- Cooperative Hybridization of Oligonucleotides Supplementary Information
- Using lateral capillary forces to compute by self-assembly
- COMPLEXITY OF SELF-ASSEMBLED SHAPES DAVID SOLOVEICHIK AND ERIK WINFREE
- A simple DNA gate motif for synthesizing large-scale circuits
- arXiv:1101.0723v1[q-bio.MN]4Jan2011 Bistability of an In Vitro Synthetic Autoregulatory Switch
- Low-Complexity Codes for Random and Clustered High-Order Failures in Storage Arrays
- An Efficient Algorithm for Generating Trajectories of Stochastic Gene Regulation Reactions \Lambda
- MDS Array Codes for Correcting CrissCross Mario Blaum
- Computing in the RAIN: A Reliable Array of Independent Nodes \Lambda
- Towards Domain-Based Sequence Design for DNA Strand Displacement Reactions
- Constrained Codes as Networks of Relations Moshe Schwartz
- Coding and Scheduling for Efficient LossResilient Data Broadcasting Kevin Foltz Lihao Xu Jehoshua Bruck
- A Consistent History Link Connectivity Protocol \Lambda Paul LeMahieu Jehoshua Bruck
- SUPPLEMENTARY INFORMATION doi: 10.1038/nnano.2009.311
- r XXXX American Chemical Society A dx.doi.org/10.1021/ja109089q |J. Am. Chem. Soc. XXXX, XXX, 000000 pubs.acs.org/JACS
- XCode: MDS Array Codes with Optimal Encoding \Lambda Lihao Xu Jehoshua Bruck
- Fast Simulation of Robust Stochastic Chemical Reaction Networks
- Adaptive Bloom Filter Jehoshua Bruck Jie Gao Anxiao (Andrew) Jiang
- Splitting Schedules for Internet Broadcast Communication Kevin Foltz Jehoshua Bruck
- Statistical Learning of Arbitrary Computable Classifiers David Soloveichik
- A Simple DNA Gate Motif for Synthesizing Large-Scale Circuits
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 16, Number 3, 2009
- PartialSum Queries in OLAP Data Cubes Using Covering Codes ChingTien Ho Jehoshua Bruck \Lambda Rakesh Agrawal
- Covering algorithms, continuum percolation and the geometry of wireless networks
- Supporting Information for: Toward Reliable Algorithmic Self-Assembly of DNA Tiles
- One Dimensional Boundaries for DNA Tile Self-Assembly (Extended Abstract)
- Analysis of Checkpointing Schemes for Multiprocessor Systems Avi Ziv \Lambda
- A Coding Approach for Detection of Tampering in WriteOnce Optical Disks
- Simulations of Computing by SelfAssembly Erik Winfree
- Memory Allocation In Information Storage Networks 1 Anxiao (Andrew) Jiang and Jehoshua Bruck
- How crystals that sense and respond to their environments could evolve
- Proofreading Tile Sets: Error Correction for Algorithmic SelfAssembly
- An OnLine Algorithm for Checkpoint Placement \Lambda IBM Israel, Science and Technology Center
- Improving the Performance of Data Servers Using Array Lihao Xu Jehoshua Bruck
- Algorithmic Self-Assembly of DNA Erik Winfree
- DIMACS Series in Discrete Mathematics and Theoretical Computer Science
- On Optimal Placements of Processors in FaultTolerant Tori Networks
- Low Density MDS Codes and Factors of Complete Graphs \Lambda Lihao Xu Vasken Bohossian Jehoshua Bruck David G. Wagner
- DIMACS Series in Discrete Mathematics and Theoretical Computer Science
- Efficient Message Passing Interface (MPI) for Parallel Computing on Clusters of Workstations
- Programming with Well-Mixed Chemical Kinetics
- A COMPARISON THEOREM FOR HAMILTONIAN VECTOR FIELDS
- Proofreading Tile Sets: Error Correction for Algorithmic Self-Assembly
- SelfAssembled Circuit Patterns Matthew Cook, Paul W.K. Rothemund, and Erik Winfree
- Tolerating Faults in Counting Networks MARC D. RIEDEL AND JEHOSHUA BRUCK friedel,bruckg@paradise.caltech.edu
- Diversity Coloring for Distributed Storage in Mobile Networks
- Universal Computation via Selfassembly of DNA: Some Theory and Experiments
- FaultTolerant Cube Graphs and Coding Theory Jehoshua Bruck 1 ChingTien Ho 2
- A DNA and restriction enzyme implementation of Turing Ma (Turing machines; Universal Turing machines; recombinant DNA; nonpalindromic endonucleases; class IIS
- FaultTolerant Meshes with Small Degree \Lambda Jehoshua Bruck y Robert Cypher z ChingTien Ho x
- Scaffolded DNA origami: from generalized multi-crossovers to polygonal networks
- r XXXX American Chemical Society A dx.doi.org/10.1021/ja1073239 |J. Am. Chem. Soc. XXXX, XXX, 000000 pubs.acs.org/JACS
- Optimizing Tile Concentrations to Minimize Errors and Time for DNA Tile Self-assembly
- A Geometric Theorem for Approximate Disk Covering Algorithms
- Algorithmic Aspects of Cyclic Combinational Circuit Marc Riedel and Jehoshua Bruck
- SelfReplication and Evolution of DNA Crystals Rebecca Schulman and Erik Winfree
- Supporting Information Barish et al. 10.1073/pnas.0808736106
- DOI: 10.1126/science.1132493 , 1585 (2006);314Science
- Combinatorial Optimization Problems in SelfAssembly # Leonard Adleman
- Interleaving Schemes on Circulant Graphs Aleksandrs Slivkins
- A Group Membership Algorithm with a Practical Speci cation
- A Leader Election Protocol for Fault Recovery in Asynchronous FullyConnected Networks \Lambda
- Paradigms for Computational Nucleic Acid Design Robert M. Dirks
- Complexity of Compact Proofreading for Self-assembled Patterns
- Efficient Turing-universal computation with DNA polymers (extended abstract)
- Programmable Control of Nucleation for Algorithmic Self-Assembly
- One Dimensional Boundaries for DNA Tile SelfAssembly
- Performance Optimization of Checkpointing Schemes With Task Duplication \Lambda
- Simulations of Computing by SelfAssembly Erik Winfree
- One Dimensional Boundaries for DNA Tile Self-Assembly
- Whiplash PCR for O(1) Computing Erik Winfree
- Journal of Biomolecular Structure & Dynamics, ISSN 0739-1102 Conversation 11, Issue #2 (2000) 0-940030-81-0
- Programmable Neural Logic Vasken Bohossian Paul Hasler Jehoshua Bruck
- Splitting the Scheduling Headache Kevin Foltz Jehoshua Bruck
- Two Computational Primitives for Algorithmic Self-Assembly: Copying
- arXiv:cond-mat/0607317v113Jul2006 Programmable control of nucleation for algorithmic self-assembly
- On Neural Networks with Minimal Vasken Bohossian Jehoshua Bruck
- Whiplash PCR for O(1) Computing Erik Winfree
- Microcellular systems, random walks and wave propagation.
- Multiple Threshold Neural Logic \Lambda Vasken Bohossian Jehoshua Bruck
- Efficient Digital to Analog Encoding * Michael Gibson Jehoshua Bruck
- The Computational Power of Benenson Automata
- Towards Domain-based Sequence Design for DNA Strand Displacement David Yu Zhang1
- SUPPLEMENTAL MATERIALS S1. Gel Methods
- Complexity of Compact Proofreading for Self-Assembled Patterns
- The Synthesis of Cyclic Combinational Circuits Marc D. Riedel
- How Crystals that Sense and Respond to Their Environments Could Evolve
- String Tile Models for DNA Computing by SelfAssembly DNA6 Preliminary Proceedings, May 12, 2000
- Optimal Content Placement For EnRoute Web Caching Anxiao (Andrew) Jiang and Jehoshua Bruck
- Time-Division is Better than Frequency-Division for Periodic Internet Broadcasting
- Registrar's Office 2/03/2010 Page 1
- THURSDAY MAY 13, 2010 COST NO. TOTAL $ Class of 1960 Box Lunch $15
- (626) 395-4652 www.events.caltech.edu 1 caltech presents
- mm-Wave Silicon ICs: Challenges and Opportunities Invited Paper
- Synthetic in vitro transcriptional oscillators Jongmin Kim1,4
- The Prehistory of the Belousov-Zhabotinsky Oscillator A. 1.Winfree
- Synthetic In Vitro Transcriptional Oscillators Supplementary Information
- Remote toehold: Supporting Information Anthony J. Genot, David Yu Zhang, Jonathan Bath, and Andrew J. Turberfield
- Elongational-flow-induced scission of DNA nanotubes in laminar flow Rizal F. Hariadi*
- Dynamic DNA Strand Displacement Circuits David Yu Zhang
- Efficient Turing-Universal Computation with DNA Polymers
- Self-assembly of carbon nanotubes into two-dimensional geometries using DNA
- Control of DNA Strand Displacement Kinetics using Toehold Exchange David Yu Zhang1 and Erik Winfree1
- Placement and orientation of individual DNA shapes on lithographically patterned surfaces
- SUPPLEMENTARY INFORMATION doi: 10.1038/nnano.2009.220
- An information-bearing seed for nucleating algorithmic self-assembly
- arXiv:0806.3537v2[cs.LG]10Jul2008 Statistical Learning of Arbitrary Computable Classifiers
- Programming DNA Tube Circumferences Peng Yin,1,2,3
- DNA as a Universal Substrate for Chemical Kinetics (Extended Abstract)
- A simple DNA gate motif for synthesizing large-scale circuits
- arXiv:0803.1030v3[cs.CC]28Jan2009 Robust Stochastic Chemical Reaction Networks
- Synthesis of crystals with a programmable kinetic barrier to nucleation
- Synthesis of crystals with a programmable kinetic barrier to nucleation
- Reducing Facet Nucleation During Algorithmic Self-Assembly Supporting Information
- 2007 Nature Publishing Group An autonomous polymerization motor
- COMBINING SELF-HEALING AND PROOFREADING IN SELF-ASSEMBLY
- In Vitro Synthetic Transcriptional Networks Jongmin Kim
- NEWS & VIEWS 84 nature nanotechnology | VOL 2 | FEBRUARY 2007 | www.nature.com/naturenanotechnology
- Sturdier DNA Nanotubes via Ligation Patrick O'Neill, Paul W. K. Rothemund, Ashish Kumar, and D. K. Fygenson*,,
- Design of DNA origami Paul W.K. Rothemund
- Two Computational Primitives for Algorithmic Self-Assembly: Copying and Counting Supporting Information
- Algorithmic Self-Assembly of DNA Sierpinski Triangles
- Self-assembly Algorithmic crystals
- DNA Hybridization Catalysts and Catalyst Circuits
- Copyright by SIAM. Unauthorized reproduction of this article is prohibited. SIAM J. COMPUT. c 2009 Society for Industrial and Applied Mathematics
- Algorithmic Self-Assembly of DNA Sierpinski Triangles
- Simulations of Computing by Self-Assembly Erik Winfree
- Computer-Theoretic Abstractions for Molecular Programming
- Combining self-healing and proofreading in self-David Soloveichik Matthew Cook Erik Winfree
- Theoretical Computer Science 344 (2005) 279297 www.elsevier.com/locate/tcs
- CryoEM with T12 March 8, 2005
- Stochastic Switching Circuit Synthesis Daniel Wilhelm
- On the Capacity of Bounded Rank Modulation for Flash Memories
- Codes for Asymmetric Limited-Magnitude Errors with Application to Multi-Level Flash Memories
- Synthesizing Stochasticity in Biochemical Systems University of Minnesota
- Algorithmic Aspects of Cyclic Combinational Circuit Marc D. Riedel and Jehoshua Bruck
- The Synthesis of Cyclic Combinational Circuits Marc D. Riedel
- Diversity Coloring for Distributed Storage in Mobile Networks
- caltechPARADISE:2002.0001 California Institute of Technology
- Simple Evolution of Complex Crystal Species Rebecca Schulman1
- Journal of Biomolecular Structure & Dynamics, ISSN 0739-1102 Conversation 11, Issue #1 (2000) 0-940030-81-0
- presented by the caltech committee on institute programs The WaTson LecTure series featuring prominent Caltech researchers is named for the late EARNEST C. WATSON, who founded
- A Geometric Theorem for Wireless Network Design Optimization
- The ProgramSize Complexity of SelfAssembled Squares [Extended Abstract, Feb. 23, 2000]
- cvsdoc Tue Aug 29 18:18:39 2006 1 CVS Basics (written for the dna group by Joseph Schaeffer)
- The Synthesis Cyclic Combinational Circuits Marc Riedel
- Optimal Constructions of FaultTolerant Multistage Interconnection Networks *
- Ad hoc wireless networks with noisy links Lorna Booth, Jehoshua Bruck, Matthew Cook, Massimo Franceschetti
- Simple Evolution of Complex Crystal Species Rebecca Schulman1
- Self-Replication and Evolution of DNA Crystals Rebecca Schulman and Erik Winfree
- DNA as a universal substrate for chemical kinetics David Soloveichika,1
- FaultTolerant Switched Local Area Networks \Lambda Paul LeMahieu Vasken Bohossian Jehoshua Bruck
- NATURE VOL 394 6 AUGUST 1998 539 Design and selfassembly of
- MultiCluster Interleaving Linear Arrays and Rings Anxiao (Andrew) Jiang Jehoshua Bruck
- String Tile Models for DNA Computing by SelfAssembly
- Interleaving Schemes for Multidimensional Cluster Errors Mario Blaum
- Deterministic Voting in Distributed Systems Using ErrorCorrecting Codes *
- SIAM J. COMPUT. c 2007 Society for Industrial and Applied Mathematics Vol. 36, No. 6, pp. 15441569
- Whiplash PCR for O(1) Computing Erik Winfree
- Algorithmic SelfAssembly of DNA Erik Winfree
- Complexity of Restricted and Unrestricted Models of Molecular Computation \Lambda
- Multi-Cluster Interleaving on Linear Arrays and Rings Anxiao (Andrew) Jiang and Jehoshua Bruck
- COMPUTATION WITH FINITE STOCHASTIC CHEMICAL REACTION DAVID SOLOVEICHIK, MATTHEW COOK, ERIK WINFREE, AND JEHOSHUA BRUCK
- PAUL O. WENNBERG Division of Engineering and Applied Science
- Design and Characterization of Programmable DNA Paul W. K. Rothemund,*,, Axel Ekani-Nkodo,,| Nick Papadakis, Ashish Kumar,
- Molecules Computing: Self-Assembled Nanostructures, Molecular Automata,
- Algebraic Techniques for Constructing Minimal Weight Threshold Functions *
- Ellman's Test: Quantitative Determination of Peptides by Sulfhydryl (SH) Groups. Contributed by David Van Horn, Dept. of Chemistry, UC Berkeley
- THEORY AND EXPERIMENTS IN ALGORITHMIC SELF-ASSEMBLY Paul Wilhelm Karl Rothemund
- On the Computational Power of DNA Annealing and Ligation \Lambda May 25, 1995
- Trading Weight Size for Circuit Depth: LT 2 Circuit for Comparison \Lambda
- Neural network computation by in vitro transcriptional circuits
- Searches for Gauge-Mediated SUSY Breaking Topologies with the L3 Detector at LEP
- June 2011 Page 1 of 3 Human Resources Directory
- The Self-Replication and Evolution of DNA Crystals Rebecca Schulman
- NATURE CHEMISTRY | VOL 3 | AUGUST 2011 | www.nature.com/naturechemistry 1 news & views
- David Yu Zhang (626) 390-2242
- Programmable molecular recognition based on the geometry of DNA nanostructures
- Systematic Error-Correcting Codes for Rank Modulation
- On Codes for Optimal Rebuilding Access Zhiying Wang, Itzhak Tamo, and Jehoshua Bruck
- 9/2/11 10:45 AMMolecular Engineering: Everything in its right place : Nature Methods : Nature Publishing Group Page 1 of 2http://www.nature.com.clsproxy.library.caltech.edu/nmeth/journal/v8/n9/full/nmeth.1687.html
- NATURE CHEMISTRY | www.nature.com/naturechemistry 1 SUPPLEMENTARY INFORMATION
- Theoretical Computer Science ( ) Contents lists available at ScienceDirect
- Parallel and sequential optical computing Damien Woods1
- Simulating Turing machines using switching map systems
- Timing molecular motion and production with a synthetic transcriptional clock
- 2823Development 127, 2823-2842 (2000) Printed in Great Britain The Company of Biologists Limited 2000
- The complexity of small universal Turing machines: a survey
- Timing molecular motion and production with a synthetic transcriptional clock
- A characterisation of NL using membrane systems without charges and dissolution
- Molecular Biology of the Cell Vol. 11, 27432756, August 2000
- Timing molecular motion and production with a synthetic transcriptional clock
- The Astrophysical Journal Letters, 742:L21 (3pp), 2011 December 1 doi:10.1088/2041-8205/742/2/L21 C 2011. The American Astronomical Society. All rights reserved. Printed in the U.S.A.
- Improved Search for Muon-Neutrino to Electron-Neutrino Oscillations in MINOS P. Adamson,7
- Four small universal Turing machines Turlough Neary1
- Theoretical Computer Science 334 (2005) 227258 www.elsevier.com/locate/tcs
- On the computational power of a continuous-space optical model of computation
- Optical computing Damien Woods a
- Stochastic Distributed Protocol for Electric Vehicle Charging with Discrete Charging Rate
- Small weakly universal Turing machines Turlough Neary1
- P-completeness of cellular automaton Rule 110 Turlough Neary1
- Computational complexity of an optical model of computation
- Uniformity: uncovering the frontier of parallelism
- The Programming Language of Chemical Kinetics, and How To Discipline Your DNA Molecules with
- The Computational Complexity of Uniformity and Semi-uniformity in Membrane Systems
- Variable-level Cells for Nonvolatile Memories Anxiao (Andrew) Jiang
- On the Computational Power of a Continuous-Space Optical Model of
- A characterisation of NL using membrane systems without charges and dissolution
- Formal definition of a system of push down Aidan Delaney, Thomas J. Naughton, Damien Woods
- Patterned Cells for Phase Change Memories Anxiao (Andrew) Jiang
- Optical computing and computational complexity
- Implementations of a model of physical sorting Niall Murphy1
- On the time complexity of 2-tag systems and small universal Turing machines
- http://www.cs.nuim.ie Tel: +353 1 7083847 Fax: +353 1 7083848 National University of Ireland, Maynooth
- Analog recurrent neural network simulation and (log 2 n) unordered search with an
- BioComputation using Holliday junctions Niall Murphy 1# Damien Woods 2# Thomas J. Naughton 1
- Lower bounds on the computational power of an optical model of computation
- Stable Sorting Using SpecialPurpose Physical Niall Murphy 1 , Damien Woods 2 , and Thomas J. Naughton 1
- Upper bounds on the computational power of an optical model of computation
- Pcompleteness of cellular automaton Rule 110 # Turlough Neary 1 and Damien Woods 2
- Computational complexity of an optical model of computation
- Small fast universal Turing machines Turlough Neary 1 and Damien Woods 2
- Simulating Turing machines using switching map systems
- Optical computing and computational complexity
- Complexity of continuous space machine Damien Woods 1 and J. Paul Gibson 2
- A small fast universal Turing machine Turlough Neary 1 and Damien Woods 2
- Formal de nition of a system of push down Aidan Delaney, Thomas J. Naughton, Damien Woods
- Simultaneous Satisfaction of Hard and Soft Timetable Constraints for a University Department Using Evolutionary Timetabling
- On the Computational Power of a ContinuousSpace Optical Model of
- A small fast universal Turing machine Turlough Neary1
- Lower bounds on the computational power of an optical model of computation
- Fundamenta Informaticae 91 (2009) 105126 105 DOI 10.3233/FI-2009-0008
- Lower bounds on the computational power of an optical model of computation
- Upper bounds on the computational power of an optical model of computation
- Compiling and Verifying DNA-Based Chemical Reaction Network Implementations
- Membrane dissolution and division in P Damien Woods1
- Separating News from Noise Cells attempting to interpret environmental signals face
- The computational power of membrane systems under tight uniformity conditions
- Active membrane systems without charges and using only symmetric elementary division
- Random Number Selection in Self-Assembly , Jack H. Lutz
- INTRODUCTION During animal development, two types of processes establish
- Remarks on the computational complexity of small universal Turing machines
- On acceptance conditions for membrane systems: characterisations of L and NL
- Time-complexity of multilayered DNA strand displacement circuits
- Intrinsic Universality in Self-Assembly , Jack H. Lutz
- Small fast universal Turing machines Turlough Neary
- Small semi-weakly universal Turing machines Damien Woods1
- Bio-Computation using Holliday junctions Niall Murphy1
- Optical computing Damien Woods a
- Fundamenta Informaticae 91 (2009) 161177 161 DOI 10.3233/FI-2009-0011
- Small fast universal Turing machines Turlough Neary1
- The Morphology of Anomalous Cosmic Rays in the Outer Heliosphere
- Characterization of the interface between the bulk glass forming alloy Zr41Ti14Cu12Ni10Be23 with pure metals
- 1262 J.CHEM. SOC., CHEM. COMMUN., 1993 Asymmetric Hydrogenationin Water by a RhodiumComplex of Sulfonated
- research highlights 712 | VOL.8 NO.9 | SEPTEMBER 2011 | nature methods
- Tight-binding approximation for semi-infinite solids. Application of a transform method and of delta function normalization
- J. CHEM. SOC., CHEM. COMMUN., 1993 735 The Effect of varying Ground-stateAromaticity on the First Molecular Electronic
- X-ray photoelectron spectroscopy investigation of the mixed anion GaSb/lnAs heterointerface
- Program Size and Temperature in Self-Assembly Ho-Lin Chen
- J. Fluid Mech. (1993), vol. 255, pp. 1-10 Copyright 0 1993 Cambridge University Press
- The Multistrand Simulator: Stochastic Simulation of the Kinetics of Multiple Interacting DNA Strands
- Parallelism and Time in Hierarchical Self-Assembly Ho-Lin Chen
- VOLUME 69, NUMBER 21 PHYSICAL REVIEW LETTERS 23 NOVEMBER 1992 Measurement of the Mass of the T Lepton
- Maximum values of gas-dynamic flux densities California Institute of Technology, Pasadena, California 91125
- A Myelin Proteolipid Protein-LacZ Fusion Protein Is Developmentally Regulated and Targeted
