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Sample search results for: a-dna

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1 Ancient DNA Laboratory Guidelines Room 78, University of Michigan Ruthvens Museums
 

Summary:  concern regarding the University of Michigan Museum of Zoology's Ancient DNA (aDNA) Laboratory... contamination of the aDNA Laboratory is to keep entry to a minimum. Doors should be locked at all times... . Janitorial staff will not enter these rooms; neither should you, unless you are actively processing aDNA

  

Source: Cortes-Ortiz, Liliana - Department of Ecology and Evolutionary Biology, University of Michigan

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine

 
2 758 nature structural biology volume 7 number 9 september 2000 The extended and eccentric
 

Summary:  conformation gives the characteristic deep major groove and shallow minor groove of A-DNA. Also, if allowed... to crystallize for a period of time longer than that yielding E-DNA, the methylated sequence forms standard A-DNA... , suggesting that E-DNA is a kinetically trapped intermediate in the transition to A-DNA. Thus, the ...

  

Source: Eichman, Brandt F. - Department of Biological Sciences, Vanderbilt University

 

Collection: Biology and Medicine

 
3 Note: this is an expanded version of the entry entitled "Ancient DNA" in the 2002 McGraw-Hill, Yearbook of Science and Technology, pp. 9-14.
 

Summary:  from long-gone sources has typically been dubbed the study of ancient DNA (or aDNA for short... DNA)-like nuclear pseudogenes. With the publication of these incriminating studies, a pall fell over the aDNA... . Why is aDNA so Difficult? The challenges of aDNA studies can be summarized as 1) poor DNA quality

  

Source: Yoder, Anne - Department of Biology, Duke University

 

Collection: Environmental Sciences and Ecology

 
4 Letter to the Editor Ancient DNA Methodology: Thoughts from Brian M. Kemp and
 

Summary:  to future discoveries and progression of the ancient DNA (aDNA) field as a whole. Reviewer 1 refers to six... cannot alone authenticate aDNA results. Conversely, (2) failing to follow all these standards does... 305 times, making it a classic for the aDNA field (website accessed December 22, 2009). A few years

  

Source: Kemp, Brian M. - Department of Anthropology & School of Biological Sciences, Washington State University

 

Collection: Biology and Medicine

 
5 J. Mol. Biol. (1986) 188, 455-475 Structure Refinement of Oligonucleotides by Molecular
 

Summary:  of distance restraints taken from classical B-DNA to a simulation starting off from A-DNA and vice versa... different B-DNA structures, the method was incapable of converging to such a B-DNA structure starting from A-DNA... the method with an idealized set of 192 distance restraints taken from classical B-DNA and A-DNA by ...

  

Source: Clore, G. Marius - Laboratory of Chemical Physics. National Institutes of Health

 

Collection: Biology and Medicine

 
6 Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis
 

Summary:  , 2006 ABSTRACT Although ancient DNA (aDNA) miscoding lesions have been studied since the earliest days... miscoding lesions constitute true aDNA damage as opposed to PCR polymerase amplification error. Furthermore... characterization of the aDNA damage behind the observed phenotypes. Through compa- rative analyses on 390 965 bp

  

Source: Wiuf, Carsten - Bioinformatics Research Center, University of Aarhus

 

Collection: Biotechnology

 
7 Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis
 

Summary:  , 2006 ABSTRACT Although ancient DNA (aDNA) miscoding lesions have been studied since the earliest days... miscoding lesions constitute true aDNA damage as opposed to PCR polymerase amplification error. Furthermore... characterization of the aDNA damage behind the observed phenotypes. Through compa- rative analyses on 390 965 bp

  

Source: Miller, Webb - Departments of Biology & Computer Science and Engineering, Pennsylvania State University

 

Collection: Biology and Medicine ; Computer Technologies and Information Sciences

 
8 3-Methyladenine DNA glycosylases: structure,
 

Summary:  deficient in 3-MeA DNA glycosylase activity. 3-MeA DNA glycosylases excise a wide range of substrates DNA... glycosylases that remove 3-MeA DNA lesions are found in bacteria, yeast, plants, rodents, and humans. The wide... - spread occurrence of this DNA repair ...

  

Source: Lau, Albert Y. - Department of Biophysics and Biophysical Chemistry, Johns Hopkins University

 

Collection: Biology and Medicine

 
9 Ji-Long Liu / Journal of Genetics and Genomics 36 (2009) 1 Fig. 1. An antibody recognizes sperm tails in Drosophila melanogaster. A-C: testis from a third-instar larva. Cephalad pole to the left. A: DNA staining
 

Summary:  and Genomics 36 (2009) Fig. 2. Macro- and micro-cytoophidia in an egg chamber. A: DNA, stained with Hoechst... in an egg chamber. A: DNA, stained with Hoechst 33342. B: CTP synthase. Note that the gain was adjusted so... tails in Drosophila melanogaster. A-C: testis from a third-instar larva. Cephalad pole ...

  

Source: 

 

Collection: Biology and Medicine

 
10 Bayesian Estimation of Sequence Damage in Ancient DNA Simon Y. W. Ho,* Tim H. Heupink,* Andrew Rambaut, and Beth Shapiro
 

Summary:  , can lead to the inclusion of spurious additional mutations in ancient DNA (aDNA) data sets. This has... is then applied to 13 aDNA data sets. The amount of damage in these data sets is shown to be significant but low... high rates of mutation previously estimated from aDNA data are not entirely an artifact of sequence

  

Source: Shapiro, Beth - Department of Biology, Pennsylvania State University

 

Collection: Biology and Medicine

 
11 BIOLOGICAL FRAMEWORKS FOR ENGINEERS Session #5a [nm: Protein Form]
 

Summary:  modifications #12;ME498/599 WORKSHEET: DNA Sequence to Protein Function What is the relationship between: a. DNA

  

Source: Sniadecki, Nathan J. - Department of Mechanical Engineering, University of Washington at Seattle

 

Collection: Biology and Medicine ; Engineering

 
12 Bayesian Inference of Errors in Ancient DNA Caused by Postmortem Degradation
 

Summary:  , University of California, Davis Methods for extracting and amplifying sequences using ancient DNA (aDNA) can... is developed for predicting errors in aDNA sequences caused by such processes. In addition to the canonical DNA... via postmortem degradation of the aDNA sequences. A computer program, BYPASSR-degr, was developed

  

Source: 

 

Collection: Biology and Medicine

 
13 BULLETIN OF MARINE SCIENCE, 81(3): 351360, 2007 351Bulletin of Marine Science
 

Summary:  applications of ancient DNA (aDNA) techniques have been real- ized relatively recently, and have been... and mammals, we have produced a method for extracting and amplifying aDNA from sub-fossil (not embedded... fossil and live specimens resulted in clustering by species, demonstrating the validity of this new aDNA

  

Source: Adkins, Jess F. - Division of Geological and Planetary Sciences, California Institute of Technology

 

Collection: Environmental Sciences and Ecology ; Geosciences

 
14 22 2 3
 

Summary:  . EMBO J. (2002) 21, 6419-28 Double-strand DNA beaks recruit the centromeric histone CENP-A DNA... DNA DNA DNA DNA DNA DNA H3CENP-A #12;13 (M ) CENP-A DNA DNA DNA... () CENP-A DNA DNA CENP-A H2B, H3.1 ...

  

Source: Takada, Shoji - Department of Biophysics, Kyoto University

 

Collection: Chemistry ; Biotechnology

 
15 2003 The Society for the Study of Evolution. All rights reserved. Evolution, 57(8), 2003, pp. 19311946
 

Summary:  DNA) and in autosomal DNA (aDNA) in the same individuals, even though these genomes are partially co... on Sulawesi macaque mtDNA and aDNA by comparing evolution, phylogeography, and population subdivision of each... between populations within species but in aDNA most variation is partitioned within populations. That mt

  

Source: Evans, Ben J. - Department of Biology, McMaster University

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine

 
16 Engineered polymerases amplify the potential of ancient DNA
 

Summary:  amplification of DNA from an `ancient' specimen 25 years ago [1], `ancient DNA' (aDNA) has attracted interest... -throughput sequencing-by- synthesis platforms, most aDNA studies relied on the amplification of selected sequence... would have a considerable beneficial impact on aDNA research. Making more from nothing: a polymerase

  

Source: Shapiro, Beth - Department of Biology, Pennsylvania State University

 

Collection: Biology and Medicine

 
17 Autonomous DNA Walking Devices Peng Yin*, Andrew J. Turberfield, Hao Yan*, John H. Reif*
 

Summary:  *C B + C* C*D C + D* D*A D + A* DNA Walker: Operation 24 B C Track Anchorage A Walker * AD #12;· Valid... *B A + B* B*C B + C* C*D C + D* D*A D + A* DNA Walker: Operation 27 A*B A PflM I C D #12;· Valid... *B A + B* B*C B + C* C*D C + D* D*A D + A* DNA Walker: ...

  

Source: Reif, John H. - Department of Computer Science, Duke University

 

Collection: Computer Technologies and Information Sciences

 
18 Copyright 2010 by the Genetics Society of America DOI: 10.1534/genetics.110.116228
 

Summary:  chromosomes and mitochondrial DNA (mtDNA) differ in copy number from autosomal DNA (aDNA): both sexes have two... polymorphism at mtDNA, aDNA, the X chromosome (xDNA), and the Y chromosome (yDNA) (Hedrick 2007). The effective... @mcmaster.ca Genetics 185: 923­937 ( July 2010) #12;number of offspring with a mean of two offspring per individual, ...

  

Source: Evans, Ben J. - Department of Biology, McMaster University

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine

 
19 Ancient plant DNA in archaeobotany Angela Schlumbaum Marrie Tensen
 

Summary:  may be gained from ancient DNA (aDNA) research. 1. Archaeobotanical reconstructions depend... be an extinct wheat cultivar or even-- as suggested by aDNA--a wheat related to Triticum timopheevii with the G... et al. 1989). aDNA research can clarify such cases by investigation of genetic diversity within

  

Source: Jacomet, Stefanie - Institut für prähistorische und naturwissenschaftliche Archäologie, Universität Basel

 

Collection: Geosciences ; Biology and Medicine

 
20 CLASS 2.6: 03/01/07 DNA REPLICATION
 

Summary:  1 CLASS 2.6: 03/01/07 DNA REPLICATION A. DNA Polymerases: 1. General characteristics - Not every... by #12;2 - Some DNA pols function - Others are - Are 5 DNA pols in E. coli a. DNA pol I - involved in b... replication is faithful ~ - Expect error rate ~ a. DNA pols ...

  

Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas

 

Collection: Biology and Medicine


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21 23 2 53 5
 

Summary:  ··········································5 ····························································6 Cenp-A DNA... 2. 3. 23 1 20 4. (a) (b) 5. 2 22 12 17 #12;9 Cenp-A DNA H3 ...

  

Source: Takada, Shoji - Department of Biophysics, Kyoto University

 

Collection: Chemistry ; Biotechnology

 
22 Anne D. Yoder, Director of Duke Lemur Center and Professor of Biology and
 

Summary:  .. "Geographic origins of aDNA samples and prospects for aDNA studies in the tropics.." Molecular Markers, PCR

  

Source: Zhou, Pei - Departments of Chemistry & Biochemistry, Duke University

 

Collection: Chemistry ; Biology and Medicine

 
23 Kraftfelder Bindungen, Winkel
 

Summary:  -bindende Wechselwirkungen 4 #12;5 #12;Periodische Randbedingungen 6 #12;DNA A-DNA vs. B-DNA 7 #12;DNA A-DNA vs. B-DNA 8 #12

  

Source: Hartke, Bernd - Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel

 

Collection: Chemistry

 
24 Proc. Natl. Acad. Sci. USA Vol. 94, pp. 1308713092, November 1997
 

Summary:  , and approved September 30, 1997 (received for review August 8, 1997) ABSTRACT 3-methyladenine (3MeA) DNA... the generation of mice deficient in the 3MeA DNA glycosylase encoded by the Aag (Mpg) gene. Alkyladenine DNA... glycosylase turns out to be the major DNA glycosylase not only for the cytotoxic ...

  

Source: Engelward, Bevin - Division of Bioengineering, Massachusetts Institute of Technology (MIT)

 

Collection: Biology and Medicine

 
25 Hydration of the Phosphate Group in Double-Helical DNA Bohdan Schneider,* Ketan Patel,#
 

Summary:  around the phosphates have not been analyzed as thoroughly as base hydration. Early studies of A-DNA... groups in the major groove of A-DNA. Several analyses of crystal structures have revealed re- peating... . In A-DNA, adenine and guanine produce similar water distributions and were therefore combined into one

  

Source: Schneider, Bohdan - Institute of Biotechnology (Prague)

 

Collection: Biotechnology ; Materials Science

 
26 To Clone or Not To Clone: Method Analysis for Retrieving Consensus Sequences In Ancient DNA Samples
 

Summary:  Abstract The challenges associated with the retrieval and authentication of ancient DNA (aDNA) evidence... ``modern'' DNA sources. The necessity for authentication of results has led many aDNA researchers to adopt... methods considered to be ``gold standards'' in the field, including cloning aDNA amplicons as opposed

  

Source: Kemp, Brian M. - Department of Anthropology & School of Biological Sciences, Washington State University

 

Collection: Biology and Medicine

 
27 The EMBO Journal vol.15 no.4 pp.945-952, 1996 Repair-deficient 3-methyladenine DNA glycosylase
 

Summary:  Corresponding author In Escherichia coli, the repair of 3-methyladenine (3MeA) DNA lesions prevents alkylation... previously isolated and characterized a mouse 3MeA DNA glycosylase cDNA (Aag) that provides resistance... null cells have no detectable Aag transcripts or 3MeA ...

  

Source: Engelward, Bevin - Division of Bioengineering, Massachusetts Institute of Technology (MIT)

 

Collection: Biology and Medicine

 
28 AFM of p53-DNA complexes Scanning Microscopy Vol. 12, No. 3, 1998 (Pages 455-463) 0891-7035/98$5.00+.25
 

Summary:  measurements on RecA-DNA filaments. The unwinding of DNA by RecA was easily detected. We compared the stiffness... of p53F/DNA filaments with DNA and RecA-DNA using the ratio of the end-to-end distance (Le... .35 for RecA-DNA. Formation of filamentous complexes might play a role in the p53 regulation of DNA repair

  

Source: Lindsay, Stuart - Department of Physics and Astronomy, Arizona State University

 

Collection: Physics ; Biology and Medicine

 
29 Plenty of room at the bottom Feynman questions on molecular biology (1959-1960)
 

Summary:  #paired segments of tRNA ($% distinct& one for each AA) ha'e a spatia( structure simi(ar to A#DNA AA attached to 3... Catson-)ric9 aborted model #12;B 3/8 P Extinction . - . #12;P/ B /P i on tt n /P #12;ADNA Fran9linA-DNA... nm Watson-Crick B-DNA *phosphates outsi e+ #12;,3 Fran9lin, ,3 ;osling A-DNA )rystal fiber Revelation

  

Source: Muiño, Ricardo Díez - Unidad de Física de Materiales, Centro Mixto CSIC-UPV/EHU

 

Collection: Materials Science

 
30 Spatially Continuous Change of Abstraction in MolecularVisualization
 

Summary:  and Explicit Control of Abstraction Application: Local Emphasis & Detail for Molecular Structures (a) DNA

  

Source: 

 

Collection: Computer Technologies and Information Sciences

 
31 Brief Communication 1287 An empirical genetic assessment of the severity of the northern
 

Summary:  ] and a two-step nested PCR, with stringent contamination controls at each stage. Ancient DNA (aDNA) has great... in the absence of primers was proposed by Stemmer [6], but to date not used for aDNA. We used this method... aDNA prod- ucts several times when direct PCR failed (Figure 1c). The existence of only two mt

  

Source: Dever, Jennifer A. - Biology Department, University of San Francisco

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology

 
32 Current Cancer Drug Targets, 2001, 1, 241-247 241 D-RNAi (Messenger RNA-antisense DNA Interference) as a Novel
 

Summary:  posttranscriptional phenomenon of silencing gene expression by transfection of mRNA-aDNA hybrids, was originally... -RNAi occurs remain to be elucidated [1]. In addition, ectopic transfection of such an mRNA-aDNA hybrid... (mRNA- aDNA) interference] is a process that introduces a hybrid of mRNA and antisense DNA

  

Source: Chuong, Cheng-Ming - Laboratory of Tissue Development and Engineering & Department of Pathology, University of Southern California

 

Collection: Biology and Medicine

 
33 Sodium and Chlorine Ions as Part of the DNA Solvation Shell Michael Feig and B. Montgomery Pettitt
 

Summary:  structure close to A-DNA, the other for 12 ns with the AMBER force field that preferentially stabilizes B... and implications for the stabilization of A-DNA and B-DNA conformations are discussed. INTRODUCTION Solvent effects... concentrations favor the formation of A-DNA and Z-DNA over B-DNA (Saenger, 1984; Nishi- mura et al., ...

  

Source: Last, Robert L. - Department of Biochemistry and Molecular Biology, Michigan State University

 

Collection: Biology and Medicine

 
34 A Chemical and Genetic Approach Together Define the Biological Consequences of 3-Methyladenine Lesions in the
 

Summary:  important DNA lesion. The mammalian 3MeA DNA glycosylase (named Aag for * This work was supported... effects of 3MeA. We therefore cre- ated 3MeA DNA glycosylase-deficient cells by targeted homol- ogous... 3MeA DNA lesions almost exclusively (14, 15). Here we com- ...

  

Source: Engelward, Bevin - Division of Bioengineering, Massachusetts Institute of Technology (MIT)

 

Collection: Biology and Medicine

 
35 Cell, Vol . 15, 1-14, September 1978, Copyright 1978 by M!T A Complete Immunoglobulin Gene Is Created by
 

Summary:  region of a A, mRNA. Heteroduplex analysis of the three A, DNA clones revealed that Ig 303A DNA... of Ig 25A DNA . The sequence arrange- ment observed in the cloned DNA is the same... nontranslated DNA segment, and corresponds to the position of the J sequence on the ...

  

Source: Vosshall, Leslie - L:aboratory of Neurogenetics and Behavior, Rockefeller University

 

Collection: Biology and Medicine

 
36 Repeat silica extraction: a simple technique for the removal of PCR inhibitors from DNA extracts
 

Summary:  -extracted with ancient DNA (aDNA) and when present make the analysis of aDNA difficult, if not impossible. In this study... as well as successful removal of PCR inhibitors by use of a ``positive aDNA control,'' a test necessary... . All rights reserved. Keywords: Polymerase chain reaction inhibitor; Silica extraction; ...

  

Source: Kemp, Brian M. - Department of Anthropology & School of Biological Sciences, Washington State University

 

Collection: Biology and Medicine

 
37 Accommodating the Effect of Ancient DNA Damage on Inferences of Demographic Histories
 

Summary:  - spective to molecular evolutionary analyses. Large ancient DNA (aDNA) data sets spanning nearly 60... to and ubiquitous in aDNA data sets: postmor- tem DNA damage. They correctly argue that DNA damage, which manifests... removing all sites containing tran- sitions from alignments of aDNA sequences. Perhaps unsur- prisingly

  

Source: Australian National University, Centre for Macroevolution and Macroecology

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine

 
38 CLASS 4.3: 04/19/07 NUCLEOSOMES
 

Summary:  and the nucleosome a. DNA on the nucleosome surface - The structure of DNA - DNase I and DNase II - Can only cut... of the core particle a. DNA - DNA = - Wrapped b. Proteins - H3 and H4 exist as - H2A and H2B exist #12

  

Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas

 

Collection: Biology and Medicine

 
39 Accommodating the Effect of Ancient DNA Damage on Inferences of Demographic Histories
 

Summary:  - spective to molecular evolutionary analyses. Large ancient DNA (aDNA) data sets spanning nearly 60... to and ubiquitous in aDNA data sets: postmor- tem DNA damage. They correctly argue that DNA damage, which manifests... removing all sites containing tran- sitions from alignments of aDNA sequences. Perhaps unsur- prisingly

  

Source: Shapiro, Beth - Department of Biology, Pennsylvania State University

 

Collection: Biology and Medicine

 
40 Oregon State University Sun Grant Western Regional Center
 

Summary:  cloning efforts continue with the PHB (35S::ABC) pathway and a poplar senescence promoter (a DNA sequence

  

Source: Tullos, Desiree - Department of Biological and Ecological Engineering, Oregon State University

 

Collection: Environmental Sciences and Ecology


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41 Bias of Purine Stretches in Sequenced Chromosomes David Ussery
 

Summary:  chromosome organisation. A-DNA / Z-DNA / DNA structures / complete genomes / Bacterial chromosomes... : A-DNA, B-DNA, and Z-DNA. In solution, for most DNA sequences the helical structure is a mixture... -B-form confor- mations. 1.1 Purine stretches and A-DNA Stretches of G's (or C's) longer than four nucleotides

  

Source: Ussery, David W. - Center for Biological Sequence Analysis, Institute of Biotechnology, Danmarks Tekniske Universitet

 

Collection: Biotechnology

 
42 Updated 1/24/05 Calcium Phosphate Transfection page 1 of 1 Calcium Phosphate Transfection
 

Summary:  components in the order specified (1 ml final volume): a. DNA __ µl (total 5 µg DNA) b. diH2O __ µl (445 µl

  

Source: Soderling, Scott - Department of Cell Biology, Duke University

 

Collection: Biology and Medicine

 
43 Ancient DNA from giant extinct lemurs confirms single origin of Malagasy primates
 

Summary:  ). This morphological relationship has also been confirmed by a study of ancient DNA (aDNA) (28). The relationships... , H5 has been the one most rigorously addressed with aDNA methods, although the results have been... contradictory. In one study, aDNA data provided support for the affinity of Megaladapis and Lepilemur (33

  

Source: Karanth, K Praveen - Centre for Ecological Sciences, Indian Institute of Science, Bangalore; Yoder, Anne - Department of Biology, Duke University

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology

 
44 JOURNAL OF BACTERIOLOGY, July 2002, p. 38483855 Vol. 184, No. 14 0021-9193/02/$04.00 0 DOI: 10.1128/JB.184.14.38483855.2002
 

Summary:  - ies designed to understand the replication initiation process in M. tuberculosis revealed that the dnaA-dna... - culosis revealed that the dnaA-dnaN intergenic region is a hot spot for IS6110 insertion (7). While many... plasmids in an M. tuberculosis host (10, 17, 18). DNA fragments containing the dnaA-dnaN intergenic region

  

Source: Kramer, Fred - Public Health Research Center, International Center for Public Health, University of Medicine and Dentistry of New Jersey

 

Collection: Biology and Medicine

 
45 Cell, Vol. 50, 841-846, September 11, 1987, Copyright 0 1987 by Cell Press The DNA-Binding Domains of the jun Oncoprotein and
 

Summary:  of the LexA DNA-binding domain (open box), GCN4 (black box with transcriptional activation and DNA... proteins containing the LexA DNA- binding domain, the GCN4 transcriptional activation region... an in vivo DNA-binding assay for the jun region. The LexA DNA-binding ...

  

Source: 

 

Collection: Biology and Medicine

 
46 In: New Directions in Lemur Studies, edited by Rakotosamimanana et al., Kluwer Academic / Plenum Publishers,
 

Summary:  ). The failures relate directly to the universal challenges of ancient DNA (aDNA) studies: aDNA is always... preservation (Lindahl, 1993). Thus far, there have been no repeatable studies to demonstrate that aDNA older... conditions, and good histological preservation, aDNA studies offer real hope for the ...

  

Source: Yoder, Anne - Department of Biology, Duke University

 

Collection: Environmental Sciences and Ecology

 
47 Ancient DNA Chronology within Sediment Deposits: Are Paleobiological Reconstructions Possible and Is DNA Leaching a Factor?
 

Summary:  reported the successful extraction of ancient DNA (aDNA) from both frozen and nonfrozen sediments (even... for vertical migration of aDNA across strata. To assess the extent of this problem, we extracted aDNA from... that the amount of sheep DNA decreased as the age of sediments increased. Our results suggest that sedimentary ...

  

Source: Shapiro, Beth - Department of Biology, Pennsylvania State University

 

Collection: Biology and Medicine

 
48 Computers and Chemistry 26 (2002) 531541 Bias of purine stretches in sequenced chromosomes
 

Summary:  in eukaryotic chromosome organisation. © 2002 Elsevier Science Ltd. All rights reserved. Keywords: A-DNA; Z... . Ussery et al. / Computers & Chemistry 26 (2002) 531­541532 1.1. Purine stretches, A-DNA, and triple... forms a stable RNA double stranded molecule might also form a more stable A-DNA conformation (Antony et

  

Source: Ussery, David W. - Center for Biological Sequence Analysis, Institute of Biotechnology, Danmarks Tekniske Universitet

 

Collection: Biotechnology

 
49 Modeling High-resolution Hydration Patterns in Correlation with DNA Sequence and Conformation
 

Summary:  structure B-DNA conformations were found with the AMBER force-®eld and A-DNA conformations with CHARMM... TÁA base-pairs and around A-DNA as compared to B-DNA. This is partially offset by a lar- ger number... of water molecules in hydrophobic contact with DNA around TÁA base-pairs and around A-DNA. The numbers

  

Source: Last, Robert L. - Department of Biochemistry and Molecular Biology, Michigan State University

 

Collection: Biology and Medicine

 
50 Biophysical Journal Volume 65 December 1993 2291-2303 A Systematic Method for Studying the Spatial Distribution of Water
 

Summary:  neutron scattering study of an A-DNA fiber, which shows localized sites of preferred hydration... 2 Statistics of hydrated building blocks Conformational Trype A-DNA B-DNA Z-DNA TOTAL Guanine... are labeled "S" and those in the major groove "W." Hydration of bases Guanine A-DNA (Fig. 2 a, Table 3

  

Source: Schneider, Bohdan - Institute of Biotechnology (Prague)

 

Collection: Biotechnology ; Materials Science

 
51 K U R S A R A h D H O L Z W A R T H Backbone Conformational Change in the A -B Transition of
 

Summary:  CH stretching motions. The band at 2890 is perpendicularly po- larized in A-DNA but parallel... perpendicular to parallel in the B -A transition, in qualitative accord with predictions from B- and A-DNA... O . 1 5 , 1 9 1 6 #12;A - B T R A N S I T I O N I N D N A A- DNA B-DNA DIRECTION OF HELIX FIGURE 1

  

Source: Coley, Phyllis - Department of Biology, University of Utah

 

Collection: Environmental Sciences and Ecology

 
52 GALLEX, a Measurement of Heterologous Association of Transmembrane Helices in a Biological Membrane*
 

Summary:  helices in E. coli. Recently, an E. coli two-hybrid system based on the LexA DNA binding domain... ). LexA dimerization is required to repress transcription efficiently, and the LexA DNA binding domain... does not contribute to the dimerization of the protein. The discovery of LexA ...

  

Source: Engelman, Donald M.- Department of Molecular Biophysics and Biochemistry, Yale University

 

Collection: Biology and Medicine

 
53 Proc. Natl. Acad. Sci. USA Vol. 94, pp. 29932998, April 1997
 

Summary:  . (a) B-DNA viewed perpendicularly to the helical axis. (b) B-DNA viewed along the 5 ­5 vector. (c) A-DNA... the glycosidic angle to much less negative values (approximately 115 ) than those found in A-DNA ( 160 ). [TA... ).] This observation led to the idea that TA-DNA might be produced from an intermediate A-DNA state (10), a ...

  

Source: Croquette, Vincent - Laboratoire de Physique Statistique, Département de Physique, École Normale Supérieure

 

Collection: Physics

 
54 DOI: 10.1126/science.1146971 , 1927 (2007);317Science
 

Summary:  greater analytical power, the degraded state of ancient DNA (aDNA) has prevented recovery and assembly... of the full genome by conventional genetic methods. Al- though aDNA has been applied to phylogenetic questions... technologies have begun to revolutionize aDNA research, enabling the application of whole- genome shotgun

  

Source: Miller, Webb - Departments of Biology & Computer Science and Engineering, Pennsylvania State University

 

Collection: Biology and Medicine ; Computer Technologies and Information Sciences

 
55 Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA
 

Summary:  sequence anal- yses suggested its inclusion in the RecA DnaB superfamily. A characteristic of the proteins... . These data support the inclusion of KaiC into the RecA DnaB superfamily and have important implications... -length KaiC from S. elongatus PCC 7942 (KaiC) is a member of the bacterial ...

  

Source: Cox, Michael M. - Department of Biochemistry, University of Wisconsin at Madison; Johnson, Carl H. - Department of Biological Sciences, Vanderbilt University

 

Collection: Biology and Medicine

 
56 SydGreenberg/SciencePhotoLibrary By David Harel
 

Summary:  to as time proceeds (Fig. 4). In contrast, in the less frequently occurring forms of DNA, i.e. A-DNA and Z... )b Height/ width Width/ offset A-DNA5,C B-DNA5, C Z-IDNA9 Z-IIDNA9 25.6 33.8 44.6 44.6 18.9 21.1 17.5 18... distant from the helix axis: A-DNA 05', B-DNA 02P, Z-I DNA C8(G), Z-II DNA O2P (C). b Offset determined

  

Source: Sussman, Joel L. - Department of Structural Biology, Weizmann Institute of Science

 

Collection: Biology and Medicine

 
57 CINT Science Highlight September 22, 2010 NanoCluster Beacon detects specific nucleic acid target sequence for diagnostics
 

Summary:  Nanotechnologies, a DOE Office of Basic Energy Sciences user facility at LANL. Reference: "A DNA-Silver Nanocluster

  

Source: Los Alamos National Laboratory, Theoretical Division, Condensed Matter and Statistical Physics Group

 

Collection: Materials Science

 
58 Maximum A Posteriori Classification of DNA Structure from Sequence Information
 

Summary:  for DNA helices are the two right­handed forms, A­DNA and B­DNA, and the left­handed form Z... among the A­DNA structures. B­DNA structures had 16 crystal types, and Z­DNA structures had 5 crystal... ­DNA there were three motifs, for Z­DNA there were two and for A­DNA there was one. 2 #12; 2.2 Data Representation

  

Source: Hirsh, Haym - Department of Electrical and Computer Engineering, Rutgers University

 

Collection: Computer Technologies and Information Sciences

 
59 Characterization of Nonspecific Protein-DNA Interactions by H Paramagnetic Relaxation Enhancement
 

Summary:  for comparison. We show that the 1HN-PRE profiles for the non- specific HMGB-1A/DNA and specific SRY... ) and rhodamine (acceptor) labels located at distinct 5-temini were measured on the free DNA, the HMGB-1A/ DNA... A/DNA complex with 100, 330, and 910 nM HMGB- 1A were 0.29 ( 0.01, 0.33 ( 0.01, and 0.35 ( 0

  

Source: Clore, G. Marius - Laboratory of Chemical Physics. National Institutes of Health

 

Collection: Biology and Medicine

 
60 Calculating Structures and Free Energies of Complex Molecules
 

Summary:  , the structure remains A if simulated in 85% ethanol,14 so one has a stable A-DNA trajectory under... such conditions. One can then calculate Gh(B-DNA) and Gh(A-DNA) in continuum water using eq 1 using "snapshots... " from the trajectories in water and in 85% ethanol. As shown by Srinivasan et al.,10 Gh(B-DNA) - Gh(A-DNA

  

Source: Wang, Wei - Department of Chemistry and Biochemistry, University of California at San Diego

 

Collection: Chemistry ; Biology and Medicine


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61 American Journal of Botany 97(9): 15791584. 2010. American Journal of Botany 97(9): 15791584, 2010; http://www.amjbot.org/ 2010 Botanical Society of America
 

Summary:  over long time scales. Ancient DNA (aDNA) analysis of plants, although not common in the literature... ; Noonan et al., 2006). Modern, intact DNA is heavily favored over fragmented aDNA during amplification, so... and se- quenced aDNA fragments from five samples of the remains found at the soil surface and from one

  

Source: Howat, Ian M. - Byrd Polar Research Center & School of Earth Sciences, Ohio State University

 

Collection: Geosciences

 
62 Phylogeographic insights into cryptic glacial refugia
 

Summary:  by standardising values to represent a single sample size, usually the smallest used. Ancient DNA (aDNA): DNA... the genealogical history of these populations in a spatial context. The recent development of ancient DNA (aDNA... [45]. aDNA studies in a range of organ- isms are now providing often surprising insights

  

Source: Provan, Jim - School of Biological Sciences, Queen's University Belfast

 

Collection: Environmental Sciences and Ecology

 
63 Molecular basis for discriminating between normal and damaged bases by the human alkyladenine
 

Summary:  dimensions of a 42.1 Å, b 57.3 Å, and c 125.5 Å. One AAG A-DNA complex (Mr 33,000) occupies... , initial models of the AAG A- DNA complexes were subjected to rigid-body and positional refinement in CNS... ; Table 1). The model of the E125Q AAG A-DNA complex consists of 200 residues, 24 nucleotides, 80

  

Source: Lau, Albert Y. - Department of Biophysics and Biophysical Chemistry, Johns Hopkins University

 

Collection: Biology and Medicine

 
64 Sex Identification of Children Sacrificed to the Ancient Aztec Rain Gods in Tlatelolco
 

Summary:  ) coextracted with an- cient DNA (aDNA) and/or the degradation of aDNA (Pa¨a¨bo 1989) can cause incorrect sex... methods for extracting and analyzing aDNA (O'Rourke 2007). Sex identification of the victims of Tlatelolco... No 12­14 Adult K1Y No E9-3 Adult K1Y NA No Note: Each aDNA extract is indicated by a ...

  

Source: Kemp, Brian M. - Department of Anthropology & School of Biological Sciences, Washington State University

 

Collection: Biology and Medicine

 
65 BioMed Central Page 1 of 26
 

Summary:  structures confirmed the sequence dependent effects observed here [9-12]. A-DNA, which was first crystallised... -like to exclusively B-like, a few appeared to show features interme- diate between A-DNA and B-DNA, to a mixture... -like confor- mation in its free form [33,34], inclusion of A-DNA oligomer structures also in the ...

  

Source: Bansal, Manju - Molecular Biophysics Unit, Indian Institute of Science, Bangalore

 

Collection: Biology and Medicine

 
66 Questions in Cuban and CaribbeanQuestions in Cuban and Caribbean Archaeology:Archaeology
 

Summary:  ­Identity #12;Evidence · People ­ Skeletal analysis ­ aDNA ­ Diet ­ Isotopes ­ Plant and Animal resources... (direct bone dates) ­ For Canimar Abajo ­ For Pinar del Rio and other provinces · Intensive aDNA typing

  

Source: Martin, Jeff - Kellogg Radiation Laboratory, California Institute of Technology

 

Collection: Physics

 
67 "Initiative for the Promotion of Young Scientists' Independent Research-developing the next generation of leaders at the University of Tsukuba"
 

Summary:  p sah e ylbmessA dna ylbmessasid fo eht suloelcun ylbmessADisassembly Ver.2 #12;2 TARA D H #12;3 #12... orP m pate hase pateM hase A pan h sa e G1 p sah e ylbmessA dna ylbmessasid fo eht suloelcun ylbmess

  

Source: Kaliszyk, Cezary - Department of Computer Science, University of Tsukuba

 

Collection: Computer Technologies and Information Sciences

 
68 Copyright 2006 by the Genetics Society of America DOI: 10.1534/genetics.106.057349
 

Summary:  leaching of free DNA molecules between permafrost layers. THE successful retrieval of ancient DNA (aDNA) se... -life of amplifiable aDNA (e.g., Pa¨a¨bo and Wilson 1991; Poinar et al. 1996, 2002; Marota et al. 2002). However... address the role of strand breaks vs. crosslinks in limiting the am- plification of aDNA molecules ...

  

Source: Wiuf, Carsten - Bioinformatics Research Center, University of Aarhus

 

Collection: Biotechnology

 
69 Contributions to Zoology, 76 (2) 87-94 (2007) Using ancient DNA techniques to identify the origin of unprovenanced museum specimens,
 

Summary:  it was still alive. To test this hypothesis, we used ancient DNA(aDNA) techniques to extract and sequence... , the potential for aDNA techniques to iden- tify the origins of previously unassigned museum specimens continues... techniques have made it possible to amplify short fragments of ancient DNA (aDNA), normally mitochondrial ...

  

Source: Shapiro, Beth - Department of Biology, Pennsylvania State University

 

Collection: Biology and Medicine

 
70 Proc. Natl. Acad. Sci. USA Vol. 95, pp. 85268531, July 1998
 

Summary:  -specific DNA-binding protein, binds to TnpA and stabilizes the TnpA­DNA complex. The high redundancy of Tnp... is not cooperative, formation of intermolecular TnpA­DNA complexes exhibits cooperativity. We also show that Tnp... of Intermolecular TnpA­DNA Com- plexes. Complexes of progressively larger size are observed as the ...

  

Source: Schläppi, Michael - Biological Sciences Department,, Marquette University

 

Collection: Biology and Medicine

 
71 Jan P.Erzberger, Michelle M.Pirruccello and James M.Berger1
 

Summary:  be conserved across bacterial, archaeal and eukaryotic domains of life. Keywords: bacteria/DnaA/DNA replication... to the HTH and the basic loop motifs are high- lighted in red. (C) RIBBONS model of the DnaA±DNA complex... ); Sutton and Kaguni (1997b) G426S A355 N/A DNA-binding defect Carr and Kaguni (1996) ...

  

Source: Berger, James M. - Department of Molecular and Cell Biology, University of California at Berkeley

 

Collection: Biology and Medicine

 
72 Ancient DNA typing of archaeological pig remains corroborates historical records James Haile a,*, Greger Larson b
 

Summary:  species must be available. Mitochondrial DNA (mtDNA) is favoured over nuclear DNA for aDNA studies because... -mortem DNA decay (Hoss et al., 1996; Smith et al., 2003) and the difficulty of amplifying long tracts of aDNA... these conditions, the most common genetic target for aDNA prov- enancing is the hypervariable region within

  

Source: Shapiro, Beth - Department of Biology, Pennsylvania State University

 

Collection: Biology and Medicine

 
73 Genetic isolation of a now extinct population of bottlenose dolphins (Tursiops truncatus)
 

Summary:  populations. Here, we use ancient DNA (aDNA) to assess the status of a historicalbottlenose dolphin (Tursiops... extraction and amplification All aDNA extractions and polymerase chain reaction (PCR) set-ups were carried... out in a dedicated aDNA laboratory where no work on modern or post-PCR DNA was carried out

  

Source: Aberdeen, University of - Lighthouse Field Station

 

Collection: Environmental Sciences and Ecology

 
74 Z .Mutation Research 460 2000 201210 www.elsevier.comrlocaterdnarepair
 

Summary:  -glycosylic bond. In contrast to AAG, the structure of the AlkA­DNA complex suggests that AlkA substrate... to deprotonate the bound water for a backside attack of Z .the N-glycosylic bond. In the AlkA-DNA complex b the 1... cleft and it contains the catalytically essential Asp238. The recent crystal structure of an AlkA­DNA

  

Source: Lau, Albert Y. - Department of Biophysics and Biophysical Chemistry, Johns Hopkins University

 

Collection: Biology and Medicine

 
75 Rapid Detection of Protein Tyrosine Kinase Activity in Recombinant Yeast Expressing a Universal Substrate
 

Summary:  A protein component forms strong noncovalent interactions with LexA DNA sites upstream of the reporter gene... and fused to the LexA DNA binding domain (DBD); and (3) the Grb2 SH2 domain fused to the B42 activation... sequence were expressed fused to green fluorescent protein (GFP), which was linked to the ...

  

Source: Peterson, Blake R. - Department of Medicinal Chemistry, University of Kansas

 

Collection: Chemistry

 
76 1. %#a [W#l%,%%-*, ^; Single-choice questions ,total = 22% ] 1.Which of the following reagents are components of LB medium?
 

Summary:  . The probe used in Far Western blot is (A). DNA (B).RNA (C). protein @). antibody #12;24. Which... in replicating the telomeric repeats (telomere) of eucaryotic chromosomes? (A). DNA-dependentDNA polymerase (B... -dependentRNA polymerase 111 #12;32.The existenceof Okazaki fragments demonstrate ...

  

Source: Huang, Haimei - Department of Life Science, National Tsing Hua University

 

Collection: Biology and Medicine

 
77 Origins of Specificity in Protein-DNA Recognition
 

Summary:  References AT rich B-DNA 72, 114 GC rich A-DNA at low humidity 76, 77, 188 A-tract B -DNA, narrow minor... groove, bending, rigid for 4 bp 81­83, 86, 217 TATA box High deformability, A-DNA, TA-DNA upon TBP... shape, e.g., DNA bending, A-DNA, and Z-DNA). In addition, although some DNA sequences do not pro- duce

  

Source: Rohs, Remo - Department of Biological Sciences, University of Southern California

 

Collection: Biology and Medicine

 
78 Particulate Air Pollution has a Metal Mediated Cytotoxic Effect Detected by Whole Cell Bacterial Reporters
 

Summary:  /Arsenite zntA Excess Zn(II), Cd(II), and Pb(II) recA DNA damage cydA Respiratory Inhibition

  

Source: Dov, Avigad - Institute of Earth Sciences, Hebrew University of Jerusalem

 

Collection: Geosciences

 
79 Structure and Function of Fusion Gene Products in
 

Summary:  tissues, frequently lost in tumors Pointed ETSN- -C Dimerization Recruiting Sin3A DNA-binding Protein

  

Source: Spang, Rainer - Computational Molecular Biology Group, Max-Planck-Institut für molekulare Genetik

 

Collection: Computer Technologies and Information Sciences ; Biotechnology ; Biology and Medicine

 
80 Lecture 3 outline -Nucleic Acids, DNA & RNA I. Nucleic Acids made up of nucleotide monomers
 

Summary:  = Pyrmidines are = DNA A. DNA secondary structure ­ brief history 1. DNA was made up of nucleotides

  

Source: Dever, Jennifer A. - Biology Department, University of San Francisco

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology


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81 CLASS 4.6: 05/01/07 GENETIC ENGINEERING
 

Summary:  ways that DNA can be cloned (amplified) i. Place DNA #12;2 ii. Use - Need - Must - Use a). DNA b

  

Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas

 

Collection: Biology and Medicine

 
82 High-Throughput Compound Screening and Discovery in an Academic Setting
 

Summary:  is very standard--a DNA template and a primer. The tech- nology is essentially a generic sequencer

  

Source: Li, Min - Department of Neuroscience, Johns Hopkins University

 

Collection: Biology and Medicine

 
83 Problem Set 7 7. Okazaki fragments are approximately how many bases in length?
 

Summary:  replication? A. DNA primase B. single-stranded binding protein C. RNase H D. DNA gyrase E. DNA ligase REF: 7

  

Source: Gage, Daniel J. - Department of Molecular and Cell Biology, University of Connecticut

 

Collection: Biology and Medicine

 
84 12. How is sigma32 degradation controlled by temperature and why is this important to the cell?
 

Summary:  __________ the promoter. A) DNA / toward B) RNA / toward C) DNA / away from D) RNA / away from 29) In all cells a gene

  

Source: Gage, Daniel J. - Department of Molecular and Cell Biology, University of Connecticut

 

Collection: Biology and Medicine

 
85 CLASS 3.3: 03/22/07 TRANSPOSABLE ELEMENTS
 

Summary:  = i. Consensus ii. DNA iii. Protein - Explains why 3. Consequences of transposition a. DNA

  

Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas

 

Collection: Biology and Medicine

 
86 CLASS 4.2: 04/17/07 CHROMOSOMES
 

Summary:  between DNA and protein 3. Eukaryotic packaging a. DNA packaging - A metaphase chromosome - Consists

  

Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas

 

Collection: Biology and Medicine

 
87 A. Transcription Factors: 1. Classes of transcription factors
 

Summary:  regulators - Make 2. Activators have modular domains a. DNA-binding domain = b. Protein-binding domains

  

Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas

 

Collection: Biology and Medicine

 
88 CLASS 1.1: 01/18/07 DNA STRUCTURE
 

Summary:  1 CLASS 1.1: 01/18/07 DNA STRUCTURE: A. DNA is the Hereditary Material: 1. Introduction a

  

Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas

 

Collection: Biology and Medicine

 
89 Tomoatsu Kaneko & Elisabeta Karl (Nor's lab) Lentiviral Infection of Endothelial Cells (HDMEC)
 

Summary:  ). Solutions for CaP04 transfection Solution A: DNA CaCl2 solution 4 µg DNA construct (and GFP as your positive

  

Source: Iruela-Arispe, Luisa - Department of Molecular, Cell, and Developmental Biology, University of California at Los Angeles

 

Collection: Biology and Medicine

 
90 Structure, Vol. 9, 105114, February, 2001, 2001 Elsevier Science Ltd. All rights reserved. PII S0969-2126(01)00572-X Computational Modeling Predicts the Structure
 

Summary:  . Our model thus efficiently integrates vectors {aDNA i , bDNA i , cDNA i } (see Figure 1), to represent... of a biomolecule into an accurate at ri and the linker vertex ri 1. The calculation of {aDNA i , bDNA i , cDNA i... that are {aDNA i , bDNA i , cDNA i }, and the angles { i, i, i} transform known to be associated with ...

  

Source: Schlick, Tamar - Department of Chemistry, New York University

 

Collection: Chemistry

 
91 Forensic Analytical Sciences, Hayward, CA 94545. Department of Anthropology and the School of Biological Sciences, Washington State University, Pullman,
 

Summary:  pressurized laboratory solely used for ancient DNA (aDNA) analysis; use of sterile and dis- posable labware... not followed all the recommendations of Cooper and Poinar (2000) to ensure the authenticity of the aDNA in our... ) on the remains from which DNA was extracted and did not clone aDNA extracted from the samples. Because

  

Source: Kemp, Brian M. - Department of Anthropology & School of Biological Sciences, Washington State University

 

Collection: Biology and Medicine

 
92 SAMENVATTING Het wordt algemeen aangenomen dat de instandhouding van de integriteit van het genoom
 

Summary:  A mutant, wat suggereert dat RecQ14A DNA herrangschikkingen onderdrukt. De recQ14A mutant werd... suggereren dat RecQ14A DNA schade zou kunnen herstellen op een manier waarbij verhoogde recombinatie geen rol

  

Source: Groningen, Rijksuniversiteit - Centre for Ecological and Evolutionary Studies, Department of Marine Benthic Ecology and Evolution,

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology

 
93 1372 Macromolecules 1996,29, 1372-1373 Dynamical Scaling of DNA Diffusion
 

Summary:  times longer than A-DNA were generated by concatenating A-DNA molecules using T4 DNA ligase (NEB

  

Source: Perkins, Thomas - JILA & Department of Molecular, Cellular, and Developmental Biology, University of Colorado at Boulder; Smith, Douglas E. - Department of Physics, University of California at San Diego

 

Collection: Biology and Medicine ; Biotechnology ; Physics

 
94 . L . GCN4,the YeostVersion Kevin Struhl
 

Summary:  the entirejun codingregion is fuseddirectly to the LexA DNA-binding domain can functionally replace GCN4... .8 In addition, LexA- Jun activatestranscription through the heterologous LexA DNA

  

Source: 

 

Collection: Biology and Medicine

 
95 Stanyon Supplemetary Material Page 1 of 10 Stanyon, C.A., Limjindaporn, T., and Finley, Jr., R.L. Simultaneous transfer of open reading
 

Summary:  A interacts with AnsA, Dna A interacts with DnaA, and Cj0036 interacts with Cj0036. The strengths... SH18-34, and one of four plasmids directing the synthesis of LexA fused to C.jejuni proteins, CheY, AnsA... , DnaA, or Cj0036. The BD strains were mated with five AD strains containing plasmids directing

  

Source: Finley Jr., Russell L. - Center for Molecular Medicine and Genetics, Wayne State University

 

Collection: Biology and Medicine

 
96 5978 Biochemistry 1989, 28, 5978-5984 Lumrey, R., & Rajender, S. (1970) Biopolymers 9,
 

Summary:  than 0.06 A). For each data set, six calculations were carried out, three starting from classical A-DNA... by starting from classical A-DNA and classical B-DNA. The atomic rms difference between these two starting... .003 v) ( g ) (A-DNA),~ -387 -507 -7 5 0.093 (B-DNA),~ -387 -501 -9 3 0.097 'There are 30 hydrogen

  

Source: Clore, G. Marius - Laboratory of Chemical Physics. National Institutes of Health

 

Collection: Biology and Medicine

 
97 I. Questions (50%) 1. $$%flA&{+BDNAeg#Ja@$fl,$,&&&A-TbG$nC1 f i R N A ; I e T Z k & U &
 

Summary:  &, AUGC fl?y$$ DNA 4 ~ ~ ~ + @ & & # J 3 $ I&+J)o (15%) 2. 4t$+S$aDNA (recombination DNA) i+i @ $&$j&3%h... of the following is required for the synthesis of DNA during replication? (A) DNA polymerase (B) dNTPs (C

  

Source: Huang, Haimei - Department of Life Science, National Tsing Hua University

 

Collection: Biology and Medicine

 
98 The Stability of Transmembrane Helix Interactions Measured in a Biological Membrane
 

Summary:  the expression of b-galactosidase, and binding of the homo-dimeric LexA DNA-binding domain represses... . After membrane integration of the proteins, dimerization of the LexA DNA-binding domain is mediated... by oligomer- ization of the transmembrane helices. The homo-dimeric LexA ...

  

Source: Engelman, Donald M.- Department of Molecular Biophysics and Biochemistry, Yale University

 

Collection: Biology and Medicine

 
99 Nature Methods Magnetic torque tweezers: measuring torsional stiffness in DNA
 

Summary:  Nature Methods Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA... . Supplementary Figure 13 Force-extension measurements for RecA-DNA heteroduplex filaments. Supplementary Figure... -extension measurements for RecA-DNA heteroduplex filaments. Magnet tweezers measurements of the force-extension behavior

  

Source: Dekker, Nynke - Kavli Institute of Nanoscience, Technische Universiteit Delft

 

Collection: Biology and Medicine

 
100 Thomas Vigdal Biochem 218
 

Summary:  the propensity of DNA to form an A-DNA like double helix (Ivanov and Minchenkova, 1995). A-DNA has a wide... a propensity to form A-DNA either across the whole region of insertion (1A and 1C) or on one side of it (1B... into A-DNA like regions. If transposase prefers DNA in which it can make easy hydrogen ...

  

Source: Bejerano, Gill - Departments of Computer Science & Developmental Biology, Stanford University

 

Collection: Computer Technologies and Information Sciences ; Biology and Medicine


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