- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 10, Number 6, 2003
- Distributed Robotic Manipulation: Experiments in Minimalism
- A Single Universal Force Field Can Uniquely Orient Non-Symmetric Parts
- A. Apostolico et al. (Eds.): RECOMB 2006, LNBI 3909, pp. 546 562, 2006. Springer-Verlag Berlin Heidelberg 2006
- Predicting resistance mutations using protein design algorithms
- Supplementary Material for "High-Resolution Protein Structure Determination Starting with
- Supporting Information for "Computational Structure-Based Redesign
- This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research
- Chemistry & Biology Allosteric Inhibition of the Protein-Protein
- Redesigning the PheA Domain of Gramicidin Synthetase Leads to a New Understanding of the Enzyme's Mechanism and Selectivity
- 10.1110/ps.062427307Access the most recent version at doi: 2007 16: 69-81Protein Sci.
- A Polynomial-Time Algorithm for de novo Protein Backbone Structure Determination from NMR Data
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 13, Number 7, 2006
- A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign, and its Application to Modify the
- High-Throughput 3D Structural Homology Detection via NMR Resonance Christopher James Langmead
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 11, Numbers 23, 2004
- Anthony K. Yan Christopher J. Langmead
- This is an electronic reprint of: C. Langmead and B. R. Donald. 3D Structural Homology Detection via Unassigned Residual
- This is an electronic reprint of: C. Langmead, A. Yan, R. Lilien, L. Wang, and B. R. Donald. A Polynomial-Time Nuclear
- Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns
- Physical Geometric Algorithms for Structural Molecular Biology Chris Bailey-Kellogg John J. Kelley, III Ryan Lilien Bruce Randall Donald
- IEEE MEMS (2003) pp. 124-129. POWER DELIVERY AND LOCOMOTION OF UNTETHERED MICRO-ACTUATORS
- DOI: 10.1007/s004539910023 Algorithmica (2000) 26: 515559
- Provably Good Approximation Algorithms for Optimal Kinodynamic Planning: Robots with
- Provably Good Approximation Algorithms for Optimal Kinodynamic Planning for Cartesian Robots and Open Chain
- ARTIFICIAL INTELLIGENCE 295 A Search Algorithm for Motion
- Our goal is to embed free-form constraints into a graphical model. With such constraints a graphic can maintain its visual
- Real-Time Robot Motion Planning Using Rasterizing Computer Graphics Hardware
- DOI: 10.1007/s004539910015 Algorithmica (2000) 26: 311312
- Micro Contacts and Micro Manipulation with MEMS Actuator Arrays
- Practical Mobile Robot SelfLocalization Jon Howell Bruce Randall Donald #
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 10, Numbers 34, 2003
- IEEE Computational Systems Bioinformatics (CSB) Conference. Stanford, CA 2005; pp. 189202. An Efficient and Accurate Algorithm for Assigning Nuclear Overhauser Effect
- Extracting Structural Information Using Time-Frequency Analysis of Protein NMR Data
- Karl-Friedrich Bhringer University of Washington, Seattle
- Programmable Vector Fields for Distributed Manipulation, with Applications to MEMS Actuator Arrays and Vibratory Parts
- Part Orientation with One or Two Stable Equilibria
- Physical Geometric Algorithms for Structural Molecular Biology # Chris BaileyKellogg + John J. Kelley, III +# Ryan Lilien + Bruce Randall Donald +#
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 7, Numbers 3/4, 2000
- Proc. IEEE Workshop on Micro Electro Mechanical Structures (MEMS), San Diego, CA, February 1996. SINGLECRYSTAL SILICON ACTUATOR ARRAYS FOR MICRO MANIPULATION TASKS
- Upper and Lower Bounds for Programmable Vector Fields with Applications to MEMS and Vibratory Plate
- Journal of Computational Biology, 8:1936, 2001. Reducing Mass Degeneracy in SAR by MS
- IEEE Computational Systems Bioinformatics (CSB) Conference. Stanford, CA 2005; pp. 235246. An Algebraic Geometry Approach to Protein Structure Determination
- Part Orientation with One or Two Stable Equilibria
- RealTime Robot Motion Planning Using Rasterizing Computer Graphics Hardware
- Vol. 22 no. 14 2006, pages e174e183 doi:10.1093/bioinformatics/btl220BIOINFORMATICS
- BIOINFORMATICS Vol. 21 Suppl. 1 2005, pages i292i301
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 12, Number 6, 2005
- Chemistry & Biology 14 Supplemental Data
- The Area Bisectors of a Polygon and Force Equilibria in Programmable Vector Fields \Lambda
- Modeling Protein Flexibility for Structure-Based Active Site Redesign
- ELSEVIER Artificial Intelligence 72 ( 1995) 217-304 Intelligence
- Algorithmic MEMS Karl Friedrich Bohringer, University of California at Berkeley, Berkeley, CA 94720
- Minimalism + Distribution = Supermodularity Bruce Donald Jim Jennings
- ARTIFICIAL INTELLIGENCE 223 A Geometric Approach to Error
- A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid
- BIOINFORMATICS Bioinformatics Vol. 21 Suppl. 1 2005
- CMOS INTEGRATED ORGANIC CILIARY ACTUATOR ARRAYS
- Analysis of a Systematic Search-Based Algorithm for Determining Protein Backbone Structure from a Minimum Number of Residual Dipolar Couplings
- Program Mobile Robots in Scheme1 Jonathan Rees Bruce Donald
- Computational structure-based redesign of enzyme activity
- DOI: 10.1007/s004539910018 Algorithmica (2000) 26: 364388
- EXPERIMENTS IN CONSTRAINED PREHENSILE MANIPULATION
- Supplementary Materials for Structure Determination of Symmetric Homo-oligomers by a Complete Search of Symmetry Configuration
- High-resolution protein structure determination starting with a global fold calculated from exact solutions
- Moving Furniture with Teams of Autonomous Robots Daniela Rus Bruce Donald Jim Jennings
- The Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and
- COBIOT-453; NO OF PAGES 7 Progress in computational protein design
- BIOINFORMATICS Vol. 24 ISMB 2008, pages i196i204
- Structure-based protein NMR assignments using native structural ensembles
- Proc. of IEEE Int. Conf. on Robotics and Automation, San Diego, CA, May 1994. Sensorless Manipulation Using Massively Parallel
- Journal of Computational Biology, 7:537558, 2000. The NOESY Jigsaw: Automated Protein Secondary
- Journal of Biomolecular NMR 29: 223242, 2004. 2004 Kluwer Academic Publishers. Printed in the Netherlands.
- Phylogenetic Classification of Protozoa Based on the Structure of the Linker Domain in the Bifunctional Enzyme, Dihydrofolate
- Bruce Randall Donald James Jennings #
- Vol. 23 ISMB/ECCB 2007, pages i185i194 BIOINFORMATICS doi:10.1093/bioinformatics/btm197
- Distributed Manipulation of Multiple Objects using Ropes Bruce Donald # , Larry Gariepy, and Daniela Rus +
- PART ORIENTATION WITH ONE OR TWO STABLE EQUILIBRIA USING
- On the Area Bisectors of a Polygon \Lambda KarlFriedrich Bohringer y
- Journal of Computational Biology 10(6) 2003, pp. 925-946. Probabilistic Disease Classification of
- Plenary lecture at WAFR, Utrecht/Zeist, The Netherlands. July 11-13, 2004. Algorithmic Challenges in Structural
- Journal of Computational Biology 10(3-4) 2003, pp. 521-536. Phase-Independent Rhythmic Analysis of
- Journal of Biomolecular NMR 29: 111138, 2004. 2004 Kluwer Academic Publishers. Printed in the Netherlands.
- Cover: The crystal structure of dihydrofolate reductase-thymidylate synthase (DHFR-TS) from Cryptosporidium hominis. From R. O'Neil, R. Lilien, B. R. Donald, R. Stroud, and A. Anderson. The crystal structure of dihydrofolate
- JOURNAL OF COMPUTATIONAL BIOLOGY Volume 8, Number 1, 2001
- A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression Patterns
- Proceedings of the Second International Workshop on Algorithmic Foundations of Robotics, Toulouse, France, July 1996 Robust Geometric Algorithms for Sensor Planning \Lambda
- A DATA-DRIVEN, SYSTEMATIC SEARCH ALGORITHM FOR STRUCTURE DETERMINATION OF DENATURED OR DISORDERED PROTEINS
- Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data
- A graphical method for analyzing distance restraints using residual dipolar couplings
- Research Article A Geometric Arrangement Algorithm for Structure
- proteinsSTRUCTURE O FUNCTION O BIOINFORMATICS Protein loop closure using orientational
- Supporting Information for "Protein Loop Closure Using Orientational Restraints
- MASSACHUSETTS INSTITUTE OF TECHNOLOGY ARTIFICIAL INTELLIGENCE LABORATORY
- Protein Design Using Continuous Rotamers Pablo Gainza1.
