- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS STRUCTURE NOTE
- The PredictProtein server Burkhard Rost1,2,3,* and Jinfeng Liu1,3,4
- Protein Engineering vol.12 no.2 pp.8594, 1999 Twilight zone of protein sequence alignments
- Predict protein structure through evolution Burkhard Rost
- Nucleic Acids Research, 2007, 113 doi:10.1093/nar/gkm238
- NMPdb: Database of Nuclear Matrix Proteins Sven Mika1,3,
- META-PP: single interface to crucial prediction servers
- Vol. 23 ECCB 2006, pages e13e16 doi:10.1093/bioinformatics/btl303BIOINFORMATICS
- EVA: continuous automatic evaluation of protein structure prediction servers
- Topology prediction for helical transmembrane proteins at 86% accuracy
- LOCnet and LOCtarget: sub-cellular localization for structural genomics targets
- Natively Unstructured Loops Differ from Other Loops
- Predicted protein^protein interaction sites from local sequence information
- Sequence conserved for subcellular localization RAJESH NAIR1,2
- Vol. 22 no. 7 2006, pages 891893 doi:10.1093/bioinformatics/btl032BIOINFORMATICS APPLICATIONS NOTE
- Vol. 23 no. 18 2007, pages 23762384 BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btm349
- Sequence-based prediction of protein domains Jinfeng Liu1,2,3,*
- Mimicking Cellular Sorting Improves Prediction of Subcellular Localization
- CHOP: parsing proteins into structural domains Jinfeng Liu1,2,4
- Automatic prediction of protein function B. Rosta,b,c,
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS STRUCTURE NOTE
- Appendix for: Chen, Kernytsky & Rost
- Analysing Six Types of ProteinProtein Interfaces Yanay Ofran1,2
- BIOINFORMATICS Vol. 18 no. 7 2002
- EVA: Large-Scale Analysis of Secondary Structure Burkhard Rost1* and Volker A. Eyrich1,2
- The genomes of over 60 organisms from all three kingdoms of life are now entirely sequenced. In many respects, the inventory
- UniqueProt: creating representative protein sequence sets
- 2000 European Molecular Biology Organization EMBO Reports vol. 1 | no. 5 | pp 411415 | 2000 411 Finding nuclear localization signals
- COMMUNICATION Protein Folding Rates Estimated from Contact
- Predicting transmembrane beta-barrels in Henry R. Bigelow1,*, Donald S. Petrey2
- CASP6 Assessment of Contact Prediction Osvaldo Gran~ a,1
- Loopy Proteins Appear Conserved in Evolution Jinfeng Liu1,2,3
- EVAcon: a protein contact prediction evaluation Osvaldo Gran~a, Volker A. Eyrich1
- Better Prediction of Sub-Cellular Localization by Combining Evolutionary and Structural Information
- Cataloguing proteins in cell cycle control Kazimierz O. Wrzeszczynski 1
- Static benchmarking of membrane helix predictions Andrew Kernytsky1,* and Burkhard Rost1,2,3
- Vol. 23 ISMB/ECCB 2007, pages i1i4 BIOINFORMATICS doi:10.1093/bioinformatics/btm285
- ProteinProtein Interactions More Conserved within Species than across Species
- Vol. 22 no. 14 2006, pages e402e407 doi:10.1093/bioinformatics/btl258BIOINFORMATICS
- CAFASP2: The Second Critical Assessment of Fully Automated Structure Prediction Methods
- Ways & Means 259 Marrying structure and genomics
- Effective Use of Sequence Correlation and Conservation in Fold Recognition
- research papers Acta Cryst. (2005). D61, 589598 doi:10.1107/S0907444905005147 589
- FOR THE RECORD Solution NMR structure of the 30S ribosomal protein S28E
- Better 1D Predictions by Experts With Machines Burkhard Rost*
- Structure, Vol. 10, 435440, March, 2002, 2002 Elsevier Science Ltd. All rights reserved. PII S0969-2126(02)00731-1 Reliability of Assessment
- Supp. material p. 1 Schlessinger, Liu & Rost Supporting online material
- Liu, Montelione & Rost Supplementary Information Supplement p. 1
- Vol. 23 ISMB/ECCB 2007, pages i347i353 BIOINFORMATICS doi:10.1093/bioinformatics/btm174
- ProteinProtein Interaction Hotspots Carved into Sequences
- Nucleic Acids Research, 2007, 19 doi:10.1093/nar/gkm107
- This article was originally published in a journal published by Elsevier, and the attached copy is provided by Elsevier for the
- Figures p. 1 Schlessinger, Punta & Rost Supporting Online Material
- PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins
- Mika & Rost Supporting online material Appendix p. 1
- Identifying Cysteines and Histidines in Transition-Metal-Binding Sites Using Support
- Epitome: database of structure-inferred antigenic epitopes
- Figures p. 1 Schlessinger & Rost Supplementary material
- DOI: 10.1126/science.1112014 , 1559 (2005);309Science
- DDT Volume 10, Number 21 November 2005 ReviewsDRUGDISCOVERYTODAY:BIOSILICO
- BIOINFORMATICS ORIGINAL PAPER Vol. 21 no. 13 2005, pages 29602968
- Protein Flexibility and Rigidity Predicted From Sequence Avner Schlessinger1,2
- CHOP Proteins Into Structural Domain-Like Fragments Jinfeng Liu1,3,4* and Burkhard Rost1,2,3*
- BIOINFORMATICS Vol. 20 Suppl. 1 2004, pages i241i247
- Improving Fold Recognition Without Folds Dariusz Przybylski1,2
- The PredictProtein server Burkhard Rost1,2,3,
- CAFASP3 in the Spotlight of EVA Volker A. Eyrich,1* Dariusz Przybylski,1,2,4
- Domains, motifs and clusters in the protein universe Jinfeng Liuy
- LOC3D: annotate sub-cellular localization for protein structures
- Neural networks predict protein structure: hype or hit?
- Biophysical Chemistry 100 (2003) 555575 0301-4622/03/$ -see front matter 2002 Elsevier Science B.V. All rights reserved.
- Structure, Vol. 10, 175184, February, 2002, 2002 Elsevier Science Ltd. All rights reserved. PII S0969-2126(02)00700-1 Continuum Secondary Structure
- Applied Bioinformatics 2002:1(1) xx 2002 Open Mind Journals Limited. All rights reserved.
- Transmembrane helix predictions revisited CHIEN PETER CHEN,1
- BIOINFORMATICS Vol. 18 no. 7 2002
- Enzyme Function Less Conserved than Anticipated Burkhard Rost1,2
- Comparing function and structure between entire proteomes
- Review: Protein Secondary Structure Prediction Continues to Rise Burkhard Rost
- Adaptation of Protein Surfaces to Subcellular Location Miguel A. Andrade1
- Protein Structure Prediction in 1D, 2D,
- Immunology Letters 64 (1998) 97107 Role of transmembrane domains in the functions of B-and T-cell
- Refining neural network predictions for helical transmembrane proteins by dynamic programming
- Transmembrane helices predicted at 95% accuracy Burkhard Rost 1
- Number of transmembrane helices Cumulativepercentageofmembraneproteins
- Bigelow et al. & Rost Predicting membrane barrels Supporting online material Supporting online material
- Vol. 21 Suppl. 1 2005, pages i1i2 doi:10.1093/bioinformatics/bti1057
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS STRUCTURE NOTE
- Surface profiles predict sub-cellular localisation Rajesh Nair & Burkhard Rost
- 10.1110/ps.051666705Access the most recent version at doi: 2005 14: 2849-2861Protein Sci.
- Long membrane helices and short loops predicted less accurately
- Automatic Target Selection for Structural Genomics on Jinfeng Liu,1,2,3,4
- DSSPcont: continuous secondary structure assignments for proteins
- PEP: Predictions for Entire Proteomes Phil Carter1,2,*, Jinfeng Liu1,2,3
- EVA: evaluation of protein structure prediction servers
- Simple jury predicts protein secondary structure best Burkhard Rost 1,*
- Burkhard Rost (rost@columbia.edu) 2001-09-17 Rost papers Bioinformatics 1992-1999
- MESSAGE FROM ISCB ISMB/ECCB 2007: The Premier Conference on
- Critical Assessment of Methods of Protein Structure Prediction (CASP)--Round 6
- Protein Fold Recognition by Prediction-based Burkhard Rost1,2
- NORSp: predictions of long regions without regular secondary structure
- CUBIC: Burkhard Rost (rost@columbia.edu) 2007/06/05 CUBIC papers 1999-now
