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Cabrera, Javier - Department of Statistics, Rutgers University
STAT563: Applied Regression Analysis Fall 2009 Instructor: Javier Cabrera,
Exploration and Analysis of DNA Microarray and Protein Array Data
Import Export Data in R. scan: Basic function to input data from a text file, scan returns a vector of numbers, strings , or
Multivariate Data Analysis and Data Mining
Cluster Analysis We have a dataset with n observations and we want to group the
Lecture 5: Expression level estimationLecture 5: Expression level estimationLecture 5: Expression level estimationLecture 5: Expression level estimation ReplicationReplicationReplicationReplication
Sales Difference of Orthopedic Equipments Among US States
STAT 588 : DATA MININGSTAT 588 : DATA MININGSTAT 588 : DATA MININGSTAT 588 : DATA MINING Javier CabreraJavier CabreraJavier CabreraJavier Cabrera
Lecture 2: Microarrays Central dogma of molecular biology: The state of a cell at any given time is governed
1. EDA (EXPLORATORY DATA ANALYSIS by J.Tukey). Learn how to explore data and find valuable information, structures and relationships
Lecture 5Lecture 5Lecture 5Lecture 5 Processing microarray data (1)Transform the data into a scale suitable for analysis
Exploration and Analysis of DNA Microarray Data
Pattern discovery and classificationPattern discovery and classificationPattern discovery and classificationPattern discovery and classification Biological pathways.
Pattern Recognition, Class Prediction or Supervised Classification
Regression Analysis of Plastic Explosives Detection
1. EDA (EXPLORATORY DATA ANALYSIS by J.Tukey). Learn how to explore data and find valuable information, structures and relationships
Lecture 3Lecture 3Lecture 3Lecture 3 I. Box Plots and batch comparisons
Week 4 part b. Two way ANOVA ONE-WAY ANOVA
ResamplingResamplingResamplingResampling MethodsMethodsMethodsMethods The BootstrapThe BootstrapThe BootstrapThe Bootstrap
Reject Approve Comp.2>=1.629
Genomics basics -In old times: Hereditary mechanism that carried information from parent to child.
Gene expression An organism's genome is the complete
Lecture 4Lecture 4Lecture 4Lecture 4 Processing the scanned image Processing Steps:Processing Steps:Processing Steps:Processing Steps
Pattern discovery Finding combinations of genes that are involved in some
Nonlinear Nonparametric Function Estimation: y = f(x) +
Immune system response to a viral infection glycoproteins
Lecture 6: Two-group comparative experiments Objective: compare the expression levels of a set of genes across two or
Multivariate Data Analysis and Data Mining
STAT587: INTERPRETATION OF DATA II. Spring 2011 Instructor: Javier Cabrera,
Logistic Regression Analysis of the Occurrence of Diabetes in
16:960:690:02 -#35086 Special Topics: Exploration and Analysis of DNA Microarray and Protein Array Data
Computer vision methods for DNA microarray spotting and quality
