- Semi-Supervised Affinity Propagation with Instance-Level Constraints
- NOTE Communicated by Yair Weiss A Binary Variable Model for Affinity Propagation
- Constructing Treatment Portfolios Using Affinity Propagation
- Fast Transformation-Invariant Component Analysis Anitha Kannan1, Nebojsa Jojic2, Brendan J. Frey1
- http://www.psi.toronto.edu Inferring Alternative Splicing Combinations from
- Clustering by Passing Messages Between Data Points
- Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes
- Genome Biology 2007, 8:R108 commentreviewsreportsdepositedresearchrefereedresearchinteractionsinformation
- Vol. 22 no. 5 2006, pages 606613 doi:10.1093/bioinformatics/btk028BIOINFORMATICS ORIGINAL PAPER
- Using "epitomes" to model genetic diversity: Rational design of HIV vaccine cocktails
- Mixture Modeling by Affinity Propagation Brendan J. Frey and Delbert Dueck
- www.sciencemag.org SCIENCE VOL 311 24 MARCH 2006 1709 LETTERS I BOOKS I POLICY FORUM I EDUCATION FORUM I PERSPECTIVES
- A Comparison of Algorithms for Inference and Learning in Probabilistic Graphical Models
- Probabilistic Inference of Alternative Splicing Events in Microarray Data
- BIOINFORMATICS Vol. 21 Suppl. 1 2005, pages i144i151
- BIOINFORMATICS Vol. 21 Suppl. 1 2005, pages i222i231
- A Generative Model of Dense Optical Flow in Layers
- Epitomic analysis of appearance and shape Nebojsa Jojic Brendan J. Frey Anitha Kannan
- Fast Transformation-Invariant Factor Analysis Anitha Kannan
- TRANSLATING IMAGES BY UNSUPERVISED ESTIMATION OF SWITCHING FILTERS Romer Rosales, Kannan Achan, and Brendan Frey
- Appears in: Proc. International Conference on Computer Vision, October 2003. Unsupervised Image Translation
- ACCOUNTING FOR UNCERTAINITY IN OBSERVATIONS: A NEW PARADIGM FOR ROBUST AUTOMATIC SPEECH RECOGNITION
- Separating Appearance from Deformation Nebojsa Jojic1
- UNWRAPPING PHASE IMAGES BY PROPAGATING PROBABILITIES ACROSS GRAPHS Ralf Koetter
- Event-coupled hidden Markov models Trausti T. Kristjansson
- Variational Learning in Nonlinear Gaussian Belief Networks
- REyebrow LEyebrow Figure 1. Scheme of the Facial Features and
- IEEE JOURNAL ON SELECTED AREAS IN COMMUNICATIONS, VOL. 16, NO. 1, JAN. 1998 1 Iterative Decoding of Compound Codes by
- PROBABILISTIC MULTIMEDIA OBJECTS (MULTIJECTS): A NOVEL APPROACH TO VIDEO INDEXING AND RETRIEVAL IN MULTIMEDIA
- Trellis-Constrained Codes Brendan J. Frey
- Variational Learning in Non-Linear Gaussian Belief Networks
- Variational inference for continuous sigmoidal Bayesian networks
- Deciphering the splicing code Yoseph Barash1,2
- DOI: 10.1126/science.1151268 , 726d (2008);319Science
- Interpreting Graph Cuts as a Max-Product Algorithm Daniel Tarlow, Inmar E. Givoni, Richard S. Zemel, Brendan J. Frey
- Learning Better Image Representations Using `Flobject Analysis': Supplementary Material
- CSC2515'02 1 Linear Algebra Review
- PTMClust: Supplementary Information THE EXPECTATION-MAXIMIZATION ALGORITHM
- Signal Classification through Multifractal Analysis and Complex Domain Neural Networks
- May 5, 2003 Signal Classification through
- June 10, 2002 An Introduction to
- Assignment is Due Friday, Oct 15 TA Office Hours Fridays 2pm, Pratt 290C
- Probabilistic Inference of Alternative Splicing Events in Microarray Data
- Molecular Cell, Vol. 16, 929941, December 22, 2004, Copyright 2004 by Cell Press Revealing Global Regulatory Features
- Global Survey of Organ and Organelle Protein Expression in Mouse: Combined
- Appears in: Proc. Uncertainty in Artificial Intelligence, August 2003. Learning Generative Models of Similarity Matrices
- Learning Rankings via Convex Hull Separation Glenn Fung, Romer Rosales, Balaji Krishnapuram
- Focused Inference Romer E. Rosales
- Learning to Cluster using Local Neighborhood Structure Romer Rosales+
- APPEARS IN: PROC. IEEE WORKSHOP ON STATISTICAL SIGNAL PROCESSING (INVITED PAPER), SEP 2003.
- Keeping flexible active contours on track using Metropolis updates
- September 24, 2007 16:8 Proceedings Trim Size: 9in x 6in PSB2008GenMiR3 COMPARING SEQUENCE AND EXPRESSION FOR
- Using expression profiling data to identify human microRNA targets
- A Comparison of Algorithms for Inference and Learning in Probabilistic Graphical Models
- Cell, Vol. 113, 919933, June 27, 2003, Copyright 2003 by Cell Press A Panoramic View of Yeast Noncoding
- Denoising and untangling graphs using degree priors
- Probabilistic Inference of Speech Signals from Phaseless Spectrograms
- MATRIX TILE ANALYSIS Inmar Givoni, Vincent Cheung, Brendan J. Frey
- Appears in: Proc. International Conference on Computer Vision, October 2003. Unsupervised Image Translation
- NOISE ROBUST SPEECH RECOGNITION USING GAUSSIAN BASIS FUNCTIONS FOR NON-LINEAR LIKELIHOOD FUNCTION APPROXIMATION
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- Variational Speech Separation of More Sources than Mixtures Steven J. Rennie, Kannan Achan, Brendan J. Frey, Parham Aarabi
- LEGINON: A SYSTEM FOR FULLY AUTOMATED ACQUISITION OF 1000
- Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs
- Department of Computer Science 6 King's College Rd, Toronto University of Toronto M5S 3G4, Canada
- http://www.psi.toronto.edu Factorgrams: A tool for visualizing multi-way
- Flexible Priors for Exemplar-based Clustering Daniel Tarlow
- TOWARDS NON-STATIONARY MODEL-BASED NOISE ADAPTATION FOR LARGE VOCABULARY SPEECH RECOGNITION
- Z .Advances in Environmental Research 5 2001 435 444 The automated extraction of environmentally relevant
- Efficient Stochastic Source Coding and an Application to a Bayesian Network Source Model
- IEEE JOURNAL ON SELECTED AREAS IN COMMUNICATIONS, VOL. 16, NO. 2, FEBRUARY 1998 153 Early-Detection and Trellis Splicing
- Review session Thursday, 3pm-4pm, Dec 2nd, Pratt 290C
- Capturing long-range correlations with patch models Vincent Cheung
- ROBUST VARIATIONAL SPEECH SEPARATION USING FEWER MICROPHONES THAN Steven Rennie, Parham Aarabi, Trausti Kristjansson, Brendan J. Frey, Kannan Achan
- HOP-MAP: Efficient Message Passing with High Order Potentials Daniel Tarlow Inmar E. Givoni Richard S. Zemel
- 128 IEEE TRANSACTIONS ON MEDICAL IMAGING, VOL. 25, NO. 1, JANUARY 2006 Unwrapping of MR Phase Images Using a
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- May 27, 2002 An Introduction to Neural Networks
- Identifying transcription factor functions and targets by phenotypic activation
- Markovian Inference in Belief Networks Brendan J. Frey
- Embedding Methods and Dimensionality Reduction
- Factor Graphs and Algorithms Brendan J. Frey
- 1960 1970 1980 1990 2000 2010 Population Sequencing from Chromatogram Data
- Video epitomes Vincent Cheung1
- Mixtures of Local Linear Subspaces for Face Recognition Brendan J. Frey (www.cs.utoronto.ca/ frey), Antonio Colmenarez, Thomas S. Huang
- A Bayesian model that links microarray mRNA measurements to mass spectrometry protein
- Cumulative distribution networks and the derivative-sum-product algorithm
- UNWRAPPING PHASES BY RELAXED MEAN FIELD INFERENCE Kannan Achan, Brendan J. Frey
- Generative Model for Layers of Appearance and Deformation Anitha Kannan1
- (14). Future work will surely focus on why more of apparently the same neurons seem
- Continuous sigmoidal belief networks trained using slice sampling
- 498 IEEE TRANSACTIONS ON INFORMATION THEORY, VOL. 47, NO. 2, FEBRUARY 2001 Factor Graphs and the Sum-Product Algorithm
- Learning to Cluster using Local Neighborhood Structure
- 10.1101/gad.1382806Access the most recent version at doi: 2006 20: 153-158Genes Dev.
- Learning Better Image Representations Using `Flobject Analysis' Patrick S. Li
- JOINT ESTIMATION OF NOISE AND CHANNEL DISTORTION IN A GENERALIZED EM T. Kristjansson, B. Frey
- Assignment 1 will be posted on the course webpage tomorrow.
- 196 IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS--PART C: APPLICATIONS AND REVIEWS, VOL. 36, NO. 2, MARCH 2006 Special Issue Correspondence
- Deep Belief Networks for phone recognition Abdel-rahman Mohamed, George Dahl, and Geoffrey Hinton
- IEEE TRANSACTIONS ON INFORMATION THEORY, VOL. 47, NO. 2, FEBRUARY 2001 493 Introduction to the Special Issue on Codes on Graphs
- PSI-2003-20 1 Abstract--The sum-product algorithm is an important tool for
- Variational Probabilistic Speech Separation using Microphone Arrays
- Focused Inference Romer E. Rosales #
- Learning to Cluster using Local Neighborhood Structure Romer Rosales #+ romer@csail.mit.edu
- Time-Series Classification Using Mixed-State Dynamic Bayesian Networks Vladimir Pavlovicy, Brendan J. Freyz, and Thomas S. Huang
- GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data
- Research article The functional landscape of mouse gene expression
- Fast, large-scale transformation-invariant Brendan J. Frey
- Early Detection and Trellis Splicing: Reduced-Complexity Soft Iterative Decoding
- CCECE 2003 -CCGEI 2003, Montral, May/mai 2003 0-7803-7781-8/03/$17.00 2003 IEEE
- Jan. 21, 2005 Markov Random Fields &
- Variational Learning in Mixed-State Dynamic Graphical Models Vladimir Pavlovic
- Hierarchical Affinity Propagation Inmar E. Givoni, Clement Chung, Brendan J. Frey
- Hierarchical Affinity Propagation Supplementary Material
- Graph Cuts is a Max-Product Algorithm Daniel Tarlow, Inmar E. Givoni, Richard S. Zemel, Brendan J. Frey
- Matching Unstructured Product Offers to Structured Product Specifications
- Learning Better Image Representations Using `Flobject Analysis' Patrick S. Li
- Beyond Affinity Propagation: Message Passing Algorithms for Clustering
- ECE1510/CSC2535: Advanced Inference Algorithms and Machine Learning
- A Comparison of Algorithms for Inference and Learning in Probabilistic Graphical Models
- CSC2515'02 1 Linear Algebra Review
- Probability and Statistics October 2, 2002
- matrix identities (revised June 1999)
- gaussian identities (revised July 1999)
