Kececioglu, John - Department of Computer Science, University of Arizona

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Kececioglu, John - Department of Computer Science, University of Arizona

Notes on a multiple alignment costbound of Carrillo and Lipman \Lambda
A branchandcut approach to physical mapping of chromosomes
Reconstructing a DNA Sequence from Erroneous Copies (Preliminary Report)
HIV1 encodes a sequence overlapping env gp41 with highly significant similarity to
Reconstructing distances in physical maps of chromosomes with nonoverlapping probes
Exact and approximation algorithms for sorting by reversals, with application
Simple and Fast Inverse Alignment John Kececioglu and Eagu Kim
Learning models for aligning protein sequences with predicted secondary structure
Making the ShortestPaths Approach to SumofPairs Multiple Sequence Alignment More Space Efficient in
Separating repeats in DNA sequence assembly (Extended abstract)
Computing maximumcardinality matchings in sparse general graphs \Lambda
Dynamic PathBased Software Watermarking # C. Collberg E. Carter S. Debray A. Huntwork J. Kececioglu C. Linn M. Stepp
Of mice and men: Algorithms for evolutionary distances
Aligning protein sequences with predicted secondary structure
Reconstructing a history of recombinations from a set of sequences \Lambda
Inverse Sequence Alignment from Partial Examples
A Polyhedral Approach to Sequence Alignment Problems
Enhancing Software TamperResistance via Stealthy Address Computations
Learning Scoring Schemes for Sequence Alignment from Partial Examples
Approximation algorithms for multiple sequence alignment
Assessing distant homology between an aligned family and a proposed member
Book review: Sequence Analysis Primer
Combinatorial algorithms for DNA sequence assembly \Lambda
Steiner points in the space of genome rearrangements \Lambda
Computing physical maps of chromosomes with nonoverlapping probes by branchandcut
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising