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Sample search results for: aa genome oryza

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1 76 DARWIN'S HERITAGE TODAY Dynamic Genome Evolution of Oryza
 

Summary:  germplasm. The genus Oryza consists of more than 20 species and 10 genome types, including six diploids (AA... W, et al. Comparative phys- ical mapping between Oryza sativa (AA genome type) and O. punctata (BB... 76 DARWIN'S HERITAGE TODAY Dynamic ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
2 Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the
 

Summary:  , wild species in the genus Oryza include several AA genome types that are closely related to cultivated... , contractions and inversions in the Oryza species genomes relative to O. sativa by combining data from paired... research in genome evolution, speciation, ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
3 Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza
 

Summary:  species belonging to the genome types AA, FF and GG respectively. Genome evolution in polyploid Oryza 433... (percentageofunshared genes due to independent lineage-specific gain or loss) observed among the AA genomes of Oryza... Spatio-temporal ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
4 15.1 Introduction............................................................................................395 15.2 Development of the OMAP BAC Library Resource .............................397
 

Summary:  (SNP) maps of all the AA genome species, investigate the transposon dynamics in Oryza and their effect... ........................................................................399 15.3.3 Analysis of Structural Variation Between O. sativa and the 3 AA Genome OMAP Accessions... , ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
5 Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication
 

Summary:  Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication Li... used as a model to study fungal evolution. Here we report the genome sequence of R. oryzae strain 99... Lineage Fungus Rhizopus oryzae Reveals a Whole- ...

  

Source: Charles University in Prague, Department of Botany, Phycology Research Group; Normark, Benjamin B. - Department of Plant, Soil and Insect Sciences, University of Massachusetts at Amherst

 

Collection: Biology and Medicine

 
6 Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size
 

Summary:  the presence of strong hybridization signals in Oryza lineages belonging to the AA, BB and CC genomes... of genome size in the genus Oryza Jetty S. S. Ammiraju1, , Andrea Zuccolo1, , Yeisoo Yu1 , Xiang Song1... to detect ancestrally related retrotransposons. The genus ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
7 The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12
 

Summary:  , and molecular divergence studies have classified the species of Oryza into 10 genome types, namely, AA, BB, CC... -coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza Jetty S.S. Ammiraju,1... the 10 genome types of ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
8 RESEARCH ARTICLE Open Access Exceptional lability of a genomic complex in rice
 

Summary:  orthologous regions from AA-, BB-, EE-, and FF-genome Oryza spe- cies by searching the O. sativa Orp region... regions of the three Oryza AA genomes show a high level of polymorphisms of LTR-retrotransposon insertions... accession and all Asian ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
9 Dynamic Evolution of Oryza Genomes Is Revealed by Comparative Genomic Analysis of a Genus-Wide Vertical
 

Summary:  ) comparisons among three AA genome lineages of Genome Evolution in Oryza 3 of 19 #12;Figure 1. Comparative... in the remaining AA genome species and the nine other Oryza genome types relative to the O. sativa Refseq... that ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
10 The Oryza Map Alignment Project: the golden path to unlocking the genetic potential of wild rice species
 

Summary:  , comparative genomics, physical mapping, rice, wild species Abstract The wild species of the genus Oryza offer... wild rice species comprise nine different genome types and include six diploid genomes (AA, BB, CC, EE... genomics between the cereal ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
11 10.1101/gr.5290206Access the most recent version at doi: 2006 16: 1262-1269; originally published online Sep 8, 2006;Genome Res.
 

Summary:  genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza... for O. glaber- rima (diploid, genome type AA) to 1283 Mbp for O. coarctata (tetraploid, genomes HHKK... ) (Ammiraju et al. 2006). It is 390 Mbp for the model ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
12 Dynamic Oryza Genomes: Repetitive DNA Sequences as Genome Modeling Agents
 

Summary:  Dynamic Oryza Genomes: Repetitive DNA Sequences as Genome Modeling Agents Navdeep Gill & Phillip... organization in the genus Oryza, will aid in the assembly, annotation and analysis of genomic data, as part... . Transposable elements . LTR-retrotransposons . ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
13 Elusive Origins of the Extra Genes in Aspergillus oryzae Nora Khaldi, Kenneth H. Wolfe*
 

Summary:  Institute of Genetics, Trinity College, Dublin, Ireland Abstract The genome sequence of Aspergillus oryzae... transfer (HGT) from Sordariomycete species, and these genes are closer together in the A. oryzae genome... applications as a producer of hydrolytic enzymes in solid-state fermentations [1,2]. When ...

  

Source: Wolfe, Kenneth H. - Genetics Department, Trinity College, University of Dublin

 

Collection: Biotechnology ; Environmental Sciences and Ecology

 
14 Genome Biology 2008, 9:R45 Open Access2008Kimet al.Volume 9, Issue 2, Article R45Method
 

Summary:  representing the ten genome types of Oryza arepresented

Abstract We describe the establishment and analysis... -sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference... - tivated rice [21,29]. Therefore, comparative ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
15 Paleogenomic Analysis of the Short Arm of Chromosome 3 Reveals the History of the African and Asian Progenitors
 

Summary:  :443­461. Duan S, Lu B, Li Z, Tong J, Kong J, et al. 2007. Phylogenetic analysis of AA-genome Oryza species... rice belonging to the AA genome type but the time of ra- diation between O. sativa and O. Glaberrima... in orthologous position in Oryza sativa and O. glaberrima. Roulin et al. ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
16 BioMed Central Page 1 of 16
 

Summary:  species. Oryza lineages are summarized by genome type, designated AA through JJ according to morphological... Genomics Institute [35]: OSJNBa (Oryza sativa L. ssp. japonica cv. Nipponbare; AA genome), OA_ABa (Oryza... 100821; ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
17 Distinguishing plant and fungal sequences in ESTs from infected plant tissues
 

Summary:  , arabidopsis (Arabidopsis thaliana; Ara- bidopsis Genome Initiative, 2000) and rice (Oryza sativa; Yu et al... : the Oryza­Magnaporthe genomic database, the Oryza­Neurospora genomic database and the GenBank NR database... e- value (10À 1 ). With 100 cDNA sequences ...

  

Source: Hsiang, Tom - Department of Environmental Biology, University of Guelph

 

Collection: Environmental Sciences and Ecology ; Renewable Energy

 
18 Theor Appl Genet (2003) 107:773782 DOI 10.1007/s00122-003-1273-5
 

Summary:  ; Cheng et al. 2002). Within the genus Oryza, PCR products were found in all AA-genome species, one CC... , providing the basis for examining genome evolution at the DNA sequence level. The genus Oryza consists... was collected from O. sativa L. cv Nipponbare (AA), O. sativa cv IR36 ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
19 August 2005 / Vol. 55 No. 8 BioScience 669 Rice (Oryza sativa L.) is one of the world's most
 

Summary:  ).Asian cultivated rice has the diploid AA genome.Oryza species with different genome types have sig... nivara), and other AA-genome Oryza species. The secondary gene pool (PG-2) comprises other non-AA-genome... Oryza) with the ...

  

Source: Snow, Allison A. - Department of Evolution, Ecology and Organismal Biology, Ohio State University

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology

 
20 Journal of Systematics and Evolution 49 (5): 386395 (2011) doi: 10.1111/j.1759-6831.2011.00145.x Research Article
 

Summary:  diversity in AA and CC genome Oryza species in southern South Asia. Genetic Re- sources and Crop Evolution... Research Article Phylogeny and species delimitation of the C-genome diploid species in Oryza 1,2 Li-Li ZANG... . In this study, we reconstructed the phylogeny of three diploid ...

  

Source: Yang, Ziheng - Department of Genetics, Evolution and Environment, University College London

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine


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21 Comparative genome analysis of monocots and dicots, toward characterization of angiosperm diversity
 

Summary:  ]. Early evidence in Oryza [46­48] also reflects wide- spread [49 ], perhaps genome-wide [50 ], duplication... , Sessions A, Oeller P, Varma H et al.: A draft sequence of the rice genome (Oryza sativa L. ssp japonica... et al.: A draft sequence of the rice genome ...

  

Source: Ray, David - Department of Biochemistry and Molecular Biology, Mississippi State University

 

Collection: Environmental Sciences and Ecology

 
22 Bacterial phytopathogens and genome science Joa~ o C Setubal1
 

Summary:  ES, Park IC, Yoon UH, Hahn JH, Koo BS et al.: The genome sequence of Xanthomonas oryzae pathovar... Bacterial phytopathogens and genome science Joa~ o C Setubal1 , Leandro M Moreira2 and Ana CR da... Silva3 There are now fourteen completed genomes of bacterial phytopathogens, all of which have been

  

Source: Setubal, João Carlos - Department of Computer Science, Virginia Tech

 

Collection: Computer Technologies and Information Sciences

 
23 Genome Analysis The effect of domestication on the fungal proteome
 

Summary:  in the A. oryzae lineage. To test this hypothesis, I identified all 2753 orthologs across the genomes... , 2331­2336 9 Machida, M. et al. (2008) Genomics of Aspergillus oryzae: learning from the history of Koji... and A. oryzae. Med. Mycol. 44 (Suppl), 9­11 14 Rokas, A. et al. (2007) ...

  

Source: Rokas, Antonis - Department of Biological Sciences, Vanderbilt University

 

Collection: Biology and Medicine

 
24 D1022D1027 Nucleic Acids Research, 2008, Vol. 36, Database issue Published online 18 October 2007 doi:10.1093/nar/gkm762
 

Summary:  doi:10.1093/nar/gkm762 Oryza Tag Line, a phenotypic mutant database for the Ge´ noplante rice... , France, 2 CIAT, Biotechnology Unit - AA 6713 - CALI, Colombia, 3 Biogemma, 8, rue des fre` res Lumie` re... ) insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line (OTL) ...

  

Source: Ecole Polytechnique, Centre de mathématiques

 

Collection: Mathematics

 
25 Comparison of the Yeast Proteome to Other Fungal Genomes to Find Core Fungal Genes
 

Summary:  Genome Institute (unpublished) genome.jgi-psf.org/fugu6 Oryza sativa Plant 2001/12/27 371.5 Gb Beijing... in the Saccharomyces Genome Database Gene Conserved segment GenBank NR match and e-value YIR007W 129 aa­171 aa Permease... ) A draft sequence of the rice ...

  

Source: Baillie, David - Department of Molecular Biology and Biochemistry, Simon Fraser University; Hsiang, Tom - Department of Environmental Biology, University of Guelph

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology ; Renewable Energy

 
26 Genomic Variation in Rice: Genesis of Highly Polymorphic Linkage Blocks
 

Summary:  selection. The two sequenced genomes of cultivated Asian rice, Oryza sativa, reveal that at least 6... domesticated lines have been sequenced is Asian rice, Oryza sativa. Genomic sequences from the japonica... barriers helps to maintain their reproductive isolation [19,21]. The AA-genome ...

  

Source: Dean, Matthew D. - Department of Ecology and Evolutionary Biology, University of Arizona; Nachman, Michael - Department of Ecology and Evolutionary Biology, University of Arizona

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology

 
27 Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged
 

Summary:  . Cultivated rice is classified as an AA diploid genome (2n = 24) and has two cultivated species, Oryza sativa... and Oryza glaberimma, and six wild relatives. The wild AA genome relatives of cultivated rice are rich... the rice genome. A ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
28 This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully formatted PDF and full text (HTML) versions will be made available soon.
 

Summary:  trichocarpa, Vitis vinifera and Oryza sativa genomes. Parsimony mapping of the loss of synteny corroborates... (Vitis, Populus and Arabidopsis) and grass (Oryza) genomes. Comparative analyses of sequences for two... between regions of the Amborella genome and the sequenced Arabidopsis, ...

  

Source: dePamphilis, Claude - Department of Biology, Pennsylvania State University

 

Collection: Environmental Sciences and Ecology

 
29 Supplemental Materials SM Figure 1. Genomic Southern blot analysis of MUS81 in rice. Total DNA (10 g each)
 

Summary:  1 Supplemental Materials SM Figure 1. Genomic Southern blot analysis of MUS81 in rice. Total DNA... aa) from Methanopyrus kandleri AV19 (Mk), NP_010674/AAB64828 (632 aa) from S. cerevisiae (Sc), XM... _327743 (645 aa) from Neurospora crassa OR74A (Nc), T41371 (572 aa) from ...

  

Source: Heyer, Wolf-Dietrich - Sections of Microbiology & Molecular and Cellular Biology, University of California, Davis

 

Collection: Biology and Medicine

 
30 MicroRNAs (miRNA) are an extensive class of tiny RNA molecules that are thought to regulate the expression of target genes via complementary base-pair interactions. Although the first miRNAs were discovered in the worm Caenorhabditis elegans, more than 20
 

Summary:  RNA genes in animals, using methods based on comparative genomics and also on characteristic patterns... of the secondary structure of the miRNA precursor sequences. In this study, we present a genome-wide computational... approach, called mirfinder, to detect new miRNA genes in the Arabidopsis genome, taking into account

  

Source: Gent, Universiteit - Department of Plant Systems Biology, Bioinformatics and Evolutionary Genomics Division

 

Collection: Biology and Medicine

 
31 Analysis and prediction of gene splice sites in four Aspergillus genomes Kai Wang, David Wayne Ussery, Sren Brunak *
 

Summary:  downloaded the genomic sequences of A. nidulans EGSC A4, A. oryzae RIB40, and A. niger CBS 513.88 from NCBI... genome, but only 77% of the genes contain introns. A. oryzae genes contain the biggest average exon... . 12, 310. Machida, M. et al., 2005. Genome sequencing and analysis of ...

  

Source: Ussery, David W. - Center for Biological Sequence Analysis, Institute of Biotechnology, Danmarks Tekniske Universitet

 

Collection: Biotechnology

 
32 Identification of Active Transposon dTok, a Member of the hAT Family, in Rice Sunok Moon 1
 

Summary:  Tok in the Oryza genus. White rectangles mark conserved bands in the AA genome. Arrowheads indicate bands specific... to one or a few cultivars in the AA genome. Lines 1­32 are the Oryza species listed in Table 1. Lines 1... are probably active transposons. ...

  

Source: An, Gynheung - Department of Life Science, Pohang University of Science and Technology

 

Collection: Biotechnology ; Biology and Medicine

 
33 Putative fasciclin-like arabinogalactan-proteins (FLA) in wheat (Triticum aestivum) and rice (Oryza sativa): identification
 

Summary:  ) and rice (Oryza sativa): identification and bioinformatic analyses Ahmed Faik Æ Jaouad Abouzouhair Æ Fathey... Sarhan Published online: 17 October 2006 Ó Springer-Verlag 2006 Erratum to: Mol Genet Genomics 276... . It is provided here: This work was supported in part by a Genome Canada and Genome Quebec ...

  

Source: Sarhan, Fathey - Département des Sciences Biologiques, Université du Québec à Montréal

 

Collection: Biology and Medicine

 
34 Copyright 2007 by the Genetics Society of America DOI: 10.1534/genetics.106.068783
 

Summary:  Physical Mapping Between Oryza sativa (AA Genome Type) and O. punctata (BB Genome Type) HyeRan Kim,*,1... for publication February 9, 2007 ABSTRACT A comparative physical map of the AA genome (Oryza sativa) and the BB... of the genus ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
35 Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus
 

Summary:  Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus Natalie D. Fedorova1... University School of Medicine, Washington DC, United States of America Abstract We present the genome... . Comparative genomic analysis of A1163 with the recently sequenced A. fumigatus isolate Af293 has identified

  

Source: Badger, Jonathan - Institute for Genomic Research, Rockville

 

Collection: Biotechnology ; Biology and Medicine

 
36 Theor Appl Genet (2007) 115:237243 DOI 10.1007/s00122-007-0559-4
 

Summary:  , and 2,074 Oryza BACs were used to identify CISPs and evaluate their suitability as pan-taxon genomic... ), and Brassicales (Arabidopsis) and concluded that the Allium genome is more similar to Ara- bidopsis than to Oryza... characterized genomes. The similarities between ...

  

Source: Bailey, Donovan - Department of Biology, New Mexico State University

 

Collection: Environmental Sciences and Ecology

 
37 Rice blast is the most important disease that affects glo-bal rice production. Its importance to food security is
 

Summary:  , and for this reason M. oryzae has been classified a hemibiotroph2,5,6 The M. oryzae genome sequence The availability... of the M. oryzae genome sequence has radically altered the manner in which the biology of rice blast... disease can be explored8 . Several features of the M. ...

  

Source: Talbot, Nicholas - School of Biosciences, University of Exeter

 

Collection: Biology and Medicine

 
38 Evolutionary Genetics of Genome Merger
 

Summary:  in the lineages of Arabidopsis (12) and Oryza (80), respectively, to one another and to independent genome... ­3 Arabidopsis or Oryza genes (too few to detect significant patterns in any one genome) were inferred... in different species. By applying this approach to genome sequences for ...

  

Source: Wendel, Jonathan F. - Department of Ecology, Evolution, and Organismal Biology, Iowa State University

 

Collection: Environmental Sciences and Ecology

 
39 Centromere renewal and replacement in the plant kingdom
 

Summary:  the AA genome, O. rhizomatis contains the CC genome, and O. brachyantha contains the FF genome. The major... - vated rice ( 20,000 per haploid genome). It is possible that CentO-F existed in the Oryza progenitor... that retain no vestige of the familiar -satellites ...

  

Source: 

 

Collection: Biology and Medicine

 
40 Copyright 2007 CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. You are free to share -to copy, distribute and transmit the work, under the following conditions
 

Summary:  relationship between the two species. The recently available whole genome sequences of A. flavus and A. oryzae... is similar to that for A. oryzae (36.7 Mb). Interestingly, the genomes of these two fungi are larger than... -specific genes are extra copies of particular genes specifically existing in the A. ...

  

Source: Rokas, Antonis - Department of Biological Sciences, Vanderbilt University

 

Collection: Biology and Medicine


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41 Genome-wide functional analysis reveals that infection-associated fungal autophagy is
 

Summary:  Autophagy in M. oryzae. Analysis of the M. oryzae genome sequence (3) provided evidence for the presence... of ATG22 (25) were encoded in the M. oryzae genome, precluding analysis of this gene function by a single... . Our analysis of the M. oryzae ...

  

Source: Talbot, Nicholas - School of Biosciences, University of Exeter

 

Collection: Biology and Medicine

 
42 A sterol 14a-demethylase is required for conidiation, virulence and for mediating sensitivity to sterol demethylation inhibitors
 

Summary:  expression Magnaporthe oryzae MoCYP51A MoCYP51B a b s t r a c t The Magnaporthe oryzae genome contains two... from the M. oryzae genome (Dean et al., 2005) by similar- ity to known CYP51 genes (Mellado et al... _04432.6 (Broad Institute) predicted by automated annota- tion of the M. ...

  

Source: Talbot, Nicholas - School of Biosciences, University of Exeter

 

Collection: Biology and Medicine

 
43 PLEASE SCROLL DOWN FOR ARTICLE This article was downloaded by: [The University of Manchester]
 

Summary:  of Aspergillus oryzae. Nature 2005; 438: 1157Á1161. 17 Payne GA, Nierman WC, Wortman JR, et al. Whole genome... the feasibility of using array comparative genomic hybridization (aCGH) to explore intraspecific genetic... variability at the genomic level in two pathogenic molds, Aspergillus fumigatus and ...

  

Source: Cotty, Peter J. - School of Plant Sciences, University of Arizona

 

Collection: Biology and Medicine

 
44 Running title: Phylogenetic profiling in plants Mailing address: Yves Van de Peer
 

Summary:  (Pryer et al., 2002). Apart from Arabidopsis thaliana and Oryza sativa (rice), #12;6 where genome... sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92-100 Griffiths S, Dunford RP... , Zhou Y, Zhang X et al. (2002) A draft sequence of the rice genome ...

  

Source: Gent, Universiteit - Department of Plant Systems Biology, Bioinformatics and Evolutionary Genomics Division

 

Collection: Biology and Medicine

 
45 The Bioverse: An object-oriented genomic database and webserver written in Python Jason McDermott and Ram Samudrala
 

Summary:  to 11 genomes including the Oryza sativa (rice) [2] and Homo sapiens [3] genomes. The current version... to the Oryza sativa genome as well as 10 other eukaryotic and prokaryotic genomes. Our framework is built... ://www.python.org>. [2] Yu J., Hu S., Wang J., Wong ...

  

Source: Samudrala, Ram - Department of Microbiology, University of Washington at Seattle

 

Collection: Biotechnology ; Biology and Medicine

 
46 A benefit of high temperature: increased effectiveness of a rice bacterial blight disease resistance gene
 

Summary:  2 Period 3 a a b ab ba b b c c c A AA B B B B B B A B Fig. 2 The Xanthomonas oryzae pv. oryzae... : aggressiveness, avirulence / effector gene, durability, fluctuating selection, Oryza sativa (rice), oscillating... selection, virulence, Xanthomonas oryzae pv. oryzae ...

  

Source: Garrett, Karen A. - Department of Plant Pathology, Kansas State University

 

Collection: Environmental Sciences and Ecology

 
47 Phylogenetic placement of plant pathogenic Sclerotium species among teleomorph genera
 

Summary:  for isolates of Sclerotium cepivorum, S. coffeicola, S. denigrans, S. hydrophilum, Ceratorhiza oryzae... /p) in the anamorphic genus Ceratorhiza Moore. Ceratorhiza oryzae-sativae (Saw.) Moore (Sclerotium oryzae-sativae Saw... .) is the anamorph of Ceratobasidium oryzae-sativae P.S. Gunnell & R.K. Webster ...

  

Source: Harrington, Thomas C. - Departments of Natural Resource Ecology and Management & Plant Pathology, Iowa State University

 

Collection: Environmental Sciences and Ecology

 
48 Kovach et al. BMC Genomics 2010, 11:420 http://www.biomedcentral.com/1471-2164/11/420
 

Summary:  retroelements in angio- sperm genomes. A rapid increase of retroelement density in Oryza sativa occurred around... ]. The Sorghum bicolor L. (Moench) genome, twice the size of Oryza sativa, is composed of 55% ret- #12;Kovach et... Kovach et al. BMC Genomics 2010, 11:420 ...

  

Source: Yandell, Mark - Department of Human Genetics, University of Utah

 

Collection: Biology and Medicine

 
49 Rice functional genomics research in China Bin Han1,7,*, Yongbiao Xue2
 

Summary:  : rice; Oryza sativa; functional genomics; agronomic traits; genome sequencing; microarray 1... 4 and whole-genome shotgun sequencing of an indica variety 93-11. (a) Rice Oryza sativa japonica... Rice functional genomics research in China Bin Han1,7,*, Yongbiao Xue2 , ...

  

Source: Deng, Xing-Wang - Department of Molecular Biophysics and Biochemistry, Yale University

 

Collection: Biology and Medicine ; Biotechnology

 
50 Comparative and Functional Characterization of Intragenic Tandem Repeats in 10 Aspergillus Genomes
 

Summary:  proteins in 4 of the 10 genomes (A. oryzae, A. terreus, A. fumigatus, and A. nidulans), according... Comparative and Functional Characterization of Intragenic Tandem Repeats in 10 Aspergillus Genomes... the evolution and functional role of ITRs in 10 genomes spanning the fungal genus Aspergillus, a clade

  

Source: Rokas, Antonis - Department of Biological Sciences, Vanderbilt University

 

Collection: Biology and Medicine

 
51 The Genomes of Oryza sativa: A History of Duplications
 

Summary:  The Genomes of Oryza sativa: A History of Duplications Jun Yu1,2[ * , Jun Wang1,2[ , Wei Lin1... , et al. (2005) The genomes of Oryza sativa: A history of duplications. PLoS Biol 3(2): e38... The Genomes of Oryza sativa #12;japonica, there is a small probability that ...

  

Source: Samudrala, Ram - Department of Microbiology, University of Washington at Seattle

 

Collection: Biotechnology ; Biology and Medicine

 
52 BAC-end Sequence Analysis and a Draft Physical Map of the Common Bean (Phaseolus vulgaris L.) Genome
 

Summary:  ) Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics... -insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res 16:140­147 3... sequence of the rice ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
53 ORIGINAL PAPER Development and application of a set of breeder-friendly SNP
 

Summary:  selection and confirmation We collected the SNPs along the rice genome from two resources: OryzaSNP project... Genome (Oryza sativa L. ssp. indica). Science 296:79­92 Yu SB, Xu WJ, Vijayakumar CHM, Ali J, Fu BY, Xu... analyses and molecular breeding of rice (Oryza sativa L.) Haodong ...

  

Source: Deng, Xing-Wang - Department of Molecular Biophysics and Biochemistry, Yale University

 

Collection: Biology and Medicine ; Biotechnology

 
54 New Phytologist (2005) 165: 655658 www.newphytologist.org New Phytologist (2005) Ball PW. 1990. Some aspects of the phytogeography of Carex.
 

Summary:  genome (Oryza sativa L. ssp. japonica). Science 296: 92­100. Guyot R, Keller B. 2004. Ancestral genome... , Zhu LH, Yuan LP, Yang HM. 2002. A draft sequence of the rice genome (Oryza sativa L. ssp indica... ­2419. Reznicek AA. 1990. Evolution of sedges (Carex, ...

  

Source: Gent, Universiteit - Department of Plant Systems Biology, Bioinformatics and Evolutionary Genomics Division

 

Collection: Biology and Medicine

 
55 Genome sequence and analysis of the versatile cell factory Aspergillus niger CBS 513.88
 

Summary:  - pared with the recently published genomes of the aspergilli A. oryzae8, A. nidulans9 and A. fumigatus10... assembled genome (%) 50.4 Protein-coding genes (all) 14,165 Protein-coding genes (o100 aa) 927 GC content... 157 Appendix Genome sequence and analysis of the versatile cell factory ...

  

Source: Groningen, Rijksuniversiteit - Centre for Ecological and Evolutionary Studies, Department of Marine Benthic Ecology and Evolution,

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology

 
56 Comparative DNA Sequence Analysis of Wheat and Rice Genomes
 

Summary:  ). In contrast, wheat, a polyploid (2n = 6x, AA, BB, DD genomes), with a genome size 40 times larger than... sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92­100. Han, F., Kilian, A., Chao... Comparative DNA Sequence Analysis of Wheat and Rice ...

  

Source: Gill, Kulvinder - Department of Crop and Soil Sciences, Washington State University

 

Collection: Biotechnology ; Biology and Medicine

 
57 Organic Acid Production by Filamentous Fungi
 

Summary:  exploitation of these organisms via application of new knowledge in this era of genomics-based biotechnology... production to the available genomic data. 2. Commercial Successes: Organic Acids from Filamentous Fungi... Rhizopus oryzae. These three species of fungi were initially chosen for process development because

  

Source: Pacific Northwest National Laboratory, Data Quality Objectives Program, Visual Sample Plan

 

Collection: Environmental Management and Restoration Technologies

 
58 Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
 

Summary:  . Several features are com- pared with the recently published genomes of the aspergilli A. oryzae8, A... . terreus and A. oryzae and separate from A. fumigatus and A. clavatus, which have smaller genomes (29­30 Mb... Genome sequencing and analysis of the versatile cell factory Aspergillus ...

  

Source: Ussery, David W. - Center for Biological Sequence Analysis, Institute of Biotechnology, Danmarks Tekniske Universitet

 

Collection: Biotechnology

 
59 Spatial Uncoupling of Mitosis and Cytokinesis during Appressorium-Mediated Plant Infection by the Rice Blast
 

Summary:  -encoding genes from the M. oryzae genome. We characterized two of these genes; SEP4, which shows 55% identity... 5 genes were identified from the M. oryzae genome sequence database and amplified from genomic DNA... the 5.2-kb open reading frame of M. oryzae SEP1 and ...

  

Source: Talbot, Nicholas - School of Biosciences, University of Exeter

 

Collection: Biology and Medicine

 
60 Phylogenetic Analysis of Plant Basic Helix-Loop-Helix Proteins Michael J. Buck, William R. Atchley
 

Summary:  and 131 potentially unique bHLH proteins found in the Arabidopsis thaliana and the Oryza sativa genomes... the Arabidopsis thaliana genome and 131 proteins from the Oryza sativa genome that contained a putative b... new families contain sequences only from the two most sequenced plant ...

  

Source: Atchley, William R.- Department of Genetics, North Carolina State University

 

Collection: Biology and Medicine


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61 Copyright 2007 by the Genetics Society of America DOI: 10.1534/genetics.107.078709
 

Summary:  that represent the 10 genome types of the genus Oryza. Genome Res. 16: 140­147. Bennetzen, J. L., J. Ma and K. M... and evolu- tionary explorations in the genus Oryza and in Sorghum. BMC Genomics 7: 199. International Rice... Genomics Institute, University of ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
62 REVIEW ARTICLE Comparative genomics of microsporidia
 

Summary:  8 REVIEW ARTICLE Comparative genomics of microsporidia Patrick J. Keeling, Naomi M. Fast, Joyce S... Key words: Microsporidia, genome compaction, comparative genomics, parasites Abstract. Microsporidia... have been known for some time to possess among the smallest genomes of any eukaryote. There is now

  

Source: Keeling, Patrick - Department of Botany, University of British Columbia

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine

 
63 RESEARCH ARTICLE Open Access Identification of shared single copy nuclear genes
 

Summary:  on synteny for at least three whole genome duplications [1,11-14]. Analysis of the Oryza sativa genome... with whole genome sequences: Arabidopsis, Populus, Vitis and Oryza, and found 4762 to 7542 genes (Figure 1... copy number from the Arabidopsis, Populus, Vitis and ...

  

Source: dePamphilis, Claude - Department of Biology, Pennsylvania State University

 

Collection: Environmental Sciences and Ecology

 
64 A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray
 

Summary:  ., Glazebrook, J., Sessions, A., Oeller, P. and Varma, H. 2002. A draft sequence of the rice genome (Oryza... ., Liu, B., Deng, Y., Dai, L., Zhou, Y. and Zhang, X. 2002. A Draft Sequence of the rice genome (Oryza... ., Dong, W., Hu, S., Zeng, C. and , 2005. The genomes of ...

  

Source: Deng, Xing-Wang - Department of Molecular Biophysics and Biochemistry, Yale University; Gerstein, Mark - Department of Molecular Biophysics and Biochemistry, Yale University; National Institute of Biological Sciences, Beijing

 

Collection: Biology and Medicine ; Biotechnology

 
65 The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae)
 

Summary:  The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae... of Washington, Seattle, WA 98195-5325, USA d DOE Joint Genome Institute and Lawrence Berkeley National... complete chloroplast genome of a lycophyte, Huperzia lucidula. This plant belongs to a significant clade

  

Source: Olmstead, Richard - Department of Biology, University of Washington at Seattle

 

Collection: Environmental Sciences and Ecology

 
66 Cell CycleMediated Regulation of Plant Infection by the Rice Blast Fungus W
 

Summary:  -promoting complex (APC; Peters et al., 1996). We identified an M. oryzae gene, BIM1, from the M. oryzae genome... of the sixth release of the annotated genome sequence of M. oryzae from the Broad Institute (http... cyclin B-encoding genes, CYC1 and CYC2, were identified from the M. ...

  

Source: Talbot, Nicholas - School of Biosciences, University of Exeter

 

Collection: Biology and Medicine

 
67 Short Specialist Review Gene structure prediction
 

Summary:  of subsequently sequenced genomes. References Altschul SF, Madden TL, Sch¨affer AA, Zhang J, Zhang Z, Miller W... Short Specialist Review Gene structure prediction in plant genomes Volker Brendel Iowa State... prediction in vertebrates. The second reason is pragmatic. Expressed Sequence Tag (EST) sequencing and ...

  

Source: Brendel, Volker - Departments of Genetics, Development and Cell Biology & Statistics, Iowa State University

 

Collection: Biotechnology

 
68 Chromosoma (2004) 112:300307 DOI 10.1007/s00412-004-0274-8
 

Summary:  Value Average (SD) P Value Oryza sativa (AA) 2n=2x=24 Non-xylem root cells 80 22.1 (1.7) 32.2 (9... vessel cells via their telomeres and centromeres in diploid rice (Oryza sativa) Received: 5 December 2003... rice species (Oryza sativa and O. punctata). Contrary to expectation, this has revealed

  

Source: Shaw, Peter - Cell and Developmental Biology Department, John Innes Centre

 

Collection: Biology and Medicine

 
69 Comparative Sequencing of Plant Genomes: Choices to Make The first sequenced genome of a plant,
 

Summary:  that time, the complete rice genome (Oryza sativa; Goff et al., 2002; Yu et al., 2002; International Rice... Oryza. Genome Res. 16, 140­147. Arabidopsis Genome Initiative (2000). Analysis of the genome sequence... . (2002). A draft sequence of the rice ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
70 Supporting Information Fawcett et al. 10.1073/pnas.0900906106
 

Summary:  duplication events in eukaryotic genomes is to build age distributions of paralogs, where the number... genome duplications (Fig. S1). If the rate of synonymous substitutions is known, one can convert the KS... genome duplication in Arabidopsis at 65 mya, whereas Simillion et al. (4) arrived at 75 mya

  

Source: Gent, Universiteit - Department of Plant Systems Biology, Bioinformatics and Evolutionary Genomics Division

 

Collection: Biology and Medicine

 
71 Development of immortal introgression populations; genome wide Near Isogenic Lines (NILs) for cotton
 

Summary:  Development of immortal introgression populations; genome wide Near Isogenic Lines (NILs... of gene networks responsible for the functional genomics behind fiber development can be accomplished... . The objective of our research is to develop immortal introgression mapping populations; genome wide Near

  

Source: Arnold, Jonathan - Nanoscale Science and Engineering Center & Department of Genetics, University of Georgia

 

Collection: Biotechnology

 
72 MicroCommentary Silencing the crowd: high-throughput functional genomics in
 

Summary:  MicroCommentary Silencing the crowd: high-throughput functional genomics in Magnaporthe oryzae... analysis. To determine the efficacy of using RNAi to study the biology of M. oryzae at a genomic scale... for pathogenicity, as were four of the 12 predicted Ca2+ pump-encoding genes in the M. ...

  

Source: Talbot, Nicholas - School of Biosciences, University of Exeter

 

Collection: Biology and Medicine

 
73 www.newphytologist.org 937 Blackwell Publishing, Ltd.
 

Summary:  . Key words: diploidization, DNA loss, duplication, genome, polyploidy, rice (Oryza sativa). New... . With the availability of the 370 Mb genome sequences assembled into 12 chromosomes of Oryza sativa subspecies indica, we... J, Macalma T, Oliphant A, Briggs S. 2002. A draft sequence of the rice ...

  

Source: Hao, Bailin - Institute of Theoretical Physics, Fudan University

 

Collection: Physics

 
74 Retrotransposons and Tandem Repeat Sequences in the Nuclear Genomes of Cryptomonad Algae
 

Summary:  Retrotransposons and Tandem Repeat Sequences in the Nuclear Genomes of Cryptomonad Algae Hameed... ,2 John M. Archibald1 1 Genome Atlantic and the Canadian Institute for Advanced Research, Program... Scotia, Canada, B3H 1X5 2 The Atlantic Genome Centre, Institute for Marine Biosciences, Halifax, Nova

  

Source: Archibald, John - Department of Biochemistry and Molecular Biology, Dalhousie University

 

Collection: Biology and Medicine

 
75 1260 / Molecular Plant-Microbe Interactions MPMI Vol. 23, No. 10, 2010, pp. 12601274. doi:10.1094/MPMI-03-10-0052. 2010 The American Phytopathological Society
 

Summary:  from the M. oryzae genome was signifi- cantly downregulated by deletion of MoLDB1. Analysis of an M... is identical to the protein se- quence predicted by automated annotation of the M. oryzae genome sequence (ID... in moldb1 mutants. Bioinformatic and genomic analysis showed that M. ...

  

Source: Talbot, Nicholas - School of Biosciences, University of Exeter

 

Collection: Biology and Medicine

 
76 Incongruent Patterns of Local and Global Genome Size Evolution in Cotton
 

Summary:  - though it also is evident from the draft Oryza sativa genome sequence (Goff et al. 2002; Yu et al. 2002... sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92­100. Gordon, D., Abajian, C... Incongruent Patterns of Local and Global Genome Size Evolution in Cotton ...

  

Source: Wendel, Jonathan F. - Department of Ecology, Evolution, and Organismal Biology, Iowa State University

 

Collection: Environmental Sciences and Ecology

 
77 www.newphytologist.org 1 Genetically modified (GM) rice with enhanced agronomic traits and pharmaceutical
 

Summary:  GM and nonGM rice (Oryza sativa) in China. · Three insect-resistant GM rice (Bt/CpTI) and non... -pollination, gene flow, hygromycin resistance, isolation distance, Oryza sativa, transgenic rice. New Phytologist... Introduction Rice (Oryza sativa) provides a staple food for nearly half of the global population

  

Source: Snow, Allison A. - Department of Evolution, Ecology and Organismal Biology, Ohio State University

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology

 
78 ORIGINAL PAPER Molecular evolutionary analysis of the widespread piggyBac
 

Summary:  piggyBac-like sequences from publicly available genome sequences and expressed sequence tags (ESTs... Bac-like sequences were found in the genomes of a phylogenetically diverse range of organ- isms including fungi... of ``domestication'' of the piggyBac transposase sequence by the host genome for cellular functions were ...

  

Source: Madey, Gregory R. - Department of Computer Science and Engineering, University of Notre Dame

 

Collection: Computer Technologies and Information Sciences

 
79 Recent developments in computational approaches for
 

Summary:  analysis of the Arabidopsis and rice (Oryza sativa) genomes.(27) Although the rice genome was still very... Recent developments in computational approaches for uncovering genomic homology Cedric Simillion... , Klaas Vandepoele, and Yves Van de Peer* Summary Identifying genomic homology ...

  

Source: Gent, Universiteit - Department of Plant Systems Biology, Bioinformatics and Evolutionary Genomics Division

 

Collection: Biology and Medicine

 
80 Journal of Heredity 2009:100(5):648655 doi:10.1093/jhered/esp065
 

Summary:  @uta.edu. Abstract Recent advances in genome sequencing have led to a vast accumulation of transposable element data... . Consideration of the genome sequencing projects in a phylogenetic context reveals that despite the hundreds... of eukaryotic genomes that have been sequenced, a strong bias in sampling exists. There is a ...

  

Source: Pritham, Ellen J. - Department of Biology, University of Texas at Arlington

 

Collection: Biology and Medicine


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81 Molecular Plant Volume 1 Number 5 Pages 715719 September 2008 Perspective
 

Summary:  : (1) sequencing a core set of O. sativa strains and its AA-genome relatives; and (2) develop... ­1133. The Rice Annotation Project (2007). Curated genome annotation of Oryza sativa ssp. japonica and comparative... : A Call For An International Coordinated Effort In Rice Functional Genomics Qifa Zhanga,1 , ...

  

Source: Deng, Xing-Wang - Department of Molecular Biophysics and Biochemistry, Yale University

 

Collection: Biology and Medicine ; Biotechnology

 
82 Comparative sequence analysis of the Phytochrome C gene and its upstream region in allohexaploid wheat reveals new data
 

Summary:  -phosphoglycerate kinase (Pgk-1), estimated the hybridization of T. urartu (AA) with an unknown B genome species... had wheat genomes A and D as sister taxa, followed by wheat genome B, Hordeum, Oryza, and Sorghum... other, followed by Secale and the S genome from ...

  

Source: Doust, Andrew - Molecular Systematics Laboratory, University of Missouri-St. Louis

 

Collection: Environmental Sciences and Ecology

 
83 2005 Nature Publishing Group Sequencing of Aspergillus nidulans and
 

Summary:  genomics study with two related aspergilli: A. fumigatus2 and A. oryzae3 . A. fumigatus is a life... | Comparison of genome characteristics Genome characteristic A. nidulans A. fumigatus A. oryzae General... . fumigatus and A. oryzae James E. Galagan1 , Sarah E. ...

  

Source: Lee, Su-In - Departments of Genome Sciences & Computer Science and Engineering, University of Washington at Seattle

 

Collection: Biology and Medicine ; Computer Technologies and Information Sciences

 
84 Proc. Natl. Acad. Sci. USA Vol. 95, pp. 81358140, July 1998
 

Summary:  of a 168-bp sequence that is represented 6,000 times in the rice genome and is detected only in Oryza... chromosomes (Fig. 1K). Three subspecies of O. sativa (AA genome), together with O. glaberrima (AA), O... Proc. Natl. Acad. Sci. USA Vol. 95, pp. 8135­8140, July 1998 Genetics Rice ...

  

Source: Jackson, Scott A. - Department of Agronomy, Purdue University

 

Collection: Biotechnology

 
85 Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium)
 

Summary:  Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium... Arizona Genomics Institute, University of Arizona, Tucson, AZ 85721, and 3 Plant Genome Mapping Laboratory... of Horticulture, University of Wisconsin, Madison, WI 53706, USA Summary Genome sizes vary by ...

  

Source: Wendel, Jonathan F. - Department of Ecology, Evolution, and Organismal Biology, Iowa State University

 

Collection: Environmental Sciences and Ecology

 
86 Chlamydiae Has Contributed at Least 55 Genes to Plantae with Predominantly Plastid Functions
 

Summary:  . Carver Center for Comparative Genomics, University of Iowa, Iowa City, Iowa, United States of America... into this process, we conducted an in-depth phylogenomic analysis of genomic data (nuclear proteins) from 17 Plantae... contributors to early Plantae genomes that extend beyond plastid metabolism. The chlamydial gene ...

  

Source: Bhattacharya, Debashish - Department of Ecology, Evolution, and Natural Resources, Rutgers University

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine

 
87 Annu. Rev. Genomics Hum. Genet. 2004. 5:44377 doi: 10.1146/annurev.genom.5.061903.180017
 

Summary:  Annu. Rev. Genomics Hum. Genet. 2004. 5:443­77 doi: 10.1146/annurev.genom.5.061903.180017 Copyright... 1, 2004 PLANT GENOMICS: The Third Wave Justin O. Borevitz1,2 and Joseph R. Ecker1 1 Genomic Analysis... , Chicago, Illinois 60637 Key Words Arabidopsis, comparative genomics, functional ...

  

Source: Kihara, Daisuke - Department of Biological Sciences, Purdue University

 

Collection: Biology and Medicine ; Biotechnology

 
88 Annu. Rev. Phytopathol. 2004. 42:16384 doi: 10.1146/annurev.phyto.42.040803.140310
 

Summary:  in the genomes of Xanthomonas oryzae pv. oryzae, X. axonopodis pv. citri, and X. fastidiosa. Gray arrows... on COMPARATIVE GENOMICS ANALYSES OF CITRUS-ASSOCIATED BACTERIA Leandro M. Moreira,1 Robson F. de Souza,1 Nalvo F... @fcav.unesp.br, jcycler@fcav.unesp.br; 6 Alellyx Applied ...

  

Source: Setubal, João Carlos - Department of Computer Science, Virginia Tech

 

Collection: Computer Technologies and Information Sciences

 
89 Genome Update: Protein secretion systems in 225
 

Summary:  , the plant pathogen Xanthomonas oryzae and finally Vibrio fischeri. The other genomes are of the probiotic... strain causes endemic disease in tropical Asian countries. The X. oryzae strain KACC10331 genome is 4... Genome Update: Protein secretion systems in 225 bacterial ...

  

Source: Ussery, David W. - Center for Biological Sequence Analysis, Institute of Biotechnology, Danmarks Tekniske Universitet

 

Collection: Biotechnology

 
90 The history and disposition of transposable elements in polyploid Gossypium
 

Summary:  component of plant genomes. It is of particular interest to explore the potential activation of TE... and epigenetic restructuring. Here we explore the consequences of genomic merger and doubling on copia and gypsy... , we describe the com- position and genomic origin of TEs in polyploid Gossypium. In addition, we

  

Source: Wendel, Jonathan F. - Department of Ecology, Evolution, and Organismal Biology, Iowa State University

 

Collection: Environmental Sciences and Ecology

 
91 Population structure of the rice sheath blight pathogen Rhizoctonia solani AG-1 IA Celeste C. Linde1,3
 

Summary:  University, Canberra, ACT 0200, Australia Accepted 26 January 2005 Key words: Ceratobasidium oryzae... DNA analyses subsequently confirmed that they were either Ceratobasidium oryzae- sativae isolates or another... digestion of total genomic DNA with HindIII, Southern blotting, and RFLP analysis were performed

  

Source: McDonald, Bruce - Institut für Integrative Biologie, Eidgenössische Technische Hochschule Zürich (ETHZ)

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine

 
92 Molecular Ecology Notes (2004) 4, 262 264 doi: 10.1111/j.1471-8286.2004.00636.x 2004 Blackwell Publishing Ltd
 

Summary:  chloroplast genome sequences of Oryza sativa (rice), Zea mays (maize) and Triticum aestivum (wheat) were... Ireland, Department of Biological Sciences, The Open University, Walton Hall, Milton Keynes, Bucks MK7 6AA... . We have used the complete chloroplast genome sequences of rice, maize and wheat to design ...

  

Source: Mathews, Sarah - Arnold Arboretum, Harvard University; Provan, Jim - School of Biological Sciences, Queen's University Belfast

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology

 
93 Vol. 23, No. 3, 2010 / 317 MPMI Vol. 23, No. 3, 2010, pp. 317331. doi:10.1094/MPMI-23-3-0317. 2010 The American Phytopathological Society
 

Summary:  to the protein sequence predicted by automated annota- tion of the M. oryzae genome sequence (ID: MGG_14008... into the Guy11 genome and that MoRIC8 is essential for pathogenicity of Magnaporthe oryzae. MoRIC8 is required... Plant Infection by the Rice Blast Fungus Magnaporthe oryzae Ya ...

  

Source: Talbot, Nicholas - School of Biosciences, University of Exeter

 

Collection: Biology and Medicine

 
94 Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea
 

Summary:  Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea... Microbiology and Kluyver Centre for Genomics of Industrial Fermentations, Utrecht, The Netherlands, 9 CBS... States of America, 31 Institute for Plant Genomics and Biotechnology, Borlaug Genomics and ...

  

Source: Kohn, Linda M. - Department of Ecology and Evolutionary Biology, University of Toronto; Talbot, Nicholas - School of Biosciences, University of Exeter

 

Collection: Biology and Medicine ; Environmental Sciences and Ecology

 
95 The Plant Cell, Vol. 15, 21922202, September 2003, www.plantcell.org 2003 American Society of Plant Biologists Evidence That Rice and Other Cereals Are Ancient Aneuploids
 

Summary:  .A., et al. (2002). A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296, 92... , 722­726. Levy, A.A., and Feldman, M. (2002). The impact of polyploidy on grass genome evolution. Plant... ). A draft sequence of the rice genome (Oryza sativa ...

  

Source: Gent, Universiteit - Department of Plant Systems Biology, Bioinformatics and Evolutionary Genomics Division

 

Collection: Biology and Medicine

 
96 MicroRNAs in plants Brenda J. Reinhart,1
 

Summary:  to the available rice genomic sequence (Oryza matches) are indicated, as is the arm of the predicted stem... ), relative to the nearest gene are noted for all matches in the Arabidopsis genome. a One of the miR169 Oryza... Arabidopsis miRNAs have sets of identical matches in the genome of ...

  

Source: Bartel, David - Whitehead Institute for Biomedical Research & Department of Biology, Massachusetts Institute of Technology (MIT)

 

Collection: Biotechnology ; Biology and Medicine

 
97 N d'ordre 97 ISAL0041 Anne 1997 devant l'INSTITUT NATIONAL DES SCIENCES APPLIQUES DE LYON
 

Summary:  moléculaires de la bactérie symbiotique principale du charançon des céréales Sitophilus oryzae (Coléoptère... ........................................................................................................................ 12 PPAARRTTIIEE AA... ...

  

Source: Ecole Polytechnique, Centre de mathématiques

 

Collection: Mathematics

 
98 Comparative sequence analysis between orthologous regions of the Arabidopsis and
 

Summary:  , A., Oeller, P., Varma, H., et al. 2002. A draft sequence of the rice genome (Oryza sativa L. ssp. ja... , B., Deng, Y., Dai, L., Zhou, Y., Zhang, X., et al. 2002. A draft sequence of the rice genome (Oryza... Comparative sequence analysis between orthologous regions of the Arabidopsis and Populus ...

  

Source: Bradshaw, Toby - Department of Biology, University of Washington at Seattle

 

Collection: Environmental Sciences and Ecology ; Biology and Medicine

 
99 BioMed Central Page 1 of 15
 

Summary:  BioMed Central Page 1 of 15 (page number not for citation purposes) BMC Genomics Open Access... (architectures) encoded in the completely-sequenced proteobacterial genomes. Nine protein domain families were... architectures are predicted to be secreted. Published: 16 February 2005 BMC Genomics 2005, 6:17 doi:10

  

Source: Downie, J. Allan - Department of Molecular Microbiology, John Innes Centre

 

Collection: Biology and Medicine

 
100 Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
 

Summary:  alignment. Pair-wise alignments between P. chrysogenum and four target genomes (A. fumigatus, A. oryzae, A... in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae. Genome Biol. 7, R16... of Aspergillus oryzae. Nature 438, 1157­1161 ...

  

Source: Badger, Jonathan - Institute for Genomic Research, Rockville

 

Collection: Biotechnology ; Biology and Medicine


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