- APPROXIMATING THE STRETCH FACTOR OF EUCLIDEAN GIRI NARASIMHAN AND MICHIEL SMID
- Presenter: Chengyong Yang E-mail: cyang01@cs.fiu.edu An Ecoinformatics Tool for Microbial Diversity Studies: Supervised Classification of ALH Profliles of 16S rRNA
- Approximating geometric bottleneck shortest Prosenjit Bose 1 , Anil Maheshwari 1 , Giri Narasimhan 2 ,
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- 1/30/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- Polymerase Chain Reaction (PCR) For testing, large amount of DNA is needed
- 1/25/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 3/8/2011 CAP5510 / CGS5166 1 CAP 5510: Introduction to Bioinformatics!
- Optimal Algorithms for Two-Guard Walkability of Simple Polygons
- 1/16/07 CAP5510/CGS5166 1 CAP 5510: Introduction to Bioinformatics
- 2/20/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- Improved algorithms for constructing fault-tolerant spanners
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- Giri Narasimhan CGS 5166: Bioinformatics Tools (2 cr)
- SRPING 2006: CGS 2423 C For Engineers [Programming Assignment 7;
- 2/6/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- Experiments with Computing Geometric Minimum Spanning Trees
- 2/8/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- A Dendrogram 3/15/05 1Bioinformatics (Lec 17)
- 1/9/07 CAP5510/CGS5166 1 CAP 5510: Introduction to Bioinformatics
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- Giri Narasimhan CGS 5166: Bioinformatics Tools [2 credits]
- 7/14/10 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- Motif Detection in Protein Sequences (Extended Abstract)
- 7/14/10 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- INVITED: Comparative Microbial Genomics Giri Narasimhan
- MinPD: Distance-based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies
- Solution to Exercise 14.11 The parameters for the Leapfrog Theorem
- BSC 4934: QBIC Capstone Workshop" Giri Narasimhan
- CAP5510/CGS5166 13/7/06 Nomenclature
- 1/25/05 CAP5510/CGS5166 (Lec 5) 1 Profile Method
- BLASTing Tools BLAST & FASTA: Search database for
- Optimally computing a shortest weakly visible line segment inside a simple polygon ?
- ResourceConstrained Geometric Network Optimization (Extended abstract)
- FALL 2004: CGS 2423 C For Engineers [Programming Assignment 1; Due September 13 in class.]
- 1/22/08 CAP5510/CGS5166 1 CAP 5510: Introduction to Bioinformatics
- Constructing Evolutionary/Phylogenetic Trees 2 broad categories
- 3/8/2011 CAP5510 / CGS5166 1 CAP 5510: Introduction to Bioinformatics!
- Exact and Approximation Algorithms for Computing the Dilation Spectrum of Paths,
- COP 3337 Test 3 NAME_________________ Part 1: Selection Sort
- Clustering using Adaptive Self-Organizing Maps (ASOM) and Applications
- FALL 2004: CGS 2423 C For Engineers [Programming Assignment 2; Due September 27 in class.]
- Efficient algorithms for constructing faulttolerant geometric spanners Christos Levcopoulos \Lambda Giri Narasimhan y Michiel Smid z
- IEM: An Algorithm for Iterative Enhancement of Motifs Using Comparative Genomics Data
- Presenter: Yong Wang E.mail: ywang002@fiu.edu Ecoinformatics Tools: Unsupervised Clustering and Classification of Microbial Communities Using ALH Profile Data from 16S rRNA
- Motifs in Protein SequencesMotifs in Protein Sequences Examples: Helix-Turn-Helix, Zinc-finger,
- Mining Protein Sequences for Motifs Giri Narasimhan .
- Approximation algorithms for the bottleneck stretch factor problem
- 3/11/08 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 3/27/08 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 3/25/08 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- FALL 2004: CGS 2423 C For Engineers [Programming Assignment 3; Due October 13 in class.]
- FALL 2004: CGS 2423 C For Engineers [Programming Assignments 5 and 6;
- 2/10/05 CAP5510/CGS5166 (Lec 10) 1 Profile HMMs
- 06/30/09 Q'BIC Bioinformatics 1 BSC 4934: Q BIC Capstone Workshop
- 1/10/06 CAP5510/CGS5166 1 CAP 5510: Introduction to Bioinformatics
- APPROXIMATING THE STRETCH FACTOR OF EUCLIDEAN GIRI NARASIMHAN y AND MICHIEL SMID z
- 2/20/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 1/25/05 CAP5510/CGS5166 (Lec 5) 1 Protein Structures
- Approximating Minimum Manhattan Networks (Extended Abstract)
- Graph-Theoretic Techniques in D-Optimal Design Problems Kashinath Chatterjee Giri Narasimhan y
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- A Generalization of Maximal Independent Sets Arun Jagota Giri Narasimhan y
- Constructing Evolutionary/Phylogenetic Trees 2 broad categories
- 3/24/2011 CAP5510 / CGS5166 1 CAP 5510: Introduction to Bioinformatics!
- 1/18/05 CAP5510/CGS5166 (Lec 3) 1 Sequence Alignment Why?
- SPRING 2004: COP 3530 Data Structures [Programming Assignment 4; Due April 8 in class.]
- Giri Narasimhan CGS 5166: Bioinformatics Tools [2 credits]
- 2/8/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- CloG: a pipeline for closing gaps in a draft assembly using short reads Xing Yang, Daniel Medvin, Giri Narasimhan
- Clustering Genes using Gene Expression and Text Literature Data Chengyong Yang, Erliang Zeng, Tao Li, and Giri Narasimhan*
- Cellular Microbiology (2005) 7(6), 811823 doi:10.1111/j.1462-5822.2005.00513.x 2005 Blackwell Publishing Ltd
- TRAINING SET DESIGN FOR PATTERN DISCOVERY WITH APPLICATIONS TO PROTEIN MOTIF DETECTION
- Mining Protein Sequences for Motifs Giri Narasimhan
- Approximation algorithms for the bottleneck stretch factor problem
- Improved algorithms for constructing fault-tolerant spanners
- 6/16/2009 Giri Narasimhan CURRICULUM VITAE
- Giri Narasimhan CAP 5510: Introduction to Bioinformatics (3 cr)
- CAP 5510 / CGS 5166 Bioinformatics Due: any time before April 1
- 3/22/2011 CAP5510 / CGS5166 1 CAP 5510: Introduction to Bioinformatics!
- Introduction to Bioinformatics! Giri Narasimhan
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- November 22, 2010 Pairwise sequence
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- Introduction to Bioinformatics Monday, November 15, 2010
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- 1/24/08 CAP5510/CGS5166 1 CAP 5510: Introduction to Bioinformatics
- 1/29/08 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 2/7/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 2/12/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 3/3/08 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 4/1/08 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 1/11/07 CAP5510/CGS5166 1 CAP 5510: Introduction to Bioinformatics
- 2/15/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 2/22/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- Giri Narasimhan CAP 5510: Introduction to Bioinformatics (3 cr)
- 1/12/06 CAP5510/CGS5166 1 CAP 5510: Introduction to Bioinformatics
- CAP5510/CGS5166 11/17/06 Course Homepage
- CAP5510/CGS5166 11/24/06 Sequence Alignment Why?
- BLASTing Tools BLAST & FASTA: Search database for
- Theory of Evolution Charles Darwin
- 3/31/05 1Bioinformatics (Lec 20) Theory of Evolution
- 3/1/05 1Bioinformatics (Lec 15) Gene Expression
- 1/25/05 CAP5510/CGS5166 (Lec 5) 1 Perl: Examples
- Introducing Bioperl Toward the Bioinformatics Perl programmer's
- BSC 4934: Projects List 1. SNPsandtheHapMapProject:TheInternationalHapMapProjectisamulticountry
- 7/12/10 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- BSC 4934: QBIC Capstone Workshop" Giri Narasimhan
- 06/24/09 Q'BIC Bioinformatics 1 BSC 4934: Q BIC Capstone Workshop
- 06/25/09 Q'BIC Bioinformatics 1 BSC 4934: Q BIC Capstone Workshop
- 06/29/09 Q'BIC Bioinformatics 1 BSC 4934: Q BIC Capstone Workshop
- 07/01/09 Q'BIC Bioinformatics 1 BSC 4934: Q BIC Capstone Workshop
- COP 3337 TEST 4 NAME__________________ Irvine, Spring 2001
- SPRING 2004: COP 3530 Data Structures [Programming Assignment 1; Due January 27 in class.]
- SPRING 2004: COP 3530 Data Structures [Programming Assignment 2; Due February 17 before class in my office.]
- SPRING 2004: COP 3530 Data Structures [Programming Assignment 3; Due March 16 in class.]
- SPRING 2006: CGS 2423 C For Engineers [Programming Assignments 5 and 6;
- SPRING 2006: CGS 2423 C For Engineers [Programming Assignment 2; Due February 1 in class.]
- SPRING 2006: CGS 2423 C For Engineers [Programming Assignment 1; Due January 25 in class.]
- May 21, 2008 1:27 WSPC/Trim Size: 11in x 8.5in for Proceedings 080Narasimhan Estimating Support for Protein-Protein Interaction Data with Applications to Function Prediction
- Sequence-Structure Patterns: Discovery and Applications
- QUERYING A DATABASE OF REGULATORY ELEMENTS CHENGYONG YANG
- AN APPLICATION OF ASSOCIATION RULE MINING TO HLA-A*0201 EPITOPE PREDICTION
- Probe Selection Problem: Structure and Algorithms Daniel CAZALIS
- ABSTRACTABSTRACT A novel, efficient, robust, feature-based algorithm is presented for intramodality and
- Helix-Turn-Helix Motif Detection in Protein Sequences Giri Narasimhan1, Changsong Bu2, Yuan Gao3, Tom Milledge1,
- Oct 10, 2003 Giri Narasimhan 1 Bioinformatics Research at FIU
- BLAST: at the core of a powerful and diverse set of sequence analysis tools
- CpG Islands Regions in DNA sequences with increased
- Solution to Exercise 14.15 The parameters for the Generalized Leapfrog Theorem
- 1/11/05 CAP5510/CGS5166 1 CAP 5510: Introduction to Bioinformatics
- Introduction toIntroduction to BioperlBioperl GaolinGaolin ZhengZheng
- CAP5510/CGS5166 11/31/06 Multiple Alignments: CLUSTALW
- On Hamiltonian Triangulations in Simple (Extended Abstract)
- 1/25/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 7/13/10 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- 3/29/05 1Bioinformatics (Lec 19) Picture Copyright: AccessExcellence @ the National Museum of Health
- Rules of Thumb Most sequences with significant similarity over their
- 1/13/05 CAP5510/CGS5166 (Lec 2) 1 CAP 5510: Introduction to Bioinformatics
- Motif Detection in Protein Sequences (Extended Abstract)
- November 29, 2010 Basic local alignment
- 2/14/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 1/31/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 2/17/05 1Bioinformatics (Lec 12) Amino Acid Structures from Klug & Cummings
- Neural Network Classifiers and Gene Selection Methods for Microarray Data on Human Lung Adenocarcinoma
- FALL 2004: CGS 2423 C For Engineers [Programming Assignments 7;
- Mining Regulatory Elements in the Plasmodium falciparum Genome Using Gene Expression Data
- A Knowledge-Driven Method to Evaluate Multi-Source Clustering
- What is Bioinformatics? Why Bioinformatics?
- SBLAST: Structural Basic Local Alignment Searching Tools using Geometric Hashing
- 2/26/08 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 07/02/09 Q'BIC Bioinformatics 1 BSC 4934: Q BIC Capstone Workshop
- Degenerate Primer Design via Clustering School of Computer Science,
- 7/20/10 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- FALL 2004: CGS 2423 C For Engineers [Programming Assignment 4; Due November 1 in class.]
- 2/21/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- Improved Greedy Algorithms for Constructing Sparse Geometric Spanners
- Approximate Distance Oracles for Geometric Graphs Joachim Gudmundsson Christos Levcopoulos y Giri Narasimhan z Michiel Smid x
- COP 3337 TEST 3 Spring 2001, Irvine. Do not write on this test paper. Write your answers on the separate answer sheet provided to you. Three points on the test are counted towards clear, neat printing.
- Distance-preserving approximations of polygonal Joachim Gudmundsson 1 , Giri Narasimhan 2 , and Michiel Smid 3
- 1/23/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- CAP 5510: Introduction to Bioinformatics CGS 5166: Bioinformatics Tools"
- 7/19/10 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- International Journal of Computational Geometry & Applications fl World Scientific Publishing Company
- 1/20/05 CAP5510/CGS5166 (Lec 4) 1 Types of Sequence Alignments
- 2/19/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 3/5/08 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 1/25/05 CAP5510/CGS5166 (Lec 5) 1 BLAST & FASTA
- 2/5/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- 1/18/07 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- Giri Narasimhan CAP 5510: Introduction to Bioinformatics (3 cr)
- 2/26/08 CAP5510 1 CAP 5510: Introduction to Bioinformatics
- SPRING 2004: COP 3530 Data Structures [Programming Assignment 5; Due April 15 in class.]
- On the Effectiveness of Constraints Sets in Clustering Genes
- 07/18/11 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- 07/14/11 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- 7/19/11 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- 7/13/11 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- 7/11/11 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- A. Riboswitches in Bacteria What are riboswitches? How do they work? How do they control gene expression? How can they be identified in
- 7/25/11 CAP 5510 / CGS 5166 1 BSC 4934: QBIC Capstone Workshop"
- 7/19/11 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
- 7/12/11 BSC 4934 1 BSC 4934: QBIC Capstone Workshop"
- 7/19/11 Q'BIC Bioinformatics 1 BSC 4934: QBIC Capstone Workshop"
