- Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1
- Empirical potentials and functions for protein folding and Sandor Vajda, Manfred Sippl and Jiri Novotny
- Optimal Clustering for Detecting Near-Native Conformations in Protein Docking
- SeniorDesignProje ct Conference
- BIOINFORMATICS Vol. 19 no. 13 2003, pages 16821691
- Identification of Substrate Binding Sites in Enzymes by Computational Solvent Mapping
- Available online at www.sciencedirect.com Convergence and combination of methods in proteinprotein
- Submitted August 2002 Kenneth R. Lutchen, Ph.D.
- Mary KoeppeLuidens Department of Medicine
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Achieving reliability and high accuracy in
- Where does amantadine bind to the influenza virus M2 proton channel?
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Structural insights into recognition of
- Binding Hot Spots and Amantadine Orientation in the Influenza A Virus M2 Proton Channel
- DARS (Decoys As the Reference State) Potentials for Protein-Protein Docking
- Novel Druggable Hot Spots in Avian Influenza Neuraminidase H5N1 Revealed by Computational
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Docking with PIPER and refinement
- SDU: A Semi-Definite programming-based Underestimation method for stochastic global
- Ensemble Modeling of Substrate Binding to Cytochromes P450: Analysis of Catalytic Differences between CYP1A Orthologs,
- Identification of Hot Spots within Druggable Binding Regions by Computational Solvent Mapping of Proteins
- PIPER: An FFT-Based Protein Docking Program with Pairwise Potentials
- PRECISE: a Database of Predicted and Consensus Interaction Sites in Enzymes
- ClusPro: a fully automated algorithm for protein protein docking
- Consensus alignment server for reliable comparative modeling with distant templates
- Proteinprotein docking: is the glass half-full or half-empty?
- CAPRI: A Critical Assessment of PRedicted Interactions Joel Janin,1* Kim Henrick,2
- Successful Discrimination of Protein Interactions Carlos J. Camacho* and David W. Gatchell
- Algorithms for Computational Solvent Mapping of Proteins Tamas Kortvelyesi,1,2
- Dynamical View of the Positions of Key Side Chains in Protein-Protein Recognition
- Kinetics of Desolvation-Mediated ProteinProtein Binding Carlos J. Camacho, S. R. Kimura, Charles DeLisi, and Sandor Vajda
- Continuum Electrostatic Analysis of Preferred Solvation Sites Around Proteins in Solution
- Free Energy Landscapes of Encounter Complexes in Protein-Protein Association
- Protein Science (1996), 5:1272-1281. Cambridge University Press. Printed in the USA. Copyright 0 1996 The Protein Society
- Annu. Rev. Biophys. Biophys. Chern. 1990. 19:69-82 MOLECULAR STRUCTURE AND
- Assessment of CAPRI predictions 2009
- Department of Biomedical Engineering
- Submitted August 2007 John A. White, Ph.D.
- Submitted August 2005 Kenneth R. Lutchen, Ph.D.
- Submitted July 2004 Kenneth R. Lutchen, Ph.D.
- Submitted July 2003 Kenneth R. Lutchen, Ph.D.
- Sample preparation 100200 million molecular clusters
- BOSTON UNIVERSITY COLLEGE OF ENGINEERING
- Engineering Junior Town Meeting
- The Boston University Photonics Center 8 Saint Mary's St., Boston, MA 02215, Tel: (617) 353-8899, Fax: (617) 353-7271
- Semiglobal Simplex Optimization and Its Application to Determining the Preferred Solvation Sites of Proteins
- Clustering of domains of functionally related enzymes in the interaction database PRECISE by the
- Journal of Chromatography B, 715 (1998) 8591 Genetic engineering of streptavidin, a versatile affinity tag
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Discrimination of near-native structures
- Exploring the Binding Sites of the Haloalkane Dehalogenase DhlA from Xanthobacter autotrophicus GJ10
- Rigid body protein docking methods frequently yield false positive structures that have good surface complementarity,
- Molecular Engineering of Streptavidin" TAKESHI SANO, SANDOR VAJDA, GABRIEL 0.REZNIK,
- Predicting oligomeric assemblies: N-mers a primer Stephen R. Comeau a
- Exploring the Binding Site Structure of the PPAR Ligand-Binding Domain by Computational Solvent Mapping
- Anchor residues in proteinprotein interactions Deepa Rajamani*, Spencer Thiel
- BOSTON UNIVERSITY COLLEGE OF ENGINEERING 2010 STARS Program Application
- Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels
- Inverse Problems in Engineering (Publisher: Taylor & Francis)
- Protein docking along smooth association pathways Carlos J. Camacho* and Sandor Vajda
- Peptide Docking Using Dynamic Programming
- Performance of the First Protein Docking Server ClusPro in CAPRI Rounds 35
- Computational mapping identifies the binding sites of organic solvents on proteins
- Course Requirements for BME Students in Biomolecular Pharmacology Training Program
- Proc. Natl. Acad. Sci. USA Vol. 94, pp. 61536158, June 1997
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS ClusPro: Performance in CAPRI rounds 611
- Annual Report Boston University College of Engineering
- BIOINFORMATICS Vol. 20 no. 1 2004, pages 4550
- Scoring Docked Conformations Generated by Rigid-Body Protein-Protein Docking
- Computational Solvent Mapping Reveals the Importance of Local Conformational Changes for Broad Substrate Specificity in Mammalian Cytochromes P450
- he biological sciences have crossed a cultural watershed, driven in large part
- Human Transaldolase and Cross-Reactive Viral Epitopes Identified by Autoantibodies of Multiple Sclerosis Patients1
- ANNUAL REPORT BIOMEDICAL ENGINEERING DEPARTMENT
- Ph.D DISSERTATION PROSPECTUS DEFENSE FORM 1.Candidate
- MEETING REPORT Modeling of Protein Interactions in Genomes
- Post-Prospectus THESIS COMMITTEE MEETING REPORT Name of Student: Meeting number: Date
- M.S. and Ph.D. Thesis Committee Guidelines M.S. Thesis Committee
- Protein Science (1997), 6:197&1984. Cambridge University Press. Printed in theUSA Copyright 0 1997 TheProteinSociety
- Boston University College of Engineering
- BBBMMMEEE AAANNNNNNUUUAAALLL RRREEEPPPOOORRRTTT Submitted August 2001
- Biochemistry 1994, 33, 13977-13988 13977 Effect of Conformational Flexibility and Solvation on Receptor-Ligand Binding
- Protein Science (1996). 5:614-626. Cambridge University Press. Printed in the USA. Copyright 0 1996 TheProteinSociety
- Protein Docking by Exploiting Multi-dimensional Energy Funnels
- Discrimination of Near-Native Protein Structures From Misfolded Models by Empirical Free Energy Functions
- National Institutes of Health Training Program in Quantitative Biology and Physiology Rationale, Mission and Specific Aims of Training Program
- BOSTON UNIVERSITY COLLEGE OF ENGINEERING
- Journal of Biotechnology 128 (2007) 213225 Engineering a novel, stable dimeric streptavidin
- BIOINFORMATICS ORIGINAL PAPER Vol. 25 no. 5 2009, pages 621627
- Domain motion and interdomain hot spots in a multidomain enzyme
- Characterization of Protein-Ligand Interaction Sites Using Experimental and Computational Methods
- BBBMMMEEE AAAnnnnnnuuuaaalll RRReeepppooorrrttt Department of Biomedical
- Computational Screening of Phthalate Monoesters for Binding to Taner Kaya,, Scott C. Mohr, David J. Waxman, and Sandor Vajda*,
- pubs.acs.org/Biochemistry Published on Web 10/26/2009 r 2009 American Chemical Society 11572 Biochemistry 2009, 48, 1157211581
- Annu. Rev. Biophys. Biomol. Struct. 1995. 24:677-700 Copyright 1995 by Annual Reviews Inc. All rights reserved
- Combination of Scoring Functions Improves Discrimination in ProteinProtein Docking
- Optimization in Computational Chemistry and Molecular Biology, pp. 1-2 C. A. Floudas and P. M. Pardalos, Editors
- Journal of Computer-Aided Molecular Design 17: 173186, 2003. 2003 Kluwer Academic Publishers. Printed in the Netherlands.
- Submitted August 2006 Kenneth R. Lutchen, Ph.D.
- BE506 Physical Chemistry of Cell Structure and Machinery short description
- Boston University College of Engineering
- Boston University College of Engineering
- Boston University Biomedical Engineering
- BME Department Graduate Student Handbook
- Boston University College of Engineering Department of Biomedical Engineering
- REGISTRATION FORM OFFICE OF THE UNIVERSITY REGISTRAR
- Systems Physiology Cluster Professional Elective
- Advancing MEDICINE Through TECHNOLOGY
- Department of Biomedical Engineering M.S. Proposal & Thesis Committee
- Boston University Biomedical Engineering
- Boston University Biomedical Engineering
- BME Fall Seminar Series Wednesdays, 4 PM* in ERB 203 (Refreshments at 3:45 pm)
- Mechanical Cluster Required: BE 420 or BE 436
- BME Department Graduate Student Handbook
- TRANSFER CREDIT APPROVAL FORM PART I: STUDENT INFORMATION
- Visiting Companies, Institutions and Laboratories 3M Health Care St. Paul, MN
- Undergraduate Student Handbook 2011/12 College of Engineering TABLE OF CONTENTS
- Nanomedicine: Principles and Applications ENG BE 745 (4 credits), Spring 2011
- M.S. and Ph.D. Thesis Committee Guidelines M.S. Thesis Committee
- BE 492: Biological Measurements II Spring 2012 Professor Andrew C. Jackson, PhD Lecture: Tuesday 2:00-3:00 pm, PHO 206
- Nanomedicine: Principles and Applications ENG BE 745 (4 credits), Spring 2012
- BOSTON UNIVERSITY COLLEGE OF ENGINEERING
- BME Spring Seminar Series Wednesdays, 4 PM in ERB 203 (Refreshments at 3:45 pm)
- BE 527/727, M &W 12-2 pm, Spring 2012 Professor Joyce Y. Wong
- Published: November 17, 2011 r 2011 American Chemical Society 20668 dx.doi.org/10.1021/ja207914y |J. Am. Chem. Soc. 2011, 133, 2066820671
- BE575: Introduction to Neuroengineering Course Schedule: Spring 2012, MW 2-4pm, SCI 115
- Boston University College of Engineering
- Structural conservation of druggable hot spots in proteinprotein interfaces
- BME Department Graduate Student Handbook
- Reversing chemoresistance by small molecule inhibition of the translation initiation complex eIF4F
- Published Ahead of Print 20 April 2011. 2011, 85(13):6381. DOI: 10.1128/JVI.00078-11.J. Virol.
