| Sample search results for: a-dna |
| 1 | Ancient DNA Laboratory Guidelines Room 78, University of Michigan Ruthvens Museums | ||
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Summary: concern regarding the University of Michigan Museum of Zoology's Ancient DNA (aDNA) Laboratory... contamination of the aDNA Laboratory is to keep entry to a minimum. Doors should be locked at all times... . Janitorial staff will not enter these rooms; neither should you, unless you are actively processing aDNA |
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Source: Cortes-Ortiz, Liliana - Department of Ecology and Evolutionary Biology, University of Michigan |
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Collection: Environmental Sciences and Ecology ; Biology and Medicine |
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| 2 | 758 nature structural biology volume 7 number 9 september 2000 The extended and eccentric | ||
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Summary: conformation gives the characteristic deep major groove and shallow minor groove of A-DNA. Also, if allowed... to crystallize for a period of time longer than that yielding E-DNA, the methylated sequence forms standard A-DNA... , suggesting that E-DNA is a kinetically trapped intermediate in the transition to A-DNA. Thus, the ... |
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Source: Eichman, Brandt F. - Department of Biological Sciences, Vanderbilt University |
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Collection: Biology and Medicine |
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| 3 | Note: this is an expanded version of the entry entitled "Ancient DNA" in the 2002 McGraw-Hill, Yearbook of Science and Technology, pp. 9-14. | ||
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Summary: from long-gone sources has typically been dubbed the study of ancient DNA (or aDNA for short... DNA)-like nuclear pseudogenes. With the publication of these incriminating studies, a pall fell over the aDNA... . Why is aDNA so Difficult? The challenges of aDNA studies can be summarized as 1) poor DNA quality |
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Source: Yoder, Anne - Department of Biology, Duke University |
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Collection: Environmental Sciences and Ecology |
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| 4 | Letter to the Editor Ancient DNA Methodology: Thoughts from Brian M. Kemp and | ||
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Summary: to future discoveries and progression of the ancient DNA (aDNA) field as a whole. Reviewer 1 refers to six... cannot alone authenticate aDNA results. Conversely, (2) failing to follow all these standards does... 305 times, making it a classic for the aDNA field (website accessed December 22, 2009). A few years |
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Source: Kemp, Brian M. - Department of Anthropology & School of Biological Sciences, Washington State University |
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Collection: Biology and Medicine |
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| 5 | J. Mol. Biol. (1986) 188, 455-475 Structure Refinement of Oligonucleotides by Molecular | ||
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Summary: of distance restraints taken from classical B-DNA to a simulation starting off from A-DNA and vice versa... different B-DNA structures, the method was incapable of converging to such a B-DNA structure starting from A-DNA... the method with an idealized set of 192 distance restraints taken from classical B-DNA and A-DNA by ... |
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Source: Clore, G. Marius - Laboratory of Chemical Physics. National Institutes of Health |
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Collection: Biology and Medicine |
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| 6 | Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis | ||
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Summary: , 2006 ABSTRACT Although ancient DNA (aDNA) miscoding lesions have been studied since the earliest days... miscoding lesions constitute true aDNA damage as opposed to PCR polymerase amplification error. Furthermore... characterization of the aDNA damage behind the observed phenotypes. Through compa- rative analyses on 390 965 bp |
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Source: Wiuf, Carsten - Bioinformatics Research Center, University of Aarhus |
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Collection: Biotechnology |
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| 7 | Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis | ||
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Summary: , 2006 ABSTRACT Although ancient DNA (aDNA) miscoding lesions have been studied since the earliest days... miscoding lesions constitute true aDNA damage as opposed to PCR polymerase amplification error. Furthermore... characterization of the aDNA damage behind the observed phenotypes. Through compa- rative analyses on 390 965 bp |
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Source: Miller, Webb - Departments of Biology & Computer Science and Engineering, Pennsylvania State University |
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Collection: Biology and Medicine ; Computer Technologies and Information Sciences |
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| 8 | 3-Methyladenine DNA glycosylases: structure, | ||
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Summary: deficient in 3-MeA DNA glycosylase activity. 3-MeA DNA glycosylases excise a wide range of substrates DNA... glycosylases that remove 3-MeA DNA lesions are found in bacteria, yeast, plants, rodents, and humans. The wide... - spread occurrence of this DNA repair ... |
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Source: Lau, Albert Y. - Department of Biophysics and Biophysical Chemistry, Johns Hopkins University |
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Collection: Biology and Medicine |
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| 9 | Ji-Long Liu / Journal of Genetics and Genomics 36 (2009) 1 Fig. 1. An antibody recognizes sperm tails in Drosophila melanogaster. A-C: testis from a third-instar larva. Cephalad pole to the left. A: DNA staining | ||
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Summary: and Genomics 36 (2009) Fig. 2. Macro- and micro-cytoophidia in an egg chamber. A: DNA, stained with Hoechst... in an egg chamber. A: DNA, stained with Hoechst 33342. B: CTP synthase. Note that the gain was adjusted so... tails in Drosophila melanogaster. A-C: testis from a third-instar larva. Cephalad pole ... |
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Source: |
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Collection: Biology and Medicine |
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| 10 | Bayesian Estimation of Sequence Damage in Ancient DNA Simon Y. W. Ho,* Tim H. Heupink,* Andrew Rambaut, and Beth Shapiro | ||
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Summary: , can lead to the inclusion of spurious additional mutations in ancient DNA (aDNA) data sets. This has... is then applied to 13 aDNA data sets. The amount of damage in these data sets is shown to be significant but low... high rates of mutation previously estimated from aDNA data are not entirely an artifact of sequence |
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Source: Shapiro, Beth - Department of Biology, Pennsylvania State University |
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Collection: Biology and Medicine |
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| 11 | BIOLOGICAL FRAMEWORKS FOR ENGINEERS Session #5a [nm: Protein Form] | ||
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Summary: modifications #12;ME498/599 WORKSHEET: DNA Sequence to Protein Function What is the relationship between: a. DNA |
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Source: Sniadecki, Nathan J. - Department of Mechanical Engineering, University of Washington at Seattle |
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Collection: Biology and Medicine ; Engineering |
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| 12 | Bayesian Inference of Errors in Ancient DNA Caused by Postmortem Degradation | ||
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Summary: , University of California, Davis Methods for extracting and amplifying sequences using ancient DNA (aDNA) can... is developed for predicting errors in aDNA sequences caused by such processes. In addition to the canonical DNA... via postmortem degradation of the aDNA sequences. A computer program, BYPASSR-degr, was developed |
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Source: |
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Collection: Biology and Medicine |
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| 13 | BULLETIN OF MARINE SCIENCE, 81(3): 351360, 2007 351Bulletin of Marine Science | ||
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Summary: applications of ancient DNA (aDNA) techniques have been real- ized relatively recently, and have been... and mammals, we have produced a method for extracting and amplifying aDNA from sub-fossil (not embedded... fossil and live specimens resulted in clustering by species, demonstrating the validity of this new aDNA |
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Source: Adkins, Jess F. - Division of Geological and Planetary Sciences, California Institute of Technology |
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Collection: Environmental Sciences and Ecology ; Geosciences |
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| 14 | 22 2 3 | ||
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Summary: . EMBO J. (2002) 21, 6419-28 Double-strand DNA beaks recruit the centromeric histone CENP-A DNA... DNA DNA DNA DNA DNA DNA H3CENP-A #12;13 (M ) CENP-A DNA DNA DNA... () CENP-A DNA DNA CENP-A H2B, H3.1 ... |
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Source: Takada, Shoji - Department of Biophysics, Kyoto University |
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Collection: Chemistry ; Biotechnology |
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| 15 | 2003 The Society for the Study of Evolution. All rights reserved. Evolution, 57(8), 2003, pp. 19311946 | ||
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Summary: DNA) and in autosomal DNA (aDNA) in the same individuals, even though these genomes are partially co... on Sulawesi macaque mtDNA and aDNA by comparing evolution, phylogeography, and population subdivision of each... between populations within species but in aDNA most variation is partitioned within populations. That mt |
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Source: Evans, Ben J. - Department of Biology, McMaster University |
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Collection: Environmental Sciences and Ecology ; Biology and Medicine |
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| 16 | Engineered polymerases amplify the potential of ancient DNA | ||
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Summary: amplification of DNA from an `ancient' specimen 25 years ago [1], `ancient DNA' (aDNA) has attracted interest... -throughput sequencing-by- synthesis platforms, most aDNA studies relied on the amplification of selected sequence... would have a considerable beneficial impact on aDNA research. Making more from nothing: a polymerase |
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Source: Shapiro, Beth - Department of Biology, Pennsylvania State University |
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Collection: Biology and Medicine |
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| 17 | Autonomous DNA Walking Devices Peng Yin*, Andrew J. Turberfield, Hao Yan*, John H. Reif* | ||
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Summary: *C B + C* C*D C + D* D*A D + A* DNA Walker: Operation 24 B C Track Anchorage A Walker * AD #12;· Valid... *B A + B* B*C B + C* C*D C + D* D*A D + A* DNA Walker: Operation 27 A*B A PflM I C D #12;· Valid... *B A + B* B*C B + C* C*D C + D* D*A D + A* DNA Walker: ... |
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Source: Reif, John H. - Department of Computer Science, Duke University |
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Collection: Computer Technologies and Information Sciences |
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| 18 | Copyright 2010 by the Genetics Society of America DOI: 10.1534/genetics.110.116228 | ||
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Summary: chromosomes and mitochondrial DNA (mtDNA) differ in copy number from autosomal DNA (aDNA): both sexes have two... polymorphism at mtDNA, aDNA, the X chromosome (xDNA), and the Y chromosome (yDNA) (Hedrick 2007). The effective... @mcmaster.ca Genetics 185: 923937 ( July 2010) #12;number of offspring with a mean of two offspring per individual, ... |
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Source: Evans, Ben J. - Department of Biology, McMaster University |
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Collection: Environmental Sciences and Ecology ; Biology and Medicine |
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| 19 | Ancient plant DNA in archaeobotany Angela Schlumbaum Marrie Tensen | ||
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Summary: may be gained from ancient DNA (aDNA) research. 1. Archaeobotanical reconstructions depend... be an extinct wheat cultivar or even-- as suggested by aDNA--a wheat related to Triticum timopheevii with the G... et al. 1989). aDNA research can clarify such cases by investigation of genetic diversity within |
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Source: Jacomet, Stefanie - Institut für prähistorische und naturwissenschaftliche Archäologie, Universität Basel |
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Collection: Geosciences ; Biology and Medicine |
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| 20 | CLASS 2.6: 03/01/07 DNA REPLICATION | ||
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Summary: 1 CLASS 2.6: 03/01/07 DNA REPLICATION A. DNA Polymerases: 1. General characteristics - Not every... by #12;2 - Some DNA pols function - Others are - Are 5 DNA pols in E. coli a. DNA pol I - involved in b... replication is faithful ~ - Expect error rate ~ a. DNA pols ... |
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Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas |
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Collection: Biology and Medicine |
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| 21 | 23 2 53 5 | ||
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Summary: ··········································5 ····························································6 Cenp-A DNA... 2. 3. 23 1 20 4. (a) (b) 5. 2 22 12 17 #12;9 Cenp-A DNA H3 ... |
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Source: Takada, Shoji - Department of Biophysics, Kyoto University |
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Collection: Chemistry ; Biotechnology |
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| 22 | Anne D. Yoder, Director of Duke Lemur Center and Professor of Biology and | ||
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Summary: .. "Geographic origins of aDNA samples and prospects for aDNA studies in the tropics.." Molecular Markers, PCR |
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Source: Zhou, Pei - Departments of Chemistry & Biochemistry, Duke University |
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Collection: Chemistry ; Biology and Medicine |
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| 23 | Kraftfelder Bindungen, Winkel | ||
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Summary: -bindende Wechselwirkungen 4 #12;5 #12;Periodische Randbedingungen 6 #12;DNA A-DNA vs. B-DNA 7 #12;DNA A-DNA vs. B-DNA 8 #12 |
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Source: Hartke, Bernd - Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel |
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Collection: Chemistry |
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| 24 | Proc. Natl. Acad. Sci. USA Vol. 94, pp. 1308713092, November 1997 | ||
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Summary: , and approved September 30, 1997 (received for review August 8, 1997) ABSTRACT 3-methyladenine (3MeA) DNA... the generation of mice deficient in the 3MeA DNA glycosylase encoded by the Aag (Mpg) gene. Alkyladenine DNA... glycosylase turns out to be the major DNA glycosylase not only for the cytotoxic ... |
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Source: Engelward, Bevin - Division of Bioengineering, Massachusetts Institute of Technology (MIT) |
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Collection: Biology and Medicine |
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| 25 | Hydration of the Phosphate Group in Double-Helical DNA Bohdan Schneider,* Ketan Patel,# | ||
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Summary: around the phosphates have not been analyzed as thoroughly as base hydration. Early studies of A-DNA... groups in the major groove of A-DNA. Several analyses of crystal structures have revealed re- peating... . In A-DNA, adenine and guanine produce similar water distributions and were therefore combined into one |
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Source: Schneider, Bohdan - Institute of Biotechnology (Prague) |
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Collection: Biotechnology ; Materials Science |
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| 26 | To Clone or Not To Clone: Method Analysis for Retrieving Consensus Sequences In Ancient DNA Samples | ||
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Summary: Abstract The challenges associated with the retrieval and authentication of ancient DNA (aDNA) evidence... ``modern'' DNA sources. The necessity for authentication of results has led many aDNA researchers to adopt... methods considered to be ``gold standards'' in the field, including cloning aDNA amplicons as opposed |
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Source: Kemp, Brian M. - Department of Anthropology & School of Biological Sciences, Washington State University |
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Collection: Biology and Medicine |
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| 27 | The EMBO Journal vol.15 no.4 pp.945-952, 1996 Repair-deficient 3-methyladenine DNA glycosylase | ||
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Summary: Corresponding author In Escherichia coli, the repair of 3-methyladenine (3MeA) DNA lesions prevents alkylation... previously isolated and characterized a mouse 3MeA DNA glycosylase cDNA (Aag) that provides resistance... null cells have no detectable Aag transcripts or 3MeA ... |
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Source: Engelward, Bevin - Division of Bioengineering, Massachusetts Institute of Technology (MIT) |
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Collection: Biology and Medicine |
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| 28 | AFM of p53-DNA complexes Scanning Microscopy Vol. 12, No. 3, 1998 (Pages 455-463) 0891-7035/98$5.00+.25 | ||
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Summary: measurements on RecA-DNA filaments. The unwinding of DNA by RecA was easily detected. We compared the stiffness... of p53F/DNA filaments with DNA and RecA-DNA using the ratio of the end-to-end distance (Le... .35 for RecA-DNA. Formation of filamentous complexes might play a role in the p53 regulation of DNA repair |
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Source: Lindsay, Stuart - Department of Physics and Astronomy, Arizona State University |
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Collection: Physics ; Biology and Medicine |
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| 29 | Plenty of room at the bottom Feynman questions on molecular biology (1959-1960) | ||
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Summary: #paired segments of tRNA ($% distinct& one for each AA) ha'e a spatia( structure simi(ar to A#DNA AA attached to 3... Catson-)ric9 aborted model #12;B 3/8 P Extinction . - . #12;P/ B /P i on tt n /P #12;ADNA Fran9linA-DNA... nm Watson-Crick B-DNA *phosphates outsi e+ #12;,3 Fran9lin, ,3 ;osling A-DNA )rystal fiber Revelation |
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Source: Muiño, Ricardo Díez - Unidad de Física de Materiales, Centro Mixto CSIC-UPV/EHU |
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Collection: Materials Science |
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| 30 | Spatially Continuous Change of Abstraction in MolecularVisualization | ||
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Summary: and Explicit Control of Abstraction Application: Local Emphasis & Detail for Molecular Structures (a) DNA |
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Source: |
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Collection: Computer Technologies and Information Sciences |
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| 31 | Brief Communication 1287 An empirical genetic assessment of the severity of the northern | ||
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Summary: ] and a two-step nested PCR, with stringent contamination controls at each stage. Ancient DNA (aDNA) has great... in the absence of primers was proposed by Stemmer [6], but to date not used for aDNA. We used this method... aDNA prod- ucts several times when direct PCR failed (Figure 1c). The existence of only two mt |
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Source: Dever, Jennifer A. - Biology Department, University of San Francisco |
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Collection: Biology and Medicine ; Environmental Sciences and Ecology |
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| 32 | Current Cancer Drug Targets, 2001, 1, 241-247 241 D-RNAi (Messenger RNA-antisense DNA Interference) as a Novel | ||
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Summary: posttranscriptional phenomenon of silencing gene expression by transfection of mRNA-aDNA hybrids, was originally... -RNAi occurs remain to be elucidated [1]. In addition, ectopic transfection of such an mRNA-aDNA hybrid... (mRNA- aDNA) interference] is a process that introduces a hybrid of mRNA and antisense DNA |
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Source: Chuong, Cheng-Ming - Laboratory of Tissue Development and Engineering & Department of Pathology, University of Southern California |
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Collection: Biology and Medicine |
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| 33 | Sodium and Chlorine Ions as Part of the DNA Solvation Shell Michael Feig and B. Montgomery Pettitt | ||
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Summary: structure close to A-DNA, the other for 12 ns with the AMBER force field that preferentially stabilizes B... and implications for the stabilization of A-DNA and B-DNA conformations are discussed. INTRODUCTION Solvent effects... concentrations favor the formation of A-DNA and Z-DNA over B-DNA (Saenger, 1984; Nishi- mura et al., ... |
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Source: Last, Robert L. - Department of Biochemistry and Molecular Biology, Michigan State University |
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Collection: Biology and Medicine |
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| 34 | A Chemical and Genetic Approach Together Define the Biological Consequences of 3-Methyladenine Lesions in the | ||
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Summary: important DNA lesion. The mammalian 3MeA DNA glycosylase (named Aag for * This work was supported... effects of 3MeA. We therefore cre- ated 3MeA DNA glycosylase-deficient cells by targeted homol- ogous... 3MeA DNA lesions almost exclusively (14, 15). Here we com- ... |
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Source: Engelward, Bevin - Division of Bioengineering, Massachusetts Institute of Technology (MIT) |
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Collection: Biology and Medicine |
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| 35 | Cell, Vol . 15, 1-14, September 1978, Copyright 1978 by M!T A Complete Immunoglobulin Gene Is Created by | ||
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Summary: region of a A, mRNA. Heteroduplex analysis of the three A, DNA clones revealed that Ig 303A DNA... of Ig 25A DNA . The sequence arrange- ment observed in the cloned DNA is the same... nontranslated DNA segment, and corresponds to the position of the J sequence on the ... |
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Source: Vosshall, Leslie - L:aboratory of Neurogenetics and Behavior, Rockefeller University |
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Collection: Biology and Medicine |
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| 36 | Repeat silica extraction: a simple technique for the removal of PCR inhibitors from DNA extracts | ||
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Summary: -extracted with ancient DNA (aDNA) and when present make the analysis of aDNA difficult, if not impossible. In this study... as well as successful removal of PCR inhibitors by use of a ``positive aDNA control,'' a test necessary... . All rights reserved. Keywords: Polymerase chain reaction inhibitor; Silica extraction; ... |
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Source: Kemp, Brian M. - Department of Anthropology & School of Biological Sciences, Washington State University |
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Collection: Biology and Medicine |
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| 37 | Accommodating the Effect of Ancient DNA Damage on Inferences of Demographic Histories | ||
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Summary: - spective to molecular evolutionary analyses. Large ancient DNA (aDNA) data sets spanning nearly 60... to and ubiquitous in aDNA data sets: postmor- tem DNA damage. They correctly argue that DNA damage, which manifests... removing all sites containing tran- sitions from alignments of aDNA sequences. Perhaps unsur- prisingly |
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Source: Australian National University, Centre for Macroevolution and Macroecology |
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Collection: Environmental Sciences and Ecology ; Biology and Medicine |
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| 38 | CLASS 4.3: 04/19/07 NUCLEOSOMES | ||
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Summary: and the nucleosome a. DNA on the nucleosome surface - The structure of DNA - DNase I and DNase II - Can only cut... of the core particle a. DNA - DNA = - Wrapped b. Proteins - H3 and H4 exist as - H2A and H2B exist #12 |
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Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas |
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Collection: Biology and Medicine |
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| 39 | Accommodating the Effect of Ancient DNA Damage on Inferences of Demographic Histories | ||
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Summary: - spective to molecular evolutionary analyses. Large ancient DNA (aDNA) data sets spanning nearly 60... to and ubiquitous in aDNA data sets: postmor- tem DNA damage. They correctly argue that DNA damage, which manifests... removing all sites containing tran- sitions from alignments of aDNA sequences. Perhaps unsur- prisingly |
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Source: Shapiro, Beth - Department of Biology, Pennsylvania State University |
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Collection: Biology and Medicine |
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| 40 | Oregon State University Sun Grant Western Regional Center | ||
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Summary: cloning efforts continue with the PHB (35S::ABC) pathway and a poplar senescence promoter (a DNA sequence |
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Source: Tullos, Desiree - Department of Biological and Ecological Engineering, Oregon State University |
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Collection: Environmental Sciences and Ecology |
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| 41 | Bias of Purine Stretches in Sequenced Chromosomes David Ussery | ||
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Summary: chromosome organisation. A-DNA / Z-DNA / DNA structures / complete genomes / Bacterial chromosomes... : A-DNA, B-DNA, and Z-DNA. In solution, for most DNA sequences the helical structure is a mixture... -B-form confor- mations. 1.1 Purine stretches and A-DNA Stretches of G's (or C's) longer than four nucleotides |
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Source: Ussery, David W. - Center for Biological Sequence Analysis, Institute of Biotechnology, Danmarks Tekniske Universitet |
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Collection: Biotechnology |
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| 42 | Updated 1/24/05 Calcium Phosphate Transfection page 1 of 1 Calcium Phosphate Transfection | ||
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Summary: components in the order specified (1 ml final volume): a. DNA __ µl (total 5 µg DNA) b. diH2O __ µl (445 µl |
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Source: Soderling, Scott - Department of Cell Biology, Duke University |
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Collection: Biology and Medicine |
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| 43 | Ancient DNA from giant extinct lemurs confirms single origin of Malagasy primates | ||
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Summary: ). This morphological relationship has also been confirmed by a study of ancient DNA (aDNA) (28). The relationships... , H5 has been the one most rigorously addressed with aDNA methods, although the results have been... contradictory. In one study, aDNA data provided support for the affinity of Megaladapis and Lepilemur (33 |
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Source: Karanth, K Praveen - Centre for Ecological Sciences, Indian Institute of Science, Bangalore; Yoder, Anne - Department of Biology, Duke University |
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Collection: Biology and Medicine ; Environmental Sciences and Ecology |
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| 44 | JOURNAL OF BACTERIOLOGY, July 2002, p. 38483855 Vol. 184, No. 14 0021-9193/02/$04.00 0 DOI: 10.1128/JB.184.14.38483855.2002 | ||
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Summary: - ies designed to understand the replication initiation process in M. tuberculosis revealed that the dnaA-dna... - culosis revealed that the dnaA-dnaN intergenic region is a hot spot for IS6110 insertion (7). While many... plasmids in an M. tuberculosis host (10, 17, 18). DNA fragments containing the dnaA-dnaN intergenic region |
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Source: Kramer, Fred - Public Health Research Center, International Center for Public Health, University of Medicine and Dentistry of New Jersey |
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Collection: Biology and Medicine |
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| 45 | Cell, Vol. 50, 841-846, September 11, 1987, Copyright 0 1987 by Cell Press The DNA-Binding Domains of the jun Oncoprotein and | ||
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Summary: of the LexA DNA-binding domain (open box), GCN4 (black box with transcriptional activation and DNA... proteins containing the LexA DNA- binding domain, the GCN4 transcriptional activation region... an in vivo DNA-binding assay for the jun region. The LexA DNA-binding ... |
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Source: |
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Collection: Biology and Medicine |
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| 46 | In: New Directions in Lemur Studies, edited by Rakotosamimanana et al., Kluwer Academic / Plenum Publishers, | ||
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Summary: ). The failures relate directly to the universal challenges of ancient DNA (aDNA) studies: aDNA is always... preservation (Lindahl, 1993). Thus far, there have been no repeatable studies to demonstrate that aDNA older... conditions, and good histological preservation, aDNA studies offer real hope for the ... |
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Source: Yoder, Anne - Department of Biology, Duke University |
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Collection: Environmental Sciences and Ecology |
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| 47 | Ancient DNA Chronology within Sediment Deposits: Are Paleobiological Reconstructions Possible and Is DNA Leaching a Factor? | ||
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Summary: reported the successful extraction of ancient DNA (aDNA) from both frozen and nonfrozen sediments (even... for vertical migration of aDNA across strata. To assess the extent of this problem, we extracted aDNA from... that the amount of sheep DNA decreased as the age of sediments increased. Our results suggest that sedimentary ... |
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Source: Shapiro, Beth - Department of Biology, Pennsylvania State University |
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Collection: Biology and Medicine |
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| 48 | Computers and Chemistry 26 (2002) 531541 Bias of purine stretches in sequenced chromosomes | ||
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Summary: in eukaryotic chromosome organisation. © 2002 Elsevier Science Ltd. All rights reserved. Keywords: A-DNA; Z... . Ussery et al. / Computers & Chemistry 26 (2002) 531541532 1.1. Purine stretches, A-DNA, and triple... forms a stable RNA double stranded molecule might also form a more stable A-DNA conformation (Antony et |
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Source: Ussery, David W. - Center for Biological Sequence Analysis, Institute of Biotechnology, Danmarks Tekniske Universitet |
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Collection: Biotechnology |
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| 49 | Modeling High-resolution Hydration Patterns in Correlation with DNA Sequence and Conformation | ||
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Summary: structure B-DNA conformations were found with the AMBER force-®eld and A-DNA conformations with CHARMM... TÁA base-pairs and around A-DNA as compared to B-DNA. This is partially offset by a lar- ger number... of water molecules in hydrophobic contact with DNA around TÁA base-pairs and around A-DNA. The numbers |
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Source: Last, Robert L. - Department of Biochemistry and Molecular Biology, Michigan State University |
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Collection: Biology and Medicine |
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| 50 | Biophysical Journal Volume 65 December 1993 2291-2303 A Systematic Method for Studying the Spatial Distribution of Water | ||
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Summary: neutron scattering study of an A-DNA fiber, which shows localized sites of preferred hydration... 2 Statistics of hydrated building blocks Conformational Trype A-DNA B-DNA Z-DNA TOTAL Guanine... are labeled "S" and those in the major groove "W." Hydration of bases Guanine A-DNA (Fig. 2 a, Table 3 |
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Source: Schneider, Bohdan - Institute of Biotechnology (Prague) |
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Collection: Biotechnology ; Materials Science |
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| 51 | K U R S A R A h D H O L Z W A R T H Backbone Conformational Change in the A -B Transition of | ||
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Summary: CH stretching motions. The band at 2890 is perpendicularly po- larized in A-DNA but parallel... perpendicular to parallel in the B -A transition, in qualitative accord with predictions from B- and A-DNA... O . 1 5 , 1 9 1 6 #12;A - B T R A N S I T I O N I N D N A A- DNA B-DNA DIRECTION OF HELIX FIGURE 1 |
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Source: Coley, Phyllis - Department of Biology, University of Utah |
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Collection: Environmental Sciences and Ecology |
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| 52 | GALLEX, a Measurement of Heterologous Association of Transmembrane Helices in a Biological Membrane* | ||
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Summary: helices in E. coli. Recently, an E. coli two-hybrid system based on the LexA DNA binding domain... ). LexA dimerization is required to repress transcription efficiently, and the LexA DNA binding domain... does not contribute to the dimerization of the protein. The discovery of LexA ... |
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Source: Engelman, Donald M.- Department of Molecular Biophysics and Biochemistry, Yale University |
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Collection: Biology and Medicine |
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| 53 | Proc. Natl. Acad. Sci. USA Vol. 94, pp. 29932998, April 1997 | ||
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Summary: . (a) B-DNA viewed perpendicularly to the helical axis. (b) B-DNA viewed along the 5 5 vector. (c) A-DNA... the glycosidic angle to much less negative values (approximately 115 ) than those found in A-DNA ( 160 ). [TA... ).] This observation led to the idea that TA-DNA might be produced from an intermediate A-DNA state (10), a ... |
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Source: Croquette, Vincent - Laboratoire de Physique Statistique, Département de Physique, École Normale Supérieure |
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Collection: Physics |
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| 54 | DOI: 10.1126/science.1146971 , 1927 (2007);317Science | ||
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Summary: greater analytical power, the degraded state of ancient DNA (aDNA) has prevented recovery and assembly... of the full genome by conventional genetic methods. Al- though aDNA has been applied to phylogenetic questions... technologies have begun to revolutionize aDNA research, enabling the application of whole- genome shotgun |
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Source: Miller, Webb - Departments of Biology & Computer Science and Engineering, Pennsylvania State University |
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Collection: Biology and Medicine ; Computer Technologies and Information Sciences |
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| 55 | Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA | ||
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Summary: sequence anal- yses suggested its inclusion in the RecA DnaB superfamily. A characteristic of the proteins... . These data support the inclusion of KaiC into the RecA DnaB superfamily and have important implications... -length KaiC from S. elongatus PCC 7942 (KaiC) is a member of the bacterial ... |
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Source: Cox, Michael M. - Department of Biochemistry, University of Wisconsin at Madison; Johnson, Carl H. - Department of Biological Sciences, Vanderbilt University |
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Collection: Biology and Medicine |
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| 56 | SydGreenberg/SciencePhotoLibrary By David Harel | ||
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Summary: to as time proceeds (Fig. 4). In contrast, in the less frequently occurring forms of DNA, i.e. A-DNA and Z... )b Height/ width Width/ offset A-DNA5,C B-DNA5, C Z-IDNA9 Z-IIDNA9 25.6 33.8 44.6 44.6 18.9 21.1 17.5 18... distant from the helix axis: A-DNA 05', B-DNA 02P, Z-I DNA C8(G), Z-II DNA O2P (C). b Offset determined |
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Source: Sussman, Joel L. - Department of Structural Biology, Weizmann Institute of Science |
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Collection: Biology and Medicine |
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| 57 | CINT Science Highlight September 22, 2010 NanoCluster Beacon detects specific nucleic acid target sequence for diagnostics | ||
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Summary: Nanotechnologies, a DOE Office of Basic Energy Sciences user facility at LANL. Reference: "A DNA-Silver Nanocluster |
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Source: Los Alamos National Laboratory, Theoretical Division, Condensed Matter and Statistical Physics Group |
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Collection: Materials Science |
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| 58 | Maximum A Posteriori Classification of DNA Structure from Sequence Information | ||
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Summary: for DNA helices are the two righthanded forms, ADNA and BDNA, and the lefthanded form Z... among the ADNA structures. BDNA structures had 16 crystal types, and ZDNA structures had 5 crystal... DNA there were three motifs, for ZDNA there were two and for ADNA there was one. 2 #12; 2.2 Data Representation |
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Source: Hirsh, Haym - Department of Electrical and Computer Engineering, Rutgers University |
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Collection: Computer Technologies and Information Sciences |
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| 59 | Characterization of Nonspecific Protein-DNA Interactions by H Paramagnetic Relaxation Enhancement | ||
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Summary: for comparison. We show that the 1HN-PRE profiles for the non- specific HMGB-1A/DNA and specific SRY... ) and rhodamine (acceptor) labels located at distinct 5-temini were measured on the free DNA, the HMGB-1A/ DNA... A/DNA complex with 100, 330, and 910 nM HMGB- 1A were 0.29 ( 0.01, 0.33 ( 0.01, and 0.35 ( 0 |
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Source: Clore, G. Marius - Laboratory of Chemical Physics. National Institutes of Health |
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Collection: Biology and Medicine |
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| 60 | Calculating Structures and Free Energies of Complex Molecules | ||
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Summary: , the structure remains A if simulated in 85% ethanol,14 so one has a stable A-DNA trajectory under... such conditions. One can then calculate Gh(B-DNA) and Gh(A-DNA) in continuum water using eq 1 using "snapshots... " from the trajectories in water and in 85% ethanol. As shown by Srinivasan et al.,10 Gh(B-DNA) - Gh(A-DNA |
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Source: Wang, Wei - Department of Chemistry and Biochemistry, University of California at San Diego |
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Collection: Chemistry ; Biology and Medicine |
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| 61 | American Journal of Botany 97(9): 15791584. 2010. American Journal of Botany 97(9): 15791584, 2010; http://www.amjbot.org/ 2010 Botanical Society of America | ||
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Summary: over long time scales. Ancient DNA (aDNA) analysis of plants, although not common in the literature... ; Noonan et al., 2006). Modern, intact DNA is heavily favored over fragmented aDNA during amplification, so... and se- quenced aDNA fragments from five samples of the remains found at the soil surface and from one |
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Source: Howat, Ian M. - Byrd Polar Research Center & School of Earth Sciences, Ohio State University |
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Collection: Geosciences |
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| 62 | Phylogeographic insights into cryptic glacial refugia | ||
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Summary: by standardising values to represent a single sample size, usually the smallest used. Ancient DNA (aDNA): DNA... the genealogical history of these populations in a spatial context. The recent development of ancient DNA (aDNA... [45]. aDNA studies in a range of organ- isms are now providing often surprising insights |
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Source: Provan, Jim - School of Biological Sciences, Queen's University Belfast |
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Collection: Environmental Sciences and Ecology |
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| 63 | Molecular basis for discriminating between normal and damaged bases by the human alkyladenine | ||
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Summary: dimensions of a 42.1 Å, b 57.3 Å, and c 125.5 Å. One AAG A-DNA complex (Mr 33,000) occupies... , initial models of the AAG A- DNA complexes were subjected to rigid-body and positional refinement in CNS... ; Table 1). The model of the E125Q AAG A-DNA complex consists of 200 residues, 24 nucleotides, 80 |
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Source: Lau, Albert Y. - Department of Biophysics and Biophysical Chemistry, Johns Hopkins University |
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Collection: Biology and Medicine |
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| 64 | Sex Identification of Children Sacrificed to the Ancient Aztec Rain Gods in Tlatelolco | ||
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Summary: ) coextracted with an- cient DNA (aDNA) and/or the degradation of aDNA (Pa¨a¨bo 1989) can cause incorrect sex... methods for extracting and analyzing aDNA (O'Rourke 2007). Sex identification of the victims of Tlatelolco... No 1214 Adult K1Y No E9-3 Adult K1Y NA No Note: Each aDNA extract is indicated by a ... |
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Source: Kemp, Brian M. - Department of Anthropology & School of Biological Sciences, Washington State University |
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Collection: Biology and Medicine |
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| 65 | BioMed Central Page 1 of 26 | ||
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Summary: structures confirmed the sequence dependent effects observed here [9-12]. A-DNA, which was first crystallised... -like to exclusively B-like, a few appeared to show features interme- diate between A-DNA and B-DNA, to a mixture... -like confor- mation in its free form [33,34], inclusion of A-DNA oligomer structures also in the ... |
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Source: Bansal, Manju - Molecular Biophysics Unit, Indian Institute of Science, Bangalore |
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Collection: Biology and Medicine |
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| 66 | Questions in Cuban and CaribbeanQuestions in Cuban and Caribbean Archaeology:Archaeology | ||
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Summary: Identity #12;Evidence · People Skeletal analysis aDNA Diet Isotopes Plant and Animal resources... (direct bone dates) For Canimar Abajo For Pinar del Rio and other provinces · Intensive aDNA typing |
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Source: Martin, Jeff - Kellogg Radiation Laboratory, California Institute of Technology |
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Collection: Physics |
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| 67 | "Initiative for the Promotion of Young Scientists' Independent Research-developing the next generation of leaders at the University of Tsukuba" | ||
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Summary: p sah e ylbmessA dna ylbmessasid fo eht suloelcun ylbmessADisassembly Ver.2 #12;2 TARA D H #12;3 #12... orP m pate hase pateM hase A pan h sa e G1 p sah e ylbmessA dna ylbmessasid fo eht suloelcun ylbmess |
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Source: Kaliszyk, Cezary - Department of Computer Science, University of Tsukuba |
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Collection: Computer Technologies and Information Sciences |
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| 68 | Copyright 2006 by the Genetics Society of America DOI: 10.1534/genetics.106.057349 | ||
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Summary: leaching of free DNA molecules between permafrost layers. THE successful retrieval of ancient DNA (aDNA) se... -life of amplifiable aDNA (e.g., Pa¨a¨bo and Wilson 1991; Poinar et al. 1996, 2002; Marota et al. 2002). However... address the role of strand breaks vs. crosslinks in limiting the am- plification of aDNA molecules ... |
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|
Source: Wiuf, Carsten - Bioinformatics Research Center, University of Aarhus |
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Collection: Biotechnology |
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| 69 | Contributions to Zoology, 76 (2) 87-94 (2007) Using ancient DNA techniques to identify the origin of unprovenanced museum specimens, | ||
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Summary: it was still alive. To test this hypothesis, we used ancient DNA(aDNA) techniques to extract and sequence... , the potential for aDNA techniques to iden- tify the origins of previously unassigned museum specimens continues... techniques have made it possible to amplify short fragments of ancient DNA (aDNA), normally mitochondrial ... |
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|
Source: Shapiro, Beth - Department of Biology, Pennsylvania State University |
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Collection: Biology and Medicine |
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| 70 | Proc. Natl. Acad. Sci. USA Vol. 95, pp. 85268531, July 1998 | ||
|
Summary: -specific DNA-binding protein, binds to TnpA and stabilizes the TnpADNA complex. The high redundancy of Tnp... is not cooperative, formation of intermolecular TnpADNA complexes exhibits cooperativity. We also show that Tnp... of Intermolecular TnpADNA Com- plexes. Complexes of progressively larger size are observed as the ... |
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|
Source: Schläppi, Michael - Biological Sciences Department,, Marquette University |
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Collection: Biology and Medicine |
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| 71 | Jan P.Erzberger, Michelle M.Pirruccello and James M.Berger1 | ||
|
Summary: be conserved across bacterial, archaeal and eukaryotic domains of life. Keywords: bacteria/DnaA/DNA replication... to the HTH and the basic loop motifs are high- lighted in red. (C) RIBBONS model of the DnaA±DNA complex... ); Sutton and Kaguni (1997b) G426S A355 N/A DNA-binding defect Carr and Kaguni (1996) ... |
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|
Source: Berger, James M. - Department of Molecular and Cell Biology, University of California at Berkeley |
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Collection: Biology and Medicine |
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| 72 | Ancient DNA typing of archaeological pig remains corroborates historical records James Haile a,*, Greger Larson b | ||
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Summary: species must be available. Mitochondrial DNA (mtDNA) is favoured over nuclear DNA for aDNA studies because... -mortem DNA decay (Hoss et al., 1996; Smith et al., 2003) and the difficulty of amplifying long tracts of aDNA... these conditions, the most common genetic target for aDNA prov- enancing is the hypervariable region within |
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|
Source: Shapiro, Beth - Department of Biology, Pennsylvania State University |
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Collection: Biology and Medicine |
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| 73 | Genetic isolation of a now extinct population of bottlenose dolphins (Tursiops truncatus) | ||
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Summary: populations. Here, we use ancient DNA (aDNA) to assess the status of a historicalbottlenose dolphin (Tursiops... extraction and amplification All aDNA extractions and polymerase chain reaction (PCR) set-ups were carried... out in a dedicated aDNA laboratory where no work on modern or post-PCR DNA was carried out |
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|
Source: Aberdeen, University of - Lighthouse Field Station |
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Collection: Environmental Sciences and Ecology |
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| 74 | Z .Mutation Research 460 2000 201210 www.elsevier.comrlocaterdnarepair | ||
|
Summary: -glycosylic bond. In contrast to AAG, the structure of the AlkADNA complex suggests that AlkA substrate... to deprotonate the bound water for a backside attack of Z .the N-glycosylic bond. In the AlkA-DNA complex b the 1... cleft and it contains the catalytically essential Asp238. The recent crystal structure of an AlkADNA |
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|
Source: Lau, Albert Y. - Department of Biophysics and Biophysical Chemistry, Johns Hopkins University |
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Collection: Biology and Medicine |
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| 75 | Rapid Detection of Protein Tyrosine Kinase Activity in Recombinant Yeast Expressing a Universal Substrate | ||
|
Summary: A protein component forms strong noncovalent interactions with LexA DNA sites upstream of the reporter gene... and fused to the LexA DNA binding domain (DBD); and (3) the Grb2 SH2 domain fused to the B42 activation... sequence were expressed fused to green fluorescent protein (GFP), which was linked to the ... |
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|
Source: Peterson, Blake R. - Department of Medicinal Chemistry, University of Kansas |
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|
Collection: Chemistry |
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| 76 | 1. %#a [W#l%,%%-*, ^; Single-choice questions ,total = 22% ] 1.Which of the following reagents are components of LB medium? | ||
|
Summary: . The probe used in Far Western blot is (A). DNA (B).RNA (C). protein @). antibody #12;24. Which... in replicating the telomeric repeats (telomere) of eucaryotic chromosomes? (A). DNA-dependentDNA polymerase (B... -dependentRNA polymerase 111 #12;32.The existenceof Okazaki fragments demonstrate ... |
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|
Source: Huang, Haimei - Department of Life Science, National Tsing Hua University |
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Collection: Biology and Medicine |
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| 77 | Origins of Specificity in Protein-DNA Recognition | ||
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Summary: References AT rich B-DNA 72, 114 GC rich A-DNA at low humidity 76, 77, 188 A-tract B -DNA, narrow minor... groove, bending, rigid for 4 bp 8183, 86, 217 TATA box High deformability, A-DNA, TA-DNA upon TBP... shape, e.g., DNA bending, A-DNA, and Z-DNA). In addition, although some DNA sequences do not pro- duce |
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|
Source: Rohs, Remo - Department of Biological Sciences, University of Southern California |
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Collection: Biology and Medicine |
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| 78 | Particulate Air Pollution has a Metal Mediated Cytotoxic Effect Detected by Whole Cell Bacterial Reporters | ||
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Summary: /Arsenite zntA Excess Zn(II), Cd(II), and Pb(II) recA DNA damage cydA Respiratory Inhibition |
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Source: Dov, Avigad - Institute of Earth Sciences, Hebrew University of Jerusalem |
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Collection: Geosciences |
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| 79 | Structure and Function of Fusion Gene Products in | ||
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Summary: tissues, frequently lost in tumors Pointed ETSN- -C Dimerization Recruiting Sin3A DNA-binding Protein |
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|
Source: Spang, Rainer - Computational Molecular Biology Group, Max-Planck-Institut für molekulare Genetik |
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Collection: Computer Technologies and Information Sciences ; Biotechnology ; Biology and Medicine |
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| 80 | Lecture 3 outline -Nucleic Acids, DNA & RNA I. Nucleic Acids made up of nucleotide monomers | ||
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Summary: = Pyrmidines are = DNA A. DNA secondary structure brief history 1. DNA was made up of nucleotides |
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|
Source: Dever, Jennifer A. - Biology Department, University of San Francisco |
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Collection: Biology and Medicine ; Environmental Sciences and Ecology |
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| 81 | CLASS 4.6: 05/01/07 GENETIC ENGINEERING | ||
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Summary: ways that DNA can be cloned (amplified) i. Place DNA #12;2 ii. Use - Need - Must - Use a). DNA b |
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Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas |
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Collection: Biology and Medicine |
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| 82 | High-Throughput Compound Screening and Discovery in an Academic Setting | ||
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Summary: is very standard--a DNA template and a primer. The tech- nology is essentially a generic sequencer |
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|
Source: Li, Min - Department of Neuroscience, Johns Hopkins University |
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Collection: Biology and Medicine |
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| 83 | Problem Set 7 7. Okazaki fragments are approximately how many bases in length? | ||
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Summary: replication? A. DNA primase B. single-stranded binding protein C. RNase H D. DNA gyrase E. DNA ligase REF: 7 |
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|
Source: Gage, Daniel J. - Department of Molecular and Cell Biology, University of Connecticut |
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Collection: Biology and Medicine |
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| 84 | 12. How is sigma32 degradation controlled by temperature and why is this important to the cell? | ||
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Summary: __________ the promoter. A) DNA / toward B) RNA / toward C) DNA / away from D) RNA / away from 29) In all cells a gene |
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|
Source: Gage, Daniel J. - Department of Molecular and Cell Biology, University of Connecticut |
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Collection: Biology and Medicine |
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| 85 | CLASS 3.3: 03/22/07 TRANSPOSABLE ELEMENTS | ||
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Summary: = i. Consensus ii. DNA iii. Protein - Explains why 3. Consequences of transposition a. DNA |
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|
Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas |
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Collection: Biology and Medicine |
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| 86 | CLASS 4.2: 04/17/07 CHROMOSOMES | ||
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Summary: between DNA and protein 3. Eukaryotic packaging a. DNA packaging - A metaphase chromosome - Consists |
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|
Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas |
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Collection: Biology and Medicine |
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| 87 | A. Transcription Factors: 1. Classes of transcription factors | ||
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Summary: regulators - Make 2. Activators have modular domains a. DNA-binding domain = b. Protein-binding domains |
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Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas |
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Collection: Biology and Medicine |
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| 88 | CLASS 1.1: 01/18/07 DNA STRUCTURE | ||
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Summary: 1 CLASS 1.1: 01/18/07 DNA STRUCTURE: A. DNA is the Hereditary Material: 1. Introduction a |
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Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas |
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Collection: Biology and Medicine |
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| 89 | Tomoatsu Kaneko & Elisabeta Karl (Nor's lab) Lentiviral Infection of Endothelial Cells (HDMEC) | ||
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Summary: ). Solutions for CaP04 transfection Solution A: DNA CaCl2 solution 4 µg DNA construct (and GFP as your positive |
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|
Source: Iruela-Arispe, Luisa - Department of Molecular, Cell, and Developmental Biology, University of California at Los Angeles |
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Collection: Biology and Medicine |
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| 90 | Structure, Vol. 9, 105114, February, 2001, 2001 Elsevier Science Ltd. All rights reserved. PII S0969-2126(01)00572-X Computational Modeling Predicts the Structure | ||
|
Summary: . Our model thus efficiently integrates vectors {aDNA i , bDNA i , cDNA i } (see Figure 1), to represent... of a biomolecule into an accurate at ri and the linker vertex ri 1. The calculation of {aDNA i , bDNA i , cDNA i... that are {aDNA i , bDNA i , cDNA i }, and the angles { i, i, i} transform known to be associated with ... |
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|
Source: Schlick, Tamar - Department of Chemistry, New York University |
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Collection: Chemistry |
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| 91 | Forensic Analytical Sciences, Hayward, CA 94545. Department of Anthropology and the School of Biological Sciences, Washington State University, Pullman, | ||
|
Summary: pressurized laboratory solely used for ancient DNA (aDNA) analysis; use of sterile and dis- posable labware... not followed all the recommendations of Cooper and Poinar (2000) to ensure the authenticity of the aDNA in our... ) on the remains from which DNA was extracted and did not clone aDNA extracted from the samples. Because |
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Source: Kemp, Brian M. - Department of Anthropology & School of Biological Sciences, Washington State University |
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Collection: Biology and Medicine |
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| 92 | SAMENVATTING Het wordt algemeen aangenomen dat de instandhouding van de integriteit van het genoom | ||
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Summary: A mutant, wat suggereert dat RecQ14A DNA herrangschikkingen onderdrukt. De recQ14A mutant werd... suggereren dat RecQ14A DNA schade zou kunnen herstellen op een manier waarbij verhoogde recombinatie geen rol |
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|
Source: Groningen, Rijksuniversiteit - Centre for Ecological and Evolutionary Studies, Department of Marine Benthic Ecology and Evolution, |
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Collection: Biology and Medicine ; Environmental Sciences and Ecology |
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| 93 | 1372 Macromolecules 1996,29, 1372-1373 Dynamical Scaling of DNA Diffusion | ||
|
Summary: times longer than A-DNA were generated by concatenating A-DNA molecules using T4 DNA ligase (NEB |
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|
Source: Perkins, Thomas - JILA & Department of Molecular, Cellular, and Developmental Biology, University of Colorado at Boulder; Smith, Douglas E. - Department of Physics, University of California at San Diego |
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Collection: Biology and Medicine ; Biotechnology ; Physics |
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| 94 | . L . GCN4,the YeostVersion Kevin Struhl | ||
|
Summary: the entirejun codingregion is fuseddirectly to the LexA DNA-binding domain can functionally replace GCN4... .8 In addition, LexA- Jun activatestranscription through the heterologous LexA DNA |
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|
Source: |
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Collection: Biology and Medicine |
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| 95 | Stanyon Supplemetary Material Page 1 of 10 Stanyon, C.A., Limjindaporn, T., and Finley, Jr., R.L. Simultaneous transfer of open reading | ||
|
Summary: A interacts with AnsA, Dna A interacts with DnaA, and Cj0036 interacts with Cj0036. The strengths... SH18-34, and one of four plasmids directing the synthesis of LexA fused to C.jejuni proteins, CheY, AnsA... , DnaA, or Cj0036. The BD strains were mated with five AD strains containing plasmids directing |
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|
Source: Finley Jr., Russell L. - Center for Molecular Medicine and Genetics, Wayne State University |
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Collection: Biology and Medicine |
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| 96 | 5978 Biochemistry 1989, 28, 5978-5984 Lumrey, R., & Rajender, S. (1970) Biopolymers 9, | ||
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Summary: than 0.06 A). For each data set, six calculations were carried out, three starting from classical A-DNA... by starting from classical A-DNA and classical B-DNA. The atomic rms difference between these two starting... .003 v) ( g ) (A-DNA),~ -387 -507 -7 5 0.093 (B-DNA),~ -387 -501 -9 3 0.097 'There are 30 hydrogen |
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|
Source: Clore, G. Marius - Laboratory of Chemical Physics. National Institutes of Health |
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Collection: Biology and Medicine |
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| 97 | I. Questions (50%) 1. $$%flA&{+BDNAeg#Ja@$fl,$,&&&A-TbG$nC1 f i R N A ; I e T Z k & U & | ||
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Summary: &, AUGC fl?y$$ DNA 4 ~ ~ ~ + @ & & # J 3 $ I&+J)o (15%) 2. 4t$+S$aDNA (recombination DNA) i+i @ $&$j&3%h... of the following is required for the synthesis of DNA during replication? (A) DNA polymerase (B) dNTPs (C |
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|
Source: Huang, Haimei - Department of Life Science, National Tsing Hua University |
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|
Collection: Biology and Medicine |
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| 98 | The Stability of Transmembrane Helix Interactions Measured in a Biological Membrane | ||
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Summary: the expression of b-galactosidase, and binding of the homo-dimeric LexA DNA-binding domain represses... . After membrane integration of the proteins, dimerization of the LexA DNA-binding domain is mediated... by oligomer- ization of the transmembrane helices. The homo-dimeric LexA ... |
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|
Source: Engelman, Donald M.- Department of Molecular Biophysics and Biochemistry, Yale University |
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Collection: Biology and Medicine |
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| 99 | Nature Methods Magnetic torque tweezers: measuring torsional stiffness in DNA | ||
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Summary: Nature Methods Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA... . Supplementary Figure 13 Force-extension measurements for RecA-DNA heteroduplex filaments. Supplementary Figure... -extension measurements for RecA-DNA heteroduplex filaments. Magnet tweezers measurements of the force-extension behavior |
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|
Source: Dekker, Nynke - Kavli Institute of Nanoscience, Technische Universiteit Delft |
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Collection: Biology and Medicine |
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| 100 | Thomas Vigdal Biochem 218 | ||
|
Summary: the propensity of DNA to form an A-DNA like double helix (Ivanov and Minchenkova, 1995). A-DNA has a wide... a propensity to form A-DNA either across the whole region of insertion (1A and 1C) or on one side of it (1B... into A-DNA like regions. If transposase prefers DNA in which it can make easy hydrogen ... |
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|
Source: Bejerano, Gill - Departments of Computer Science & Developmental Biology, Stanford University |
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|
Collection: Computer Technologies and Information Sciences ; Biology and Medicine |
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