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Sample search results for: a-to-i rna editing

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1 LETTER TO THE EDITOR RNA editing of a miRNA precursor
 

Summary:  molecules are subject to posttranscriptional modification by A-to-I RNA editing in vivo. The observed... ). The enzymes responsible for A-to-I editing, the adenosine deaminases acting on RNA (ADARs), are ubiq- uitously... human and mouse ...

  

Source: Mullen, Sean P. - Department of Biological Sciences, Lehigh University

 

Collection: Biology and Medicine

 
2 A-to-I RNA Editing: Recent News and Residual Mysteries*
 

Summary:  A-to-I RNA Editing: Recent News and Residual Mysteries* Published, JBC Papers in Press, November 20... of the first RNA-specific adenosine deaminase, ADAR1 (4, 5), a family of A-to-I editing enzymes (ADAR1­3) has... in fish genomes (13). Subsequently, the subfamily ...

  

Source: Mullen, Sean P. - Department of Biological Sciences, Lehigh University

 

Collection: Biology and Medicine

 
3 RNA editing by A-to-I modification in pre-mRNAs constitutes a major mechanism for the generation of RNA and protein diversity in
 

Summary:  RNA editing by A-to-I modification in pre-mRNAs constitutes a major mechanism for the generation... of neurotransmitter receptors in the central nervous system. A-to-I RNA editing can also create or destroy pre-mRNA... recoding events of ...

  

Source: Lopresti, Daniel P. - Department of Computer Science and Engineering, Lehigh University

 

Collection: Computer Technologies and Information Sciences

 
4 ADAR editing in double-stranded UTRs and other noncoding RNA sequences
 

Summary:  ­81 7 Palladino, M.J. et al. (2000) A-to-I pre-mRNA editing in Drosophila is primarily involved in adult... . and Nishikura, K. (2005) ADAR gene family and A-to-I RNA editing: diverse roles in posttranscriptional gene... . et al. (2004) Widespread ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
5 Cell, Vol. 123, 249263, October 21, 2005, Copyright 2005 by Elsevier Inc. DOI 10.1016/j.cell.2005.08.033 Regulating Gene Expression
 

Summary:  retention. Interestingly, CTN- RNA is adenosine-to-inosine edited (A-to-I) in its 3#UTR. Depleting CTN-RNA... Is A-to-I Edited in Its 3 UTR RNAs such as Xist and hsr--n as well as the newly identified CTN-RNA... that exhib- ited ...

  

Source: Zhang, Michael Q.- Watson School of Biological Sciences, Cold Spring Harbor Laboratory

 

Collection: Biotechnology

 
6 Short communication Age-related gene-specific changes of A-to-I mRNA editing in the human brain
 

Summary:  Short communication Age-related gene-specific changes of A-to-I mRNA editing in the human brain A... , Boston, MA 02115, USA Adenosine-to-inosine (A-to-I) RNA editing is a post-transcrip- tional processing... in the CNS (Akabas and Ronald, 2004). GABRA3 ...

  

Source: de Magalhães, João Pedro - School of Biological Sciences, University of Liverpool

 

Collection: Biology and Medicine

 
7 miRNA Editing--We Should Have Inosine This Coming
 

Summary:  ), who found evi- dence for A-to-I editing events in the primary transcript of miRNA-22 (pri- miR-22... is through adenosine-to-inosine (A-to-I) editing, a reaction catalyzed by adenosine deaminases that act... ., 2007). Similar to previous studies, they identified mammalian ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
8 2005 EUROPEAN MOLECULAR BIOLOGY ORGANIZATION EMBO reports VOL 6 | NO 9 | 2005 Letter from the editor: adenosine-to-inosine RNA
 

Summary:  ,Israel,2,3 Tel Aviv University,and 4 Compugen Ltd,Tel Aviv,Israel Adenosine-to-inosine (A-to-I) RNA editing... in a mature mRNA. Intriguingly, A-to-I edit- ing of Alu repeats in the primate genome is a unique phenomenon... .Adenosine deaminases that act on ...

  

Source: Eisenberg, Eli - School of Physics and Astronomy, Tel Aviv University

 

Collection: Materials Science ; Physics

 
9 RNA editing: a driving force for adaptive Willemijn M. Gommans Sean P. Mullen and Stefan Maas*
 

Summary:  . Substantial transcriptome and proteome variability is generated by A-to-I RNA editing through site... -modification RNA editing (termed A-to-I RNA editing) has received particular attention with respect to highly... for ...

  

Source: Lehigh University, Department of Biological Sciences; Mullen, Sean P. - Department of Biological Sciences, Lehigh University

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology

 
10 Evidence for large diversity in the human transcriptome created by Alu RNA editing
 

Summary:  -explored mechanism for transcriptome diversity exists, known as RNA editing. Adenosine-to-inosine (A-to-I) RNA... of human genes are subjected to A-to-I RNA editing, mainly within their untranslated regions and introns (2... for creating ...

  

Source: Church, George M. - Wyss Institute for Biologically Inspired Engineering & Department of Genetics, Harvard University

 

Collection: Biotechnology

 
11 A R T I C L E S RNA editing by members of the double-stranded RNA (dsRNA)-
 

Summary:  leads to site-specific conversion of A-to-I in precursor messenger RNAs1. ADAR-mediated RNA editing... , R.A. A-to-I pre-mRNA edit- ing in Drosophila is primarily involved in adult nervous system function... approach that overcomes these challenges. We mapped 12,723 ...

  

Source: Eisenberg, Eli - School of Physics and Astronomy, Tel Aviv University

 

Collection: Materials Science ; Physics

 
12 Supplementary data Supplementary data associated with this article can be
 

Summary:  and Sackler School of Medicine, Tel Aviv University, Tel Aviv 52621, Israel A-to-I RNA editing is common... . Introduction A-to-I RNA editing is the site-specific modification of adenosine to inosine in stem... of SINEs. Comparative search for ...

  

Source: Eisenberg, Eli - School of Physics and Astronomy, Tel Aviv University; Sorek, Rotem - Department of Molecular Genetics, Weizmann Institute of Science

 

Collection: Biology and Medicine ; Materials Science ; Physics

 
13 Bioinformatic Approaches for Identification of A-to-I Editing Sites
 

Summary:  The first discoveries of mammalian A-to-I RNA editing have been serendipitous. In conjunction with the fast... -of-the-art of these methods and discuss future directions. Keywords A-to-I RNA editing Á Alu repeats Á Bioinformatics Á Deep... ...

  

Source: Eisenberg, Eli - School of Physics and Astronomy, Tel Aviv University

 

Collection: Materials Science ; Physics

 
14 Adenosine deamination in human transcripts generates novel microRNA binding sites
 

Summary:  RNAs), and adenosine-to-inosine (A-to-I) editing, generated by adenosine deaminases that act on double-stranded RNA... DNAs, and asked if there was a relationship between A-to-I editing events in the mRNA 30 untranslated regions... (UTRs) and ...

  

Source: Bhattacharya, Debashish - Department of Ecology, Evolution, and Natural Resources, Rutgers University

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine

 
15 Most of the functional groups in a double helix that allow a protein to recognize a specific base pair are in the
 

Summary:  : 257. Athanasiadis A., Rich A., and Maas S. 2004. Widespread A-to-I RNA editing of Alu-containing m... . and Nishikura K. 2005. ADAR gene family and A-to- I RNA editing: Diverse roles in posttranscriptional gene reg... .R., Sztybel D., et al. 2004. ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
16 Genome Analysis Is there any sense in antisense editing?
 

Summary:  ­ antisense RNA-transcript pairs create dsRNA duplexes that undergo extensive A-to-I RNA editing. We studied... for several proposed regulatory mechanisms. RNA editing Adenosine to inosine (A-to-I) ...

  

Source: Eisenberg, Eli - School of Physics and Astronomy, Tel Aviv University; Sorek, Rotem - Department of Molecular Genetics, Weizmann Institute of Science

 

Collection: Biology and Medicine ; Materials Science ; Physics

 
17 Genome Biology 2007, 8:R29 commentreviewsreportsdepositedresearchrefereedresearchinteractionsinformation
 

Summary:  ) RNA editing. A-to-I RNA edit- ing refers to the deamination of selected adenosine residues, altering... of these splice sites is theoretically capable of becoming a bona fide splice site through A-to-I RNA editing... inserts ...

  

Source: Ast, Gil - Department of Molecular Genetics and Biochemistry, Tel Aviv University; Sorek, Rotem - Department of Molecular Genetics, Weizmann Institute of Science

 

Collection: Biology and Medicine

 
18 Tissue-specific modification of gld-2 mRNA in C. elegans: Likely C-to-U editing
 

Summary:  -to-U editing and CDARs, much as it has facilitated the analysis of A-to-I editing and ADARs (Tonkin et al. 2002... Tissue-specific modification of gld-2 mRNA in C. elegans: Likely C-to-U editing LIAOTENG WANG,1... , Wisconsin 53706, USA ABSTRACT Seventeen years after the discovery of ...

  

Source: Kimble, Judith - Department of Biochemistry, University of Wisconsin at Madison; Wickens, Marv - Department of Biochemistry, University of Wisconsin at Madison

 

Collection: Biology and Medicine

 
19 MOLECULAR AND CELLULAR BIOLOGY, 0270-7306/98/$04.00 0
 

Summary:  to 2.7 A-to-I conversions per antigenome (32); this level of deami- nation could compromise... Copyright © 1998, American Society for Microbiology Hepatitis Delta Virus RNA Editing Is Highly Specific... for modification 10 December 1997/Accepted 24 December 1997 RNA editing at adenosine ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
20 www.stke.org/cgi/content/full/OC_sigtrans;2002/133/pe26 Page 1 The term "RNA editing" was first used to describe the insertion of
 

Summary:  . The pre-mRNA encoded by the gene encoding apolipoprotein B is subject to C-to-U editing, and A-to-I... neuronal pre-mRNA sub- strates for A-to-I editing contain an imperfect inverted repeat that allows... (23). Moreover, the pre-mRNA encoding ...

  

Source: Howe, James R.- Department of Pharmacology, Yale University

 

Collection: Biology and Medicine


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21 BIOINFORMATICS RNA e d i t i n g l e v e l i n t h e m o u s e i s d e t e r m i n e d b y t h e
 

Summary:  to inosine (A-to-I) RNA editing is a post- tr ansc r iptional al ter ation of RNA seq u enc es, c atal y z ed... , in order to identify A-to-I editing events. We scanned 128,068 human RNA sequences [ total length 259... A-to-I ...

  

Source: Eisenberg, Eli - School of Physics and Astronomy, Tel Aviv University

 

Collection: Materials Science ; Physics

 
22 Neuron, Vol. 25, 139149, January, 2000, Copyright 2000 by Cell Press The mlenapts
 

Summary:  activity of the single X chromosome in Dro-(A-to-I) RNA editing via a mechanism that apparently sophila... -to-inosine (A-to-I) RNA editing Zaffran et al., 1998). However, little evidence exists for like that first... of melanogaster. Fifth, when analyzing a ...

  

Source: Kalil, Ronald E. - Neuroscience Training Program & W.M. Keck Laboratory for Biological Imaging, University of Wisconsin at Madison

 

Collection: Biology and Medicine

 
23 2011NatureAmerica,Inc.Allrightsreserved. nature structural & molecular biology advance online publication
 

Summary:  -high-throughput sequencing to detect A-to-I editing in numerous computationally predicted RNA targets22. Whole... and ultra-high-throughput sequencing experiments22 have demonstrated that most A-to-I RNA editing occurs... ' in genomic DNA and contribute to numerous ...

  

Source: Papavasiliou, F. Nina - Laboratory of Lymphocyte Biology, Rockefeller University

 

Collection: Biology and Medicine

 
24 RNA in few words Preliminaries EDIT(STEM. STEM) hardness Conclusion Comparing RNA structures with
 

Summary:  RNA in few words Preliminaries EDIT(STEM. STEM) hardness Conclusion Comparing RNA structures... in few words Preliminaries EDIT(STEM. STEM) hardness Conclusion Outline RNA in few words Preliminaries... EDIT(STEM. STEM) hardness Conclusion G. Blin - gblin@univ-mlv.fr ...

  

Source: Blin, Guillaume - Institut d'électronique et d'informatique Gaspard-Monge, Universite de Marne-la-Vallee

 

Collection: Computer Technologies and Information Sciences

 
25 Hindawi Publishing Corporation Journal of Biomedicine and Biotechnology
 

Summary:  is obtained through posttranscriptional processing [20], RNA A-to-I editing [21, 22], selective export... [27] Intron retention or overlap with coding region [30] Postprocessing [20] A-to-I editing [34... , RNA editing, subcellular localization, ...

  

Source: Hornstein, Eran - Department of Molecular Genetics, Weizmann Institute of Science

 

Collection: Biology and Medicine

 
26 Supplementary material Is abundant A-to-I RNA
 

Summary:  1 Supplementary material Is abundant A-to-I RNA editing primate-specific? Eli Eisenberg1,2 , Sergey... mismatches. Alu and the number of potential dsRNAs The vast majority of A-to-I editing detectable using our... . It is surprising to find such a substantial difference in global ...

  

Source: Eisenberg, Eli - School of Physics and Astronomy, Tel Aviv University

 

Collection: Materials Science ; Physics

 
27 Messenger RNA editing in mammals: new members of the APOBEC family
 

Summary:  Given the number of A-to-I mRNA editing substrates, it is logical to ask how common is C-to-U mRNA... ). This frequently modifies the function of the encoded protein, and an emerging theme associated with A-to-I mRNA... of deaminases are shown for the C-to-U [65] and ...

  

Source: Wedekind, Joseph E. - Department of Biochemistry and Biophysics, University of Rochester

 

Collection: Biology and Medicine

 
28 2004 NaturePublishing Group RNA molecules assume a wide variety of secondary and
 

Summary:  RNAs that are involved in RNAi89,90 , as A-to-I modification can destabilize RNA duplex struc- tures. These data hint... ),exhibit a high degree of specificity in their interactions with mRNAs. For example, mRNA editing by ADAR2 is both... ©2004 NaturePublishing Group RNA molecules assume ...

  

Source: Bevilacqua, Philip C.- Department of Chemistry, Pennsylvania State University

 

Collection: Chemistry

 
29 Annu Rev.Neumci. 19%. 19:27-52 Copyrighf8 I996 by Annual Reviews Inc. AI1 righs resewed
 

Summary:  or mechanisms for these diverse examples of tRNA editing. G-ADDITION AND A-TO-I SUBSTITUTION EDITING IN NEGATIVE... C-to-U substitution editing, and theglutamate receptor mRNA A-to-I editing are perhaps the best... RNAs in ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
30 RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by
 

Summary:  editing may influence many biologically important processes, and that for many metazoa, A-to-I conversion... DNA clones, or directly se- quenced reverse transcription­PCR products. (A-to-I conversion at the RNA level... RNA hairpins in noncoding regions of human brain and Caenorhabditis ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
31 An adenosine-to-inosine tRNA-editing enzyme that can perform C-to-U deamination of DNA
 

Summary:  to a reduc- tion in both C-to-U and A-to-I editing of tRNA in vivo. Surprisingly, in vitro, this enzyme can... mediate A-to-I editing of tRNA and C-to-U deamination of ssDNA but not both in either substrate... approaches, we demonstrate that one of the components of ...

  

Source: Papavasiliou, F. Nina - Laboratory of Lymphocyte Biology, Rockefeller University

 

Collection: Biology and Medicine

 
32 Mammalian microRNAs: experimental evaluation of novel and previously
 

Summary:  RNA molecule is rare, or multiply edited RNAs are degraded more rapidly. A-to-I editing of a seed... of either the miRNA or the miRNA*. A-to-I editing could also affect miRNA loading, and thereby ...

  

Source: Bartel, David - Whitehead Institute for Biomedical Research & Department of Biology, Massachusetts Institute of Technology (MIT)

 

Collection: Biotechnology ; Biology and Medicine

 
33 Molecular Cell, Vol. 10, 809817, October, 2002, Copyright 2002 by Cell Press The Role of RNA Editing by ADARs in RNAi
 

Summary:  of promiscuosly A-to-I edited RNAs. Cell 106, 465­475. Morse, D.P., Aruscavage, P.J., and Bass, B.L. (2002). RNA... potentially antagonize RNAi by several mechanisms. For example, editing could prevent the dsRNA from being... by Dicer andRNA-editing enzymes that ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
34 ADAR Proteins: Double-stranded RNA and Z-DNA Binding Domains
 

Summary:  , Rich A, Maas S (2004) Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome... ........................................................................................................ 2 2 ADAR Family Members and Their Domain Organization ............................ 2 3 RNA ...

  

Source: Ecole Polytechnique, Centre de mathématiques

 

Collection: Mathematics

 
35 Very Few RNA and DNA Sequence Differences in the Human Transcriptome
 

Summary:  editing protein. Science 260: 1816­1819. 9. Maas S, Kawahara Y, Tamburro KM, Nishikura K (2006) A-to-I RNA... , Indiana, United States of America Abstract RNA editing is an important cellular process by which... at a relatively small number of loci. The rarity of RNA ...

  

Source: Hahn, Matthew - School of Informatics & Department of Biology, Indiana University

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine

 
36 Evidence for auto-inhibition by the N terminus of hADAR2 and activation by dsRNA binding
 

Summary:  deaminase. J. Biol. Chem. 271: 12221­12226. Maas, S., Rich, A., and Nishikura, K. 2003. A-to-I RNA editing... interactions with both dsRBMs. Keywords: ADAR; deamination; RNA editing; dsRBM; inosine INTRODUCTION RNA... . 3A). A natural substrate of hADAR2 is the R/G ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
37 10.1261/rna.1165008Access the most recent version at doi: 2008 14: 2050-2060; originally published online Aug 21, 2008;RNA
 

Summary:  ., and Maas, S. 2004. Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome. PLo... RNAs with edited 3' UTRs are presentH. sapiensandC. elegans data Supplementary http://rna.cshlp.org/cgi/content/full/rna... , Salt Lake City, Utah 84112, USA ABSTRACT Adenosine ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
38 Proc. Nati. Acad. Sci. USA Vol. 89, pp. 11944-11948, December 1992
 

Summary:  /messenger RNA chimeric molecules in vitro, the initial step of RNA editing, is dependent on an anchor sequence... , 1992 (receivedfor review June 2, 1992) ABSTRACT Syn c pre-edit messenger RNA (mRNA) and guide RNA (gRNA... in ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
39 Evolutionarily conserved human targets of adenosine to inosine RNA editing
 

Summary:  to the phenotypes of ADAR1 knockout mice. INTRODUCTION Site-selective adenosine to inosine (A-to-I) RNA-editing... that A-to-I RNA editing has a pivotal role in nervous system functions (4). Notably, while all four novel... ,A. and Maas,S. (2004) Widespread A-to-I ...

  

Source: Eisenberg, Eli - School of Physics and Astronomy, Tel Aviv University

 

Collection: Materials Science ; Physics

 
40 In vitro uridine insertion RNA editing mediated by cis-acting guide RNAs
 

Summary:  In vitro uridine insertion RNA editing mediated by cis-acting guide RNAs STEPHEN T. KAPUSHOC1... 1, presumably by maintaining the mRNA 59 cleavage fragment within the editing complex. We speculate... may be rate limiting in vitro. Keywords: guide RNA; Leishmania; RNA ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine


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41 www.landesbioscience.com RNA Biology 1 RNA Biology 7:2, 1-10; March/April 2010; 2010 Landes Bioscience
 

Summary:  of LCMV infec- tion demonstrated high rates of ADAR1-specific A-to-I muta- tions, leading to dysfunctional... . Their targets include the genomes and transcriptomes of both host and pathogen. Host-directed mRNA editing... APOBEC1, an RNA-editing cytidine deaminase. The first mammalian polynucleotide cytidine ...

  

Source: Papavasiliou, F. Nina - Laboratory of Lymphocyte Biology, Rockefeller University

 

Collection: Biology and Medicine

 
42 Underediting of glutamate receptor GluR-B mRNA in malignant gliomas
 

Summary:  the cellular machinery for A-to-I RNA editing might be directly or indirectly involved in the progression... of ADAR2 pre-mRNA and resulting splice products. A-to-I editing at the 1 position by ADAR2 leads... con- sequences for protein function. The best-studied ...

  

Source: Mullen, Sean P. - Department of Biological Sciences, Lehigh University

 

Collection: Biology and Medicine

 
43 RNA-binding proteins and post-transcriptional gene regulation Tina Glisovic1
 

Summary:  . and Nishikura, K. (2005) ADAR gene family and A- to-I RNA editing: diverse roles in posttranscriptional gene... ] Palladino, M.J., Keegan, L.P., OÕConnell, M.A. and Reenan, R.A. (2000) A-to-I pre-mRNA editing in Drosophila... . The ...

  

Source: Dreyfuss, Gideon - Department of Biochemistry and Biophysics, University of Pennsylvania

 

Collection: Biology and Medicine

 
44 ARTICLE doi:10.1038/nature09715 The developmental transcriptome of
 

Summary:  in 55 Drosophila genes that undergo A-to-I RNA editing41 . This post-transcriptional modifica- tion... nucleotide positions consistent with A-to-I editing and defined 972 edited positions within transcripts... , exons and RNA ...

  

Source: Brenner, Steven E. - Department of Plant and Microbial Biology, University of California at Berkeley; Higgins, Darren - Department of Microbiology and Molecular Genetics, Harvard University

 

Collection: Biology and Medicine ; Biotechnology

 
45 Reprint Scries ^r*171Vrr*17 26 October 1990, Volume 250, pp. 512-513 k_7VylJ!iilV/JL
 

Summary:  of Science #12;^pective RNA Editing--A Novel Genetic Phenomenon.^ LARRY SIMPSON THE THEORY THAT GENETIC... no effea on the information flow paradigm. The discovery of RNA editing in the mitochondria of kinetoplas... of mRNA's. There appeared to be no nucleic acid templates that encoded ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
46 DOI: 10.1126/science.1170995 , 1210 (2009);324Science
 

Summary:  Yuan Gao,2,4 George M. Church1 § Adenosine-to-inosine (A-to-I) RNA editing leads to transcriptome... to studies involving RNA editing­related human diseases. A denosine-to-inosine (A-to-I) RNA editing converts... ...

  

Source: Church, George M. - Wyss Institute for Biologically Inspired Engineering & Department of Genetics, Harvard University

 

Collection: Biotechnology

 
47 Duplex RNA-Binding Enzymes: Headliners from Neurobiology, Virology, and Development
 

Summary:  of A-to-I RNA editing have also been identified.[20] Consistent with the observation that the editing... targets include messages for neurotransmitter receptors, A-to-I RNA editing is necessary for a properly... responsible for ...

  

Source: Beal, Peter A. - Department of Chemistry, University of Utah

 

Collection: Chemistry

 
48 An Evolutionary Model of Genotype Editing Luis M. Rocha1, Ana Maguitman1, Chien-feng Huang2, Jasleen Kaur1, and Sheetal Narayanan1
 

Summary:  . (2003). A-to-I RNA editing: Recent news and residual mysteries. Journal of Biological Chemistry, 278... of higher eukary- otes such as mammals (with A-to-I substitution) (for reviews see (Blanc and Davidson, 2003... -coding genetic components are al- lowed to co-evolve. Our goal is twofold: (1) to study the ...

  

Source: Rocha, Luis - School of Informatics, Indiana University

 

Collection: Computer Technologies and Information Sciences

 
49 In search of antisense Giovanni Lavorgna1
 

Summary:  reten- tion of promiscuously A-to-I edited RNAs. Cell 106, 465­475 24 Scadden, A.D. and Smith, C... , X-inactivation and RNA editing. Moreover, there is growing evidence to suggest that antisense... of antisense partners, can affect gene expression via RNA editing or ...

  

Source: Sorek, Rotem - Department of Molecular Genetics, Weizmann Institute of Science

 

Collection: Biology and Medicine

 
50 BioMed Central Page 1 of 7
 

Summary:  of Neurochemistry 1996, 66:1-5. 7. Palladino MJ, Keegan LP, O'Connell MA, Reenan RA: A-to-I pre- mRNA editing... editing enzymes that target double stranded RNA and convert adenosine to inosine, which is read... by ADARs. However, ADAR-editing of viral ...

  

Source: Jiggins, Francis - Department of Genetics, University of Cambridge

 

Collection: Environmental Sciences and Ecology

 
51 Cell, Vol. 123, 181193, October 21, 2005, Copyright 2005 by Elsevier Inc. A Nuclear RNA Is
 

Summary:  for RNA-editing enzymes known as adenosine deaminases that act on RNA (ADARs), which convert adenosine... that these sequences are base paired in vivo. In con- trast, editing is not observed in the mCAT2 mRNA "for- ward... , there is a precedent for nuclear retention through RNA ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
52 THEHIDDENGENETIC COPYRIGHT 2004 SCIENTIFIC AMERICAN, INC.
 

Summary:  that A-to-I editing of RNA transcripts is two orders of magnitude more widespread in hu- mans than... in noncoding RNA sequences. A-to-I editing is particularly active in the brain, and aberrant editing has been... of Compugen and col- leagues ...

  

Source: Yoon, Byung-Jun - Department of Electrical and Computer Engineering, Texas A&M University

 

Collection: Engineering ; Biotechnology

 
53 Role of RNA Structure in RNA Editing Gregory J. Conneli^'^ and Larry Simpson^'^
 

Summary:  m Role of RNA Structure in RNA Editing Gregory J. Conneli^'^ and Larry Simpson^'^ iHoward Hughes... , we focus on the role of RNA structure in three types of editing reactions that are known to alter... - tion of RNA structure to these various types of ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
54 Cell, Vol. 60, 169-196, January 26, 1990, Copyright 0 1990 by Cell Press A Model for RNA Editing in Kinetoplastid
 

Summary:  Cell, Vol. 60, 169-196, January 26, 1990, Copyright 0 1990 by Cell Press A Model for RNA Editing... in Kinetoplastid Mitochondria: "Guide" RNA Molecules Transcribed from Maxicircle DNA Provide the Edited Information... involved in RNA editing is present in the ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
55 Complex management: RNA editing in trypanosomes
 

Summary:  Complex management: RNA editing in trypanosomes Kenneth D. Stuart1,2 , Achim Schnaufer1 , Nancy... to be elucidated. Introduction Most trypanosomatid mitochondrial mRNAs undergo RNA editing by which precursor mRNA... -protein complexes that are involved in RNA ...

  

Source: Schnaufer, Achim - Institute of Immunology and Infection Research, University of Edinburgh

 

Collection: Biology and Medicine

 
56 RNAi mechanisms in Caenorhabditis elegans Alla Grishok*
 

Summary:  , Z., Blackwell, K. and Carmichael, G.G. (2005) Vigilins bind to promiscuously A-to-I-edited RNAs... ; accepted 1 August 2005 Available online 9 August 2005 Edited by Shou-Wei Ding Abstract RNA interference... . A recent re- port indicates that the RISC subunit Tudor-SN interacts with hyper-edited ...

  

Source: Grishok, Alla - Department of Biochemistry and Molecular Biophysics, Columbia University

 

Collection: Biology and Medicine

 
57 BioMed Central Page 1 of 9
 

Summary:  for RNA secondary structure prediction: A practical guide. RNA Biochemistry and Biotechnology Edited by... Database RAG: RNA-As-Graphs web resource Daniela Fera1,2, Namhee Kim1, Nahum Shiffeldrim1, Julie Zorn1, Uri... @nyu.edu * Corresponding author Abstract Background: The proliferation of structural and ...

  

Source: Schlick, Tamar - Department of Chemistry, New York University

 

Collection: Chemistry

 
58 What is RNA? Using graphs to represent RNA
 

Summary:  is RNA? Using graphs to represent RNA Poly-time algorithms using graphs NP-completness proof EDIT... to represent RNA Poly-time algorithms using graphs NP-completness proof EDIT(NESTED,NESTED): ­ Computing edit... What is RNA? Using graphs to ...

  

Source: Blin, Guillaume - Institut d'électronique et d'informatique Gaspard-Monge, Universite de Marne-la-Vallee

 

Collection: Computer Technologies and Information Sciences

 
59 A glimpse of Non Coding RNA Introduction
 

Summary:  regulation ... rRNA Ribosomal RNA tRNA Transfer RNA snoRNA nucleosome, rRNA-editing miRNA Control of gene... A glimpse of Non Coding RNA #12;Introduction Central dogma : But which came first ?? #12;The ...

  

Source: Goldschmidt, Christina - Department of Statistics, University of Warwick

 

Collection: Mathematics

 
60 The EMBO Journal vol.15 no.23 pp.6758-6765, 1996 Guide RNA-directed uridine insertion RNA editing
 

Summary:  The EMBO Journal vol.15 no.23 pp.6758-6765, 1996 Guide RNA-directed uridine insertion RNA editing... . We have demonstrated gRNA-dependent U insertions into a specific editing site of a pre-edited mRNA... and downstream ofthe ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine


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61 Bass CV, page 1 Curriculum Vitae
 

Summary:  on RNA Editing, Co-Chair 2001-2004 NIH Cell Development and Function 2 Study Section, Member 2001 Gordon... Research Conference on RNA Editing, Co-vice Chair 2000 Damon Runyon Walter Winchell Postdoctoral... of RNA-mediated regulation (Mosbach, Germany) 2011 Gordon Research Conference on ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
62 Expanding the genetic code Only 20 amino acids are used in the biosynthesis of proteins
 

Summary:  RNAile ­ there is an editing mechanism Nonnatural amino acids may be introduced into proteins by engineering novel aaRS/tRNA... ;Hendrickson et al, ARB 73, 147 (2004) #12;Biosynthetic incorporation of nonnatural amino acids tRNA converts... genetic information in the form of RNA sequence into the amino acid ...

  

Source: Park, Sheldon - Department of Chemical and Biological Engineering, State University of New York at Buffalo

 

Collection: Biology and Medicine ; Biotechnology

 
63 Cell, Vol. 70, 469-476, August 7, 1992, Copyright 0 1992 by Cell Press Generation of Unexpected Editing Patterns
 

Summary:  , California 90024 Summary We have analyzed the generation of unexpected pat- terns of RNA editing, i.e., those... that misediting within junction regionscan be corrected by appropriately acting gRNAs. Introduction RNA editing... , 1991) models-have been proposed for gRNA- mediated ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
64 EMBO reports VOL 7 | NO 12 | 2006 2006 EUROPEAN MOLECULAR BIOLOGY ORGANIZATION conceptconcept
 

Summary:  retention of promiscuously A-to-I edited RNAs. Cell 106: 465­475 Michal Lapidot Yitzhak Pilpel #12;... RNA polII RNAi RNA editing Nuclear retention Degradation Translation inhibition Recruitment... with the repressed variant. (C) Double-stranded RNA-dependent ...

  

Source: Pilpel, Yitzhak - Department of Molecular Genetics, Weizmann Institute of Science

 

Collection: Biology and Medicine

 
65 Bass CV, page 1 Curriculum Vitae
 

Summary:  office) 2003 Gordon Research Conference on RNA Editing, Co-Chair 2001-2004 NIH Cell Development... and Function 2 Study Section, Member 2001 Gordon Research Conference on RNA Editing, Co-vice Chair 2000 Damon... chair) 2009 Gordon Research Conference on RNA Editing ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
66 Intronic Alus Influence Alternative Splicing Galit Lev-Maor1.
 

Summary:  as a substrate for A-to-I RNA editing that stabilizes the binding of the p54 protein to the mRNA. This causes... extensive RNA editing (A-to-I), to higher levels than any other tested organism. RNA editing ...

  

Source: Ast, Gil - Department of Molecular Genetics and Biochemistry, Tel Aviv University

 

Collection: Biology and Medicine

 
67 RNAStrAT: RNA Structure Analysis Toolkit This poster presents RNAStrAT, a freely available web server that proposes
 

Summary:  . (2005) An edit distance between RNA stem-loops. LNCS 3772, pp. 334-45). 3. Finally, an alignment... RNAStrAT: RNA Structure Analysis Toolkit This poster presents RNAStrAT, a freely available web... server that proposes several tools for the comparison of RNA secondary structures. The website in

  

Source: Chauve, Cedric - Department of Mathematics, Simon Fraser University

 

Collection: Mathematics

 
68 C H A P T E R F I F T E E N Large-Scale Overexpression and
 

Summary:  ., Rich, A., and Nishikura, K. (2003). A-to-I RNA editing: Recent news and residual mysteries. J. Biol... ., and Reenan, R. A. (2000a). A-to-I pre- mRNA editing in Drosophila is primarily involved in adult nervous... , K. (2005). ADAR gene family and ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
69 11 mRNA editing LARRY SIMPSON and OTAVIO H. THIEMANN
 

Summary:  I5h 11 mRNA editing LARRY SIMPSON and OTAVIO H. THIEMANN 1. Introduction RNA editing is a term... -10), RNA edit- ing' came to be defined in a broad sense as any process that results in the produc- tion... be involved in the mechanism of RNA ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
70 Guide RNA-independent and Guide RNA-dependent Uridine Insertion into Cytochrome b mRNA in a Mitochondrial Lysate
 

Summary:  occurring in vitro in synthetic pre- edited cytochrome b mRNA during incubation with a Leishmania tarentolae... editing sites: one that is dependent on the secondary structure of the mRNA but is inde- pendent of both... - tary to mRNA immediately 3 of the editing ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
71 NIKOLAS H. CHMIEL, DONALD C. RIO and JENNIFER A. DOUDNA P-element somatic inhibitor proteinDrosophila
 

Summary:  ., and Carmichael, G.G. 2005. Vigilins bind to promiscuously A-to-I-edited RNAs and are involved in the formation... of functions including hetero- chromatin formation as well as RNA editing, contains 15 KH-domain repeats... available online through the RNA Immediate Open Access option. service Email alerting ...

  

Source: Doudna, Jennifer A. - Department of Molecular and Cell Biology, University of California at Berkeley

 

Collection: Biology and Medicine

 
72 Cell, Vol. 61, 879-884, June 1, 1990, Copyright 0 1990 by Cell Press Kinetoplast DNA Minicircles Encode Guide RNAs for
 

Summary:  Encode Guide RNAs for Editing of Cytochrome Oxidase Subunit Ill mRNA Nancy ft. Sturm' and Larry Simpson... Summary Guide RNAs (gRNAs) for the editing of sites l-8 of COIlI mRNA and an "unexpected" partially edited... a perfect mRNA-gRNA match (allowing for G-U base ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
73 A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede
 

Summary:  A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus... -paired acceptor stem is required for proper tRNA functioning, RNA editing in the products of these genes... in the acceptor or anticodon stems. RNA ...

  

Source: Lavrov, Dennis V. - Department of Ecology, Evolution, and Organismal Biology, Iowa State University

 

Collection: Environmental Sciences and Ecology

 
74 RNA in few words Preliminaries Idea of the proof Conclusion Extending the hardness of RNA secondary
 

Summary:  of RNA secondary comparison #12;RNA in few words Preliminaries Idea of the proof Conclusion Edit... secondary comparison #12;RNA in few words Preliminaries Idea of the proof Conclusion Edit operations A. A... RNA in few words Preliminaries Idea of the proof Conclusion ...

  

Source: Blin, Guillaume - Institut d'électronique et d'informatique Gaspard-Monge, Universite de Marne-la-Vallee

 

Collection: Computer Technologies and Information Sciences

 
75 1997 Oxford University Press 37513759Nucleic Acids Research, 1997, Vol. 25, No. 19 The mechanism of U insertion/deletion RNA editing in
 

Summary:  of U insertion/deletion RNA editing in kinetoplastid mitochondria Juan D. Alfonzo, Otavio Thiemann... /deletion RNA editing in kinetoplastid mito- chondria. Models involving the transfer of uridines (Us) from the 3... -end of gRNA to the editing site appear to be ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
76 Gene 240 (1999) 247260 www.elsevier.com/locate/gene
 

Summary:  Gene 240 (1999) 247­260 www.elsevier.com/locate/gene Review Uridine insertion/deletion RNA editing... The uridine insertion/deletion RNA editing in trypanosome mitochondria is a unique posttranscriptional RNA... of several in-vitro editing assays has provided much ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
77 RNA Metabolism Some RNAs have catalytic activity. See Chapter
 

Summary:  Edition Influenza virus is an RNA virus but it does not incorporate its genome into the host genome... Chapter 21 RNA Metabolism Some RNAs have catalytic activity. See Chapter 22. RNA viruses have RNA... . The major role of RNA is to transfer the information stored in ...

  

Source: O'Neil, Joe - Department of Chemistry, University of Manitoba

 

Collection: Biology and Medicine ; Chemistry

 
78 de Lille, UMR CNRS 8527, 1 rue du Prof. Calmette 59000 Lille, France. Internet
 

Summary:  Auriault Institut Pasteur-Institut de Biologie de Lille Lille, France Single-Nucleotide Resolution of RNA... Strands in the Presence of their RNA Complements BioTechniques 27:450-456 (September 1999) Double... -stranded (ds)RNA is impor- tant for a variety of biological systems. The discovery of the ...

  

Source: Bevilacqua, Philip C.- Department of Chemistry, Pennsylvania State University

 

Collection: Chemistry

 
79 Bass CV, page 1 Curriculum Vitae
 

Summary:  Research Conference on RNA Editing, Co-Chair 2001-2004 NIH Cell Development and Function 2 Study Section... , Member 2001 Gordon Research Conference on RNA Editing, Co-vice Chair 2000 Damon Runyon Walter Winchell... , T., and Bass, B.L. 2007. miRNA editing--we should ...

  

Source: Bass, Brenda L. - Departments of Biochemistry & Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
80 Published online 15 January 2002 Composition of the editing complex
 

Summary:  , Im Neuenheimer Feld 282, D-69120 Heidelberg, Germany The RNA editing that produces most functional m... , uridylate addition and removal, and RNA ligation steps of the editing process. Enzymatic and in vitro... , together with the interaction between gRNA and the ...

  

Source: Schnaufer, Achim - Institute of Immunology and Infection Research, University of Edinburgh

 

Collection: Biology and Medicine


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81 MOLECULAR AND CELLULAR BIOLOGY, Aug. 1996, p. 45844589 Vol. 16, No. 8 0270-7306/96/$04.00 0
 

Summary:  1996/Accepted 8 May 1996 An RNA editing-like internal uridine (U) incorporation activity (G. C. Frech... of guide RNAs. The mechanism of the uridine (U) addition-deletion type of RNA editing that occurs... for editing is provided by guide RNAs (gRNAs), which are complementary to mature ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
82 Nucleic Acids Research doi:10.1093/nar/gkn295
 

Summary:  and A-to-I RNA editing: diverse roles in posttranscriptional gene regulation. Prog. Nucleic Acid Res... ,A., Rich,A. and Maas,S. (2004) Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcrip... ,R., Rechavi,G. and Levanon,E.Y. (2005) Is abundant ...

  

Source: Ecole Polytechnique, Centre de mathématiques

 

Collection: Mathematics

 
83 2007 The Authors Journal compilation 2007 The Royal Entomological Society 691
 

Summary:  described nAChR genes. A-to-I RNA editing was found at 13 sites in Md5, eleven of which resulted in amino... acid substitutions. No evidence for A-to-I RNA editing was found in Md3. Md5 expression, quantified... identified (Table 1), and at least 13 (in aabys) and 12 ...

  

Source: Scott, Jeffrey G. - Department of Entomology, Cornell University

 

Collection: Environmental Sciences and Ecology

 
84 CLASS 4.1: 04/12/07 CATALYTIC RNA
 

Summary:  ;9 B. RNA Editing: - Most cells of an organism - One exception is - DNA of those genes - Are also rare... - find nucleotide change - RNA contians - changes CAA codon - some RNA editing event of apo-B mRNA... changed - Find other cases = #12;10 b. Mechanism leading to ...

  

Source: Andres, Andrew - School of Life Sciences, University of Nevada at Las Vegas

 

Collection: Biology and Medicine

 
85 1 Concha, M.L. and Adams, R.J. (1998) Oriented cell divisions and cellular morphogenesis in the zebrafish gastrula and neurula: a time-
 

Summary:  .1016/j.tig.2004.12.004 Is abundant A-to-I RNA editing primate-specific? Eli Eisenberg1,2 , Sergey Nemzer1... -stranded RNA substrates. Introduction A-to-I RNA editing is the site-specific modification of adenosine... . Recently, ...

  

Source: Morris, Quaid - Department of Electrical and Computer Engineering, University of Toronto

 

Collection: Computer Technologies and Information Sciences

 
86 Cell, Vol. 101, 2533, March 31, 2000, Copyright 2000 by Cell Press RNAi: Double-Stranded RNA Directs the
 

Summary:  evident for the Rr-luc mRNA: approximately 90% of the RNA remained intact after ational editing of mRNA... of transfer New England Biolabs. RNA. J. Mol. Biol. 262, 437­458. Bass, B.L. (1997). RNA editing... Cell, Vol. 101, 25­33, March 31, 2000, ...

  

Source: Bartel, David - Whitehead Institute for Biomedical Research & Department of Biology, Massachusetts Institute of Technology (MIT)

 

Collection: Biotechnology ; Biology and Medicine

 
87 Cell, Vol. 61, 871-878, June 1, 1990, Copyright 0 1990 by Cell Press Partially Edited mRNAs for Cytochrome b and
 

Summary:  RNAs for Cytochrome b and Subunit III of Cytochrome Oxidase from Leishmania tarentolae Mitochondria: RNA Editing... , as predicted by the guide RNA model of RNA editing. In the case of cytochtome oxidase subunit Ill (COIII), 177... of these RNAs are produced by normal 3' to 5' ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
88 Cell, Vol. 81,837-840, June 16, 1995,Copyright 1995by Cell Press Sense from Nonsense: RNA Editing
 

Summary:  Cell, Vol. 81,837-840, June 16, 1995,Copyright© 1995by Cell Press Sense from Nonsense: RNA Editing... that is to be edited (Figure 1). The observed overall 3' to 5' polarity of editing within a multiple gRNA- mediated... to encode the same editing information, but ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
89 Capped small RNAs and MOV10 in human hepatitis delta virus replication
 

Summary:  hepatitis delta virus (HDV) replication by RNA-directed transcription is unclear. Here we identify two... to the 5¢ end of hepatitis delta antigen (HDAg) mRNA, and interacted with HDAg and RNA polymerase II (Pol... II), whereas the other mapped to a structurally analogous region on the genomic RNA hairpin. ...

  

Source: Kay, Mark A. - Department of Genetics, Stanford University

 

Collection: Biology and Medicine

 
90 mRNA and cytoskeletal filaments Gary Bassell and Robert H Singer*
 

Summary:  -C. Bassell G. Taneia KL. RH: mechsnism mRNA loc&ation: its effeh cell polarity. In: Localized RNA. Edited... 109 mRNA and cytoskeletal filaments Gary Bassell and Robert H Singer* The localization of some m... RNAs to distinct intracellular regions is achieved through interactions of the ...

  

Source: Singer, Robert H. - Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Yeshiva University

 

Collection: Biology and Medicine

 
91 Cell, Vol. 62, 391-397, July 27, 1990, Copyright 0 1990 by Cell Press Guide RNAs in Kinetoplastid Mitochondria Have
 

Summary:  , and allowed the identification of potential mRNA recog nition sites for an editing complex. in addition, iso... coding regions, in a process known as RNA editing (Simpson and Shaw, 1989; Benne, 1989; Stuart, 1989... is to specify the precise sequence information by forming an ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
92 Uridine insertion/deletion RNA editing in trypanosome mitochondria: A complex business
 

Summary:  REVIEW Uridine insertion/deletion RNA editing in trypanosome mitochondria: A complex business LARRY... ABSTRACT The basic mechanism of uridine insertion/deletion RNA editing in mitochondria of kinetoplastid... in the uridine insertion/deletion RNA editing reaction and ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
93 Ruslan Aphasizhev (ed.), RNA and DNA Editing: Methods and Protocols, Methods in Molecular Biology, vol. 718, DOI 10.1007/978-1-61779-018-8_6, Springer Science+Business Media, LLC 2011
 

Summary:  103 Ruslan Aphasizhev (ed.), RNA and DNA Editing: Methods and Protocols, Methods in Molecular... Identifying mRNA Editing Deaminase Targets by RNA-Seq Brad R. Rosenberg, Scott Dewell, and F. Nina... Papavasiliou Abstract RNA editing deaminases act ...

  

Source: Papavasiliou, F. Nina - Laboratory of Lymphocyte Biology, Rockefeller University

 

Collection: Biology and Medicine

 
94 RNA in few words Preliminaries Maximum Arc-Preserving Common Subsequence problem Idea of the proof Conclusion Comparing RNA structures: towards an
 

Summary:  Conclusion Comparing RNA structures: towards an intermediate model between the EDIT and the LAPCS problems G... - gblin@univ-mlv.fr Towards an intermediate model between EDIT and LAPCS #12;RNA in few words... . Blin - gblin@univ-mlv.fr Towards an intermediate model between EDIT and LAPCS ...

  

Source: Blin, Guillaume - Institut d'électronique et d'informatique Gaspard-Monge, Universite de Marne-la-Vallee

 

Collection: Computer Technologies and Information Sciences

 
95 irst discovered in plants, where it was known as post-transcriptionalgenesilencing,RNAsilencing
 

Summary:  as a substrate from which Dicer can produce siRNAs, but it also competes with the `RNA-editing' process catalysed... by dsRNA-specific adenosine deaminases (ADARs), which convert adenosine to inosine. This editing... . Nature 426, 874­878 (2003). 71.Knight, S. W. & Bass, B. L. The role of RNA ...

  

Source: Badyaev, Alex - Department of Ecology and Evolutionary Biology, University of Arizona

 

Collection: Environmental Sciences and Ecology

 
96 Separating News from Noise Cells attempting to interpret environmental signals face
 

Summary:  targets of A-to-I editing. Loss of ADAR function is lethal for many organisms but results in relatively... of the sequencing data confirmed that transcripts subject to A-to-I editing largely tend to be associated... by the in vitro transcription of two small `genelets,' each of which produces an ...

  

Source: Winfree, Erik - Computer Science Department, California Institute of Technology

 

Collection: Computer Technologies and Information Sciences ; Biology and Medicine

 
97 LARRY SIMPSON Howard Hughes Medical Institute and Departments
 

Summary:  Angeles, California 90095, USA RNA Editing RNA editing is a term used to describe a diverse set... of RNA editing vary from uridine (U) or cytidine (C) insertions and deletions within coding regions... ................................................ The Discovery of ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
98 Ancient origin of RNA editing in kinetoplastid protozoa Larry Simpson and Dmitri A Maslov
 

Summary:  Ancient origin of RNA editing in kinetoplastid protozoa Larry Simpson and Dmitri A Maslov Howartd... in the cytochrome oxidase (CO) subunit II (COII) niRNA in Crithidia, editing was soon found to also include dele... to be the consequence of the formation of upstream anchor sequences by ...

  

Source: Simpson, Larry - Department of Microbiology, Immunology and Molecular Genetics, University of California at Los Angeles

 

Collection: Biology and Medicine

 
99 Supplementary Text Annotations status at the beginning of modENCODE
 

Summary:  the presence of known snoRNA motifs. RNA Editing Short poly(A)+ RNA-Seq reads which mapped to annotated... and moderately sized transcripts. FB5.12 contains 1,081 annotated ncRNA genes. Of these, 927 are named genes... ncRNAs. From the total RNA-Seq data we detected ...

  

Source: Brenner, Steven E. - Department of Plant and Microbial Biology, University of California at Berkeley; Perrimon, Norbert - Department of Genetics, Harvard University

 

Collection: Biology and Medicine ; Biotechnology

 
100 RBP16 is a multifunctional gene regulatory protein involved in editing and stabilization of specific
 

Summary:  interference (RNAi). Poisoned primer extension analyses revealed that edited, but not unedited, CYb mRNA... editing. The down-regulation of CYb editing in RBP16 RNAi transfectants apparently entails a defect in gRNA... : RNA editing; ...

  

Source: Hing, Huey - Department of Biology, State University of New York at Brockport

 

Collection: Biology and Medicine


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