| Sample search results for: a-rich upstream sequence |
| 1 | Analysis of Yeast's ORF Upstream Regions by Parallel Processing, Microarrays, and Computational Methods | ||
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Summary: for short sequences that are not found in any upstream region across the entire yeast genome. One possible... sequence upstream of the ATG is less than 500. In addition, delta elements are quite variant... . In most cases, both the upstream region and coding sequence ... |
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Source: Kibler, Dennis F. - School of Information and Computer Science, University of California, Irvine |
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Collection: Computer Technologies and Information Sciences |
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| 2 | The ingi and RIME non-LTR Retrotransposons Are Not Randomly Distributed in the Genome of Trypanosoma brucei | ||
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Summary: - adjacent ingi/RIME sequences. The conserved sequence is present upstream of ingis and RIMEs, suggesting... of these elements have a variable length poly(A) or A-rich 39 tail because of the involvement of an RNA intermediate... /RIME retroelements resemble site- FIG. 3.--Grouping DNA ... |
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Source: El-Sayed, Najib M. - Institute for Genomic Research, Rockville |
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Collection: Biology and Medicine |
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| 3 | Computational Identification of Cis-regulatory Elements Associated with Groups of Functionally | ||
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Summary: ). The vast majority of these motifs are homopoly- meric A-rich sequences, which are commonly found despite... ). The main drawback to the MAP score is the fact that some motifs occurring ubiquitously in a genome (e.g. A-rich... case, AlignACE will take sequence upstream of the ... |
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Source: Church, George M. - Wyss Institute for Biologically Inspired Engineering & Department of Genetics, Harvard University; Pilpel, Yitzhak - Department of Molecular Genetics, Weizmann Institute of Science |
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Collection: Biology and Medicine ; Biotechnology |
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| 4 | MOLECULAR AND CELLULAR BIOLOGY, JUlY 1985, p. 1560-1570 Vol. 5, No. 7 0270-7306/85/071560-11$02.00/0 | ||
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Summary: requires sequences around -220 upstream of the cap site, and sequences between positions -105 and -6... - acrylamide gels containing 25% formamide. The sequence upstream of position -295 is not considered confirmed... activator sequences far ... |
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Source: Ares Jr., Manny - Department of Molecular, Cell, and Developmental Biology, University of California at Santa Cruz |
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Collection: Biology and Medicine |
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| 5 | Alu elements contain many binding sites for transcription factors and may play a role in regulation | ||
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Summary: Alu is a dimer, comprised of a central A-rich region which is flanked by two similar sequence elements... that the upstream regions of the TSS are enriched with Alu elements, and the Alu consensus sequences contain dozens... . We computed the density of different transposable elements on 5000 bp long ... |
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Source: Domany, Eytan - Physics of Complex Systems, Weizmann Institute of Science |
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Collection: Biology and Medicine ; Physics |
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| 6 | Strong Eukaryotic IRESs Have Weak Secondary Structure Xuhua Xia1,2 | ||
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Summary: , Skulachev MV, Ivanov PA, Zvereva SD, Tjulkina LG, et al. (2002) Polypurine (A)-rich sequences promote cross... very low secondary structure in the 59-UTR sequences immediately upstream of the initiation codon... their reverse complements. The sequences (60 nt immediately ... |
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Source: Xia, Xuhua - Department of Biology, University of Ottawa |
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Collection: Biology and Medicine |
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| 7 | An Exact Method for Finding Short Motifs in Sequences, with Application to the Ribosome Binding Site Problem | ||
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Summary: will be called upstream sequences.) There are several reasons why only a fraction of these N upstream sequences... upstream sequences from approx imately 4000 M. tuberculosis open reading frames, with a request to look... : Twenty most frequently occurring 5mers ... |
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Source: Tompa, Martin - Department of Computer Science and Engineering, University of Washington at Seattle |
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Collection: Computer Technologies and Information Sciences |
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| 8 | Ab Initio Identification of Novel Regulatory Elements in the Genome of Trypanosoma brucei by Bayesian | ||
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Summary: and pyrimidine-rich segments Interrogation of the sequence present at the predicted change point between the A-rich... upstream of the start codon of each coding sequence [11,12,31]. Prior to the release of the trypanosomatid... by a large A-rich segment of DNA Regulatory Elements ... |
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Source: Kelly, Steve - School of Pathology & Mathematical Institute, University of Oxford |
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Collection: Mathematics ; Biology and Medicine |
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| 9 | BioMed Central Page 1 of 9 | ||
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Summary: the upstream (USE) and downstream (DSE) sequence elements, both characterized by U-rich (not GU- rich) segments... corresponds to the A-rich polyadenylation signal. There is a visible rise in Uracil fre- quency 5... ' of the signal, which could correspond to an Upstream Sequence Element. ... |
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Source: Ecole Polytechnique, Centre de mathématiques |
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Collection: Mathematics |
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| 10 | UPSTREAM COMPETITION BETWEEN VERTICALLY INTEGRATED FIRMS | ||
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Summary: UPSTREAM COMPETITION BETWEEN VERTICALLY INTEGRATED FIRMS Marc BOURREAU Johan HOMBERT Jérôme POUYET... ://www.economie.polytechnique.edu/ mailto:chantal.poujouly@polytechnique.edu hal-00440126,version2-7Jul2010 #12;Upstream Competition between... between vertically integrated firms on the upstream market level the playing field ... |
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Source: Ecole Polytechnique, Centre de mathématiques |
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Collection: Mathematics |
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| 11 | Identification of highly specific localized sequence motifs in human ribosomal protein gene promoters | ||
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Summary: /5 (15/1) downstream ATG+splicing signal M10 12 9.00E-08 AAAGAAAAAAAA 125/149 (4/22) N100 bp upstream A-rich... ) in a window from 80 bp upstream to 120 bp downstream of the TSS. Sequence logos for the first twelve motifs... upstream to the TSS (Figs. 3 and 4). However, the nucleotide ... |
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Source: Arndt, Peter - Max-Planck-Institut für molekulare Genetik; Spang, Rainer - Computational Molecular Biology Group, Max-Planck-Institut für molekulare Genetik |
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Collection: Biology and Medicine ; Biotechnology ; Computer Technologies and Information Sciences ; Physics |
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| 12 | ORIGINAL PAPER Xiu-Feng Wan Susan M. Bridges John A. Boyle | ||
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Summary: the translation start codon). In addition, there is an A-rich region centered at )34, followed by a T-rich region... around )29, followed by another A-rich region around )25. Halobacterium sp. NRC-1 and P. aerophilum... ://www.ncbi.nlm.nih.gov). The upstream sequence of each ORF was extracted using a Perl ... |
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Source: Bridges, Susan M. - Department of Computer Science, Mississippi State University |
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Collection: Computer Technologies and Information Sciences |
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| 13 | Activation of RegB endoribonuclease by S1 ribosomal protein requires an 11 nt conserved sequence | ||
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Summary: the mutation to the T4 genome by homologous recombination. The insertion of the A-rich sequence of mot... RNAs showed that the cut RNA sequences contain an A-rich sequence of 7 nt, immedi- ately 30 to the GGAG... by the 7 nt of the A-rich ... |
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Source: Ecole Polytechnique, Centre de mathématiques |
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Collection: Mathematics |
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| 14 | Asymmetric Access Networks In previous chapters, we considered performance problems that arise due to bandwidth limitations | ||
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Summary: discussion. Figure 9.2 Sequence number traces for (a) the upstream transfer and (b) the downstream transfer... upstream link. Reconstruction involves inserting new acks to bridge large gaps in the ack sequence... at any point in time. The upstream transfer is able to make steady ... |
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Source: Padmanabhan, Venkata N. - Microsoft Research |
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Collection: Computer Technologies and Information Sciences |
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| 15 | Identification of insertion hot spots for non-LTR retrotransposons: computational and biochemical | ||
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Summary: of GC (50 -GCATT-30 ). Sequences further upstream or downstream of this basic sequence had little... of the target site duplications, was removed. The resulting sequence 40 bp upstream from insertion site to 40 bp... bonding between its T-rich 30 -tail and the A-rich ... |
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Source: Ramaswamy, Ram - Schools of Information Technology & Physical Sciences, Jawaharlal Nehru University |
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Collection: Physics |
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| 16 | JOURNAL OF BACTERIOLOGY, Sept. 1995, p. 53685369 Vol. 177, No. 18 0021-9193/95/$04.00 0 | ||
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Summary: in the same direction on the chromosome vary considerably. For in- stance, the end of ppc is 596 bp upstream... in the same orientation, the 100 bp upstream and downstream of the start codons of 1,037 E. coli genes from... ). The search was restricted to the 100 bp upstream of genes, since these data were available for almost all ... |
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Source: Eyre-Walker, Adam - Department of Biology and Environmental Science, University of Sussex |
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Collection: Biology and Medicine |
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| 17 | ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS Vol. 335, No. 2, November 15, pp. 321332, 1996 | ||
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Summary: concentrations as required. Sequencing the upstream/promoter region of the PCMT1 gene. The DNA sequence... (19). The A-rich segment potentially responsible for truncated 3 -end of pDM2 is bold/italicized. Only... on either this A-rich seg-stream of the translational start codon. ... |
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Source: Clarke, Steven - Department of Chemistry and Biochemistry, University of California at Los Angeles |
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Collection: Biology and Medicine |
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| 18 | Chutes and ladders and other games we play with rivers. I. Simulated effects of upstream passage | ||
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Summary: Chutes and ladders and other games we play with rivers. I. Simulated effects of upstream passage... . This study used a population viability model to quantify the ef- fects of upstream passage at dams on white... segment far upstream supported the healthiest metapopulations, suggesting biological criteria for sit- ing |
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Source: Jager, Henriette I. - Environmental Sciences Division, Oak Ridge National Laboratory |
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Collection: Environmental Sciences and Ecology |
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| 19 | A 1 ribosomal frameshift element that requires base pairing across four kilobases suggests a | ||
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Summary: . Sequences Upstream and Downstream of the Shifty Site Are Necessary for Frameshifting in Vivo. For high... ), and substan- tial adjacent viral sequence upstream of the shifty site between the rLUC and fLUC ORFs (nt 1... - shift signals, previous experiments with BYDV genome dele- tions indicated that ... |
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Source: Miller, W. Allen - Departments of Plant Pathology & Biochemistry, Biophysics and Molecular Biology, Iowa State University |
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Collection: Biology and Medicine |
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| 20 | 888894 Nucleic Acids Research, 1999, Vol. 27, No. 3 1999 Oxford University Press Genomic detection of new yeast pre-mRNA | ||
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Summary: with cleavage position preceding a stop codon (40 ESTs); (v) occur- rence of an A-rich region (at least six... of 3 ESTs with A-rich regions possibly excludes valid 3 -end-cleavage sites; however, the determina... - tion is ambiguous since such an A-rich region is a potential #12;Nucleic Acids Research, Vol. 27, No. 3 |
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Source: Boston University, Center for Advanced Biotechnology |
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Collection: Biotechnology |
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| 21 | LETTER doi:10.1038/nature09616 Formation, regulation and evolution of | ||
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Summary: .,Li,W.,Tian,B.&Furger,A.Afunctionalhumanpoly(A)siterequiresonly a potent DSE and an A-rich upstream sequence. EMBO J. 29, 15231536 (2010). 13. Evans, D. et al. A complex... RNAs without recourse to oligo(dT) priming. Oligo(dT) priming can prime on internal A-rich regions... (Supplementary Fig. 3c)30 , ... |
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Source: Bartel, David - Whitehead Institute for Biomedical Research & Department of Biology, Massachusetts Institute of Technology (MIT) |
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Collection: Biotechnology ; Biology and Medicine |
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| 22 | Nucleotide Frequency Variation Across Human Genes | ||
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Summary: -rich sequences. Within the polyadenylation region itself, we find four mo- tifs: A-rich (this may be an artifact... a TGTGTGT consensus sequence (pa2). We also find a very significant excess of A-rich sequences (pa1... of ESTs and database annota- tion (Beaudoing and Gautheret 2001). ... |
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Source: Majewski, Jacek - Department of Human Genetics, McGill University |
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Collection: Biology and Medicine |
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| 23 | Nucleic Acids Research, 2008, 112 doi:10.1093/nar/gkn1015 | ||
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Summary: Nucleic Acids Research, 2008, 112 doi:10.1093/nar/gkn1015 The A-rich RNA sequences of HIV-1 pol... . Bioinformatic analysis predicted that A-rich sequences are generally associated with minimal local RNA... structures. Using codon modifications to reduce the amount of A-rich ... |
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Source: Palmenberg, Ann C.- Institute for Molecular Virology & Department of Biochemistry, University of Wisconsin at Madison |
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Collection: Biology and Medicine |
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| 24 | 2011LandesBioscience. Donotdistribute. | ||
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Summary: Interspersed Element 1 fam- ily (L1Hs) inserts into T-A rich sequences and comprises about one sixth... the insertion site with 80 bp of upstream and 70 bp of downstream sequence. The migration of naked DNA (e... binding motifs to bind to sequences ... |
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Source: Christensen, Shawn M. - Department of Biology, University of Texas at Arlington |
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Collection: Biology and Medicine |
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| 25 | Abstract.-The sublethal effects induced by a model carcinogen and | ||
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Summary: observed, a signifi- cant decrease was noted in perfor- mance of the upstream orientation behaviors... the role of upstream swim- ming behavior after emergence. Decreased Performance of Rainbow Trout... [a]P exposure on the emergence success and upstream swimming be- havior. A qualitative model, utilizing data |
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Source: National Oceanic and Atmospheric Administration (NOAA), Fishery Bulletin |
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Collection: Environmental Sciences and Ecology |
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| 26 | A Multifunctional Turnip Crinkle Virus Replication Enhancer Revealed by in vivo Functional SELEX | ||
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Summary: on average 33% more stable in their (þ)-strand orientation, and most formed hairpins with a A-rich sequence... sequences fold into stem-loops that are more stable in the (þ)-sense orientation and retain A-rich sequences... sequence that is unrelated to satC, ... |
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Source: Simon, Anne - Department of Cell Biology and Molecular Genetics, University of Maryland at College Park |
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Collection: Biology and Medicine |
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| 27 | Positive and Negative Selection on Noncoding DNA Close to Protein-Coding Genes in Wild House Mice | ||
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Summary: - terpretation of sequences further upstream and down- stream from these regions was made more difficult... and the upstream and downstream regions that we successfully sequenced. We chose not to restrict our analyses... to those genes for which upstream, downstream, exonic, and intronic ... |
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Source: Halligan, Daniel - Institute of Evolutionary Biology, University of Edinburgh |
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Collection: Environmental Sciences and Ecology |
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| 28 | Profiles of streamwise velocity component, u in Run 4, measured by ultrasonic Doppler velocity profilers (UDVPs) and averaged over measuring intervals of 600 s. The UDVP array was fixed at x = 6.10 m throughout the run. The profiles are drawn in positions | ||
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Summary: flow was fully turbulent. The supercritical jet in the upstream reaches of the test channel went... of lamina sets develop. In Run 2 an upwards sequence of beds developed on top of the massive basal unit (Fig... boundaries dipping upstream to give a climbing and upward-thinning coset. The upper-boundaries of sets were |
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Source: Matthews, Adrian - Schools of Environmental Sciences & Mathematics, University of East Anglia |
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Collection: Mathematics ; Environmental Sciences and Ecology |
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| 29 | Sequence-Dependent Upstream DNARNA Polymerase Interactions in the Open Complex with PR and PRM | ||
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Summary: Sequence-Dependent Upstream DNARNA Polymerase Interactions in the Open Complex with PR and PRM... , RPos formed at PRM showed a specific contact between RNAP and the upstream DNA sequence. We further... carboxy-terminal domains (CTDs) that interact with A+T-rich (ATR) DNA sequences ... |
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Source: Bustamante, Carlos - Department of Chemistry, University of California at Berkeley |
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Collection: Chemistry |
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| 30 | Intronic Alus Influence Alternative Splicing Galit Lev-Maor1. | ||
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Summary: and inserted an 800-nucleotide non-Alu intronic sequence upstream of the branch sequence and downstream... ). Insertion of a complementary sequence to the short Alu2 sequence along with its upstream intronic sequence... ... |
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Source: Ast, Gil - Department of Molecular Genetics and Biochemistry, Tel Aviv University |
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Collection: Biology and Medicine |
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| 31 | Modification of the solar wind electron velocity distribution at interplanetary shocks | ||
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Summary: . Upstream, velocity distributions have the signature of shock-accelerated electrons with the characteristic... the observed upstream distribution to the downstream region. The mapping successfully reproduces the inflated... in the Feldman et al. study had downstream to upstream density ratios in the range between 2 and 4 |
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Source: California at Berkeley, University of - Silver Space Sciences Laboratory |
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Collection: Physics |
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| 32 | ANewAlgorithm for Vehicle Reidentification and Travel Time Measurement on Freeways | ||
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Summary: at a downstream detector station is matched with the vehicle's corresponding length measure- ment at an upstream... , it reidentifies platoons rather than individual vehicles. The sequence of measured lengths #12;2 Coifman... vehicle, all possible matches are found. Then, the algorithm looks for sequences of vehicles from |
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Source: Coifman, Benjamin - Departments of Electrical Engineering & Civil and Environmental Engineering and Geodetic Science, Ohio State University |
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Collection: Engineering ; Energy Storage, Conversion and Utilization |
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| 33 | Phylogenetic Footprinting Reveals Evolutionarily Conserved Regions of the Gonadotropin- | ||
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Summary: there are considerable differences between the human, mouse, and rat GnRH 5 -upstream regions, much of the sequence... . This upstream re- gion is composed of two blocks of strong homology with the human sequence. One region, located... pair insertions are found in the upstream region: ... |
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Source: Mellon, Pamela L. - Department of Reproductive Medicine, University of California at San Diego |
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Collection: Biology and Medicine |
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| 34 | Efficient Initiation of HIV-1 Reverse Transcription in Vitro REQUIREMENT FOR RNA SEQUENCES DOWNSTREAM OF THE PRIMER BINDING SITE ABROGATED BY | ||
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Summary: and variable loop of tRNA3 Lys and a sequence upstream of the A-rich loop in the template. Taken together... of the anticodon stem and the variable loop of the tRNA (nt 4046) and U5 sequences upstream of the A-rich loop... and an A-rich loop in ... |
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Source: Levin, Judith G. - Laboratory of Molecular Genetics, National Institutes of Health |
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Collection: Biology and Medicine |
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| 35 | Evolutionary Emergence of Genes Through | ||
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Summary: ORF2 AAA AAA AAA 3 UTR Left monomer A-rich Right monomer Figure 1 Structures of four typical human... retrotransposons (not drawn to scale). The Alu element consists of two 7SL RNA-related monomers separated by an A-rich... inserted either in direct or opposite orien- tation relative to host gene transcription. Indeed, the ... |
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Source: Batzer, Mark A. - Department of Biological Sciences, Louisiana State University |
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Collection: Biotechnology ; Biology and Medicine |
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| 36 | Conservation and Evolution of Cis-Regulatory Systems | ||
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Summary: with known upstream or downstream cis-regulatory sequences. Reasoning that many of these gene groups... with the sequences found upstream of the Rpn4p target genes and suggest that Rpn4p has a different function in N... and Elkan 1994) to identify 597 upstream ... |
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Source: Babu, M. Madan - Laboratory of Molecular Biology, MRC; Gasch, Audrey P. - Genome Center of Wisconsin & Department of Genetics, University of Wisconsin at Madison |
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Collection: Biology and Medicine ; Biotechnology |
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| 37 | In the paper entitled "Feedback Control of Mitosis in Budding Yeast" by Li and Murray (Cell 66, 519-531,1991), we previously reported the sequence of a gene that we believed complemented | ||
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Summary: sequence: in the upstream sequence, there is an additional T between positions 71 and 72, and within... 66, 519-531,1991), we previously reported the sequence of a gene that we believed complemented... acid open reading frame upstream of and divergently transcribed from BET4. The mad2-7 ... |
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Source: Murray, Andrew W. - Department of Molecular and Cellular Biology, Harvard University |
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Collection: Biology and Medicine |
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| 38 | Proc. Nadl. Acad. Sci. USA Vol. 82, pp. 8419-8423, December 1985 | ||
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Summary: poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast (gene... general role in transcription. Upstream elements, which resemble mammalian enhancer sequences... three genes depends on poly(dA-dT) sequences upstream of the TATA ... |
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Source: |
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Collection: Biology and Medicine |
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| 39 | Mol. Biol. Evol. 15(11):13901402. 1998 1998 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038 | ||
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Summary: -TAATAAATACAATACAATACAA-3 . As we mentioned in the introduction, this type of repeti- tious, often A-rich, sequence... se- quences are found upstream of RT sequences (this has been confirmed for all of the C. elegans... -terminal end of the EN. We have not been able to extend the simi- larity of any Frodo ... |
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Source: Labrador, Mariano -Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee |
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Collection: Biology and Medicine |
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| 40 | Prediction of the ssDNA structure surrounding eight original ISMex4 insertion sites in the Methylobacterium genome. To deduce the ssDNA structure of original sequences before ISMex4 | ||
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Summary: in the Methylobacterium genome. To deduce the ssDNA structure of original sequences before ISMex4 insertions, ISMex4... and the 4-bp direct repeat generated by transposition were removed. Target sequences and insertion sites... -probe plasmid; Kmr EU679506 pHC44 968-bp 5` upstream region of icuABWT in pHC42; Kmr FJ389166 pHC46 ... |
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Source: Marx, Christopher J. - Department of Organismic and Evolutionary Biology, Harvard University |
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Collection: Biology and Medicine ; Environmental Sciences and Ecology |
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| 41 | Molecular and Biochemical Parasitology 93 (1998) 163165 Erratum to ``Gene linkage and steady state RNAs suggest | ||
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Summary: Parasitology 93 (1998) 163165 165 Fig. 1. Closely linked gene upstream of enolase encodes UbCRBP. (A... ) Schistosoma mansoni UbCRBP gene sequence extending into exon 3 of the downstream enolase gene (exon 1... of the enolase gene is the SL). Lower case letters represent upstream regions, introns, or the intergenic region |
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Source: Davis, Richard E. - Department of Biochemistry and Molecular Genetics, University of Colorado Health Sciences Center |
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Collection: Biology and Medicine |
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| 42 | Large-scale discovery of insertion hotspots and preferential integration sites of human | ||
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Summary: , specific prominent hotspot, directly after the A-rich linker (position 133 within the consensus sequence... sequence (Figure 2B, upper part) in the region down- stream to the A-rich linker, clearly confirming... the size of an A-rich stretch and downstream TSD size. The insertion ... |
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Source: Ast, Gil - Department of Molecular Genetics and Biochemistry, Tel Aviv University |
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Collection: Biology and Medicine |
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| 43 | GENOME-WIDE COMPUTATIONAL ANALYSIS OF SMALL NUCLEAR RNA GENES OF ORYZA SATIVA (INDICA AND JAPONICA) | ||
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Summary: monocot specific MSPs upstream to the USE motif. Detailed analysis results including all multiple sequence... validation of the predicted gene was carried out by analysis of the promoter sequence (upstream 500 bp... ). The extracted upstream sequences were aligned ... |
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Source: Wong, Limsoon - Department of Computational Science, National University of Singapore |
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Collection: Computer Technologies and Information Sciences |
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| 44 | Searching a DNA sequence using the matchPattern method (work in progress) | ||
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Summary: Searching a DNA sequence using the matchPattern method (work in progress) Herv´e Pag`es November 7... , 2006 Contents 1 Load a genome 1 2 Find patterns in a DNA sequence 2 3 A note on performance 4 1 Load... M" "chrX" "upstream1000" "upstream2000" "upstream5000" (use the '$' or '[[' ... |
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Source: Bain, Mike - School of Computer Science and Engineering, University of New South Wales |
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Collection: Computer Technologies and Information Sciences |
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| 45 | FlowRecommender: A Workflow Recommendation Technique for Process Ji Zhang1, Qing Liu2 and Kai Xu2 | ||
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Summary: i n. An influencing upstream sub-path is represented as an ordered sequence of nodes in the pattern... and its matched influencing upstream sub-path p have the same sequence of nodes, though these nodes may... are quite limited in that they can- not produce a correct recommendation of the next node if the ... |
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Source: Xu, Kai "Kevin" - National ICT Australia & School of Information Technologies, University of Sydney |
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Collection: Computer Technologies and Information Sciences |
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| 46 | JOURNAL OF VIROLOGY, Jan. 2009, p. 927939 Vol. 83, No. 2 0022-538X/09/$08.00 0 doi:10.1128/JVI.02060-08 | ||
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Summary: that this upstream A-rich sequence supports the function of the H4a H4b region (Fig. 6A and B). Compared to parental... additional upstream sequence composing a portion of the stem. SELEX of the combined H4a and H4b region in sat... the H4a loop and upstream flanking ... |
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Source: Simon, Anne - Department of Cell Biology and Molecular Genetics, University of Maryland at College Park |
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Collection: Biology and Medicine |
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| 47 | Analysis of SD sequences in completed microbial genomes: Non-SD-led genes are as common as SD-led genes | ||
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Summary: according to the gene annotations provided by the NCBI database and then extracted their upstream sequences... . These upstream sequences, each of which is 50 bases long including the start codon, forms the 5UTR sequence... sequence content In order to understand the ... |
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Source: Halgamuge, Saman - Department of Mechanical Engineering, University of Melbourne |
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Collection: Engineering ; Biotechnology |
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| 48 | Proc. Nati. Acad. Sci. USA Vol. 81, pp. 7865-7869, December 1984 | ||
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Summary: ) to a set of derivatives that systematically delete sequences upstream from the his3 gene are introduced... and cellular enhancer sequences of higher eukaryotes. In addition, it appears that the his3 and gal upstream... base pairs (bp) from the initiation site of RNA synthesis (1-10). Such ... |
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Source: |
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Collection: Biology and Medicine |
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| 49 | MOPAC: MOtif Finding by Preprocessing and Agglomerative Clustering from Microarrays | ||
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Summary: objective is to find the common motifs that are present in at least some of the upstream sequences... that are shared by the upstream sequences of the genes that are co-expressed. There could exist short sequences... on probabilistic sequence models. The former ... |
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Source: Ioerger, Thomas R. - Department of Computer Science and Engineering, Texas A&M University |
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Collection: Computer Technologies and Information Sciences |
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| 50 | Paper No.981498 Duplication of this preprint for publication or sale is strictly prohibited without prior written permission | ||
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Summary: velocities for reference. Note that four breaks were manually inserted in the upstream sequence to improve... upstream and downstream length is less than 15 cm (0.5 ft) for 75 percent of the vehicles in the sequence... Matches in the sequence up to and including the given matrix element. ... |
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Source: Coifman, Benjamin - Departments of Electrical Engineering & Civil and Environmental Engineering and Geodetic Science, Ohio State University |
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Collection: Engineering ; Energy Storage, Conversion and Utilization |
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| 51 | Vehicle Reidentification and Travel Time Measurement on Congested Freeways | ||
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Summary: measurements. To illustrate this point, Figure 3A shows a sequence of upstream length measurements with dark... .g., from a platoon) rapidly becomes distinct and the sequences measured at an upstream detector station can... then compares the upstream offset of a given consecutive ... |
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Source: Coifman, Benjamin - Departments of Electrical Engineering & Civil and Environmental Engineering and Geodetic Science, Ohio State University |
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Collection: Engineering ; Energy Storage, Conversion and Utilization |
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| 52 | Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes | ||
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Summary: , often associated with upstream sequences, is the occurrence of unusual DNA structures, such as curved... ). In the second round of screening, only those sequences that extend 500 bp upstream and 500 bp down- stream... was repeated five times, to produce different shuffled sequences, ... |
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Source: Bansal, Manju - Molecular Biophysics Unit, Indian Institute of Science, Bangalore |
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Collection: Biology and Medicine |
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| 53 | First Demonstration of Symmetric 10-Gb/s Access Networks Architecture based on Silicon Microring Single Sideband | ||
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Summary: Microring Single Sideband Modulation for Efficient Upstream Signal Re-modulation Lin Xu1 , Kishore Padmaraju... an optical access network utilizing downstream silicon microring single-sideband modulation and upstream... the destructive port of the delay-interferometer demodulating the upstream signal. OCIS codes: (060.2330) ... |
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Source: Bergman, Keren - Department of Electrical Engineering, Columbia University |
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Collection: Engineering |
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| 54 | Planar imaging measurements to study the effect of spanwise structure of upstream turbulent boundary | ||
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Summary: Planar imaging measurements to study the effect of spanwise structure of upstream turbulent... for Aeromechanics Research, University of Texas at Austin, TX 78712 The relationship between the upstream boundary... - wise strips of elongated regions of uniform momentum is detected in the upstream boundary layer |
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Source: Clemens, Noel T. - Department of Aerospace Engineering & Engineering Mechanics, University of Texas at Austin |
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Collection: Engineering |
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| 55 | Sink-to-Sensors Congestion Ramanuja Vedantham | ||
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Summary: receive the message through the fastest available path upstream of it in terms of delay It should... Receiving rate: Rate of successful reception from an upstream node Sending rate: Rate of forwarding from... on receiving rate of downstream receivers Receiving rate of a receiver is based on the sending rate of upstream |
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Source: Sivakumar, Raghupathy - School of Electrical and Computer Engineering, Georgia Institute of Technology |
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Collection: Engineering |
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| 56 | American Fisheries Society Symposium 56:319335, 2007 Copyright by the American Fisheries Society 2007 | ||
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Summary: , the upstream river segment is long and has areas that are suitable for spawning during normal and wet... hydrologic conditions. We evaluated demographic and genetic consequences of upstream and downstream passage... to the upstream subpopulation, it would also preserve alleles from the down- stream subpopulation by propagating |
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Source: Jager, Henriette I. - Environmental Sciences Division, Oak Ridge National Laboratory |
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Collection: Environmental Sciences and Ecology |
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| 57 | Delay analysis of Ethernet passive optical networks with | ||
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Summary: of an upstream transmission, and ii a Markov chain-based approach requiring the numerical solution of a system... of equations for reporting at the beginning of an upstream transmission. Reporting at the beginning, which has... of an upstream transmission for a small number of ONUs. Both of these analyses are fundamentally ... |
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Source: Reisslein, Martin - Department of Electrical Engineering, Arizona State University |
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Collection: Engineering |
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| 58 | Translational control in positive strand RNA plant viruses Theo W. Dreher a,*, WR Allen Miller b,c | ||
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Summary: , upstream of the movement protein gene, and the 148-nt sequence, IRES CP,148 CR , upstream of and including... in an A-rich tract of purines, and (GAAA)16 had maximum activity (Dorokhov et al., 2002). Its mechanism... to recruit 40S ribosome subunits. Immediately upstream of the ... |
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Source: Miller, W. Allen - Departments of Plant Pathology & Biochemistry, Biophysics and Molecular Biology, Iowa State University |
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Collection: Biology and Medicine |
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| 59 | Mol. Biol. Evol. 16(4):502511. 1999 1999 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038 | ||
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Summary: variable poly(A) or A-rich tails at their 3 ends, while other lineages possess more precise sequences... site in all arthropods. Sequences upstream and downstream of the in- sertion site are indicated... ) that the attachment of R2 sequences to the upstream target ... |
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Source: Malik, Harmit - Basic Sciences Division, Fred Hutchinson Cancer Research Center, University of Washington at Seattle |
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Collection: Biology and Medicine |
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| 60 | SCAP: Smart Caching in Wireless Access Points to Improve P2P Streaming , Songqing Chen2 | ||
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Summary: stations in the WLAN, including the AP, share the entire upstream and downstream bandwidth in the network... for delivery due to the competition among physical stations [14]. The extra upstream traffic in- troduced by P2... P streaming aggravates the channel competi- tion between upstream and downstream traffic remarkably |
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Source: Chen, Songqing - Department of Computer Science, George Mason University; Ohio State University, Computer Science and Engineering, High Perfomance Computing and Software Lab |
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Collection: Computer Technologies and Information Sciences |
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| 61 | SUPPLEMENTARY MATERIAL The Shared Motif Method (SMM) Algorithm | ||
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Summary: .ncbi.nih.gov/refseq/LocusLink/homol_seq_pairs) and matched these with the human RefSeq IDs. Human and mouse upstream sequences, from July 2003 and October... for dSM with and without 5' UTRs To check whether analysis of upstream sequences 5' to transcription... blocks discovered by the SMM. d: dSM was ... |
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Source: Castillo-Davis, Cristian I. - Department of Biology, University of Maryland at College Park |
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Collection: Biology and Medicine |
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| 62 | Potential Gene Conversion and Source Genes for Recently Integrated Alu Elements | ||
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Summary: with the consensus sequence. Stability of the Middle A-Rich Region in Alu Ya5 Members The oligo-dA-rich tails... , analysis of the middle A-rich region of the different Alu Ya5 members indicates a tendency toward expansion... and middle A-rich regions of Alu elements have been shown ... |
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Source: Batzer, Mark A. - Department of Biological Sciences, Louisiana State University |
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Collection: Biotechnology ; Biology and Medicine |
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| 63 | BN Danforth Arginine Kinase primers for bees (12/30/2003) | ||
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Summary: of primers based on the 5' end of the primer in the honey bee coding sequence, Apis mellifera. The entire... Apis mellifera coding sequence for Arginine Kinase is roughly 1070 bp in length. PCR conditions Arg... Kfor1 and ArgKrev1 has not effectively amplified the upstream fragment in long tongue bees. ArgKfor2 |
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Source: Danforth, Bryan Nicholas - Department of Entomology, Cornell University |
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Collection: Environmental Sciences and Ecology ; Biology and Medicine |
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| 64 | Proc. NatL Acad. Sci. USA Vol. 79, pp. 7385-7389, December 1982 | ||
|
Summary: are determined in vivo, sequences more than 100 base pairs upstream from the mRNA coding region are implicated... DNAs, these upstream sequences seem to play no role. Here, the critical sequence, the TATA box... to the 5' endofthe structural gene. Second, the most ... |
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Source: |
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Collection: Biology and Medicine |
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| 65 | APPLIED AND ENVIRONMENTAL MICROBIOLOGY, July 2009, p. 46204623 Vol. 75, No. 13 0099-2240/09/$08.00 0 doi:10.1128/AEM.00582-09 | ||
|
Summary: was 3.84 and the mean Chao1 HydA richness was 187 unique OTUs (see Fig. S1a in the supplemental material... the phylogenetic coherence of novel substitutions and insertions in and upstream of L1 sequence motif. Cluster... Fe] hydrogenase large- subunit protein sequences (HydA) present in ... |
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|
Source: Colorado School of Mines, Center for Experimental Study of Subsurface Environmental Processes |
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|
Collection: Environmental Management and Restoration Technologies ; Geosciences |
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| 66 | Vol. 166, No. 3JOURNAL OF BACTERIOLOGY, June 1986, p. 1113-1117 0021-9193/86/061113-05$02.00/0 | ||
|
Summary: leuP from an upstream open reading frame. Although these A+T-rich sequences share little homology... for sequences of 100 bp or more lying upstream of promoters of E. coli and its bacteriophages (6, 10, 12, 19... extensive region ofA+T-rich sequence upstream of the ... |
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|
Source: Haughn, George - Department of Botany, University of British Columbia |
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Collection: Biology and Medicine |
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| 67 | Passive Optical PassiveOpticalNetworks Contents | ||
|
Summary: .g., in ADSL, from 25 KHz in upstream, and from 240 KHz in downstream) Voice Data #12;Passive... Upstream Traffic ODN PON Overview OLT: Optical Line Terminator ONU: Optical Network Unit ODN: Optical... -to-multipoint network The OLT manages the whole bandwidth · Upstream multipoint-to-point network ONUs transmit only |
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|
Source: Mellia, Marco - Dipartimento di Elettronica e Telecomunicazioni, Politecnico di Torino |
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Collection: Engineering |
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| 68 | Genetica 104: 6776, 1998. 1998 Kluwer Academic Publishers. Printed in the Netherlands. | ||
|
Summary: A or A-rich sequence. As noted by Furano and Usdin (Furano & Usdin, 1995), even recent insertions often... indicated that these regions are not required for termination or processing of the RNA. PolyA or very A-rich... transcription is forced, RNA processing creates A-rich 3 ends some of which may be ... |
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|
Source: Christensen, Shawn M. - Department of Biology, University of Texas at Arlington |
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Collection: Biology and Medicine |
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| 69 | Human testis expresses a specific poly(A)-binding protein. | ||
|
Summary: ,51). However this repression might be specific for PABP1 which contains an A-rich sequence in its 5... the human PABP3 does not contain any A-rich sequence in its 5'UTR. Therefore, PAPB3 might represent... is intronless with a transcription start site 61 nt upstream from the initiation ... |
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|
Source: Ecole Polytechnique, Centre de mathématiques |
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|
Collection: Mathematics |
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| 70 | UTR Reconstruction and Analysis Using Genomically Aligned EST Zhengyan Kan 1 , Warren Gish 2 , Eric Rouchka 1 , Jarret Glasscock 2 , and David States 1 | ||
|
Summary: for canonical polyA patterns, AATAAA and ATTAAA. 50 nts of downstream sequence is searched for Arich region... on 3 factors size of the cluster, polyA signal, and downstream Arich region. By default, the score... addition and the presence of A rich region (A) results in a ... |
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|
Source: Rouchka, Eric - Department of Computer Engineering and Computer Science, University of Louisville |
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|
Collection: Computer Technologies and Information Sciences |
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| 71 | UTR Reconstruction and Analysis Using Genomically Aligned EST Zhengyan Kan1 | ||
|
Summary: for canonical poly-A patterns, AATAAA and ATTAAA. 50 nts of downstream sequence is searched for A-rich region... on 3 factors - size of the cluster, poly-A signal, and downstream A-rich region. By default, the score... addition and the presence of A- rich region (A) results in a 2-point ... |
|||
|
Source: Rouchka, Eric - Department of Computer Engineering and Computer Science, University of Louisville |
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Collection: Computer Technologies and Information Sciences |
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| 72 | Biochem. J. (1997) 325, 645651 (Printed in Great Britain) 645 Molecular characterization and expression of Onchocerca volvulus | ||
|
Summary: . and carries the nematode-specific spliced leader sequence SL1 at its 5h end, 236 nucleotides upstream... (A)+ tail (Figure 1). None of the cDNA clones analysed contained an A-rich stretch within the 3h... and sequenced. The gene is composed of 13 exons and 12 introns and spans 4065 bp. The first intron is ... |
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|
Source: Fairlamb, Alan - Division of Biological Chemistry and Molecular Microbiology, University of Dundee |
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Collection: Biology and Medicine |
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| 73 | Gene Deletion with Drug Resistant Cassettes. To make a deletion of a gene with a drug resistant cassette, the cassette is amplified from | ||
|
Summary: of sequence just upstream and downstream from the ORF (including the ATG start codon and the stop codon... . Design primers: For the upstream oligo: 45 bp of directly upstream sequence of the yeast open reading... ) of a gene of interest, the second contains common ... |
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|
Source: Roth, David B. - Langone Medical Center, New York University |
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Collection: Biology and Medicine |
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| 74 | Power Allocation and Self-Scheduling for Cooperative Transmission Using Opportunistic | ||
|
Summary: @ece.gatech.edu Abstract--This paper introduces methods for broadcasting and upstream routing in ad hoc networks that use... the thresholds as a function of level. The upstream routing method applies to the wireless sensor network... the message upstream to the collection node. Enhancements to OLACRA are considered to further ... |
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|
Source: Ingram, Mary Ann - School of Electrical and Computer Engineering, Georgia Institute of Technology |
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Collection: Engineering |
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| 75 | Supplementary Results Table 1. High-and lower-confidence imprinted gene candidates. | ||
|
Summary: .70 × 10-2 upstream 60:0 LTR ERVL±2 10.08 11.31 (21.28) 34.03 (55.48) 7.28 × 10-3 upstream 9:8 Sp11 -9.75 0... .34 (1.09) 0.15 (0.53) 1.64 × 10-2 upstream 100:10 AluJ±2 9.16 61.09 (228.98) 193.30 (372.53) 1.63 × 10... -2 upstream 5:4 NFuE11 9.14 0.04 (0.21) 0.13 (0.33) 6.88 × 10-2 downstream 0:5 MIR32 ... |
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|
Source: Hartemink, Alexander - Center for Bioinformatics and Computational Biology & Department of Computer Science, Duke University |
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|
Collection: Biotechnology ; Computer Technologies and Information Sciences |
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| 76 | The Geography of Conflict in International River Basins Lucas Beck | ||
|
Summary: countries. We develop a hydropolitical model that accounts for how upstream countries exercise power... upstream or downstream river basin dominance are limiting cases of the general model. We demonstrate... upstream/downstream configurations. Keywords: Transboundary water allocation, Formal Model, Geography |
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|
Source: Siegfried, Tobias - Lamont-Doherty Earth Observatory & School of International and Public Affairs, Columbia University |
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|
Collection: Environmental Sciences and Ecology |
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| 77 | Copyright 2000 by the Genetics Society of America NeSL-1, an Ancient Lineage of Site-Specific Non-LTR Retrotransposons | ||
|
Summary: binding cysteine- histidine motifs upstream of the RT domain are numbered and their sequences are shown... unlike the variable length A-rich tails seen in many other non-LTR elements.aspartate is part... protease domain upstream of the RT do-sequenced contained diagnostic nucleotide ... |
|||
|
Source: Malik, Harmit - Basic Sciences Division, Fred Hutchinson Cancer Research Center, University of Washington at Seattle |
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|
Collection: Biology and Medicine |
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| 78 | Regulatory signals Project Assignment Bioinformatics module 2009 | ||
|
Summary: , to specific sites upstream, downstream or at introns within the gene's coding sequence. In this project we... to the target one. The length of the upstream sequences should be at least 1000 for a human and 300... for known motifs. These motifs are a few base-pair long consensus ... |
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|
Source: Goldschmidt, Christina - Department of Statistics, University of Warwick |
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|
Collection: Mathematics |
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| 79 | DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo | ||
|
Summary: midpoint and an A-rich region on the 3 end. This pattern is detectable to almost 200 bp on each side... have a distinct pattern of a T- rich region on the top strand 5 of the target site midpoint and an A-rich... intrinsic sequence specificity, and sites recovered from in vivo transposition events, to characterize |
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|
Source: Mularoni, Loris - Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University |
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Collection: Biology and Medicine |
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| 80 | HIV-1 primer annealing The annealing mechanism of HIV-1 reverse transcription primer onto the | ||
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Summary: -rich anticodon of the tRNA #12;HIV-1 primer annealing 4 and an A-rich loop located immediately upstream from... described (18). The PBS (18 nucleotides) and the HIV-1 A-rich loop (25 nucleotides) were purchased from... in figure 1. The HIV-1 viral RNA fragment (65 nucleotides) that contains both the PBS and the HIV-1 ... |
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|
Source: Ecole Polytechnique, Centre de mathématiques |
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|
Collection: Mathematics |
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| 81 | Archives of Biochemistry and Biophysics 435 (2005) 347362 www.elsevier.com/locate/yabbi | ||
|
Summary: are (A-T)-rich and have an A-rich (non-template strand) core promoter sequence ele- ment downstream of +1... - tion factor/upstream sequence factors 1 and 2 [13,32]. The general transcription factor TFIIB includes... groove of DNA just upstream of the TATAAAAG box [27,49]. The TFIIB ... |
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|
Source: Last, Robert L. - Department of Biochemistry and Molecular Biology, Michigan State University |
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Collection: Biology and Medicine |
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| 82 | JOURNAL OF VIROLOGY, Dec. 1993, p. 7705-7710 0022-538X/93/1 27705-06$02.00/0 | ||
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Summary: , 32, 34). To specifically amplify BPV sequences, the upstream PCR primer PCR5 corresponded to BPV nt... the upstream primer and the proposed 3' end of mutant RNA. The results of sequence analysis of the cDNA clones... of a signal controlling polyadenylation at the upstream sites. There ... |
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|
Source: DiMaio, Daniel - Departments of Genetics & Molecular Biophysics and Biochemistry, Yale University |
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|
Collection: Biology and Medicine |
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| 83 | DOI: 10.1126/science.1191244 , 432 (2010);329Science | ||
|
Summary: on A-rich stretches (Fig. 1A) (8). These data sets are notyetsaturated:Whereasformostgenes(11,516or 73... tend to be T-rich throughout, except for a very A-rich eight-nucleotide region just after the cleavage... A addition site (red arrow), and T-rich region downstream of cleavage site. The A-rich peak downstream of "no |
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|
Source: Harvard University, Center for Cancer Systems Biology |
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|
Collection: Biology and Medicine |
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| 84 | JOURNAL OF BACTERIOLOGY, 0021-9193/01/$04.00 0 DOI: 10.1128/JB.183.15.45714579.2001 | ||
|
Summary: - scription factor. This approach predicted OxyR binding sites upstream of dsbG, encoding a periplasmic... disulfide bond chaperone-isomerase; upstream of fhuF, encoding a protein required for iron uptake... centered 54 bp upstream of the dsbG gene and 238 bp upstream of a known OxyR binding site in the ... |
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|
Source: Storz, Gisela - Cell Biology and Metabolism Branch, National Institute of Child Health and Human Development |
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|
Collection: Environmental Sciences and Ecology ; Biology and Medicine |
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| 85 | Prediction of Splice Sites in Plant Pre-mRNA from Sequence Properties | ||
|
Summary: involving U or A-rich tracts upstream of the normal 3H splice site and upstream of a cryptic site at base... than the native site (0.964). The A-rich insert (pALA1) also improved splicing ef®ciency, which... , insertion of Adh1-S intron 1 internal sequences (pALXI14) resulted in splicing ... |
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|
Source: Brendel, Volker - Departments of Genetics, Development and Cell Biology & Statistics, Iowa State University |
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|
Collection: Biotechnology |
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| 86 | CSE 4153/6153 Assignment 1 Solutions Fall 2008 1. What are the seven network layer in the OSI model? Briefly (one or two lines) explain their functions | ||
|
Summary: to send 20 bits per symbol. The receiver needs to differentiate between 220 different bit sequences... and cable Internet access? Highlight differences in both upstream and downstream links. ADSL employs... upstream and downstream links are shared in cable) Upstream and downstream bandwidth can be ... |
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|
Source: Ramkumar, Mahalingam - Department of Computer Science, Mississippi State University |
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|
Collection: Computer Technologies and Information Sciences |
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| 87 | Genome Regions Involved in Multiple Regulatory Pathways Identified Using GSEL, a Genome-Wide Database of Regulatory Sequence Elements of | ||
|
Summary: to represent a group of conserved overrepresented sequence elements, identified in the upstream regions of co... of interest and of the upstream region that precedes it. The second table lists putative regulatory sequence... -Wide Database of Regulatory Sequence Elements of Geobacter ... |
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|
Source: Lovley, Derek - Department of Microbiology, University of Massachusetts at Amherst |
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|
Collection: Environmental Management and Restoration Technologies ; Biology and Medicine |
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| 88 | January 29, 2004 2:46 WSPC/Trim Size: 9in x 6in for Review Volume practicalbioinformatician TECHNIQUES FOR RECOGNITION OF | ||
|
Summary: , a sequence segment consisting of 100 nucleotides upstream and 100 nucleotides downstream is extracted... . For illustration, our example sequence segment is coded into this record: f..., ``ATG=4'', ..., ``upstream ATG=1... and Wong 515 take the sequence segments of 100 nucleotides ... |
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|
Source: Wong, Limsoon - Department of Computational Science, National University of Singapore |
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|
Collection: Computer Technologies and Information Sciences |
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| 89 | January 29, 2004 2:46 WSPC/Trim Size: 9in x 6in for Review Volume practical-bioinformatician TECHNIQUES FOR RECOGNITION OF | ||
|
Summary: RNA sequences. From these sequences, only those with an annotated TIS, and with at least 10 upstream nu... of a true TIS. At each of these ATG sites, a sequence segment consisting of 100 nucleotides upstream and 100... the sequence segment centered at the second ATG ... |
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|
Source: Wong, Limsoon - Department of Computational Science, National University of Singapore |
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|
Collection: Computer Technologies and Information Sciences |
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| 90 | Guidelines for selecting the translation start site 1. Definitions | ||
|
Summary: Extension of the ORF - assessing alternate in-frame start sites Upstream ORFs (uORF) vs. primary ORF (p... conservation by observing sequence similarity for orthologous loci at the level of the genome sequence between... -house tools provided to support curator staff. a. Strong conservation: genome sequence ... |
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|
Source: Lippincott-Schwartz, Jennifer - Cell Biology and Metabolism Branch, National Institute of Child Health and Human Development |
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Collection: Biology and Medicine |
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| 91 | Genetica 107: 149161, 1999. 2000 Kluwer Academic Publishers. Printed in the Netherlands. | ||
|
Summary: sequence repeats of varied se- quence complexity. The oligo-dA rich tails and middle A rich regions of Alu... primers in the upstream direction of Ya8 to avoid amplification problems through the A-rich tail. Using... - lined. The length of the oligo-dA ... |
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|
Source: Batzer, Mark A. - Department of Biological Sciences, Louisiana State University |
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|
Collection: Biotechnology ; Biology and Medicine |
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| 92 | MOLECULAR AND CELLULAR BIOLOGY, 0270-7306/01/$04.00 0 DOI: 10.1128/MCB.21.20.68706881.2001 | ||
|
Summary: was then introduced at 30; this changed the upstream sequence TATCTACAA to TATATATAA. Plasmid pFL20/18SPst5.8Si4... , containing full- length S. pombe ribosomal DNA (rDNA) and 500 bp of upstream sequence producing a sequence... (62). Figure 1A shows the upstream ... |
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|
Source: Lowe, Todd M. - Department of Biomolecular Engineering, University of California at Santa Cruz |
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|
Collection: Biology and Medicine ; Biotechnology |
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| 93 | Catching RNA polymerase in the act of binding: Intermediates in transcription illuminated | ||
|
Summary: promoters in E. coli. However, DNA sequences farther upstream (up regions) of the start site... , it is often A-rich, which can facilitate the bending of DNA du- plexes. DNA wrapping around RNAP during... RNAP to specific sequences on the genomic DNA (promoters) that mark the beginning of a gene or group |
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|
Source: Erie, Dorothy A. - Department of Chemistry, University of North Carolina at Chapel Hill |
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|
Collection: Chemistry ; Biology and Medicine |
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| 94 | 2002-09 Sami Khuri Biology Terms and Model Organisms | ||
|
Summary: uracil deoxyribose ribose nucleotide double helix DNA sequence upstream downstream gene exons introns... expression splicing human genome project splice donor site splice acceptor site consensus sequence |
|||
|
Source: Khuri, Sami - Department of Computer Science, San José State University |
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|
Collection: Computer Technologies and Information Sciences |
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| 95 | Abbreviations A adenine | ||
|
Summary: SSU rRNA or ss rRNA small subunit rRNA T thymidine TATA-box thymidine and adenine rich sequence... F TFS transcription factor S, elongation factor tRNA transfer RNA UAS upstream activating... sequence UV ultraviolet radiation #12;#12; |
|||
|
Source: Groningen, Rijksuniversiteit - Centre for Ecological and Evolutionary Studies, Department of Marine Benthic Ecology and Evolution, |
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|
Collection: Biology and Medicine ; Environmental Sciences and Ecology |
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| 96 | Introducing a third domain of life In the late fifties Francis Crick proposed to classify and organize the living organisms based on a | ||
|
Summary: with TAFs) to a T+A-rich sequence, known as the TATA-box (see also `Archaeal promoters' section... , a TFB responsive element, is a 6 nucleotide sequence localized immediately upstream TATA-box and found... not essential. The presence of an upstream sequence often ... |
|||
|
Source: Groningen, Rijksuniversiteit - Centre for Ecological and Evolutionary Studies, Department of Marine Benthic Ecology and Evolution, |
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|
Collection: Biology and Medicine ; Environmental Sciences and Ecology |
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| 97 | cDNAs Derived from Primary and Small Cytoplasmic Alu (scAlu) Transcripts | ||
|
Summary: -directed Alu Transcripts #12;to within one base of the middle A-rich region of the Alu sequence. It is worth... region, middle A-rich region, oligo(dA) tails and genomic loci-derived non-repetitive 3H regions (Figure... a duplicated locus, the copies of which have begun to vary, particularly in the 3H A- ... |
|||
|
Source: Batzer, Mark A. - Department of Biological Sciences, Louisiana State University |
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|
Collection: Biotechnology ; Biology and Medicine |
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| 98 | 856 NATURE |VOL 409 |15 FEBRUARY 2001 |www.nature.com Computational comparison of two draft | ||
|
Summary: searched for motifs for two DNA-binding proteins (EGR-1 and CRX) in 4-kb upstream sequences of 3,352 genes... and compared their abundances with those found in random 4-kb sequences and available positive control upstream... -nr sequence rather than Cel for upstream ... |
|||
|
Source: Bulyk, Martha L. - Division of Genetics, Brigham and Women's Hospital, Harvard University; Church, George M. - Wyss Institute for Biologically Inspired Engineering & Department of Genetics, Harvard University |
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|
Collection: Biology and Medicine ; Biotechnology |
|||
| 99 | RpoD Promoters in Campylobacter jejuni Exhibit a Strong Periodic Signal Instead of a 235 Box | ||
|
Summary: sequence is unusual compared to other bacteria, in that the region upstream of the TATA-box does not con... , a logo plot of the aligned sequences showed a periodic signal upstream of the TATA-box, and this period... structure upstream of the 235 region in promoter function, and often ... |
|||
|
Source: Ussery, David W. - Center for Biological Sequence Analysis, Institute of Biotechnology, Danmarks Tekniske Universitet |
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|
Collection: Biotechnology |
|||
| 100 | IEEE Communications Magazine April 20012 How Network Asymmetry Affects TCP | ||
|
Summary: to customer premises. As such, the upstream bandwidth of the cable plant, from the customer premises out... , upstream communica- tion on the same technology may simply be impossible; old cable plants... , for upstream connectivity. Figure 1 depicts such a setup in the context of a "wire- less" cable modem network |
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|
Source: Narasayya, Vivek - Data Management, Exploration and Mining Group, Microsoft Research; Padmanabhan, Venkata N. - Microsoft Research |
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|
Collection: Computer Technologies and Information Sciences |
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