Bj�rnstad, Ottar Nordal - Departments of Entomology & Biology, Pennsylvania State University

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Bj�rnstad, Ottar Nordal - Departments of Entomology & Biology, Pennsylvania State University

doi: 10.1098/rsif.2009.0317 , 727-739 first published online 14 October 200972010J. R. Soc. Interface
SPECIAL FEATURE: REVIEW Allee Effects: Mating and Invasion The role of Allee effects in gypsy moth, Lymantria dispar (L.),
Allee effects and pulsed invasion by the gypsy moth Derek M. Johnson1
Ecological Monographs, 75(2), 2005, pp. 199214 2005 by the Ecological Society of America
Ecology, 91(1), 2010, pp. 106118 2010 by the Ecological Society of America
Journal of Animal Ecology 2005
Landscape geometry and travelling waves in the larch Derek M. Johnson,1
Annu. Rev. Ecol. Evol. Syst. 2004. 35:46790 doi: 10.1146/annurev.ecolsys.34.011802.132516
OIKOS 104: 156164, 2004 Within-population spatial synchrony in mast seeding of North
captures the evolution of a complex adapta-tion on a much finer scale. We used a relaxed
Invasion speed is affected by geographical variation in the strength of Allee effects
POPULATION ECOLOGY Bjrn kland Andrew M. Liebhold
ECOGRAPHY 25: 616625, 2002 Accounting for spatial pattern when modeling organism-
Ecology, 83(11), 2002, pp. 31203129 2002 by the Ecological Society of America
INFECTION AND IMMUNITY, Oct. 2007, p. 49724979 Vol. 75, No. 10 0019-9567/07/$08.00 0 doi:10.1128/IAI.00763-07
Ecology, 85(11), 2004, pp. 31403150 2004 by the Ecological Society of America
**FULL TITLE** ASP Conference Series, Vol. **VOLUME**, **YEAR OF PUBLICATION**
DEPARTMENT OF STATISTICS The Pennsylvania State University
The Determinant of a Hypergeometric Period Matrix and a Generalization of Selberg's
Transmission consequences of coinfection: cytokines writ large?
ORIGINAL ARTICLE Andrew M. Liebhold Derek M. Johnson
Geographical variation in the periodicity of gypsy moth outbreaks Derek M. Johnson, Andrew M. Liebhold and Ottar N. Bjrnstad
Ecological Monographs, 72(2), 2002, pp. 169184 2002 by the Ecological Society of America
Travelling waves and spatial hierarchies in measles epidemics
Identifying the Age Cohort Responsible for Transmission in a Natural Outbreak of Bordetella bronchiseptica
On the Geometry of EM algorithms David R. Hunter
mate Change in Continental Isotopic Records, P. K. Swart, Ed. (American Geophysical Union, Washington,
Ecological Monographs, 72(2), 2002, pp. 185202 2002 by the Ecological Society of America
Curriculum vitae Ottar Nordal Bjrnstad
Transactions of the Royal Society of Tropical Medicine and Hygiene (2006) 100, 867--873 available at www.sciencedirect.com
Clear@, , D HThe model is --eqn 12-14 in Bjornstad et al.
Vaccine 29 (2011) 1116 Contents lists available at ScienceDirect
The Biology of the Vole Clethrionomys rufocanus: Yukibumi Kaneko, Keisuke Nakata, Takashi Saitoh,
The Evolutionary and Epidemiological Dynamics of the Paramyxoviridae
Spatial patterns of the temporal dynamics of three Gadoid species along the
17. METAPOPULATION DYNAMICS OF
and development of statistical methods. Briefly, the statistical model is: f it 1
MARINE ECOLOGY PROGRESS SERIES Mar Ecol Prog Ser
Inference for mixtures of symmetric distributions David R. Hunter
Simplifying biological B. T. GRENFELL1
population fluctuations3 . Arguably, ecolo-
Figure 5. Wavelet time series analysis for yearly LBM outbreaks. a) The normalized time-series. b) Temporally-local wavelet power spectrum (dark red indicates the strongest
A Distributional Approach to Measuring Changes in Economic Inequality Mark S. Handcock Martina Morris
Steadfast with the St. Petersburg Paradox to Quantify Irrational Exuberance
Ecology, 80(2), 1999, pp. 622637 1999 by the Ecological Society of America
It is generally assumed that defence against parasites is costly to maintain, and several
E C O L O G Y / E VO L U T I O N Planting the Seeds
Journal of Animal Ecology 2004
ENTOMOLOGY & BIOLOGY DEPARTMENTS -The Pennsylvania State University ECOLOGICAL DYNAMICS OF POPULATIONS, COMMUNITIES AND DISEASE
Inference with Imputed Conditional Means Joseph L. Schafer and Nathaniel Schenker
Inference in curved exponential family models for networks David R. Hunter, Penn State University
vol. 173, no. 4 the american naturalist april 2009 Evolution of Acute Infections and the
Time is of the essence: exploring a measles outbreak response vaccination
vol. 163, no. 4 the american naturalist april 2004 Spatial Dynamics of Specialist Seed Predators on Synchronized
EMULATING A GRAVITY MODEL TO INFER THE SPATIOTEMPORAL DYNAMICS OF AN INFECTIOUS DISEASE
Long-term Variability in the Length of the Solar Cycle Michael L. Rogers, Mercedes T. Richards
328 http://infection.thelancet.com Vol 6 June 2006 Everyday work-related commutes,
Evolution and emergence of Bordetella in humans [Preprint] Ottar N. Bjrnstad1,3
Relative Distributional Methods Mark S. Handcock, Martina Morris and Annette D. Bernhardt*
Department of Biochemistry and Molecular Biology
BROWN MARMORATED STINK BUG Halyomorpha halys
TOPICS IN U-STATISTICS AND RISK ESTIMATION Qing Wang and Bruce G. Lindsay
Seasonality and comparative dynamics of six childhood infections in pre-vaccination
DEPARTMENT OF STATISTICS The Pennsylvania State University
Designing Computer Experiments: Rotated Factorial Designs
Ignorable dropout in longitudinal studies BY MARIA ELEANOR V. TIPA, SUSAN A. MURPHY
Estimation and inference of R0 of an infectious pathogen by a removal method
Seasonality, cohort-dependence and the development of immunity in a natural
ORIGINAL PAPER Slow spread of the aggressive invader, Microstegium
Imputation of missing covariates under a multivariate linear mixed model
www.sciencemag.org SCIENCE VOL 298 1 NOVEMBER 2002 973 CREDIT:WERNERBALTENSWEILER
MARINE ECOLOGY PROGRESS SERIES Mar Ecol Prog Ser
Goodness of Fit of Social Network Models David R. Hunter, Penn State University
The epidemiology of rubella in Mexico: seasonality, stochasticity and regional variation
Long et al 2010 Age-structured Bordetella transmission R Code 1 S1. R code_Long et al
Chapter 9: Visions for future research in wildlife epidemiology1
Clark and Bjornstad Appendix APPENDIX: GIBBS SAMPLER FOR BAYESIAN STATE-SPACE MODELS
FORUM is intended for new ideas or new ways of interpreting existing information. It FORUM providesa chancefor suggestinghypothesesandfor challengingcurrent thinkingon ecological
POPULATION ECOLOGY Derek M. Johnson Ottar N. Bjrnstad
A DATA-ADAPTIVE APPROACH FOR MODELING PROPENSITY SCORES Yeying Zhu, Debashis Ghosh, Nandita Mitra and Bhramar Mukherjeez
Supplementary Notes: The dynamics of measles in sub-Saharan Africa Authors: Matthew J. Ferrari, Rebecca F. Grais, Nita Bharti, Andrew J. K. Conlan, Ottar
Entomological Notes Department of Entomology
DEPARTMENT OF STATISTICS The Pennsylvania State University
Computing Policy Department of Statistics, Eberly College of Science
Environmental and Ecological Statistics 8, 5370, 2001 Nonparametric spatial covariance
Journal of Applied Ecology 2005
SPATIO-TEMPORAL DISTRIBUTION OF PLASMODIUM FALCIPARUM AND P. VIVAX MALARIA IN THAILAND
Environ Ecol Stat (2008) 15:265277 DOI 10.1007/s10651-007-0059-3
vol. 160, no. 1 the american naturalist july 2002 Snow Tussocks, Chaos, and the Evolution of Mast Seeding
Ecology, 80(4), 1999, pp. 12781288 1999 by the Ecological Society of America
Many migratory birds make large detours to avoid crossing so-called `ecological
Chapter 2: Heterogeneities in macroparasite infections: patterns and processes1
Likelihood Ratio Con dence Bands in Survival Analysis M.M. SANCHEZ and S.A. MURPHY
Research article 3594 TheJournalofClinicalInvestigation http://www.jci.org Volume 115 Number 12 December 2005
DEPARTMENT OF STATISTICS The Pennsylvania State University
The Population Dynamics of the Vole Clethrionomys rufocanus in Hokkaido, Japan
Supplement A. The relationship of the proportion of populations that replaced themselves from year t-1 to year t with the respective population density in year t-1 (top graph)
PLoS Medicine | www.plosmedicine.org 2159 Correspondence
FEATURE SCREENING VIA DISTANCE CORRELATION LEARNING , Wei Zhong
Spatial-Temporal Analysis of Temperature Using Smoothing Spline ANOVA
Raccoon rabies in space and time Andy Dobson*
DEPARTMENT OF STATISTICS The Pennsylvania State University
Biostatistics (2002), 3, 4, pp. 493510 Printed in Great Britain
Incorporating Heterogeneity into Meta-Analysis of Genomic Data Yihan Li, Debashis Ghosh Department of Statistics The Pennsylvania State University
Ecology, 82(2), 2001, pp. 567579 2001 by the Ecological Society of America
Supporting Information Lavine et al. 10.1073/pnas.1014394108
FORUM is intended for new ideas or new ways of interpreting existing information. It provides a chance for suggesting hypotheses and for challenging current thinking on
Dynamics of coastal cod populations: intra-and intercohort density dependence
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 50665071, April 1999
Supplement to Bjornstad et al. (2001) Nature 409:1001-1006 1 Details of the cross-validation for the order
Synchrony, Waves, and Spatial Hierarchies in the Spread of Influenza
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 1543015435, December 1998
SEMIPARAMETRIC LIKELIHOOD RATIO INFERENCE BY S.A. MURPHY1 AND A.W. VAN DER VAART
Peak shift and epidemiology in a seasonal hostnematode system
Dimension Reduction for Multivariate Responses by Projection onto Empirical Directions
GERMAN COCKROACHES Blatella germanica (L.)
vol. 164, no. 2 the american naturalist august 2004 Measles Metapopulation Dynamics: A Gravity Model for
DEPARTMENT OF STATISTICS The Pennsylvania State University
Predicting the local dynamics of epizootic rabies among raccoons in the United States
Penn State is committed to affirmative action, equal opportunity and the diversity of its workforce.
Comparing Two Survival Time Distributions: An Investigation of Several Weight Functions for the
doi: 10.1098/rspb.2009.0175 , 2469-2476 first published online 8 April 20092762009Proc. R. Soc. B
COUNTING AND LOCATING THE SOLUTIONS OF POLYNOMIAL SYSTEMS OF MAXIMUM LIKELIHOOD
Measles on the Edge: Coastal Heterogeneities and Infection Dynamics
OBSERVED INFORMATION IN SEMIPARAMETRIC MODELS
Supplement to: O.N. Bjrnstad & B.T. Grenfell: Noisy
INFERENCE FOR NON-STATIONARY TIME SERIES Zhibiao Zhao, Xiaoye Li, Department of Statistics, The Pennsylvania State University
http://journals.cambridge.org Downloaded: 16 Dec 2008 IP address: 128.118.145.89 Of mice and men: asymmetric interactions between
ORIGINAL ARTICLE Bjrn kland Ottar N. Bjrnstad
Evaluating the relative importance of patch quality and connectivity in a damselfly metapopulation from a one-season survey
The spatial structure of the gene pool of a viviparous population of Poa alpina -
ORIGINAL ARTICLE Patrick C. Tobin Ottar N. Bjrnstad
doi: 10.1098/rsif.2010.0320 , 369-376 first published online 21 July 201082011J. R. Soc. Interface
for four time intervals: Late Pleistocene (before humans arrived in the Americas), Holocene (when
Mapping the Regional Transition to Cyclicity in Clethrionomys rufocanus: Spectral Densities and
A Connection Between Variable Selection and EM-Type Algorithms
www.sciencemag.org/cgi/content/full/1125237/DC1 Supporting Online Material for
MIYADI AWARD Akiko Satake Ottar N. Bjrnstad
The Pennsylvania State University Department of Statistics
Journal of Animal Ecology 2003
Ecology, 80(2), 1999, pp. 638650 1999 by the Ecological Society of America
Journal of Animal Ecology 2001
HOLARCTIC ECOLOGY 14: 234-244. Copenhagen 1991 Changes in forest soils and vegetation in Sene, southern Norway,
The dynamics of measles in sub-Saharan Africa
Ecology, 87(2), 2006, pp. 283290 2006 by the Ecological Society of America
Adjusting for Endogeneity in the AFT Model Muhammad Atiyat (Advisor: Dr. Debashis Ghosh)
MLE IN THE PROPORTIONAL ODDS MODEL BY S.A. MURPHY1, A.J. ROSSINI
Appendix A: Details of the mathematical modeling Our model of the development and effect of immunity is similar to a standard model
cur on length scales far below those that are currently accessible. The most promising
Multivariate Statistical Analyses Demonstrate Unique Host Immune Responses to Single and Dual Lentiviral
A UNIFIED APPROACH TO RANK TESTS FOR MIXED MODELS
Natural immune boosting in pertussis dynamics and the potential for long-term vaccine failure
doi: 10.1098/rspb.2010.0536 , 2775-2782 first published online 28 April 20102772010Proc. R. Soc. B
Canonical functions for dispersal-induced synchrony Ottar N. Bjrnstad1*
Measles hotspots and epidemiological connectivity *, A. DJIBO2
ICES Journal of Marine Science, 57: 330338. 2000 doi:10.1006/jmsc.1999.0638, available online at http://www.idealibrary.com on
that the timescale is correct7 . But it indicates
Figure Suppl 1. Distribution of estimates of relative age-specific force of infection for simulated episodic time series assuming that age specific mixing is strongly assortative
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 51475152, May 1997
Supplementary material for Travelling waves and spatial hierarchies in measles epidemics.
Seasonal Forcing on the Dynamics of Clethrionomys rufocanus: Modeling Geographic
Spider BeetleS American spider beetle, Mezium americanum
Episodic outbreaks bias estimates of age-specific force of infection: a corrected method using measles as an example
SPECIAL FEATURE: ORIGINAL ARTICLE Spatial Population Synchrony Transient synchronization following invasion: revisiting Moran's
Masting and trophic cascades: interplay between rowan trees, apple fruit moth, and their parasitoid in southern Norway
Cycles and synchrony: two historical `experiments' and one experience
Exact Inference with Monotone Incomplete Multivariate Normal Data
The effect of seasonality, density and climate on the population dynamics of Montana deer mice, important
NATURE |VOL 409 |22 FEBRUARY 2001 |www.nature.com 1001 The impactofspecializedenemiesonthe
SPECIAL FEATURE Takehiko Yamanaka Koichi Tanaka
http://rcc.its.psu.edu/hpc Variable Twist Project
A Stochastic Optimization Case Study using ILOG CPLEX Concert Technology: Dual Sourcing Model for Managing Supply Chain Disruptions
Large Scale Parameter Sweep Studies Using Distributed Matlab
Computational Materials System Design Dr. Zi-Kui Liu
http://rcc.its.psu.edu/hpc An Improved Shape Matching Algorithm for Deformable Objects
http://rcc.its.psu.edu/hpc Finite Element Modeling of Constrained Drying Within the
Vaccine 30 (2012) 544551 Contents lists available at SciVerse ScienceDirect
Crystallization of Cellulose Dr. James Kubicki
DOI: 10.1126/science.1204588 , 984 (2011);333Science
IceCube: Detect Ultrahigh Energy Neutrino Emission from Astrophysical Sources
A Performance and Cost Analysis of the Amazon Elastic Compute Cloud (EC2) Cluster Compute Instance
Role of dynamics in tuning fidelity of RNA-dependent RNA polymerase elucidated by molecular dynamics simulation
http://rcc.its.psu.edu/hpc Patient-Specific Modeling of Flatfoot Deformity for
Geoacoustic Uncertainty and Seabed Variability: Sequential Trans-dimensional Inference
A Reduced Representation of an Ionic Liquid for Simulations of Dr. Mark Maroncelli
http://rcc.its.psu.edu/hpc Investigation of Bit Rotation in Conical Bit with ANSYS
http://rcc.its.psu.edu/hpc Functional Abnormalities in Normally-Appearing Athletes Following
Smoking Research Lab: Neurocognitive Processes Contributing to Cigarette Smoking
Atomic-Scale Simulation of Colloidal Nanoparticle Forces and Kristen A. Fichthorn
Pressure Response of Crystalline Indole Dr. Bodhan Schatschneider
Simulating Plasmon Enhanced Molecular Spectroscopy Dr. Lasse Jensen
http://rcc.its.psu.edu/hpc Optimization of a Vortex Finder in a Cyclone Separator using
Understanding external forces acting on cells control lipid membrane structure and dynamics
Supplementary figures for: Short-lived immunity against pertussis, age-specific routes of transmission, and the utility of a teenage booster
Genome Wide Association Studies (GWAS) Dr. Yu Zhang
http://rcc.its.psu.edu/hpc Advanced CFD Models for Next-Generation Combustion Systems
Anionic cluster structure of water: Theoretical Study Dr. Arshad Khan
Booklice,alsocalledpsocids,arenottruelice.Whiletheyresemble lice in size and shape, booklice feed only on fungi or mold. If you
Computational Modeling of Electrolyte/Cathode Interfaces in Proton Exchange Membrane Fuel Cells
www.sciencemag.org/cgi/content/full/333/6045/984/DC1 Supporting Online Material for
Geography, Increasing Returns, and Multinational Production A central question for policy makers is how changes in trade barriers, investment restrictions, and corporate taxation affect economic
http://rcc.its.psu.edu/hpc Simulation of In-Cylinder Processes in Internal Combustion Engines
http://rcc.its.psu.edu/hpc Scheduling a Heterogeneous Learning Workforce
Getting Started with Optimization Modeling at Penn State
A primer for Curve fitting Vikas Argod
http://rcc.its.psu.edu/hpc FE modeling of guided wave focusing in coated pipes
Mechanism of Ion Transport in Solid Polymer Electrolytes Dr. Janna K. Maranas
Effect of substituent group on charge transfer through DNA: Theoretical Study on mechanism and potential applications in
The Effects of Latent Heating on The Extratropical Transition of Typhoon Sinlaku
ORIGINAL ARTICLE Settlement in empty versus occupied habitats: an experimental
http://rcc.its.psu.edu/hpc Guidelines for analyzing curved and skewed bridges and designing
Hindawi Publishing Corporation Interdisciplinary Perspectives on Infectious Diseases
Generation Separation in Simple Structured Life Cycles: Models and 48 Years of Field Data on a Tea Tortrix Moth.
http://rcc.its.psu.edu/hpc A Numerical Investigation on the Interplay Among Geometry, Meshes, and
Simulations of Dynamics in RNA Binding Proteins and their Role in miRNA Processing
FOUR COMMON TICKS OF PENNSYLVANIA
Getting started with Nastran and Patran Patran is the pre and post processor while Nastran is the solver.
Molecular Simulations of Novel Nanoporous Polymers Dr. Coray M. Colina
Getting started with Ansys The tutorial takes you into these packages with a simple mechanics problem of an axial
Interference Effects in Resonance Raman Spectroscopy Dr. Lasse Jensen
Identification of Defect Processes in Amorphous Materials Dr. Blair R. Tuttle
Stability of titanium oxide phases in Kohn-Sham density functional A well known problem in practical Kohn-Sham (KS) density functional theory (DFT) calculations is that it yields the wrong order of
http://rcc.its.psu.edu/hpc Research on Emerging Technology in the Digitally Mediated Design
Optimal Trading with Transaction Costs and Momentum Dr. Timothy Simin
A Survey of Approaches to Dynamic Provisioning Michael Fenn (mfenn@psu.edu),
http://rcc.its.psu.edu/hpc Computational Simulations in Sustainable Building Design
The Cognitive Aging and Neuroimaging (CAN) Lab The Cognitive Aging and Neuroimaging (CAN)Lab investigates the development of both cognitive and neural processes associated
Depth Profiling by Energetic Cluster Bombardment Dr. Barbara Garrison
Molecular Dynamics Simulations of Laser Induced Incandescence Dr. Adri van Duin
ORIGINAL PAPER Coexistence patterns of two invasive thistle species, Carduus
http://rcc.its.psu.edu/hpc Lagrangian Relaxation for Maximum Graph Bisection Problem
Stability of Earth-Mass Planets in the Habitable Zones of Extrasolar Planetary Systems
Gate Voltage Control of Oxygen Diffusion on Graphene Dr. Jorge O. Sofo
Getting started with Abaqus Problem statement
Working with GAMS Vikas Argod
MRI Study on Maple Syrup Urine Disease via the LONI Pipeline With the creation of large image datasets for quantitative disease classification and diagnosis, like the Alzheimer's Disease
http://rcc.its.psu.edu/hpc Displaying 2D and 3D Images of Gas Flows in Interacting Binary
http://rcc.its.psu.edu/hpc Low Elevation Aerial Photogrammetry for 3D Reconstructions of
http://rcc.its.psu.edu/hpc Influence of Temperature on Guided Wave Propagation
Water Dissociation on Aluminum Nanoparticles Dr. Adri van Duin