- Biclustering Algorithms: A Survey Amos Tanay Roded Sharan y Ron Shamir
- Cl. 1, Size=82 Cl. 2, Size=49
- SIAM J. DISCRETE MATH. c 2006 Society for Industrial and Applied Mathematics Vol. 20, No. 3, pp. 727740
- A Fully Dynamic Algorithm for Recognizing and Representing Proper Interval Graphs
- A Chemical Distance Based Test for Positive Darwinian Selection
- Revealing modularity and organization in the yeast molecular network by integrated analysis of highly
- The factor graph network model for biological systems Irit Gat-Viks, Amos Tanay, Daniela Raijman, and Ron Shamir
- Cluster Analysis and its Applications to Gene Expression Data
- Towards Optimally Multiplexed Applications of Universal DNA Tag Systems
- BioMed Central Page 1 of 8
- BioMed Central Page 1 of 12
- INFORMS Journal on Computing Vol. 16, No. 4, Fall 2004, pp. 360370
- Incomplete Directed Perfect Phylogeny I. Pe'er 1 , R. Shamir 1 , and R. Sharan 1
- A Fully Dynamic Algorithm for Modular Decomposition and Recognition of Cographs
- A Polynomial Approximation Algorithm for the Minimum FillIn Problem
- A FULLY DYNAMIC ALGORITHM FOR RECOGNIZING AND REPRESENTING PROPER INTERVAL GRAPHS #
- Improved Algorithms for the Random Cluster Graph Model
- ORIGINAL ARTICLE Parallel induction of ATM-dependent pro-and antiapoptotic signals
- TUESDAY, JANUARY 29, 2008 Herods Forum Hotel Dan Hotel Royal Beach Hotel
- Sorting cancer karyotypes by elementary Michal Ozery-Flato and Ron Shamir
- This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully formatted PDF and full text (HTML) versions will be made available soon.
- In silico identification of transcriptional regulators associated with c-Myc
- Articledoi:10.1006/geno.2002.xxxx, available online at http://www.idealibrary.com on IDEAL INTRODUCTION
- Optimization Problems in Design of Oligonucleotides for
- MONDAY, JANUARY 28, 2008 16:00 -16:30 Opening Ceremony Hall A, Herods Forum
- Gene Expression Signature of Human Cancer Cell Lines Treated with the Ras Inhibitor Salirasib (S-Farnesylthiosalicylic Acid)
- Information and Computation 204 (2006) 275290 www.elsevier.com/locate/ic
- Designing a Multiroute Synthesis Scheme in Combinatorial Chemistry Adi Akavia,
- log(n)) algorithm for sorting by reciprocal translocations
- Constructing logical models of gene regulatory networks by integrating transcription factor-DNA interactions with expression data: an entropy based approach
- A Global View of the Selection Forces in the Evolution of Yeast Cis-Regulation
- Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and
- BioMed Central Page 1 of 15
- Integrative analysis of genome-wide experiments in the context of a large high-throughput data
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 13, Number 2, 2006
- Inaugural meeting of the Israeli Society for Cancer February 17th
- BioMed Central Page 1 of 8
- The Restriction Scaffold Problem Amir Ben-Dor Richard M. Karp Benno Schwikowski Ron Shamir
- 10.1101/gr.5750507Access the most recent version at doi: 2007 17: 358-367; originally published online Jan 31, 2007;Genome Res.
- American Journal of Gastroenterology ISSN 0002-9270 C 2007 by Am. Coll. of Gastroenterology doi: 10.1111/j.1572-0241.2007.01277.x
- Modeling and Analysis of Heterogeneous Regulation in Biological Networks.
- MONDAY, JANUARY 28, 2008 16:00 -16:30 Opening Ceremony Hall A, Herods Forum
- On the frequency of genome rearrangement events in cancer karyotypes Michal Ozery-Flato and Ron Shamir
- www.ajhg.org The American Journal of Human Genetics Volume 81 November 2007 895 A Randomization Test for Controlling Population Stratification
- Nucleic Acids Research, 2009, 114 doi:10.1093/nar/gkn1064
- Haim KAPLAN, Ph.D. CURRICULUM VITAE
- Genome-wide In-silico Identification of Transcriptional Regulators Controlling Cell Cycle in Human Cells
- Publications of Ron Shamir 14 Publications
- A specific RAD51 haplotype increases breast cancer risk in Jewish non-Ashkenazi high-risk women
- GERBIL: Genotype resolution and block identification using likelihood
- BIOINFORMATICS Vol. 19 no. 14 2003, pages 17871799
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 8, Number 4, 2001
- Degenerate Primer Design: Theoretical Analysis and the HYDEN program1 Non-standard
- Curriculum Vitae Yaron Oresntein
- Suppression of survivin expression in glioblastoma cells by the Ras inhibitor farnesylthiosalicylic
- BIOINFORMATICS Vol. 21 Suppl. 1 2005, pages i195i203
- Comprehensive MicroRNA Profiling Reveals a Unique Human Embryonic Stem Cell Signature Dominated by a Single Seed
- BIOINFORMATICS APPLICATIONS NOTE PIVOT: Protein Interactions VisualizatiOn Tool
- A Clustering Algorithm based on Graph Connectivity 0 Erez Hartuv --Ron Shamir k
- A Simpler 1.5Approximation Algorithm for Sorting by Transpositions
- Physical Maps and Interval Sandwich Problems: Bounded Degrees Help
- The maximum subforest problem: Approximation and exact algorithms
- Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals \Lambda
- BIOINFORMATICS DISCOVERY NOTE Vol. 1 no. 1 2001 Computational Expansion of Genetic Networks
- Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals Haim Kaplan \Lambda Ron Shamir y Robert E. Tarjan z
- CLICK: A Clustering Algorithm for Gene Expression Analysis
- Algorithms for Optical Mapping Richard M. Karp \Lambda Ron Shamir y
- Optimizing the BACEnd Strategy for Sequencing the Human Genome
- Large Scale Sequencing By Hybridization Ron Shamir #
- Faster Subtree Isomorphism Ron Shamir Dekel Tsur
- Handling Long Targets and Errors in Sequencing by Hybridization
- A Polynomial Approximation Algorithm for the Minimum FillIn Problem \Lambda
- Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data
- Spectrum Alignment: Ecient Resequencing by Hybridization I. Pe'er and R. Shamir
- BIOINFORMATICS DISCOVERY NOTE Vol. 1 no. 1 2001 Computational Expansion of Genetic Networks
- Tractability of parameterized completion problems on chordal and interval graphs: Minimum Fillin and
- Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identi cation and
- Complexity Classification of Some Edge Modification Problems \Lambda
- Construction of Physical Maps From Oligonucleotide Fingerprints Data Guy Mayraz \Lambda Ron Shamir y
- Algorithmic Approaches to Clustering Gene Expression Data School of Computer Science
- Towards Optimally Multiplexed Applications of Universal Arrays Amir BenDor # Tzvika Hartman + Richard M. Karp # Benno Schwikowski
- Multi-level Modeling and Inference of Transcription Regulation
- REALIZING INTERVAL GRAPHS WITH SIZE AND DISTANCE CONSTRAINTS ITSIK PE'ER AND RON SHAMIR
- Modeling Transcription Programs: Inferring Binding Site Activity and DoseResponse Model Optimization
- Satisfiability problems on intervals and unit intervals \Lambda Itsik Pe'er and Ron Shamir y
- TWO NOTES ON GENOME REARRANGEMENT MICHAL OZERY-FLATO AND RON SHAMIR
- May 11, 2004 9:46 WSPC/INSTRUCTION FILE ipph-jbcb Journal of Bioinformatics and Computational Biology
- Improved Algorithms for the Random Cluster Graph Model #
- Algorithms for Optical Mapping Richard M. Karp \Lambda Ron Shamir y
- On the Complexity of Positional Sequencing by Hybridization A. BenDor \Lambda I. Pe'er y R. Shamir y R. Sharan y
- Cluster Graph Modi cation Problems 1 Ron Shamir a Roded Sharan b;2 Dekel Tsur a
- An Algorithm for Clustering cDNAs for Gene Expression Analysis Erez Hartuv --Armin Schmitt* Jorg Lange* Sebastian MeierEwert* Hans Lehrach*
- Interval Graphs with Side (and Size) Constraints
- An Algorithm Combining Discrete and Continuous Methods for Optical Mapping
- Handling Long Targets and Errors in Sequencing by Hybridization Eran Halperin # Shay Halperin + Tzvika Hartman # Ron Shamir
- Algorithms and Complexity of Sandwich Problems in Graphs
- Construction of Physical Maps From Oligonucleotide Fingerprints Data \Lambda
- Perfect Completion and Deletion in Random Graphs Assaf Natanzon \Lambda Ron Shamir \Lambda y
- Complexity and algorithms for reasoning about time: a graphtheoretic approach
- APPROXIMATION ALGORITHMS FOR THE MEDIAN PROBLEM IN
- Pathwidth, Bandwidth and Completion Problems to Proper Interval Graphs with Small Cliques \Lambda
- Clustering Gene Expression Patterns Amir BenDor \Lambda Ron Shamir y Zohar Yakhini z
- On the Properties of Sequences of Reversals that Sort a Signed Permutation
- Faster Subtree Isomorphism \Lambda Ron Shamir Dekel Tsur
- CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis
- Identifying Blocks and Sub-Populations in Noisy Gad Kimmel 1 , Roded Sharan 2 , and Ron Shamir 1
- Tractability of parameterized completion problems on chordal, strongly chordal and proper interval graphs \Lambda
- Identifying Blocks and Sub-Populations in Noisy Gad Kimmel1
- May 11, 2004 9:46 WSPC/INSTRUCTION FILE ipph-jbcb Journal of Bioinformatics and Computational Biology
- BioMed Central Page 1 of 16
- Committees & officers 2005.doc COMMITTEES 2005
- PrtT-Regulated Proteins Secreted by Aspergillus fumigatus Activate MAPK Signaling in Exposed A549
- A Point Mutation in Translation Initiation Factor eIF2B Leads to Function-and Time-Specific Changes in Brain
- The Raymond and Beverly Sackler Faculty of Exact Sciences School of Computer Science
- Rearrangements in genomes with centromeres part I: translocations
- BIOINFORMATICS Vol. 19 no. 14 2003, pages 17871799
- Discovering Motifs in Ranked Lists of DNA Sequences
- Monday, February 07, 2005 16:00 -16:30 Opening Ceremony Dan Hotel, Hall A
- 2005LANDESBIOSCIENCE.DONOTDISTRIBUTE. [Cell Cycle 4:12, 1788-1797, December 2005]; 2005 Landes Bioscience
- Transcriptional modulation induced by ionizing radiation: p53 remains a central player
- CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data
- ORIGINAL ARTICLE Lack of association of the 3-UTR polymorphism
- From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions
- Maximum Likelihood Resolution of Multi-block Genotypes School of Computer Science
- The Restriction Scaffold Problem Amir Ben-Dor
- An Algorithm for Clustering cDNA Fingerprints Erez Hartuv,* Armin O. Schmitt,,1
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 14, Number 4, 2007
- E2F1 identified by promoter and biochemical analysis as a central target of glioblastoma cell-cycle arrest in response to ras inhibition
- Vitae of Ron Shamir 1 CURRICULUM VITAE
- Modeling and Analysis of Heterogeneous Regulation in Biological Networks
- RESEARCH Open Access Large-scale analysis of chromosomal aberrations
- Haim KAPLAN, Ph.D. LIST OF PUBLICATIONS
- Computational Aspects of DNA Copy Number
- www.ajhg.org The American Journal of Human Genetics Volume 79 September 2006 481 A Fast Method for Computing High-Significance Disease
- Pathway redundancy and protein essentiality revealed in the Saccharomyces cerevisiae interaction networks
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 15, Number 7, 2008
- PRIMA: Academic Transfer Agreement -Page Computer Software License Agreement
- S.C. Sahinalp et al. (Eds.): CPM 2004, LNCS 3109, pp. 1431, 2004. Springer-Verlag Berlin Heidelberg 2004
- This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully formatted PDF and full text (HTML) versions will be made available soon.
- Detecting Highways of Horizontal Gene Transfer MUKUL S. BANSAL,1,3
- JID:JDA AID:373 /FLA [m3G; v 1.51; Prn:21/04/2011; 14:39] P.1 (1-14) Journal of Discrete Algorithms ()
- Typing without calling the allele: a strategy for inferring SNP haplotypes
- SPIKE: a database of highly curated human signaling pathways
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- Momentum reconstruction of particles in the forward muon trigger system of the ATLAS
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- On-line Zone Construction in Arrangements of Lines in the Plane ?
- Analysis and modeling of population dynamics in the visual cortex
- Dynamic DeNovo Prediction of microRNAs Associated with Cell Conditions: a Search Pruned by Expression
- Chaos in neural networks with dynamic Gideon Dror 1 ,
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- On the Complexity of Sparse Exon Assembly Carmel Kent 1;? , Gad M. Landau 1;2; , and Michal Ziv-Ukelson 3;??
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- Machine Learning, 20, 197-243 (1995) 1995 Kluwer Academic Publishers, Boston. Manufactured in The Netherlands.
- Automated Search Tree Generation (2004; Gramm, Guo, Huffner, Niedermeier)
- Monotone and totally monotone Monotone Matrices
- Isolation Concepts for Clique Enumeration: Comparison and Computational
- Parametrisierte Ansatze fur schwere Graphprobleme: Algorithmen und Experimente
- A faster fixed-parameter approach to drawing binary tanglegrams
- Graph Theory 0366-3267 Noga Alon, Michael Krivelevich
- IEEE TRANSACTIONS ON MEDICAL IMAGING 1 An Automated Method for Analysis of Flow
- Computational Genomics School of Computer Science
- Graph Theory 0366-3267 Noga Alon, Michael Krivelevich
- Journal of Graph Algorithms and Applications http://jgaa.info/ vol. 0, no. 0, pp. 000000 (0000)
- Speeding Up HMM Decoding and Training by Exploiting Sequence Repetitions
- Hidden Markov Models Main source: Durbin et al.,
- Is Pinocchio's Nose Long or His Head Small? Learning Shape Distances for Classification
- Tel-Aviv University Raymond and Beverly Sackler
- You are cordially invited to a talk of the Edmond J. Safra Bioinformatics Program Distinguished Speaker Series.
- Second Annual RECOMB Satellite Workshop on Computational Cancer Biology
- On the frequency of genome rearrangement events in cancer karyotypes Michal Ozery-Flato and Ron Shamir
- h lh lPhylogenyPhylogeny Adi AkaviaAdi Akavia
- Proc. 2nd COCOA Enumerating Isolated Cliques
- BIOINFORMATICS Vol. 00 no. 00 2004
- Topics in Combinatorics and Graph Theory: Homework Assignment Number 2 Solutions will be collected in class on Wednesday, April 7, 2010.
- SlimPLS: A Method for Feature Selection in Gene Expression-Based Disease Classification
- Gideon Dror Citizenship: Israel
- TWO NOTES ON GENOME REARRANGEMENT MICHAL OZERY-FLATO AND RON SHAMIR
- Developing Fixed-Parameter Algorithms to Solve Combinatorially Explosive Biological Problems
- Depth-First Search (Ariadne & Co.)
- Gene FindingGene FindingGene FindingGene Finding Lecture notes of Larry Ruzzo, UW.
- Rearrangements in genomes with centromeres part I: translocations
- Algorithm Engineering for Color-Coding with Applications to Signaling Pathway Detection
- SBH Performance on Genomic Sequences 1 Sequencing by Hybridization A Simulation Study of
- Exploiting Structure in Probability Distributions
- Discovering Motifs in Ranked Lists of DNA Eran Eden1*
- Algorithms for analysis of deep sequencing data
- Proc. 5th TAMC, LNCS 4978, pp. 445-456, 2008 Improved Algorithms for Bicluster Editing
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- To appear in Theory of Computing Systems, 2008 Fixed-Parameter Algorithms for
- Closest Pair and Smallest Enclosing Ball
- CALL FOR PAPERS AND ABSTRACTS Second RECOMB Workshop on Computational Cancer Biology
- Tel Aviv University School of Computer Science
- Feedback Arc Set in Bipartite Tournaments is NP-Complete
- Journal of Machine Learning Research 1 (2000) 1-48 Submitted 4/00; Published 10/00 Model Selection: Beyond the Bayesian/Frequentist Divide
- Understanding biological networks with the random walker's perspective
- Module Identification Gene/Protein Modules
- Tel Aviv University School of Computer Science
- Discrete Applied Mathematics, to appear, 2008 Closest 4-Leaf Power is Fixed-Parameter
- Almost k-wise vs. k-wise independent permutations, and uniformity for general group actions
- LETTER Communicated by James Theiler Feature Selection via Coalitional Game Theory
- RS&A 2007 Plenary Talks Local consistency in direct products
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- Suffix TreesSuffix Trees Description follows Dan Gusfield's book "Algorithms
- April 3, 2007 16:42 World Scientific Review Volume -9in x 6in fptcluster Fixed-Parameter Algorithms for
- BIOINFORMATICS Vol. 00 no. 00 2004
- Journal of Machine Learning Research 11 (2009) xxx-xxx Submitted 02/09; Published 06/09 Hash Kernels for Structured Data
- Tel Aviv University School of Computer Science
- CG, Fall 2011-12, Ron Shamir & Roded Sharan Stochastic Context
- Topics in Combinatorics and Graph Theory: Homework Assignment Number 3 Solutions will be collected in class on Wednesday, May 5, 2010.
- Improved Fixed-Parameter Algorithms for Two Feedback Set Problems
- Exploiting Bounded Signal Flow for Graph Orientation Based on CauseEffect Pairs
- :mRNA() () U2OS.-DNA . . " -'42.
- Fixed-Parameter Tractability Results for Feedback Set Problems in Tournaments6
- Diplomarbeit Graph Modification Problems
- Proc. 6th WEA, Vol. 4525 in LNCS, pp. 297310, Springer, 2007 Optimal Edge Deletions for
- CG Ron Shamir Multiple Sequence
- This article was published in an Elsevier journal. The attached copy is furnished to the author for non-commercial research and
- Dynamic Proximity of Spatiotemporal Sequences School of Physics and Astronomy
- Complexity and Exact Algorithms for Vertex Multicut in Interval and Bounded Treewidth
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- log(n)) algorithm for sorting by reciprocal translocations
- manuscript number 3033 Facial Attractiveness: Beauty and the Machine
- SIAM J. DISC. MATH. Vol. 6, No. 3, pp. 477-490, August 1993
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- A Humanlike Predictor of Facial Attractiveness
- Approximate Labelled Subtree Homeomorphism Ron Y. Pinter1,
- Data Reduction and Exact Algorithms for Clique Eberhard-Karls-Universitat Tubingen
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- Computational Genomics School of Computer Science
- Extending the Tractability Border for Closest Leaf Powers Michael Dom Jiong Guo Falk Huffner Rolf Niedermeier
- Proc. 8th LATIN, 2008 Fixed-Parameter Algorithms for
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- Computational Genomics School of Computer Science
- Elsevier Editorial System(tm) for Pervasive and Mobile Computing Manuscript Draft
- An O(nlog2n) Time, O(n) Space Algorithm for
- Machine Learning, 29, 131163 (1997) c 1997 Kluwer Academic Publishers. Manufactured in The Netherlands.
- CG Ron Shamir, 2011 Pairwise Alignment
- Algorithms and Experiments for Parameterized Approaches to
- BIOINFORMATICS Vol. 24 ECCB 2008, pages i139i145
- Re-Use Dynamic Programming for Sequence Alignment: An Algorithmic Toolkit
- Exploiting bounded signal flow for graph orientation based on causeeffect pairs
- Data Reduction, Exact, and Heuristic Algorithms for Clique Cover Falk Huffner
- A Structural View on Parameterizing Problems: Distance from Triviality
- Topics in Combinatorics and Graph Theory: Homework Assignment Number 4 Solutions will be collected in class on Wednesday, May 26, 2010.
- Compression-Based Fixed-Parameter Algorithms for Feedback Vertex Set
- Sorting by translocations via reversals theory Michal Ozery-Flato and Ron Shamir
- Topology-Free Querying of Protein Interaction Sharon Bruckner1
- Proc. 13th COCOON 2007, LNCS 4598, pp. 140-150, 2007 Isolation Concepts
- Studienarbeit Finding Optimal Solutions to Atomix
- 922 The American Journal of Human Genetics Volume 78 June 2006 www.ajhg.org Online System for Faster Multipoint Linkage Analysis via Parallel Execution
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- Graph Theory 0366-3267 Noga Alon, Michael Krivelevich
- Algorithms for Compact Letter Displays: Comparison and Evaluation
- Seeded Tree Alignment and Planar Tanglegram Layout Antoni Lozano1
- Hash Kernels Qinfeng Shi, James Petterson
- Tel Aviv University School of Computer Science
- CG 08 Ron Shamir CG, Fall 2011-12
- SECOND RECOMB SATELLITE WORKSHOP ON COMPUTATIONAL CANCER BIOLOGY THURSDAY 24.JUNE.2010
- Tiefensuche (Ariadne und Co.)
- Error Compensation in Leaf Root Problems Michael Dom, Jiong Guo, Falk Huffner, and Rolf Niedermeier
- The chromatic number of random Cayley graphs We consider the typical behaviour of the chromatic number of a random Cayley graph of a given
- Computational Ron Shamir & Roded Sharan
- Automated Generation of Search Tree Algorithms for Hard Graph Modification Problems
- Assessing the number of ancestral alternatively spliced exons in the human genome
- arXiv:physics/0402070v116Feb2004 TAUP 2764-04
- Error Compensation in Leaf Power Problems Michael Dom
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- March 6, 2007 Preparing your scribe
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- Topics in Combinatorics and Graph Theory: Homework Assignment Number 1 Solutions will be collected in class on Wednesday, March 17, 2010.
- Algorithm Engineering for Optimal Graph Bipartization