Keeling, Patrick - Department of Botany, University of British Columbia

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Keeling, Patrick - Department of Botany, University of British Columbia

Mol. Biol. Evol. 16(9):13081313. 1999 1999 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
RAPID COMMUNICATIONS This section was established to reduce the lead time for the pub-
Phylogeny of gregarines (Apicomplexa) as inferred from small-subunit rDNA and b-tubulin
Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic
Characterisation of a Non-canonical Genetic Code in the Oxymonad Streblomastix strix
Author's personal copy Comparative profiling of overlapping transcription in the compacted
J. Eukaryot. Microbiol., 48(2), 2001 pp. 147160 2001 by the Society of Protozoologists
Splicing and Transcription Differ between Spore and Intracellular Life Stages in the Parasitic Microsporidia
J. Parasitol., 89(6), 2003, pp. 11911205 American Society of Parasitologists 2003
PLASMID 35, 141144 (1996) ARTICLE NO. 0016
Lateral Gene Transfer of a Multigene Region from Cyanobacteria to Dinoflagellates Resulting in a Novel Plastid-Targeted Fusion Protein
The Mitochondrial Genome of the Entomoparasitic Green Alga Helicosporidium
A Tertiary Plastid Uses Genes from Two Endosymbionts Nicola J. Patron, Ross F. Waller and Patrick J. Keeling*
Mol Genet Genomics (2008) 280:565574 DOI 10.1007/s00438-008-0387-5
J. Eukaryot. Microbiol., 51(2), 2004 pp. 207213 2004 by the Society of Protozoologists
Who is Oxyrrhis marina? Morphological and phylogenetic studies on an unusual
DNA BARCODING OF CHLORARACHNIOPHYTES USING NUCLEOMORPH ITS SEQUENCES1
The Reduced Genome of the Parasitic Microsporidian Enterocytozoon bieneusi Lacks Genes for Core
Five Questions about Microsporidia Patrick Keeling*
Available online at www.sciencedirect.com Functional and ecological impacts of horizontal gene transfer
Ineffectivedisinfectionhassubstantialcon-sequences. Blood culture contamination after
Proposals to amend the CodeTAXON 58 (2) May 2009: 658672 (048051) Proposals to exclude the phylum Microsporidia from the Code
Molecular Phylogeny and Description of the Novel Katablepharid Roombia truncata gen. et sp. nov., and
The Inadequacy of Morphology for Species and Genus Delineation in Microbial Eukaryotes: An Example from
a-and b-Tubulin Phylogenies Support a Close Relationship Between the Microsporidia Brachiola algerae and Antonospora locustae
BioMed Central Page 1 of 9
(fMRI) were shown to correlate with attentional demands during a
they have attracted interest from industry. Indeed, one company, SupraPolix, produces
Environmental PCR survey to determine the distribution of a non-canonical genetic code in
Analysis of the b-Tubulin Genes from Enterocytozoon bieneusi Isolates from a Human and Rhesus Macaque
Mitochondrial Genome of a Tertiary Endosymbiont Retains Genes for Electron Transport Proteins
Morphology and Phylogenetic Position of Eucomonympha imla (Parabasalia: Hypermastigida)
Protist, Vol. ], ]]]--]]], ]] ]]]] http://www.elsevier.de/protis
Alveolate and chlorophycean mitochondrial cox2 genes split twice independently
Nucleus-to-Nucleus Gene Transfer and Protein Retargeting into a Remnant Cytoplasm of Cryptophytes and Diatoms
Microsporidian mitosomes retain elements of the general mitochondrial targeting system
Complete nucleotide sequence of the chlorarachniophyte nucleomorph
BioMed Central Page 1 of 10
EUKARYOTIC CELL, Jan. 2006, p. 148154 Vol. 5, No. 1 1535-9778/06/$08.00 0 doi:10.1128/EC.5.1.148154.2006
On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes
EUKARYOTIC CELL, Oct. 2004, p. 11981205 Vol. 3, No. 5 1535-9778/04/$08.00 0 DOI: 10.1128/EC.3.5.11981205.2004
Lateral gene transfer and the complex distribution of insertions in eukaryotic enolase
Lateral Transfer and Recompartmentalization of Calvin Cycle Enzymes of Plants and Algae
J. Eukaryot. Microbiol., 51(3), 2004 pp. 291300 2004 by the Society of Protozoologists
Polymorphic Insertions and Deletions in Parabasalian Enolase Genes Patrick J. Keeling
Molecular phylogenies of Parabasalia inferred from four protein genes and comparison with rRNA trees
Nucleus-Encoded, Plastid-Targeted Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) Indicates a Single Origin for
Cryptic Organelles in Parasitic Protists and Fungi
Congruent evidence from a-tubulin and b-tubulin gene phylogenies for a zygomycete origin of microsporidia
J. Eukaryot. Microbiol., 49(6), 2002 pp. 498504 2002 by the Society of Protozoologists
Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches
Molecular phylogenetic position of Trichomitopsis termopsidis (Parabasalia) and
Annu. Rev. Microbiol. 2002. 56:93116 doi: 10.1146/annurev.micro.56.012302.160854
Molecular & Biochemical Parasitology 117 (2001) 201209 Alpha and beta subunits of pyruvate dehydrogenase E1 from the
Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase
Mol. Biol. Evol. 17(11):17691773. 2000 2000 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
the presence of recombinant isoforms, and sometimes acidic bands as well, depending
Mol. Biol. Evol. 17(1):2331. 2000 2000 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
1999 Macmillan Magazines Ltd Does global warming
Evolutionary Relationship Between Translation Initiation Factor eIF-2 and Selenocysteine-Specific Elongation Factor SELB: Change of Function in
A kingdom's progress: Archezoa and the
Point Counter Point UAR Codons for Glutamine
The EMBO Journal vol.15 no.9 pp.2285-2290, 1996 A non-canonical genetic code in an early diverging
Alpha-Tubulin in Early-Diverging Eukaryotes 1305 -. 1990. Phylum Microsporidia. Pp. 53-72 in L. MAR-
Mol. Biol. Evol. 17(11):17311738. 2000 2000 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
Evolution of Ultrasmall Spliceosomal Introns in Highly Reduced Nuclear Claudio H. Slamovits and Patrick J. Keeling
BioMed Central Page 1 of 12
Genome Biology 2009, 10:R106 Open Access2009Corradiet al.Volume 10, Issue 10, Article R106Research
Invited review Protein targeting in parasites with cryptic mitochondria
BioMed Central Page 1 of 9
Class II Photolyase in a Microsporidian Intracellular Parasite
Protist, Vol. ], ]]]--]]], ]] ]]]] http://www.elsevier.de/protis
J. Eukaryot. Microbiol., 50(5), 2003 pp. 334340 2003 by the Society of Protozoologists
www.elsevier.de/ejop European Journal of
A high frequency of overlapping gene expression in compacted eukaryotic genomes
An ADP/ATP-Specific Mitochondrial Carrier Protein in the Microsporidian Antonospora locustae
Research Focus Ostreococcus tauri: seeing through the genes to the
Microsporidian Mitochondrial Proteins: Expression in Antonospora locustae Spores and Identification of Genes Coding for Two Further Proteins
RESEARCH ARTICLES The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella
Distinct Localization Patterns of Two Putative Mitochondrial Proteins in the Microsporidian Encephalitozoon cuniculi
Distribution and Phylogeny of EFL and EF-1a in Euglenozoa Suggest Ancestral Co-Occurrence Followed
and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oxfordjournals.org The Author 2010. Published by Oxford University Press on behalf of the Society for Molecular Biology
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
Characterization of a Divergent Sec61 Gene in Microsporidia
Developmental Cell Figure 1. Pitx1 Expression Differences be-
Environmental Barcoding Reveals Massive Dinoflagellate Diversity in Marine Environments
Widespread and Ancient Distribution of a Noncanonical Genetic Code in Diplomonads
A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids
A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional
Mol. Biol. Evol. 18(3):418426. 2001 2001 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
An introduction to the special issue: Oxyrrhis marina, a model organism?
Current Biology Vol 18 No 13 a boom in a wild population, although
J. Eukaryot. Microbiol., 49(1), 2002 pp. 3037 2002 by the Society of Protozoologists
12 NOVEMBER 2010 VOL 330 SCIENCE www.sciencemag.org920 PERSPECTIVES
Chromalveolates and the Evolution of Plastids by Secondary Endosymbiosis1 PATRICK J. KEELING
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 12701275, February 1997
Microsporidia: a journey through radical taxonomical Nicolas CORRADI, Patrick J. KEELING*
BioMed Central Page 1 of 8
The Distribution of Elongation Factor-1 Alpha (EF-1a), Elongation Factor-Like (EFL), and a Non-Canonical Genetic Code in the Ulvophyceae: Discrete Genetic
EUKARYOTIC CELL, Oct. 2004, p. 11691175 Vol. 3, No. 5 1535-9778/04/$08.00 0 DOI: 10.1128/EC.3.5.11691175.2004
Make your own van Leeuwenhoek microscope. By Patrick Keeling
Protist, Vol. 156, 181--190, August 2005 http://www.elsevier.de/protis
Protist, Vol. 152, 193201, September 2001 Urban & Fischer Verlag http://www.urbanfischer.de/journals/protist
Role of Horizontal Gene Transfer in the Evolution of Photosynthetic Eukaryotes and Their Plastids
American Journal of Botany 91(10): 14811493. 2004. DIVERSITY AND EVOLUTIONARY HISTORY OF PLASTIDS
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 1235212357, October 1998
The Highly Reduced and Fragmented Mitochondrial Genome of the Early-branching Dinoflagellate Oxyrrhis
J. Eukaryot. Microbiol., 51(6), 2004 pp. 651659 2004 by the Society of Protozoologists
Protist, Vol. 162, 115130, January 2011 http://www.elsevier.de/protis
The RAB Family GTPase Rab1A from Plasmodium falciparum Defines a Unique Paralog Shared by Chromalveolates and Rhizaria
Plant domestication, a unique opportunity to identify the genetic basis of adaptation
Horizontal gene transfer (HGT), also known as lateral gene transfer, refers to the movement of genetic infor-
Plastid-Derived Genes in the Nonphotosynthetic Alveolate Oxyrrhis marina Claudio H. Slamovits and Patrick J. Keeling
A Transcriptional Fusion of Genes Encoding Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) and Enolase in Dinoflagellates
Plastid-derived Type II fatty acid biosynthetic enzymes in chromists , James T. Harper, Patrick J. Keeling*
Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa
Nucleus-Encoded Periplastid-Targeted EFL in Chlorarachniophytes Gillian H. Gile and Patrick J. Keeling
Evolution of the sex-Related Locus and Genomic Features Shared in Microsporidia and Fungi
Protist, Vol. 157, 205--212, April 2006 http://www.elsevier.de/protis
Contributions of Oxyrrhis marina to molecular biology, genomics and
J. Phycol. 39, 368378 (2003) LESSARDIA ELONGATA GEN. ET SP. NOV. (DINOFLAGELLATA, PERIDINIALES,
PROTIST NEWS 1434-4610/04/155/01-003 $ 30.00/0
Morphostasis in alveolate evolution Brian S. Leander and Patrick J. Keeling
doi: 10.1098/rstb.2009.0103 , 729-7483652010Phil. Trans. R. Soc. B
Evidence That Plant-Like Genes in Chlamydia Species Reflect an Ancestral Relationship
and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oxfordjournals.org The Author 2010. Published by Oxford University Press on behalf of the Society for Molecular Biology
Patterns of Genome Evolution among the Microsporidian Parasites Encephalitozoon cuniculi, Antonospora
EUKARYOTIC CELL, Dec. 2004, p. 13631369 Vol. 3, No. 6 1535-9778/04/$08.00 0 DOI: 10.1128/EC.3.6.13631369.2004
Surface morphology of the marine parasite Haplozoon axiothellae Siebert (Dinoflagellata)
Protist, Vol. 159, 209--221, April 2008 http://www.elsevier.de/protis
Characterization of Periplastidal CompartmentTargeting Signals in Chlorarachniophytes
Mol. Biol. Evol. 18(8):15511557. 2001 2001 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038
The Complete Plastid Genomes of the Two `Dinotoms' Durinskia baltica and Kryptoperidinium foliaceum
RESEARCH ARTICLE Open Access Evolution of Rhizaria: new insights from
Genomic Survey of the Non-Cultivatable Opportunistic Human Pathogen, Enterocytozoon bieneusi
BioMed Central Page 1 of 8
Comment on "A Green Algal Apicoplast Ancestor"
RESEARCH ARTICLE Open Access Complex phylogenetic distribution of a non-
BioMed Central Page 1 of 11
Causes and effects of nuclear genome reduction Patrick J Keeling and Claudio H Slamovits
Nuclear Genome Sequence Survey of the Dinoflagellate Heterocapsa triquetra MICHELLE McEWAN, RAHEEL HUMAYUN, CLAUDIO H. SLAMOVITS and PATRICK J. KEELING
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Cascades of convergent evolution: The corresponding evolutionary histories of euglenozoans
arasites are well known for stripping themselves down to the bare essentials,
COMMON EVOLUTIONARY ORIGIN OF STARCH BIOSYNTHETIC ENZYMES IN GREEN AND RED ALGAE1
EUKARYOTIC CELL, Oct. 2003, p. 10691075 Vol. 2, No. 5 1535-9778/03/$08.00 0 DOI: 10.1128/EC.2.5.10691075.2003
REVIEW ARTICLE Comparative genomics of microsporidia
results of Parigi et al., the laboratory tech-niques they describe could pave the way
A Broad Distribution of the Alternative Oxidase in Microsporidian Parasites
Patterns that Define the Four Domains Conserved in Known and Novel Isoforms of the Protein Import
Morphology, Phylogeny, and Diversity of Trichonympha (Parabasalia: Hypermastigida) of the Wood-Feeding Cockroach Cryptocercus punctulatus
Dinoflagellate Nuclear SSU rRNA Phylogeny Suggests Multiple Plastid Losses and Replacements
Protist, Vol. 161, 122132, January 2010 http://www.elsevier.de/protis
EARLY EVOLUTIONARY HISTORY OF DINOFLAGELLATES AND APICOMPLEXANS (ALVEOLATA) AS INFERRED FROM HSP90 AND ACTIN PHYLOGENIES1
he microsporidia, or phy-lum Microspora, were
Endosymbiosis: Bacteria Sharing the Load A nested set of bacterial endosymbionts within mealybug cells collectively
The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of
Morphological Diversity between Culture Strains of a Chlorarachniophyte, Lotharella globosa
Critical Review How a Neutral Evolutionary Ratchet Can Build Cellular Complexity
Nucleus-and nucleomorph-targeted histone proteins in a chlorarachniophyte algammi_7643 1439..1449
Identification of Plant-like Galactolipids in Chromera velia, a Photosynthetic Relative of Malaria Parasites*S
Insights & Perspectives Comment on ``Does constructive neutral