- Toward Intelligent Drawing Constraints Ronald W. Ferguson, Neil Cutshaw, and Huzaifa Zafar
- Using Polynomial Approximations to Discover Qualitative Models Reha K. Gerceker
- To appear, 8th Int'l Conf. on Intelligent Systems for Molecular Biology, August, 2000, San Diego, CA. Reducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling
- Preprint of paper in Journal of Computational Biology, 7:537558, 2000. The NOESY Jigsaw: Automated Protein Secondary
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- Dissolved oxygen in the River Mesta (Bulgaria): a case study for qualitative modelling of sustainable development
- Intelligent Simulation Tools for Mining Large Scienti c Data Sets 1 Intelligent Simulation Tools for Mining
- Network Dynamics and Simulation Science Laboratory Synthetic Data for Data Mining to Support
- Abstract --Real time traffic incident detection is critical for increasing safety and mobility on freeways. There have been
- This is a preprint of an article accepted for publication in Proteins, copyright 2005. Functional Evolution within a Protein Superfamily
- Proc. IJCAI 2003. Copyright 2003, IJCAI (www.ijcai.org). Gaussian Process Models of Spatial Aggregation Algorithms
- Preprint to appear in RECOMB, 2009. Protein Fragment Swapping: A Method for
- Preprint; published in Proc. of the IEEE, 91:40{63, 2003. Physics-based Encapsulation in Embedded Software
- Proc. of AAAI96 1 Spatial Aggregation: Language and Applications \Lambda
- Proc. 11th International Workshop on Qualitative Reasoning, Cortona, Italy, 1997 1 Spatial Aggregation
- Dynamics-Informed Data Assimilation in a Qualitative Fluids Model Natalie Ross and Elizabeth Bradley
- Proc. 17th Int'l Workshop on Qualitative Reasoning, pp. 2330, 2003. Active Data Mining of Correspondence
- BIOINFORMATICS To appear, 4th European Conference
- Statistical Applications in Genetics and Molecular Biology
- BIOINFORMATICS To appear, ISMB, 2008 Contact Replacement for NMR Resonance Assignment
- Qualitative Analysis of Distributed Physical Systems with Applications to Control Synthesis \Lambda
- Representing SN1 Reaction Mechanism Using the Qualitative Process Theory
- Efficient Learning of Qualitative Descriptions for Sketch Recognition Andrew Lovett Morteza Dehghani Kenneth Forbus
- Using Qualitative Reasoning in Learning Strategy Games: A Preliminary Report
- Preprint, to appear in Proc. RECOMB-11. Optimization of Combinatorial Mutagenesis
- MODELING AND INFERENCE OF SEQUENCE-STRUCTURE SPECIFICITY Hetunandan Kamisetty1
- OPTIMIZING BAYES ERROR FOR PROTEIN STRUCTURE MODEL SELECTION BY STABILITY MUTAGENESIS
- Preprint, to appear in IEEE BIBE, 2007. A Hierarchical Grow-and-Match Algorithm
- Preprint to appear in J. Computational Biology, 2007. Hypergraph Model of Multi-residue Interactions in
- Preprint to appear in Protein Science, 2007. A Complete Algorithm to Resolve Ambiguity
- Preprint, to appear in Proteins, 2006. Structure Determination of Symmetric Homo-oligomers
- Preprint to appear in Proteins, 2006. Site-Directed Combinatorial Construction of Chimaeric Genes
- Proc. Workshop on Algorithmic Foundations of Robotics (WAFR), 2006. Extended Abstract: Structure Determination of
- Preprint, from ACM SigKDD Explorations, 8:8082, 2006. Spatial Data Mining to Support Pandemic Preparedness
- Graphical Models of Residue Coupling in Protein Families John Thomas
- Proc. 18th Int'l Workshop on Qualitative Reasoning, 2004. Gaussian Processes for Active Data Mining of Spatial Aggregates
- Preprint; accepted for AI Magazine, 2004. Qualitative Spatial Reasoning
- Influence-Based Model Decomposition For Reasoning About Spatially Distributed
- Physical Geometric Algorithms for Structural Molecular Biology Chris Bailey-Kellogg John J. Kelley, III Ryan Lilien Bruce Randall Donald
- Mining and Visualizing Spatial Interaction Patterns for Pandemic Response Diansheng Guo
- Process Driven Spatial and Network Aggregation for Pandemic Response Robert Savell and Wayne Chung
- Network Dynamics and Simulation Science Laboratory Interaction Based Computer Modeling for
- Qualitative Reasoning About Small-Scale Turbulence in an Operational Setting Jennifer Abernethy1,2
- Modeling when connections are the problem Johan de Kleer
- Reasoning about Dynamic Systems and Bifurcations Juan J. Flores
- A Qualitative Reasoning System for Behaviours in Interactive Systems Simon Hartley and Marc Cavazza
- Discriminating qualitative model generation from classified data A. Subias, L. Trav-Massuys1
- The Danube Delta Biosphere Reserve: a Case Study for Qualitative Modeling of Sustainable Development
- Combining Qualitative Reasoning and Balanced Scorecard to model future behavior of a company
- The geometry of time-optimal trajectories for an omni-directional robot Paritosh A. Kavathekar and Devin J. Balkcom
- The Riacho Fundo water basin: a case study for qualitative modelling sustainable development
- Spatiotemporal Transition to Conduction Block in Canine Ventricle
- 20th International Workshop on Qualitative Reasoning Hanover, New Hampshire July 10-12, 2006
- CHARACTERIZING THE SPACE OF INTERATOMIC DISTANCE DISTRIBUTION FUNCTIONS CONSISTENT WITH SOLUTION SCATTERING DATA
- Mining Spatial Trends by a Colony of Cooperative Ant Agents Ashkan Zarnani
- Towards a Structured Approach to Qualitative Modelling Bert Bredeweg1
- CS 43, Spring 2008: Introduction to Bioinformatics http://www.cs.dartmouth.edu/cbk/bio/
- In uence-Based Model Decomposition Christopher Bailey-Kellogg
- The SAL Interpreter for Large-Scale Optimization in Distributed Control Systems
- Containment Policies for Transmissible Diseases Shirish Tatikonda, Sameep Mehta, and Srinivasan Parthasarathy
- The Heuristic Reasoning Manifesto Praveen K. Paritosh (paritosh@cs.northwestern.edu)
- PREPRINT, TO APPEAR IN IEEE TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 1 Graphical Models of Residue Coupling
- electronic reprint Acta Crystallographica Section D
- Gaussian Processes for Active Data Mining of Spatial Aggregates Naren Ramakrishnan
- CS 88/188, Fall 2005: Introduction to Bioinformatics http://www.cs.dartmouth.edu/cbk/bio/
- PREPRINT, TO APPEAR IN IEEE TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 1 Protein Design by Sampling an Undirected
- Aggregation of Location Attributes for Prediction of Infection Risk Slobodan Vucetic and Hao Sun
- Planning combinatorial disulfide cross-links for protein fold determination
- Proc. IJCAI 2001. Copyright 2001, IJCAI (www.ijcai.org). Ambiguity-Directed Sampling for Qualitative Analysis of
- Preprint, to appear in CSB 2007. Algorithms for Selecting Breakpoint Locations to Optimize Diversity
- Model Based Spatial Data Mining for Power Markets Jiangzhuo Chen
- A Random Graph Approach to NMR Sequential Assignment
- Using Orders of Magnitude in Multi-attribute Decision-making Nuria Agell and Xari Rovira
- Garp3 A new Workbench for Qualitative Reasoning and Modelling Bert Bredeweg1
- Preprint to appear in RECOMB, 2008. Algorithms for Joint Optimization of Stability
- Qualitative Modeling and Simulation of Genetic Regulatory Networks: From Piecewise-Affine Differential Equations to Reporter Gene Data (and Back)
- Proc. 12th International Workshop on Qualitative Reasoning, Cape Cod, Mass., May 1998 Reasoning About and Optimizing
- Towards the use of Qualitative Reasoning for supporting Information Technology Management
- Proc. Pac. Symp. Biocomp. (PSB), 2004. GEOMETRIC ANALYSIS OF CROSS-LINKABILITY
- Spatial Aggregation for Qualitative Assessment of Scientific Computations Chris Bailey-Kellogg
- THE SPATIAL AGGREGATION LANGUAGE FOR MODELING AND CONTROLLING DISTRIBUTED
- The NOESY Jigsaw: Automated Protein Secondary Structure and Main-Chain Assignment from Sparse, Unassigned NMR Data
- Preprint of paper in Journal of Computational Biology, 8:1936, 2001. Reducing Mass Degeneracy in SAR by MS
- This is HIV-1 protease on drugs. Any questions?
- Analogical Model Formulation for AP Physics Problems Matthew Klenk, Kenneth D. Forbus
- Using Physicochemical Properties of Amino Acids to induce Graphical Models of Residue Couplings
- Algorithms for optimizing cross-overs in DNA shuffling Dept. of Computer Science
- Preprint, to appear in Proc. RECOMB-12. Structure-Guided Deimmunization
- Preprint, to appear in Proc. RECOMB-12. A Ball-based Algorithm for Structural Motifs
- Using Physicochemical Properties of Amino Acids to induce Graphical Models of Residue Couplings
