistry 1986, 25. 1482-1494 Cerutti, P. A. (1 976) in Photochemistry and Photobiology of
• THEJOURNALOP BIOLOGICALCHEMISTRY 0 1986 byThe American Societyof Biological Chemists, Inc.
• THEJOURNALOF BIOLOGICALCHEMISTRY 8 1986by The American Societyof Biological Chemists,Inc.
• THEJOURNAL OF BIOLOGICALCHEMISTRY 01986 by The American Society of Biological Chemists, Inc.
• THEJOURNALOY BIOLOIXCAI.CH~~MISTRV Vnl. 257. No. 14. Iswe of duly 25. pp. 852:i-8S:J2, 19W
• 572 J. Am. Chem. SOC.1981, 103, 572-580 Adduct 35: mp 223-225 O C ; IR (KBr) 1753,1702,1460,1250,1120,
• Volume 9 Number 21981 Nucleic Acids Research Renaturation of DNA: a novel reaction of histones
• Proc. NatL Acad. Sci. USA Vol. 78, No. 10, pp. 6018-6022, October 1981
• 5954 Journal of the American Chemical Society / 100:18 / August 30, 1978 CCl:CN, the activation parameters are nearly identical with
• Creating Directed Double-strand Breaks with the Ref Protein A NOVEL RecA-DEPENDENT NUCLEASE FROM BACTERIOPHAGE P1*S
• (Circular) (Plasmid) MAPSORT of: Peaw127.Seq check: 8385 from: 1 to: 7978 PBR322 with the amp.R region reversed
• RecA-mediated SOS induction requires an extended filament conformation but no ATP hydrolysis
• This article was downloaded by:[University of Wisconsin Madison] [University of Wisconsin Madison]
• RecA acts in trans to allow replication of damaged DNA by DNA polymerase V
• THEJOURNALOF BIOLOGICALCHEMISTRY Vol. 256, No.9. Issue of May 10, pp. 46764678, 1981
• Structure and Biochemical Activities of Escherichia coli Received for publication,December 7, 2010, and in revised form, January 14, 2011 Published, JBC Papers in Press,February 5, 2011, DOI 10.1074/jbc.M110.210187
• 10.1101/gad.9.2.248Access the most recent version at doi: 1995 9: 248-255Genes & Dev.
• 5790 J. Am. Chem. SOC.1987, 109, 5790-5800 Concerted General Base and Bifunctional General Acid
• J. Mol. Biol. (1996) 264, 696712 Characterization of a Mutant RecA Protein that
• RecA as a Motor Protein TESTING MODELS FOR THE ROLE OF ATP HYDROLYSIS IN DNA STRAND EXCHANGE*
• THEJOURNALOF BIOLOGICALCHEMISTRY Q 1992 by The American Societyfor Biochemistry and Molecular Biology, Inc
• Biochemistry 1995, 34, 9809-9818 9809 RuvB Protein-Mediated ATP Hydrolysis: Functional Asymmetry in the RuvB
• Biochemistry 1995,34, 10859-10866 10859 Quantitative RecA Protein Binding to the Hybrid Duplex Product of DNA Strand
• 2005 Nature Publishing Group *Department of
• Regulation of Single-stranded DNA Binding by the C Termini of Escherichia coli Single-stranded DNA-binding (SSB) Protein*S
• J. Mol. Biol. (1989) 205, 695-711 Dissociation Pathway for recA Nucleoprotein
• Molecular Cell An SOS Inhibitor that Binds to Free RecA Protein
• The Rad51-dependent Pairing of Long DNA Substrates Is Stabilized by Replication Protein A*
• 10.1101/gad.9.16.2053Access the most recent version at doi: 1995 9: 2053-2064Genes & Dev.
• The DinI and RecX Proteins Are Competing Modulators of RecA Function*
• 5616 Biochemistry 1987, 26, 5616-5625 Porath, J., & Larsson, B. (1978) J. Chromatogr.155, 47-68.
• Organized Unidirectional Waves of ATP Hydrolysis within a RecA Filament
• (Circular) (Plasmid) MAPSORT of: Peaw135.Seq check: 3436 from: 1 to: 5850 With 12 enzymes: PSTI XBAI AATII ALWNI BAMHI HINDIII BGLII KPNI NOTI SALI SMA
• THE JOURNAL OF BIOLOGICAL. CHEMISTRY (0 1990 by The American Society for Biochemistry and Molecular Biology, Inc.
• Historical overview: Searching for replication help in all of the rec places
• bustness" hypothesis (Preitner et al., 2002). A second ribonucleotide reductase lies at the center of an elabo-rately regulated pathway that supplies not only the en-possible function for the second feedback loop is to
• (Circular) (Plasmid) MAPSORT of: Peaw133.Seq check: 311 from: 1 to: 8044 PBR322 with the amp.R region reversed
• Proc. Nati. Acad. Sci. USA Vol. 82, pp. 7270-7274, November 1985
• 760 Biochemistry 1985, 24, 760-767 Light Scattering Studies of the recA Protein of Escherichia coli: Relationship
• Molecular Cell, Vol. 1, 309317, January, 1998, Copyright 1998 by Cell Press On the Mechanism of RecA-Mediated Repair
• JOURNAL OF BACTERIOLOGY, Mar. 2002, p. 16491660 Vol. 184, No. 6 0021-9193/02/$04.00 0 DOI: 10.1128/JB.184.6.16491660.2002
• THEJOURNALOF BIOLOGICALCHEMISTRY Vol. 258, No. 4, Issue of February25. pp. 2%6-259!!,1983
• Mutation Research 510 (2002) 107120 The nonmutagenic repair of broken replication
• THEJOURNALOF BIOLOGICALCHEMISTRY 01991hy The AmericanSociety for Biochemistry and MolecularBiology, Inc
• Polar Destabilization of DNA Duplexes with Single-Stranded Overhangs by the Deinococcus radiodurans SSB Protein
• Inhibition of RecA Protein by the Escherichia coli RecX Protein MODULATION BY THE RecA C TERMINUS AND FILAMENT FUNCTIONAL STATE*
• Biochemistry 1990, 29, 837-843 837 Stabilization of recA Protein-ssDNA Complexes by the Single-Stranded DNA
• NATURE |VOL 404 |2 MARCH 2000 |www.nature.com 37 The importance of repairing stalled
• 0 1992 by The American Society for Biochemistry and Molecular B i o l o g y , OF BIOLOGICAL CHEMISTRY
• 0 1994 by The American Societyfor Biochemistry and Molecular Biology, Inc. THE JOURNALOF BIOLOGICALCHEMISTRY Vol. 269, No. 32, Issue of August 12, pp. 20653-20661,1994
• Roles of DNA Polymerase V and RecA Protein in SOS Damage-Induced Katharina Schlacher, Phuong Pham, Michael M. Cox, and Myron F. Goodman*,
• Critical Reviews in Biochemistry and Molecular Biology, 43:289318, 2008 Copyright c Informa UK Ltd.
• THEJOURNAL OF BIOLOGICALCHEMISTRY 0 1987 by The American Society of BiologicalChemists, Inc.
• Recombinational DNA Repair in Bacteria
• J. Mol. BioE.(1988) 201. 405421 DNA Recognition by the FLP Recombinase of the
• BioMed Central Page 1 of 12
• Molecular Cell 21, 4150, January 6, 2006 2006 Elsevier Inc. DOI 10.1016/j.molcel.2005.11.011 The RecF Protein Antagonizes RecX
• (Circular) (Plasmid) MAPSORT of: Peaw116.Seq check: 4303 from: 1 to: 5850 Mismatch: 0 MinCuts = 1 MaxCuts: 100000
• Purification and Characterization of the RecA Protein from Neisseria gonorrhoeae
• Molecular Cell, Vol. 6, 885897, October, 2000, Copyright 2000 by Cell Press Crystal Structure of a Flp RecombinaseHolliday
• THE BACTERIAL RECA PROTEIN AND THE RECOMBINATIONAL DNA REPAIR OF
• JOURNAL OF BACTERIOLOGY, Oct. 2008, p. 64756482 Vol. 190, No. 19 0021-9193/08/$08.00 0 doi:10.1128/JB.01165-07
• Molecular Cell, Vol. 15, 789798, September 10, 2004, Copyright 2004 by Cell Press A RecA Filament Capping Mechanism
• THE JOURNALOF BIOLOGICALCHEMISTRY Q 1988by The American Society for Biochemistryand MolecularBiology, Inc.
• Volume 15 Number 16 1987 Nucleic Acids Research Purification of the FLP site-specific recombinase by affinity chromatography and re-examination
• Investigating Deinococcus radiodurans RecA Protein Filament Formation on Double-Stranded DNA by a Real-Time
• SSB Antagonizes RecX-RecA Interaction* Received for publication,February 25, 2008, and in revised form, April 1, 2008 Published, JBC Papers in Press,April 1, 2008, DOI 10.1074/jbc.M801511200
• DdrB Protein, an Alternative Deinococcus radiodurans SSB Induced by Ionizing Radiation*
• Regulation of Single-stranded DNA Binding by the C Termini of Escherichia coli Single-stranded DNA-binding (SSB) Protein*S
• Situational Repair of Replication Forks ROLES OF RecG AND RecA PROTEINS*
• Inhibition of RecA Protein by the Escherichia coli RecX Protein MODULATION BY THE RecA C TERMINUS AND FILAMENT FUNCTIONAL STATE*
• Inhibition of RecA Protein Function by the RdgC Protein from Escherichia coli*S
• DNA Repair 10 (2011) 12231231 Contents lists available at SciVerse ScienceDirect
• SSB Protein Limits RecOR Binding onto Single-stranded DNA* Received for publication,November 29, 2006, and in revised form, January 17, 2007 Published, JBC Papers in Press,February 1, 2007, DOI 10.1074/jbc.M611007200
• 2006, 188(16):5812. DOI: 10.1128/JB.00358-06.J. Bacteriol. M. Cox and Vladislav A. Lanzov
• Published Ahead of Print 5 June 2009. 2009, 191(16):5240. DOI: 10.1128/JB.00502-09.J. Bacteriol.
• The DinI Protein Stabilizes RecA Protein Filaments* Received for publication, March 19, 2004, and in revised form, May 10, 2004
• RecFOR and RecOR as Distinct RecA Loading Pathways* Received for publication,September 17, 2008, and in revised form, November 4, 2008 Published, JBC Papers in Press,November 4, 2008, DOI 10.1074/jbc.M807220200
• Published Ahead of Print 22 February 2008. 2008, 190(8):3036. DOI: 10.1128/JB.01006-07.J. Bacteriol.
• Complementation of One RecA Protein Point Mutation by Another
• Organized Unidirectional Waves of ATP Hydrolysis within a RecA Filament
• Critical Reviews in Biochemistry and Molecular Biology, 42:4163, 2007 Copyright c Informa Healthcare
• The DinI and RecX Proteins Are Competing Modulators of RecA Function*
• Developing Single-Molecule TPM Experiments for Direct Observation of Successful RecA-Mediated Strand
• Defective Dissociation of a "Slow" RecA Mutant Protein Imparts an Escherichia coli Growth Defect*
• The Rad51-dependent Pairing of Long DNA Substrates Is Stabilized by Replication Protein A*
• Proc. Natl. Acad. Sci. USA Vol. 94, pp. 1176411766, October 1997
• Alignment of 3 (but Not 4) DNA Strands within a RecA Protein
• Biochemistry 1990, 29, 837-843 837 Stabilization of recA Protein-ssDNA Complexes by the Single-Stranded DNA
• J. Mol. BioE.(1988) 201. 405421 DNA Recognition by the FLP Recombinase of the
• RecA protein promotes the regression of stalled replication forks in vitro
• Molecular Cell, Vol. 1, 309317, January, 1998, Copyright 1998 by Cell Press On the Mechanism of RecA-Mediated Repair
• iVIolecular Microbiology (1991) 5(6), 1295-1299 ADONIS 0950382X91001434 MicroReview
• TIBS 19 -MAY 1994 REVIEWS THE MAJOR CONSUMPTION of nucleo-
• 7666 Biochemistry 1990, 29. 7666-7676 Fonda, M. L. (1972) Biochemistry 11, 1304-1309.
• Published Ahead of Print 1 August 2008. 2008, 190(19):6475. DOI: 10.1128/JB.01165-07.J. Bacteriol.
• J. Mol. Biol. (1989) 205, 695-711 Dissociation Pathway for recA Nucleoprotein
• 10.1101/gad.9.16.2053Access the most recent version at doi: 1995 9: 2053-2064Genes Dev.
• Biochemistry 1995, 34, 9809-9818 9809 RuvB Protein-Mediated ATP Hydrolysis: Functional Asymmetry in the RuvB
• Gene, 152 (1995) 135 136 1995 Elsevier Science B.V. All rights reserved. 0378-1119/95/$9.50
• Volume 9 Number 21981 Nucleic Acids Research Renaturation of DNA: a novel reaction of histones
• THEJOURNALOF BIOLOGICALCHEMISTRY Vol. 258, No. 4, Issue of February25. pp. 2%6-259!!,1983
• RecA Protein Promotes Strand Exchange with DNA Substrates Containing Isoguanine and 5-Methyl Isocytosine
• Volume 15 Number 16 1987 Nucleic Acids Research Purification of the FLP site-specific recombinase by affinity chromatography and re-examination
• Magnesium Ion-dependent Activation of the RecA Protein Involves the C Terminus*
• As pointed out by Ca~npbell'~),the real biological function of recombination systems is enigmatic and often ignored. As
• THE JOURNAL OF BIOLOGICAL CHEMISTRY 0 1990 by The American Society for Biochemistry and Molecular Biology, Inc.
• Two distinct modes of RecA action are required for DNA polymerase V-catalyzed translesion synthesis
• Recombinational DNA Repair in Bacteria
• 0 1990 by The American Society for Biochemistry and Molecular Biology, Inc. Vol. 265, No. 28, Issue of October 5, pp. 16896-16912, 1990
• THE JOURNAL OF BIOLOGICAL. CHEMISTRY (0 1990 by The American Society for Biochemistry and Molecular Biology, Inc.
• Quantitative Analysis of the Kinetics of End-dependent Disassembly of RecA Filaments
• An Interaction between the Escherichia coli RecF and RecR Proteins Dependent on ATP and Double-stranded DNA*
• DNA Pairing and Strand Exchange by the Escherichia coli RecA and Yeast Rad51 Proteins without ATP Hydrolysis
• THEJOURNALOF BIoLOClCAL CHEMISTRY 01987 by The American Society of Biological Chemists, Inc.
• THEJOURNALOY BIOLOIXCAI.CH~~MISTRV Vnl. 257. No. 14. Iswe of duly 25. pp. 852:i-8S:J2, 19W
• A Protein Dissociation Step Limits Turnover in FLP Recombinase-mediated Site-specific Recombination*
• THEJOURNALOF BIOLOGICALCHEMISTRY Q 1993by The American Societyfor Biochemistry and MolecularBiology,Inc
• MOLECULAR AND CELLULAR BIOLOGY, Jan. 1990, p. 235-242 Vol. 10, No. 1 0270-7306/90/010235-08$02.00/0
• 7886 Biochemistry 1988, 27, 7886-7894 ACKNOWLEDGMENTS
• THEJOURNALOF BIOLOGICALCHEMISTRY 0 1992by The American Society for Biochemistry and MolecularBiology, Inc.
• Proc. Nati. Acad. Sci. USA Vol. 82, pp. 7270-7274, November 1985
• THEJOURNAL OF BIOLOGICALCHEMISTRY 01986 by The American Society of Biological Chemists, Inc.
• THEJOURNALOF BIOLOGICALCHEMISTRY 0 1994 by The American Society for Biochemistry and Molecular Biology, Inc.
• 1997, 179(19):6076.J. Bacteriol. L C Huang, E A Wood and M M Cox
• Biochemistry 1990, 29, 1671-1683 1611 Inhibition of RecA Protein Promoted ATP Hydrolysis. 2. Longitudinal Assembly
• THEJOURNAL OF BIOLOGICALCHEMISTRY 01989by The American Society for Biochemistry and MolecularBiology, Inc.
• RecA as a Motor Protein TESTING MODELS FOR THE ROLE OF ATP HYDROLYSIS IN DNA STRAND EXCHANGE*
• Annu. Rev. Genet. 2001. 35:5382 Copyright c 2000 by Annual Reviews. All rights reserved
• J. Mol. Biol. (1996) 257, 756774 RecA Protein Dynamics in the Interior of RecA
• 1482 Biochemistry 1986, 25. 1482-1494 Cerutti, P. A. (1 976) in Photochemistry and Photobiology of
• 760 Biochemistry 1985, 24, 760-767 Light Scattering Studies of the recA Protein of Escherichia coli: Relationship
• J. Mol. Biol. (1996) 264, 696712 Characterization of a Mutant RecA Protein that
• RecA Protein Filaments: End-dependent Dissociation from ssDNA and Stabilization by RecO and RecR
• THEJOURNALOF BIOLOGICALCHEMISTRY 8 1986by The American Societyof Biological Chemists,Inc.
• THEJOURNALOF BIOLOGICALCHEMISTRY 01987by The American Society of Biological Chemists. Inc
• THEJOURNALOF BIOLOGICALCHEMISTRY 01991hy The AmericanSociety for Biochemistry and MolecularBiology, Inc
• Historical overview: Searching for replication help in all of the rec places
• Molecular Cell, Vol. 6, 885897, October, 2000, Copyright 2000 by Cell Press Crystal Structure of a Flp RecombinaseHolliday
• Ann.Rev. Biochem.1987.56.'229~2 Copyright1987by AnnualReviewslnc. All rights reserved
• 5616 Biochemistry 1987, 26, 5616-5625 Porath, J., & Larsson, B. (1978) J. Chromatogr.155, 47-68.
• 580 J. Am. Chem. Soc. 1981,103, 580-587 The existence of an isotope effect maximum means that there
• NATURE |VOL 404 |2 MARCH 2000 |www.nature.com 37 The importance of repairing stalled
• 5956 Journal of the American Chemical Society / 100:18 1 August 30, 1978 mum observed here is sharp and that this sharpness may be
• Sergei V.Saveliev and Michael M.Cox1 Department of Biochemistry, University of Wisconsin-Madison,
• Molecular Cell An SOS Inhibitor that Binds to Free RecA Protein
• Cell, Vol. 91, 347356, October 31, 1997, Copyright 1997 by Cell Press Recombinational DNA Repair: The RecF and RecR
• THEJOURNALOF BIOLOGICALCHEMISTRY Q 1992 by The American Societyfor Biochemistry and Molecular Biology, Inc
• 5790 J. Am. Chem. SOC.1987, 109, 5790-5800 Concerted General Base and Bifunctional General Acid
• Julie M.Bork1 , Michael M.Cox2
• THE JOURNAL OP B~OLCKXCALCHEMISTRY 0 1990 by The American Society for Biochemistry and Molecular Biology, Inc.
• 10.1128/JB.184.6.1649-1660.2002. 2002, 184(6):1649. DOI:J. Bacteriol.
• Disassembly of Escherichia coli RecA E38K/ C17 Nucleoprotein Filaments Is Required to Complete DNA
• 10.1101/gad.9.2.248Access the most recent version at doi: 1995 9: 248-255Genes & Dev.
• THEJOURNALOF BIOLOGICALCHEMISTRY Vol. 256, No.9. Issue of May 10, pp. 46764678, 1981
• Nucleic Acids Research, 1994, Vol. 22, No. 25 5695-5701 The fate of deleted DNA produced during programmed
• THEJOURNALOP BIOLOGICALCHEMISTRY 0 1986 byThe American Societyof Biological Chemists, Inc.
• J. Mol. Biol. (1989) 205, 487-492 Extent of Duplex DNA Underwinding Induced by
• The EMBO Journal vol.7 no.6 pp. 1 845 -1852, 1988 The functional significance of DNA sequence structure
• Volume 17 Number 8 1989 Nucleic Acids Research The histone-like H protein of Escherichia coli is ribosomal protein S3
• Proc. Natl. Acad. Sci. USA Vol. 80, pp. 4223-4227, July 1983
• 0 1994 by The American Societyfor Biochemistry and Molecular Biology, Inc. THE JOURNALOF BIOLOGICALCHEMISTRY Vol. 269, No. 32, Issue of August 12, pp. 20653-20661,1994
• 5954 Journal of the American Chemical Society / 100:18 / August 30, 1978 CCl:CN, the activation parameters are nearly identical with
• Proc. NatL Acad. Sci. USA Vol. 78, No. 10, pp. 6018-6022, October 1981
• THEJOURNAL OF BIOLOGICALCHEMISTRY 0 1987 by The American Society of BiologicalChemists, Inc.
• Biochemistry 1995,34, 10859-10866 10859 Quantitative RecA Protein Binding to the Hybrid Duplex Product of DNA Strand
• Allosteric Effects of RuvA Protein, ATP, and DNA on RuvB Protein-Mediated ATP Hydrolysis
• MOLECULAR AND CELLULAR BIOLOGY, Sept. 1988, p. 3784-3796 Vol. 8, No. 9 0270-7306/88/093784-13$02.00/0
• The EMBO Journal vol.15 no.11 pp.2858-2869, 1996 Developmentally programmed DNA deletion in
• Proc. Natd. Acad. Sci. USA Vol. 85, pp. 4628-4632, July 1988
• RecA Filament Dynamics during DNA Strand Exchange Reactions* (Received for publication, November 27, 1996)
• 1978 Author index (continued) Tanaka.S. 1964
• c c 1992 by The American Society for Biochemistry and Molecular Biology, Inc. THEJOURNAL OF BIOLOGICALCHEMISTRY Vol. 267, No. 11,Issue of April 15, pp. 7794-7805,1992
• The RecA proteins of Deinococcus radiodurans and Escherichia coli promote DNA strand exchange
• Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA
• Biochemistry and Molecular Biology The RecA Protein
• Proc. Natl Acad. Sci. USA Vol. 78, No. 6, pp. 3433-3437, June 1981
• THE JOURNALOF BIOLOGICALCHEMISTRY Q 1988by The American Society for Biochemistryand MolecularBiology, Inc.
• The C Terminus of the Escherichia coli RecA Protein Modulates the DNA Binding Competition with Single-stranded DNA-binding
• A DNA Pairing-enhanced Conformation of Bacterial RecA Proteins* Received for publication, August 4, 2003, and in revised form, October 3, 2003
• www.sciencemag.org SCIENCE VOL 302 24 OCTOBER 2003 565 CREDITS:D.N.THOMAS
• RecA Protein Filaments Disassemble in the 5 to 3 Direction on Single-stranded DNA*
• ATP Hydrolysis and DNA Binding by the Escherichia coli RecF Protein*
• bustness" hypothesis (Preitner et al., 2002). A second ribonucleotide reductase lies at the center of an elabo-rately regulated pathway that supplies not only the en-possible function for the second feedback loop is to
• DNA Strand Exchange Promoted by RecA K72R TWO REACTION PHASES WITH DIFFERENT Mg2
• J. Mol. Biol. (1988) 203, 479-493 General Mechanism for RecA Protein
• C-terminal Deletions of the Escherichia coli RecA Protein CHARACTERIZATION OF IN VIVO AND IN VITRO EFFECTS*
• 0 1992 by The American Society for Biochemistry and Molecular B i o l o g y , OF BIOLOGICAL CHEMISTRY
• Evidence for the Coupling of ATP Hydrolysis to the Final (Extension) Phase of RecA Protein-mediated DNA Strand Exchange*
• THEJOURNAL OF BIOLOGICALCHEMISTRY Vol. 258, No. 4, Issue of February 25, pp. 2577-2585,1983