
- www.sciencemag.org/cgi/content/full/science.1198374/DC1 Supporting Online Material for
- Developing Computational Biology Philip E. Bourne*
- Supplemental Materials Conservation of an RNA Regulatory Map between Drosophila and
- BIOINFORMATICS Vol. 20 no. 10 2004, pages 16031611
- The ASTRAL Compendium in 2004 John-Marc Chandonia1
- BIOINFORMATICS ORIGINAL PAPER Vol. 21 no. 7 2005, pages 975980
- Structural Studies of the Nudix Hydrolase DR1025 From Deinococcus radiodurans and its
- 1371 PROTEIN STRUCTURE INTERPRETATION WITH SCOP 635 gram MULTISUP,32 which performs weighted multiple superposition of
- Vol. 22 no. 5 2006, pages 618620 doi:10.1093/bioinformatics/btk020BIOINFORMATICS APPLICATIONS NOTE
- Pastuszak, A.W. SUPPLEMENTARY DATA
- Protein Engineering vo1.8 no.4 pp.3 19-328, 1995 DNA recognition code of transcription factors
- Outlook GENOME ANALYSIS Errors in genome annotation 0168-9525/99/$ see front matter 1999 Elsevier Science All rights reserved. PII: S0168-9525(99)01706-0132
- Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay
- Measurements of Protein SequenceStructure Correlations Gavin E. Crooks,* Jason Wolfe, and Steven E. Brenner
- Genome Biology 2004, 5:343 commentreviewsreportsdepositedresearchinteractionsinformationrefereedresearch
- Proc. Natl. Acad. Sci. USA Vol. 95, pp. 60736078, May 1998
- Using metabolic databases for
- Update on the Pfam5000 Strategy for Selection of Structural Genomics Targets
- JMB--MS 422 Cust. Ref. No. CAM 502/94 [SGML] J. Mol. Biol. (1995) 247, 536540
- *Corresponding Author: Steven E. Brenner--Department of Molecular and Cell Biology, University of California, Berkeley. Email: brenner@compbio.berkeley.edu
- An SF1 affinity model to identify branch point sequences in human introns
- Biases in Illumina transcriptome sequencing caused by random hexamer priming
- Automated multi-model reconstruction from single-particle electron microscopy data
- Phylogenetic molecular function annotation Barbara E Engelhardt1,1
- Full list of modENCODE consortium participants and affiliations. Caenorhabditiselegans
- Human MutationSPECIAL ARTICLE Planning the Human Variome Project: The Spain Report
- Molecular Cell Genome-wide Analysis of Alternative Pre-mRNA
- MeRNA: a database of metal ion binding sites in RNA structures
- RNAstructuralmotifs:buildingblocks ofamodularbiomolecule
- Target Selection and Deselection at the Berkeley Structural Genomics Center
- Vol. 21 no. 20 2005, pages 38243831 doi:10.1093/bioinformatics/bti627BIOINFORMATICS ORIGINAL PAPER
- 0 0.05 0.1 0.15 0.2 0.25 0.3 0.35 0.4 ErrorsPerQuery(EPQ)
- Implications of Structural Genomics Target Selection Strategies: Pfam5000, Whole Genome, and Random
- The evolving roles of alternative splicing Liana F Lareau1
- SCOP database in 2004: renements integrate structure and sequence family data
- SCOR: Structural Classication of RNA, version 2.0 Makio Tamura1
- BIOINFORMATICS Vol. 19 Suppl. 1 2003, pages i118i121 DOI: 10.1093/bioinformatics/btg1015
- Bootstrapping and Normalization for Enhanced Evaluations of Pairwise Sequence Comparison
- The Bioperl Toolkit: Perl Modules for the Life Sciences
- To derive the most value from structural genomics efforts, projects attempt to maxi-
- FOR THE RECORD Expectations from structural genomics
- # 1998 International Union of Crystallography Acta Crystallographica Section D Printed in Great Britain all rights reserved ISSN 0907-4449 # 1998
- Annu. Rev. Biophys. Biomol. Struct. 1997. 26:597627 Copyright c 1997 by Annual Reviews Inc. All rights reserved
- I:EBS 16060 FEBS Letters 372 (1995) 215-221 Classification of multi-helical DNA-binding domains and application to
- Sequence comparison is a powerful method for learning about the func-
- A Specification for Defining andAnnotating-Regions of Macromolecular Structures
- DOI: 10.1126/science.1198374 , 1787 (2010);330Science
- BIOINFORMATICS ORIGINAL PAPER Vol. 21 no. 19 2005, pages 37043710
- A Generalized Affine Gap Model Significantly Improves Protein Sequence Alignment Accuracy
- WebLogo: A Sequence Logo Generator Gavin E. Crooks,1
- Survey of large protein complexes in D. vulgaris reveals great structural diversity
- ANDY: A general, fault-tolerant tool for database searching on computer clusters
- SCIENTIFIC CORRESPONDENCE Gene duplications in H. influenzae
- Population statistics of protein structures: lessons from structural classifications
- Structural genomics of minimal organisms and protein fold space Sung-Hou Kim1,2,
- ARTICLE doi:10.1038/nature09715 The developmental transcriptome of
- Molecular Cell, Vol. 14, 775786, June 18, 2004, Copyright 2004 by Cell Press Genome-Wide Analysis Reveals an Unexpected
- Three-dimensional motifs from the SCOR, structural classication of RNA database: extruded strands,
- 9trends guide to bioinformatics 0167-7799/98/$ see front matter 1998 Elsevier Science. All rights reserved. More sequences have been putatively
- SI Appendix for Survey of Large Protein Complexes in D. vulgaris
- A method for the alignment of heterogeneous macromolecules from electron microscopy
- A Graphical Model for Predicting Protein Molecular Function Barbara E. Engelhardt bee@cs.berkeley.edu
- http://genomebiology.com/2001/2/12/research/0050.1 commentreviewsreportsdepositedresearchinteractionsinformationrefereedresearch
- doi:10.1261/rna.2343206 2006 12: 533-541; originally published online Feb 16, 2006;RNA
- BIOINFORMATICS ORIGINAL PAPER Vol. 26 no. 9 2010, pages 11761184
- 24|Annals of Improbable Research|July-August 2004 www.improbable.com The Morphology of Steve
- The Impact of Structural Genomics: Expectations and Outcomes Authors: John-Marc Chandonia1,2 and Steven E. Brenner1,2
- Chemistry & Biology, Vol. 9, 767776, July, 2002, 2002 Elsevier Science Ltd. All rights reserved. PII S1074-5521(02)00175-8 CrosstalkSulfotransferases and Sulfatases
- Supplementary Text Annotations status at the beginning of modENCODE
- The explosive growth of genetic sequence information has offered us comprehensive collections of the protein
- Sequences and topology: a decade of genomes Editorial overview
- Advances in Molecr~larBioinforararics S. Sch~tlze-Krenm(Ed.j
- Global analysis of positive and negative pre-mRNA splicing regulators
- Distribution of Protein Folds in the Three Superkingdoms of Life
- Unlocking the secrets of the genome Despite the successes of genomics, little is known about how genetic information produces complex
- PLoS Computational Biology: A New Community Journal
- Genome Biology 2004, 5:R8 commentreviewsreportsdepositedresearchrefereedresearchinteractionsinformation
- Published online 13 November 2007 Nucleic Acids Research, 2008, Vol. 36, Database issue D419D425 doi:10.1093/nar/gkm993
- 1997 Oxford University Press236239 Nucleic Acids Research, 1997, Vol. 25, No. 1 SCOP: a Structural Classification of Proteins